Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 179 genes and 12 molecular subtypes across 172 patients, 4 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • MUC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 179 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 4 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Chi-square test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
TP53 87 (51%) 85 0.00576
(1.00) 		0.0707
(1.00) 		3.33e-05
(0.0609) 		0.399
(1.00) 		0.000579
(1.00) 		3.8e-05
(0.0695) 		1.69e-05
(0.031) 		0.000677
(1.00) 		0.00599
(1.00) 		0.0404
(1.00) 		0.379
(1.00) 		0.393
(1.00)
MUC7 14 (8%) 158 0.0174
(1.00) 		0.253
(1.00) 		0.836
(1.00) 		0.521
(1.00) 		0.00321
(1.00) 		7.96e-05
(0.145) 		0.0365
(1.00) 		0.05
(1.00) 		0.293
(1.00) 		0.00538
(1.00)
CDKN2A 8 (5%) 164 0.899
(1.00) 		0.634
(1.00) 		0.769
(1.00) 		1
(1.00) 		0.637
(1.00) 		0.542
(1.00) 		1
(1.00) 		0.509
(1.00) 		0.455
(1.00) 		0.155
(1.00)
KRAS 47 (27%) 125 0.816
(1.00) 		0.882
(1.00) 		0.0543
(1.00) 		0.477
(1.00) 		0.199
(1.00) 		0.0985
(1.00) 		0.605
(1.00) 		0.686
(1.00) 		0.013
(1.00) 		0.0896
(1.00) 		0.176
(1.00) 		0.277
(1.00)
EGFR 22 (13%) 150 0.125
(1.00) 		1
(1.00) 		0.154
(1.00) 		0.595
(1.00) 		0.057
(1.00) 		0.075
(1.00) 		0.271
(1.00) 		0.192
(1.00) 		0.096
(1.00) 		0.0155
(1.00)
STK11 20 (12%) 152 0.554
(1.00) 		0.418
(1.00) 		0.481
(1.00) 		0.17
(1.00) 		0.407
(1.00) 		0.161
(1.00) 		0.00233
(1.00) 		0.00197
(1.00) 		0.622
(1.00) 		0.285
(1.00) 		0.267
(1.00) 		0.71
(1.00)
KEAP1 32 (19%) 140 0.375
(1.00) 		0.242
(1.00) 		0.181
(1.00) 		0.439
(1.00) 		0.0897
(1.00) 		0.0538
(1.00) 		0.000274
(0.501) 		0.000251
(0.458) 		0.932
(1.00) 		0.231
(1.00) 		0.658
(1.00) 		0.325
(1.00)
RBM10 12 (7%) 160 0.252
(1.00) 		0.236
(1.00) 		0.57
(1.00) 		0.0686
(1.00) 		1
(1.00) 		0.725
(1.00) 		0.807
(1.00) 		0.808
(1.00) 		0.852
(1.00) 		1
(1.00) 		0.794
(1.00) 		0.236
(1.00)
NF1 21 (12%) 151 0.912
(1.00) 		0.821
(1.00) 		0.00671
(1.00) 		0.31
(1.00) 		0.871
(1.00) 		0.885
(1.00) 		0.411
(1.00) 		0.432
(1.00) 		0.0763
(1.00) 		0.286
(1.00) 		0.0714
(1.00) 		0.509
(1.00)
GPR112 35 (20%) 137 0.493
(1.00) 		0.523
(1.00) 		0.188
(1.00) 		0.311
(1.00) 		0.236
(1.00) 		0.503
(1.00) 		0.367
(1.00) 		0.584
(1.00) 		0.638
(1.00) 		0.561
(1.00) 		0.222
(1.00) 		0.164
(1.00)
SMARCA4 14 (8%) 158 0.12
(1.00) 		0.157
(1.00) 		0.448
(1.00) 		0.253
(1.00) 		0.919
(1.00) 		0.497
(1.00) 		0.0151
(1.00) 		0.000783
(1.00) 		0.0455
(1.00) 		0.0357
(1.00) 		0.0529
(1.00) 		0.0287
(1.00)
FLG 42 (24%) 130 0.0862
(1.00) 		0.707
(1.00) 		0.391
(1.00) 		0.18
(1.00) 		0.318
(1.00) 		0.432
(1.00) 		0.135
(1.00) 		0.363
(1.00) 		0.223
(1.00) 		0.24
(1.00) 		0.767
(1.00) 		0.566
(1.00)
HRNR 24 (14%) 148 0.0502
(1.00) 		0.0514
(1.00) 		0.653
(1.00) 		0.733
(1.00) 		1
(1.00) 		1
(1.00) 		0.155
(1.00) 		0.0547
(1.00) 		0.908
(1.00) 		0.28
(1.00) 		0.933
(1.00) 		1
(1.00)
BRAF 15 (9%) 157 0.247
(1.00) 		0.321
(1.00) 		0.714
(1.00) 		0.672
(1.00) 		1
(1.00) 		0.898
(1.00) 		0.666
(1.00) 		0.357
(1.00) 		0.388
(1.00) 		0.711
(1.00) 		0.902
(1.00) 		0.298
(1.00)
COL11A1 34 (20%) 138 0.142
(1.00) 		0.0022
(1.00) 		0.748
(1.00) 		0.198
(1.00) 		0.373
(1.00) 		1
(1.00) 		0.281
(1.00) 		0.143
(1.00) 		0.0297
(1.00) 		0.026
(1.00) 		0.28
(1.00) 		0.103
(1.00)
U2AF1 6 (3%) 166 1
(1.00) 		0.11
(1.00) 		0.238
(1.00) 		0.486
(1.00) 		0.653
(1.00) 		0.593
(1.00) 		0.323
(1.00) 		0.0433
(1.00) 		0.794
(1.00) 		1
(1.00)
PCK1 10 (6%) 162 0.42
(1.00) 		0.412
(1.00) 		0.249
(1.00) 		0.0168
(1.00) 		0.729
(1.00) 		0.85
(1.00) 		0.972
(1.00) 		0.717
(1.00) 		0.251
(1.00) 		1
(1.00) 		0.193
(1.00) 		1
(1.00)
RIMS2 32 (19%) 140 0.151
(1.00) 		0.176
(1.00) 		0.132
(1.00) 		0.147
(1.00) 		0.447
(1.00) 		0.646
(1.00) 		0.104
(1.00) 		0.138
(1.00) 		0.104
(1.00) 		0.127
(1.00) 		0.0298
(1.00) 		0.033
(1.00)
CSMD3 78 (45%) 94 0.0252
(1.00) 		0.0306
(1.00) 		0.0108
(1.00) 		0.197
(1.00) 		0.247
(1.00) 		0.0933
(1.00) 		0.00159
(1.00) 		0.00116
(1.00) 		0.00869
(1.00) 		0.0681
(1.00) 		0.258
(1.00) 		0.123
(1.00)
RB1 7 (4%) 165 0.05
(1.00) 		0.665
(1.00) 		0.54
(1.00) 		0.534
(1.00) 		0.401
(1.00) 		0.139
(1.00) 		0.0871
(1.00) 		0.113
(1.00) 		0.865
(1.00) 		0.472
(1.00)
FTSJD1 6 (3%) 166 0.568
(1.00) 		0.0253
(1.00) 		0.0888
(1.00) 		0.381
(1.00) 		0.893
(1.00) 		0.25
(1.00) 		1
(1.00) 		0.85
(1.00)
RIT1 8 (5%) 164 1
(1.00) 		0.444
(1.00) 		0.769
(1.00) 		0.157
(1.00) 		0.875
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.295
(1.00) 		0.504
(1.00)
LRP1B 60 (35%) 112 0.363
(1.00) 		0.454
(1.00) 		0.533
(1.00) 		0.012
(1.00) 		0.619
(1.00) 		0.495
(1.00) 		0.178
(1.00) 		0.0397
(1.00) 		0.493
(1.00) 		0.51
(1.00) 		0.83
(1.00) 		0.731
(1.00)
OR10J3 9 (5%) 163 0.6
(1.00) 		1
(1.00) 		1
(1.00) 		0.654
(1.00) 		0.326
(1.00) 		0.43
(1.00) 		0.395
(1.00) 		0.375
(1.00) 		0.295
(1.00) 		1
(1.00)
LTBP1 20 (12%) 152 0.71
(1.00) 		0.602
(1.00) 		0.466
(1.00) 		0.168
(1.00) 		0.139
(1.00) 		0.406
(1.00) 		0.501
(1.00) 		0.111
(1.00) 		0.227
(1.00) 		0.168
(1.00) 		0.357
(1.00) 		0.222
(1.00)
SETD2 15 (9%) 157 0.379
(1.00) 		0.104
(1.00) 		0.419
(1.00) 		0.067
(1.00) 		0.623
(1.00) 		0.197
(1.00) 		0.241
(1.00) 		0.0924
(1.00) 		0.294
(1.00) 		0.199
(1.00)
ZCCHC5 10 (6%) 162 0.913
(1.00) 		0.0331
(1.00) 		0.57
(1.00) 		1
(1.00) 		0.588
(1.00) 		0.604
(1.00) 		0.467
(1.00) 		0.148
(1.00) 		0.322
(1.00) 		1
(1.00)
ADAMTS5 14 (8%) 158 1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.806
(1.00) 		0.506
(1.00) 		0.32
(1.00) 		0.593
(1.00) 		0.586
(1.00) 		0.289
(1.00) 		0.482
(1.00) 		1
(1.00)
GBA3 8 (5%) 164 1
(1.00) 		0.375
(1.00) 		0.386
(1.00) 		0.85
(1.00) 		0.507
(1.00) 		0.218
(1.00) 		0.764
(1.00) 		1
(1.00) 		0.475
(1.00) 		0.522
(1.00)
MYL10 5 (3%) 167 1
(1.00) 		1
(1.00) 		1
(1.00) 		0.303
(1.00) 		0.446
(1.00) 		0.851
(1.00) 		1
(1.00)
SMAD4 7 (4%) 165 1
(1.00) 		0.618
(1.00) 		0.839
(1.00) 		0.297
(1.00) 		0.831
(1.00) 		0.157
(1.00) 		0.473
(1.00) 		0.532
(1.00) 		0.847
(1.00) 		0.637
(1.00)
ZNF268 5 (3%) 167 0.308
(1.00) 		0.818
(1.00) 		0.0897
(1.00) 		0.149
(1.00) 		0.228
(1.00) 		0.347
(1.00) 		0.738
(1.00) 		0.485
(1.00) 		0.815
(1.00)
OR4Q3 11 (6%) 161 0.386
(1.00) 		0.258
(1.00) 		0.0664
(1.00) 		0.26
(1.00) 		0.587
(1.00) 		0.062
(1.00) 		0.0146
(1.00) 		0.014
(1.00) 		0.683
(1.00) 		0.0222
(1.00)
ARID1A 11 (6%) 161 0.0356
(1.00) 		0.258
(1.00) 		0.096
(1.00) 		0.13
(1.00) 		0.683
(1.00) 		0.329
(1.00) 		0.00639
(1.00) 		0.221
(1.00) 		0.255
(1.00) 		0.212
(1.00)
CCDC73 11 (6%) 161 0.144
(1.00) 		0.252
(1.00) 		0.899
(1.00) 		0.898
(1.00) 		0.479
(1.00) 		0.927
(1.00) 		0.41
(1.00) 		0.448
(1.00) 		0.682
(1.00) 		0.696
(1.00)
MGA 16 (9%) 156 0.789
(1.00) 		0.0937
(1.00) 		0.231
(1.00) 		1
(1.00) 		0.433
(1.00) 		0.272
(1.00) 		0.303
(1.00) 		0.183
(1.00) 		0.266
(1.00) 		0.365
(1.00)
FAM48B1 10 (6%) 162 0.53
(1.00) 		1
(1.00) 		0.577
(1.00) 		0.279
(1.00) 		0.231
(1.00) 		0.874
(1.00) 		0.814
(1.00) 		0.847
(1.00) 		0.391
(1.00) 		0.705
(1.00) 		1
(1.00) 		0.589
(1.00)
IFNA7 5 (3%) 167 0.112
(1.00) 		1
(1.00) 		1
(1.00) 		0.394
(1.00) 		0.0147
(1.00) 		0.325
(1.00) 		0.2
(1.00) 		0.3
(1.00) 		0.455
(1.00) 		0.458
(1.00)
MLL3 34 (20%) 138 0.505
(1.00) 		0.504
(1.00) 		1
(1.00) 		1
(1.00) 		0.469
(1.00) 		0.684
(1.00) 		0.795
(1.00) 		0.922
(1.00) 		0.587
(1.00) 		0.639
(1.00) 		0.546
(1.00) 		0.234
(1.00)
ASTN2 14 (8%) 158 0.55
(1.00) 		0.914
(1.00) 		0.919
(1.00) 		0.916
(1.00) 		0.578
(1.00) 		0.394
(1.00) 		0.191
(1.00) 		0.92
(1.00) 		0.914
(1.00) 		0.57
(1.00)
MBD1 6 (3%) 166 0.139
(1.00) 		0.839
(1.00) 		0.591
(1.00) 		0.028
(1.00) 		0.682
(1.00) 		0.563
(1.00) 		1
(1.00) 		0.794
(1.00) 		1
(1.00)
FLI1 6 (3%) 166 0.641
(1.00) 		0.591
(1.00) 		0.745
(1.00) 		1
(1.00) 		1
(1.00) 		0.591
(1.00) 		0.647
(1.00) 		1
(1.00) 		0.563
(1.00) 		0.85
(1.00)
LAX1 6 (3%) 166 0.655
(1.00) 		0.0722
(1.00) 		0.377
(1.00) 		0.563
(1.00) 		0.85
(1.00)
SVOP 7 (4%) 165 0.694
(1.00) 		0.444
(1.00) 		0.268
(1.00) 		0.568
(1.00) 		0.647
(1.00) 		0.796
(1.00) 		0.677
(1.00) 		0.871
(1.00) 		0.295
(1.00) 		1
(1.00)
MTTP 6 (3%) 166 0.195
(1.00) 		0.465
(1.00) 		1
(1.00) 		0.486
(1.00) 		0.105
(1.00) 		0.0038
(1.00) 		0.323
(1.00) 		0.715
(1.00) 		0.552
(1.00) 		0.756
(1.00)
COL19A1 14 (8%) 158 0.448
(1.00) 		0.555
(1.00) 		0.0538
(1.00) 		0.615
(1.00) 		0.173
(1.00) 		0.149
(1.00) 		0.237
(1.00) 		0.173
(1.00) 		0.0856
(1.00) 		0.0739
(1.00)
OR10G9 10 (6%) 162 0.33
(1.00) 		0.07
(1.00) 		0.866
(1.00) 		0.28
(1.00) 		0.322
(1.00) 		0.392
(1.00) 		0.467
(1.00) 		0.591
(1.00) 		0.322
(1.00) 		0.355
(1.00)
LRRC32 11 (6%) 161 0.375
(1.00) 		0.242
(1.00) 		0.103
(1.00) 		0.258
(1.00) 		0.268
(1.00) 		0.0847
(1.00) 		0.145
(1.00) 		0.303
(1.00) 		0.425
(1.00) 		0.247
(1.00) 		0.865
(1.00) 		0.0497
(1.00)
TEX15 24 (14%) 148 0.364
(1.00) 		0.00702
(1.00) 		0.841
(1.00) 		0.264
(1.00) 		0.192
(1.00) 		0.1
(1.00) 		0.277
(1.00) 		0.461
(1.00) 		0.749
(1.00) 		0.345
(1.00)
CNGA2 11 (6%) 161 0.12
(1.00) 		0.102
(1.00) 		0.28
(1.00) 		0.155
(1.00) 		1
(1.00) 		1
(1.00) 		0.176
(1.00) 		1
(1.00) 		0.489
(1.00) 		0.136
(1.00) 		0.659
(1.00) 		1
(1.00)
ANP32C 8 (5%) 164 0.127
(1.00) 		0.0331
(1.00) 		1
(1.00) 		0.326
(1.00) 		0.17
(1.00) 		0.66
(1.00) 		0.395
(1.00) 		0.668
(1.00) 		1
(1.00) 		1
(1.00)
KIAA1755 12 (7%) 160 0.388
(1.00) 		0.702
(1.00) 		0.511
(1.00) 		0.3
(1.00) 		0.125
(1.00) 		0.0733
(1.00) 		0.767
(1.00) 		0.868
(1.00) 		0.615
(1.00) 		1
(1.00) 		0.42
(1.00) 		1
(1.00)
OVCH1 14 (8%) 158 0.912
(1.00) 		1
(1.00) 		0.105
(1.00) 		0.853
(1.00) 		0.366
(1.00) 		0.903
(1.00) 		0.935
(1.00) 		0.592
(1.00) 		0.803
(1.00) 		0.301
(1.00) 		1
(1.00) 		1
(1.00)
PJA1 8 (5%) 164 0.899
(1.00) 		1
(1.00) 		0.706
(1.00) 		0.171
(1.00) 		0.84
(1.00) 		0.0458
(1.00) 		0.473
(1.00) 		0.379
(1.00) 		0.272
(1.00) 		0.589
(1.00)
SUN1 8 (5%) 164 0.899
(1.00) 		0.687
(1.00) 		0.238
(1.00) 		0.385
(1.00) 		0.84
(1.00) 		0.738
(1.00) 		0.0579
(1.00) 		0.113
(1.00) 		0.441
(1.00) 		0.318
(1.00)
PABPC3 9 (5%) 163 0.823
(1.00) 		0.0916
(1.00) 		1
(1.00) 		0.755
(1.00) 		0.717
(1.00) 		0.834
(1.00) 		0.201
(1.00) 		0.267
(1.00) 		0.295
(1.00) 		1
(1.00)
STXBP5L 12 (7%) 160 0.796
(1.00) 		0.0806
(1.00) 		0.764
(1.00) 		0.759
(1.00) 		0.834
(1.00) 		0.149
(1.00) 		0.272
(1.00) 		0.525
(1.00) 		0.42
(1.00) 		0.433
(1.00)
ELTD1 15 (9%) 157 0.236
(1.00) 		1
(1.00) 		0.54
(1.00) 		0.0235
(1.00) 		0.199
(1.00) 		0.861
(1.00) 		0.0335
(1.00) 		0.0106
(1.00) 		0.237
(1.00) 		0.05
(1.00) 		0.151
(1.00) 		0.00804
(1.00)
KRT28 7 (4%) 165 0.694
(1.00) 		0.379
(1.00) 		0.54
(1.00) 		0.534
(1.00) 		0.808
(1.00) 		0.892
(1.00) 		1
(1.00) 		0.532
(1.00) 		0.518
(1.00) 		0.815
(1.00)
EPHA6 22 (13%) 150 0.841
(1.00) 		0.602
(1.00) 		0.369
(1.00) 		1
(1.00) 		0.23
(1.00) 		0.149
(1.00) 		0.296
(1.00) 		0.582
(1.00) 		0.0658
(1.00) 		0.0217
(1.00) 		0.754
(1.00) 		0.404
(1.00)
TLR4 23 (13%) 149 1
(1.00) 		0.238
(1.00) 		0.871
(1.00) 		0.394
(1.00) 		0.284
(1.00) 		0.312
(1.00) 		0.127
(1.00) 		0.185
(1.00) 		0.661
(1.00) 		0.192
(1.00)
OR10R2 10 (6%) 162 0.913
(1.00) 		0.482
(1.00) 		0.636
(1.00) 		1
(1.00) 		0.845
(1.00) 		1
(1.00) 		0.185
(1.00) 		0.0878
(1.00) 		0.89
(1.00) 		0.355
(1.00)
OR6F1 10 (6%) 162 0.329
(1.00) 		0.322
(1.00) 		0.432
(1.00) 		0.444
(1.00) 		0.577
(1.00) 		0.824
(1.00) 		0.224
(1.00) 		0.228
(1.00) 		0.904
(1.00) 		0.545
(1.00) 		0.794
(1.00) 		1
(1.00)
DACT1 10 (6%) 162 0.192
(1.00) 		0.157
(1.00) 		0.473
(1.00) 		0.331
(1.00) 		0.221
(1.00) 		0.506
(1.00) 		0.419
(1.00) 		0.392
(1.00) 		0.753
(1.00) 		0.659
(1.00) 		0.683
(1.00) 		0.355
(1.00)
APC 10 (6%) 162 0.33
(1.00) 		0.514
(1.00) 		0.884
(1.00) 		1
(1.00) 		0.245
(1.00) 		0.00496
(1.00) 		0.00898
(1.00) 		0.023
(1.00) 		0.0711
(1.00) 		0.0768
(1.00)
SCG2 8 (5%) 164 0.324
(1.00) 		0.375
(1.00) 		0.674
(1.00) 		0.157
(1.00) 		0.17
(1.00) 		0.66
(1.00) 		0.888
(1.00) 		0.668
(1.00) 		1
(1.00) 		0.815
(1.00)
THEMIS 10 (6%) 162 0.53
(1.00) 		1
(1.00) 		0.202
(1.00) 		0.0686
(1.00) 		0.884
(1.00) 		1
(1.00) 		0.896
(1.00) 		0.717
(1.00) 		0.391
(1.00) 		0.705
(1.00) 		0.322
(1.00) 		0.329
(1.00)
BRE 4 (2%) 168 0.679
(1.00) 		0.0253
(1.00) 		0.845
(1.00) 		1
(1.00) 		0.171
(1.00) 		0.343
(1.00)
SERPINB13 9 (5%) 163 0.447
(1.00) 		0.731
(1.00) 		0.884
(1.00) 		0.212
(1.00) 		0.694
(1.00) 		0.175
(1.00) 		0.395
(1.00) 		0.0443
(1.00) 		0.0252
(1.00) 		0.0164
(1.00)
GATA3 6 (3%) 166 0.365
(1.00) 		0.706
(1.00) 		0.591
(1.00) 		0.762
(1.00) 		0.517
(1.00) 		0.469
(1.00) 		0.483
(1.00)
GNG2 4 (2%) 168 0.416
(1.00) 		0.496
(1.00) 		0.744
(1.00) 		0.394
(1.00) 		0.0292
(1.00) 		0.0186
(1.00) 		0.171
(1.00) 		0.343
(1.00) 		1
(1.00) 		0.723
(1.00)
TSHZ3 25 (15%) 147 0.0514
(1.00) 		0.0219
(1.00) 		0.202
(1.00) 		0.884
(1.00) 		0.468
(1.00) 		0.165
(1.00) 		0.24
(1.00) 		0.043
(1.00) 		0.461
(1.00) 		0.0814
(1.00) 		0.35
(1.00) 		0.882
(1.00)
FGB 10 (6%) 162 0.394
(1.00) 		0.292
(1.00) 		1
(1.00) 		1
(1.00) 		0.995
(1.00) 		0.847
(1.00) 		0.511
(1.00) 		0.896
(1.00) 		0.101
(1.00) 		0.837
(1.00)
PDGFA 5 (3%) 167 0.343
(1.00) 		0.0686
(1.00) 		0.289
(1.00) 		0.639
(1.00) 		0.474
(1.00) 		1
(1.00) 		0.851
(1.00) 		1
(1.00) 		0.322
(1.00) 		0.329
(1.00)
F8 15 (9%) 157 1
(1.00) 		0.418
(1.00) 		0.401
(1.00) 		0.727
(1.00) 		0.919
(1.00) 		0.71
(1.00) 		0.227
(1.00) 		0.378
(1.00) 		0.47
(1.00) 		0.238
(1.00) 		0.914
(1.00) 		0.893
(1.00)
EPHB6 19 (11%) 153 0.719
(1.00) 		0.0587
(1.00) 		0.552
(1.00) 		0.447
(1.00) 		0.481
(1.00) 		0.439
(1.00) 		0.563
(1.00) 		0.22
(1.00) 		0.823
(1.00) 		0.56
(1.00)
CTRC 4 (2%) 168 1
(1.00) 		0.465
(1.00) 		0.289
(1.00) 		0.639
(1.00) 		0.787
(1.00) 		1
(1.00) 		1
(1.00) 		0.176
(1.00) 		0.818
(1.00) 		1
(1.00)
C12ORF74 3 (2%) 169 1
(1.00) 		0.409
(1.00) 		0.109
(1.00) 		0.119
(1.00) 		0.0754
(1.00)
DENND2A 9 (5%) 163 0.329
(1.00) 		0.00776
(1.00) 		0.426
(1.00) 		1
(1.00) 		0.0599
(1.00) 		0.175
(1.00) 		0.0596
(1.00) 		0.149
(1.00) 		0.482
(1.00) 		0.472
(1.00)
POF1B 9 (5%) 163 0.74
(1.00) 		0.225
(1.00) 		0.136
(1.00) 		0.874
(1.00) 		0.534
(1.00) 		0.358
(1.00) 		0.715
(1.00) 		0.108
(1.00) 		0.44
(1.00) 		0.815
(1.00)
TMTC1 22 (13%) 150 0.236
(1.00) 		0.308
(1.00) 		0.0499
(1.00) 		0.877
(1.00) 		0.496
(1.00) 		0.331
(1.00) 		0.635
(1.00) 		0.582
(1.00) 		0.492
(1.00) 		0.55
(1.00) 		0.597
(1.00) 		0.475
(1.00)
OR2F2 6 (3%) 166 0.745
(1.00) 		0.582
(1.00) 		0.859
(1.00) 		1
(1.00) 		0.463
(1.00) 		0.593
(1.00) 		0.273
(1.00) 		0.483
(1.00) 		0.681
(1.00) 		0.589
(1.00)
SPATA18 8 (5%) 164 0.899
(1.00) 		1
(1.00) 		0.195
(1.00) 		0.13
(1.00) 		0.74
(1.00) 		0.905
(1.00) 		1
(1.00) 		0.771
(1.00) 		0.192
(1.00) 		1
(1.00)
FSCB 15 (9%) 157 0.619
(1.00) 		0.265
(1.00) 		0.226
(1.00) 		0.133
(1.00) 		0.254
(1.00) 		0.0212
(1.00) 		0.0326
(1.00) 		0.183
(1.00) 		0.0252
(1.00) 		0.252
(1.00)
CDH6 17 (10%) 155 0.247
(1.00) 		0.651
(1.00) 		0.53
(1.00) 		0.884
(1.00) 		0.457
(1.00) 		0.39
(1.00) 		0.0555
(1.00) 		0.213
(1.00) 		0.177
(1.00) 		0.429
(1.00) 		0.778
(1.00) 		0.633
(1.00)
TTC18 5 (3%) 167 1
(1.00) 		0.639
(1.00) 		0.495
(1.00) 		0.62
(1.00) 		0.0564
(1.00) 		0.171
(1.00) 		0.343
(1.00)
NALCN 24 (14%) 148 0.658
(1.00) 		0.505
(1.00) 		0.277
(1.00) 		0.791
(1.00) 		0.713
(1.00) 		0.883
(1.00) 		0.849
(1.00) 		0.58
(1.00) 		0.851
(1.00) 		0.865
(1.00) 		0.751
(1.00) 		0.717
(1.00)
ABCB5 19 (11%) 153 0.12
(1.00) 		0.102
(1.00) 		0.414
(1.00) 		0.445
(1.00) 		0.818
(1.00) 		0.717
(1.00) 		0.125
(1.00) 		0.296
(1.00) 		0.488
(1.00) 		0.338
(1.00) 		0.71
(1.00) 		0.321
(1.00)
OR5I1 11 (6%) 161 0.721
(1.00) 		0.914
(1.00) 		0.781
(1.00) 		0.324
(1.00) 		0.748
(1.00) 		0.919
(1.00) 		0.0455
(1.00) 		0.498
(1.00) 		0.353
(1.00) 		0.893
(1.00)
COL5A1 13 (8%) 159 0.642
(1.00) 		1
(1.00) 		0.332
(1.00) 		0.357
(1.00) 		0.804
(1.00) 		0.77
(1.00) 		0.592
(1.00) 		0.379
(1.00) 		0.902
(1.00) 		0.52
(1.00)
ITGAX 17 (10%) 155 0.192
(1.00) 		0.308
(1.00) 		1
(1.00) 		1
(1.00) 		0.927
(1.00) 		0.861
(1.00) 		0.271
(1.00) 		0.279
(1.00) 		0.129
(1.00) 		0.898
(1.00) 		0.714
(1.00) 		0.658
(1.00)
SVEP1 21 (12%) 151 0.641
(1.00) 		0.591
(1.00) 		1
(1.00) 		0.445
(1.00) 		0.743
(1.00) 		0.289
(1.00) 		0.975
(1.00) 		0.878
(1.00) 		0.359
(1.00) 		0.477
(1.00) 		0.395
(1.00) 		0.363
(1.00)
FBXL7 17 (10%) 155 0.236
(1.00) 		0.308
(1.00) 		0.196
(1.00) 		0.012
(1.00) 		0.597
(1.00) 		0.396
(1.00) 		0.274
(1.00) 		0.117
(1.00) 		0.539
(1.00) 		0.165
(1.00) 		0.36
(1.00) 		0.472
(1.00)
RP1L1 32 (19%) 140 0.641
(1.00) 		0.591
(1.00) 		0.166
(1.00) 		0.579
(1.00) 		0.502
(1.00) 		0.389
(1.00) 		0.336
(1.00) 		0.522
(1.00) 		0.756
(1.00) 		0.363
(1.00) 		0.662
(1.00) 		0.176
(1.00)
DEFB112 4 (2%) 168 0.679
(1.00) 		1
(1.00) 		1
(1.00) 		0.396
(1.00) 		0.264
(1.00) 		0.289
(1.00) 		0.512
(1.00)
ARID2 12 (7%) 160 0.53
(1.00) 		0.508
(1.00) 		0.26
(1.00) 		1
(1.00) 		0.0653
(1.00) 		0.101
(1.00) 		0.301
(1.00) 		0.524
(1.00) 		0.564
(1.00) 		0.625
(1.00) 		0.865
(1.00) 		0.589
(1.00)
ANKRD44 9 (5%) 163 0.74
(1.00) 		0.231
(1.00) 		0.577
(1.00) 		0.7
(1.00) 		0.934
(1.00) 		0.905
(1.00) 		1
(1.00) 		0.705
(1.00) 		0.902
(1.00) 		0.883
(1.00)
OR4C16 14 (8%) 158 0.226
(1.00) 		0.371
(1.00) 		0.231
(1.00) 		0.65
(1.00) 		0.132
(1.00) 		0.423
(1.00) 		0.422
(1.00) 		0.724
(1.00) 		0.101
(1.00) 		0.365
(1.00)
EPS8L3 4 (2%) 168 0.416
(1.00) 		1
(1.00) 		0.577
(1.00) 		0.588
(1.00) 		0.835
(1.00) 		0.171
(1.00) 		0.343
(1.00)
GPR158 17 (10%) 155 0.0895
(1.00) 		0.131
(1.00) 		0.6
(1.00) 		0.65
(1.00) 		0.0394
(1.00) 		0.002
(1.00) 		0.0399
(1.00) 		0.0111
(1.00) 		0.437
(1.00) 		0.127
(1.00)
SPEG 16 (9%) 156 0.335
(1.00) 		1
(1.00) 		0.311
(1.00) 		0.212
(1.00) 		0.457
(1.00) 		0.0829
(1.00) 		0.335
(1.00) 		0.854
(1.00) 		0.782
(1.00) 		0.27
(1.00) 		0.433
(1.00) 		0.251
(1.00)
TARS2 8 (5%) 164 1
(1.00) 		1
(1.00) 		0.324
(1.00) 		0.0234
(1.00) 		0.164
(1.00) 		0.21
(1.00) 		0.475
(1.00) 		0.248
(1.00) 		0.715
(1.00) 		0.771
(1.00) 		0.818
(1.00) 		0.318
(1.00)
OR2T27 8 (5%) 164 0.216
(1.00) 		1
(1.00) 		0.386
(1.00) 		0.26
(1.00) 		0.683
(1.00) 		0.66
(1.00) 		0.142
(1.00) 		0.375
(1.00) 		0.36
(1.00) 		0.297
(1.00)
GPR174 6 (3%) 166 0.868
(1.00) 		0.618
(1.00) 		0.859
(1.00) 		0.45
(1.00) 		0.925
(1.00) 		0.682
(1.00) 		0.392
(1.00) 		0.25
(1.00) 		1
(1.00) 		0.815
(1.00)
KIF9 7 (4%) 165 1
(1.00) 		0.687
(1.00) 		0.312
(1.00) 		0.0303
(1.00) 		0.0961
(1.00) 		0.707
(1.00) 		0.677
(1.00) 		0.0925
(1.00) 		1
(1.00) 		0.437
(1.00)
C1ORF173 25 (15%) 147 0.59
(1.00) 		0.651
(1.00) 		0.793
(1.00) 		0.104
(1.00) 		0.228
(1.00) 		0.461
(1.00) 		0.94
(1.00) 		0.818
(1.00) 		0.0915
(1.00) 		0.0108
(1.00) 		0.228
(1.00) 		0.441
(1.00)
CYP1A1 4 (2%) 168 0.679
(1.00) 		1
(1.00) 		1
(1.00) 		0.27
(1.00) 		0.835
(1.00) 		0.289
(1.00) 		0.512
(1.00)
ENAH 4 (2%) 168 0.679
(1.00) 		0.0686
(1.00) 		0.289
(1.00) 		1
(1.00) 		0.396
(1.00) 		0.688
(1.00) 		0.662
(1.00) 		1
(1.00) 		0.455
(1.00) 		0.155
(1.00)
SH2D2A 6 (3%) 166 0.0482
(1.00) 		1
(1.00) 		0.455
(1.00) 		0.043
(1.00) 		0.0216
(1.00) 		0.22
(1.00) 		0.857
(1.00) 		0.715
(1.00) 		0.114
(1.00) 		0.203
(1.00)
CD5L 12 (7%) 160 0.796
(1.00) 		0.0159
(1.00) 		0.295
(1.00) 		0.69
(1.00) 		0.594
(1.00) 		1
(1.00) 		1
(1.00) 		0.477
(1.00) 		1
(1.00) 		0.789
(1.00)
ANKRD56 11 (6%) 161 0.721
(1.00) 		1
(1.00) 		0.859
(1.00) 		0.725
(1.00) 		0.717
(1.00) 		0.329
(1.00) 		0.128
(1.00) 		0.221
(1.00) 		1
(1.00) 		0.77
(1.00)
HOXA5 6 (3%) 166 0.306
(1.00) 		0.279
(1.00) 		0.839
(1.00) 		0.171
(1.00) 		0.62
(1.00) 		0.162
(1.00) 		0.00623
(1.00) 		0.102
(1.00) 		0.0972
(1.00) 		0.0892
(1.00)
FERD3L 7 (4%) 165 1
(1.00) 		0.731
(1.00) 		0.859
(1.00) 		0.45
(1.00) 		0.92
(1.00) 		1
(1.00) 		0.0723
(1.00) 		0.217
(1.00) 		0.715
(1.00) 		1
(1.00)
SIRPB1 6 (3%) 166 0.868
(1.00) 		0.225
(1.00) 		1
(1.00) 		0.725
(1.00) 		0.63
(1.00) 		1
(1.00) 		0.149
(1.00) 		0.483
(1.00) 		0.611
(1.00) 		0.815
(1.00)
COL3A1 22 (13%) 150 0.856
(1.00) 		0.453
(1.00) 		0.771
(1.00) 		0.104
(1.00) 		0.552
(1.00) 		0.694
(1.00) 		0.928
(1.00) 		0.295
(1.00) 		0.373
(1.00) 		0.185
(1.00) 		1
(1.00) 		0.48
(1.00)
GTF2I 3 (2%) 169 1
(1.00) 		0.875
(1.00) 		0.642
(1.00) 		1
(1.00) 		0.222
(1.00)
RUFY2 6 (3%) 166 0.868
(1.00) 		0.731
(1.00) 		0.706
(1.00) 		0.0936
(1.00) 		0.498
(1.00) 		0.517
(1.00) 		0.851
(1.00) 		0.815
(1.00) 		0.209
(1.00) 		1
(1.00)
VPS13C 19 (11%) 153 0.0352
(1.00) 		0.14
(1.00) 		0.762
(1.00) 		0.321
(1.00) 		0.0945
(1.00) 		0.0974
(1.00) 		0.477
(1.00) 		0.851
(1.00) 		0.26
(1.00) 		0.338
(1.00) 		0.754
(1.00) 		0.789
(1.00)
TBX15 11 (6%) 161 0.28
(1.00) 		0.225
(1.00) 		0.729
(1.00) 		1
(1.00) 		0.704
(1.00) 		0.358
(1.00) 		0.265
(1.00) 		0.0512
(1.00) 		0.76
(1.00) 		0.194
(1.00)
XIRP2 47 (27%) 125 0.308
(1.00) 		0.466
(1.00) 		0.866
(1.00) 		0.707
(1.00) 		0.329
(1.00) 		0.375
(1.00) 		0.054
(1.00) 		0.073
(1.00) 		0.569
(1.00) 		0.275
(1.00) 		1
(1.00) 		0.583
(1.00)
HOXA3 6 (3%) 166 0.365
(1.00) 		0.444
(1.00) 		0.577
(1.00) 		1
(1.00) 		0.431
(1.00) 		0.593
(1.00) 		0.753
(1.00) 		0.483
(1.00) 		0.118
(1.00) 		0.238
(1.00)
KDR 20 (12%) 152 0.28
(1.00) 		0.215
(1.00) 		0.0973
(1.00) 		0.322
(1.00) 		0.655
(1.00) 		0.259
(1.00) 		0.433
(1.00) 		0.679
(1.00) 		0.739
(1.00) 		0.338
(1.00) 		0.162
(1.00) 		0.0739
(1.00)
OR56A4 6 (3%) 166 0.868
(1.00) 		1
(1.00) 		0.816
(1.00) 		0.62
(1.00) 		0.116
(1.00) 		0.392
(1.00) 		0.102
(1.00)
HCK 6 (3%) 166 0.0287
(1.00) 		0.496
(1.00) 		0.577
(1.00) 		0.171
(1.00) 		0.667
(1.00) 		0.738
(1.00) 		0.753
(1.00) 		0.483
(1.00) 		1
(1.00) 		0.723
(1.00)
SPTA1 48 (28%) 124 0.46
(1.00) 		0.465
(1.00) 		0.089
(1.00) 		0.0023
(1.00) 		1
(1.00) 		0.773
(1.00) 		0.107
(1.00) 		0.0713
(1.00) 		0.215
(1.00) 		0.132
(1.00) 		0.439
(1.00) 		0.187
(1.00)
BRS3 7 (4%) 165 0.05
(1.00) 		0.514
(1.00) 		1
(1.00) 		0.283
(1.00) 		0.00673
(1.00) 		0.391
(1.00) 		0.473
(1.00) 		0.379
(1.00) 		0.611
(1.00) 		0.815
(1.00)
LPPR4 14 (8%) 158 0.656
(1.00) 		0.508
(1.00) 		1
(1.00) 		0.417
(1.00) 		0.234
(1.00) 		0.44
(1.00) 		0.255
(1.00) 		0.592
(1.00) 		1
(1.00) 		0.92
(1.00) 		0.902
(1.00) 		0.658
(1.00)
KDM5C 8 (5%) 164 0.41
(1.00) 		0.193
(1.00) 		1
(1.00) 		0.191
(1.00) 		0.196
(1.00) 		0.0762
(1.00) 		0.352
(1.00) 		0.191
(1.00) 		1
(1.00) 		0.458
(1.00)
TRPC1 7 (4%) 165 0.36
(1.00) 		0.875
(1.00) 		0.38
(1.00) 		0.297
(1.00) 		0.492
(1.00) 		0.122
(1.00) 		1
(1.00) 		0.752
(1.00) 		0.482
(1.00) 		1
(1.00)
AOAH 8 (5%) 164 0.573
(1.00) 		0.247
(1.00) 		0.164
(1.00) 		0.755
(1.00) 		0.95
(1.00) 		0.817
(1.00) 		0.552
(1.00) 		0.668
(1.00) 		1
(1.00) 		0.712
(1.00)
C9ORF64 3 (2%) 169 0.0502
(1.00) 		0.591
(1.00) 		0.794
(1.00) 		1
(1.00) 		1
(1.00) 		0.203
(1.00) 		0.027
(1.00) 		0.407
(1.00) 		0.512
(1.00)
ZNF260 4 (2%) 168 0.318
(1.00) 		1
(1.00) 		0.275
(1.00) 		1
(1.00) 		0.0282
(1.00) 		0.552
(1.00) 		0.511
(1.00) 		0.434
(1.00) 		0.348
(1.00) 		0.437
(1.00)
OLAH 7 (4%) 165 0.05
(1.00) 		0.103
(1.00) 		0.308
(1.00) 		0.00485
(1.00) 		0.000389
(0.709) 		0.00945
(1.00) 		0.0189
(1.00) 		0.0791
(1.00) 		0.272
(1.00) 		0.589
(1.00)
GRK5 7 (4%) 165 1
(1.00) 		0.419
(1.00) 		1
(1.00) 		0.85
(1.00) 		0.92
(1.00) 		1
(1.00) 		0.291
(1.00) 		0.452
(1.00) 		0.715
(1.00) 		0.637
(1.00)
ATM 15 (9%) 157 0.139
(1.00) 		0.00375
(1.00) 		0.49
(1.00) 		0.115
(1.00) 		0.0681
(1.00) 		0.161
(1.00) 		0.303
(1.00) 		0.233
(1.00) 		0.509
(1.00) 		0.174
(1.00)
C1ORF49 6 (3%) 166 0.0287
(1.00) 		0.117
(1.00) 		0.308
(1.00) 		0.171
(1.00) 		0.248
(1.00) 		0.517
(1.00) 		0.753
(1.00) 		1
(1.00) 		0.365
(1.00) 		0.238
(1.00)
MFSD8 5 (3%) 167 0.0235
(1.00) 		0.0127
(1.00) 		0.516
(1.00) 		0.639
(1.00) 		0.283
(1.00) 		0.0171
(1.00) 		0.525
(1.00) 		0.0894
(1.00) 		0.198
(1.00)
LELP1 3 (2%) 169 0.311
(1.00) 		0.0253
(1.00) 		0.248
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
OR4A15 14 (8%) 158 0.00079
(1.00) 		0.231
(1.00) 		0.668
(1.00) 		0.44
(1.00) 		0.0694
(1.00) 		0.031
(1.00) 		0.143
(1.00) 		0.0357
(1.00) 		0.175
(1.00) 		0.0863
(1.00)
FCRL4 7 (4%) 165 1
(1.00) 		0.0686
(1.00) 		0.622
(1.00) 		0.0417
(1.00) 		0.647
(1.00) 		0.774
(1.00) 		1
(1.00) 		0.113
(1.00) 		1
(1.00) 		0.723
(1.00)
NT5DC3 5 (3%) 167 0.842
(1.00) 		0.687
(1.00) 		0.149
(1.00) 		0.486
(1.00) 		0.975
(1.00) 		0.103
(1.00) 		0.583
(1.00) 		0.414
(1.00) 		0.681
(1.00) 		1
(1.00)
PTH 3 (2%) 169 0.794
(1.00) 		0.824
(1.00) 		1
(1.00) 		0.76
(1.00) 		0.699
(1.00)
NAALAD2 9 (5%) 163 0.823
(1.00) 		0.768
(1.00) 		0.308
(1.00) 		0.591
(1.00) 		0.312
(1.00) 		0.137
(1.00) 		0.0216
(1.00) 		0.0452
(1.00) 		0.76
(1.00) 		0.0497
(1.00)
C8ORF37 6 (3%) 166 0.365
(1.00) 		0.155
(1.00) 		0.577
(1.00) 		0.486
(1.00) 		0.942
(1.00) 		0.377
(1.00) 		0.273
(1.00) 		1
(1.00) 		0.568
(1.00) 		1
(1.00)
IL18RAP 5 (3%) 167 0.42
(1.00) 		1
(1.00) 		0.639
(1.00) 		0.816
(1.00) 		0.388
(1.00) 		0.738
(1.00) 		0.485
(1.00) 		0.815
(1.00) 		0.601
(1.00) 		0.723
(1.00)
STAC3 3 (2%) 169 1
(1.00) 		1
(1.00) 		0.394
(1.00) 		0.391
(1.00) 		1
(1.00) 		0.289
(1.00) 		0.512
(1.00)
TAAR5 7 (4%) 165 0.143
(1.00) 		1
(1.00) 		0.0139
(1.00) 		0.7
(1.00) 		0.531
(1.00) 		0.261
(1.00) 		0.392
(1.00) 		0.25
(1.00) 		0.0972
(1.00) 		0.0144
(1.00)
C2ORF39 8 (5%) 164 0.42
(1.00) 		0.412
(1.00) 		0.41
(1.00) 		0.384
(1.00) 		0.639
(1.00) 		0.495
(1.00) 		0.5
(1.00) 		0.218
(1.00) 		0.352
(1.00) 		0.375
(1.00)
OR13G1 9 (5%) 163 1
(1.00) 		1
(1.00) 		0.268
(1.00) 		0.568
(1.00) 		0.495
(1.00) 		0.393
(1.00) 		0.395
(1.00) 		0.191
(1.00) 		1
(1.00) 		0.238
(1.00)
OR2G2 12 (7%) 160 0.728
(1.00) 		1
(1.00) 		0.858
(1.00) 		0.795
(1.00) 		0.126
(1.00) 		0.134
(1.00) 		0.313
(1.00) 		0.486
(1.00) 		0.918
(1.00) 		0.136
(1.00) 		0.715
(1.00) 		1
(1.00)
BTK 7 (4%) 165 0.694
(1.00) 		0.193
(1.00) 		0.341
(1.00) 		0.677
(1.00) 		0.752
(1.00)
ADAMTS2 14 (8%) 158 0.661
(1.00) 		0.723
(1.00) 		0.716
(1.00) 		0.898
(1.00) 		0.327
(1.00) 		0.149
(1.00) 		0.522
(1.00) 		0.301
(1.00) 		0.786
(1.00) 		0.87
(1.00)
REG1B 13 (8%) 159 0.912
(1.00) 		1
(1.00) 		0.476
(1.00) 		0.331
(1.00) 		0.375
(1.00) 		0.457
(1.00) 		0.479
(1.00) 		0.671
(1.00) 		0.227
(1.00) 		0.909
(1.00) 		0.865
(1.00) 		0.589
(1.00)
COL5A2 18 (10%) 154 0.62
(1.00) 		0.467
(1.00) 		0.157
(1.00) 		0.365
(1.00) 		0.433
(1.00) 		0.331
(1.00) 		0.013
(1.00) 		0.0432
(1.00) 		0.793
(1.00) 		0.663
(1.00)
NHEDC1 9 (5%) 163 1
(1.00) 		0.419
(1.00) 		0.51
(1.00) 		0.235
(1.00) 		0.327
(1.00) 		0.393
(1.00) 		0.274
(1.00) 		0.0452
(1.00) 		0.263
(1.00) 		0.194
(1.00)
DGKB 11 (6%) 161 0.223
(1.00) 		1
(1.00) 		0.0537
(1.00) 		0.0567
(1.00) 		0.0491
(1.00) 		0.129
(1.00) 		0.41
(1.00) 		0.498
(1.00) 		1
(1.00) 		0.565
(1.00)
IL1RAPL1 11 (6%) 161 0.901
(1.00) 		0.818
(1.00) 		0.509
(1.00) 		0.582
(1.00) 		0.769
(1.00) 		1
(1.00) 		0.197
(1.00) 		0.205
(1.00) 		0.918
(1.00) 		0.0679
(1.00) 		0.0382
(1.00) 		0.0768
(1.00)
SEMA5A 15 (9%) 157 0.236
(1.00) 		0.308
(1.00) 		0.555
(1.00) 		0.654
(1.00) 		0.214
(1.00) 		0.228
(1.00) 		0.421
(1.00) 		0.328
(1.00) 		0.685
(1.00) 		0.233
(1.00) 		0.914
(1.00) 		0.57
(1.00)
COL25A1 11 (6%) 161 0.192
(1.00) 		0.591
(1.00) 		0.845
(1.00) 		0.723
(1.00) 		0.62
(1.00) 		0.786
(1.00) 		0.609
(1.00) 		0.859
(1.00) 		0.918
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
BHMT 5 (3%) 167 0.0333
(1.00) 		0.102
(1.00) 		0.516
(1.00) 		1
(1.00) 		0.816
(1.00) 		0.62
(1.00) 		0.738
(1.00) 		0.851
(1.00) 		1
(1.00)
CXCL6 4 (2%) 168 0.679
(1.00) 		0.193
(1.00) 		0.639
(1.00) 		1
(1.00) 		0.396
(1.00) 		0.688
(1.00) 		0.306
(1.00) 		0.343
(1.00) 		0.601
(1.00) 		0.723
(1.00)
MUC16 78 (45%) 94 0.172
(1.00) 		0.408
(1.00) 		0.349
(1.00) 		0.253
(1.00) 		0.0969
(1.00) 		0.153
(1.00) 		0.359
(1.00) 		0.11
(1.00) 		0.588
(1.00) 		0.456
(1.00) 		0.964
(1.00) 		0.803
(1.00)
DYDC2 3 (2%) 169 0.412
(1.00) 		0.875
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
CLEC12B 3 (2%) 169 0.794
(1.00) 		0.14
(1.00) 		0.139
(1.00) 		0.875
(1.00) 		0.642
(1.00) 		0.76
(1.00) 		0.699
(1.00)
AKR1B10 4 (2%) 168 1
(1.00) 		0.383
(1.00) 		0.289
(1.00) 		0.386
(1.00) 		0.379
(1.00) 		0.264
(1.00) 		1
(1.00) 		1
(1.00) 		0.818
(1.00) 		0.589
(1.00)
CMA1 4 (2%) 168 0.53
(1.00) 		1
(1.00) 		0.231
(1.00) 		0.389
(1.00) 		1
(1.00) 		0.784
(1.00) 		0.322
(1.00) 		0.329
(1.00)
STX2 4 (2%) 168 1
(1.00) 		0.634
(1.00) 		0.639
(1.00) 		1
(1.00) 		0.396
(1.00) 		0.688
(1.00) 		0.306
(1.00) 		0.176
(1.00) 		1
(1.00) 		0.458
(1.00)
AQP10 6 (3%) 166 0.0745
(1.00) 		0.185
(1.00) 		0.706
(1.00) 		0.7
(1.00) 		0.942
(1.00) 		1
(1.00) 		0.469
(1.00) 		0.25
(1.00) 		0.601
(1.00) 		0.723
(1.00)
P2RX7 4 (2%) 168 0.53
(1.00) 		0.384
(1.00) 		1
(1.00) 		1
(1.00) 		0.588
(1.00) 		1
(1.00) 		0.171
(1.00) 		0.343
(1.00) 		0.601
(1.00) 		0.723
(1.00)
POLR3B 11 (6%) 161 0.192
(1.00) 		0.157
(1.00) 		0.0561
(1.00) 		0.863
(1.00) 		0.432
(1.00) 		0.498
(1.00) 		0.567
(1.00) 		0.329
(1.00) 		0.224
(1.00) 		0.023
(1.00) 		0.611
(1.00) 		0.815
(1.00)
NETO1 14 (8%) 158 0.0342
(1.00) 		0.848
(1.00) 		0.775
(1.00) 		0.916
(1.00) 		0.611
(1.00) 		0.394
(1.00) 		0.636
(1.00) 		0.804
(1.00) 		0.757
(1.00) 		0.639
(1.00)
MGAT4C 7 (4%) 165 0.12
(1.00) 		0.102
(1.00) 		0.783
(1.00) 		0.687
(1.00) 		0.36
(1.00) 		0.874
(1.00) 		0.904
(1.00) 		0.796
(1.00) 		0.677
(1.00) 		0.871
(1.00) 		0.681
(1.00) 		1
(1.00)
SLC34A2 8 (5%) 164 0.282
(1.00) 		0.618
(1.00) 		0.289
(1.00) 		0.639
(1.00) 		0.419
(1.00) 		0.817
(1.00) 		0.552
(1.00) 		0.771
(1.00) 		1
(1.00) 		0.815
(1.00)
NTRK1 7 (4%) 165 0.783
(1.00) 		1
(1.00) 		0.38
(1.00) 		0.0649
(1.00) 		0.598
(1.00) 		0.892
(1.00) 		0.205
(1.00) 		0.379
(1.00) 		0.794
(1.00) 		0.723
(1.00)
DYTN 10 (6%) 162 1
(1.00) 		1
(1.00) 		0.577
(1.00) 		0.885
(1.00) 		1
(1.00) 		1
(1.00) 		0.111
(1.00) 		0.057
(1.00) 		0.425
(1.00) 		0.659
(1.00) 		0.263
(1.00) 		0.297
(1.00)
VEGFC 9 (5%) 163 0.405
(1.00) 		0.225
(1.00) 		0.205
(1.00) 		0.181
(1.00) 		0.181
(1.00) 		0.0739
(1.00) 		0.904
(1.00) 		0.705
(1.00) 		0.44
(1.00) 		0.815
(1.00)
GC 5 (3%) 167 0.139
(1.00) 		1
(1.00) 		0.706
(1.00) 		0.129
(1.00) 		0.22
(1.00) 		1
(1.00) 		0.2
(1.00) 		0.3
(1.00)
EHHADH 4 (2%) 168 0.246
(1.00) 		0.634
(1.00) 		1
(1.00) 		0.639
(1.00) 		0.787
(1.00) 		0.112
(1.00) 		1
(1.00) 		0.784
(1.00) 		0.794
(1.00) 		1
(1.00)
ABCG5 9 (5%) 163 1
(1.00) 		0.0746
(1.00) 		0.769
(1.00) 		0.0232
(1.00) 		0.369
(1.00) 		0.834
(1.00) 		0.904
(1.00) 		0.705
(1.00) 		1
(1.00) 		0.712
(1.00)
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CDKN2A MUTATED 3 3 2
CDKN2A WILD-TYPE 64 69 31
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CDKN2A MUTATED 0 1 2
CDKN2A WILD-TYPE 34 32 41
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CDKN2A MUTATED 3 1 3
CDKN2A WILD-TYPE 70 22 36
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CDKN2A MUTATED 4 1 2
CDKN2A WILD-TYPE 73 25 30
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Chi-square test), Q value = 1

