choose2 ARGS   /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/ /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/call_gistic2 . 4 /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/segmentationfile.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/markersfile.txt /xchip/cga/reference/gistic2/hg19_with_miR_20120227.mat /xchip/cga/reference/gistic2/CNV.hg19.bypos.111213.txt 0.3 0.3 2 0.5 0 0.99 10 1 10000 0 mean /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/version.txt
choose2 CMD    run_matlab2.py ARGS
Warning: No display specified.  You will not be able to display graphics on the screen.
Running GISTIC version 2.0.20

fields = 

    {1x1 cell}    {1x1 cell}


cgaRevision =

Firehose task version: 126


inputInfoFilename =

gisticInputs.txt


fid =

     3


ans =

     9


ans =

   121


ans =

   111


ans =

    73


ans =

    65


ans =

    28


ans =

    23


ans =

    13


ans =

    24


ans =

    22


ans =

    22


ans =

    21


ans =

    21


ans =

    30


ans =

    17


ans =

    26


ans =

     0

...Matching fields to Array List File:
      Array  --->  array

conf_level =

    0.9900


params = 

         array_list_file: 'array_list.txt'
                cnv_file: {[1x54 char]}
                   t_amp: 0.3000
                   t_del: 0.3000
             genepattern: 0
       join_segment_size: 10
                     ext: ''
                remove_X: 0
      run_broad_analysis: 1
                   ziggs: [1x1 struct]
        broad_len_cutoff: 0.5000
               qv_thresh: 0.2500
              conf_level: [0.9900 0.9900]
                     cap: 2
                   alpha: [2.5145 2.1653]
          do_gene_gistic: 0
         save_data_files: 1
     conserve_disk_space: 0
            use_segarray: 1
        write_gene_files: 1
           use_two_sided: 0
          do_arbitration: 1
              peak_types: ''
           save_seg_data: 1
             arm_peeloff: 1
    gene_collapse_method: 'mean'

Checking inputs...
Making D struct
Reading Markers File '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/markersfile.txt'
Reading Seg File '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/segmentationfile.txt'
CL = 
               sdesc: {568x1 cell}
                chrn: [390430x1 double]
                 pos: [390430x1 double]
              marker: {390430x1 cell}
                 chr: {1x390430 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [390430x568 SegArray]

Sub-selecting samples...
...Matching fields to Array List File:
      Array  --->  array
Matched all 568 samples in array list file
CL = 
               sdesc: {568x1 cell}
                chrn: [390430x1 double]
                 pos: [390430x1 double]
              marker: {390430x1 cell}
                 chr: {1x390430 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [390430x568 SegArray]

Matrix size 390430     568
Removing 60338 markers
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Removing 30921 markers with NaNs
Matrix size 299171     568
Merging small segments...
currently not taking care of edge of chromosomes!!!
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Median centering data...
Saving segmented data file...
Running focal analysis...
Using supplied D...
Loading cytoband/refgene file: '/xchip/cga/reference/gistic2/hg19_with_miR_20120227.mat'
...Matching fields to Array List File:
      Array  --->  array
Subselecting 568 samples in data.

Nsamples =

   568

Running focal GISTIC version 2.0.20
params = 
         array_list_file: 'array_list.txt'
                cnv_file: {[1x54 char]}
                   t_amp: 0.3000
                   t_del: 0.3000
             genepattern: 0
       join_segment_size: 10
                     ext: ''
                remove_X: 0
      run_broad_analysis: 1
                   ziggs: [1x1 struct]
        broad_len_cutoff: 0.5000
               qv_thresh: 0.2500
              conf_level: [0.9900 0.9900]
                     cap: 2
                   alpha: [2.5145 2.1653]
          do_gene_gistic: 0
         save_data_files: 1
     conserve_disk_space: 0
            use_segarray: 1
        write_gene_files: 1
           use_two_sided: 0
          do_arbitration: 1
              peak_types: ''
           save_seg_data: 1
             arm_peeloff: 1
    gene_collapse_method: 'mean'
                     res: 8.8028e-05
                   fname: ''
                   islog: 1

