
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/6164996/SKCM-TM.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/SKCM-TM/6154803/SKCM-TM.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=SKCM-TM", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SKCM-TM"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/SKCM-TM/6154803/SKCM-TM.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/6164996/SKCM-TM.mergedcluster.txt"

nPatients in clinical file=260, in cluster file=292, common to both=260
[1]  10 260
[1] "CN_CNMF"
[1] 3
 1  2  3 
95 73 92 
 1  2  3 
95 73 92 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 65  94 101 
  1   2   3 
 65  94 101 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
46 53 27 38 
 1  2  3  4 
46 53 27 38 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
65 56 43 
 1  2  3 
65 56 43 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
89 71 98 
 1  2  3 
89 71 98 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 71 111  76 
  1   2   3 
 71 111  76 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
 69 104  78 
  1   2   3 
 69 104  78 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 29  25  69 128 
  1   2   3   4 
 29  25  69 128 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
86 93 72 
 1  2  3 
86 93 72 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3  4 
25 98 81 47 
 1  2  3  4 
25 98 81 47 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "DAYSTOSUBMITTEDSPECIMENDX"             
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "NEOPLASM.DISEASESTAGE"                 
 [8] "PATHOLOGY.T.STAGE"                     
 [9] "PATHOLOGY.N.STAGE"                     
[10] "PATHOLOGY.M.STAGE"                     
[11] "MELANOMA.ULCERATION"                   
[12] "MELANOMA.PRIMARY.KNOWN"                
[13] "BRESLOW.THICKNESS"                     
[14] "DCCUPLOADDATE"                         
[15] "GENDER"                                
[16] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[17] "RADIATIONTHERAPY"                      
[18] "RADIATIONS.RADIATION.REGIMENINDICATION"
[19] "GLEASON_SCORE"                         
[20] "PSA_VALUE"                             
[21] "DAYS_TO_PSA"                           
[22] "BATCHNUMBER"                           

Input Data has 22 rows and 260 columns.

[1] "Batch" "22"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 
          NA           NA         3408           NA           NA         3687 
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2J7 
          NA           NA         2326         2512           NA           NA 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD 
          NA           NA         3514           NA         2126           NA 
TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JH TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JN 
        1483           NA          951           NA         4748         1709 
TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C1 TCGA-D3-A3C3 TCGA-D3-A3C6 
        1547         1371         3516           NA           NA           NA 
TCGA-D3-A3C7 TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
        1007         1038         5052         2644           NA           NA 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E 
          NA           NA         3151          819          653         4923 
TCGA-D3-A51F TCGA-D3-A51G TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A51N 
        1329           NA         1221         4012          559          305 
TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GR 
        1572          458         3373         4140         4195         5052 
TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
         226         3808         4609         1663          111          194 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
         345           98         1487           NA         3564           NA 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
        5926           NA           NA         3265         1861           NA 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
          NA          713           NA          870           NA         6553 
TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EB-A5KH TCGA-EB-A5UL TCGA-EB-A5UN 
         477           28          309          543          108         1182 
TCGA-EB-A5VV TCGA-EE-A17X TCGA-EE-A17Y TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 
         193           NA           NA           NA           NA           NA 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20C 
          NA           NA           NA           NA         3335           NA 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A20I TCGA-EE-A29A TCGA-EE-A29B TCGA-EE-A29C 
        2399           NA           NA           NA         2452         1455 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
          NA         1205           NA          979           NA         1349 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
          NA         1716         1136          440         1700        10523 
TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
          NA         5217           NA           NA         2401          743 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
          NA         1787         1446         1315         9567         4134 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
        5536          686         2717         1664         1673         2296 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
        2766         3101           NA          435         1691          595 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
        2042           NA         3931           NA           NA           NA 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
        4403         6175           NA           NA         7562           NA 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
        3150         4150         1265         1620         3781         3733 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
         786          112          813           NA          714           NA 
TCGA-EE-A3J5 TCGA-EE-A3J8 TCGA-EE-A3JA TCGA-EE-A3JH TCGA-EE-A3JI TCGA-ER-A193 
          NA           NA           NA         3095         4504           NA 
TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19B 
          NA           NA           NA           NA         2365           NA 
TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H 
          NA           NA           NA           NA         8180           NA 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A19P 
          NA           NA           NA         1340           NA           NA 
TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2ND TCGA-ER-A2NF 
          NA         1133         2433           NA           NA          497 
TCGA-ER-A2NG TCGA-ER-A2NH TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
         951          975           NA         2443         1010         2448 
TCGA-FR-A3YO TCGA-FR-A44A TCGA-FR-A69P TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
          NA         5298          148           NA           NA           NA 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
          NA           NA         1225           NA           NA           NA 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
          NA           NA         3080           NA           NA           NA 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
        4525         1617           NA         1505           NA           NA 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4F8 TCGA-FS-A4F9 
        2366           NA           NA           NA           NA          378 
TCGA-FS-A4FB TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
          NA         1504         2369            6          699         1446 
TCGA-FW-A3TV TCGA-FW-A5DY TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A262 
          NA           73          301          220           NA         3664 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
          NA         2577           NA           NA           NA           NA 
TCGA-GN-A26D TCGA-GN-A4U8 
        1204         1410 
Variable 1:'AGE':	nDistinctValues=66,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=121,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=133,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=208,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'NEOPLASM.DISEASESTAGE':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.T.STAGE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.N.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.M.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MELANOMA.ULCERATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MELANOMA.PRIMARY.KNOWN':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BRESLOW.THICKNESS':	nDistinctValues=106,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=28,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
 [3] "NEOPLASM.DISEASESTAGE"   "PATHOLOGY.T.STAGE"      
 [5] "PATHOLOGY.N.STAGE"       "PATHOLOGY.M.STAGE"      
 [7] "MELANOMA.ULCERATION"     "MELANOMA.PRIMARY.KNOWN" 
 [9] "BRESLOW.THICKNESS"       "GENDER"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 260 columns, 2 survival variables, and 10 non-survival variables.
AGE, nv=66, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
NEOPLASM.DISEASESTAGE, nv=14, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T0 T1 T2 T3 T4 
21 30 57 50 53 
[1] "table(vv)"
vv
T0+T1    T2    T3    T4 
   51    57    50    53 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T0 T1 T2 T3 T4 
21 30 57 50 53 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T0+T1    T2    T3    T4 
   51    57    50    53 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
134  48  31  31 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
134  48  31  31 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
134  48  31  31 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
134  48  31  31 
PATHOLOGY.M.STAGE, nv=5, binary=FALSE, numeric=FALSE
MELANOMA.ULCERATION, nv=2, binary=FALSE, numeric=FALSE
MELANOMA.PRIMARY.KNOWN, nv=2, binary=FALSE, numeric=FALSE
BRESLOW.THICKNESS, nv=106, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 43 48
  subtype2 31 35
  subtype3 53 37
subtype1 subtype2 subtype3 
      91       66       90 
subtype1 subtype2 subtype3 
      48       35       37 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1QB TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3ML 
       16.47         8.52        68.09        15.25        61.38         6.28 
TCGA-D3-A3MO TCGA-D3-A3MU TCGA-D3-A51E TCGA-D3-A51K TCGA-D3-A51R TCGA-D3-A5GN 
        9.30        13.55        80.22        17.72        20.48        52.04 
TCGA-D3-A5GO TCGA-D3-A5GU TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1IA 
       47.87        23.11        48.79        35.80        39.19         4.93 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EB-A5KH TCGA-EE-A17Z 
        6.64         7.00         0.20         0.20         0.13         6.31 
TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20I 
        8.12         1.12         5.13         4.27        36.07         1.18 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S 
       11.15        38.63         1.08        12.03         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GJ TCGA-EE-A2GN TCGA-EE-A2GR 
        2.43         9.67        39.39        19.43        33.83         1.15 
TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MN 
       13.02         8.68         9.53        14.53       111.78        25.08 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3JA TCGA-ER-A197 
       27.12        23.05       122.73         3.68        22.22        12.95 
TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A19N 
        3.81         3.52        11.11       114.15         4.18        42.84 
TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
        9.57        13.05         9.04         6.58         1.71         5.95 
TCGA-FR-A69P TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1ZA TCGA-FS-A1ZE 
        4.87        64.47         3.45        23.80         7.27        19.53 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZT 
        7.17        30.84        12.92        12.89        47.38        40.64 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FS-A4FD 
        8.68         0.82         5.23        28.73         5.98         2.27 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
        0.20         0.13        31.33        10.09        16.21        15.39 
TCGA-GN-A26D 
       14.70 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JC 
      111.09        32.55        70.16        22.55        10.26        69.90 
TCGA-D3-A2JK TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C7 TCGA-D3-A3CE TCGA-D3-A3MV 
        6.35        56.19        45.07        33.11        13.32         5.39 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A5GL TCGA-D3-A5GR TCGA-D3-A5GS TCGA-D9-A3Z3 
       41.13         8.88        95.38         2.01         6.97         2.86 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       51.12        13.68         9.99        44.52        36.69        25.15 
TCGA-DA-A3F5 TCGA-EE-A17Y TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C TCGA-EE-A29H 
       17.56        10.55         5.13         9.24        37.97         4.41 
TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GM TCGA-EE-A2GO 
        6.48         8.68         8.09         8.94        28.31        30.84 
TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MH TCGA-EE-A2MP TCGA-EE-A3AE 
        5.39        98.27         2.70         7.96        26.99         2.37 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3JI TCGA-ER-A193 TCGA-ER-A19B TCGA-ER-A19E 
       13.81        15.95        33.60        31.40        25.18        11.90 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A2ND TCGA-FR-A44A TCGA-FS-A1YY 
       34.88        12.99        28.64         1.87        85.74        11.05 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZQ 
       14.24         7.30        20.38         8.22        11.08         8.68 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-GF-A4EO TCGA-GN-A26A 
        8.81        49.15         3.22         7.36         7.23        12.16 