Table S5.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CDKN2A MUTATED 3 0 2 2 1
CDKN2A WILD-TYPE 55 37 27 32 12
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CDKN2A MUTATED 4 2 2
CDKN2A WILD-TYPE 48 61 54
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CDKN2A MUTATED 3 4 1
CDKN2A WILD-TYPE 56 76 28
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CDKN2A MUTATED 1 3 4
CDKN2A WILD-TYPE 19 88 53
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CDKN2A MUTATED 2 0 1
CDKN2A WILD-TYPE 44 35 23
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CDKN2A MUTATED 1 0 2
CDKN2A WILD-TYPE 10 46 46
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
KRAS MUTATED 2 3 3 1
KRAS WILD-TYPE 3 6 9 5
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
KRAS MUTATED 2 3 4
KRAS WILD-TYPE 5 10 8
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KRAS MUTATED 13 20 14
KRAS WILD-TYPE 54 52 19
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KRAS MUTATED 10 9 8
KRAS WILD-TYPE 24 24 35
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KRAS MUTATED 15 9 9
KRAS WILD-TYPE 58 14 30
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KRAS MUTATED 14 10 9
KRAS WILD-TYPE 63 16 23
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Chi-square test), Q value = 1

Table S17.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KRAS MUTATED 14 12 10 8 2
KRAS WILD-TYPE 44 25 19 26 11
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KRAS MUTATED 12 19 15
KRAS WILD-TYPE 40 44 41
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KRAS MUTATED 24 16 5
KRAS WILD-TYPE 35 64 24

Figure S1.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KRAS MUTATED 3 21 21
KRAS WILD-TYPE 17 70 36
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S21.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KRAS MUTATED 16 6 5
KRAS WILD-TYPE 30 29 19
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S22.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KRAS MUTATED 2 9 16
KRAS WILD-TYPE 9 37 32
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00576 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
TP53 MUTATED 1 6 3 6
TP53 WILD-TYPE 4 3 9 0

Figure S2.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
TP53 MUTATED 6 4 6
TP53 WILD-TYPE 1 9 6
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 3.33e-05 (Fisher's exact test), Q value = 0.061

Table S25.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TP53 MUTATED 47 23 17
TP53 WILD-TYPE 20 49 16

Figure S3.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TP53 MUTATED 17 21 21
TP53 WILD-TYPE 17 12 22
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.000579 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TP53 MUTATED 37 5 28
TP53 WILD-TYPE 36 18 11

Figure S4.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3.8e-05 (Fisher's exact test), Q value = 0.069

Table S28.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TP53 MUTATED 43 4 23
TP53 WILD-TYPE 34 22 9

Figure S5.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1.69e-05 (Chi-square test), Q value = 0.031

Table S29.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TP53 MUTATED 40 7 11 22 6
TP53 WILD-TYPE 18 30 18 12 7

Figure S6.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.000677 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TP53 MUTATED 34 20 32
TP53 WILD-TYPE 18 43 24

Figure S7.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00599 (Fisher's exact test), Q value = 1

Table S31.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TP53 MUTATED 20 48 17
TP53 WILD-TYPE 39 32 12

Figure S8.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 1

Table S32.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TP53 MUTATED 7 54 24
TP53 WILD-TYPE 13 37 33

Figure S9.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S33.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TP53 MUTATED 24 21 10
TP53 WILD-TYPE 22 14 14
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S34.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TP53 MUTATED 4 27 24
TP53 WILD-TYPE 7 19 24
'EGFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
EGFR MUTATED 13 7 2
EGFR WILD-TYPE 54 65 31
'EGFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
EGFR MUTATED 4 4 5
EGFR WILD-TYPE 30 29 38
'EGFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
EGFR MUTATED 13 1 3
EGFR WILD-TYPE 60 22 36
'EGFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
EGFR MUTATED 12 2 3
EGFR WILD-TYPE 65 24 29
'EGFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.057 (Chi-square test), Q value = 1

Table S39.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
EGFR MUTATED 10 7 0 2 3
EGFR WILD-TYPE 48 30 29 32 10
'EGFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
EGFR MUTATED 7 12 3
EGFR WILD-TYPE 45 51 53
'EGFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S41.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
EGFR MUTATED 5 11 6
EGFR WILD-TYPE 54 69 23
'EGFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S42.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
EGFR MUTATED 5 12 5
EGFR WILD-TYPE 15 79 52
'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 1

Table S43.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
EGFR MUTATED 8 1 4
EGFR WILD-TYPE 38 34 20
'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S44.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
EGFR MUTATED 4 2 7
EGFR WILD-TYPE 7 44 41

Figure S10.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
STK11 MUTATED 0 0 2 1
STK11 WILD-TYPE 5 9 10 5
'STK11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
STK11 MUTATED 1 2 0
STK11 WILD-TYPE 6 11 12
'STK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
STK11 MUTATED 6 11 3
STK11 WILD-TYPE 61 61 30
'STK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
STK11 MUTATED 6 2 2
STK11 WILD-TYPE 28 31 41
'STK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
STK11 MUTATED 6 4 4
STK11 WILD-TYPE 67 19 35
'STK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
STK11 MUTATED 5 5 4
STK11 WILD-TYPE 72 21 28
'STK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00233 (Chi-square test), Q value = 1

Table S51.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
STK11 MUTATED 0 7 7 5 0
STK11 WILD-TYPE 58 30 22 29 13

Figure S11.  Get High-res Image Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 1

Table S52.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
STK11 MUTATED 0 9 10
STK11 WILD-TYPE 52 54 46

Figure S12.  Get High-res Image Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S53.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
STK11 MUTATED 7 7 4
STK11 WILD-TYPE 52 73 25
'STK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S54.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
STK11 MUTATED 0 11 7
STK11 WILD-TYPE 20 80 50
'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S55.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
STK11 MUTATED 6 1 3
STK11 WILD-TYPE 40 34 21
'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S56.  Gene #5: 'STK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
STK11 MUTATED 1 3 6
STK11 WILD-TYPE 10 43 42
'KEAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
KEAP1 MUTATED 0 0 3 1
KEAP1 WILD-TYPE 5 9 9 5
'KEAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
KEAP1 MUTATED 1 3 0
KEAP1 WILD-TYPE 6 10 12
'KEAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KEAP1 MUTATED 8 16 8
KEAP1 WILD-TYPE 59 56 25
'KEAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KEAP1 MUTATED 8 4 6
KEAP1 WILD-TYPE 26 29 37
'KEAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 1

Table S61.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KEAP1 MUTATED 9 7 9
KEAP1 WILD-TYPE 64 16 30
'KEAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S62.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KEAP1 MUTATED 9 7 9
KEAP1 WILD-TYPE 68 19 23
'KEAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000274 (Chi-square test), Q value = 0.5

Table S63.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KEAP1 MUTATED 3 8 13 7 1
KEAP1 WILD-TYPE 55 29 16 27 12

Figure S13.  Get High-res Image Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KEAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.000251 (Fisher's exact test), Q value = 0.46

Table S64.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KEAP1 MUTATED 3 9 20
KEAP1 WILD-TYPE 49 54 36

Figure S14.  Get High-res Image Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KEAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KEAP1 MUTATED 11 13 5
KEAP1 WILD-TYPE 48 67 24
'KEAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KEAP1 MUTATED 1 19 9
KEAP1 WILD-TYPE 19 72 48
'KEAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KEAP1 MUTATED 10 6 3
KEAP1 WILD-TYPE 36 29 21
'KEAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S68.  Gene #6: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KEAP1 MUTATED 0 9 10
KEAP1 WILD-TYPE 11 37 38
'RBM10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
RBM10 MUTATED 0 1 4 0
RBM10 WILD-TYPE 5 8 8 6
'RBM10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
RBM10 MUTATED 0 4 1
RBM10 WILD-TYPE 7 9 11
'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S71.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RBM10 MUTATED 3 6 3
RBM10 WILD-TYPE 64 66 30
'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S72.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RBM10 MUTATED 1 3 0
RBM10 WILD-TYPE 33 30 43
'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S73.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RBM10 MUTATED 3 1 2
RBM10 WILD-TYPE 70 22 37
'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RBM10 MUTATED 3 2 1
RBM10 WILD-TYPE 74 24 31
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.807 (Chi-square test), Q value = 1

Table S75.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RBM10 MUTATED 4 3 3 2 0
RBM10 WILD-TYPE 54 34 26 32 13
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RBM10 MUTATED 3 4 5
RBM10 WILD-TYPE 49 59 51
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S77.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RBM10 MUTATED 5 6 1
RBM10 WILD-TYPE 54 74 28
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S78.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RBM10 MUTATED 1 7 4
RBM10 WILD-TYPE 19 84 53
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RBM10 MUTATED 2 1 0
RBM10 WILD-TYPE 44 34 24
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S80.  Gene #7: 'RBM10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RBM10 MUTATED 0 3 0
RBM10 WILD-TYPE 11 43 48
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S81.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
NF1 MUTATED 0 2 2 1
NF1 WILD-TYPE 5 7 10 5
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S82.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
NF1 MUTATED 1 3 1
NF1 WILD-TYPE 6 10 11
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00671 (Fisher's exact test), Q value = 1

Table S83.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NF1 MUTATED 15 4 2
NF1 WILD-TYPE 52 68 31

Figure S15.  Get High-res Image Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S84.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NF1 MUTATED 6 7 4
NF1 WILD-TYPE 28 26 39
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NF1 MUTATED 11 3 4
NF1 WILD-TYPE 62 20 35
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S86.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NF1 MUTATED 10 3 5
NF1 WILD-TYPE 67 23 27
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Chi-square test), Q value = 1

Table S87.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NF1 MUTATED 10 2 2 4 2
NF1 WILD-TYPE 48 35 27 30 11
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NF1 MUTATED 8 5 7
NF1 WILD-TYPE 44 58 49
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 1

Table S89.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NF1 MUTATED 4 10 7
NF1 WILD-TYPE 55 70 22
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S90.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NF1 MUTATED 3 14 4
NF1 WILD-TYPE 17 77 53
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NF1 MUTATED 4 4 7
NF1 WILD-TYPE 42 31 17
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S92.  Gene #8: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NF1 MUTATED 1 9 5
NF1 WILD-TYPE 10 37 43
'GPR112 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S93.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
GPR112 MUTATED 1 3 2 0
GPR112 WILD-TYPE 4 6 10 6
'GPR112 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S94.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
GPR112 MUTATED 0 3 3
GPR112 WILD-TYPE 7 10 9
'GPR112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S95.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GPR112 MUTATED 17 10 8
GPR112 WILD-TYPE 50 62 25
'GPR112 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S96.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GPR112 MUTATED 6 10 7
GPR112 WILD-TYPE 28 23 36
'GPR112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S97.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GPR112 MUTATED 17 4 4
GPR112 WILD-TYPE 56 19 35
'GPR112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S98.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GPR112 MUTATED 17 4 4
GPR112 WILD-TYPE 60 22 28
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Chi-square test), Q value = 1

Table S99.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GPR112 MUTATED 15 4 5 9 2
GPR112 WILD-TYPE 43 33 24 25 11
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GPR112 MUTATED 10 11 14
GPR112 WILD-TYPE 42 52 42
'GPR112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S101.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GPR112 MUTATED 12 18 4
GPR112 WILD-TYPE 47 62 25
'GPR112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S102.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GPR112 MUTATED 2 20 12
GPR112 WILD-TYPE 18 71 45
'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S103.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GPR112 MUTATED 11 9 2
GPR112 WILD-TYPE 35 26 22
'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S104.  Gene #9: 'GPR112 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GPR112 MUTATED 0 12 10
GPR112 WILD-TYPE 11 34 38
'SMARCA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S105.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
SMARCA4 MUTATED 0 1 0 2
SMARCA4 WILD-TYPE 5 8 12 4
'SMARCA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S106.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
SMARCA4 MUTATED 2 1 0
SMARCA4 WILD-TYPE 5 12 12
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S107.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SMARCA4 MUTATED 6 4 4
SMARCA4 WILD-TYPE 61 68 29
'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S108.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SMARCA4 MUTATED 6 2 3
SMARCA4 WILD-TYPE 28 31 40
'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S109.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SMARCA4 MUTATED 6 2 4
SMARCA4 WILD-TYPE 67 21 35
'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S110.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SMARCA4 MUTATED 5 3 4
SMARCA4 WILD-TYPE 72 23 28
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Chi-square test), Q value = 1

Table S111.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SMARCA4 MUTATED 2 1 6 5 0
SMARCA4 WILD-TYPE 56 36 23 29 13

Figure S16.  Get High-res Image Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.000783 (Fisher's exact test), Q value = 1

Table S112.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SMARCA4 MUTATED 2 1 11
SMARCA4 WILD-TYPE 50 62 45

Figure S17.  Get High-res Image Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S113.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SMARCA4 MUTATED 1 10 3
SMARCA4 WILD-TYPE 58 70 26

Figure S18.  Get High-res Image Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SMARCA4 MUTATED 1 12 1
SMARCA4 WILD-TYPE 19 79 56

Figure S19.  Get High-res Image Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 1

Table S115.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SMARCA4 MUTATED 1 5 4
SMARCA4 WILD-TYPE 45 30 20
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S116.  Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SMARCA4 MUTATED 1 8 1
SMARCA4 WILD-TYPE 10 38 47

Figure S20.  Get High-res Image Gene #10: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S117.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
FLG MUTATED 0 5 2 3
FLG WILD-TYPE 5 4 10 3
'FLG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S118.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
FLG MUTATED 3 3 4
FLG WILD-TYPE 4 10 8
'FLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S119.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FLG MUTATED 18 14 10
FLG WILD-TYPE 49 58 23
'FLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S120.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FLG MUTATED 5 11 12
FLG WILD-TYPE 29 22 31
'FLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S121.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FLG MUTATED 17 5 14
FLG WILD-TYPE 56 18 25
'FLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FLG MUTATED 20 5 11
FLG WILD-TYPE 57 21 21
'FLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Chi-square test), Q value = 1

Table S123.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FLG MUTATED 16 5 5 13 3
FLG WILD-TYPE 42 32 24 21 10
'FLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FLG MUTATED 13 12 17
FLG WILD-TYPE 39 51 39
'FLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FLG MUTATED 10 22 9
FLG WILD-TYPE 49 58 20
'FLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FLG MUTATED 4 27 10
FLG WILD-TYPE 16 64 47
'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FLG MUTATED 11 9 4
FLG WILD-TYPE 35 26 20
'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S128.  Gene #11: 'FLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FLG MUTATED 1 12 11
FLG WILD-TYPE 10 34 37
'HRNR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S129.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
HRNR MUTATED 0 3 0 0
HRNR WILD-TYPE 5 6 12 6
'HRNR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 1

Table S130.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
HRNR MUTATED 0 0 3
HRNR WILD-TYPE 7 13 9
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S131.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
HRNR MUTATED 8 10 6
HRNR WILD-TYPE 59 62 27
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S132.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
HRNR MUTATED 4 6 5
HRNR WILD-TYPE 30 27 38
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S133.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
HRNR MUTATED 11 3 6
HRNR WILD-TYPE 62 20 33
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S134.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
HRNR MUTATED 11 4 5
HRNR WILD-TYPE 66 22 27
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Chi-square test), Q value = 1

Table S135.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
HRNR MUTATED 11 2 6 5 0
HRNR WILD-TYPE 47 35 23 29 13
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 1

Table S136.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
HRNR MUTATED 11 4 9
HRNR WILD-TYPE 41 59 47
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S137.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
HRNR MUTATED 7 12 4
HRNR WILD-TYPE 52 68 25
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
HRNR MUTATED 1 16 6
HRNR WILD-TYPE 19 75 51
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
HRNR MUTATED 7 4 3
HRNR WILD-TYPE 39 31 21
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S140.  Gene #12: 'HRNR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
HRNR MUTATED 1 6 7
HRNR WILD-TYPE 10 40 41
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S141.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MUC7 MUTATED 4 3 7
MUC7 WILD-TYPE 63 69 26

Figure S21.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S142.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MUC7 MUTATED 6 2 3
MUC7 WILD-TYPE 28 31 40
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S143.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MUC7 MUTATED 6 1 4
MUC7 WILD-TYPE 67 22 35
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S144.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MUC7 MUTATED 6 1 4
MUC7 WILD-TYPE 71 25 28
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00321 (Chi-square test), Q value = 1

Table S145.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MUC7 MUTATED 2 0 3 8 1
MUC7 WILD-TYPE 56 37 26 26 12

Figure S22.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7.96e-05 (Fisher's exact test), Q value = 0.15

Table S146.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MUC7 MUTATED 1 1 12
MUC7 WILD-TYPE 51 62 44

Figure S23.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S147.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MUC7 MUTATED 1 9 4
MUC7 WILD-TYPE 58 71 25

Figure S24.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MUC7 MUTATED 0 12 2
MUC7 WILD-TYPE 20 79 55