Removed 0 samples with more than 10000 segments
Converting data from log to copy number space...
Performing ziggurat deconstruction!
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Reconstructing focal genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/PANCAN12-TP/6154986/focal_dat.0.5.mat
Scoring segments...
Reconstructing genome: amp
Reconstructing genome: del
Scoring genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/PANCAN12-TP/6154986/scores.0.5.mat
Performing background permutations...
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Conv:........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
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Conv:........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Saving stats...
Running arbitrated peel-off...
Finding peaks on chromosome 1
Removing 1156 segments from data
Removing 350 segments from data
Removing 302 segments from data
Resolving conflicts...
Removing 349 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr1:161035252-161070225(14565:14572)
q-value = 1.3989e-15 & residual q-value = 1.1694e-10
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr1:40428006-40433921(3871:3872)
q-value = 0.0028647 & residual q-value = 0.0028647
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr1:150564746-150617390(13464:13477)
q-value = 6.9336e-12 & residual q-value = 9.8258e-06
Finding peaks on chromosome 2
Removing 376 segments from data
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Removing 705 segments from data
Resolving conflicts...
{Warning: Arbitrated peel-off has shifted peak!} 
> In identify_peaks_by_arbitration at 279
  In run_focal_gistic at 246
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Removing 21 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr2:97507567-97654820(33965:33976)
q-value = 0.0021888 & residual q-value = 0.0084813
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr2:11412713-11438103(25525:25528)
q-value = 0.084643 & residual q-value = 0.084643
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr2:170625645-170737277(41668:41679)
q-value = 0.048877 & residual q-value = 0.11471
Finding peaks on chromosome 3
Removing 122 segments from data
Removing 880 segments from data
Removing 59 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr3:12037673-12181459(50452:50457)
q-value = 9.3185e-06 & residual q-value = 9.3185e-06
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr3:170071163-170114593(67752:67757)
q-value = 3.0833e-05 & residual q-value = 3.0833e-05
Finding peaks on chromosome 4
Removing 88 segments from data
Removing 474 segments from data
Removing 222 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr4:10246651-10246651(71230:71230)
q-value = 0.00097068 & residual q-value = 0.00097068
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr4:74111764-74137543(78384:78391)
q-value = 0.22454 & residual q-value = 0.22454
Finding peaks on chromosome 5
Removing 156 segments from data
Removing 315 segments from data
Removing 199 segments from data
Resolving conflicts...
Removing 542 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr5:134287223-134291000(105612:105621)
q-value = 3.7367e-12 & residual q-value = 3.7367e-12
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr5:1298226-1300241(91509:91511)
q-value = 8.1416e-05 & residual q-value = 0.0004807
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr5:40757919-40770415(95685:95686)
q-value = 0.0074373 & residual q-value = 0.030987
Finding peaks on chromosome 6
Removing 141 segments from data
Removing 293 segments from data
Removing 63 segments from data
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr6:19156789-19329929(112748:112763)
q-value = 5.4572e-06 & residual q-value = 5.4572e-06
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr6:63983764-63985744(116880:116881)
q-value = 0.043602 & residual q-value = 0.043602
Finding peaks on chromosome 7
Removing 329 segments from data
Removing 432 segments from data
Removing 53 segments from data
Resolving conflicts...
Removing 193 segments from data
Resolving conflicts...
Removing 48 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 4 on chromosome
Amplification peak at chr7:55135436-55161777(133704:133707)
q-value = 2.1778e-22 & residual q-value = 9.286e-20
Computing score for peak 2 of 4 on chromosome
Amplification peak at chr7:99895507-99944463(137683:137686)
q-value = 0.002451 & residual q-value = 0.002451
Computing score for peak 3 of 4 on chromosome
Amplification peak at chr7:38267001-38275001(131674:131684)
q-value = 0.00029371 & residual q-value = 0.0037367
Computing score for peak 4 of 4 on chromosome
Amplification peak at chr7:6339904-6417173(128670:128673)
q-value = 0.02715 & residual q-value = 0.12734
Finding peaks on chromosome 8
Removing 262 segments from data
Removing 604 segments from data
Removing 925 segments from data
Resolving conflicts...
Removing 66 segments from data
Resolving conflicts...
Removing 90 segments from data
Resolving conflicts...
Removing 42 segments from data
Resolving conflicts...
{Warning: Arbitrated peel-off has shifted peak!} 