$subtype3
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QA TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 
       98.76        28.08        31.40        85.32         8.38        21.14 
TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JH 
       88.50        68.25        11.41        30.87         7.50        25.38 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CF 
       77.00        49.25        99.55        34.13        82.03        24.00 
TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51T TCGA-D9-A3Z1 TCGA-DA-A1I0 
      103.59        42.71        15.09        13.94         4.01        10.03 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A5UN TCGA-EE-A17X TCGA-EE-A182 
       22.36        19.36        14.83         0.07        11.57         1.35 
TCGA-EE-A183 TCGA-EE-A20C TCGA-EE-A29A TCGA-EE-A29B TCGA-EE-A29G TCGA-EE-A29M 
       12.20         4.34         7.96         9.90         8.55        27.12 
TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GC 
        9.47         8.12        11.31        25.28        23.90        10.13 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL 
       17.98        34.92        21.17         3.91        16.01        10.88 
TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
        9.67         8.84         6.21        47.51        29.46        44.22 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU 
       63.42       111.91        56.02        21.60        29.65         5.56 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3J5 TCGA-EE-A3J8 TCGA-EE-A3JH TCGA-ER-A195 
      124.31        25.84        21.60        16.14        13.94        18.64 
TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19P TCGA-ER-A19S TCGA-ER-A1A1 
       38.37         5.72        76.41        34.68        36.07        78.44 
TCGA-ER-A2NC TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZP 
       12.00        12.62        11.74        15.52         3.39        52.11 
TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
       27.39        53.82        14.20        10.78         6.41         1.02 
TCGA-FW-A5DY TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A4U8 
        0.43         9.90        15.35        24.85        84.72        11.84 

subtype1 subtype2 subtype3 
    0.13     1.87     0.07 
subtype1 subtype2 subtype3 
  122.73   111.09   124.31 
subtype1 subtype2 subtype3 
  11.150   13.155   19.000 
[1] "0.1 - 122.7 (11.2)" "1.9 - 111.1 (13.2)" "0.1 - 124.3 (19.0)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype3"
D1V2, survival
          sevent
clus2       0  1
  subtype1 45 49
  subtype2 33 36
  subtype3 54 37
subtype1 subtype2 subtype3 
      94       69       91 
subtype1 subtype2 subtype3 
      49       36       37 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1QB TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3ML 
       16.57        16.67        82.59        58.03        86.93        13.84 
TCGA-D3-A3MO TCGA-D3-A3MU TCGA-D3-A51E TCGA-D3-A51K TCGA-D3-A51R TCGA-D3-A5GN 
        9.30        26.93       161.85        18.38        51.68       136.11 
TCGA-D3-A5GO TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV 
      137.92       125.19       151.53         3.65         6.38        48.89 
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A44Q 
       36.03       194.83        65.92        68.09        10.49         0.92 
TCGA-EB-A44R TCGA-EB-A5KH TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 
       10.16        17.85         8.65        94.98        33.73        68.15 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L 
        4.93       109.64        13.55        13.97        39.62         2.56 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GB 
       56.42        14.47        55.89        25.87        39.25        47.54 
TCGA-EE-A2GJ TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2MD 
       89.33        90.94        14.30        55.59        67.13        47.28 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB 
      204.62       144.76        47.54       136.44        41.59       122.73 
TCGA-EE-A3AD TCGA-EE-A3JA TCGA-ER-A197 TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19F 
        3.68        53.19        13.91        48.89        12.59        26.37 
TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A3ES 
      268.93         6.41        44.05        50.89        16.34       247.04 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FR-A69P TCGA-FS-A1YW TCGA-FS-A1YX 
       80.32        33.21        80.48         4.87       216.92        48.59 
TCGA-FS-A1Z0 TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
      202.62        27.68        40.27         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       23.93       101.26        53.16        26.56        27.06        27.02 
TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 
       28.73        26.73        77.88         0.20        47.54       117.93 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       10.09        64.41        62.76        39.58 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JC 
      112.04       112.54        71.80        31.59        43.40        69.90 
TCGA-D3-A2JK TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C7 TCGA-D3-A3CE TCGA-D3-A3MV 
       12.10        56.19        45.07        33.11        60.23        21.47 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A5GL TCGA-D3-A5GR TCGA-D3-A5GS TCGA-D9-A149 
      131.90        10.03       110.89       166.09         7.43        54.67 
TCGA-D9-A3Z3 TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
        3.22       117.17       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EB-A5UL TCGA-EE-A17Y TCGA-EE-A20F TCGA-EE-A20H 
       53.92       215.44         3.55        27.22        78.87       168.26 
TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A29X TCGA-EE-A2A6 
       47.84        32.19       345.96       171.52        17.92        58.75 
TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MH 
       75.48       101.95        13.87       129.24        28.80        16.96 
TCGA-EE-A2MP TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3JI 
      248.61        26.73        13.81        23.47       138.77       148.08 
TCGA-ER-A193 TCGA-ER-A19B TCGA-ER-A19E TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M 
       31.40        98.40        13.02       152.35       131.08        61.05 
TCGA-ER-A2ND TCGA-FR-A44A TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZC 
       23.34       174.18       228.59        20.91         7.76       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F2 
       53.52        15.45       133.55        11.41       148.77        50.14 
TCGA-FS-A4F4 TCGA-GF-A4EO TCGA-GN-A26A 
       66.67         7.23        32.48 

