		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	227 (40%)	342	0.95097	1	0.92815	1	0.23072	1	0.091787	1	0.017699	1	0.14391	1	0.96334	1	0.99798	1	0.3498	1	0.77087	1	0.31164	1	0.87283	1	0.87069	1	0.66796	1
1q	257 (45%)	312	0.29228	1	0.15356	1	0.603	1	0.035962	1	1.9955e-07	0.000109	0.0039024	1	0.90948	1	0.96935	1	0.33855	1	0.64192	1	0.22622	1	0.42656	1	0.35637	1	0.30393	1
2p	231 (41%)	338	1.3963e-05	0.0075	3.0011e-05	0.016	0.62169	1	0.001922	0.965	1.1378e-08	6.28e-06	5.3676e-07	0.000292	0.030919	1	0.49381	1	0.0023032	1	0.071297	1	0.87641	1	0.88331	1	0.4233	1	0.30332	1
2q	209 (37%)	360	0.00159	0.801	0.0012322	0.627	0.85431	1	0.028467	1	2.6834e-07	0.000147	0.00014687	0.0773	0.052525	1	0.46929	1	0.036507	1	0.26002	1	0.78031	1	0.87665	1	0.19604	1	0.56852	1
3p	249 (44%)	320	0.37104	1	0.19093	1	0.17533	1	0.78347	1	1.8733e-08	1.03e-05	0.012342	1	0.75949	1	0.39528	1	0.2319	1	0.71263	1	0.24993	1	0.53791	1	0.84404	1	0.44285	1
3q	309 (54%)	260	0.25559	1	0.084329	1	0.61011	1	0.10557	1	2.2771e-10	1.27e-07	2.8812e-05	0.0154	0.57644	1	0.4284	1	0.24888	1	0.44319	1	0.17842	1	0.27988	1	0.467	1	0.31151	1
4p	369 (65%)	200	0.23256	1	0.1377	1	0.56162	1	0.015954	1	0.0011918	0.608	0.057529	1	0.074853	1	0.090208	1	0.21884	1	0.90949	1	0.33649	1	0.27333	1	0.17605	1	0.24185	1
4q	387 (68%)	182	0.13632	1	0.12458	1	0.46388	1	0.029353	1	0.0016002	0.805	0.054409	1	0.074707	1	0.060065	1	0.38236	1	0.35171	1	0.38925	1	0.088794	1	0.056483	1	0.024246	1
5p	325 (57%)	244	0.22957	1	0.22591	1	0.74479	1	0.0971	1	4.4677e-08	2.46e-05	5.3549e-05	0.0284	0.070376	1	0.30379	1	0.10265	1	0.62118	1	0.59975	1	1	1	0.17383	1	0.94995	1
5q	278 (49%)	291	0.016974	1	0.14243	1	0.71261	1	0.0085042	1	5.9069e-05	0.0312	5.6924e-06	0.00307	0.02052	1	0.14198	1	0.0030454	1	0.82047	1	0.20465	1	0.20033	1	0.12224	1	0.3788	1
6p	330 (58%)	239	0.68996	1	0.7127	1	0.65442	1	0.49867	1	0.026532	1	0.080363	1	0.5686	1	0.048465	1	0.81105	1	0.90798	1	0.94708	1	0.73711	1	0.96549	1	0.82928	1
6q	335 (59%)	234	0.70192	1	0.51175	1	0.72027	1	0.81771	1	0.35049	1	0.32201	1	0.32725	1	0.077999	1	0.66466	1	0.44814	1	0.72419	1	0.71267	1	0.84827	1	0.89152	1
7p	299 (53%)	270	0.63551	1	0.46593	1	0.56532	1	0.4549	1	5.2504e-05	0.0279	0.0014883	0.753	0.15948	1	0.86288	1	0.31482	1	0.46051	1	0.81548	1	0.93395	1	0.62171	1	0.76465	1