> In identify_peaks_by_arbitration at 279
  In run_focal_gistic at 246
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Removing 54 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 6 on chromosome
Amplification peak at chr8:38258001-38269367(148154:148157)
q-value = 2.8085e-19 & residual q-value = 1.2584e-11
Computing score for peak 2 of 6 on chromosome
Amplification peak at chr8:128718478-128800579(159850:159863)
q-value = 2.0888e-13 & residual q-value = 7.6826e-07
Computing score for peak 3 of 6 on chromosome
Amplification peak at chr8:101139346-101187827(156006:156011)
q-value = 1.1099e-10 & residual q-value = 2.7991e-09
Computing score for peak 4 of 6 on chromosome
Amplification peak at chr8:42094241-42099381(148931:148932)
q-value = 2.5685e-07 & residual q-value = 0.0059057
Computing score for peak 5 of 6 on chromosome
Amplification peak at chr8:47464055-47471000(149067:149068)
q-value = 6.2447e-05 & residual q-value = 0.057112
Computing score for peak 6 of 6 on chromosome
Amplification peak at chr8:37392166-37544141(147937:147976)
q-value = 3.2749e-15 & residual q-value = 0.034725
Finding peaks on chromosome 9
Removing 307 segments from data
Removing 267 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr9:15461445-15477239(162986:162991)
q-value = 0.0044349 & residual q-value = 0.0044349
Finding peaks on chromosome 10
Removing 166 segments from data
Removing 276 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr10:8042799-8049268(173597:173602)
q-value = 0.061731 & residual q-value = 0.061731
Finding peaks on chromosome 11
Removing 682 segments from data
Removing 128 segments from data
Removing 171 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr11:69490740-69495682(194720:194721)
q-value = 6.1722e-53 & residual q-value = 6.1722e-53
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr11:2087372-2087436(187063:187064)
q-value = 0.025874 & residual q-value = 0.025874
Finding peaks on chromosome 12
Removing 766 segments from data
Removing 212 segments from data
Removing 58 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr12:69219805-69238680(210987:210988)
q-value = 4.6818e-20 & residual q-value = 4.6818e-20
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr12:25253035-25292070(205815:205816)
q-value = 1.0283e-05 & residual q-value = 1.0283e-05
Finding peaks on chromosome 13
Removing 401 segments from data
Removing 51 segments from data
Resolving conflicts...
Removing 83 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr13:73634651-73651505(224242:224249)
q-value = 0.048069 & residual q-value = 0.060809
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr13:111086441-111193180(228620:228635)
q-value = 0.095809 & residual q-value = 0.21304
Finding peaks on chromosome 14
Removing 424 segments from data
Removing 321 segments from data
Resolving conflicts...
Removing 112 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr14:21954864-22000000(229164:229169)
q-value = 1.8357e-06 & residual q-value = 8.2395e-05
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr14:36263093-36276329(231137:231140)
q-value = 4.0015e-05 & residual q-value = 0.00022668
Finding peaks on chromosome 15
Computing background score...
Finding peaks on chromosome 16
Removing 81 segments from data
Removing 83 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr16:24753093-24761785(249662:249663)
q-value = 0.030514 & residual q-value = 0.030514
Finding peaks on chromosome 17
Removing 151 segments from data
Removing 144 segments from data
Resolving conflicts...
Removing 216 segments from data
Resolving conflicts...
Removing 45 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr17:37887763-37890488(258776:258779)
q-value = 2.8846e-11 & residual q-value = 5.1256e-09
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr17:25967660-25997547(256948:256955)
q-value = 0.01793 & residual q-value = 0.04659
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr17:67186137-67212102(262199:262206)
q-value = 0.03954 & residual q-value = 0.097398
Finding peaks on chromosome 18
Removing 245 segments from data
Removing 94 segments from data
Removing 176 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr18:20541681-20615555(265045:265054)
q-value = 0.022619 & residual q-value = 0.022619
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr18:2839582-2849617(263412:263415)
q-value = 0.097398 & residual q-value = 0.097398
Finding peaks on chromosome 19
Removing 174 segments from data
Removing 51 segments from data
Resolving conflicts...
Removing 47 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr19:39283886-39286545(274911:274912)
q-value = 1.4362e-06 & residual q-value = 2.5728e-05
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr19:32699621-32701622(274075:274078)
q-value = 2.5728e-05 & residual q-value = 0.034725
Finding peaks on chromosome 20
Removing 307 segments from data
Removing 168 segments from data
Resolving conflicts...
{Warning: Arbitrated peel-off has shifted peak!} 
> In identify_peaks_by_arbitration at 279
  In run_focal_gistic at 246
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Removing 47 segments from data