$subtype3
TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QA TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 
      121.22        28.08        76.47       103.10        65.49        23.77 
TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JH 
      115.53       168.00        11.87        48.76       113.52        31.27 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CF 
      156.10        50.86       115.59        34.13       166.09        24.53 
TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51T TCGA-D9-A3Z1 TCGA-DA-A1I0 
      103.59        43.69        40.14        15.06        11.34        20.38 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A5UN TCGA-EB-A5VV TCGA-EE-A17X 
       23.44        28.60        15.68        38.86         6.35        29.82 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20C TCGA-EE-A29A TCGA-EE-A29B TCGA-EE-A29G 
       14.70        26.86       151.23        63.32        80.61        72.03 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       44.35        18.58        37.35        46.82        78.94        24.43 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       43.23       314.53       135.91       182.01        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       55.00        19.56        21.67        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MR 
      103.17        96.23       203.01       167.87        43.23       103.56 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3J5 TCGA-EE-A3J8 TCGA-EE-A3JH 
       53.26       124.31        25.84        36.95        34.32       101.75 
TCGA-ER-A195 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19P TCGA-ER-A19S 
       35.44        50.73         9.17        77.75       162.08        37.25 
TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       79.99        44.02        31.27        32.05        28.08        48.85 
TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FC 
       74.73        49.48        77.79       174.84        12.43        49.45 
TCGA-FW-A3R5 TCGA-FW-A5DY TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 
       22.98         2.40         9.90        76.41       120.46        84.72 
TCGA-GN-A4U8 
       46.36 

subtype1 subtype2 subtype3 
    0.20     3.22     2.40 
subtype1 subtype2 subtype3 
  268.93   357.37   314.53 
subtype1 subtype2 subtype3 
  45.665   56.190   48.760 
[1] "0.2 - 268.9 (45.7)" "3.2 - 357.4 (56.2)" "2.4 - 314.5 (48.8)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3"
D1V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 16             1
  subtype2                  9             0
  subtype3                  8             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        18                  59
  subtype2                                        18                  46
  subtype3                                        19                  65
D1V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       1       5        3       11        7         3
  subtype2           6       1       5        3        5        6         3
  subtype3           3       3      11        4        8        3         4
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         5         6        10          4         11         12
  subtype2         2         3        10          1          8         10
  subtype3         6         1        10          6          4         19
          vv
clus       STAGE IV
  subtype1        5
  subtype2        4
  subtype3        3
D1V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    16 21 18 22
  subtype2    20 16 12 11
  subtype3    15 20 20 20
D1V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 49 14 15 10
  subtype2 39 16  8  7
  subtype3 46 18  8 14
D1V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 82  2   1   1   2
  subtype2 67  1   0   0   3
  subtype3 84  1   1   1   0
D1V8, multiclass
D1V9, binary
          cls
clus        0  1
  subtype1 39 24
  subtype2 22 17
  subtype3 37 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   24
  subtype2   22   17
  subtype3   37   23
     clus
vv    subtype1 subtype2 subtype3
  NO        39       22       37
  YES       24       17       23
D1V10, binary
          cls
clus        0  1
  subtype1 11 84
  subtype2 12 61
  subtype3  8 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   84
  subtype2   12   61
  subtype3    8   84
     clus
vv    subtype1 subtype2 subtype3
  NO        11       12        8
  YES       84       61       84
D1V11, continuous
D1V12, binary
          cls
clus        0  1
  subtype1 39 56
  subtype2 31 42
  subtype3 31 61
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   56
  subtype2   31   42
  subtype3   31   61
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       31       31
  MALE         56       42       61

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 24 40
  subtype2 48 41
  subtype3 55 39
subtype1 subtype2 subtype3 
      64       89       94 
subtype1 subtype2 subtype3 
      40       41       39 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A3C7 TCGA-D3-A3CC 
       16.47       111.09        32.55        10.26        33.11        61.38 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51K TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 
       13.32         9.30        17.72        13.68         4.93         7.00 
TCGA-EB-A44R TCGA-EE-A17Y TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20H 
        0.20        10.55         6.31         1.35        36.07         9.24 
TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A29W TCGA-EE-A2A5 TCGA-EE-A2GN TCGA-EE-A2GP 
       11.15         8.84         8.68         9.67        33.83         5.39 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M7 TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A2MT 
        1.15        13.02         2.70        14.53        27.12        23.05 
TCGA-EE-A3AC TCGA-EE-A3JA TCGA-ER-A19B TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19E 
       25.84        22.22        25.18         3.81         3.52        11.90 
TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3ET 
       12.99        12.00         1.87        13.05         9.04         6.58 
TCGA-ER-A3PL TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 
        1.71         4.87         3.45        23.80        14.24         7.30 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR 
        8.22        19.53        12.92        12.89        52.11         8.81 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A4FB TCGA-FS-A4FD 
       49.15        40.64         8.68         0.82         5.98         2.27 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A26D 
        0.20         0.13        16.21        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JK 
        8.52        22.55        31.40        30.87         7.50         6.35 
TCGA-D3-A2JL TCGA-D3-A3C6 TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E 
       77.00        15.25         6.28        13.55         5.39        80.22 
TCGA-D3-A51J TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO 
       41.13        20.48        13.94        95.38        52.04        47.87 
TCGA-D3-A5GS TCGA-D3-A5GU TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I7 
        6.97        23.11        48.79        51.12        39.19        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A180 
       25.15         6.64         0.20         0.13        11.57         8.12 
TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20C TCGA-EE-A20I TCGA-EE-A29A 
        1.12         5.13         4.27         4.34         1.18         7.96 
TCGA-EE-A29B TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S 
        9.90         4.41         1.08        12.03         8.12         9.99 
TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GM 
        8.09        23.90        39.39        10.13        19.43        28.31 
TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       30.84         8.68        98.27       111.78       111.91        56.02 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
       25.08        26.99        21.60         3.68         2.37        13.81 
TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-EE-A3JI TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A19F 
       15.95        16.14        33.60        31.40        38.37        11.11 
TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19J TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY 
      114.15        34.88         4.18         5.95        64.47        11.05 
TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZQ 
        7.27        20.38        11.08         7.17        47.38         8.68 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4F9 
        5.23        53.82         3.22         7.36        28.73        10.78 
TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
        6.41         1.02        24.85        31.33        15.39 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
       70.16        98.76        28.08        68.09        85.32         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JH 
       21.14        88.50        68.25        69.90        11.41        25.38 
TCGA-D3-A2JN TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
       56.19        49.25        45.07        99.55        34.13        82.03 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A5GR 
       24.00       103.59        42.71        15.09         8.88         2.01 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I5 
        4.01         2.86        35.80        10.03         9.99        44.52 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A5UN TCGA-EE-A183 
       22.36        19.36        17.56        14.83         0.07        12.20 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29M TCGA-EE-A29N 
        5.13        37.97        38.63         8.55        27.12         9.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GD 
        6.48         2.43        11.31        25.28         8.94        17.98 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
       34.92        21.17         3.91        16.01        10.88         9.67 
TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
        8.84         6.21        47.51         9.53        29.46        44.22 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
        7.96        63.42        29.65         5.56       124.31       122.73 
TCGA-EE-A3J5 TCGA-EE-A3JH TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A199 TCGA-ER-A19A 
       21.60        13.94        18.64        12.95         5.72        76.41 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A1A1 
       28.64        42.84        34.68         9.57        36.07        78.44 
TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZH 
       12.62        11.74        85.74        15.52         3.39        30.84 
TCGA-FS-A1ZW TCGA-FS-A4F8 TCGA-FW-A5DY TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 
       27.39        14.20         0.43         9.90         7.23        15.35 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A TCGA-GN-A4U8 
       84.72        10.09        12.16        11.84 