Figure S25.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S149.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MUC7 MUTATED 3 6 2
MUC7 WILD-TYPE 43 29 22
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00538 (Fisher's exact test), Q value = 1

Table S150.  Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MUC7 MUTATED 0 10 1
MUC7 WILD-TYPE 11 36 47

Figure S26.  Get High-res Image Gene #13: 'MUC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S151.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
BRAF MUTATED 0 3 1 0
BRAF WILD-TYPE 5 6 11 6
'BRAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S152.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
BRAF MUTATED 0 1 3
BRAF WILD-TYPE 7 12 9
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S153.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
BRAF MUTATED 5 6 4
BRAF WILD-TYPE 62 66 29
'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S154.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
BRAF MUTATED 2 4 5
BRAF WILD-TYPE 32 29 38
'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S155.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
BRAF MUTATED 5 1 3
BRAF WILD-TYPE 68 22 36
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S156.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
BRAF MUTATED 6 1 2
BRAF WILD-TYPE 71 25 30
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Chi-square test), Q value = 1

Table S157.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
BRAF MUTATED 7 4 1 2 1
BRAF WILD-TYPE 51 33 28 32 12
'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S158.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
BRAF MUTATED 7 5 3
BRAF WILD-TYPE 45 58 53
'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S159.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
BRAF MUTATED 6 5 4
BRAF WILD-TYPE 53 75 25
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S160.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
BRAF MUTATED 2 7 6
BRAF WILD-TYPE 18 84 51
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
BRAF MUTATED 5 2 2
BRAF WILD-TYPE 41 33 22
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'BRAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
BRAF MUTATED 1 2 6
BRAF WILD-TYPE 10 44 42
'COL11A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S163.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
COL11A1 MUTATED 1 1 3 4
COL11A1 WILD-TYPE 4 8 9 2
'COL11A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 1

Table S164.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
COL11A1 MUTATED 5 4 0
COL11A1 WILD-TYPE 2 9 12

Figure S27.  Get High-res Image Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S165.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL11A1 MUTATED 13 13 8
COL11A1 WILD-TYPE 54 59 25
'COL11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S166.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL11A1 MUTATED 5 9 5
COL11A1 WILD-TYPE 29 24 38
'COL11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S167.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL11A1 MUTATED 15 2 9
COL11A1 WILD-TYPE 58 21 30
'COL11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S168.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL11A1 MUTATED 15 5 6
COL11A1 WILD-TYPE 62 21 26
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Chi-square test), Q value = 1

Table S169.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL11A1 MUTATED 15 5 4 9 1
COL11A1 WILD-TYPE 43 32 25 25 12
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S170.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL11A1 MUTATED 11 8 15
COL11A1 WILD-TYPE 41 55 41
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 1

Table S171.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL11A1 MUTATED 6 22 4
COL11A1 WILD-TYPE 53 58 25

Figure S28.  Get High-res Image Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 1

Table S172.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL11A1 MUTATED 1 24 7
COL11A1 WILD-TYPE 19 67 50

Figure S29.  Get High-res Image Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S173.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL11A1 MUTATED 6 9 3
COL11A1 WILD-TYPE 40 26 21
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL11A1 MUTATED 1 12 5
COL11A1 WILD-TYPE 10 34 43
'U2AF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S175.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
U2AF1 MUTATED 2 3 1
U2AF1 WILD-TYPE 65 69 32
'U2AF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S176.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
U2AF1 MUTATED 0 0 3
U2AF1 WILD-TYPE 34 33 40
'U2AF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S177.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
U2AF1 MUTATED 3 2 0
U2AF1 WILD-TYPE 70 21 39
'U2AF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S178.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
U2AF1 MUTATED 4 1 0
U2AF1 WILD-TYPE 73 25 32
'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.653 (Chi-square test), Q value = 1

Table S179.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
U2AF1 MUTATED 3 1 1 0 1
U2AF1 WILD-TYPE 55 36 28 34 12
'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S180.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
U2AF1 MUTATED 3 2 1
U2AF1 WILD-TYPE 49 61 55
'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S181.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
U2AF1 MUTATED 4 2 0
U2AF1 WILD-TYPE 55 78 29
'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S182.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
U2AF1 MUTATED 0 1 5
U2AF1 WILD-TYPE 20 90 52

Figure S30.  Get High-res Image Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S183.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
U2AF1 MUTATED 2 1 0
U2AF1 WILD-TYPE 44 34 24
'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S184.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
U2AF1 MUTATED 0 1 2
U2AF1 WILD-TYPE 11 45 46
'PCK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S185.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
PCK1 MUTATED 0 1 1 2
PCK1 WILD-TYPE 5 8 11 4
'PCK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S186.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
PCK1 MUTATED 2 1 1
PCK1 WILD-TYPE 5 12 11
'PCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S187.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
PCK1 MUTATED 3 3 4
PCK1 WILD-TYPE 64 69 29
'PCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 1

Table S188.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
PCK1 MUTATED 0 5 1
PCK1 WILD-TYPE 34 28 42

Figure S31.  Get High-res Image Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S189.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
PCK1 MUTATED 4 0 2
PCK1 WILD-TYPE 69 23 37
'PCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S190.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
PCK1 MUTATED 3 1 2
PCK1 WILD-TYPE 74 25 30
'PCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.972 (Chi-square test), Q value = 1

Table S191.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
PCK1 MUTATED 4 2 1 2 1
PCK1 WILD-TYPE 54 35 28 32 12
'PCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S192.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
PCK1 MUTATED 2 5 3
PCK1 WILD-TYPE 50 58 53
'PCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
PCK1 MUTATED 3 7 0
PCK1 WILD-TYPE 56 73 29
'PCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
PCK1 MUTATED 1 6 3
PCK1 WILD-TYPE 19 85 54
'PCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S195.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
PCK1 MUTATED 2 4 0
PCK1 WILD-TYPE 44 31 24
'PCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S196.  Gene #17: 'PCK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
PCK1 MUTATED 0 3 3
PCK1 WILD-TYPE 11 43 45
'RIMS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S197.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
RIMS2 MUTATED 0 2 1 3
RIMS2 WILD-TYPE 5 7 11 3
'RIMS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S198.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
RIMS2 MUTATED 3 2 1
RIMS2 WILD-TYPE 4 11 11
'RIMS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S199.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RIMS2 MUTATED 9 13 10
RIMS2 WILD-TYPE 58 59 23
'RIMS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S200.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RIMS2 MUTATED 4 10 7
RIMS2 WILD-TYPE 30 23 36
'RIMS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S201.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RIMS2 MUTATED 11 6 6
RIMS2 WILD-TYPE 62 17 33
'RIMS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S202.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RIMS2 MUTATED 12 6 5
RIMS2 WILD-TYPE 65 20 27
'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Chi-square test), Q value = 1

Table S203.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RIMS2 MUTATED 16 3 3 8 2
RIMS2 WILD-TYPE 42 34 26 26 11
'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S204.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RIMS2 MUTATED 12 7 13
RIMS2 WILD-TYPE 40 56 43
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S205.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RIMS2 MUTATED 6 18 7
RIMS2 WILD-TYPE 53 62 22
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RIMS2 MUTATED 2 22 7
RIMS2 WILD-TYPE 18 69 50
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 1

Table S207.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RIMS2 MUTATED 4 11 5
RIMS2 WILD-TYPE 42 24 19

Figure S32.  Get High-res Image Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 1

Table S208.  Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RIMS2 MUTATED 1 14 5
RIMS2 WILD-TYPE 10 32 43

Figure S33.  Get High-res Image Gene #18: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S209.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
CSMD3 MUTATED 2 6 2 5
CSMD3 WILD-TYPE 3 3 10 1

Figure S34.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 1

Table S210.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
CSMD3 MUTATED 6 3 6
CSMD3 WILD-TYPE 1 10 6

Figure S35.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S211.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CSMD3 MUTATED 37 23 18
CSMD3 WILD-TYPE 30 49 15

Figure S36.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S212.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CSMD3 MUTATED 13 20 22
CSMD3 WILD-TYPE 21 13 21
'CSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S213.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CSMD3 MUTATED 35 7 20
CSMD3 WILD-TYPE 38 16 19
'CSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S214.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CSMD3 MUTATED 38 7 17
CSMD3 WILD-TYPE 39 19 15
'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00159 (Chi-square test), Q value = 1

Table S215.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CSMD3 MUTATED 32 6 13 20 6
CSMD3 WILD-TYPE 26 31 16 14 7

Figure S37.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00116 (Fisher's exact test), Q value = 1

Table S216.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CSMD3 MUTATED 28 17 32
CSMD3 WILD-TYPE 24 46 24

Figure S38.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00869 (Fisher's exact test), Q value = 1

Table S217.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CSMD3 MUTATED 17 42 16
CSMD3 WILD-TYPE 42 38 13

Figure S39.  Get High-res Image Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CSMD3 MUTATED 6 48 21
CSMD3 WILD-TYPE 14 43 36
'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S219.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CSMD3 MUTATED 20 21 10
CSMD3 WILD-TYPE 26 14 14
'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S220.  Gene #19: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CSMD3 MUTATED 3 27 21
CSMD3 WILD-TYPE 8 19 27
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S221.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RB1 MUTATED 2 1 4
RB1 WILD-TYPE 65 71 29

Figure S40.  Get High-res Image Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S222.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RB1 MUTATED 3 1 2
RB1 WILD-TYPE 31 32 41
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S223.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RB1 MUTATED 5 0 1
RB1 WILD-TYPE 68 23 38
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S224.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RB1 MUTATED 5 0 1
RB1 WILD-TYPE 72 26 31
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Chi-square test), Q value = 1

Table S225.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RB1 MUTATED 2 0 1 3 1
RB1 WILD-TYPE 56 37 28 31 12
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S226.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RB1 MUTATED 1 1 5
RB1 WILD-TYPE 51 62 51
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S227.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RB1 MUTATED 0 5 2
RB1 WILD-TYPE 59 75 27
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S228.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RB1 MUTATED 1 6 0
RB1 WILD-TYPE 19 85 57
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S229.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RB1 MUTATED 2 2 2
RB1 WILD-TYPE 44 33 22
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S230.  Gene #20: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RB1 MUTATED 0 4 2
RB1 WILD-TYPE 11 42 46
'FTSJD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S231.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FTSJD1 MUTATED 1 4 1
FTSJD1 WILD-TYPE 66 68 32
'FTSJD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 1

Table S232.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FTSJD1 MUTATED 0 3 0
FTSJD1 WILD-TYPE 34 30 43

Figure S41.  Get High-res Image Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FTSJD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 1

Table S233.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FTSJD1 MUTATED 1 2 3
FTSJD1 WILD-TYPE 72 21 36
'FTSJD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S234.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FTSJD1 MUTATED 2 2 2
FTSJD1 WILD-TYPE 75 24 30
'FTSJD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.893 (Chi-square test), Q value = 1

Table S235.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FTSJD1 MUTATED 2 1 1 2 0
FTSJD1 WILD-TYPE 56 36 28 32 13
'FTSJD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S236.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FTSJD1 MUTATED 4 1 1
FTSJD1 WILD-TYPE 48 62 55
'FTSJD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S237.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FTSJD1 MUTATED 2 3 1
FTSJD1 WILD-TYPE 57 77 28
'FTSJD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S238.  Gene #21: 'FTSJD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FTSJD1 MUTATED 1 3 2
FTSJD1 WILD-TYPE 19 88 55
'RIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S239.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RIT1 MUTATED 3 4 1
RIT1 WILD-TYPE 64 68 32
'RIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S240.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RIT1 MUTATED 1 3 1
RIT1 WILD-TYPE 33 30 42
'RIT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S241.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RIT1 MUTATED 3 1 3
RIT1 WILD-TYPE 70 22 36
'RIT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S242.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RIT1 MUTATED 2 3 2
RIT1 WILD-TYPE 75 23 30
'RIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.875 (Chi-square test), Q value = 1

Table S243.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RIT1 MUTATED 2 1 2 2 1
RIT1 WILD-TYPE 56 36 27 32 12
'RIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S244.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RIT1 MUTATED 2 3 3
RIT1 WILD-TYPE 50 60 53
'RIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S245.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RIT1 MUTATED 2 4 1
RIT1 WILD-TYPE 57 76 28
'RIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S246.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RIT1 MUTATED 1 4 2
RIT1 WILD-TYPE 19 87 55
'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S247.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RIT1 MUTATED 4 1 0
RIT1 WILD-TYPE 42 34 24
'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S248.  Gene #22: 'RIT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RIT1 MUTATED 0 1 4
RIT1 WILD-TYPE 11 45 44
'LRP1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S249.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
LRP1B MUTATED 1 5 4 4
LRP1B WILD-TYPE 4 4 8 2
'LRP1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S250.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
LRP1B MUTATED 4 4 6
LRP1B WILD-TYPE 3 9 6
'LRP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S251.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LRP1B MUTATED 21 25 14
LRP1B WILD-TYPE 46 47 19
'LRP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 1

Table S252.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
LRP1B MUTATED 7 17 10
LRP1B WILD-TYPE 27 16 33

Figure S42.  Get High-res Image Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRP1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S253.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
LRP1B MUTATED 24 7 16
LRP1B WILD-TYPE 49 16 23
'LRP1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S254.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
LRP1B MUTATED 30 7 10
LRP1B WILD-TYPE 47 19 22
'LRP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Chi-square test), Q value = 1

Table S255.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LRP1B MUTATED 26 8 8 13 5
LRP1B WILD-TYPE 32 29 21 21 8
'LRP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S256.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LRP1B MUTATED 24 15 21
LRP1B WILD-TYPE 28 48 35

Figure S43.  Get High-res Image Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S257.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LRP1B MUTATED 17 31 10
LRP1B WILD-TYPE 42 49 19
'LRP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S258.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LRP1B MUTATED 6 35 17
LRP1B WILD-TYPE 14 56 40
'LRP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S259.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
LRP1B MUTATED 15 11 6
LRP1B WILD-TYPE 31 24 18
'LRP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S260.  Gene #23: 'LRP1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
LRP1B MUTATED 3 16 13
LRP1B WILD-TYPE 8 30 35
'OR10J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S261.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR10J3 MUTATED 2 5 2
OR10J3 WILD-TYPE 65 67 31
'OR10J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S262.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR10J3 MUTATED 2 2 2
OR10J3 WILD-TYPE 32 31 41
'OR10J3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S263.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR10J3 MUTATED 4 1 2
OR10J3 WILD-TYPE 69 22 37
'OR10J3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S264.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR10J3 MUTATED 3 2 2
OR10J3 WILD-TYPE 74 24 30
'OR10J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Chi-square test), Q value = 1

Table S265.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR10J3 MUTATED 1 4 2 2 0
OR10J3 WILD-TYPE 57 33 27 32 13
'OR10J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S266.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR10J3 MUTATED 1 5 3
OR10J3 WILD-TYPE 51 58 53
'OR10J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S267.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR10J3 MUTATED 1 5 2
OR10J3 WILD-TYPE 58 75 27
'OR10J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S268.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR10J3 MUTATED 1 6 1
OR10J3 WILD-TYPE 19 85 56
'OR10J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S269.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR10J3 MUTATED 4 1 0
OR10J3 WILD-TYPE 42 34 24
'OR10J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S270.  Gene #24: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR10J3 MUTATED 0 2 3
OR10J3 WILD-TYPE 11 44 45
'LTBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S271.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
LTBP1 MUTATED 2 1 2 1
LTBP1 WILD-TYPE 3 8 10 5
'LTBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S272.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
LTBP1 MUTATED 2 3 1
LTBP1 WILD-TYPE 5 10 11
'LTBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S273.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LTBP1 MUTATED 9 6 5
LTBP1 WILD-TYPE 58 66 28
'LTBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S274.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
LTBP1 MUTATED 2 7 4
LTBP1 WILD-TYPE 32 26 39
'LTBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S275.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
LTBP1 MUTATED 7 0 6
LTBP1 WILD-TYPE 66 23 33
'LTBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S276.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
LTBP1 MUTATED 10 1 2
LTBP1 WILD-TYPE 67 25 30
'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.501 (Chi-square test), Q value = 1

Table S277.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LTBP1 MUTATED 9 3 3 5 0
LTBP1 WILD-TYPE 49 34 26 29 13
'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S278.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LTBP1 MUTATED 10 4 6
LTBP1 WILD-TYPE 42 59 50
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S279.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LTBP1 MUTATED 4 13 3
LTBP1 WILD-TYPE 55 67 26
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S280.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LTBP1 MUTATED 1 15 4
LTBP1 WILD-TYPE 19 76 53
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S281.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
LTBP1 MUTATED 5 6 1
LTBP1 WILD-TYPE 41 29 23
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S282.  Gene #25: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
LTBP1 MUTATED 0 8 4
LTBP1 WILD-TYPE 11 38 44
'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S283.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SETD2 MUTATED 4 9 2
SETD2 WILD-TYPE 63 63 31
'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S284.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SETD2 MUTATED 1 6 7
SETD2 WILD-TYPE 33 27 36
'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S285.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SETD2 MUTATED 4 3 2
SETD2 WILD-TYPE 69 20 37
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S286.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SETD2 MUTATED 5 4 0
SETD2 WILD-TYPE 72 22 32
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Chi-square test), Q value = 1

Table S287.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SETD2 MUTATED 6 5 1 2 1
SETD2 WILD-TYPE 52 32 28 32 12
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S288.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SETD2 MUTATED 5 8 2
SETD2 WILD-TYPE 47 55 54
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S289.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SETD2 MUTATED 8 5 1
SETD2 WILD-TYPE 51 75 28
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S290.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SETD2 MUTATED 2 4 8
SETD2 WILD-TYPE 18 87 49
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S291.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SETD2 MUTATED 8 2 3
SETD2 WILD-TYPE 38 33 21
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S292.  Gene #26: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SETD2 MUTATED 2 3 8
SETD2 WILD-TYPE 9 43 40
'ZCCHC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S293.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ZCCHC5 MUTATED 3 5 2
ZCCHC5 WILD-TYPE 64 67 31
'ZCCHC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S294.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ZCCHC5 MUTATED 2 4 0
ZCCHC5 WILD-TYPE 32 29 43

Figure S44.  Get High-res Image Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZCCHC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S295.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ZCCHC5 MUTATED 6 2 1
ZCCHC5 WILD-TYPE 67 21 38
'ZCCHC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S296.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ZCCHC5 MUTATED 5 2 2
ZCCHC5 WILD-TYPE 72 24 30
'ZCCHC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Chi-square test), Q value = 1

Table S297.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ZCCHC5 MUTATED 3 3 0 3 1
ZCCHC5 WILD-TYPE 55 34 29 31 12
'ZCCHC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S298.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ZCCHC5 MUTATED 3 5 2
ZCCHC5 WILD-TYPE 49 58 54
'ZCCHC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S299.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ZCCHC5 MUTATED 2 7 1
ZCCHC5 WILD-TYPE 57 73 28
'ZCCHC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S300.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ZCCHC5 MUTATED 2 7 1
ZCCHC5 WILD-TYPE 18 84 56
'ZCCHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S301.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ZCCHC5 MUTATED 4 3 0
ZCCHC5 WILD-TYPE 42 32 24
'ZCCHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S302.  Gene #27: 'ZCCHC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ZCCHC5 MUTATED 0 3 4
ZCCHC5 WILD-TYPE 11 43 44
'ADAMTS5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ADAMTS5 MUTATED 0 1 1 1
ADAMTS5 WILD-TYPE 5 8 11 5
'ADAMTS5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S304.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ADAMTS5 MUTATED 1 1 1
ADAMTS5 WILD-TYPE 6 12 11
'ADAMTS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S305.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ADAMTS5 MUTATED 6 6 2
ADAMTS5 WILD-TYPE 61 66 31
'ADAMTS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S306.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ADAMTS5 MUTATED 2 2 2
ADAMTS5 WILD-TYPE 32 31 41
'ADAMTS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S307.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ADAMTS5 MUTATED 5 2 2
ADAMTS5 WILD-TYPE 68 21 37
'ADAMTS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S308.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ADAMTS5 MUTATED 4 3 2
ADAMTS5 WILD-TYPE 73 23 30
'ADAMTS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Chi-square test), Q value = 1

Table S309.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ADAMTS5 MUTATED 4 5 0 4 1
ADAMTS5 WILD-TYPE 54 32 29 30 12
'ADAMTS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S310.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ADAMTS5 MUTATED 3 7 4
ADAMTS5 WILD-TYPE 49 56 52
'ADAMTS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S311.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ADAMTS5 MUTATED 4 8 1
ADAMTS5 WILD-TYPE 55 72 28
'ADAMTS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S312.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ADAMTS5 MUTATED 2 9 2
ADAMTS5 WILD-TYPE 18 82 55
'ADAMTS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S313.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ADAMTS5 MUTATED 3 3 0
ADAMTS5 WILD-TYPE 43 32 24
'ADAMTS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S314.  Gene #28: 'ADAMTS5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ADAMTS5 MUTATED 0 3 3
ADAMTS5 WILD-TYPE 11 43 45
'GBA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S315.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GBA3 MUTATED 3 4 1
GBA3 WILD-TYPE 64 68 32
'GBA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S316.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GBA3 MUTATED 4 1 2
GBA3 WILD-TYPE 30 32 41
'GBA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S317.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GBA3 MUTATED 2 1 3
GBA3 WILD-TYPE 71 22 36
'GBA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S318.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GBA3 MUTATED 3 1 2
GBA3 WILD-TYPE 74 25 30
'GBA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Chi-square test), Q value = 1

Table S319.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GBA3 MUTATED 3 1 3 1 0
GBA3 WILD-TYPE 55 36 26 33 13
'GBA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S320.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GBA3 MUTATED 1 2 5
GBA3 WILD-TYPE 51 61 51
'GBA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S321.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GBA3 MUTATED 2 3 2
GBA3 WILD-TYPE 57 77 27
'GBA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S322.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GBA3 MUTATED 1 4 2
GBA3 WILD-TYPE 19 87 55
'GBA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S323.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GBA3 MUTATED 2 2 3
GBA3 WILD-TYPE 44 33 21
'GBA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S324.  Gene #29: 'GBA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GBA3 MUTATED 1 4 2
GBA3 WILD-TYPE 10 42 46
'MYL10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S325.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MYL10 MUTATED 2 2 1
MYL10 WILD-TYPE 65 70 32
'MYL10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S326.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MYL10 MUTATED 3 1 1
MYL10 WILD-TYPE 70 22 38
'MYL10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S327.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MYL10 MUTATED 3 1 1
MYL10 WILD-TYPE 74 25 31
'MYL10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Chi-square test), Q value = 1

Table S328.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MYL10 MUTATED 2 0 2 0 1
MYL10 WILD-TYPE 56 37 27 34 12
'MYL10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S329.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MYL10 MUTATED 3 1 1
MYL10 WILD-TYPE 49 62 55
'MYL10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S330.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MYL10 MUTATED 2 3 0
MYL10 WILD-TYPE 57 77 29
'MYL10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S331.  Gene #30: 'MYL10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MYL10 MUTATED 0 3 2
MYL10 WILD-TYPE 20 88 55
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S332.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SMAD4 MUTATED 3 3 1
SMAD4 WILD-TYPE 64 69 32
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S333.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SMAD4 MUTATED 2 2 1
SMAD4 WILD-TYPE 32 31 42
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S334.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SMAD4 MUTATED 3 0 2
SMAD4 WILD-TYPE 70 23 37
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S335.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SMAD4 MUTATED 3 2 0
SMAD4 WILD-TYPE 74 24 32
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.831 (Chi-square test), Q value = 1

Table S336.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SMAD4 MUTATED 2 2 2 1 0
SMAD4 WILD-TYPE 56 35 27 33 13
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S337.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SMAD4 MUTATED 3 4 0
SMAD4 WILD-TYPE 49 59 56
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S338.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SMAD4 MUTATED 2 5 0
SMAD4 WILD-TYPE 57 75 29
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S339.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SMAD4 MUTATED 1 5 1
SMAD4 WILD-TYPE 19 86 56
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S340.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SMAD4 MUTATED 3 1 1
SMAD4 WILD-TYPE 43 34 23
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S341.  Gene #31: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SMAD4 MUTATED 1 2 2
SMAD4 WILD-TYPE 10 44 46
'ZNF268 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S342.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ZNF268 MUTATED 1 2 0 1
ZNF268 WILD-TYPE 4 7 12 5
'ZNF268 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S343.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ZNF268 MUTATED 1 1 2
ZNF268 WILD-TYPE 6 12 10
'ZNF268 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 1

Table S344.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ZNF268 MUTATED 3 0 2
ZNF268 WILD-TYPE 64 72 31
'ZNF268 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S345.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ZNF268 MUTATED 5 0 0
ZNF268 WILD-TYPE 68 23 39
'ZNF268 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S346.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ZNF268 MUTATED 5 0 0
ZNF268 WILD-TYPE 72 26 32
'ZNF268 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Chi-square test), Q value = 1

Table S347.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ZNF268 MUTATED 3 0 0 2 0
ZNF268 WILD-TYPE 55 37 29 32 13
'ZNF268 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S348.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ZNF268 MUTATED 2 1 2
ZNF268 WILD-TYPE 50 62 54
'ZNF268 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S349.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ZNF268 MUTATED 1 4 0
ZNF268 WILD-TYPE 58 76 29
'ZNF268 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S350.  Gene #32: 'ZNF268 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ZNF268 MUTATED 0 4 1
ZNF268 WILD-TYPE 20 87 56
'OR4Q3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S351.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR4Q3 MUTATED 3 4 4
OR4Q3 WILD-TYPE 64 68 29
'OR4Q3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S352.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR4Q3 MUTATED 4 2 1
OR4Q3 WILD-TYPE 30 31 42
'OR4Q3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 1

Table S353.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR4Q3 MUTATED 1 1 4
OR4Q3 WILD-TYPE 72 22 35
'OR4Q3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S354.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR4Q3 MUTATED 2 1 3
OR4Q3 WILD-TYPE 75 25 29
'OR4Q3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Chi-square test), Q value = 1

Table S355.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR4Q3 MUTATED 4 1 3 3 0
OR4Q3 WILD-TYPE 54 36 26 31 13
'OR4Q3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 1

Table S356.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR4Q3 MUTATED 3 1 7
OR4Q3 WILD-TYPE 49 62 49
'OR4Q3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S357.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR4Q3 MUTATED 0 9 2
OR4Q3 WILD-TYPE 59 71 27

Figure S45.  Get High-res Image Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR4Q3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 1

Table S358.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR4Q3 MUTATED 1 10 0
OR4Q3 WILD-TYPE 19 81 57

Figure S46.  Get High-res Image Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR4Q3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S359.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR4Q3 MUTATED 2 3 2
OR4Q3 WILD-TYPE 44 32 22
'OR4Q3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S360.  Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR4Q3 MUTATED 1 6 0
OR4Q3 WILD-TYPE 10 40 48

Figure S47.  Get High-res Image Gene #33: 'OR4Q3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 1

Table S361.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ARID1A MUTATED 6 1 4
ARID1A WILD-TYPE 61 71 29

Figure S48.  Get High-res Image Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S362.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ARID1A MUTATED 4 3 1
ARID1A WILD-TYPE 30 30 42
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 1

Table S363.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ARID1A MUTATED 3 0 5
ARID1A WILD-TYPE 70 23 34
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S364.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ARID1A MUTATED 4 0 4
ARID1A WILD-TYPE 73 26 28
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Chi-square test), Q value = 1

Table S365.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ARID1A MUTATED 3 2 1 4 1
ARID1A WILD-TYPE 55 35 28 30 12
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S366.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ARID1A MUTATED 2 3 6
ARID1A WILD-TYPE 50 60 50
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00639 (Fisher's exact test), Q value = 1

Table S367.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ARID1A MUTATED 0 10 1
ARID1A WILD-TYPE 59 70 28

Figure S49.  Get High-res Image Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S368.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ARID1A MUTATED 0 9 2
ARID1A WILD-TYPE 20 82 55
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S369.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ARID1A MUTATED 2 5 1
ARID1A WILD-TYPE 44 30 23
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S370.  Gene #34: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ARID1A MUTATED 0 6 2
ARID1A WILD-TYPE 11 40 46
'CCDC73 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S371.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CCDC73 MUTATED 5 2 4
CCDC73 WILD-TYPE 62 70 29
'CCDC73 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S372.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CCDC73 MUTATED 5 1 3
CCDC73 WILD-TYPE 29 32 40
'CCDC73 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S373.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CCDC73 MUTATED 6 1 2
CCDC73 WILD-TYPE 67 22 37
'CCDC73 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S374.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CCDC73 MUTATED 6 1 2
CCDC73 WILD-TYPE 71 25 30
'CCDC73 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Chi-square test), Q value = 1

Table S375.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CCDC73 MUTATED 5 1 1 2 2
CCDC73 WILD-TYPE 53 36 28 32 11
'CCDC73 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S376.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CCDC73 MUTATED 4 4 3
CCDC73 WILD-TYPE 48 59 53
'CCDC73 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S377.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CCDC73 MUTATED 2 6 3
CCDC73 WILD-TYPE 57 74 26
'CCDC73 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S378.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CCDC73 MUTATED 0 8 3
CCDC73 WILD-TYPE 20 83 54
'CCDC73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S379.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CCDC73 MUTATED 4 4 1
CCDC73 WILD-TYPE 42 31 23
'CCDC73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S380.  Gene #35: 'CCDC73 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CCDC73 MUTATED 0 5 4
CCDC73 WILD-TYPE 11 41 44
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S381.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MGA MUTATED 6 6 4
MGA WILD-TYPE 61 66 29
'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 1

Table S382.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MGA MUTATED 5 5 1
MGA WILD-TYPE 29 28 42
'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S383.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MGA MUTATED 7 0 5
MGA WILD-TYPE 66 23 34
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S384.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MGA MUTATED 7 2 3
MGA WILD-TYPE 70 24 29
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Chi-square test), Q value = 1

Table S385.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MGA MUTATED 8 2 2 4 0
MGA WILD-TYPE 50 35 27 30 13
'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S386.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MGA MUTATED 7 3 6
MGA WILD-TYPE 45 60 50
'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S387.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MGA MUTATED 3 10 2
MGA WILD-TYPE 56 70 27
'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S388.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MGA MUTATED 2 11 2
MGA WILD-TYPE 18 80 55
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S389.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MGA MUTATED 4 6 1
MGA WILD-TYPE 42 29 23
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S390.  Gene #36: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MGA MUTATED 0 7 4
MGA WILD-TYPE 11 39 44
'FAM48B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S391.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
FAM48B1 MUTATED 1 0 2 1
FAM48B1 WILD-TYPE 4 9 10 5
'FAM48B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S392.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
FAM48B1 MUTATED 1 2 1
FAM48B1 WILD-TYPE 6 11 11
'FAM48B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S393.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FAM48B1 MUTATED 4 3 3
FAM48B1 WILD-TYPE 63 69 30
'FAM48B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S394.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FAM48B1 MUTATED 2 1 0
FAM48B1 WILD-TYPE 32 32 43
'FAM48B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S395.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FAM48B1 MUTATED 2 1 4
FAM48B1 WILD-TYPE 71 22 35
'FAM48B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S396.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FAM48B1 MUTATED 5 1 1
FAM48B1 WILD-TYPE 72 25 31
'FAM48B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Chi-square test), Q value = 1

Table S397.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FAM48B1 MUTATED 4 3 1 2 0
FAM48B1 WILD-TYPE 54 34 28 32 13
'FAM48B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S398.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FAM48B1 MUTATED 4 3 3
FAM48B1 WILD-TYPE 48 60 53
'FAM48B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S399.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FAM48B1 MUTATED 3 6 0
FAM48B1 WILD-TYPE 56 74 29
'FAM48B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S400.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FAM48B1 MUTATED 0 6 3
FAM48B1 WILD-TYPE 20 85 54
'FAM48B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S401.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FAM48B1 MUTATED 2 1 1
FAM48B1 WILD-TYPE 44 34 23
'FAM48B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S402.  Gene #37: 'FAM48B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FAM48B1 MUTATED 0 3 1
FAM48B1 WILD-TYPE 11 43 47
'IFNA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S403.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
IFNA7 MUTATED 1 1 3
IFNA7 WILD-TYPE 66 71 30
'IFNA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S404.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
IFNA7 MUTATED 1 1 1
IFNA7 WILD-TYPE 33 32 42
'IFNA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S405.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
IFNA7 MUTATED 2 0 1
IFNA7 WILD-TYPE 71 23 38
'IFNA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S406.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
IFNA7 MUTATED 1 1 1
IFNA7 WILD-TYPE 76 25 31
'IFNA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Chi-square test), Q value = 1

Table S407.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
IFNA7 MUTATED 0 1 0 4 0
IFNA7 WILD-TYPE 58 36 29 30 13

Figure S50.  Get High-res Image Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IFNA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S408.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
IFNA7 MUTATED 0 2 3
IFNA7 WILD-TYPE 52 61 53
'IFNA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S409.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
IFNA7 MUTATED 0 4 1
IFNA7 WILD-TYPE 59 76 28
'IFNA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S410.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
IFNA7 MUTATED 1 4 0
IFNA7 WILD-TYPE 19 87 57
'IFNA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S411.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
IFNA7 MUTATED 2 0 1
IFNA7 WILD-TYPE 44 35 23
'IFNA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S412.  Gene #38: 'IFNA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
IFNA7 MUTATED 1 1 1
IFNA7 WILD-TYPE 10 45 47
'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S413.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
MLL3 MUTATED 1 2 2 3
MLL3 WILD-TYPE 4 7 10 3
'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S414.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
MLL3 MUTATED 3 3 2
MLL3 WILD-TYPE 4 10 10
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S415.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MLL3 MUTATED 13 15 6
MLL3 WILD-TYPE 54 57 27
'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S416.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MLL3 MUTATED 7 6 9
MLL3 WILD-TYPE 27 27 34
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S417.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MLL3 MUTATED 12 5 10
MLL3 WILD-TYPE 61 18 29
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S418.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MLL3 MUTATED 14 5 8
MLL3 WILD-TYPE 63 21 24
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Chi-square test), Q value = 1

Table S419.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MLL3 MUTATED 14 8 4 6 2
MLL3 WILD-TYPE 44 29 25 28 11
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S420.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MLL3 MUTATED 10 12 12
MLL3 WILD-TYPE 42 51 44
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S421.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MLL3 MUTATED 10 19 5
MLL3 WILD-TYPE 49 61 24
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S422.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MLL3 MUTATED 3 21 10
MLL3 WILD-TYPE 17 70 47
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S423.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MLL3 MUTATED 11 7 3
MLL3 WILD-TYPE 35 28 21
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S424.  Gene #39: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MLL3 MUTATED 0 10 11
MLL3 WILD-TYPE 11 36 37
'ASTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S425.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ASTN2 MUTATED 7 4 3
ASTN2 WILD-TYPE 60 68 30
'ASTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S426.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ASTN2 MUTATED 4 3 3
ASTN2 WILD-TYPE 30 30 40
'ASTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S427.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ASTN2 MUTATED 6 2 4
ASTN2 WILD-TYPE 67 21 35
'ASTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S428.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ASTN2 MUTATED 8 2 2
ASTN2 WILD-TYPE 69 24 30
'ASTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Chi-square test), Q value = 1