Resolving conflicts...
Removing 39 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr20:30161800-30181064(279913:279916)
q-value = 7.3965e-08 & residual q-value = 6.9585e-05
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr20:52193118-52202960(283309:283312)
q-value = 7.2771e-05 & residual q-value = 0.0034007
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr20:33078988-33108231(280381:280384)
q-value = 3.4227e-06 & residual q-value = 0.049583
Finding peaks on chromosome 21
Computing background score...
Finding peaks on chromosome 22
Removing 58 segments from data
Removing 62 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr22:25392661-25409000(288732:288733)
q-value = 0.23376 & residual q-value = 0.23376
Finding peaks on chromosome 23
Removing 100 segments from data
Removing 164 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chrX:58264840-58272131(295414:295421)
q-value = 0.1166 & residual q-value = 0.1166
Finding peaks on chromosome 1
Removing 150 segments from data
Removing 257 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr1:25527888-25531000(2137:2140)
q-value = 0.11313 & residual q-value = 0.11313
Finding peaks on chromosome 2
Removing 466 segments from data
Removing 69 segments from data
Resolving conflicts...
Removing 154 segments from data
Computing background score...
Computing score for peak 1 of 2 on chromosome
Deletion peak at chr2:141919802-141924898(38292:38293)
q-value = 0.010987 & residual q-value = 0.016249
Computing score for peak 2 of 2 on chromosome
Deletion peak at chr2:241321373-241358304(49475:49482)
q-value = 0.057713 & residual q-value = 0.16868
Finding peaks on chromosome 3
Removing 114 segments from data
Removing 232 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr3:61026000-61049000(55611:55623)
q-value = 0.052201 & residual q-value = 0.052201
Finding peaks on chromosome 4
Removing 128 segments from data
Removing 146 segments from data
Resolving conflicts...
Removing 123 segments from data
Computing background score...
Computing score for peak 1 of 2 on chromosome
Deletion peak at chr4:182187397-182300360(90958:90969)
q-value = 0.12038 & residual q-value = 0.18097
Computing score for peak 2 of 2 on chromosome
Deletion peak at chr4:91809001-91830000(80565:80568)
q-value = 0.16868 & residual q-value = 0.18927
Finding peaks on chromosome 5
Removing 315 segments from data
Removing 37 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr5:59519555-59536000(97674:97675)
q-value = 0.20034 & residual q-value = 0.20034
Finding peaks on chromosome 6
Computing background score...
Finding peaks on chromosome 7
Computing background score...
Finding peaks on chromosome 8
Removing 96 segments from data
Removing 43 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr8:3659101-3666249(144550:144552)
q-value = 0.0011594 & residual q-value = 0.0011594
Finding peaks on chromosome 9
Removing 180 segments from data
Removing 38 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr9:21973950-21975055(164041:164042)
q-value = 7.6904e-63 & residual q-value = 7.6904e-63
Finding peaks on chromosome 10
Computing background score...
Finding peaks on chromosome 11
Removing 154 segments from data
Removing 36 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr11:109306019-109393943(200132:200141)
q-value = 0.2218 & residual q-value = 0.2218
Finding peaks on chromosome 12
Computing background score...
Finding peaks on chromosome 13
Removing 311 segments from data
Removing 23 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr13:49142806-49164127(221491:221492)
q-value = 0.0034854 & residual q-value = 0.0034854
Finding peaks on chromosome 14
Computing background score...
Finding peaks on chromosome 15
Computing background score...
Finding peaks on chromosome 16
Removing 75 segments from data
Removing 42 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr16:6609001-6611000(248417:248418)
q-value = 0.0082178 & residual q-value = 0.0082178
Finding peaks on chromosome 17
Removing 42 segments from data
Removing 24 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr17:11849598-11856735(256060:256061)
q-value = 0.16492 & residual q-value = 0.16492
Finding peaks on chromosome 18
Removing 181 segments from data
Removing 46 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr18:58916717-58955001(270341:270342)
q-value = 0.14465 & residual q-value = 0.14465
Finding peaks on chromosome 19
Removing 47 segments from data
Removing 33 segments from data
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr19:1175209-1199468(271889:271894)
q-value = 0.019679 & residual q-value = 0.019679
Finding peaks on chromosome 20
Computing background score...
Finding peaks on chromosome 21
Computing background score...
Finding peaks on chromosome 22
Computing background score...
Finding peaks on chromosome 23
Computing background score...
Saving peak regions...
Computing permuted score distributions...
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Saving permuted score files...
Computing wide peak regions...
Running Regbounder at confidence level: 99%
     1