subtype1 subtype2 subtype3 
    0.13     0.13     0.07 
subtype1 subtype2 subtype3 
  111.09   114.15   124.31 
subtype1 subtype2 subtype3 
   10.85    13.94    19.00 
[1] "0.1 - 111.1 (10.9)" "0.1 - 114.2 (13.9)" "0.1 - 124.3 (19.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype3"
D2V2, survival
          sevent
clus2       0  1
  subtype1 24 40
  subtype2 49 43
  subtype3 59 39
subtype1 subtype2 subtype3 
      64       92       98 
subtype1 subtype2 subtype3 
      40       43       39 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A3C7 TCGA-D3-A3CC 
       16.57       112.04       112.54        43.40        33.11        86.93 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51K TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 
       60.23         9.30        18.38       176.55        65.92        10.49 
TCGA-EB-A44R TCGA-EE-A17Y TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20H 
       10.16        27.22         8.65        14.70       109.64       168.26 
TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A29W TCGA-EE-A2A5 TCGA-EE-A2GN TCGA-EE-A2GP 
       13.97        14.47       171.52        39.25        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M7 TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A2MT 
       14.30        55.59        28.80       204.62       136.44        41.59 
TCGA-EE-A3AC TCGA-EE-A3JA TCGA-ER-A19B TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19E 
       25.84        53.19        98.40        48.89        12.59        13.02 
TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3ET 
      131.08        44.02        23.34        16.34       247.04        80.32 
TCGA-ER-A3PL TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 
       33.21         4.87        48.59       202.62        20.91         7.76 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR 
       53.52        40.27        47.38        23.93        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A4FB TCGA-FS-A4FD 
      148.77        53.16        26.56        27.06        26.73        77.88 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A26D 
        0.20        47.54        64.41        39.58 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JK 
       16.67        31.59        76.47        48.76       113.52        12.10 
TCGA-D3-A2JL TCGA-D3-A3C6 TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E 
      156.10        58.03        13.84        26.93        21.47       161.85 
TCGA-D3-A51J TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO 
      131.90        51.68        15.06       110.89       136.11       137.92 
TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY 
        7.43       125.19       151.53         6.38        48.89       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EB-A5KH 
      194.83        61.18        53.92        68.09         0.92        17.85 
TCGA-EE-A17X TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20C 
       29.82        94.98        33.73        68.15         4.93       151.23 
TCGA-EE-A20I TCGA-EE-A29A TCGA-EE-A29B TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P 
       13.55        63.32        80.61        32.19         2.56        56.42 
TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC 
       37.35        55.89        17.92        24.43        47.54        43.23 
TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MK 
       89.33        75.48       101.95        67.13       129.24       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A3AD 
      203.01       167.87        47.54       248.61        43.23         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3J8 TCGA-EE-A3JI 
       26.73        13.81        23.47       138.77        34.32       148.08 
TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19J 
       31.40        50.73        26.37       268.93       152.35         6.41 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZF 
       80.48       216.92       228.59        27.68       357.37        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
        9.70       101.26       133.55        27.02        77.79        50.14 
TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A262 
       66.67        28.73        12.43        49.45        22.98       120.46 
TCGA-GN-A264 TCGA-GN-A268 
      117.93        62.76 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
       71.80       121.22        28.08        82.59       103.10        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JH 
       23.77       115.53       168.00        69.90        11.87        31.27 
TCGA-D3-A2JN TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
       56.19        50.86        45.07       115.59        34.13       166.09 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A5GR 
       24.53       103.59        43.69        40.14        10.03       166.09 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 
       54.67         3.65        11.34         3.22        36.03        20.38 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
       35.93       107.34        23.44        28.60       215.44        15.68 
TCGA-EB-A5UL TCGA-EB-A5UN TCGA-EB-A5VV TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C 
        3.55        38.86         6.35        26.86        78.87        47.84 
TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A29V 
       39.62        72.03        44.35        18.58       345.96        25.87 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       46.82        78.94        58.75       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 
       22.55        54.71        55.00        19.56        21.67        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ 
       61.51        47.28       103.27       103.17        16.96        96.23 
TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3J5 TCGA-EE-A3JH 
      103.56        53.26       124.31       122.73        36.95       101.75 
TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19M TCGA-ER-A19N 
       35.44        13.91         9.17        77.75        61.05        44.05 
TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A1A1 TCGA-ER-A2NG TCGA-ER-A2NH 
      162.08        50.89        37.25        79.99        31.27        32.05 
TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZH TCGA-FS-A1ZW TCGA-FS-A4F8 
      174.18        28.08        48.85        32.71        49.48       174.84 
TCGA-FW-A5DY TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
        2.40         9.90         7.23        76.41        84.72        10.09 
TCGA-GN-A26A TCGA-GN-A4U8 
       32.48        46.36 

