Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
mirfile	PRAD-TP.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_PRAD-TP.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	stderr.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
mirfile	PRAD-TP.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_PRAD-TP.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	stdout.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
mirfile	PRAD-TP.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_PRAD-TP.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	PRAD-TP.miRseq_mature_PKM_log2.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
mirmapfile	miRbase_v19_mature_mimat.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	stderr.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
mirmapfile	miRbase_v19_mature_mimat.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	stdout.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
mirmapfile	miRbase_v19_mature_mimat.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:8	miRseq_Mature_Preprocess_2014011500	PRAD-TP.miRseq_mature_PKM_log2.txt	miRseq_mature	Level_4	txt	gdac.broadinstitute.org_PRAD-TP.miRseq_Mature_Preprocess.Level_4.2014011500.0.0	yes