7q	279 (49%)	290	0.70751	1	0.70787	1	0.88258	1	0.75475	1	6.5751e-05	0.0347	0.009978	1	0.5725	1	0.61653	1	0.39205	1	0.70183	1	0.63317	1	0.73274	1	0.28445	1	0.82015	1
8p	388 (68%)	181	0.029207	1	0.01247	1	0.13161	1	0.035908	1	0.00059551	0.307	0.22016	1	0.86809	1	0.60005	1	0.36255	1	0.8262	1	0.1561	1	0.31339	1	0.48524	1	0.07763	1
8q	326 (57%)	243	0.045183	1	0.004639	1	0.24063	1	0.027254	1	0.01338	1	0.0056407	1	0.68728	1	0.88291	1	0.92217	1	0.71581	1	0.40962	1	0.94765	1	0.35637	1	0.81185	1
9p	346 (61%)	223	0.18483	1	0.096757	1	0.70153	1	0.37306	1	7.0892e-06	0.00382	0.044717	1	0.92159	1	0.66826	1	0.63531	1	0.603	1	0.48781	1	0.52544	1	0.29493	1	0.86599	1
9q	325 (57%)	244	0.035743	1	0.14615	1	0.56294	1	0.086768	1	8.3461e-11	4.66e-08	0.024241	1	0.33867	1	0.71631	1	0.0077526	1	0.39226	1	0.46073	1	0.36541	1	0.44318	1	0.23901	1
10p	278 (49%)	291	0.037421	1	0.065997	1	0.14967	1	0.027732	1	3.7304e-09	2.07e-06	2.016e-06	0.00109	0.60716	1	0.94867	1	0.027226	1	0.1695	1	0.66384	1	0.93241	1	0.81961	1	0.21814	1
10q	230 (40%)	339	0.043972	1	0.036174	1	0.04789	1	0.0026461	1	8.9504e-06	0.00482	1.4502e-05	0.00777	0.21372	1	0.19149	1	0.054729	1	0.037166	1	0.45037	1	0.7242	1	0.78006	1	0.60491	1
11p	269 (47%)	300	0.50603	1	0.20937	1	0.51496	1	0.32316	1	0.021545	1	0.0022488	1	0.30382	1	0.82079	1	0.093546	1	0.14884	1	0.25714	1	0.12757	1	0.045836	1	0.16021	1
11q	258 (45%)	311	0.66999	1	0.53541	1	0.46885	1	0.28158	1	0.0001855	0.0968	0.0012394	0.63	0.053013	1	0.50872	1	0.80235	1	0.51952	1	0.41795	1	0.39666	1	0.10924	1	0.38465	1
12p	328 (58%)	241	0.0091594	1	0.02269	1	0.97389	1	0.14492	1	4.526e-08	2.48e-05	3.6845e-05	0.0196	0.34474	1	0.75998	1	0.0096254	1	0.054575	1	0.91595	1	0.42712	1	0.63538	1	0.95946	1
12q	278 (49%)	291	0.43821	1	0.24145	1	0.86521	1	0.88745	1	2.8445e-07	0.000155	0.004971	1	0.33986	1	0.71851	1	0.064532	1	0.50916	1	0.72331	1	0.26243	1	0.72415	1	0.83133	1
13q	363 (64%)	206	0.69974	1	0.42864	1	0.70465	1	0.55243	1	0.047993	1	0.0009617	0.491	0.037236	1	0.036021	1	0.40959	1	0.78732	1	0.84797	1	0.51091	1	0.09014	1	0.90444	1
14q	266 (47%)	303	0.02727	1	0.038095	1	0.62253	1	0.20915	1	0.00013714	0.0723	0.00094196	0.482	0.57205	1	0.25321	1	0.01049	1	0.023539	1	0.49101	1	0.60384	1	0.70756	1	0.54714	1
15q	315 (55%)	254	0.0003697	0.192	0.00021974	0.114	0.0015505	0.783	0.0060991	1	8.2091e-11	4.59e-08	4.4327e-06	0.0024	0.19972	1	0.50766	1	0.036895	1	0.54121	1	0.013674	1	0.55479	1	0.043505	1	0.011276	1