subtype1 subtype2 subtype3 
    0.20     0.92     2.40 
subtype1 subtype2 subtype3 
  247.04   357.37   345.96 
subtype1 subtype2 subtype3 
  40.930   54.905   47.050 
[1] "0.2 - 247.0 (40.9)" "0.9 - 357.4 (54.9)" "2.4 - 346.0 (47.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3"
D2V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 15             1
  subtype2                 14             0
  subtype3                  4             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        15                  34
  subtype2                                        22                  58
  subtype3                                        18                  78
D2V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       2       4        1        7        8         2
  subtype2           6       1       6        6        9        5         5
  subtype3           3       2      11        3        8        3         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         4         4         6          2          6         11
  subtype2         7         5         8          6          7         12
  subtype3         2         1        16          3         10         18
          vv
clus       STAGE IV
  subtype1        3
  subtype2        3
  subtype3        6
D2V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     7 20 11 15
  subtype2    19 18 19 21
  subtype3    25 19 20 17
D2V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 36 14  6  5
  subtype2 56 10 14 10
  subtype3 42 24 11 16
D2V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 57  2   1   0   0
  subtype2 88  1   0   1   2
  subtype3 88  1   1   1   3
D2V8, multiclass
D2V9, binary
          cls
clus        0  1
  subtype1 17 18
  subtype2 42 26
  subtype3 39 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   18
  subtype2   42   26
  subtype3   39   20
     clus
vv    subtype1 subtype2 subtype3
  NO        17       42       39
  YES       18       26       20
D2V10, binary
          cls
clus        0  1
  subtype1  7 58
  subtype2  8 86
  subtype3 16 85
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   58
  subtype2    8   86
  subtype3   16   85
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8       16
  YES       58       86       85
D2V11, continuous
D2V12, binary
          cls
clus        0  1
  subtype1 24 41
  subtype2 39 55
  subtype3 38 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   41
  subtype2   39   55
  subtype3   38   63
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       39       38
  MALE         41       55       63

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 24 20
  subtype2 22 28
  subtype3 11 14
  subtype4 16 20
subtype1 subtype2 subtype3 subtype4 
      44       50       25       36 
subtype1 subtype2 subtype3 subtype4 
      20       28       14       20 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JO TCGA-D3-A3CB 
       16.47        70.16        98.76         8.38        49.25        82.03 
TCGA-D3-A3MR TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F3 
      103.59        10.03         9.99        25.15        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29R 
       17.56         5.13        37.97        38.63         8.55         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GH TCGA-EE-A2GK 
        9.99         6.48         8.68        11.31        21.17        16.01 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MU 
        8.84        47.51        14.53       111.91        26.99         5.56 
TCGA-EE-A3JH TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19M TCGA-ER-A2NG 
       13.94        76.41         3.52        11.90        28.64        12.62 
TCGA-ER-A2NH TCGA-FS-A1ZA TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
       11.74         7.27         9.90        15.35        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A 
       16.21        12.16 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A3CE 
      111.09        32.55        28.08        22.55        31.40        13.32 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-EE-A180 TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A2A2 
        6.28         9.30         8.12         4.34        12.03        23.90 
TCGA-EE-A2GC TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MJ 
       10.13        10.88        13.02        98.27         9.53        63.42 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
      111.78        56.02        25.08        29.65        27.12        23.05 
TCGA-EE-A3AC TCGA-EE-A3AG TCGA-EE-A3JA TCGA-ER-A199 TCGA-ER-A19B TCGA-ER-A19G 
       25.84        15.95        22.22         5.72        25.18       114.15 
TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3PL 
        4.18        78.44        12.00        13.05         9.04         1.71 
TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZC TCGA-FS-A1ZD 
       64.47        23.80        14.24        15.52        20.38         8.22 
TCGA-FS-A1ZG TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A264 
        7.17        40.64         8.68         0.20        24.85        31.33 
TCGA-GN-A268 TCGA-GN-A26D 
       15.39        14.70 

$subtype3
TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1IA 
       68.09        10.26        11.41         5.39         4.01         4.93 
TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A185 TCGA-EE-A29V TCGA-EE-A2A6 TCGA-EE-A2GI 
        6.64        14.83         4.27         2.43         8.94         3.91 
TCGA-EE-A2M8 TCGA-EE-A3AD TCGA-ER-A19C TCGA-ER-A19H TCGA-ER-A19P TCGA-ER-A19Q 
        6.21         3.68         3.81        34.88        34.68         9.57 
TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1ZK TCGA-FS-A1ZM 
       36.07         1.87         6.58         5.95        12.89        47.38 
TCGA-FS-A1ZQ 
        8.68 

$subtype4
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       69.90        56.19        45.07        48.79        35.80        51.12 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
       13.68        44.52        22.36        11.57         1.12         1.35 
TCGA-EE-A184 TCGA-EE-A29B TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
        5.13         9.90         4.41         1.08        27.12         9.47 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A3AA TCGA-EE-A3AB 
        5.39         1.15         9.67         8.68       124.31       122.73 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 
        2.37        13.81        31.40        18.64        12.95        38.37 
TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       11.11        12.99        42.84        30.84        12.92        52.11 

subtype1 subtype2 subtype3 subtype4 
    3.52     0.20     1.87     1.08 
subtype1 subtype2 subtype3 subtype4 
  111.91   114.15    68.09   124.31 
subtype1 subtype2 subtype3 subtype4 
  14.235   18.165    6.640   13.745 
[1] "3.5 - 111.9 (14.2)" "0.2 - 114.2 (18.2)" "1.9 - 68.1 (6.6)"  
[4] "1.1 - 124.3 (13.7)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
 [49] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [73] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[139] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
 [49] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [73] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[139] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
 [49] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [73] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[139] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
D3V2, survival
          sevent
clus2       0  1
  subtype1 24 20
  subtype2 24 29
  subtype3 12 14
  subtype4 16 20
subtype1 subtype2 subtype3 subtype4 
      44       53       26       36 
subtype1 subtype2 subtype3 subtype4 
      20       29       14       20 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JO TCGA-D3-A3CB 
       16.57        71.80       121.22        65.49        50.86       166.09 
TCGA-D3-A3MR TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F3 
      103.59        20.38        35.93        53.92        28.60        10.49 
TCGA-DA-A3F5 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29R 
      215.44        78.87        47.84        39.62        72.03        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GH TCGA-EE-A2GK 
       55.89       345.96       171.52        46.82       182.01        54.71 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MU 
       21.67        61.51       204.62       203.01       248.61        53.26 
TCGA-EE-A3JH TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19M TCGA-ER-A2NG 
      101.75        77.75        12.59        13.02        61.05        31.27 
TCGA-ER-A2NH TCGA-FS-A1ZA TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
       32.05        27.68         9.90        76.41        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A 
       64.41        32.48 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A3CE 
      112.04       112.54        28.08        31.59        76.47        60.23 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-EE-A180 
       13.84         9.30       151.53        54.67         6.38        94.98 
TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GL TCGA-EE-A2GS 
      151.23        56.42        24.43        43.23        55.00        55.59 
TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
      129.24        47.28        96.23       144.76       167.87        47.54 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AG TCGA-EE-A3JA 
      103.56       136.44        41.59        25.84        23.47        53.19 
TCGA-ER-A199 TCGA-ER-A19B TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A2NC 
        9.17        98.40       268.93         6.41        79.99        44.02 
TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       16.34       247.04        33.21       216.92       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZT TCGA-FS-A1ZU 
       28.08       357.37        53.52         9.70        53.16        26.56 
TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 TCGA-GN-A26D 
        0.20       120.46       117.93        62.76        39.58 