Table S429.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ASTN2 MUTATED 3 2 4 4 1
ASTN2 WILD-TYPE 55 35 25 30 12
'ASTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S430.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ASTN2 MUTATED 2 6 6
ASTN2 WILD-TYPE 50 57 50
'ASTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S431.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ASTN2 MUTATED 2 7 4
ASTN2 WILD-TYPE 57 73 25
'ASTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S432.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ASTN2 MUTATED 1 8 4
ASTN2 WILD-TYPE 19 83 53
'ASTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S433.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ASTN2 MUTATED 4 4 2
ASTN2 WILD-TYPE 42 31 22
'ASTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S434.  Gene #40: 'ASTN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ASTN2 MUTATED 0 6 4
ASTN2 WILD-TYPE 11 40 44
'MBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S435.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MBD1 MUTATED 2 1 3
MBD1 WILD-TYPE 65 71 30
'MBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S436.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MBD1 MUTATED 3 0 2
MBD1 WILD-TYPE 70 23 37
'MBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S437.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MBD1 MUTATED 3 0 2
MBD1 WILD-TYPE 74 26 30
'MBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.028 (Chi-square test), Q value = 1

Table S438.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MBD1 MUTATED 0 2 0 4 0
MBD1 WILD-TYPE 58 35 29 30 13

Figure S51.  Get High-res Image Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S439.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MBD1 MUTATED 1 2 3
MBD1 WILD-TYPE 51 61 53
'MBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S440.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MBD1 MUTATED 3 3 0
MBD1 WILD-TYPE 56 77 29
'MBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S441.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MBD1 MUTATED 0 4 2
MBD1 WILD-TYPE 20 87 55
'MBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S442.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MBD1 MUTATED 2 1 0
MBD1 WILD-TYPE 44 34 24
'MBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S443.  Gene #41: 'MBD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MBD1 MUTATED 0 1 2
MBD1 WILD-TYPE 11 45 46
'FLI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S444.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
FLI1 MUTATED 0 2 1 0
FLI1 WILD-TYPE 5 7 11 6
'FLI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S445.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
FLI1 MUTATED 0 1 2
FLI1 WILD-TYPE 7 12 10
'FLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S446.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FLI1 MUTATED 2 2 2
FLI1 WILD-TYPE 65 70 31
'FLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S447.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FLI1 MUTATED 1 1 1
FLI1 WILD-TYPE 33 32 42
'FLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S448.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FLI1 MUTATED 3 1 1
FLI1 WILD-TYPE 70 22 38
'FLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S449.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FLI1 MUTATED 3 0 2
FLI1 WILD-TYPE 74 26 30
'FLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Chi-square test), Q value = 1

Table S450.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FLI1 MUTATED 2 2 0 2 0
FLI1 WILD-TYPE 56 35 29 32 13
'FLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S451.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FLI1 MUTATED 2 2 2
FLI1 WILD-TYPE 50 61 54
'FLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S452.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FLI1 MUTATED 3 3 0
FLI1 WILD-TYPE 56 77 29
'FLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S453.  Gene #42: 'FLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FLI1 MUTATED 1 3 2
FLI1 WILD-TYPE 19 88 55
'LAX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S454.  Gene #43: 'LAX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LAX1 MUTATED 3 3 0
LAX1 WILD-TYPE 64 69 33
'LAX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0722 (Chi-square test), Q value = 1

Table S455.  Gene #43: 'LAX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LAX1 MUTATED 2 4 0 0 0
LAX1 WILD-TYPE 56 33 29 34 13
'LAX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S456.  Gene #43: 'LAX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LAX1 MUTATED 1 4 1
LAX1 WILD-TYPE 51 59 55
'LAX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S457.  Gene #43: 'LAX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LAX1 MUTATED 3 3 0
LAX1 WILD-TYPE 56 77 29
'LAX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S458.  Gene #43: 'LAX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LAX1 MUTATED 1 3 2
LAX1 WILD-TYPE 19 88 55
'SVOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S459.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SVOP MUTATED 4 2 1
SVOP WILD-TYPE 63 70 32
'SVOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S460.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SVOP MUTATED 1 3 1
SVOP WILD-TYPE 33 30 42
'SVOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S461.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SVOP MUTATED 3 0 4
SVOP WILD-TYPE 70 23 35
'SVOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S462.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SVOP MUTATED 5 0 2
SVOP WILD-TYPE 72 26 30
'SVOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Chi-square test), Q value = 1

Table S463.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SVOP MUTATED 3 0 1 2 1
SVOP WILD-TYPE 55 37 28 32 12
'SVOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S464.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SVOP MUTATED 3 2 2
SVOP WILD-TYPE 49 61 54
'SVOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S465.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SVOP MUTATED 3 4 0
SVOP WILD-TYPE 56 76 29
'SVOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S466.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SVOP MUTATED 0 4 3
SVOP WILD-TYPE 20 87 54
'SVOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S467.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SVOP MUTATED 4 1 0
SVOP WILD-TYPE 42 34 24
'SVOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S468.  Gene #44: 'SVOP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SVOP MUTATED 0 2 3
SVOP WILD-TYPE 11 44 45
'MTTP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S469.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MTTP MUTATED 1 5 0
MTTP WILD-TYPE 66 67 33
'MTTP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S470.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MTTP MUTATED 0 2 2
MTTP WILD-TYPE 34 31 41
'MTTP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S471.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MTTP MUTATED 3 1 1
MTTP WILD-TYPE 70 22 38
'MTTP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S472.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MTTP MUTATED 4 1 0
MTTP WILD-TYPE 73 25 32
'MTTP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Chi-square test), Q value = 1

Table S473.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MTTP MUTATED 1 1 0 2 2
MTTP WILD-TYPE 57 36 29 32 11
'MTTP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 1

Table S474.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MTTP MUTATED 0 6 0
MTTP WILD-TYPE 52 57 56

Figure S52.  Get High-res Image Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S475.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MTTP MUTATED 4 2 0
MTTP WILD-TYPE 55 78 29
'MTTP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S476.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MTTP MUTATED 0 3 3
MTTP WILD-TYPE 20 88 54
'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S477.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MTTP MUTATED 3 1 0
MTTP WILD-TYPE 43 34 24
'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S478.  Gene #45: 'MTTP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MTTP MUTATED 0 1 3
MTTP WILD-TYPE 11 45 45
'COL19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S479.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL19A1 MUTATED 6 4 4
COL19A1 WILD-TYPE 61 68 29
'COL19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S480.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL19A1 MUTATED 5 4 3
COL19A1 WILD-TYPE 29 29 40
'COL19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S481.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL19A1 MUTATED 6 0 7
COL19A1 WILD-TYPE 67 23 32
'COL19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S482.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL19A1 MUTATED 9 1 3
COL19A1 WILD-TYPE 68 25 29
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Chi-square test), Q value = 1

Table S483.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL19A1 MUTATED 7 0 3 4 0
COL19A1 WILD-TYPE 51 37 26 30 13
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S484.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL19A1 MUTATED 5 2 7
COL19A1 WILD-TYPE 47 61 49
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S485.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL19A1 MUTATED 2 9 3
COL19A1 WILD-TYPE 57 71 26
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S486.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL19A1 MUTATED 1 11 2
COL19A1 WILD-TYPE 19 80 55
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 1

Table S487.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL19A1 MUTATED 2 7 3
COL19A1 WILD-TYPE 44 28 21
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S488.  Gene #46: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL19A1 MUTATED 0 9 3
COL19A1 WILD-TYPE 11 37 45
'OR10G9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S489.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR10G9 MUTATED 6 2 2
OR10G9 WILD-TYPE 61 70 31
'OR10G9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 1

Table S490.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR10G9 MUTATED 1 5 1
OR10G9 WILD-TYPE 33 28 42
'OR10G9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S491.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR10G9 MUTATED 5 1 1
OR10G9 WILD-TYPE 68 22 38
'OR10G9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S492.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR10G9 MUTATED 6 1 0
OR10G9 WILD-TYPE 71 25 32
'OR10G9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Chi-square test), Q value = 1

Table S493.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR10G9 MUTATED 6 1 0 2 1
OR10G9 WILD-TYPE 52 36 29 32 12
'OR10G9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S494.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR10G9 MUTATED 5 2 3
OR10G9 WILD-TYPE 47 61 53
'OR10G9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S495.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR10G9 MUTATED 2 7 1
OR10G9 WILD-TYPE 57 73 28
'OR10G9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S496.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR10G9 MUTATED 0 7 3
OR10G9 WILD-TYPE 20 84 54
'OR10G9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S497.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR10G9 MUTATED 4 3 0
OR10G9 WILD-TYPE 42 32 24
'OR10G9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S498.  Gene #47: 'OR10G9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR10G9 MUTATED 0 5 2
OR10G9 WILD-TYPE 11 41 46
'LRRC32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S499.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
LRRC32 MUTATED 0 0 3 1
LRRC32 WILD-TYPE 5 9 9 5
'LRRC32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S500.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
LRRC32 MUTATED 1 3 0
LRRC32 WILD-TYPE 6 10 12
'LRRC32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S501.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LRRC32 MUTATED 3 3 5
LRRC32 WILD-TYPE 64 69 28
'LRRC32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S502.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
LRRC32 MUTATED 4 2 1
LRRC32 WILD-TYPE 30 31 42
'LRRC32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S503.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
LRRC32 MUTATED 3 0 4
LRRC32 WILD-TYPE 70 23 35
'LRRC32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 1

Table S504.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
LRRC32 MUTATED 3 0 4
LRRC32 WILD-TYPE 74 26 28
'LRRC32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Chi-square test), Q value = 1

Table S505.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LRRC32 MUTATED 4 2 0 5 0
LRRC32 WILD-TYPE 54 35 29 29 13
'LRRC32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S506.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LRRC32 MUTATED 3 2 6
LRRC32 WILD-TYPE 49 61 50
'LRRC32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S507.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LRRC32 MUTATED 2 5 3
LRRC32 WILD-TYPE 57 75 26
'LRRC32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S508.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LRRC32 MUTATED 1 8 1
LRRC32 WILD-TYPE 19 83 56
'LRRC32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S509.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
LRRC32 MUTATED 2 2 2
LRRC32 WILD-TYPE 44 33 22
'LRRC32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 1

Table S510.  Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
LRRC32 MUTATED 1 5 0
LRRC32 WILD-TYPE 10 41 48

Figure S53.  Get High-res Image Gene #48: 'LRRC32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S511.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TEX15 MUTATED 11 11 2
TEX15 WILD-TYPE 56 61 31
'TEX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 1

Table S512.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TEX15 MUTATED 1 10 7
TEX15 WILD-TYPE 33 23 36

Figure S54.  Get High-res Image Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TEX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S513.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TEX15 MUTATED 11 3 7
TEX15 WILD-TYPE 62 20 32
'TEX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S514.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TEX15 MUTATED 14 5 2
TEX15 WILD-TYPE 63 21 30
'TEX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Chi-square test), Q value = 1

Table S515.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TEX15 MUTATED 12 1 4 5 2
TEX15 WILD-TYPE 46 36 25 29 11
'TEX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S516.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TEX15 MUTATED 12 6 6
TEX15 WILD-TYPE 40 57 50
'TEX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S517.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TEX15 MUTATED 5 14 5
TEX15 WILD-TYPE 54 66 24
'TEX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S518.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TEX15 MUTATED 2 16 6
TEX15 WILD-TYPE 18 75 51
'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S519.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TEX15 MUTATED 8 7 3
TEX15 WILD-TYPE 38 28 21
'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S520.  Gene #49: 'TEX15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TEX15 MUTATED 0 9 9
TEX15 WILD-TYPE 11 37 39
'CNGA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S521.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
CNGA2 MUTATED 0 1 0 2
CNGA2 WILD-TYPE 5 8 12 4
'CNGA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S522.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
CNGA2 MUTATED 2 0 1
CNGA2 WILD-TYPE 5 13 11
'CNGA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S523.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CNGA2 MUTATED 7 3 1
CNGA2 WILD-TYPE 60 69 32
'CNGA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S524.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CNGA2 MUTATED 1 4 1
CNGA2 WILD-TYPE 33 29 42
'CNGA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CNGA2 MUTATED 6 1 3
CNGA2 WILD-TYPE 67 22 36
'CNGA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S526.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CNGA2 MUTATED 6 2 2
CNGA2 WILD-TYPE 71 24 30
'CNGA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Chi-square test), Q value = 1

Table S527.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CNGA2 MUTATED 4 0 1 4 2
CNGA2 WILD-TYPE 54 37 28 30 11
'CNGA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S528.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CNGA2 MUTATED 3 4 4
CNGA2 WILD-TYPE 49 59 52
'CNGA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S529.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CNGA2 MUTATED 2 7 2
CNGA2 WILD-TYPE 57 73 27
'CNGA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S530.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CNGA2 MUTATED 1 9 1
CNGA2 WILD-TYPE 19 82 56
'CNGA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S531.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CNGA2 MUTATED 3 1 2
CNGA2 WILD-TYPE 43 34 22
'CNGA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S532.  Gene #50: 'CNGA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CNGA2 MUTATED 0 3 3
CNGA2 WILD-TYPE 11 43 45
'ANP32C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S533.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ANP32C MUTATED 4 1 3
ANP32C WILD-TYPE 63 71 30
'ANP32C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S534.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ANP32C MUTATED 2 4 0
ANP32C WILD-TYPE 32 29 43

Figure S55.  Get High-res Image Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANP32C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S535.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ANP32C MUTATED 4 1 2
ANP32C WILD-TYPE 69 22 37
'ANP32C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S536.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ANP32C MUTATED 5 2 0
ANP32C WILD-TYPE 72 24 32
'ANP32C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Chi-square test), Q value = 1

Table S537.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ANP32C MUTATED 3 0 1 4 0
ANP32C WILD-TYPE 55 37 28 30 13
'ANP32C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S538.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ANP32C MUTATED 2 2 4
ANP32C WILD-TYPE 50 61 52
'ANP32C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S539.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ANP32C MUTATED 1 5 2
ANP32C WILD-TYPE 58 75 27
'ANP32C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S540.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ANP32C MUTATED 0 6 2
ANP32C WILD-TYPE 20 85 55
'ANP32C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ANP32C MUTATED 2 2 1
ANP32C WILD-TYPE 44 33 23
'ANP32C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S542.  Gene #51: 'ANP32C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ANP32C MUTATED 0 2 3
ANP32C WILD-TYPE 11 44 45
'KIAA1755 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S543.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
KIAA1755 MUTATED 0 3 1 1
KIAA1755 WILD-TYPE 5 6 11 5
'KIAA1755 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S544.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
KIAA1755 MUTATED 1 1 3
KIAA1755 WILD-TYPE 6 12 9
'KIAA1755 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S545.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KIAA1755 MUTATED 3 7 2
KIAA1755 WILD-TYPE 64 65 31
'KIAA1755 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S546.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KIAA1755 MUTATED 1 4 3
KIAA1755 WILD-TYPE 33 29 40
'KIAA1755 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S547.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KIAA1755 MUTATED 3 3 5
KIAA1755 WILD-TYPE 70 20 34
'KIAA1755 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 1

Table S548.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KIAA1755 MUTATED 3 3 5
KIAA1755 WILD-TYPE 74 23 27
'KIAA1755 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Chi-square test), Q value = 1

Table S549.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KIAA1755 MUTATED 3 3 2 2 2
KIAA1755 WILD-TYPE 55 34 27 32 11
'KIAA1755 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S550.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KIAA1755 MUTATED 4 5 3
KIAA1755 WILD-TYPE 48 58 53
'KIAA1755 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S551.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KIAA1755 MUTATED 3 6 3
KIAA1755 WILD-TYPE 56 74 26
'KIAA1755 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KIAA1755 MUTATED 1 7 4
KIAA1755 WILD-TYPE 19 84 53
'KIAA1755 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S553.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KIAA1755 MUTATED 5 1 1
KIAA1755 WILD-TYPE 41 34 23
'KIAA1755 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S554.  Gene #52: 'KIAA1755 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KIAA1755 MUTATED 0 3 4
KIAA1755 WILD-TYPE 11 43 44
'OVCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S555.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
OVCH1 MUTATED 0 2 2 1
OVCH1 WILD-TYPE 5 7 10 5
'OVCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S556.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
OVCH1 MUTATED 1 2 2
OVCH1 WILD-TYPE 6 11 10
'OVCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S557.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OVCH1 MUTATED 2 9 3
OVCH1 WILD-TYPE 65 63 30
'OVCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S558.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OVCH1 MUTATED 3 4 4
OVCH1 WILD-TYPE 31 29 39
'OVCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S559.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OVCH1 MUTATED 4 1 5
OVCH1 WILD-TYPE 69 22 34
'OVCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S560.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OVCH1 MUTATED 5 2 3
OVCH1 WILD-TYPE 72 24 29
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Chi-square test), Q value = 1

Table S561.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OVCH1 MUTATED 6 2 2 3 1
OVCH1 WILD-TYPE 52 35 27 31 12
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S562.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OVCH1 MUTATED 6 4 4
OVCH1 WILD-TYPE 46 59 52
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S563.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OVCH1 MUTATED 4 8 2
OVCH1 WILD-TYPE 55 72 27
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S564.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OVCH1 MUTATED 0 10 4
OVCH1 WILD-TYPE 20 81 53
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S565.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OVCH1 MUTATED 3 2 2
OVCH1 WILD-TYPE 43 33 22
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S566.  Gene #53: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OVCH1 MUTATED 0 3 4
OVCH1 WILD-TYPE 11 43 44
'PJA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S567.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
PJA1 MUTATED 3 3 2
PJA1 WILD-TYPE 64 69 31
'PJA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S568.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
PJA1 MUTATED 1 1 2
PJA1 WILD-TYPE 33 32 41
'PJA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S569.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
PJA1 MUTATED 2 1 2
PJA1 WILD-TYPE 71 22 37
'PJA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S570.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
PJA1 MUTATED 2 0 3
PJA1 WILD-TYPE 75 26 29
'PJA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Chi-square test), Q value = 1

Table S571.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
PJA1 MUTATED 3 1 2 2 0
PJA1 WILD-TYPE 55 36 27 32 13
'PJA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 1

Table S572.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
PJA1 MUTATED 4 0 4
PJA1 WILD-TYPE 48 63 52

Figure S56.  Get High-res Image Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PJA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S573.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
PJA1 MUTATED 1 5 1
PJA1 WILD-TYPE 58 75 28
'PJA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S574.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
PJA1 MUTATED 0 6 1
PJA1 WILD-TYPE 20 85 56
'PJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S575.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
PJA1 MUTATED 1 3 0
PJA1 WILD-TYPE 45 32 24
'PJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S576.  Gene #54: 'PJA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
PJA1 MUTATED 0 3 1
PJA1 WILD-TYPE 11 43 47
'SUN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S577.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SUN1 MUTATED 3 3 2
SUN1 WILD-TYPE 64 69 31
'SUN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S578.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SUN1 MUTATED 1 2 1
SUN1 WILD-TYPE 33 31 42
'SUN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S579.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SUN1 MUTATED 3 2 0
SUN1 WILD-TYPE 70 21 39
'SUN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S580.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SUN1 MUTATED 2 2 1
SUN1 WILD-TYPE 75 24 31
'SUN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Chi-square test), Q value = 1

Table S581.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SUN1 MUTATED 3 1 2 2 0
SUN1 WILD-TYPE 55 36 27 32 13
'SUN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S582.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SUN1 MUTATED 3 2 3
SUN1 WILD-TYPE 49 61 53
'SUN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 1

Table S583.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SUN1 MUTATED 0 6 1
SUN1 WILD-TYPE 59 74 28
'SUN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S584.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SUN1 MUTATED 1 6 0
SUN1 WILD-TYPE 19 85 57
'SUN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S585.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SUN1 MUTATED 1 1 2
SUN1 WILD-TYPE 45 34 22
'SUN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S586.  Gene #55: 'SUN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SUN1 MUTATED 1 2 1
SUN1 WILD-TYPE 10 44 47
'PABPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S587.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
PABPC3 MUTATED 4 3 2
PABPC3 WILD-TYPE 63 69 31
'PABPC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S588.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
PABPC3 MUTATED 2 3 0
PABPC3 WILD-TYPE 32 30 43
'PABPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
PABPC3 MUTATED 4 1 2
PABPC3 WILD-TYPE 69 22 37
'PABPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S590.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
PABPC3 MUTATED 4 2 1
PABPC3 WILD-TYPE 73 24 31
'PABPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Chi-square test), Q value = 1

Table S591.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
PABPC3 MUTATED 4 2 0 2 1
PABPC3 WILD-TYPE 54 35 29 32 12
'PABPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S592.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
PABPC3 MUTATED 3 4 2
PABPC3 WILD-TYPE 49 59 54
'PABPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S593.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
PABPC3 MUTATED 5 3 0
PABPC3 WILD-TYPE 54 77 29
'PABPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S594.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
PABPC3 MUTATED 0 3 5
PABPC3 WILD-TYPE 20 88 52
'PABPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S595.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
PABPC3 MUTATED 4 1 0
PABPC3 WILD-TYPE 42 34 24
'PABPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S596.  Gene #56: 'PABPC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
PABPC3 MUTATED 0 2 3
PABPC3 WILD-TYPE 11 44 45
'STXBP5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S597.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
STXBP5L MUTATED 5 4 3
STXBP5L WILD-TYPE 62 68 30
'STXBP5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S598.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
STXBP5L MUTATED 0 4 4
STXBP5L WILD-TYPE 34 29 39
'STXBP5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S599.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
STXBP5L MUTATED 5 2 4
STXBP5L WILD-TYPE 68 21 35
'STXBP5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S600.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
STXBP5L MUTATED 6 3 2
STXBP5L WILD-TYPE 71 23 30
'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Chi-square test), Q value = 1

Table S601.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
STXBP5L MUTATED 4 4 1 2 1
STXBP5L WILD-TYPE 54 33 28 32 12
'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S602.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
STXBP5L MUTATED 5 6 1
STXBP5L WILD-TYPE 47 57 55
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S603.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
STXBP5L MUTATED 7 4 1
STXBP5L WILD-TYPE 52 76 28
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S604.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
STXBP5L MUTATED 1 5 6
STXBP5L WILD-TYPE 19 86 51
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S605.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
STXBP5L MUTATED 5 1 1
STXBP5L WILD-TYPE 41 34 23
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S606.  Gene #57: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
STXBP5L MUTATED 0 2 5
STXBP5L WILD-TYPE 11 44 43
'ELTD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S607.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ELTD1 MUTATED 0 2 0 1
ELTD1 WILD-TYPE 5 7 12 5
'ELTD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ELTD1 MUTATED 1 1 1
ELTD1 WILD-TYPE 6 12 11
'ELTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S609.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ELTD1 MUTATED 8 5 2
ELTD1 WILD-TYPE 59 67 31
'ELTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S610.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ELTD1 MUTATED 3 7 1
ELTD1 WILD-TYPE 31 26 42

Figure S57.  Get High-res Image Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ELTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S611.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ELTD1 MUTATED 9 0 5
ELTD1 WILD-TYPE 64 23 34
'ELTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S612.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ELTD1 MUTATED 8 2 4
ELTD1 WILD-TYPE 69 24 28
'ELTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Chi-square test), Q value = 1

Table S613.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ELTD1 MUTATED 10 0 3 2 0
ELTD1 WILD-TYPE 48 37 26 32 13

Figure S58.  Get High-res Image Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ELTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 1

Table S614.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ELTD1 MUTATED 9 1 5
ELTD1 WILD-TYPE 43 62 51

Figure S59.  Get High-res Image Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ELTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S615.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ELTD1 MUTATED 2 9 3
ELTD1 WILD-TYPE 57 71 26
'ELTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S616.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ELTD1 MUTATED 0 12 2
ELTD1 WILD-TYPE 20 79 55

Figure S60.  Get High-res Image Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ELTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S617.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ELTD1 MUTATED 2 6 2
ELTD1 WILD-TYPE 44 29 22
'ELTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00804 (Fisher's exact test), Q value = 1

Table S618.  Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ELTD1 MUTATED 0 9 1
ELTD1 WILD-TYPE 11 37 47

Figure S61.  Get High-res Image Gene #58: 'ELTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S619.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KRT28 MUTATED 4 2 1
KRT28 WILD-TYPE 63 70 32
'KRT28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S620.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KRT28 MUTATED 2 0 3
KRT28 WILD-TYPE 32 33 40
'KRT28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S621.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KRT28 MUTATED 5 0 1
KRT28 WILD-TYPE 68 23 38
'KRT28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S622.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KRT28 MUTATED 5 0 1
KRT28 WILD-TYPE 72 26 31
'KRT28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Chi-square test), Q value = 1

Table S623.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KRT28 MUTATED 3 1 2 1 0
KRT28 WILD-TYPE 55 36 27 33 13
'KRT28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S624.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KRT28 MUTATED 2 2 3
KRT28 WILD-TYPE 50 61 53
'KRT28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S625.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KRT28 MUTATED 2 4 1
KRT28 WILD-TYPE 57 76 28
'KRT28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S626.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KRT28 MUTATED 1 5 1
KRT28 WILD-TYPE 19 86 56
'KRT28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S627.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KRT28 MUTATED 1 2 2
KRT28 WILD-TYPE 45 33 22
'KRT28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S628.  Gene #59: 'KRT28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KRT28 MUTATED 0 3 2
KRT28 WILD-TYPE 11 43 46
'EPHA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S629.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
EPHA6 MUTATED 1 2 1 1
EPHA6 WILD-TYPE 4 7 11 5
'EPHA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S630.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
EPHA6 MUTATED 2 2 1
EPHA6 WILD-TYPE 5 11 11
'EPHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S631.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
EPHA6 MUTATED 6 10 6
EPHA6 WILD-TYPE 61 62 27
'EPHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S632.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
EPHA6 MUTATED 3 3 5
EPHA6 WILD-TYPE 31 30 38
'EPHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S633.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
EPHA6 MUTATED 6 1 7
EPHA6 WILD-TYPE 67 22 32
'EPHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S634.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
EPHA6 MUTATED 5 3 6
EPHA6 WILD-TYPE 72 23 26
'EPHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Chi-square test), Q value = 1

Table S635.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
EPHA6 MUTATED 9 4 1 7 1
EPHA6 WILD-TYPE 49 33 28 27 12
'EPHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S636.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
EPHA6 MUTATED 8 6 8
EPHA6 WILD-TYPE 44 57 48
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 1

Table S637.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
EPHA6 MUTATED 5 15 1
EPHA6 WILD-TYPE 54 65 28
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 1

Table S638.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
EPHA6 MUTATED 0 17 4
EPHA6 WILD-TYPE 20 74 53

Figure S62.  Get High-res Image Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S639.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
EPHA6 MUTATED 5 3 1
EPHA6 WILD-TYPE 41 32 23
'EPHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S640.  Gene #60: 'EPHA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
EPHA6 MUTATED 0 6 3
EPHA6 WILD-TYPE 11 40 45
'TLR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S641.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TLR4 MUTATED 9 10 4
TLR4 WILD-TYPE 58 62 29
'TLR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S642.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TLR4 MUTATED 3 8 6
TLR4 WILD-TYPE 31 25 37
'TLR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S643.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TLR4 MUTATED 11 3 4
TLR4 WILD-TYPE 62 20 35
'TLR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S644.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TLR4 MUTATED 12 4 2
TLR4 WILD-TYPE 65 22 30
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Chi-square test), Q value = 1

Table S645.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TLR4 MUTATED 12 2 3 4 2
TLR4 WILD-TYPE 46 35 26 30 11
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S646.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TLR4 MUTATED 10 6 7
TLR4 WILD-TYPE 42 57 49
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S647.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TLR4 MUTATED 4 12 6
TLR4 WILD-TYPE 55 68 23
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S648.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TLR4 MUTATED 2 16 4
TLR4 WILD-TYPE 18 75 53
'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S649.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TLR4 MUTATED 6 7 4
TLR4 WILD-TYPE 40 28 20
'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S650.  Gene #61: 'TLR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TLR4 MUTATED 1 11 5
TLR4 WILD-TYPE 10 35 43
'OR10R2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S651.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR10R2 MUTATED 4 5 1
OR10R2 WILD-TYPE 63 67 32
'OR10R2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S652.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR10R2 MUTATED 2 4 2
OR10R2 WILD-TYPE 32 29 41
'OR10R2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S653.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR10R2 MUTATED 4 1 4
OR10R2 WILD-TYPE 69 22 35
'OR10R2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S654.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR10R2 MUTATED 5 2 2
OR10R2 WILD-TYPE 72 24 30
'OR10R2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Chi-square test), Q value = 1

Table S655.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR10R2 MUTATED 3 1 2 3 1
OR10R2 WILD-TYPE 55 36 27 31 12
'OR10R2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S656.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR10R2 MUTATED 3 4 3
OR10R2 WILD-TYPE 49 59 53
'OR10R2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S657.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR10R2 MUTATED 1 6 3
OR10R2 WILD-TYPE 58 74 26
'OR10R2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 1

Table S658.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR10R2 MUTATED 0 9 1
OR10R2 WILD-TYPE 20 82 56
'OR10R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S659.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR10R2 MUTATED 3 3 1
OR10R2 WILD-TYPE 43 32 23
'OR10R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S660.  Gene #62: 'OR10R2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR10R2 MUTATED 0 5 2
OR10R2 WILD-TYPE 11 41 46
'OR6F1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S661.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
OR6F1 MUTATED 0 3 2 0
OR6F1 WILD-TYPE 5 6 10 6
'OR6F1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S662.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
OR6F1 MUTATED 0 2 3
OR6F1 WILD-TYPE 7 11 9
'OR6F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S663.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR6F1 MUTATED 2 6 2
OR6F1 WILD-TYPE 65 66 31
'OR6F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S664.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR6F1 MUTATED 1 3 1
OR6F1 WILD-TYPE 33 30 42
'OR6F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S665.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR6F1 MUTATED 4 0 1
OR6F1 WILD-TYPE 69 23 38
'OR6F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S666.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR6F1 MUTATED 4 0 1
OR6F1 WILD-TYPE 73 26 31
'OR6F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Chi-square test), Q value = 1

Table S667.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR6F1 MUTATED 5 4 1 0 0
OR6F1 WILD-TYPE 53 33 28 34 13
'OR6F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S668.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR6F1 MUTATED 5 4 1
OR6F1 WILD-TYPE 47 59 55
'OR6F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S669.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR6F1 MUTATED 4 4 1
OR6F1 WILD-TYPE 55 76 28
'OR6F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S670.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR6F1 MUTATED 2 4 3
OR6F1 WILD-TYPE 18 87 54
'OR6F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S671.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR6F1 MUTATED 2 1 0
OR6F1 WILD-TYPE 44 34 24
'OR6F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S672.  Gene #63: 'OR6F1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR6F1 MUTATED 0 1 2
OR6F1 WILD-TYPE 11 45 46
'DACT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S673.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
DACT1 MUTATED 0 0 1 2
DACT1 WILD-TYPE 5 9 11 4
'DACT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S674.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
DACT1 MUTATED 2 1 0
DACT1 WILD-TYPE 5 12 12
'DACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S675.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DACT1 MUTATED 6 3 1
DACT1 WILD-TYPE 61 69 32
'DACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S676.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
DACT1 MUTATED 1 4 2
DACT1 WILD-TYPE 33 29 41
'DACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S677.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
DACT1 MUTATED 3 3 3
DACT1 WILD-TYPE 70 20 36
'DACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S678.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
DACT1 MUTATED 4 3 2
DACT1 WILD-TYPE 73 23 30
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Chi-square test), Q value = 1

Table S679.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DACT1 MUTATED 6 1 1 2 0
DACT1 WILD-TYPE 52 36 28 32 13
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S680.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DACT1 MUTATED 5 2 3
DACT1 WILD-TYPE 47 61 53
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S681.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DACT1 MUTATED 3 6 1
DACT1 WILD-TYPE 56 74 28
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S682.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DACT1 MUTATED 1 7 2
DACT1 WILD-TYPE 19 84 55
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S683.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
DACT1 MUTATED 2 3 2
DACT1 WILD-TYPE 44 32 22
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S684.  Gene #64: 'DACT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
DACT1 MUTATED 0 5 2
DACT1 WILD-TYPE 11 41 46
'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S685.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
APC MUTATED 5 2 3
APC WILD-TYPE 62 70 30
'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S686.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
APC MUTATED 3 1 1
APC WILD-TYPE 31 32 42
'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S687.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
APC MUTATED 4 1 3
APC WILD-TYPE 69 22 36
'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S688.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
APC MUTATED 5 1 2
APC WILD-TYPE 72 25 30
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Chi-square test), Q value = 1

Table S689.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
APC MUTATED 4 0 2 4 0
APC WILD-TYPE 54 37 27 30 13
'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00496 (Fisher's exact test), Q value = 1

Table S690.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
APC MUTATED 1 1 8
APC WILD-TYPE 51 62 48

Figure S63.  Get High-res Image Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 1

Table S691.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
APC MUTATED 0 9 1
APC WILD-TYPE 59 71 28

Figure S64.  Get High-res Image Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S692.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
APC MUTATED 1 9 0
APC WILD-TYPE 19 82 57

Figure S65.  Get High-res Image Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 1

Table S693.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
APC MUTATED 0 3 2
APC WILD-TYPE 46 32 22
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 1

Table S694.  Gene #65: 'APC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
APC MUTATED 1 4 0
APC WILD-TYPE 10 42 48
'SCG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S695.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SCG2 MUTATED 3 2 3
SCG2 WILD-TYPE 64 70 30
'SCG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S696.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SCG2 MUTATED 2 3 1
SCG2 WILD-TYPE 32 30 42
'SCG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S697.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SCG2 MUTATED 3 2 2
SCG2 WILD-TYPE 70 21 37
'SCG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S698.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SCG2 MUTATED 2 3 2
SCG2 WILD-TYPE 75 23 30
'SCG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Chi-square test), Q value = 1

Table S699.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SCG2 MUTATED 3 0 1 4 0
SCG2 WILD-TYPE 55 37 28 30 13
'SCG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S700.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SCG2 MUTATED 2 2 4
SCG2 WILD-TYPE 50 61 52
'SCG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S701.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SCG2 MUTATED 2 5 1
SCG2 WILD-TYPE 57 75 28
'SCG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S702.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SCG2 MUTATED 0 6 2
SCG2 WILD-TYPE 20 85 55
'SCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S703.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SCG2 MUTATED 2 2 1
SCG2 WILD-TYPE 44 33 23
'SCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S704.  Gene #66: 'SCG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SCG2 MUTATED 0 3 2
SCG2 WILD-TYPE 11 43 46
'THEMIS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S705.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
THEMIS MUTATED 1 0 2 1
THEMIS WILD-TYPE 4 9 10 5
'THEMIS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S706.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
THEMIS MUTATED 1 2 1
THEMIS WILD-TYPE 6 11 11
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S707.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
THEMIS MUTATED 6 4 0
THEMIS WILD-TYPE 61 68 33
'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S708.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
THEMIS MUTATED 1 3 0
THEMIS WILD-TYPE 33 30 43
'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S709.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
THEMIS MUTATED 4 1 3
THEMIS WILD-TYPE 69 22 36
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S710.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
THEMIS MUTATED 5 1 2
THEMIS WILD-TYPE 72 25 30
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Chi-square test), Q value = 1

Table S711.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
THEMIS MUTATED 2 3 2 2 1
THEMIS WILD-TYPE 56 34 27 32 12
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S712.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
THEMIS MUTATED 2 5 3
THEMIS WILD-TYPE 50 58 53
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S713.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
THEMIS MUTATED 3 6 0
THEMIS WILD-TYPE 56 74 29
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S714.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
THEMIS MUTATED 0 6 3
THEMIS WILD-TYPE 20 85 54
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S715.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
THEMIS MUTATED 3 0 0
THEMIS WILD-TYPE 43 35 24
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S716.  Gene #67: 'THEMIS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
THEMIS MUTATED 0 0 3
THEMIS WILD-TYPE 11 46 45
'BRE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S717.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
BRE MUTATED 2 1 1
BRE WILD-TYPE 65 71 32
'BRE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 1