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
     2

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
Amplification wide peak at chr1:160855541-161112063(14550:14589)
Amplification wide peak at chr1:39906195-40536420(3820:3887)
Amplification wide peak at chr1:150298523-152289365(13443:13478)
Amplification wide peak at chr2:97490547-98277749(33954:33980)
Amplification wide peak at chr2:11396353-11483732(25520:25543)
Amplification wide peak at chr2:170619492-170755878(41663:41688)
Amplification wide peak at chr3:11718597-12771246(50423:50542)
Amplification wide peak at chr3:169312023-170135445(67635:67766)
Amplification wide peak at chr4:10187381-10366619(71229:71253)
Amplification wide peak at chr4:73041551-75032598(78269:78524)
Amplification wide peak at chr5:134287000-134291001(105609:105622)
Amplification wide peak at chr5:924315-2076204(91491:91561)
Amplification wide peak at chr5:40667164-40845372(95677:95711)
Amplification wide peak at chr6:18662854-23785507(112661:112764)
Amplification wide peak at chr6:63862476-64364508(116859:116942)
Amplification wide peak at chr7:54972095-55396178(133667:133742)
Amplification wide peak at chr7:96297122-103607236(137306:138039)
Amplification wide peak at chr7:38262000-38435240(131667:131685)
Amplification wide peak at chr7:740493-20618137(128128:129850)
Amplification wide peak at chr8:38151875-38465965(148127:148188)
Amplification wide peak at chr8:128564878-128932358(159821:159890)
Amplification wide peak at chr8:101105701-101368958(155991:156058)
Amplification wide peak at chr8:41337663-42805030(148778:149041)
Amplification wide peak at chr8:42933758-47886413(149059:149153)
Amplification wide peak at chr8:36678000-37754963(147750:148026)
Amplification wide peak at chr9:13774653-15927105(162773:163074)
Amplification wide peak at chr10:1357138-15209760(173088:174300)
Amplification wide peak at chr11:69437719-69495683(194707:194722)
Amplification wide peak at chr11:2063096-2087437(187050:187065)
Amplification wide peak at chr12:69183508-69254615(210972:211001)
Amplification wide peak at chr12:24883086-25744028(205811:205873)
Amplification wide peak at chr13:73619716-73700280(224227:224258)
Amplification wide peak at chr13:92200339-113970604(226462:228898)
Amplification wide peak at chr14:21715000-22029001(229121:229184)
Amplification wide peak at chr14:34929110-37204581(230980:231265)
Amplification wide peak at chr16:23879423-25398614(249593:249720)
Amplification wide peak at chr17:37822289-37900662(258763:258784)
Amplification wide peak at chr17:25813473-26379001(256909:257032)
Amplification wide peak at chr17:59367675-78581724(261417:263207)
Amplification wide peak at chr18:20044605-21245587(264968:265165)
Amplification wide peak at chr18:2548123-4316865(263404:263613)
Amplification wide peak at chr19:39279383-39458591(274908:274931)
Amplification wide peak at chr19:24048931-32816981(274042:274135)
Amplification wide peak at chr20:30073780-30328485(279900:279939)
Amplification wide peak at chr20:52038600-52562618(283301:283361)
Amplification wide peak at chr20:32690189-33521131(280330:280477)
Amplification wide peak at chr22:17433020-27185094(288408:288904)
Amplification wide peak at chrX:58104852-58310388(295397:295425)
Deletion wide peak at chr1:25402240-25727000(2125:2142)
Deletion wide peak at chr2:141790433-141944634(38259:38302)
Deletion wide peak at chr2:219477654-242457253(47091:49627)
Deletion wide peak at chr3:59581001-61076001(55610:55630)
Deletion wide peak at chr4:177634568-188731001(90526:91490)
Deletion wide peak at chr4:91477820-92188001(80478:80668)
Deletion wide peak at chr5:59251000-59577001(97581:97692)
Deletion wide peak at chr8:3505239-3732388(144549:144561)
Deletion wide peak at chr9:21971932-21979761(164038:164045)
Deletion wide peak at chr11:104216085-124274181(199533:202006)
Deletion wide peak at chr13:49116364-49265163(221470:221503)
Deletion wide peak at chr16:6480816-7366868(248340:248432)
Deletion wide peak at chr17:11746064-11951286(256053:256078)
Deletion wide peak at chr18:58756254-58960002(270322:270349)
Deletion wide peak at chr19:412751-2772698(271810:272037)
Saving final_regions...
Writing output files...
Writing all_lesions file to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/PANCAN12-TP/6154986/all_lesions.conf_99.txt
Adding gene annotations
Writing output gene table files
Writing q value, p value and amp/del score file
About to save Raw_copy_number figure file
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 470
  In gistic_plots at 214
  In run_focal_gistic at 359
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 470
  In gistic_plots at 214
  In run_focal_gistic at 359
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Focal GISTIC completed without error
Running broad analysis...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Calculating median of arm values...
Finding median of arms on chromosome:
     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