$subtype3
TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3MV TCGA-D9-A1JW TCGA-D9-A3Z1 
       82.59        43.40        11.87        21.47         3.65        11.34 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A185 TCGA-EE-A29V TCGA-EE-A2A6 
       65.92        68.09        15.68         4.93        25.87        58.75 
TCGA-EE-A2GI TCGA-EE-A2M8 TCGA-EE-A3AD TCGA-ER-A19C TCGA-ER-A19H TCGA-ER-A19P 
       22.55        19.76         3.68        48.89       152.35       162.08 
TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1ZK 
       50.89        37.25        23.34        80.32        80.48        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZQ 
      101.26       133.55 

$subtype4
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       69.90        56.19        45.07        48.89        36.03       117.17 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
      176.55       107.34        23.44        29.82        33.73        14.70 
TCGA-EE-A184 TCGA-EE-A29B TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       68.15        80.61        32.19         2.56        44.35        18.58 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A3AA TCGA-EE-A3AB 
       13.87        14.30        19.56        67.13       124.31       122.73 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 
       26.73        13.81        31.40        35.44        13.91        50.73 
TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       26.37       131.08        44.05        32.71        47.38        74.73 

subtype1 subtype2 subtype3 subtype4 
    9.90     0.20     3.65     2.56 
subtype1 subtype2 subtype3 subtype4 
  345.96   357.37   162.08   176.55 
subtype1 subtype2 subtype3 subtype4 
  55.300   54.670   40.325   40.040 
[1] "9.9 - 346.0 (55.3)" "0.2 - 357.4 (54.7)" "3.6 - 162.1 (40.3)"
[4] "2.6 - 176.6 (40.0)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
 [49] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [55] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [79] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [97] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[103] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype3"
[145] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
 [49] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [55] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [79] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [97] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[103] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype3"
[145] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
 [49] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [55] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [79] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [97] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[103] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype3"
[145] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype2"
D3V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  2             0
  subtype2                 10             1
  subtype3                  5             0
  subtype4                  4             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        14                  30
  subtype2                                         6                  36
  subtype3                                         5                  17
  subtype4                                         3                  30
D3V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           2       1       6        1        7        1         2
  subtype2           2       1       5        1        6        2         2
  subtype3           1       0       1        2        1        1         0
  subtype4           3       0       1        4        2        3         1
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         1         0         3          3          6          8
  subtype2         2         3         8          1          1          6
  subtype3         1         0         5          1          4          5
  subtype4         2         0         4          0          4          7
          vv
clus       STAGE IV
  subtype1        2
  subtype2        5
  subtype3        0
  subtype4        2
D3V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     8 12 11  9
  subtype2     8 11  6 13
  subtype3     7  7  5  3
  subtype4    13  5  6  6
D3V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 22  8  5  8
  subtype2 32  5  6  6
  subtype3  9  6  7  3
  subtype4 19  6  6  4
D3V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 42  1   1   0   0
  subtype2 43  3   1   2   0
  subtype3 26  0   0   0   0
  subtype4 34  0   0   0   2
D3V8, multiclass
D3V9, binary
          cls
clus        0  1
  subtype1 19  8
  subtype2 23 13
  subtype3 11  5
  subtype4 11 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19    8
  subtype2   23   13
  subtype3   11    5
  subtype4   11   10
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        19       23       11       11
  YES        8       13        5       10
D3V10, binary
          cls
clus        0  1
  subtype1  5 41
  subtype2  8 45
  subtype3  3 24
  subtype4  8 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   41
  subtype2    8   45
  subtype3    3   24
  subtype4    8   30
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        8        3        8
  YES       41       45       24       30
D3V11, continuous
D3V12, binary
          cls
clus        0  1
  subtype1 17 29
  subtype2 19 34
  subtype3 11 16
  subtype4 17 21
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   29
  subtype2   19   34
  subtype3   11   16
  subtype4   17   21
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       19       11       17
  MALE         29       34       16       21

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 28 32
  subtype2 26 29
  subtype3 19 21
subtype1 subtype2 subtype3 
      60       55       40 
subtype1 subtype2 subtype3 
      32       29       21 
$subtype1
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3MR 
       22.55        31.40        10.26        11.41        13.32       103.59 
TCGA-D3-A3MV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB 
        5.39        35.80        13.68        44.52         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 
        6.64        14.83        11.57         8.12         1.12         5.13 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
        4.27         5.13         4.41         1.08        27.12         9.47 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2GS 
        8.94        10.13        21.17         3.91         1.15        13.02 
TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MS 
        6.21         9.53        63.42       111.91        26.99        27.12 
TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AE TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C 
       23.05         3.68         2.37        12.95        38.37         3.81 
TCGA-ER-A19L TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A2NH 
       12.99        34.68         9.57        36.07         1.87        11.74 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZG TCGA-FS-A1ZJ 
        6.58         1.71        64.47        14.24         7.17        12.92 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A26A 
       12.89        47.38         8.68         0.20        24.85        12.16 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2JC TCGA-D3-A2JO 
      111.09        32.55        98.76        28.08        69.90        49.25 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I8 TCGA-EE-A20C TCGA-EE-A29B 
        6.28         9.30        48.79        25.15         4.34         9.90 
TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
       12.03         9.99        23.90        16.01        10.88         9.67 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
        8.68        98.27        14.53       111.78        56.02        25.08 
TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG 
       29.65       124.31       122.73        25.84        13.81        15.95 
TCGA-EE-A3JA TCGA-ER-A193 TCGA-ER-A199 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
       22.22        31.40         5.72        25.18         3.52        11.90 
TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC 
       11.11       114.15         4.18        42.84        78.44        12.00 
TCGA-ER-A2NF TCGA-ER-A3ES TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC 
       13.05         9.04        23.80        15.52         7.27        20.38 
TCGA-FS-A1ZD TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 
        8.22        40.64         8.68        31.33        10.09        15.39 
TCGA-GN-A26D 
       14.70 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2JN TCGA-D3-A2JP 
       16.47        70.16        68.09         8.38        56.19        45.07 
TCGA-D3-A3CB TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A3F2 
       82.03         4.01        51.12        10.03         9.99        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G 
        7.00        17.56         1.35        37.97        38.63         8.55 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GP 
        8.84         6.48         2.43         8.68        11.31         5.39 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MU TCGA-EE-A3JH TCGA-ER-A195 TCGA-ER-A19A 
        8.84        47.51         5.56        13.94        18.64        76.41 
TCGA-ER-A19H TCGA-ER-A19M TCGA-ER-A2NG TCGA-FR-A3YN TCGA-FS-A1ZH TCGA-FS-A1ZP 
       34.88        28.64        12.62         5.95        30.84        52.11 
TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A267 
        9.90        15.35        84.72        16.21 