Table S718.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
BRE MUTATED 0 3 0
BRE WILD-TYPE 34 30 43

Figure S66.  Get High-res Image Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Chi-square test), Q value = 1

Table S719.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
BRE MUTATED 2 1 0 1 0
BRE WILD-TYPE 56 36 29 33 13
'BRE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S720.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
BRE MUTATED 1 2 1
BRE WILD-TYPE 51 61 55
'BRE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S721.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
BRE MUTATED 0 4 0
BRE WILD-TYPE 59 76 29
'BRE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S722.  Gene #68: 'BRE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
BRE MUTATED 0 4 0
BRE WILD-TYPE 20 87 57
'SERPINB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S723.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SERPINB13 MUTATED 2 4 3
SERPINB13 WILD-TYPE 65 68 30
'SERPINB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S724.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SERPINB13 MUTATED 1 1 3
SERPINB13 WILD-TYPE 33 32 40
'SERPINB13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S725.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SERPINB13 MUTATED 4 1 3
SERPINB13 WILD-TYPE 69 22 36
'SERPINB13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S726.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SERPINB13 MUTATED 3 1 4
SERPINB13 WILD-TYPE 74 25 28
'SERPINB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Chi-square test), Q value = 1

Table S727.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SERPINB13 MUTATED 3 1 2 3 0
SERPINB13 WILD-TYPE 55 36 27 31 13
'SERPINB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S728.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SERPINB13 MUTATED 3 1 5
SERPINB13 WILD-TYPE 49 62 51
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S729.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SERPINB13 MUTATED 1 5 2
SERPINB13 WILD-TYPE 58 75 27
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 1

Table S730.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SERPINB13 MUTATED 2 6 0
SERPINB13 WILD-TYPE 18 85 57

Figure S67.  Get High-res Image Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S731.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SERPINB13 MUTATED 0 2 3
SERPINB13 WILD-TYPE 46 33 21

Figure S68.  Get High-res Image Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 1

Table S732.  Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SERPINB13 MUTATED 2 3 0
SERPINB13 WILD-TYPE 9 43 48

Figure S69.  Get High-res Image Gene #69: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S733.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GATA3 MUTATED 4 2 0
GATA3 WILD-TYPE 63 70 33
'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S734.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GATA3 MUTATED 2 1 2
GATA3 WILD-TYPE 71 22 37
'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S735.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GATA3 MUTATED 3 0 2
GATA3 WILD-TYPE 74 26 30
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Chi-square test), Q value = 1

Table S736.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GATA3 MUTATED 1 1 1 2 1
GATA3 WILD-TYPE 57 36 28 32 12
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S737.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GATA3 MUTATED 2 1 3
GATA3 WILD-TYPE 50 62 53
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S738.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GATA3 MUTATED 2 2 2
GATA3 WILD-TYPE 57 78 27
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S739.  Gene #70: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GATA3 MUTATED 0 5 1
GATA3 WILD-TYPE 20 86 56
'GNG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S740.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GNG2 MUTATED 3 1 0
GNG2 WILD-TYPE 64 71 33
'GNG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S741.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GNG2 MUTATED 2 0 1
GNG2 WILD-TYPE 32 33 42
'GNG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S742.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GNG2 MUTATED 1 1 1
GNG2 WILD-TYPE 72 22 38
'GNG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S743.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GNG2 MUTATED 1 1 1
GNG2 WILD-TYPE 76 25 31
'GNG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0292 (Chi-square test), Q value = 1

Table S744.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GNG2 MUTATED 0 0 3 1 0
GNG2 WILD-TYPE 58 37 26 33 13

Figure S70.  Get High-res Image Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S745.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GNG2 MUTATED 0 0 4
GNG2 WILD-TYPE 52 63 52

Figure S71.  Get High-res Image Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S746.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GNG2 MUTATED 0 4 0
GNG2 WILD-TYPE 59 76 29
'GNG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S747.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GNG2 MUTATED 0 4 0
GNG2 WILD-TYPE 20 87 57
'GNG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S748.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GNG2 MUTATED 1 1 1
GNG2 WILD-TYPE 45 34 23
'GNG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S749.  Gene #71: 'GNG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GNG2 MUTATED 0 2 1
GNG2 WILD-TYPE 11 44 47
'TSHZ3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 1

Table S750.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
TSHZ3 MUTATED 1 4 0 2
TSHZ3 WILD-TYPE 4 5 12 4
'TSHZ3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 1

Table S751.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
TSHZ3 MUTATED 2 0 5
TSHZ3 WILD-TYPE 5 13 7

Figure S72.  Get High-res Image Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TSHZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S752.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TSHZ3 MUTATED 9 8 8
TSHZ3 WILD-TYPE 58 64 25
'TSHZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S753.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TSHZ3 MUTATED 5 5 5
TSHZ3 WILD-TYPE 29 28 38
'TSHZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S754.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TSHZ3 MUTATED 11 2 8
TSHZ3 WILD-TYPE 62 21 31
'TSHZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S755.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TSHZ3 MUTATED 14 1 6
TSHZ3 WILD-TYPE 63 25 26
'TSHZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Chi-square test), Q value = 1

Table S756.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TSHZ3 MUTATED 11 1 5 6 2
TSHZ3 WILD-TYPE 47 36 24 28 11
'TSHZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 1

Table S757.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TSHZ3 MUTATED 9 4 12
TSHZ3 WILD-TYPE 43 59 44

Figure S73.  Get High-res Image Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSHZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S758.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TSHZ3 MUTATED 7 15 3
TSHZ3 WILD-TYPE 52 65 26
'TSHZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 1

Table S759.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TSHZ3 MUTATED 0 17 8
TSHZ3 WILD-TYPE 20 74 49
'TSHZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S760.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TSHZ3 MUTATED 4 7 3
TSHZ3 WILD-TYPE 42 28 21
'TSHZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S761.  Gene #72: 'TSHZ3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TSHZ3 MUTATED 1 7 6
TSHZ3 WILD-TYPE 10 39 42
'FGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S762.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FGB MUTATED 2 5 3
FGB WILD-TYPE 65 67 30
'FGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S763.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FGB MUTATED 1 1 5
FGB WILD-TYPE 33 32 38
'FGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S764.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FGB MUTATED 5 1 2
FGB WILD-TYPE 68 22 37
'FGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S765.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FGB MUTATED 5 1 2
FGB WILD-TYPE 72 25 30
'FGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.995 (Chi-square test), Q value = 1

Table S766.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FGB MUTATED 3 2 2 2 1
FGB WILD-TYPE 55 35 27 32 12
'FGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S767.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FGB MUTATED 4 3 3
FGB WILD-TYPE 48 60 53
'FGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S768.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FGB MUTATED 5 3 2
FGB WILD-TYPE 54 77 27
'FGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S769.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FGB MUTATED 1 5 4
FGB WILD-TYPE 19 86 53
'FGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S770.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FGB MUTATED 5 0 1
FGB WILD-TYPE 41 35 23
'FGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S771.  Gene #73: 'FGB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FGB MUTATED 0 2 4
FGB WILD-TYPE 11 44 44
'PDGFA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S772.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
PDGFA MUTATED 2 1 2
PDGFA WILD-TYPE 65 71 31
'PDGFA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S773.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
PDGFA MUTATED 1 3 0
PDGFA WILD-TYPE 33 30 43
'PDGFA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S774.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
PDGFA MUTATED 4 0 0
PDGFA WILD-TYPE 69 23 39
'PDGFA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S775.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
PDGFA MUTATED 3 1 0
PDGFA WILD-TYPE 74 25 32
'PDGFA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Chi-square test), Q value = 1

Table S776.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
PDGFA MUTATED 1 0 1 2 1
PDGFA WILD-TYPE 57 37 28 32 12
'PDGFA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S777.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
PDGFA MUTATED 1 2 2
PDGFA WILD-TYPE 51 61 54
'PDGFA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S778.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
PDGFA MUTATED 2 3 0
PDGFA WILD-TYPE 57 77 29
'PDGFA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S779.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
PDGFA MUTATED 0 3 2
PDGFA WILD-TYPE 20 88 55
'PDGFA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S780.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
PDGFA MUTATED 3 0 0
PDGFA WILD-TYPE 43 35 24
'PDGFA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S781.  Gene #74: 'PDGFA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
PDGFA MUTATED 0 0 3
PDGFA WILD-TYPE 11 46 45
'F8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S782.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
F8 MUTATED 0 1 1 1
F8 WILD-TYPE 5 8 11 5
'F8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S783.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
F8 MUTATED 1 2 0
F8 WILD-TYPE 6 11 12
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S784.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
F8 MUTATED 7 4 4
F8 WILD-TYPE 60 68 29
'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S785.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
F8 MUTATED 4 4 3
F8 WILD-TYPE 30 29 40
'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S786.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
F8 MUTATED 6 2 4
F8 WILD-TYPE 67 21 35
'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S787.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
F8 MUTATED 6 2 4
F8 WILD-TYPE 71 24 28
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Chi-square test), Q value = 1

Table S788.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
F8 MUTATED 5 3 1 6 0
F8 WILD-TYPE 53 34 28 28 13
'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S789.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
F8 MUTATED 6 3 6
F8 WILD-TYPE 46 60 50
'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S790.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
F8 MUTATED 4 6 4
F8 WILD-TYPE 55 74 25
'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S791.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
F8 MUTATED 2 10 2
F8 WILD-TYPE 18 81 55
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S792.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
F8 MUTATED 4 4 2
F8 WILD-TYPE 42 31 22
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S793.  Gene #75: 'F8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
F8 MUTATED 1 5 4
F8 WILD-TYPE 10 41 44
'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S794.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
EPHB6 MUTATED 7 7 5
EPHB6 WILD-TYPE 60 65 28
'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 1

Table S795.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
EPHB6 MUTATED 1 7 7
EPHB6 WILD-TYPE 33 26 36
'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S796.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
EPHB6 MUTATED 9 2 7
EPHB6 WILD-TYPE 64 21 32
'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S797.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
EPHB6 MUTATED 8 4 6
EPHB6 WILD-TYPE 69 22 26
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Chi-square test), Q value = 1

Table S798.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
EPHB6 MUTATED 9 2 2 5 1
EPHB6 WILD-TYPE 49 35 27 29 12
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S799.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
EPHB6 MUTATED 8 5 6
EPHB6 WILD-TYPE 44 58 50
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S800.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
EPHB6 MUTATED 8 7 4
EPHB6 WILD-TYPE 51 73 25
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S801.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
EPHB6 MUTATED 0 11 8
EPHB6 WILD-TYPE 20 80 49
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S802.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
EPHB6 MUTATED 7 4 4
EPHB6 WILD-TYPE 39 31 20
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S803.  Gene #76: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
EPHB6 MUTATED 1 5 9
EPHB6 WILD-TYPE 10 41 39
'CTRC MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S804.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CTRC MUTATED 2 2 0
CTRC WILD-TYPE 65 70 33
'CTRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S805.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CTRC MUTATED 0 2 2
CTRC WILD-TYPE 34 31 41
'CTRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S806.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CTRC MUTATED 4 0 0
CTRC WILD-TYPE 69 23 39
'CTRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S807.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CTRC MUTATED 3 1 0
CTRC WILD-TYPE 74 25 32
'CTRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Chi-square test), Q value = 1

Table S808.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CTRC MUTATED 2 0 1 1 0
CTRC WILD-TYPE 56 37 28 33 13
'CTRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S809.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CTRC MUTATED 1 2 1
CTRC WILD-TYPE 51 61 55
'CTRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S810.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CTRC MUTATED 1 2 1
CTRC WILD-TYPE 58 78 28
'CTRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S811.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CTRC MUTATED 1 3 0
CTRC WILD-TYPE 19 88 57
'CTRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S812.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CTRC MUTATED 1 2 1
CTRC WILD-TYPE 45 33 23
'CTRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S813.  Gene #77: 'CTRC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CTRC MUTATED 0 2 2
CTRC WILD-TYPE 11 44 46
'C12ORF74 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S814.  Gene #78: 'C12ORF74 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C12ORF74 MUTATED 1 2 0
C12ORF74 WILD-TYPE 66 70 33
'C12ORF74 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Chi-square test), Q value = 1

Table S815.  Gene #78: 'C12ORF74 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C12ORF74 MUTATED 1 1 0 0 1
C12ORF74 WILD-TYPE 57 36 29 34 12
'C12ORF74 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S816.  Gene #78: 'C12ORF74 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C12ORF74 MUTATED 0 3 0
C12ORF74 WILD-TYPE 52 60 56
'C12ORF74 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S817.  Gene #78: 'C12ORF74 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C12ORF74 MUTATED 3 0 0
C12ORF74 WILD-TYPE 56 80 29
'C12ORF74 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 1

Table S818.  Gene #78: 'C12ORF74 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C12ORF74 MUTATED 0 0 3
C12ORF74 WILD-TYPE 20 91 54
'DENND2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S819.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DENND2A MUTATED 4 2 3
DENND2A WILD-TYPE 63 70 30
'DENND2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 1

Table S820.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
DENND2A MUTATED 1 5 0
DENND2A WILD-TYPE 33 28 43

Figure S74.  Get High-res Image Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DENND2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S821.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
DENND2A MUTATED 6 0 2
DENND2A WILD-TYPE 67 23 37
'DENND2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S822.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
DENND2A MUTATED 5 1 2
DENND2A WILD-TYPE 72 25 30
'DENND2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0599 (Chi-square test), Q value = 1

Table S823.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DENND2A MUTATED 3 0 1 5 0
DENND2A WILD-TYPE 55 37 28 29 13
'DENND2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S824.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DENND2A MUTATED 3 1 5
DENND2A WILD-TYPE 49 62 51
'DENND2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 1

Table S825.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DENND2A MUTATED 1 8 0
DENND2A WILD-TYPE 58 72 29
'DENND2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S826.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DENND2A MUTATED 0 8 1
DENND2A WILD-TYPE 20 83 56
'DENND2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S827.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
DENND2A MUTATED 3 3 0
DENND2A WILD-TYPE 43 32 24
'DENND2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S828.  Gene #79: 'DENND2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
DENND2A MUTATED 0 4 2
DENND2A WILD-TYPE 11 42 46
'POF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S829.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
POF1B MUTATED 3 5 1
POF1B WILD-TYPE 64 67 32
'POF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S830.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
POF1B MUTATED 0 3 2
POF1B WILD-TYPE 34 30 41
'POF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S831.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
POF1B MUTATED 5 2 0
POF1B WILD-TYPE 68 21 39
'POF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S832.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
POF1B MUTATED 5 1 1
POF1B WILD-TYPE 72 25 31
'POF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Chi-square test), Q value = 1

Table S833.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
POF1B MUTATED 4 3 1 0 1
POF1B WILD-TYPE 54 34 28 34 12
'POF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S834.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
POF1B MUTATED 4 4 1
POF1B WILD-TYPE 48 59 55
'POF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S835.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
POF1B MUTATED 4 3 1
POF1B WILD-TYPE 55 77 28
'POF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S836.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
POF1B MUTATED 3 3 2
POF1B WILD-TYPE 17 88 55
'POF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S837.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
POF1B MUTATED 1 3 1
POF1B WILD-TYPE 45 32 23
'POF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S838.  Gene #80: 'POF1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
POF1B MUTATED 0 3 2
POF1B WILD-TYPE 11 43 46
'TMTC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S839.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
TMTC1 MUTATED 0 2 0 1
TMTC1 WILD-TYPE 5 7 12 5
'TMTC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S840.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
TMTC1 MUTATED 1 0 2
TMTC1 WILD-TYPE 6 13 10
'TMTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 1

Table S841.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TMTC1 MUTATED 9 5 8
TMTC1 WILD-TYPE 58 67 25

Figure S75.  Get High-res Image Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S842.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TMTC1 MUTATED 4 5 5
TMTC1 WILD-TYPE 30 28 38
'TMTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S843.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TMTC1 MUTATED 11 1 5
TMTC1 WILD-TYPE 62 22 34
'TMTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S844.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TMTC1 MUTATED 12 1 4
TMTC1 WILD-TYPE 65 25 28
'TMTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Chi-square test), Q value = 1

Table S845.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TMTC1 MUTATED 8 2 5 5 2
TMTC1 WILD-TYPE 50 35 24 29 11
'TMTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S846.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TMTC1 MUTATED 8 6 8
TMTC1 WILD-TYPE 44 57 48
'TMTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S847.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TMTC1 MUTATED 6 12 2
TMTC1 WILD-TYPE 53 68 27
'TMTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S848.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TMTC1 MUTATED 1 13 6
TMTC1 WILD-TYPE 19 78 51
'TMTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S849.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TMTC1 MUTATED 5 6 2
TMTC1 WILD-TYPE 41 29 22
'TMTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S850.  Gene #81: 'TMTC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TMTC1 MUTATED 0 7 6
TMTC1 WILD-TYPE 11 39 42
'OR2F2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S851.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR2F2 MUTATED 2 2 2
OR2F2 WILD-TYPE 65 70 31
'OR2F2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S852.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR2F2 MUTATED 1 3 2
OR2F2 WILD-TYPE 33 30 41
'OR2F2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S853.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR2F2 MUTATED 4 1 1
OR2F2 WILD-TYPE 69 22 38
'OR2F2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S854.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR2F2 MUTATED 4 1 1
OR2F2 WILD-TYPE 73 25 31
'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Chi-square test), Q value = 1

Table S855.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR2F2 MUTATED 4 1 0 1 0
OR2F2 WILD-TYPE 54 36 29 33 13
'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S856.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR2F2 MUTATED 3 2 1
OR2F2 WILD-TYPE 49 61 55
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S857.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR2F2 MUTATED 1 5 0
OR2F2 WILD-TYPE 58 75 29
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S858.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR2F2 MUTATED 0 5 1
OR2F2 WILD-TYPE 20 86 56
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S859.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR2F2 MUTATED 2 2 0
OR2F2 WILD-TYPE 44 33 24
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S860.  Gene #82: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR2F2 MUTATED 0 3 1
OR2F2 WILD-TYPE 11 43 47
'SPATA18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S861.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SPATA18 MUTATED 4 3 1
SPATA18 WILD-TYPE 63 69 32
'SPATA18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S862.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SPATA18 MUTATED 2 1 2
SPATA18 WILD-TYPE 32 32 41
'SPATA18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S863.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SPATA18 MUTATED 3 3 1
SPATA18 WILD-TYPE 70 20 38
'SPATA18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S864.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SPATA18 MUTATED 4 3 0
SPATA18 WILD-TYPE 73 23 32
'SPATA18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Chi-square test), Q value = 1

Table S865.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SPATA18 MUTATED 3 3 1 1 0
SPATA18 WILD-TYPE 55 34 28 33 13
'SPATA18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S866.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SPATA18 MUTATED 3 3 2
SPATA18 WILD-TYPE 49 60 54
'SPATA18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SPATA18 MUTATED 3 4 1
SPATA18 WILD-TYPE 56 76 28
'SPATA18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S868.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SPATA18 MUTATED 0 5 3
SPATA18 WILD-TYPE 20 86 54
'SPATA18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S869.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SPATA18 MUTATED 4 0 1
SPATA18 WILD-TYPE 42 35 23
'SPATA18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S870.  Gene #83: 'SPATA18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SPATA18 MUTATED 0 2 3
SPATA18 WILD-TYPE 11 44 45
'FSCB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S871.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FSCB MUTATED 6 5 4
FSCB WILD-TYPE 61 67 29
'FSCB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S872.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FSCB MUTATED 3 1 6
FSCB WILD-TYPE 31 32 37
'FSCB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S873.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FSCB MUTATED 8 0 5
FSCB WILD-TYPE 65 23 34
'FSCB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S874.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FSCB MUTATED 10 0 3
FSCB WILD-TYPE 67 26 29
'FSCB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Chi-square test), Q value = 1

Table S875.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FSCB MUTATED 6 0 3 5 1
FSCB WILD-TYPE 52 37 26 29 12
'FSCB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S876.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FSCB MUTATED 2 3 10
FSCB WILD-TYPE 50 60 46

Figure S76.  Get High-res Image Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FSCB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 1

Table S877.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FSCB MUTATED 2 7 6
FSCB WILD-TYPE 57 73 23

Figure S77.  Get High-res Image Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FSCB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S878.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FSCB MUTATED 2 11 2
FSCB WILD-TYPE 18 80 55
'FSCB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S879.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FSCB MUTATED 1 3 5
FSCB WILD-TYPE 45 32 19

Figure S78.  Get High-res Image Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FSCB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S880.  Gene #84: 'FSCB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FSCB MUTATED 1 6 2
FSCB WILD-TYPE 10 40 46
'CDH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S881.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
CDH6 MUTATED 0 3 1 0
CDH6 WILD-TYPE 5 6 11 6
'CDH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S882.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
CDH6 MUTATED 0 2 2
CDH6 WILD-TYPE 7 11 10
'CDH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S883.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CDH6 MUTATED 6 6 5
CDH6 WILD-TYPE 61 66 28
'CDH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S884.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CDH6 MUTATED 5 5 5
CDH6 WILD-TYPE 29 28 38
'CDH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S885.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CDH6 MUTATED 8 1 6
CDH6 WILD-TYPE 65 22 33
'CDH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S886.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CDH6 MUTATED 9 1 5
CDH6 WILD-TYPE 68 25 27
'CDH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0555 (Chi-square test), Q value = 1

Table S887.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CDH6 MUTATED 9 0 3 2 3
CDH6 WILD-TYPE 49 37 26 32 10
'CDH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S888.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CDH6 MUTATED 7 3 7
CDH6 WILD-TYPE 45 60 49
'CDH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S889.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CDH6 MUTATED 3 9 5
CDH6 WILD-TYPE 56 71 24
'CDH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S890.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CDH6 MUTATED 1 12 4
CDH6 WILD-TYPE 19 79 53
'CDH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S891.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CDH6 MUTATED 6 3 2
CDH6 WILD-TYPE 40 32 22
'CDH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S892.  Gene #85: 'CDH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CDH6 MUTATED 0 6 5
CDH6 WILD-TYPE 11 40 43
'TTC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S893.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TTC18 MUTATED 2 2 1
TTC18 WILD-TYPE 65 70 32
'TTC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S894.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TTC18 MUTATED 2 0 2
TTC18 WILD-TYPE 71 23 37
'TTC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S895.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TTC18 MUTATED 2 0 2
TTC18 WILD-TYPE 75 26 30
'TTC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Chi-square test), Q value = 1

Table S896.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TTC18 MUTATED 2 0 1 2 0
TTC18 WILD-TYPE 56 37 28 32 13
'TTC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 1

Table S897.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TTC18 MUTATED 1 0 4
TTC18 WILD-TYPE 51 63 52
'TTC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S898.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TTC18 MUTATED 0 4 0
TTC18 WILD-TYPE 59 76 29
'TTC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S899.  Gene #86: 'TTC18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TTC18 MUTATED 0 4 0
TTC18 WILD-TYPE 20 87 57
'NALCN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S900.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
NALCN MUTATED 1 1 3 0
NALCN WILD-TYPE 4 8 9 6
'NALCN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S901.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
NALCN MUTATED 0 3 2
NALCN WILD-TYPE 7 10 10
'NALCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S902.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NALCN MUTATED 6 12 6
NALCN WILD-TYPE 61 60 27
'NALCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S903.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NALCN MUTATED 4 6 6
NALCN WILD-TYPE 30 27 37
'NALCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S904.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NALCN MUTATED 11 2 4
NALCN WILD-TYPE 62 21 35
'NALCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S905.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NALCN MUTATED 11 3 3
NALCN WILD-TYPE 66 23 29
'NALCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Chi-square test), Q value = 1

Table S906.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NALCN MUTATED 8 4 5 6 1
NALCN WILD-TYPE 50 33 24 28 12
'NALCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S907.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NALCN MUTATED 7 7 10
NALCN WILD-TYPE 45 56 46
'NALCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S908.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NALCN MUTATED 9 11 3
NALCN WILD-TYPE 50 69 26
'NALCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S909.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NALCN MUTATED 3 13 7
NALCN WILD-TYPE 17 78 50
'NALCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S910.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NALCN MUTATED 8 4 3
NALCN WILD-TYPE 38 31 21
'NALCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S911.  Gene #87: 'NALCN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NALCN MUTATED 1 8 6
NALCN WILD-TYPE 10 38 42
'ABCB5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S912.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ABCB5 MUTATED 0 1 0 2
ABCB5 WILD-TYPE 5 8 12 4
'ABCB5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S913.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ABCB5 MUTATED 2 0 1
ABCB5 WILD-TYPE 5 13 11
'ABCB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S914.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ABCB5 MUTATED 10 7 2
ABCB5 WILD-TYPE 57 65 31
'ABCB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S915.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ABCB5 MUTATED 3 5 3
ABCB5 WILD-TYPE 31 28 40
'ABCB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S916.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ABCB5 MUTATED 10 2 4
ABCB5 WILD-TYPE 63 21 35
'ABCB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S917.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ABCB5 MUTATED 8 3 5
ABCB5 WILD-TYPE 69 23 27
'ABCB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Chi-square test), Q value = 1

Table S918.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ABCB5 MUTATED 10 0 4 4 1
ABCB5 WILD-TYPE 48 37 25 30 12
'ABCB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S919.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ABCB5 MUTATED 7 4 8
ABCB5 WILD-TYPE 45 59 48
'ABCB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S920.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ABCB5 MUTATED 4 10 4
ABCB5 WILD-TYPE 55 70 25
'ABCB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S921.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ABCB5 MUTATED 1 13 4
ABCB5 WILD-TYPE 19 78 53
'ABCB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S922.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ABCB5 MUTATED 4 5 2
ABCB5 WILD-TYPE 42 30 22
'ABCB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S923.  Gene #88: 'ABCB5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ABCB5 MUTATED 1 7 3
ABCB5 WILD-TYPE 10 39 45
'OR5I1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S924.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR5I1 MUTATED 3 6 2
OR5I1 WILD-TYPE 64 66 31
'OR5I1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S925.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR5I1 MUTATED 4 3 3
OR5I1 WILD-TYPE 30 30 40
'OR5I1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S926.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR5I1 MUTATED 4 2 2
OR5I1 WILD-TYPE 69 21 37
'OR5I1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S927.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR5I1 MUTATED 3 3 2
OR5I1 WILD-TYPE 74 23 30
'OR5I1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.748 (Chi-square test), Q value = 1

Table S928.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR5I1 MUTATED 3 2 3 2 0
OR5I1 WILD-TYPE 55 35 26 32 13
'OR5I1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S929.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR5I1 MUTATED 3 3 4
OR5I1 WILD-TYPE 49 60 52
'OR5I1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S930.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR5I1 MUTATED 2 4 5
OR5I1 WILD-TYPE 57 76 24

Figure S79.  Get High-res Image Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR5I1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S931.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR5I1 MUTATED 1 8 2
OR5I1 WILD-TYPE 19 83 55
'OR5I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S932.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR5I1 MUTATED 4 2 4
OR5I1 WILD-TYPE 42 33 20
'OR5I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S933.  Gene #89: 'OR5I1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR5I1 MUTATED 1 5 4
OR5I1 WILD-TYPE 10 41 44
'COL5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S934.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL5A1 MUTATED 6 6 1
COL5A1 WILD-TYPE 61 66 32
'COL5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S935.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL5A1 MUTATED 3 3 4
COL5A1 WILD-TYPE 31 30 39
'COL5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S936.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL5A1 MUTATED 5 0 4
COL5A1 WILD-TYPE 68 23 35
'COL5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S937.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL5A1 MUTATED 7 0 2
COL5A1 WILD-TYPE 70 26 30
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Chi-square test), Q value = 1

Table S938.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL5A1 MUTATED 5 2 2 2 2
COL5A1 WILD-TYPE 53 35 27 32 11
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S939.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL5A1 MUTATED 3 6 4
COL5A1 WILD-TYPE 49 57 52
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S940.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL5A1 MUTATED 6 6 1
COL5A1 WILD-TYPE 53 74 28
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S941.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL5A1 MUTATED 0 7 6
COL5A1 WILD-TYPE 20 84 51
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S942.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL5A1 MUTATED 5 2 2
COL5A1 WILD-TYPE 41 33 22
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S943.  Gene #90: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL5A1 MUTATED 0 3 6
COL5A1 WILD-TYPE 11 43 42
'ITGAX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S944.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ITGAX MUTATED 1 2 0 0
ITGAX WILD-TYPE 4 7 12 6
'ITGAX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S945.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ITGAX MUTATED 1 0 2
ITGAX WILD-TYPE 6 13 10
'ITGAX MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S946.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ITGAX MUTATED 7 7 3
ITGAX WILD-TYPE 60 65 30
'ITGAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S947.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ITGAX MUTATED 3 3 3
ITGAX WILD-TYPE 31 30 40
'ITGAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S948.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ITGAX MUTATED 7 3 4
ITGAX WILD-TYPE 66 20 35
'ITGAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S949.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ITGAX MUTATED 8 2 4
ITGAX WILD-TYPE 69 24 28
'ITGAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Chi-square test), Q value = 1

Table S950.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ITGAX MUTATED 7 2 5 1 2
ITGAX WILD-TYPE 51 35 24 33 11
'ITGAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S951.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ITGAX MUTATED 8 4 5
ITGAX WILD-TYPE 44 59 51
'ITGAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S952.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ITGAX MUTATED 6 10 0
ITGAX WILD-TYPE 53 70 29
'ITGAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S953.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ITGAX MUTATED 2 8 6
ITGAX WILD-TYPE 18 83 51
'ITGAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S954.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ITGAX MUTATED 5 2 1
ITGAX WILD-TYPE 41 33 23
'ITGAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S955.  Gene #91: 'ITGAX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ITGAX MUTATED 0 3 5
ITGAX WILD-TYPE 11 43 43
'SVEP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S956.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
SVEP1 MUTATED 0 2 1 0
SVEP1 WILD-TYPE 5 7 11 6
'SVEP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S957.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
SVEP1 MUTATED 0 1 2
SVEP1 WILD-TYPE 7 12 10
'SVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S958.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SVEP1 MUTATED 8 9 4
SVEP1 WILD-TYPE 59 63 29
'SVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S959.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SVEP1 MUTATED 3 5 3
SVEP1 WILD-TYPE 31 28 40
'SVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S960.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SVEP1 MUTATED 8 3 3
SVEP1 WILD-TYPE 65 20 36
'SVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S961.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SVEP1 MUTATED 7 5 2
SVEP1 WILD-TYPE 70 21 30
'SVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Chi-square test), Q value = 1

Table S962.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SVEP1 MUTATED 7 4 3 5 2
SVEP1 WILD-TYPE 51 33 26 29 11
'SVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S963.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SVEP1 MUTATED 7 8 6
SVEP1 WILD-TYPE 45 55 50
'SVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S964.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SVEP1 MUTATED 10 7 3
SVEP1 WILD-TYPE 49 73 26
'SVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S965.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SVEP1 MUTATED 1 10 9
SVEP1 WILD-TYPE 19 81 48
'SVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S966.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SVEP1 MUTATED 5 2 4
SVEP1 WILD-TYPE 41 33 20
'SVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S967.  Gene #92: 'SVEP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SVEP1 MUTATED 2 3 6
SVEP1 WILD-TYPE 9 43 42
'FBXL7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S968.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
FBXL7 MUTATED 0 2 0 1
FBXL7 WILD-TYPE 5 7 12 5
'FBXL7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S969.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
FBXL7 MUTATED 1 0 2
FBXL7 WILD-TYPE 6 13 10
'FBXL7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S970.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FBXL7 MUTATED 6 5 6
FBXL7 WILD-TYPE 61 67 27
'FBXL7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 1

Table S971.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FBXL7 MUTATED 5 1 0
FBXL7 WILD-TYPE 29 32 43

Figure S80.  Get High-res Image Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXL7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S972.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FBXL7 MUTATED 4 2 4
FBXL7 WILD-TYPE 69 21 35
'FBXL7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S973.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FBXL7 MUTATED 4 3 3
FBXL7 WILD-TYPE 73 23 29
'FBXL7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Chi-square test), Q value = 1

Table S974.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FBXL7 MUTATED 5 2 4 6 0
FBXL7 WILD-TYPE 53 35 25 28 13
'FBXL7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S975.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FBXL7 MUTATED 5 3 9
FBXL7 WILD-TYPE 47 60 47
'FBXL7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S976.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FBXL7 MUTATED 4 10 2
FBXL7 WILD-TYPE 55 70 27
'FBXL7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S977.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FBXL7 MUTATED 0 12 4
FBXL7 WILD-TYPE 20 79 53
'FBXL7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S978.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FBXL7 MUTATED 1 3 2
FBXL7 WILD-TYPE 45 32 22
'FBXL7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S979.  Gene #93: 'FBXL7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FBXL7 MUTATED 0 4 2
FBXL7 WILD-TYPE 11 42 46
'RP1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S980.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
RP1L1 MUTATED 0 2 1 0
RP1L1 WILD-TYPE 5 7 11 6
'RP1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S981.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
RP1L1 MUTATED 0 1 2
RP1L1 WILD-TYPE 7 12 10
'RP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S982.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RP1L1 MUTATED 10 12 10
RP1L1 WILD-TYPE 57 60 23
'RP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S983.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RP1L1 MUTATED 6 9 8
RP1L1 WILD-TYPE 28 24 35
'RP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S984.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RP1L1 MUTATED 14 2 8
RP1L1 WILD-TYPE 59 21 31
'RP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S985.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RP1L1 MUTATED 17 3 4
RP1L1 WILD-TYPE 60 23 28
'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Chi-square test), Q value = 1

Table S986.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RP1L1 MUTATED 12 3 8 7 2
RP1L1 WILD-TYPE 46 34 21 27 11
'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S987.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RP1L1 MUTATED 11 9 12
RP1L1 WILD-TYPE 41 54 44
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S988.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RP1L1 MUTATED 9 16 5
RP1L1 WILD-TYPE 50 64 24
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S989.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RP1L1 MUTATED 2 20 8
RP1L1 WILD-TYPE 18 71 49
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S990.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RP1L1 MUTATED 12 7 4
RP1L1 WILD-TYPE 34 28 20
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S991.  Gene #94: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RP1L1 MUTATED 0 12 11
RP1L1 WILD-TYPE 11 34 37
'DEFB112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S992.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DEFB112 MUTATED 2 1 1
DEFB112 WILD-TYPE 65 71 32
'DEFB112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S993.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
DEFB112 MUTATED 2 0 1
DEFB112 WILD-TYPE 71 23 38
'DEFB112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S994.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
DEFB112 MUTATED 2 0 1
DEFB112 WILD-TYPE 75 26 31
'DEFB112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Chi-square test), Q value = 1

Table S995.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DEFB112 MUTATED 2 0 0 2 0
DEFB112 WILD-TYPE 56 37 29 32 13
'DEFB112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S996.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DEFB112 MUTATED 2 0 2
DEFB112 WILD-TYPE 50 63 54
'DEFB112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S997.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DEFB112 MUTATED 0 3 0
DEFB112 WILD-TYPE 59 77 29
'DEFB112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S998.  Gene #95: 'DEFB112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DEFB112 MUTATED 0 3 0
DEFB112 WILD-TYPE 20 88 57
'ARID2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S999.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
ARID2 MUTATED 0 1 3 0
ARID2 WILD-TYPE 5 8 9 6
'ARID2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1000.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
ARID2 MUTATED 0 3 1
ARID2 WILD-TYPE 7 10 11
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1001.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ARID2 MUTATED 2 7 3
ARID2 WILD-TYPE 65 65 30
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1002.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ARID2 MUTATED 2 2 2
ARID2 WILD-TYPE 32 31 41
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S1003.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ARID2 MUTATED 4 5 2
ARID2 WILD-TYPE 69 18 37
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1004.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ARID2 MUTATED 4 5 2
ARID2 WILD-TYPE 73 21 30
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Chi-square test), Q value = 1