    17

    18

    19

    20

    21

    22

    23

Finding median of arms on chromosome:
     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

    17

    18

    19

    20

    21

    22

    23

     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

    17

    18

    19

    20

    21

    22

    23

    24

    25

    26

    27

    28

    29

    30

    31

    32

    33

    34

    35

    36

    37

    38

    39

    40

Writing arm medians file...
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Reducing all data to genes
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
        1000

        2000

        3000

        4000

        5000

        6000

        7000

        8000

        9000

       10000

       11000

       12000

       13000

       14000

       15000

       16000

       17000

       18000

       19000

       20000

       21000

       22000

       23000

       24000

Reducing focal data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
        1000

        2000

        3000

        4000

        5000

        6000

        7000

        8000

        9000

       10000

       11000

       12000

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       20000

       21000

       22000

       23000

       24000

Reducing broad data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
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Calculating sample cutoffs...
Reading file using format:%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f
Writing sample cutoff file...
Thresholding data...
Reading file using format:%s%f%f
Reading file using format:%s%s%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f
Writing thresholded gene calls...
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Finished writing gene tables.
GISTIC2 run completed!
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
[DEBUG] sys.argv[1] (exe_dir) = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/
[DEBUG] sys.argv[2] (Matlab Executable) = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/call_gistic2
[DEBUG] LD_LIBRARY_PATH = .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64
[DEBUG] MCR_CACHE_ROOT = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/PANCAN12-TP/6154986
[DEBUG] Matlab command = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/call_gistic2 . 4 /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/segmentationfile.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/PANCAN12-TP/6154890/markersfile.txt /xchip/cga/reference/gistic2/hg19_with_miR_20120227.mat /xchip/cga/reference/gistic2/CNV.hg19.bypos.111213.txt 0.3 0.3 2 0.5 0 0.99 10 1 10000 0 mean /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/126/version.txt