subtype1 subtype2 subtype3 
    0.20     3.52     1.35 
subtype1 subtype2 subtype3 
  111.91   124.31    84.72 
subtype1 subtype2 subtype3 
  11.655   16.010   15.780 
[1] "0.2 - 111.9 (11.7)" "3.5 - 124.3 (16.0)" "1.4 - 84.7 (15.8)" 
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
D4V2, survival
          sevent
clus2       0  1
  subtype1 31 33
  subtype2 26 29
  subtype3 19 21
subtype1 subtype2 subtype3 
      64       55       40 
subtype1 subtype2 subtype3 
      33       29       21 
$subtype1
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3MR 
       31.59        76.47        43.40        11.87        60.23       103.59 
TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW 
       21.47       151.53        54.67         3.65         6.38        36.03 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F8 
      176.55       107.34        65.92        23.44        68.09        15.68 
TCGA-EE-A17X TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F 
       29.82        94.98        33.73        68.15         4.93        78.87 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2A6 TCGA-EE-A2GC 
       32.19         2.56        44.35        18.58        58.75        43.23 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M8 TCGA-EE-A2MD 
      182.01        22.55        14.30        55.59        19.76        47.28 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD 
       96.23       203.01       248.61       136.44        41.59         3.68 
TCGA-EE-A3AE TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19L TCGA-ER-A19P 
       26.73        13.91        50.73        48.89       131.08       162.08 
TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A2NH TCGA-ER-A3ET TCGA-ER-A3PL 
       50.89        37.25        23.34        32.05        80.32        33.21 
TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
      216.92        20.91         9.70        47.38        23.93       101.26 
TCGA-FS-A1ZQ TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A26A 
      133.55         0.20       120.46        32.48 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2JC TCGA-D3-A2JO 
      112.04       112.54       121.22        28.08        69.90        50.86 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I8 TCGA-EE-A20C TCGA-EE-A29B 
       13.84         9.30        48.89        53.92       151.23        80.61 
TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
       56.42        55.89        24.43        54.71        55.00        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
       67.13       129.24       204.62       144.76       167.87        47.54 
TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG 
      103.56       124.31       122.73        25.84        13.81        23.47 
TCGA-EE-A3JA TCGA-ER-A193 TCGA-ER-A199 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
       53.19        31.40         9.17        98.40        12.59        13.02 
TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC 
       26.37       268.93         6.41        44.05        79.99        44.02 
TCGA-ER-A2NF TCGA-ER-A3ES TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC 
       16.34       247.04       202.62        28.08        27.68       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 
       53.52        53.16        26.56       117.93        10.09        62.76 
TCGA-GN-A26D 
       39.58 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2JN TCGA-D3-A2JP 
       16.57        71.80        82.59        65.49        56.19        45.07 
TCGA-D3-A3CB TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A3F2 
      166.09        11.34       117.17        20.38        35.93        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G 
       10.49       215.44        14.70        47.84        39.62        72.03 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GP 
       14.47       345.96        25.87       171.52        46.82        13.87 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MU TCGA-EE-A3JH TCGA-ER-A195 TCGA-ER-A19A 
       21.67        61.51        53.26       101.75        35.44        77.75 
TCGA-ER-A19H TCGA-ER-A19M TCGA-ER-A2NG TCGA-FR-A3YN TCGA-FS-A1ZH TCGA-FS-A1ZP 
      152.35        61.05        31.27        80.48        32.71        74.73 
TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A267 
        9.90        76.41        84.72        64.41 

subtype1 subtype2 subtype3 
    0.20     6.41     9.90 
subtype1 subtype2 subtype3 
  248.61   357.37   345.96 
subtype1 subtype2 subtype3 
  43.875   53.520   54.725 
[1] "0.2 - 248.6 (43.9)" "6.4 - 357.4 (53.5)" "9.9 - 346.0 (54.7)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2"
D4V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  9             0
  subtype2                  9             1
  subtype3                  3             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        11                  44
  subtype2                                         7                  39
  subtype3                                        10                  30
D4V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           2       0       5        5        6        6         0
  subtype2           3       1       6        2        5        0         4
  subtype3           3       1       2        1        5        1         1
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         2         0         8          2          7          8
  subtype2         4         3         8          1          2          8
  subtype3         0         0         4          2          6         10
          vv
clus       STAGE IV
  subtype1        4
  subtype2        2
  subtype3        3
D4V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    15 14 11 13
  subtype2    14 10  6 11
  subtype3     7 11 11  7
D4V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 33 11 10  5
  subtype2 32  4  8  8
  subtype3 17 10  6  8
D4V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 57  2   1   1   1
  subtype2 49  1   0   1   0
  subtype3 39  1   1   0   1
D4V8, multiclass
D4V9, binary
          cls
clus        0  1
  subtype1 31 14
  subtype2 20 12
  subtype3 13 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   14
  subtype2   20   12
  subtype3   13   10
     clus
vv    subtype1 subtype2 subtype3
  NO        31       20       13
  YES       14       12       10
D4V10, binary
          cls
clus        0  1
  subtype1  6 59
  subtype2 12 44
  subtype3  6 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   59
  subtype2   12   44
  subtype3    6   37
     clus
vv    subtype1 subtype2 subtype3
  NO         6       12        6
  YES       59       44       37
D4V11, continuous
D4V12, binary
          cls
clus        0  1
  subtype1 29 36
  subtype2 23 33
  subtype3 12 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   36
  subtype2   23   33
  subtype3   12   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       29       23       12
  MALE         36       33       31