Table S1005.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ARID2 MUTATED 1 4 2 3 2
ARID2 WILD-TYPE 57 33 27 31 11
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1006.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ARID2 MUTATED 2 6 4
ARID2 WILD-TYPE 50 57 52
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1007.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ARID2 MUTATED 6 5 1
ARID2 WILD-TYPE 53 75 28
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1008.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ARID2 MUTATED 2 5 5
ARID2 WILD-TYPE 18 86 52
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1009.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ARID2 MUTATED 2 2 2
ARID2 WILD-TYPE 44 33 22
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1010.  Gene #96: 'ARID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ARID2 MUTATED 1 3 2
ARID2 WILD-TYPE 10 43 46
'ANKRD44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1011.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ANKRD44 MUTATED 3 5 1
ANKRD44 WILD-TYPE 64 67 32
'ANKRD44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1012.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ANKRD44 MUTATED 3 4 1
ANKRD44 WILD-TYPE 31 29 42
'ANKRD44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1013.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ANKRD44 MUTATED 4 0 1
ANKRD44 WILD-TYPE 69 23 38
'ANKRD44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1014.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ANKRD44 MUTATED 2 1 2
ANKRD44 WILD-TYPE 75 25 30
'ANKRD44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.934 (Chi-square test), Q value = 1

Table S1015.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ANKRD44 MUTATED 3 1 1 2 1
ANKRD44 WILD-TYPE 55 36 28 32 12
'ANKRD44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1016.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ANKRD44 MUTATED 3 3 2
ANKRD44 WILD-TYPE 49 60 54
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1017.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ANKRD44 MUTATED 3 5 1
ANKRD44 WILD-TYPE 56 75 28
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1018.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ANKRD44 MUTATED 0 6 3
ANKRD44 WILD-TYPE 20 85 54
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1019.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ANKRD44 MUTATED 4 2 2
ANKRD44 WILD-TYPE 42 33 22
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1020.  Gene #97: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ANKRD44 MUTATED 0 4 4
ANKRD44 WILD-TYPE 11 42 44
'OR4C16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1021.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR4C16 MUTATED 3 9 2
OR4C16 WILD-TYPE 64 63 31
'OR4C16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1022.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR4C16 MUTATED 2 3 7
OR4C16 WILD-TYPE 32 30 36
'OR4C16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1023.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR4C16 MUTATED 7 0 5
OR4C16 WILD-TYPE 66 23 34
'OR4C16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1024.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR4C16 MUTATED 8 1 3
OR4C16 WILD-TYPE 69 25 29
'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Chi-square test), Q value = 1

Table S1025.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR4C16 MUTATED 8 0 3 3 0
OR4C16 WILD-TYPE 50 37 26 31 13
'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1026.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR4C16 MUTATED 6 3 5
OR4C16 WILD-TYPE 46 60 51
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1027.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR4C16 MUTATED 3 9 2
OR4C16 WILD-TYPE 56 71 27
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1028.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR4C16 MUTATED 1 9 4
OR4C16 WILD-TYPE 19 82 53
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1029.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR4C16 MUTATED 3 7 1
OR4C16 WILD-TYPE 43 28 23
'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1030.  Gene #98: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR4C16 MUTATED 0 7 4
OR4C16 WILD-TYPE 11 39 44
'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S1031.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
EPS8L3 MUTATED 3 1 0
EPS8L3 WILD-TYPE 64 71 33
'EPS8L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1032.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
EPS8L3 MUTATED 2 0 1
EPS8L3 WILD-TYPE 71 23 38
'EPS8L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1033.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
EPS8L3 MUTATED 3 0 0
EPS8L3 WILD-TYPE 74 26 32
'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Chi-square test), Q value = 1

Table S1034.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
EPS8L3 MUTATED 1 0 1 1 1
EPS8L3 WILD-TYPE 57 37 28 33 12
'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1035.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
EPS8L3 MUTATED 1 1 2
EPS8L3 WILD-TYPE 51 62 54
'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1036.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
EPS8L3 MUTATED 0 4 0
EPS8L3 WILD-TYPE 59 76 29
'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1037.  Gene #99: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
EPS8L3 MUTATED 0 4 0
EPS8L3 WILD-TYPE 20 87 57
'GPR158 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S1038.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GPR158 MUTATED 9 3 5
GPR158 WILD-TYPE 58 69 28
'GPR158 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1039.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GPR158 MUTATED 2 6 2
GPR158 WILD-TYPE 32 27 41
'GPR158 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1040.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GPR158 MUTATED 6 1 5
GPR158 WILD-TYPE 67 22 34
'GPR158 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1041.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GPR158 MUTATED 8 1 3
GPR158 WILD-TYPE 69 25 29
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0394 (Chi-square test), Q value = 1

Table S1042.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GPR158 MUTATED 11 0 3 2 1
GPR158 WILD-TYPE 47 37 26 32 12

Figure S81.  Get High-res Image Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 1

Table S1043.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GPR158 MUTATED 11 1 5
GPR158 WILD-TYPE 41 62 51

Figure S82.  Get High-res Image Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 1

Table S1044.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GPR158 MUTATED 2 13 2
GPR158 WILD-TYPE 57 67 27

Figure S83.  Get High-res Image Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 1

Table S1045.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GPR158 MUTATED 0 15 2
GPR158 WILD-TYPE 20 76 55

Figure S84.  Get High-res Image Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1046.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GPR158 MUTATED 3 5 1
GPR158 WILD-TYPE 43 30 23
'GPR158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1047.  Gene #100: 'GPR158 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GPR158 MUTATED 0 7 2
GPR158 WILD-TYPE 11 39 46
'SPEG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1048.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
SPEG MUTATED 1 1 0 1
SPEG WILD-TYPE 4 8 12 5
'SPEG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1049.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
SPEG MUTATED 1 1 1
SPEG WILD-TYPE 6 12 11
'SPEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1050.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SPEG MUTATED 6 9 1
SPEG WILD-TYPE 61 63 32
'SPEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1051.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SPEG MUTATED 1 5 5
SPEG WILD-TYPE 33 28 38
'SPEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1052.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SPEG MUTATED 7 3 2
SPEG WILD-TYPE 66 20 37
'SPEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S1053.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SPEG MUTATED 9 3 0
SPEG WILD-TYPE 68 23 32
'SPEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Chi-square test), Q value = 1

Table S1054.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SPEG MUTATED 9 3 2 1 1
SPEG WILD-TYPE 49 34 27 33 12
'SPEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1055.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SPEG MUTATED 5 5 6
SPEG WILD-TYPE 47 58 50
'SPEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1056.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SPEG MUTATED 5 9 2
SPEG WILD-TYPE 54 71 27
'SPEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1057.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SPEG MUTATED 1 12 3
SPEG WILD-TYPE 19 79 54
'SPEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1058.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SPEG MUTATED 4 5 1
SPEG WILD-TYPE 42 30 23
'SPEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1059.  Gene #101: 'SPEG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SPEG MUTATED 0 7 3
SPEG WILD-TYPE 11 39 45
'TARS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1060.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
TARS2 MUTATED 0 1 1 1
TARS2 WILD-TYPE 5 8 11 5
'TARS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1061.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
TARS2 MUTATED 1 1 1
TARS2 WILD-TYPE 6 12 11
'TARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1062.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TARS2 MUTATED 3 2 3
TARS2 WILD-TYPE 64 70 30
'TARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S1063.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TARS2 MUTATED 1 4 0
TARS2 WILD-TYPE 33 29 43

Figure S85.  Get High-res Image Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1064.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TARS2 MUTATED 2 0 4
TARS2 WILD-TYPE 71 23 35
'TARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1065.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TARS2 MUTATED 3 0 3
TARS2 WILD-TYPE 74 26 29
'TARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Chi-square test), Q value = 1

Table S1066.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TARS2 MUTATED 3 0 1 3 1
TARS2 WILD-TYPE 55 37 28 31 12
'TARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1067.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TARS2 MUTATED 4 1 3
TARS2 WILD-TYPE 48 62 53
'TARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1068.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TARS2 MUTATED 3 3 2
TARS2 WILD-TYPE 56 77 27
'TARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1069.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TARS2 MUTATED 0 5 3
TARS2 WILD-TYPE 20 86 54
'TARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1070.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TARS2 MUTATED 1 2 1
TARS2 WILD-TYPE 45 33 23
'TARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1071.  Gene #102: 'TARS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TARS2 MUTATED 1 2 1
TARS2 WILD-TYPE 10 44 47
'OR2T27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1072.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR2T27 MUTATED 1 4 3
OR2T27 WILD-TYPE 66 68 30
'OR2T27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1073.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR2T27 MUTATED 2 2 2
OR2T27 WILD-TYPE 32 31 41
'OR2T27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1074.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR2T27 MUTATED 2 1 3
OR2T27 WILD-TYPE 71 22 36
'OR2T27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1075.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR2T27 MUTATED 2 1 3
OR2T27 WILD-TYPE 75 25 29
'OR2T27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Chi-square test), Q value = 1

Table S1076.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR2T27 MUTATED 2 2 1 3 0
OR2T27 WILD-TYPE 56 35 28 31 13
'OR2T27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1077.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR2T27 MUTATED 2 2 4
OR2T27 WILD-TYPE 50 61 52
'OR2T27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S1078.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR2T27 MUTATED 1 4 3
OR2T27 WILD-TYPE 58 76 26
'OR2T27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1079.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR2T27 MUTATED 1 6 1
OR2T27 WILD-TYPE 19 85 56
'OR2T27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1080.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR2T27 MUTATED 1 3 2
OR2T27 WILD-TYPE 45 32 22
'OR2T27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1081.  Gene #103: 'OR2T27 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR2T27 MUTATED 1 4 1
OR2T27 WILD-TYPE 10 42 47
'GPR174 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1082.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GPR174 MUTATED 3 2 1
GPR174 WILD-TYPE 64 70 32
'GPR174 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1083.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GPR174 MUTATED 2 2 1
GPR174 WILD-TYPE 32 31 42
'GPR174 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1084.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GPR174 MUTATED 4 1 1
GPR174 WILD-TYPE 69 22 38
'GPR174 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1085.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GPR174 MUTATED 5 1 0
GPR174 WILD-TYPE 72 25 32
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Chi-square test), Q value = 1

Table S1086.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GPR174 MUTATED 2 2 1 1 0
GPR174 WILD-TYPE 56 35 28 33 13
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1087.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GPR174 MUTATED 1 2 3
GPR174 WILD-TYPE 51 61 53
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1088.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GPR174 MUTATED 1 3 2
GPR174 WILD-TYPE 58 77 27
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1089.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GPR174 MUTATED 2 3 1
GPR174 WILD-TYPE 18 88 56
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1090.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GPR174 MUTATED 2 2 1
GPR174 WILD-TYPE 44 33 23
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1091.  Gene #104: 'GPR174 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GPR174 MUTATED 0 3 2
GPR174 WILD-TYPE 11 43 46
'KIF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1092.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KIF9 MUTATED 3 3 1
KIF9 WILD-TYPE 64 69 32
'KIF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1093.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KIF9 MUTATED 1 2 1
KIF9 WILD-TYPE 33 31 42
'KIF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1094.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KIF9 MUTATED 2 2 3
KIF9 WILD-TYPE 71 21 36
'KIF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 1

Table S1095.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KIF9 MUTATED 1 3 3
KIF9 WILD-TYPE 76 23 29

Figure S86.  Get High-res Image Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0961 (Chi-square test), Q value = 1

Table S1096.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KIF9 MUTATED 1 2 0 4 0
KIF9 WILD-TYPE 57 35 29 30 13
'KIF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1097.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KIF9 MUTATED 1 3 3
KIF9 WILD-TYPE 51 60 53
'KIF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1098.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KIF9 MUTATED 3 4 0
KIF9 WILD-TYPE 56 76 29
'KIF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S1099.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KIF9 MUTATED 2 5 0
KIF9 WILD-TYPE 18 86 57
'KIF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1100.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KIF9 MUTATED 2 1 1
KIF9 WILD-TYPE 44 34 23
'KIF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1101.  Gene #105: 'KIF9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KIF9 MUTATED 1 1 2
KIF9 WILD-TYPE 10 45 46
'C1ORF173 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1102.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
C1ORF173 MUTATED 1 2 1 0
C1ORF173 WILD-TYPE 4 7 11 6
'C1ORF173 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1103.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
C1ORF173 MUTATED 0 2 2
C1ORF173 WILD-TYPE 7 11 10
'C1ORF173 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1104.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C1ORF173 MUTATED 9 10 6
C1ORF173 WILD-TYPE 58 62 27
'C1ORF173 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1105.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
C1ORF173 MUTATED 5 8 3
C1ORF173 WILD-TYPE 29 25 40
'C1ORF173 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1106.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
C1ORF173 MUTATED 10 1 8
C1ORF173 WILD-TYPE 63 22 31
'C1ORF173 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1107.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
C1ORF173 MUTATED 11 2 6
C1ORF173 WILD-TYPE 66 24 26
'C1ORF173 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Chi-square test), Q value = 1

Table S1108.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C1ORF173 MUTATED 10 5 3 5 2
C1ORF173 WILD-TYPE 48 32 26 29 11
'C1ORF173 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1109.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C1ORF173 MUTATED 9 8 8
C1ORF173 WILD-TYPE 43 55 48
'C1ORF173 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S1110.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C1ORF173 MUTATED 5 17 3
C1ORF173 WILD-TYPE 54 63 26
'C1ORF173 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S1111.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C1ORF173 MUTATED 0 20 5
C1ORF173 WILD-TYPE 20 71 52

Figure S87.  Get High-res Image Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C1ORF173 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1112.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
C1ORF173 MUTATED 7 7 1
C1ORF173 WILD-TYPE 39 28 23
'C1ORF173 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1113.  Gene #106: 'C1ORF173 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
C1ORF173 MUTATED 0 8 7
C1ORF173 WILD-TYPE 11 38 41
'CYP1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1114.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CYP1A1 MUTATED 2 1 1
CYP1A1 WILD-TYPE 65 71 32
'CYP1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1115.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CYP1A1 MUTATED 2 0 1
CYP1A1 WILD-TYPE 71 23 38
'CYP1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1116.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CYP1A1 MUTATED 2 0 1
CYP1A1 WILD-TYPE 75 26 31
'CYP1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Chi-square test), Q value = 1

Table S1117.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CYP1A1 MUTATED 1 0 0 2 1
CYP1A1 WILD-TYPE 57 37 29 32 12
'CYP1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1118.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CYP1A1 MUTATED 1 1 2
CYP1A1 WILD-TYPE 51 62 54
'CYP1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1119.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CYP1A1 MUTATED 0 3 0
CYP1A1 WILD-TYPE 59 77 29
'CYP1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1120.  Gene #107: 'CYP1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CYP1A1 MUTATED 0 3 0
CYP1A1 WILD-TYPE 20 88 57
'ENAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1121.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ENAH MUTATED 2 1 1
ENAH WILD-TYPE 65 71 32
'ENAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S1122.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ENAH MUTATED 1 3 0
ENAH WILD-TYPE 33 30 43
'ENAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1123.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ENAH MUTATED 4 0 0
ENAH WILD-TYPE 69 23 39
'ENAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1124.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ENAH MUTATED 2 1 1
ENAH WILD-TYPE 75 25 31
'ENAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Chi-square test), Q value = 1

Table S1125.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ENAH MUTATED 2 0 0 2 0
ENAH WILD-TYPE 56 37 29 32 13
'ENAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1126.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ENAH MUTATED 2 1 1
ENAH WILD-TYPE 50 62 55
'ENAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1127.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ENAH MUTATED 1 3 0
ENAH WILD-TYPE 58 77 29
'ENAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1128.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ENAH MUTATED 0 3 1
ENAH WILD-TYPE 20 88 56
'ENAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1129.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ENAH MUTATED 2 0 1
ENAH WILD-TYPE 44 35 23
'ENAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1130.  Gene #108: 'ENAH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ENAH MUTATED 1 0 2
ENAH WILD-TYPE 10 46 46
'SH2D2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S1131.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SH2D2A MUTATED 0 3 3
SH2D2A WILD-TYPE 67 69 30

Figure S88.  Get High-res Image Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SH2D2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1132.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SH2D2A MUTATED 1 1 2
SH2D2A WILD-TYPE 33 32 41
'SH2D2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1133.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SH2D2A MUTATED 2 2 1
SH2D2A WILD-TYPE 71 21 38
'SH2D2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 1

Table S1134.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SH2D2A MUTATED 1 3 1
SH2D2A WILD-TYPE 76 23 31

Figure S89.  Get High-res Image Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SH2D2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Chi-square test), Q value = 1

Table S1135.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SH2D2A MUTATED 0 1 0 3 2
SH2D2A WILD-TYPE 58 36 29 31 11

Figure S90.  Get High-res Image Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SH2D2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1136.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SH2D2A MUTATED 0 4 2
SH2D2A WILD-TYPE 52 59 54
'SH2D2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1137.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SH2D2A MUTATED 3 2 1
SH2D2A WILD-TYPE 56 78 28
'SH2D2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1138.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SH2D2A MUTATED 0 3 3
SH2D2A WILD-TYPE 20 88 54
'SH2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1139.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SH2D2A MUTATED 4 0 0
SH2D2A WILD-TYPE 42 35 24
'SH2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1140.  Gene #109: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SH2D2A MUTATED 0 0 4
SH2D2A WILD-TYPE 11 46 44
'CD5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1141.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CD5L MUTATED 6 4 2
CD5L WILD-TYPE 61 68 31
'CD5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 1

Table S1142.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CD5L MUTATED 2 7 1
CD5L WILD-TYPE 32 26 42

Figure S91.  Get High-res Image Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CD5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S1143.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CD5L MUTATED 8 0 3
CD5L WILD-TYPE 65 23 36
'CD5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1144.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CD5L MUTATED 8 1 2
CD5L WILD-TYPE 69 25 30
'CD5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Chi-square test), Q value = 1

Table S1145.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CD5L MUTATED 6 1 1 3 1
CD5L WILD-TYPE 52 36 28 31 12
'CD5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1146.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CD5L MUTATED 4 4 4
CD5L WILD-TYPE 48 59 52
'CD5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CD5L MUTATED 4 6 2
CD5L WILD-TYPE 55 74 27
'CD5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1148.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CD5L MUTATED 0 8 4
CD5L WILD-TYPE 20 83 53
'CD5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1149.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CD5L MUTATED 4 3 2
CD5L WILD-TYPE 42 32 22
'CD5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1150.  Gene #110: 'CD5L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CD5L MUTATED 0 4 5
CD5L WILD-TYPE 11 42 43
'ANKRD56 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1151.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ANKRD56 MUTATED 4 6 1
ANKRD56 WILD-TYPE 63 66 32
'ANKRD56 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1152.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ANKRD56 MUTATED 3 2 3
ANKRD56 WILD-TYPE 31 31 40
'ANKRD56 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1153.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ANKRD56 MUTATED 4 1 1
ANKRD56 WILD-TYPE 69 22 38
'ANKRD56 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1154.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ANKRD56 MUTATED 3 2 1
ANKRD56 WILD-TYPE 74 24 31
'ANKRD56 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Chi-square test), Q value = 1

Table S1155.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ANKRD56 MUTATED 3 1 3 3 1
ANKRD56 WILD-TYPE 55 36 26 31 12
'ANKRD56 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1156.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ANKRD56 MUTATED 2 3 6
ANKRD56 WILD-TYPE 50 60 50
'ANKRD56 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1157.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ANKRD56 MUTATED 1 8 2
ANKRD56 WILD-TYPE 58 72 27
'ANKRD56 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1158.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ANKRD56 MUTATED 0 9 2
ANKRD56 WILD-TYPE 20 82 55
'ANKRD56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1159.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ANKRD56 MUTATED 3 3 2
ANKRD56 WILD-TYPE 43 32 22
'ANKRD56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1160.  Gene #111: 'ANKRD56 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ANKRD56 MUTATED 1 4 3
ANKRD56 WILD-TYPE 10 42 45
'HOXA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1161.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
HOXA5 MUTATED 3 1 2
HOXA5 WILD-TYPE 64 71 31
'HOXA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1162.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
HOXA5 MUTATED 2 1 0
HOXA5 WILD-TYPE 32 32 43
'HOXA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1163.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
HOXA5 MUTATED 3 0 2
HOXA5 WILD-TYPE 70 23 37
'HOXA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1164.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
HOXA5 MUTATED 2 0 3
HOXA5 WILD-TYPE 75 26 29
'HOXA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Chi-square test), Q value = 1

Table S1165.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
HOXA5 MUTATED 2 0 1 2 0
HOXA5 WILD-TYPE 56 37 28 32 13
'HOXA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1166.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
HOXA5 MUTATED 3 0 2
HOXA5 WILD-TYPE 49 63 54
'HOXA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 1

Table S1167.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
HOXA5 MUTATED 0 2 4
HOXA5 WILD-TYPE 59 78 25

Figure S92.  Get High-res Image Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HOXA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1168.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
HOXA5 MUTATED 0 6 0
HOXA5 WILD-TYPE 20 85 57
'HOXA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S1169.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
HOXA5 MUTATED 0 1 2
HOXA5 WILD-TYPE 46 34 22
'HOXA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S1170.  Gene #112: 'HOXA5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
HOXA5 MUTATED 1 2 0
HOXA5 WILD-TYPE 10 44 48
'FERD3L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1171.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FERD3L MUTATED 3 3 1
FERD3L WILD-TYPE 64 69 32
'FERD3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1172.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FERD3L MUTATED 1 1 3
FERD3L WILD-TYPE 33 32 40
'FERD3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1173.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FERD3L MUTATED 4 1 1
FERD3L WILD-TYPE 69 22 38
'FERD3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1174.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FERD3L MUTATED 5 1 0
FERD3L WILD-TYPE 72 25 32
'FERD3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Chi-square test), Q value = 1

Table S1175.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FERD3L MUTATED 3 1 1 1 1
FERD3L WILD-TYPE 55 36 28 33 12
'FERD3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1176.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FERD3L MUTATED 2 3 2
FERD3L WILD-TYPE 50 60 54
'FERD3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 1

Table S1177.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FERD3L MUTATED 3 1 3
FERD3L WILD-TYPE 56 79 26
'FERD3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1178.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FERD3L MUTATED 2 4 1
FERD3L WILD-TYPE 18 87 56
'FERD3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1179.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FERD3L MUTATED 2 1 2
FERD3L WILD-TYPE 44 34 22
'FERD3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1180.  Gene #113: 'FERD3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FERD3L MUTATED 0 2 3
FERD3L WILD-TYPE 11 44 45
'SIRPB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1181.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SIRPB1 MUTATED 3 2 1
SIRPB1 WILD-TYPE 64 70 32
'SIRPB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1182.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SIRPB1 MUTATED 0 3 2
SIRPB1 WILD-TYPE 34 30 41
'SIRPB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1183.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SIRPB1 MUTATED 3 1 2
SIRPB1 WILD-TYPE 70 22 37
'SIRPB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1184.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SIRPB1 MUTATED 3 2 1
SIRPB1 WILD-TYPE 74 24 31
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Chi-square test), Q value = 1

Table S1185.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SIRPB1 MUTATED 2 0 1 2 1
SIRPB1 WILD-TYPE 56 37 28 32 12
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1186.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SIRPB1 MUTATED 2 2 2
SIRPB1 WILD-TYPE 50 61 54
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1187.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SIRPB1 MUTATED 0 5 1
SIRPB1 WILD-TYPE 59 75 28
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1188.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SIRPB1 MUTATED 0 5 1
SIRPB1 WILD-TYPE 20 86 56
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1189.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SIRPB1 MUTATED 3 2 0
SIRPB1 WILD-TYPE 43 33 24
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1190.  Gene #114: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SIRPB1 MUTATED 0 3 2
SIRPB1 WILD-TYPE 11 43 46
'COL3A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1191.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
COL3A1 MUTATED 0 2 3 1
COL3A1 WILD-TYPE 5 7 9 5
'COL3A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1192.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
COL3A1 MUTATED 1 4 1
COL3A1 WILD-TYPE 6 9 11
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1193.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL3A1 MUTATED 10 8 4
COL3A1 WILD-TYPE 57 64 29
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1194.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL3A1 MUTATED 1 6 7
COL3A1 WILD-TYPE 33 27 36
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1195.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL3A1 MUTATED 9 2 7
COL3A1 WILD-TYPE 64 21 32
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1196.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL3A1 MUTATED 11 2 5
COL3A1 WILD-TYPE 66 24 27
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.928 (Chi-square test), Q value = 1

Table S1197.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL3A1 MUTATED 9 4 4 4 1
COL3A1 WILD-TYPE 49 33 25 30 12
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S1198.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL3A1 MUTATED 9 5 8
COL3A1 WILD-TYPE 43 58 48
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1199.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL3A1 MUTATED 5 12 5
COL3A1 WILD-TYPE 54 68 24
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1200.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL3A1 MUTATED 2 16 4
COL3A1 WILD-TYPE 18 75 53
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1201.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL3A1 MUTATED 5 4 3
COL3A1 WILD-TYPE 41 31 21
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1202.  Gene #115: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL3A1 MUTATED 2 6 4
COL3A1 WILD-TYPE 9 40 44
'GTF2I MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1203.  Gene #116: 'GTF2I MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GTF2I MUTATED 1 2 0
GTF2I WILD-TYPE 66 70 33
'GTF2I MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.875 (Chi-square test), Q value = 1

Table S1204.  Gene #116: 'GTF2I MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GTF2I MUTATED 1 1 0 1 0
GTF2I WILD-TYPE 57 36 29 33 13
'GTF2I MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1205.  Gene #116: 'GTF2I MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GTF2I MUTATED 1 2 0
GTF2I WILD-TYPE 51 61 56
'GTF2I MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1206.  Gene #116: 'GTF2I MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GTF2I MUTATED 1 2 0
GTF2I WILD-TYPE 58 78 29
'GTF2I MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1207.  Gene #116: 'GTF2I MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GTF2I MUTATED 1 2 0
GTF2I WILD-TYPE 19 89 57
'RUFY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1208.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
RUFY2 MUTATED 3 2 1
RUFY2 WILD-TYPE 64 70 32
'RUFY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1209.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
RUFY2 MUTATED 1 1 3
RUFY2 WILD-TYPE 33 32 40
'RUFY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1210.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
RUFY2 MUTATED 2 1 2
RUFY2 WILD-TYPE 71 22 37
'RUFY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S1211.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
RUFY2 MUTATED 1 1 3
RUFY2 WILD-TYPE 76 25 29
'RUFY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Chi-square test), Q value = 1

Table S1212.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
RUFY2 MUTATED 2 0 2 2 0
RUFY2 WILD-TYPE 56 37 27 32 13
'RUFY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1213.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
RUFY2 MUTATED 2 1 3
RUFY2 WILD-TYPE 50 62 53
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1214.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
RUFY2 MUTATED 1 3 1
RUFY2 WILD-TYPE 58 77 28
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1215.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
RUFY2 MUTATED 0 4 1
RUFY2 WILD-TYPE 20 87 56
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S1216.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
RUFY2 MUTATED 2 0 2
RUFY2 WILD-TYPE 44 35 22
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1217.  Gene #117: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
RUFY2 MUTATED 0 2 2
RUFY2 WILD-TYPE 11 44 46
'VPS13C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 1

Table S1218.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
VPS13C MUTATED 1 2 0 3
VPS13C WILD-TYPE 4 7 12 3

Figure S93.  Get High-res Image Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VPS13C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1219.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
VPS13C MUTATED 3 1 2
VPS13C WILD-TYPE 4 12 10
'VPS13C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1220.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
VPS13C MUTATED 9 7 3
VPS13C WILD-TYPE 58 65 30
'VPS13C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1221.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
VPS13C MUTATED 1 4 5
VPS13C WILD-TYPE 33 29 38
'VPS13C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S1222.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
VPS13C MUTATED 11 0 3
VPS13C WILD-TYPE 62 23 36
'VPS13C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S1223.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
VPS13C MUTATED 12 1 1
VPS13C WILD-TYPE 65 25 31
'VPS13C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Chi-square test), Q value = 1

Table S1224.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
VPS13C MUTATED 7 2 2 6 2
VPS13C WILD-TYPE 51 35 27 28 11
'VPS13C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1225.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
VPS13C MUTATED 6 6 7
VPS13C WILD-TYPE 46 57 49
'VPS13C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1226.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
VPS13C MUTATED 4 12 2
VPS13C WILD-TYPE 55 68 27
'VPS13C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1227.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
VPS13C MUTATED 1 13 4
VPS13C WILD-TYPE 19 78 53
'VPS13C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1228.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
VPS13C MUTATED 5 3 1
VPS13C WILD-TYPE 41 32 23
'VPS13C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1229.  Gene #118: 'VPS13C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
VPS13C MUTATED 0 4 5
VPS13C WILD-TYPE 11 42 43
'TBX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1230.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TBX15 MUTATED 7 3 1
TBX15 WILD-TYPE 60 69 32
'TBX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1231.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TBX15 MUTATED 2 4 1
TBX15 WILD-TYPE 32 29 42
'TBX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1232.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TBX15 MUTATED 4 0 2
TBX15 WILD-TYPE 69 23 37
'TBX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1233.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TBX15 MUTATED 4 1 1
TBX15 WILD-TYPE 73 25 31
'TBX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Chi-square test), Q value = 1

Table S1234.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TBX15 MUTATED 5 2 1 3 0
TBX15 WILD-TYPE 53 35 28 31 13
'TBX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1235.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TBX15 MUTATED 5 2 4
TBX15 WILD-TYPE 47 61 52
'TBX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1236.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TBX15 MUTATED 2 8 1
TBX15 WILD-TYPE 57 72 28
'TBX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 1

Table S1237.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TBX15 MUTATED 0 10 1
TBX15 WILD-TYPE 20 81 56
'TBX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1238.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TBX15 MUTATED 2 3 1
TBX15 WILD-TYPE 44 32 23
'TBX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1239.  Gene #119: 'TBX15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TBX15 MUTATED 0 5 1
TBX15 WILD-TYPE 11 41 47
'XIRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1240.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
XIRP2 MUTATED 0 2 2 3
XIRP2 WILD-TYPE 5 7 10 3
'XIRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1241.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
XIRP2 MUTATED 3 2 2
XIRP2 WILD-TYPE 4 11 10
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1242.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
XIRP2 MUTATED 17 21 9
XIRP2 WILD-TYPE 50 51 24
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1243.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
XIRP2 MUTATED 11 12 12
XIRP2 WILD-TYPE 23 21 31
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1244.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
XIRP2 MUTATED 21 3 10
XIRP2 WILD-TYPE 52 20 29
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1245.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
XIRP2 MUTATED 23 5 6
XIRP2 WILD-TYPE 54 21 26
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.054 (Chi-square test), Q value = 1

Table S1246.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
XIRP2 MUTATED 20 4 6 13 4
XIRP2 WILD-TYPE 38 33 23 21 9
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 1

Table S1247.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
XIRP2 MUTATED 17 11 19
XIRP2 WILD-TYPE 35 52 37
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1248.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
XIRP2 MUTATED 14 25 7
XIRP2 WILD-TYPE 45 55 22
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1249.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
XIRP2 MUTATED 3 29 14
XIRP2 WILD-TYPE 17 62 43
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1250.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
XIRP2 MUTATED 14 11 7
XIRP2 WILD-TYPE 32 24 17
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1251.  Gene #120: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
XIRP2 MUTATED 2 16 14
XIRP2 WILD-TYPE 9 30 34
'HOXA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1252.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
HOXA3 MUTATED 4 2 0
HOXA3 WILD-TYPE 63 70 33
'HOXA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1253.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
HOXA3 MUTATED 1 3 1
HOXA3 WILD-TYPE 33 30 42
'HOXA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1254.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
HOXA3 MUTATED 4 0 1
HOXA3 WILD-TYPE 69 23 38
'HOXA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1255.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
HOXA3 MUTATED 3 1 1
HOXA3 WILD-TYPE 74 25 31
'HOXA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Chi-square test), Q value = 1

Table S1256.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
HOXA3 MUTATED 4 0 1 1 0
HOXA3 WILD-TYPE 54 37 28 33 13
'HOXA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1257.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
HOXA3 MUTATED 3 2 1
HOXA3 WILD-TYPE 49 61 55
'HOXA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1258.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
HOXA3 MUTATED 1 4 1
HOXA3 WILD-TYPE 58 76 28
'HOXA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1259.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
HOXA3 MUTATED 0 5 1
HOXA3 WILD-TYPE 20 86 56
'HOXA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1260.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
HOXA3 MUTATED 1 4 0
HOXA3 WILD-TYPE 45 31 24
'HOXA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1261.  Gene #121: 'HOXA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
HOXA3 MUTATED 0 4 1
HOXA3 WILD-TYPE 11 42 47
'KDR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1262.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
KDR MUTATED 0 0 3 0
KDR WILD-TYPE 5 9 9 6
'KDR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1263.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
KDR MUTATED 0 3 0
KDR WILD-TYPE 7 10 12
'KDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S1264.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KDR MUTATED 5 13 2
KDR WILD-TYPE 62 59 31
'KDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1265.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KDR MUTATED 6 4 3
KDR WILD-TYPE 28 29 40
'KDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1266.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KDR MUTATED 8 2 2
KDR WILD-TYPE 65 21 37
'KDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1267.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KDR MUTATED 7 4 1
KDR WILD-TYPE 70 22 31
'KDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Chi-square test), Q value = 1

Table S1268.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KDR MUTATED 10 5 2 2 1
KDR WILD-TYPE 48 32 27 32 12
'KDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1269.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KDR MUTATED 6 9 5
KDR WILD-TYPE 46 54 51
'KDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1270.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KDR MUTATED 6 10 2
KDR WILD-TYPE 53 70 27
'KDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1271.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KDR MUTATED 1 13 4
KDR WILD-TYPE 19 78 53
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1272.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KDR MUTATED 4 7 1
KDR WILD-TYPE 42 28 23
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S1273.  Gene #122: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KDR MUTATED 0 9 3
KDR WILD-TYPE 11 37 45
'OR56A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1274.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR56A4 MUTATED 3 2 1
OR56A4 WILD-TYPE 64 70 32
'OR56A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1275.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR56A4 MUTATED 3 0 1
OR56A4 WILD-TYPE 70 23 38
'OR56A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1276.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR56A4 MUTATED 3 0 1
OR56A4 WILD-TYPE 74 26 31
'OR56A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Chi-square test), Q value = 1

Table S1277.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR56A4 MUTATED 3 1 0 2 0
OR56A4 WILD-TYPE 55 36 29 32 13
'OR56A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1278.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR56A4 MUTATED 3 0 3
OR56A4 WILD-TYPE 49 63 53
'OR56A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1279.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR56A4 MUTATED 1 3 2
OR56A4 WILD-TYPE 58 77 27
'OR56A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1280.  Gene #123: 'OR56A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR56A4 MUTATED 0 6 0
OR56A4 WILD-TYPE 20 85 57
'HCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S1281.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
HCK MUTATED 3 0 3
HCK WILD-TYPE 64 72 30