16p	383 (67%)	186	0.15888	1	0.50371	1	0.13171	1	0.37966	1	0.0012594	0.638	0.0060829	1	0.94912	1	0.58313	1	0.046809	1	0.67469	1	0.095292	1	0.70538	1	0.20025	1	0.091816	1
16q	434 (76%)	135	0.67071	1	0.30228	1	0.015716	1	0.16116	1	0.00016572	0.0867	0.033834	1	0.57314	1	0.98475	1	0.12563	1	0.72742	1	0.0954	1	0.43595	1	0.089509	1	0.86814	1
17p	493 (87%)	76	0.52771	1	0.23745	1	0.62634	1	0.8078	1	0.11212	1	0.44163	1	0.86729	1	0.41679	1	0.39963	1	0.28949	1	0.18948	1	0.37968	1	0.018524	1	0.54649	1
17q	425 (75%)	144	0.26198	1	0.20298	1	0.010365	1	0.57301	1	0.77502	1	0.39925	1	0.81013	1	0.66125	1	0.27236	1	0.53785	1	0.062026	1	0.13255	1	0.00043863	0.227	0.61735	1
18p	351 (62%)	218	0.39152	1	0.3258	1	0.45274	1	0.80127	1	0.034583	1	0.02782	1	0.41069	1	0.043889	1	0.0047354	1	0.5668	1	0.35471	1	0.40516	1	0.52307	1	0.56537	1
18q	361 (63%)	208	0.42551	1	0.11738	1	0.89678	1	0.92354	1	0.33544	1	0.12237	1	0.65848	1	0.011023	1	0.016804	1	0.84864	1	0.34125	1	0.56515	1	0.071794	1	0.57201	1
19p	348 (61%)	221	0.12338	1	0.099392	1	0.086665	1	0.70209	1	9.9769e-10	5.55e-07	2.152e-05	0.0115	0.35349	1	0.33902	1	0.073044	1	0.27307	1	0.73964	1	0.22114	1	0.76174	1	0.86709	1
19q	332 (58%)	237	0.096702	1	0.05994	1	0.13571	1	0.73733	1	6.7123e-08	3.68e-05	0.00050327	0.26	0.47465	1	0.23401	1	0.23563	1	0.10318	1	0.95976	1	0.73106	1	0.9877	1	0.69711	1
20p	331 (58%)	238	0.011425	1	0.0079186	1	0.37944	1	0.00062216	0.32	7.0438e-09	3.9e-06	1.5883e-06	0.000862	0.049164	1	0.23142	1	0.00091189	0.468	0.97746	1	0.64143	1	0.9377	1	0.73368	1	0.63571	1
20q	351 (62%)	218	0.00027958	0.145	0.0046608	1	0.60416	1	0.0020741	1	3.7051e-14	2.07e-11	1.5987e-09	8.87e-07	0.13529	1	0.2396	1	0.0068331	1	0.87904	1	0.45524	1	0.8734	1	0.92077	1	0.77521	1
21q	304 (53%)	265	0.60869	1	0.26488	1	0.32953	1	0.52864	1	0.00015774	0.0827	0.00014937	0.0784	0.49728	1	0.35895	1	0.50218	1	0.41312	1	0.28455	1	0.53668	1	0.7754	1	0.60825	1
22q	446 (78%)	123	0.010332	1	0.029701	1	0.013946	1	0.05766	1	0.0005843	0.301	0.022748	1	0.19584	1	0.19164	1	0.036557	1	0.85941	1	0.13277	1	0.24031	1	0.052129	1	0.1797	1
xq	377 (66%)	192	0.01975	1	0.19031	1	0.12676	1	0.44834	1	0.06493	1	0.10979	1	0.022933	1	0.020429	1	0.81241	1	0.47415	1	0.40026	1	0.58555	1	0.30673	1	0.49253	1
