# Created: Mon Jan 27 05:45:59 EST 2014 by cgaadm_deadline
# Job: 503392    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_geneListPathwayEnrichment urn:lsid:broadinstitute.org:cancer.genome.analysis:00268:29
# Parameters: 
#    MSigDB_C2 = file:/xchip/cga/reference/MSigDB/c2.cp.v3.0-2.symbols.gmt
#    refseqGeneInfo = file:/xchip/cga/reference/hg18_refseq_download.txt
#    geneList_expr = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/OV-TP/6156256/3.GDAC_selectBestcluster.Finished/OV-TP.subclassmarkers.txt
#    geneList_gisticAmp = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Gistic2/OV-TP/6154705/Gistic2_Analysis_6154868/amp_genes.conf_99.txt
#    geneList_gisticDel = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Gistic2/OV-TP/6154705/GDAC_Gistic2Report_6158489/del_genes.conf_99.txt
#    geneList_exprCghCor = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/getCopyNumberExpCor/OV-TP/6158877/1.getCNExpCorrelation.Finished/OV-TP.CORS.tsv
#    geneList_mutation = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MergeMutSigRunResults/OV-TP/5096212/OV-TP.sig_genes.txt
#    outPrefix = pathwayEnrich