Figure S94.  Get High-res Image Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1282.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
HCK MUTATED 2 0 1
HCK WILD-TYPE 32 33 42
'HCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1283.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
HCK MUTATED 4 0 1
HCK WILD-TYPE 69 23 38
'HCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1284.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
HCK MUTATED 2 0 3
HCK WILD-TYPE 75 26 29
'HCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Chi-square test), Q value = 1

Table S1285.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
HCK MUTATED 2 1 0 2 0
HCK WILD-TYPE 56 36 29 32 13
'HCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1286.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
HCK MUTATED 2 1 2
HCK WILD-TYPE 50 62 54
'HCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1287.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
HCK MUTATED 1 4 1
HCK WILD-TYPE 58 76 28
'HCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1288.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
HCK MUTATED 0 5 1
HCK WILD-TYPE 20 86 56
'HCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1289.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
HCK MUTATED 1 1 1
HCK WILD-TYPE 45 34 23
'HCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1290.  Gene #124: 'HCK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
HCK MUTATED 0 2 1
HCK WILD-TYPE 11 44 47
'SPTA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1291.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
SPTA1 MUTATED 3 5 6 1
SPTA1 WILD-TYPE 2 4 6 5
'SPTA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1292.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
SPTA1 MUTATED 2 6 7
SPTA1 WILD-TYPE 5 7 5
'SPTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 1

Table S1293.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SPTA1 MUTATED 24 14 10
SPTA1 WILD-TYPE 43 58 23
'SPTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 1

Table S1294.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SPTA1 MUTATED 5 16 7
SPTA1 WILD-TYPE 29 17 36

Figure S95.  Get High-res Image Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPTA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1295.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SPTA1 MUTATED 20 6 10
SPTA1 WILD-TYPE 53 17 29
'SPTA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1296.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SPTA1 MUTATED 22 7 7
SPTA1 WILD-TYPE 55 19 25
'SPTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Chi-square test), Q value = 1

Table S1297.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SPTA1 MUTATED 23 9 6 9 1
SPTA1 WILD-TYPE 35 28 23 25 12
'SPTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S1298.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SPTA1 MUTATED 20 12 16
SPTA1 WILD-TYPE 32 51 40
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1299.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SPTA1 MUTATED 13 28 7
SPTA1 WILD-TYPE 46 52 22
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1300.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SPTA1 MUTATED 4 32 12
SPTA1 WILD-TYPE 16 59 45
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1301.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SPTA1 MUTATED 9 11 5
SPTA1 WILD-TYPE 37 24 19
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1302.  Gene #125: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SPTA1 MUTATED 2 15 8
SPTA1 WILD-TYPE 9 31 40
'BRS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S1303.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
BRS3 MUTATED 2 1 4
BRS3 WILD-TYPE 65 71 29

Figure S96.  Get High-res Image Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1304.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
BRS3 MUTATED 3 1 1
BRS3 WILD-TYPE 31 32 42
'BRS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1305.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
BRS3 MUTATED 3 0 1
BRS3 WILD-TYPE 70 23 38
'BRS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1306.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
BRS3 MUTATED 1 1 2
BRS3 WILD-TYPE 76 25 30
'BRS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00673 (Chi-square test), Q value = 1

Table S1307.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
BRS3 MUTATED 0 2 0 5 0
BRS3 WILD-TYPE 58 35 29 29 13

Figure S97.  Get High-res Image Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1308.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
BRS3 MUTATED 1 2 4
BRS3 WILD-TYPE 51 61 52
'BRS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1309.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
BRS3 MUTATED 2 5 0
BRS3 WILD-TYPE 57 75 29
'BRS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1310.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
BRS3 MUTATED 0 6 1
BRS3 WILD-TYPE 20 85 56
'BRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1311.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
BRS3 MUTATED 3 2 0
BRS3 WILD-TYPE 43 33 24
'BRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1312.  Gene #126: 'BRS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
BRS3 MUTATED 0 3 2
BRS3 WILD-TYPE 11 43 46
'LPPR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1313.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
LPPR4 MUTATED 0 2 2 0
LPPR4 WILD-TYPE 5 7 10 6
'LPPR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1314.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
LPPR4 MUTATED 0 3 1
LPPR4 WILD-TYPE 7 10 11
'LPPR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1315.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LPPR4 MUTATED 6 6 2
LPPR4 WILD-TYPE 61 66 31
'LPPR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1316.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
LPPR4 MUTATED 2 5 3
LPPR4 WILD-TYPE 32 28 40
'LPPR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1317.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
LPPR4 MUTATED 8 0 2
LPPR4 WILD-TYPE 65 23 37
'LPPR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1318.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
LPPR4 MUTATED 8 1 1
LPPR4 WILD-TYPE 69 25 31
'LPPR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Chi-square test), Q value = 1

Table S1319.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LPPR4 MUTATED 8 1 3 1 1
LPPR4 WILD-TYPE 50 36 26 33 12
'LPPR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1320.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LPPR4 MUTATED 6 4 4
LPPR4 WILD-TYPE 46 59 52
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1321.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LPPR4 MUTATED 5 6 2
LPPR4 WILD-TYPE 54 74 27
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1322.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LPPR4 MUTATED 1 8 4
LPPR4 WILD-TYPE 19 83 53
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1323.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
LPPR4 MUTATED 4 2 2
LPPR4 WILD-TYPE 42 33 22
'LPPR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1324.  Gene #127: 'LPPR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
LPPR4 MUTATED 0 3 5
LPPR4 WILD-TYPE 11 43 43
'KDM5C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1325.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
KDM5C MUTATED 2 3 3
KDM5C WILD-TYPE 65 69 30
'KDM5C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1326.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
KDM5C MUTATED 1 2 0
KDM5C WILD-TYPE 33 31 43
'KDM5C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1327.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
KDM5C MUTATED 4 1 2
KDM5C WILD-TYPE 69 22 37
'KDM5C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1328.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
KDM5C MUTATED 2 2 3
KDM5C WILD-TYPE 75 24 29
'KDM5C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Chi-square test), Q value = 1

Table S1329.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
KDM5C MUTATED 2 1 0 4 1
KDM5C WILD-TYPE 56 36 29 30 12
'KDM5C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 1

Table S1330.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
KDM5C MUTATED 0 3 5
KDM5C WILD-TYPE 52 60 51
'KDM5C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1331.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
KDM5C MUTATED 2 6 0
KDM5C WILD-TYPE 57 74 29
'KDM5C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1332.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
KDM5C MUTATED 0 7 1
KDM5C WILD-TYPE 20 84 56
'KDM5C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1333.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
KDM5C MUTATED 1 1 1
KDM5C WILD-TYPE 45 34 23
'KDM5C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1334.  Gene #128: 'KDM5C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
KDM5C MUTATED 1 1 1
KDM5C WILD-TYPE 10 45 47
'TRPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1335.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TRPC1 MUTATED 2 5 0
TRPC1 WILD-TYPE 65 67 33
'TRPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S1336.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TRPC1 MUTATED 2 1 3
TRPC1 WILD-TYPE 32 32 40
'TRPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1337.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TRPC1 MUTATED 4 1 0
TRPC1 WILD-TYPE 69 22 39
'TRPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1338.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TRPC1 MUTATED 3 2 0
TRPC1 WILD-TYPE 74 24 32
'TRPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Chi-square test), Q value = 1

Table S1339.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TRPC1 MUTATED 1 1 1 3 1
TRPC1 WILD-TYPE 57 36 28 31 12
'TRPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1340.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TRPC1 MUTATED 0 5 2
TRPC1 WILD-TYPE 52 58 54
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1341.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TRPC1 MUTATED 2 4 1
TRPC1 WILD-TYPE 57 76 28
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1342.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TRPC1 MUTATED 0 5 2
TRPC1 WILD-TYPE 20 86 55
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1343.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TRPC1 MUTATED 3 3 0
TRPC1 WILD-TYPE 43 32 24
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1344.  Gene #129: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TRPC1 MUTATED 0 3 3
TRPC1 WILD-TYPE 11 43 45
'AOAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1345.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
AOAH MUTATED 2 5 1
AOAH WILD-TYPE 65 67 32
'AOAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1346.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
AOAH MUTATED 0 3 3
AOAH WILD-TYPE 34 30 40
'AOAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1347.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
AOAH MUTATED 6 1 0
AOAH WILD-TYPE 67 22 39
'AOAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1348.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
AOAH MUTATED 4 2 1
AOAH WILD-TYPE 73 24 31
'AOAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Chi-square test), Q value = 1

Table S1349.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
AOAH MUTATED 2 2 1 2 1
AOAH WILD-TYPE 56 35 28 32 12
'AOAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1350.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
AOAH MUTATED 2 4 2
AOAH WILD-TYPE 50 59 54
'AOAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1351.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
AOAH MUTATED 3 5 0
AOAH WILD-TYPE 56 75 29
'AOAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1352.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
AOAH MUTATED 0 6 2
AOAH WILD-TYPE 20 85 55
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1353.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
AOAH MUTATED 3 2 1
AOAH WILD-TYPE 43 33 23
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1354.  Gene #130: 'AOAH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
AOAH MUTATED 1 2 3
AOAH WILD-TYPE 10 44 45
'C9ORF64 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S1355.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
C9ORF64 MUTATED 0 3 0 0
C9ORF64 WILD-TYPE 5 6 12 6
'C9ORF64 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1356.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
C9ORF64 MUTATED 0 1 2
C9ORF64 WILD-TYPE 7 12 10
'C9ORF64 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1357.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C9ORF64 MUTATED 2 1 0
C9ORF64 WILD-TYPE 65 71 33
'C9ORF64 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1358.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
C9ORF64 MUTATED 2 0 1
C9ORF64 WILD-TYPE 71 23 38
'C9ORF64 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1359.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
C9ORF64 MUTATED 2 0 1
C9ORF64 WILD-TYPE 75 26 31
'C9ORF64 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Chi-square test), Q value = 1

Table S1360.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C9ORF64 MUTATED 3 0 0 0 0
C9ORF64 WILD-TYPE 55 37 29 34 13
'C9ORF64 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S1361.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C9ORF64 MUTATED 3 0 0
C9ORF64 WILD-TYPE 49 63 56

Figure S98.  Get High-res Image Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF64 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1362.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C9ORF64 MUTATED 0 2 1
C9ORF64 WILD-TYPE 59 78 28
'C9ORF64 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1363.  Gene #131: 'C9ORF64 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C9ORF64 MUTATED 0 3 0
C9ORF64 WILD-TYPE 20 88 57
'ZNF260 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1364.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ZNF260 MUTATED 1 1 2
ZNF260 WILD-TYPE 66 71 31
'ZNF260 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1365.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ZNF260 MUTATED 1 1 2
ZNF260 WILD-TYPE 33 32 41
'ZNF260 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1366.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ZNF260 MUTATED 1 0 2
ZNF260 WILD-TYPE 72 23 37
'ZNF260 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1367.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ZNF260 MUTATED 2 0 1
ZNF260 WILD-TYPE 75 26 31
'ZNF260 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Chi-square test), Q value = 1

Table S1368.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ZNF260 MUTATED 0 0 0 3 1
ZNF260 WILD-TYPE 58 37 29 31 12

Figure S99.  Get High-res Image Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF260 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1369.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ZNF260 MUTATED 0 2 2
ZNF260 WILD-TYPE 52 61 54
'ZNF260 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1370.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ZNF260 MUTATED 2 1 1
ZNF260 WILD-TYPE 57 79 28
'ZNF260 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1371.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ZNF260 MUTATED 1 1 2
ZNF260 WILD-TYPE 19 90 55
'ZNF260 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1372.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ZNF260 MUTATED 3 0 1
ZNF260 WILD-TYPE 43 35 23
'ZNF260 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1373.  Gene #132: 'ZNF260 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ZNF260 MUTATED 1 1 2
ZNF260 WILD-TYPE 10 45 46
'OLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S1374.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OLAH MUTATED 2 1 4
OLAH WILD-TYPE 65 71 29

Figure S100.  Get High-res Image Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1375.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OLAH MUTATED 3 1 0
OLAH WILD-TYPE 31 32 43
'OLAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1376.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OLAH MUTATED 2 0 3
OLAH WILD-TYPE 71 23 36
'OLAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 1

Table S1377.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OLAH MUTATED 0 1 4
OLAH WILD-TYPE 77 25 28

Figure S101.  Get High-res Image Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'OLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000389 (Chi-square test), Q value = 0.71

Table S1378.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OLAH MUTATED 0 0 1 6 0
OLAH WILD-TYPE 58 37 28 28 13

Figure S102.  Get High-res Image Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00945 (Fisher's exact test), Q value = 1

Table S1379.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OLAH MUTATED 0 1 6
OLAH WILD-TYPE 52 62 50

Figure S103.  Get High-res Image Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 1

Table S1380.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OLAH MUTATED 0 7 0
OLAH WILD-TYPE 59 73 29

Figure S104.  Get High-res Image Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S1381.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OLAH MUTATED 0 7 0
OLAH WILD-TYPE 20 84 57
'OLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1382.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OLAH MUTATED 1 3 0
OLAH WILD-TYPE 45 32 24
'OLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1383.  Gene #133: 'OLAH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OLAH MUTATED 0 3 1
OLAH WILD-TYPE 11 43 47
'GRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1384.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GRK5 MUTATED 3 3 1
GRK5 WILD-TYPE 64 69 32
'GRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1385.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GRK5 MUTATED 3 3 1
GRK5 WILD-TYPE 31 30 42
'GRK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1386.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GRK5 MUTATED 3 1 2
GRK5 WILD-TYPE 70 22 37
'GRK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1387.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GRK5 MUTATED 3 1 2
GRK5 WILD-TYPE 74 25 30
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Chi-square test), Q value = 1

Table S1388.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GRK5 MUTATED 3 1 1 1 1
GRK5 WILD-TYPE 55 36 28 33 12
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1389.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GRK5 MUTATED 2 3 2
GRK5 WILD-TYPE 50 60 54
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1390.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GRK5 MUTATED 4 3 0
GRK5 WILD-TYPE 55 77 29
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S1391.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GRK5 MUTATED 0 3 4
GRK5 WILD-TYPE 20 88 53
'GRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1392.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
GRK5 MUTATED 2 1 2
GRK5 WILD-TYPE 44 34 22
'GRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1393.  Gene #134: 'GRK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
GRK5 MUTATED 1 2 2
GRK5 WILD-TYPE 10 44 46
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1394.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ATM MUTATED 4 5 6
ATM WILD-TYPE 63 67 27
'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 1

Table S1395.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ATM MUTATED 2 6 0
ATM WILD-TYPE 32 27 43

Figure S105.  Get High-res Image Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1396.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ATM MUTATED 4 3 3
ATM WILD-TYPE 69 20 36
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1397.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ATM MUTATED 3 4 3
ATM WILD-TYPE 74 22 29
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0681 (Chi-square test), Q value = 1

Table S1398.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ATM MUTATED 5 2 1 7 0
ATM WILD-TYPE 53 35 28 27 13
'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1399.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ATM MUTATED 2 5 8
ATM WILD-TYPE 50 58 48
'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1400.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ATM MUTATED 4 10 1
ATM WILD-TYPE 55 70 28
'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1401.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ATM MUTATED 0 11 4
ATM WILD-TYPE 20 80 53
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1402.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ATM MUTATED 2 4 2
ATM WILD-TYPE 44 31 22
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1403.  Gene #135: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ATM MUTATED 2 4 2
ATM WILD-TYPE 9 42 46
'C1ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S1404.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C1ORF49 MUTATED 3 0 3
C1ORF49 WILD-TYPE 64 72 30

Figure S106.  Get High-res Image Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1405.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
C1ORF49 MUTATED 3 2 0
C1ORF49 WILD-TYPE 31 31 43
'C1ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1406.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
C1ORF49 MUTATED 2 0 3
C1ORF49 WILD-TYPE 71 23 36
'C1ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1407.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
C1ORF49 MUTATED 2 0 3
C1ORF49 WILD-TYPE 75 26 29
'C1ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Chi-square test), Q value = 1

Table S1408.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C1ORF49 MUTATED 4 0 0 2 0
C1ORF49 WILD-TYPE 54 37 29 32 13
'C1ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1409.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C1ORF49 MUTATED 2 1 3
C1ORF49 WILD-TYPE 50 62 53
'C1ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1410.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C1ORF49 MUTATED 2 4 0
C1ORF49 WILD-TYPE 57 76 29
'C1ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1411.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C1ORF49 MUTATED 0 4 2
C1ORF49 WILD-TYPE 20 87 55
'C1ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1412.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
C1ORF49 MUTATED 2 3 0
C1ORF49 WILD-TYPE 44 32 24
'C1ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1413.  Gene #136: 'C1ORF49 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
C1ORF49 MUTATED 0 4 1
C1ORF49 WILD-TYPE 11 42 47
'MFSD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S1414.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
MFSD8 MUTATED 0 1 0 3
MFSD8 WILD-TYPE 5 8 12 3

Figure S107.  Get High-res Image Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MFSD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S1415.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
MFSD8 MUTATED 3 0 1
MFSD8 WILD-TYPE 4 13 11

Figure S108.  Get High-res Image Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MFSD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1416.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MFSD8 MUTATED 3 1 1
MFSD8 WILD-TYPE 64 71 32
'MFSD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1417.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MFSD8 MUTATED 2 0 2
MFSD8 WILD-TYPE 71 23 37
'MFSD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1418.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MFSD8 MUTATED 1 1 2
MFSD8 WILD-TYPE 76 25 30
'MFSD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0171 (Chi-square test), Q value = 1

Table S1419.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MFSD8 MUTATED 1 0 0 4 0
MFSD8 WILD-TYPE 57 37 29 30 13

Figure S109.  Get High-res Image Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MFSD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1420.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MFSD8 MUTATED 1 1 3
MFSD8 WILD-TYPE 51 62 53
'MFSD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 1

Table S1421.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MFSD8 MUTATED 0 5 0
MFSD8 WILD-TYPE 59 75 29
'MFSD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1422.  Gene #137: 'MFSD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MFSD8 MUTATED 0 5 0
MFSD8 WILD-TYPE 20 86 57
'LELP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1423.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
LELP1 MUTATED 2 0 1
LELP1 WILD-TYPE 65 72 32
'LELP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 1

Table S1424.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
LELP1 MUTATED 0 3 0
LELP1 WILD-TYPE 34 30 43

Figure S110.  Get High-res Image Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LELP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Chi-square test), Q value = 1

Table S1425.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
LELP1 MUTATED 2 0 0 0 1
LELP1 WILD-TYPE 56 37 29 34 12
'LELP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1426.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
LELP1 MUTATED 1 1 1
LELP1 WILD-TYPE 51 62 55
'LELP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1427.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
LELP1 MUTATED 1 2 0
LELP1 WILD-TYPE 58 78 29
'LELP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1428.  Gene #138: 'LELP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
LELP1 MUTATED 0 2 1
LELP1 WILD-TYPE 20 89 56
'OR4A15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 1

Table S1429.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR4A15 MUTATED 9 0 5
OR4A15 WILD-TYPE 58 72 28

Figure S111.  Get High-res Image Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4A15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1430.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR4A15 MUTATED 3 4 1
OR4A15 WILD-TYPE 31 29 42
'OR4A15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1431.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR4A15 MUTATED 7 1 2
OR4A15 WILD-TYPE 66 22 37
'OR4A15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1432.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR4A15 MUTATED 8 1 1
OR4A15 WILD-TYPE 69 25 31
'OR4A15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0694 (Chi-square test), Q value = 1

Table S1433.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR4A15 MUTATED 9 0 2 3 0
OR4A15 WILD-TYPE 49 37 27 31 13
'OR4A15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 1

Table S1434.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR4A15 MUTATED 7 1 6
OR4A15 WILD-TYPE 45 62 50

Figure S112.  Get High-res Image Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4A15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1435.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR4A15 MUTATED 2 10 2
OR4A15 WILD-TYPE 57 70 27
'OR4A15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S1436.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR4A15 MUTATED 1 12 1
OR4A15 WILD-TYPE 19 79 56

Figure S113.  Get High-res Image Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR4A15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S1437.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR4A15 MUTATED 1 3 3
OR4A15 WILD-TYPE 45 32 21
'OR4A15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 1

Table S1438.  Gene #139: 'OR4A15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR4A15 MUTATED 0 6 1
OR4A15 WILD-TYPE 11 40 47
'FCRL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1439.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
FCRL4 MUTATED 3 3 1
FCRL4 WILD-TYPE 64 69 32
'FCRL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S1440.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
FCRL4 MUTATED 1 3 0
FCRL4 WILD-TYPE 33 30 43
'FCRL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1441.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
FCRL4 MUTATED 3 2 1
FCRL4 WILD-TYPE 70 21 38
'FCRL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S1442.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
FCRL4 MUTATED 1 3 2
FCRL4 WILD-TYPE 76 23 30

Figure S114.  Get High-res Image Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FCRL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Chi-square test), Q value = 1

Table S1443.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
FCRL4 MUTATED 2 2 0 2 0
FCRL4 WILD-TYPE 56 35 29 32 13
'FCRL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1444.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
FCRL4 MUTATED 2 3 1
FCRL4 WILD-TYPE 50 60 55
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1445.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
FCRL4 MUTATED 2 4 1
FCRL4 WILD-TYPE 57 76 28
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1446.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
FCRL4 MUTATED 1 6 0
FCRL4 WILD-TYPE 19 85 57
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1447.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
FCRL4 MUTATED 1 1 1
FCRL4 WILD-TYPE 45 34 23
'FCRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1448.  Gene #140: 'FCRL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
FCRL4 MUTATED 0 2 1
FCRL4 WILD-TYPE 11 44 47
'NT5DC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1449.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NT5DC3 MUTATED 1 3 1
NT5DC3 WILD-TYPE 66 69 32
'NT5DC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1450.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NT5DC3 MUTATED 1 2 1
NT5DC3 WILD-TYPE 33 31 42
'NT5DC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1451.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NT5DC3 MUTATED 5 0 0
NT5DC3 WILD-TYPE 68 23 39
'NT5DC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1452.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NT5DC3 MUTATED 4 1 0
NT5DC3 WILD-TYPE 73 25 32
'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Chi-square test), Q value = 1

Table S1453.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NT5DC3 MUTATED 2 1 1 1 0
NT5DC3 WILD-TYPE 56 36 28 33 13
'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1454.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NT5DC3 MUTATED 1 4 0
NT5DC3 WILD-TYPE 51 59 56
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1455.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NT5DC3 MUTATED 3 2 0
NT5DC3 WILD-TYPE 56 78 29
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1456.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NT5DC3 MUTATED 0 2 3
NT5DC3 WILD-TYPE 20 89 54
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1457.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NT5DC3 MUTATED 2 2 0
NT5DC3 WILD-TYPE 44 33 24
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1458.  Gene #141: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NT5DC3 MUTATED 0 2 2
NT5DC3 WILD-TYPE 11 44 46
'PTH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1459.  Gene #142: 'PTH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
PTH MUTATED 1 1 1
PTH WILD-TYPE 66 71 32
'PTH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Chi-square test), Q value = 1

Table S1460.  Gene #142: 'PTH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
PTH MUTATED 1 1 1 0 0
PTH WILD-TYPE 57 36 28 34 13
'PTH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1461.  Gene #142: 'PTH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
PTH MUTATED 1 1 1
PTH WILD-TYPE 51 62 55
'PTH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1462.  Gene #142: 'PTH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
PTH MUTATED 2 1 0
PTH WILD-TYPE 57 79 29
'PTH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1463.  Gene #142: 'PTH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
PTH MUTATED 0 1 2
PTH WILD-TYPE 20 90 55
'NAALAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1464.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NAALAD2 MUTATED 4 3 2
NAALAD2 WILD-TYPE 63 69 31
'NAALAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1465.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NAALAD2 MUTATED 1 2 3
NAALAD2 WILD-TYPE 33 31 40
'NAALAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1466.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NAALAD2 MUTATED 2 0 3
NAALAD2 WILD-TYPE 71 23 36
'NAALAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1467.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NAALAD2 MUTATED 3 0 2
NAALAD2 WILD-TYPE 74 26 30
'NAALAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Chi-square test), Q value = 1

Table S1468.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NAALAD2 MUTATED 6 1 1 1 0
NAALAD2 WILD-TYPE 52 36 28 33 13
'NAALAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1469.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NAALAD2 MUTATED 5 1 3
NAALAD2 WILD-TYPE 47 62 53
'NAALAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 1

Table S1470.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NAALAD2 MUTATED 0 8 1
NAALAD2 WILD-TYPE 59 72 28

Figure S115.  Get High-res Image Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NAALAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S1471.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NAALAD2 MUTATED 1 8 0
NAALAD2 WILD-TYPE 19 83 57

Figure S116.  Get High-res Image Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NAALAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1472.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NAALAD2 MUTATED 2 3 1
NAALAD2 WILD-TYPE 44 32 23
'NAALAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 1

Table S1473.  Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NAALAD2 MUTATED 1 5 0
NAALAD2 WILD-TYPE 10 41 48

Figure S117.  Get High-res Image Gene #143: 'NAALAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C8ORF37 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1474.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C8ORF37 MUTATED 4 2 0
C8ORF37 WILD-TYPE 63 70 33
'C8ORF37 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1475.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
C8ORF37 MUTATED 1 4 1
C8ORF37 WILD-TYPE 33 29 42
'C8ORF37 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1476.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
C8ORF37 MUTATED 4 0 1
C8ORF37 WILD-TYPE 69 23 38
'C8ORF37 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1477.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
C8ORF37 MUTATED 4 1 0
C8ORF37 WILD-TYPE 73 25 32
'C8ORF37 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Chi-square test), Q value = 1

Table S1478.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C8ORF37 MUTATED 2 1 1 1 1
C8ORF37 WILD-TYPE 56 36 28 33 12
'C8ORF37 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1479.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C8ORF37 MUTATED 1 4 1
C8ORF37 WILD-TYPE 51 59 55
'C8ORF37 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1480.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C8ORF37 MUTATED 1 5 0
C8ORF37 WILD-TYPE 58 75 29
'C8ORF37 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1481.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C8ORF37 MUTATED 0 4 2
C8ORF37 WILD-TYPE 20 87 55
'C8ORF37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1482.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
C8ORF37 MUTATED 4 1 1
C8ORF37 WILD-TYPE 42 34 23
'C8ORF37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1483.  Gene #144: 'C8ORF37 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
C8ORF37 MUTATED 0 3 3
C8ORF37 WILD-TYPE 11 43 45
'IL18RAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1484.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
IL18RAP MUTATED 1 2 2
IL18RAP WILD-TYPE 66 70 31
'IL18RAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1485.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
IL18RAP MUTATED 1 1 2
IL18RAP WILD-TYPE 33 32 41
'IL18RAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1486.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
IL18RAP MUTATED 2 0 2
IL18RAP WILD-TYPE 71 23 37
'IL18RAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1487.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
IL18RAP MUTATED 3 0 1
IL18RAP WILD-TYPE 74 26 31
'IL18RAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Chi-square test), Q value = 1

Table S1488.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
IL18RAP MUTATED 2 0 0 2 1
IL18RAP WILD-TYPE 56 37 29 32 12
'IL18RAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1489.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
IL18RAP MUTATED 2 1 2
IL18RAP WILD-TYPE 50 62 54
'IL18RAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1490.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
IL18RAP MUTATED 1 4 0
IL18RAP WILD-TYPE 58 76 29
'IL18RAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1491.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
IL18RAP MUTATED 0 4 1
IL18RAP WILD-TYPE 20 87 56
'IL18RAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1492.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
IL18RAP MUTATED 1 2 0
IL18RAP WILD-TYPE 45 33 24
'IL18RAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1493.  Gene #145: 'IL18RAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
IL18RAP MUTATED 0 2 1
IL18RAP WILD-TYPE 11 44 47
'STAC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1494.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
STAC3 MUTATED 1 2 0
STAC3 WILD-TYPE 66 70 33
'STAC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1495.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
STAC3 MUTATED 2 0 1
STAC3 WILD-TYPE 71 23 38
'STAC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1496.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
STAC3 MUTATED 1 1 1
STAC3 WILD-TYPE 76 25 31
'STAC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Chi-square test), Q value = 1

Table S1497.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
STAC3 MUTATED 1 0 0 1 1
STAC3 WILD-TYPE 57 37 29 33 12
'STAC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1498.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
STAC3 MUTATED 1 1 1
STAC3 WILD-TYPE 51 62 55
'STAC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1499.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
STAC3 MUTATED 0 3 0
STAC3 WILD-TYPE 59 77 29
'STAC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1500.  Gene #146: 'STAC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
STAC3 MUTATED 0 3 0
STAC3 WILD-TYPE 20 88 57
'TAAR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1501.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
TAAR5 MUTATED 1 3 3
TAAR5 WILD-TYPE 66 69 30
'TAAR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1502.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
TAAR5 MUTATED 1 1 1
TAAR5 WILD-TYPE 33 32 42
'TAAR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S1503.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
TAAR5 MUTATED 0 1 4
TAAR5 WILD-TYPE 73 22 35

Figure S118.  Get High-res Image Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TAAR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1504.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
TAAR5 MUTATED 2 1 2
TAAR5 WILD-TYPE 75 25 30
'TAAR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Chi-square test), Q value = 1

Table S1505.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
TAAR5 MUTATED 3 0 2 2 0
TAAR5 WILD-TYPE 55 37 27 32 13
'TAAR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1506.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
TAAR5 MUTATED 4 1 2
TAAR5 WILD-TYPE 48 62 54
'TAAR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1507.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
TAAR5 MUTATED 1 3 2
TAAR5 WILD-TYPE 58 77 27
'TAAR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1508.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
TAAR5 MUTATED 2 3 1
TAAR5 WILD-TYPE 18 88 56
'TAAR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S1509.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
TAAR5 MUTATED 0 1 2
TAAR5 WILD-TYPE 46 34 22
'TAAR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S1510.  Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
TAAR5 MUTATED 2 1 0
TAAR5 WILD-TYPE 9 45 48

Figure S119.  Get High-res Image Gene #147: 'TAAR5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C2ORF39 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1511.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
C2ORF39 MUTATED 0 1 1 2
C2ORF39 WILD-TYPE 5 8 11 4
'C2ORF39 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1512.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
C2ORF39 MUTATED 2 1 1
C2ORF39 WILD-TYPE 5 12 11
'C2ORF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1513.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
C2ORF39 MUTATED 2 3 3
C2ORF39 WILD-TYPE 65 69 30
'C2ORF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1514.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
C2ORF39 MUTATED 0 2 1
C2ORF39 WILD-TYPE 34 31 42
'C2ORF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1515.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
C2ORF39 MUTATED 2 0 2
C2ORF39 WILD-TYPE 71 23 37
'C2ORF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1516.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
C2ORF39 MUTATED 2 0 2
C2ORF39 WILD-TYPE 75 26 30
'C2ORF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Chi-square test), Q value = 1

Table S1517.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
C2ORF39 MUTATED 3 1 0 3 1
C2ORF39 WILD-TYPE 55 36 29 31 12
'C2ORF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1518.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
C2ORF39 MUTATED 1 2 5
C2ORF39 WILD-TYPE 51 61 51
'C2ORF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1519.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
C2ORF39 MUTATED 2 6 0
C2ORF39 WILD-TYPE 57 74 29
'C2ORF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1520.  Gene #148: 'C2ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
C2ORF39 MUTATED 1 6 1
C2ORF39 WILD-TYPE 19 85 56
'OR13G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1521.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR13G1 MUTATED 3 4 2
OR13G1 WILD-TYPE 64 68 31
'OR13G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1522.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR13G1 MUTATED 2 1 2
OR13G1 WILD-TYPE 32 32 41
'OR13G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1523.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR13G1 MUTATED 3 0 4
OR13G1 WILD-TYPE 70 23 35
'OR13G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1524.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR13G1 MUTATED 5 0 2
OR13G1 WILD-TYPE 72 26 30
'OR13G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Chi-square test), Q value = 1

Table S1525.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR13G1 MUTATED 4 1 3 1 0
OR13G1 WILD-TYPE 54 36 26 33 13
'OR13G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1526.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR13G1 MUTATED 2 2 5
OR13G1 WILD-TYPE 50 61 51
'OR13G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1527.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR13G1 MUTATED 1 5 2
OR13G1 WILD-TYPE 58 75 27
'OR13G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1528.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR13G1 MUTATED 0 7 1
OR13G1 WILD-TYPE 20 84 56
'OR13G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1529.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR13G1 MUTATED 2 2 1
OR13G1 WILD-TYPE 44 33 23
'OR13G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1530.  Gene #149: 'OR13G1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR13G1 MUTATED 0 4 1
OR13G1 WILD-TYPE 11 42 47
'OR2G2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1531.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
OR2G2 MUTATED 0 2 1 1
OR2G2 WILD-TYPE 5 7 11 5
'OR2G2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1532.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
OR2G2 MUTATED 1 2 1
OR2G2 WILD-TYPE 6 11 11
'OR2G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1533.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
OR2G2 MUTATED 4 5 3
OR2G2 WILD-TYPE 63 67 30
'OR2G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1534.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
OR2G2 MUTATED 2 3 2
OR2G2 WILD-TYPE 32 30 41
'OR2G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1535.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
OR2G2 MUTATED 7 2 0
OR2G2 WILD-TYPE 66 21 39
'OR2G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1536.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
OR2G2 MUTATED 6 3 0
OR2G2 WILD-TYPE 71 23 32
'OR2G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Chi-square test), Q value = 1

Table S1537.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
OR2G2 MUTATED 6 1 1 4 0
OR2G2 WILD-TYPE 52 36 28 30 13
'OR2G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1538.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
OR2G2 MUTATED 3 3 6
OR2G2 WILD-TYPE 49 60 50
'OR2G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1539.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
OR2G2 MUTATED 3 6 2
OR2G2 WILD-TYPE 56 74 27
'OR2G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1540.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
OR2G2 MUTATED 1 9 1
OR2G2 WILD-TYPE 19 82 56
'OR2G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1541.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
OR2G2 MUTATED 2 1 2
OR2G2 WILD-TYPE 44 34 22
'OR2G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1542.  Gene #150: 'OR2G2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
OR2G2 MUTATED 0 2 3
OR2G2 WILD-TYPE 11 44 45
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1543.  Gene #151: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
BTK MUTATED 3 2 2
BTK WILD-TYPE 64 70 31
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Chi-square test), Q value = 1

Table S1544.  Gene #151: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
BTK MUTATED 1 3 0 3 0
BTK WILD-TYPE 57 34 29 31 13
'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1545.  Gene #151: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
BTK MUTATED 2 1 4
BTK WILD-TYPE 50 62 52
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1546.  Gene #151: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
BTK MUTATED 3 4 0
BTK WILD-TYPE 56 76 29
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1547.  Gene #151: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
BTK MUTATED 0 5 2
BTK WILD-TYPE 20 86 55
'ADAMTS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1548.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ADAMTS2 MUTATED 5 5 4
ADAMTS2 WILD-TYPE 62 67 29
'ADAMTS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1549.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ADAMTS2 MUTATED 3 3 2
ADAMTS2 WILD-TYPE 31 30 41
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1550.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ADAMTS2 MUTATED 4 2 3
ADAMTS2 WILD-TYPE 69 21 36
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1551.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ADAMTS2 MUTATED 6 1 2
ADAMTS2 WILD-TYPE 71 25 30
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Chi-square test), Q value = 1

Table S1552.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ADAMTS2 MUTATED 6 1 1 5 1
ADAMTS2 WILD-TYPE 52 36 28 29 12
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1553.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ADAMTS2 MUTATED 5 2 7
ADAMTS2 WILD-TYPE 47 61 49
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1554.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ADAMTS2 MUTATED 3 8 3
ADAMTS2 WILD-TYPE 56 72 26
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1555.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ADAMTS2 MUTATED 0 10 4
ADAMTS2 WILD-TYPE 20 81 53
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1556.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ADAMTS2 MUTATED 4 2 1
ADAMTS2 WILD-TYPE 42 33 23
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1557.  Gene #152: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ADAMTS2 MUTATED 1 3 3
ADAMTS2 WILD-TYPE 10 43 45
'REG1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1558.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
REG1B MUTATED 0 2 2 1
REG1B WILD-TYPE 5 7 10 5
'REG1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
REG1B MUTATED 1 2 2
REG1B WILD-TYPE 6 11 10
'REG1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1560.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
REG1B MUTATED 5 4 4
REG1B WILD-TYPE 62 68 29
'REG1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1561.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
REG1B MUTATED 1 4 2
REG1B WILD-TYPE 33 29 41
'REG1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1562.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
REG1B MUTATED 5 4 3
REG1B WILD-TYPE 68 19 36
'REG1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1563.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
REG1B MUTATED 6 4 2
REG1B WILD-TYPE 71 22 30
'REG1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Chi-square test), Q value = 1

Table S1564.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
REG1B MUTATED 6 2 1 4 0
REG1B WILD-TYPE 52 35 28 30 13
'REG1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1565.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
REG1B MUTATED 5 5 3
REG1B WILD-TYPE 47 58 53
'REG1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1566.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
REG1B MUTATED 6 6 0
REG1B WILD-TYPE 53 74 29
'REG1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1567.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
REG1B MUTATED 1 6 5
REG1B WILD-TYPE 19 85 52
'REG1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1568.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
REG1B MUTATED 2 2 2
REG1B WILD-TYPE 44 33 22
'REG1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1569.  Gene #153: 'REG1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
REG1B MUTATED 1 3 2
REG1B WILD-TYPE 10 43 46
'COL5A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1570.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL5A2 MUTATED 9 6 3
COL5A2 WILD-TYPE 58 66 30
'COL5A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1571.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL5A2 MUTATED 5 5 3
COL5A2 WILD-TYPE 29 28 40
'COL5A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1572.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL5A2 MUTATED 8 0 6
COL5A2 WILD-TYPE 65 23 33
'COL5A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1573.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL5A2 MUTATED 8 1 5
COL5A2 WILD-TYPE 69 25 27
'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Chi-square test), Q value = 1

Table S1574.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL5A2 MUTATED 8 1 3 5 1
COL5A2 WILD-TYPE 50 36 26 29 12
'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1575.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL5A2 MUTATED 6 4 8
COL5A2 WILD-TYPE 46 59 48
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 1

Table S1576.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL5A2 MUTATED 1 12 4
COL5A2 WILD-TYPE 58 68 25

Figure S120.  Get High-res Image Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 1

Table S1577.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL5A2 MUTATED 1 14 2
COL5A2 WILD-TYPE 19 77 55

Figure S121.  Get High-res Image Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1578.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL5A2 MUTATED 5 5 2
COL5A2 WILD-TYPE 41 30 22
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1579.  Gene #154: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL5A2 MUTATED 0 6 6
COL5A2 WILD-TYPE 11 40 42
'NHEDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1580.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NHEDC1 MUTATED 3 4 2
NHEDC1 WILD-TYPE 64 68 31
'NHEDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1581.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NHEDC1 MUTATED 3 3 1
NHEDC1 WILD-TYPE 31 30 42
'NHEDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1582.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NHEDC1 MUTATED 4 2 1
NHEDC1 WILD-TYPE 69 21 38
'NHEDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1583.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NHEDC1 MUTATED 3 3 1
NHEDC1 WILD-TYPE 74 23 31
'NHEDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Chi-square test), Q value = 1

Table S1584.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NHEDC1 MUTATED 2 1 2 4 0
NHEDC1 WILD-TYPE 56 36 27 30 13
'NHEDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1585.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NHEDC1 MUTATED 2 2 5
NHEDC1 WILD-TYPE 50 61 51
'NHEDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1586.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NHEDC1 MUTATED 1 6 2
NHEDC1 WILD-TYPE 58 74 27
'NHEDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S1587.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NHEDC1 MUTATED 1 8 0
NHEDC1 WILD-TYPE 19 83 57

Figure S122.  Get High-res Image Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NHEDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1588.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NHEDC1 MUTATED 1 4 1
NHEDC1 WILD-TYPE 45 31 23
'NHEDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1589.  Gene #155: 'NHEDC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NHEDC1 MUTATED 0 5 1
NHEDC1 WILD-TYPE 11 41 47
'DGKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1590.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DGKB MUTATED 6 2 3
DGKB WILD-TYPE 61 70 30
'DGKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1591.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
DGKB MUTATED 3 3 3
DGKB WILD-TYPE 31 30 40
'DGKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 1

Table S1592.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
DGKB MUTATED 10 0 1
DGKB WILD-TYPE 63 23 38
'DGKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S1593.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
DGKB MUTATED 10 0 1
DGKB WILD-TYPE 67 26 31
'DGKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0491 (Chi-square test), Q value = 1

Table S1594.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DGKB MUTATED 7 0 0 3 0
DGKB WILD-TYPE 51 37 29 31 13

Figure S123.  Get High-res Image Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DGKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1595.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DGKB MUTATED 5 1 4
DGKB WILD-TYPE 47 62 52
'DGKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1596.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DGKB MUTATED 2 6 3
DGKB WILD-TYPE 57 74 26
'DGKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1597.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DGKB MUTATED 1 8 2
DGKB WILD-TYPE 19 83 55
'DGKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1598.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
DGKB MUTATED 3 3 2
DGKB WILD-TYPE 43 32 22
'DGKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1599.  Gene #156: 'DGKB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
DGKB MUTATED 0 5 3
DGKB WILD-TYPE 11 41 45
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1600.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
IL1RAPL1 MUTATED 1 1 1 1
IL1RAPL1 WILD-TYPE 4 8 11 5
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1601.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
IL1RAPL1 MUTATED 1 1 2
IL1RAPL1 WILD-TYPE 6 12 10
'IL1RAPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1602.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
IL1RAPL1 MUTATED 5 3 3
IL1RAPL1 WILD-TYPE 62 69 30
'IL1RAPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1603.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
IL1RAPL1 MUTATED 1 3 2
IL1RAPL1 WILD-TYPE 33 30 41
'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1604.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
IL1RAPL1 MUTATED 3 1 3
IL1RAPL1 WILD-TYPE 70 22 36
'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1605.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
IL1RAPL1 MUTATED 4 1 2
IL1RAPL1 WILD-TYPE 73 25 30
'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Chi-square test), Q value = 1

Table S1606.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
IL1RAPL1 MUTATED 7 2 0 2 0
IL1RAPL1 WILD-TYPE 51 35 29 32 13
'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1607.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
IL1RAPL1 MUTATED 6 2 3
IL1RAPL1 WILD-TYPE 46 61 53
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1608.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
IL1RAPL1 MUTATED 3 6 2
IL1RAPL1 WILD-TYPE 56 74 27
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S1609.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
IL1RAPL1 MUTATED 3 7 1
IL1RAPL1 WILD-TYPE 17 84 56
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 1

Table S1610.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
IL1RAPL1 MUTATED 0 4 1
IL1RAPL1 WILD-TYPE 46 31 23

Figure S124.  Get High-res Image Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 1

Table S1611.  Gene #157: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
IL1RAPL1 MUTATED 1 4 0
IL1RAPL1 WILD-TYPE 10 42 48
'SEMA5A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1612.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
SEMA5A MUTATED 0 2 0 1
SEMA5A WILD-TYPE 5 7 12 5
'SEMA5A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1613.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
SEMA5A MUTATED 1 0 2
SEMA5A WILD-TYPE 6 13 10
'SEMA5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1614.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SEMA5A MUTATED 4 8 3
SEMA5A WILD-TYPE 63 64 30
'SEMA5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1615.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SEMA5A MUTATED 2 3 5
SEMA5A WILD-TYPE 32 30 38
'SEMA5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1616.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SEMA5A MUTATED 5 2 7
SEMA5A WILD-TYPE 68 21 32
'SEMA5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1617.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SEMA5A MUTATED 6 2 6
SEMA5A WILD-TYPE 71 24 26
'SEMA5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Chi-square test), Q value = 1

Table S1618.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SEMA5A MUTATED 3 2 4 5 1
SEMA5A WILD-TYPE 55 35 25 29 12
'SEMA5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1619.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SEMA5A MUTATED 5 3 7
SEMA5A WILD-TYPE 47 60 49
'SEMA5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1620.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SEMA5A MUTATED 4 9 2
SEMA5A WILD-TYPE 55 71 27
'SEMA5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1621.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SEMA5A MUTATED 0 11 4
SEMA5A WILD-TYPE 20 80 53
'SEMA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1622.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SEMA5A MUTATED 4 4 2
SEMA5A WILD-TYPE 42 31 22
'SEMA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1623.  Gene #158: 'SEMA5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SEMA5A MUTATED 0 6 4
SEMA5A WILD-TYPE 11 40 44
'COL25A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1624.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
COL25A1 MUTATED 1 2 0 0
COL25A1 WILD-TYPE 4 7 12 6
'COL25A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1625.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
COL25A1 MUTATED 0 1 2
COL25A1 WILD-TYPE 7 12 10
'COL25A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1626.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
COL25A1 MUTATED 5 5 1
COL25A1 WILD-TYPE 62 67 32
'COL25A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1627.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
COL25A1 MUTATED 3 3 2
COL25A1 WILD-TYPE 31 30 41
'COL25A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1628.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
COL25A1 MUTATED 5 2 1
COL25A1 WILD-TYPE 68 21 38
'COL25A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1629.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
COL25A1 MUTATED 5 2 1
COL25A1 WILD-TYPE 72 24 31
'COL25A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Chi-square test), Q value = 1

Table S1630.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
COL25A1 MUTATED 3 2 1 3 2
COL25A1 WILD-TYPE 55 35 28 31 11
'COL25A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1631.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
COL25A1 MUTATED 3 5 3
COL25A1 WILD-TYPE 49 58 53
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1632.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
COL25A1 MUTATED 4 6 1
COL25A1 WILD-TYPE 55 74 28
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1633.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
COL25A1 MUTATED 1 6 4
COL25A1 WILD-TYPE 19 85 53
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1634.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
COL25A1 MUTATED 3 2 1
COL25A1 WILD-TYPE 43 33 23
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1635.  Gene #159: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
COL25A1 MUTATED 0 3 3
COL25A1 WILD-TYPE 11 43 45
'BHMT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 1

Table S1636.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
BHMT MUTATED 1 0 0 2
BHMT WILD-TYPE 4 9 12 4

Figure S125.  Get High-res Image Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BHMT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1637.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
BHMT MUTATED 2 0 1
BHMT WILD-TYPE 5 13 11
'BHMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1638.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
BHMT MUTATED 3 1 1
BHMT WILD-TYPE 64 71 32
'BHMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1639.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
BHMT MUTATED 3 0 1
BHMT WILD-TYPE 70 23 38
'BHMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1640.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
BHMT MUTATED 3 0 1
BHMT WILD-TYPE 74 26 31
'BHMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Chi-square test), Q value = 1

Table S1641.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
BHMT MUTATED 2 0 1 2 0
BHMT WILD-TYPE 56 37 28 32 13
'BHMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1642.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
BHMT MUTATED 2 1 2
BHMT WILD-TYPE 50 62 54
'BHMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1643.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
BHMT MUTATED 2 3 0
BHMT WILD-TYPE 57 77 29
'BHMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1644.  Gene #160: 'BHMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
BHMT MUTATED 0 3 2
BHMT WILD-TYPE 20 88 55
'CXCL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1645.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CXCL6 MUTATED 2 1 1
CXCL6 WILD-TYPE 65 71 32
'CXCL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1646.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CXCL6 MUTATED 1 2 0
CXCL6 WILD-TYPE 33 31 43
'CXCL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1647.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CXCL6 MUTATED 2 0 2
CXCL6 WILD-TYPE 71 23 37
'CXCL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1648.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CXCL6 MUTATED 2 1 1
CXCL6 WILD-TYPE 75 25 31
'CXCL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Chi-square test), Q value = 1

Table S1649.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CXCL6 MUTATED 2 0 0 2 0
CXCL6 WILD-TYPE 56 37 29 32 13
'CXCL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1650.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CXCL6 MUTATED 2 1 1
CXCL6 WILD-TYPE 50 62 55
'CXCL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1651.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CXCL6 MUTATED 0 3 1
CXCL6 WILD-TYPE 59 77 28
'CXCL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1652.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CXCL6 MUTATED 0 4 0
CXCL6 WILD-TYPE 20 87 57
'CXCL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1653.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CXCL6 MUTATED 1 2 0
CXCL6 WILD-TYPE 45 33 24
'CXCL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1654.  Gene #161: 'CXCL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CXCL6 MUTATED 0 2 1
CXCL6 WILD-TYPE 11 44 47
'MUC16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1655.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
MUC16 MUTATED 3 8 5 3
MUC16 WILD-TYPE 2 1 7 3
'MUC16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1656.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
MUC16 MUTATED 4 6 9
MUC16 WILD-TYPE 3 7 3
'MUC16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1657.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MUC16 MUTATED 34 28 16
MUC16 WILD-TYPE 33 44 17
'MUC16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S1658.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MUC16 MUTATED 12 18 17
MUC16 WILD-TYPE 22 15 26
'MUC16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S1659.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MUC16 MUTATED 34 6 21
MUC16 WILD-TYPE 39 17 18
'MUC16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1660.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MUC16 MUTATED 35 8 18
MUC16 WILD-TYPE 42 18 14
'MUC16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Chi-square test), Q value = 1

Table S1661.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MUC16 MUTATED 31 12 14 14 6
MUC16 WILD-TYPE 27 25 15 20 7
'MUC16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1662.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MUC16 MUTATED 28 22 27
MUC16 WILD-TYPE 24 41 29
'MUC16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1663.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MUC16 MUTATED 26 39 11
MUC16 WILD-TYPE 33 41 18
'MUC16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1664.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MUC16 MUTATED 10 44 22
MUC16 WILD-TYPE 10 47 35
'MUC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1665.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MUC16 MUTATED 19 14 9
MUC16 WILD-TYPE 27 21 15
'MUC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1666.  Gene #162: 'MUC16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MUC16 MUTATED 4 20 18
MUC16 WILD-TYPE 7 26 30
'DYDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1667.  Gene #163: 'DYDC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DYDC2 MUTATED 0 2 1
DYDC2 WILD-TYPE 67 70 32
'DYDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.875 (Chi-square test), Q value = 1

Table S1668.  Gene #163: 'DYDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DYDC2 MUTATED 1 1 0 1 0
DYDC2 WILD-TYPE 57 36 29 33 13
'DYDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1669.  Gene #163: 'DYDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DYDC2 MUTATED 1 1 1
DYDC2 WILD-TYPE 51 62 55
'DYDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1670.  Gene #163: 'DYDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DYDC2 MUTATED 1 2 0
DYDC2 WILD-TYPE 58 78 29
'DYDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1671.  Gene #163: 'DYDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DYDC2 MUTATED 0 2 1
DYDC2 WILD-TYPE 20 89 56
'CLEC12B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1672.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CLEC12B MUTATED 1 1 1
CLEC12B WILD-TYPE 66 71 32
'CLEC12B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1673.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
CLEC12B MUTATED 1 2 0
CLEC12B WILD-TYPE 72 21 39
'CLEC12B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1674.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
CLEC12B MUTATED 1 2 0
CLEC12B WILD-TYPE 76 24 32
'CLEC12B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.875 (Chi-square test), Q value = 1

Table S1675.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CLEC12B MUTATED 1 1 0 1 0
CLEC12B WILD-TYPE 57 36 29 33 13
'CLEC12B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1676.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CLEC12B MUTATED 1 2 0
CLEC12B WILD-TYPE 51 61 56
'CLEC12B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1677.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CLEC12B MUTATED 2 1 0
CLEC12B WILD-TYPE 57 79 29
'CLEC12B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1678.  Gene #164: 'CLEC12B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CLEC12B MUTATED 0 1 2
CLEC12B WILD-TYPE 20 90 55
'AKR1B10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1679.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
AKR1B10 MUTATED 2 2 0
AKR1B10 WILD-TYPE 65 70 33
'AKR1B10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1680.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
AKR1B10 MUTATED 1 0 3
AKR1B10 WILD-TYPE 33 33 40
'AKR1B10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1681.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
AKR1B10 MUTATED 4 0 0
AKR1B10 WILD-TYPE 69 23 39
'AKR1B10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1682.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
AKR1B10 MUTATED 4 0 0
AKR1B10 WILD-TYPE 73 26 32
'AKR1B10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Chi-square test), Q value = 1

Table S1683.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
AKR1B10 MUTATED 3 0 1 0 0
AKR1B10 WILD-TYPE 55 37 28 34 13
'AKR1B10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1684.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
AKR1B10 MUTATED 2 0 2
AKR1B10 WILD-TYPE 50 63 54
'AKR1B10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1685.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
AKR1B10 MUTATED 1 2 1
AKR1B10 WILD-TYPE 58 78 28
'AKR1B10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1686.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
AKR1B10 MUTATED 0 3 1
AKR1B10 WILD-TYPE 20 88 56
'AKR1B10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1687.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
AKR1B10 MUTATED 1 2 1
AKR1B10 WILD-TYPE 45 33 23
'AKR1B10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1688.  Gene #165: 'AKR1B10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
AKR1B10 MUTATED 0 3 1
AKR1B10 WILD-TYPE 11 43 47
'CMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1689.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
CMA1 MUTATED 1 3 0
CMA1 WILD-TYPE 66 69 33
'CMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1690.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
CMA1 MUTATED 1 1 1
CMA1 WILD-TYPE 33 32 42
'CMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Chi-square test), Q value = 1

Table S1691.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
CMA1 MUTATED 0 1 0 2 1
CMA1 WILD-TYPE 58 36 29 32 12
'CMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1692.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
CMA1 MUTATED 0 3 1
CMA1 WILD-TYPE 52 60 55
'CMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1693.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
CMA1 MUTATED 2 2 0
CMA1 WILD-TYPE 57 78 29
'CMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1694.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
CMA1 MUTATED 0 2 2
CMA1 WILD-TYPE 20 89 55
'CMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1695.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
CMA1 MUTATED 3 0 0
CMA1 WILD-TYPE 43 35 24
'CMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1696.  Gene #166: 'CMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
CMA1 MUTATED 0 0 3
CMA1 WILD-TYPE 11 46 45
'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1697.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
STX2 MUTATED 1 2 1
STX2 WILD-TYPE 66 70 32
'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1698.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
STX2 MUTATED 0 1 2
STX2 WILD-TYPE 34 32 41
'STX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1699.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
STX2 MUTATED 2 0 2
STX2 WILD-TYPE 71 23 37
'STX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1700.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
STX2 MUTATED 2 1 1
STX2 WILD-TYPE 75 25 31
'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Chi-square test), Q value = 1

Table S1701.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
STX2 MUTATED 2 0 0 2 0
STX2 WILD-TYPE 56 37 29 32 13
'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1702.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
STX2 MUTATED 2 1 1
STX2 WILD-TYPE 50 62 55
'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1703.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
STX2 MUTATED 0 3 1
STX2 WILD-TYPE 59 77 28
'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1704.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
STX2 MUTATED 1 3 0
STX2 WILD-TYPE 19 88 57
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1705.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
STX2 MUTATED 1 1 1
STX2 WILD-TYPE 45 34 23
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1706.  Gene #167: 'STX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
STX2 MUTATED 1 1 1
STX2 WILD-TYPE 10 45 47
'AQP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 1

Table S1707.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
AQP10 MUTATED 0 5 1
AQP10 WILD-TYPE 67 67 32
'AQP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1708.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
AQP10 MUTATED 1 0 4
AQP10 WILD-TYPE 33 33 39
'AQP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1709.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
AQP10 MUTATED 2 1 2
AQP10 WILD-TYPE 71 22 37
'AQP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1710.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
AQP10 MUTATED 2 1 2
AQP10 WILD-TYPE 75 25 30
'AQP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Chi-square test), Q value = 1

Table S1711.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
AQP10 MUTATED 2 1 1 1 1
AQP10 WILD-TYPE 56 36 28 33 12
'AQP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1712.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
AQP10 MUTATED 2 2 2
AQP10 WILD-TYPE 50 61 54
'AQP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1713.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
AQP10 MUTATED 2 2 2
AQP10 WILD-TYPE 57 78 27
'AQP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1714.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
AQP10 MUTATED 2 3 1
AQP10 WILD-TYPE 18 88 56
'AQP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1715.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
AQP10 MUTATED 1 2 0
AQP10 WILD-TYPE 45 33 24
'AQP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1716.  Gene #168: 'AQP10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
AQP10 MUTATED 0 2 1
AQP10 WILD-TYPE 11 44 47
'P2RX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1717.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
P2RX7 MUTATED 1 3 0
P2RX7 WILD-TYPE 66 69 33
'P2RX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1718.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
P2RX7 MUTATED 0 2 1
P2RX7 WILD-TYPE 34 31 42
'P2RX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1719.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
P2RX7 MUTATED 3 0 1
P2RX7 WILD-TYPE 70 23 38
'P2RX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1720.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
P2RX7 MUTATED 2 1 1
P2RX7 WILD-TYPE 75 25 31
'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Chi-square test), Q value = 1

Table S1721.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
P2RX7 MUTATED 1 0 1 1 1
P2RX7 WILD-TYPE 57 37 28 33 12
'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1722.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
P2RX7 MUTATED 1 2 1
P2RX7 WILD-TYPE 51 61 55
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1723.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
P2RX7 MUTATED 0 4 0
P2RX7 WILD-TYPE 59 76 29
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1724.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
P2RX7 MUTATED 0 4 0
P2RX7 WILD-TYPE 20 87 57
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1725.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
P2RX7 MUTATED 1 2 0
P2RX7 WILD-TYPE 45 33 24
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1726.  Gene #169: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
P2RX7 MUTATED 0 2 1
P2RX7 WILD-TYPE 11 44 47
'POLR3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1727.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
POLR3B MUTATED 0 0 1 2
POLR3B WILD-TYPE 5 9 11 4
'POLR3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1728.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
POLR3B MUTATED 2 1 0
POLR3B WILD-TYPE 5 12 12
'POLR3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 1

Table S1729.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
POLR3B MUTATED 1 6 4
POLR3B WILD-TYPE 66 66 29
'POLR3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1730.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
POLR3B MUTATED 1 2 2
POLR3B WILD-TYPE 33 31 41
'POLR3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1731.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
POLR3B MUTATED 4 0 3
POLR3B WILD-TYPE 69 23 36
'POLR3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1732.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
POLR3B MUTATED 3 1 3
POLR3B WILD-TYPE 74 25 29
'POLR3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Chi-square test), Q value = 1

Table S1733.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
POLR3B MUTATED 4 1 1 4 1
POLR3B WILD-TYPE 54 36 28 30 12
'POLR3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1734.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
POLR3B MUTATED 2 3 6
POLR3B WILD-TYPE 50 60 50
'POLR3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1735.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
POLR3B MUTATED 1 7 2
POLR3B WILD-TYPE 58 73 27
'POLR3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S1736.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
POLR3B MUTATED 1 9 0
POLR3B WILD-TYPE 19 82 57

Figure S126.  Get High-res Image Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLR3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1737.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
POLR3B MUTATED 3 2 0
POLR3B WILD-TYPE 43 33 24
'POLR3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1738.  Gene #170: 'POLR3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
POLR3B MUTATED 0 3 2
POLR3B WILD-TYPE 11 43 46
'NETO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S1739.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NETO1 MUTATED 2 6 6
NETO1 WILD-TYPE 65 66 27

Figure S127.  Get High-res Image Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NETO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1740.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NETO1 MUTATED 3 2 5
NETO1 WILD-TYPE 31 31 38
'NETO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1741.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NETO1 MUTATED 8 1 3
NETO1 WILD-TYPE 65 22 36
'NETO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1742.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NETO1 MUTATED 8 2 2
NETO1 WILD-TYPE 69 24 30
'NETO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Chi-square test), Q value = 1

Table S1743.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NETO1 MUTATED 3 3 2 5 1
NETO1 WILD-TYPE 55 34 27 29 12
'NETO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1744.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NETO1 MUTATED 2 6 6
NETO1 WILD-TYPE 50 57 50
'NETO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1745.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NETO1 MUTATED 6 7 1
NETO1 WILD-TYPE 53 73 28
'NETO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1746.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NETO1 MUTATED 2 8 4
NETO1 WILD-TYPE 18 83 53
'NETO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1747.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NETO1 MUTATED 5 4 1
NETO1 WILD-TYPE 41 31 23
'NETO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1748.  Gene #171: 'NETO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NETO1 MUTATED 0 4 6
NETO1 WILD-TYPE 11 42 42
'MGAT4C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1749.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
MGAT4C MUTATED 0 1 0 2
MGAT4C WILD-TYPE 5 8 12 4
'MGAT4C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1750.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
MGAT4C MUTATED 2 0 1
MGAT4C WILD-TYPE 5 13 11
'MGAT4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1751.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
MGAT4C MUTATED 2 3 2
MGAT4C WILD-TYPE 65 69 31
'MGAT4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1752.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
MGAT4C MUTATED 1 2 1
MGAT4C WILD-TYPE 33 31 42
'MGAT4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1753.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
MGAT4C MUTATED 6 0 1
MGAT4C WILD-TYPE 67 23 38
'MGAT4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1754.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
MGAT4C MUTATED 5 1 1
MGAT4C WILD-TYPE 72 25 31
'MGAT4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Chi-square test), Q value = 1

Table S1755.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
MGAT4C MUTATED 3 2 1 1 0
MGAT4C WILD-TYPE 55 35 28 33 13
'MGAT4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1756.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
MGAT4C MUTATED 3 2 2
MGAT4C WILD-TYPE 49 61 54
'MGAT4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1757.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
MGAT4C MUTATED 3 4 0
MGAT4C WILD-TYPE 56 76 29
'MGAT4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1758.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
MGAT4C MUTATED 0 4 3
MGAT4C WILD-TYPE 20 87 54
'MGAT4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1759.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
MGAT4C MUTATED 2 2 0
MGAT4C WILD-TYPE 44 33 24
'MGAT4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1760.  Gene #172: 'MGAT4C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
MGAT4C MUTATED 0 2 2
MGAT4C WILD-TYPE 11 44 46
'SLC34A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1761.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
SLC34A2 MUTATED 5 3 0
SLC34A2 WILD-TYPE 62 69 33
'SLC34A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1762.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
SLC34A2 MUTATED 2 2 1
SLC34A2 WILD-TYPE 32 31 42
'SLC34A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1763.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
SLC34A2 MUTATED 4 0 0
SLC34A2 WILD-TYPE 69 23 39
'SLC34A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1764.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
SLC34A2 MUTATED 3 1 0
SLC34A2 WILD-TYPE 74 25 32
'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Chi-square test), Q value = 1

Table S1765.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
SLC34A2 MUTATED 2 0 2 3 1
SLC34A2 WILD-TYPE 56 37 27 31 12
'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1766.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
SLC34A2 MUTATED 2 4 2
SLC34A2 WILD-TYPE 50 59 54
'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1767.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
SLC34A2 MUTATED 3 5 0
SLC34A2 WILD-TYPE 56 75 29
'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1768.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
SLC34A2 MUTATED 0 5 3
SLC34A2 WILD-TYPE 20 86 54
'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1769.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
SLC34A2 MUTATED 2 2 1
SLC34A2 WILD-TYPE 44 33 23
'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1770.  Gene #173: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
SLC34A2 MUTATED 0 3 2
SLC34A2 WILD-TYPE 11 43 46
'NTRK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1771.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
NTRK1 MUTATED 2 3 2
NTRK1 WILD-TYPE 65 69 31
'NTRK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1772.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
NTRK1 MUTATED 1 1 1
NTRK1 WILD-TYPE 33 32 42
'NTRK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1773.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
NTRK1 MUTATED 4 1 0
NTRK1 WILD-TYPE 69 22 39
'NTRK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0649 (Fisher's exact test), Q value = 1

Table S1774.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
NTRK1 MUTATED 2 3 0
NTRK1 WILD-TYPE 75 23 32
'NTRK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Chi-square test), Q value = 1

Table S1775.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
NTRK1 MUTATED 2 1 1 3 0
NTRK1 WILD-TYPE 56 36 28 31 13
'NTRK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1776.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
NTRK1 MUTATED 2 2 3
NTRK1 WILD-TYPE 50 61 53
'NTRK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1777.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
NTRK1 MUTATED 1 6 0
NTRK1 WILD-TYPE 58 74 29
'NTRK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1778.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
NTRK1 MUTATED 0 6 1
NTRK1 WILD-TYPE 20 85 56
'NTRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1779.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
NTRK1 MUTATED 2 1 0
NTRK1 WILD-TYPE 44 34 24
'NTRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1780.  Gene #174: 'NTRK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
NTRK1 MUTATED 0 2 1
NTRK1 WILD-TYPE 11 44 47
'DYTN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1781.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 9 12 6
DYTN MUTATED 0 1 1 1
DYTN WILD-TYPE 5 8 11 5
'DYTN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1782.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 13 12
DYTN MUTATED 1 1 1
DYTN WILD-TYPE 6 12 11
'DYTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1783.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
DYTN MUTATED 4 3 3
DYTN WILD-TYPE 63 69 30
'DYTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1784.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
DYTN MUTATED 3 2 2
DYTN WILD-TYPE 31 31 41
'DYTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1785.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
DYTN MUTATED 5 1 2
DYTN WILD-TYPE 68 22 37
'DYTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1786.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
DYTN MUTATED 5 1 2
DYTN WILD-TYPE 72 25 30
'DYTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Chi-square test), Q value = 1

Table S1787.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
DYTN MUTATED 1 2 2 5 0
DYTN WILD-TYPE 57 35 27 29 13
'DYTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S1788.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
DYTN MUTATED 1 2 7
DYTN WILD-TYPE 51 61 49
'DYTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1789.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
DYTN MUTATED 2 5 3
DYTN WILD-TYPE 57 75 26
'DYTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1790.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
DYTN MUTATED 1 7 2
DYTN WILD-TYPE 19 84 55
'DYTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1791.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
DYTN MUTATED 1 4 1
DYTN WILD-TYPE 45 31 23
'DYTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1792.  Gene #175: 'DYTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
DYTN MUTATED 1 4 1
DYTN WILD-TYPE 10 42 47
'VEGFC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1793.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
VEGFC MUTATED 2 6 1
VEGFC WILD-TYPE 65 66 32
'VEGFC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1794.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
VEGFC MUTATED 0 3 2
VEGFC WILD-TYPE 34 30 41
'VEGFC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1795.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
VEGFC MUTATED 7 0 1
VEGFC WILD-TYPE 66 23 38
'VEGFC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1796.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
VEGFC MUTATED 7 1 0
VEGFC WILD-TYPE 70 25 32
'VEGFC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Chi-square test), Q value = 1

Table S1797.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
VEGFC MUTATED 6 1 2 0 0
VEGFC WILD-TYPE 52 36 27 34 13
'VEGFC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S1798.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
VEGFC MUTATED 6 1 2
VEGFC WILD-TYPE 46 62 54
'VEGFC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1799.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
VEGFC MUTATED 3 4 2
VEGFC WILD-TYPE 56 76 27
'VEGFC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1800.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
VEGFC MUTATED 0 6 3
VEGFC WILD-TYPE 20 85 54
'VEGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1801.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
VEGFC MUTATED 1 3 1
VEGFC WILD-TYPE 45 32 23
'VEGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1802.  Gene #176: 'VEGFC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
VEGFC MUTATED 0 3 2
VEGFC WILD-TYPE 11 43 46
'GC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1803.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
GC MUTATED 0 3 2
GC WILD-TYPE 67 69 31
'GC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1804.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
GC MUTATED 1 1 1
GC WILD-TYPE 33 32 42
'GC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1805.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
GC MUTATED 2 1 2
GC WILD-TYPE 71 22 37
'GC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1806.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
GC MUTATED 1 2 2
GC WILD-TYPE 76 24 30
'GC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Chi-square test), Q value = 1

Table S1807.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
GC MUTATED 1 1 0 3 0
GC WILD-TYPE 57 36 29 31 13
'GC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1808.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
GC MUTATED 1 2 2
GC WILD-TYPE 51 61 54
'GC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1809.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
GC MUTATED 0 4 1
GC WILD-TYPE 59 76 28
'GC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1810.  Gene #177: 'GC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
GC MUTATED 1 4 0
GC WILD-TYPE 19 87 57
'EHHADH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1811.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
EHHADH MUTATED 0 3 1
EHHADH WILD-TYPE 67 69 32
'EHHADH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1812.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
EHHADH MUTATED 0 1 2
EHHADH WILD-TYPE 34 32 41
'EHHADH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1813.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
EHHADH MUTATED 3 0 1
EHHADH WILD-TYPE 70 23 38
'EHHADH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1814.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
EHHADH MUTATED 3 1 0
EHHADH WILD-TYPE 74 25 32
'EHHADH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Chi-square test), Q value = 1

Table S1815.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
EHHADH MUTATED 2 0 1 1 0
EHHADH WILD-TYPE 56 37 28 33 13
'EHHADH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1816.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
EHHADH MUTATED 3 1 0
EHHADH WILD-TYPE 49 62 56
'EHHADH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1817.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
EHHADH MUTATED 2 2 0
EHHADH WILD-TYPE 57 78 29
'EHHADH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1818.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
EHHADH MUTATED 0 2 2
EHHADH WILD-TYPE 20 89 55
'EHHADH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1819.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
EHHADH MUTATED 2 1 0
EHHADH WILD-TYPE 44 34 24
'EHHADH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1820.  Gene #178: 'EHHADH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
EHHADH MUTATED 0 1 2
EHHADH WILD-TYPE 11 45 46
'ABCG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1821.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 72 33
ABCG5 MUTATED 3 4 2
ABCG5 WILD-TYPE 64 68 31
'ABCG5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 1

Table S1822.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 34 33 43
ABCG5 MUTATED 3 3 0
ABCG5 WILD-TYPE 31 30 43
'ABCG5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1823.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 23 39
ABCG5 MUTATED 3 1 3
ABCG5 WILD-TYPE 70 22 36
'ABCG5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 1

Table S1824.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 26 32
ABCG5 MUTATED 1 2 4
ABCG5 WILD-TYPE 76 24 28

Figure S128.  Get High-res Image Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ABCG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Chi-square test), Q value = 1

Table S1825.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 58 37 29 34 13
ABCG5 MUTATED 3 1 1 4 0
ABCG5 WILD-TYPE 55 36 28 30 13
'ABCG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1826.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 52 63 56
ABCG5 MUTATED 3 4 2
ABCG5 WILD-TYPE 49 59 54
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1827.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 80 29
ABCG5 MUTATED 3 4 2
ABCG5 WILD-TYPE 56 76 27
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1828.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 20 91 57
ABCG5 MUTATED 0 6 3
ABCG5 WILD-TYPE 20 85 54
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1829.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 46 35 24
ABCG5 MUTATED 3 2 1
ABCG5 WILD-TYPE 43 33 23
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1830.  Gene #179: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 11 46 48
ABCG5 MUTATED 1 2 3
ABCG5 WILD-TYPE 10 44 45
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = LUAD-TP.transferedmergedcluster.txt

  • Number of patients = 172

  • Number of significantly mutated genes = 179

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Chi-square test

For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Greenwood and Nikulin, A guide to chi-squared testing, Wiley, New York. ISBN 047155779X (1996)
[3] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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