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 36 48
  subtype2 49 20
  subtype3 41 52
subtype1 subtype2 subtype3 
      84       69       93 
subtype1 subtype2 subtype3 
      48       20       52 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2JA 
       16.47       111.09        32.55        70.16        28.08        88.50 
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3CE 
       69.90        56.19        45.07        15.25        33.11        13.32 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-D3-A5GR 
        9.30         5.39         8.88        20.48        52.04         2.01 
TCGA-D3-A5GS TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F3 
        6.97        51.12        13.68        36.69        25.15         7.00 
TCGA-DA-A3F5 TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A 
       17.56        10.55        36.07         4.34         9.24         7.96 
TCGA-EE-A29G TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A5 
        8.55         8.12         8.84         6.48         8.68         9.67 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS 
       17.98        34.92        33.83        30.84         5.39        13.02 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MK 
        8.84        98.27         2.70        47.51        14.53       111.78 
TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AG TCGA-EE-A3J8 
       56.02        26.99        27.12       122.73        15.95        16.14 
TCGA-ER-A195 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H TCGA-ER-A19J 
       18.64        25.18         3.52        11.90        34.88         4.18 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A2NC TCGA-ER-A3PL TCGA-FR-A69P TCGA-FS-A1YX 
       12.99        28.64        12.00         1.71         4.87         3.45 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
       23.80        14.24         7.30         7.27        20.38         8.22 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F5 
       11.08        30.84        47.38         8.81        49.15        28.73 
TCGA-FS-A4FB TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
        5.98         9.90        15.35        24.85        10.09        12.16 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JB 
        8.52        98.76        85.32         8.38        21.14        68.25 
TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3C8 TCGA-D3-A3CB 
       30.87        25.38        77.00        49.25        34.13        82.03 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51T 
       24.00       103.59        42.71        15.09        41.13        13.94 
TCGA-D3-A5GO TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 
       47.87        48.79        39.19        44.52        22.36        19.36 
TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S 
       14.83         1.12         5.13         9.47        12.03         9.99 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GH TCGA-EE-A2GI 
       11.31        25.28        23.90         8.94        21.17         3.91 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME 
       19.43        16.01        10.88         9.67         6.21        29.46 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MR TCGA-EE-A2MU 
       44.22         7.96        63.42       111.91        29.65         5.56 
TCGA-EE-A3AA TCGA-EE-A3AE TCGA-EE-A3J5 TCGA-EE-A3JH TCGA-ER-A193 TCGA-ER-A199 
      124.31         2.37        21.60        13.94        31.40         5.72 
TCGA-ER-A19A TCGA-ER-A19G TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19S TCGA-ER-A1A1 
       76.41       114.15        42.84        34.68        36.07        78.44 
TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A4F8 
       11.74        85.74        15.52        40.64        27.39        14.20 
TCGA-FW-A5DY TCGA-GF-A4EO TCGA-GN-A265 
        0.43         7.23        84.72 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JG 
       22.55        31.40        68.09        10.26        11.41         7.50 
TCGA-D3-A2JK TCGA-D3-A3BZ TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E 
        6.35        99.55        61.38         6.28        13.55        80.22 
TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW 
       17.72        95.38        23.11         4.01         2.86        35.80 
TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EB-A44R 
       10.03         9.99         4.93         6.64         0.20         0.20 
TCGA-EB-A5KH TCGA-EB-A5UN TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A182 
        0.13         0.07        11.57         6.31         8.12         1.35 
TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29C 
       12.20         5.13         4.27         1.18         9.90        37.97 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V 
       11.15        38.63         4.41         1.08        27.12         2.43 
TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GM TCGA-EE-A2GR TCGA-EE-A2GU 
        8.09        39.39        10.13        28.31         1.15         8.68 
TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AD 
        9.53        25.08        21.60        23.05        25.84         3.68 
TCGA-EE-A3AF TCGA-EE-A3JA TCGA-EE-A3JI TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C 
       13.81        22.22        33.60        12.95        38.37         3.81 
TCGA-ER-A19F TCGA-ER-A19Q TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES 
       11.11         9.57         1.87        13.05        12.62         9.04 
TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE 
        6.58         5.95        64.47        11.05         3.39        19.53 
TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZU 
        7.17        12.92        12.89        52.11         8.68         8.68 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F9 
        0.82         5.23        53.82         3.22         7.36        10.78 
TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A264 
        6.41         2.27         0.20         1.02         0.13        31.33 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

subtype1 subtype2 subtype3 
    1.71     0.43     0.07 
subtype1 subtype2 subtype3 
  122.73   124.31    99.55 
subtype1 subtype2 subtype3 
   15.30    24.00    10.03 
[1] "1.7 - 122.7 (15.3)" "0.4 - 124.3 (24.0)" "0.1 - 99.5 (10.0)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, survival
          sevent
clus2       0  1
  subtype1 36 50
  subtype2 50 20
  subtype3 44 52
subtype1 subtype2 subtype3 
      86       70       96 
subtype1 subtype2 subtype3 
      50       20       52 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2JA 
       16.57       112.04       112.54        71.80        28.08       115.53 
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3CE 
       69.90        56.19        45.07        58.03        33.11        60.23 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-D3-A5GR 
        9.30        21.47        10.03        51.68       136.11       166.09 
TCGA-D3-A5GS TCGA-D9-A1JX TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 
        7.43         6.38       117.17       176.55        61.18        53.92 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H 
       10.49       215.44        27.22       109.64       151.23       168.26 
TCGA-EE-A29A TCGA-EE-A29G TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W 
       63.32        72.03        37.35        14.47       345.96       171.52 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       39.25       314.53       135.91        90.94       101.95        13.87 
TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MI 
       55.59        21.67       129.24        28.80        61.51       204.62 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AG 
      144.76       167.87       248.61       136.44       122.73        23.47 
TCGA-EE-A3AH TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
      138.77        34.32        35.44        98.40        12.59        13.02 
TCGA-ER-A19H TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A2NC TCGA-ER-A3PL 
      152.35         6.41       131.08        61.05        44.02        33.21 
TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
        4.87        48.59       202.62        20.91         7.76        27.68 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR 
      357.37        53.52        15.45        32.71       101.26        11.41 
TCGA-FS-A1ZS TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 
      148.77        28.73        26.73         9.90        76.41       120.46 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        32.48 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JB 
       16.67       121.22       103.10        65.49        23.77       168.00 
TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3C8 TCGA-D3-A3CB 
       48.76        31.27       156.10        50.86        34.13       166.09 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51T 
       24.53       103.59        43.69        40.14       131.90        15.06 
TCGA-D3-A5GO TCGA-D9-A149 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB 
      137.92        54.67        48.89       194.83       107.34        23.44 
TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P 
       28.60        15.68        33.73        78.87        18.58        56.42 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GH 
       55.89        46.82        78.94        24.43        58.75       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 
       22.55        89.33        54.71        55.00        19.56        19.76 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MR 
      103.27       103.17        16.96        96.23       203.01       103.56 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AE TCGA-EE-A3J5 TCGA-EE-A3JH TCGA-ER-A193 
       53.26       124.31        26.73        36.95       101.75        31.40 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19G TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19S 
        9.17        77.75       268.93        44.05       162.08        37.25 
TCGA-ER-A1A1 TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT TCGA-FS-A1ZW 
       79.99        32.05       174.18        28.08        53.16        49.48 
TCGA-FS-A4F8 TCGA-FW-A5DY TCGA-GF-A4EO TCGA-GN-A265 
      174.84         2.40         7.23        84.72 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JG 
       31.59        76.47        82.59        43.40        11.87       113.52 
TCGA-D3-A2JK TCGA-D3-A3BZ TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E 
       12.10       115.59        86.93        13.84        26.93       161.85 
TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A3Z1 
       18.38       110.89       125.19       151.53         3.65        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC 
        3.22        36.03        20.38        35.93        65.92        68.09 
TCGA-EB-A44Q TCGA-EB-A44R TCGA-EB-A5KH TCGA-EB-A5UL TCGA-EB-A5UN TCGA-EE-A17X 
        0.92        10.16        17.85         3.55        38.86        29.82 
TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 
        8.65        94.98        14.70        26.86        68.15         4.93 
TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
       13.55        80.61        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GC 
        2.56        44.35        25.87        17.92        47.54        43.23 
TCGA-EE-A2GM TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MQ 
       75.48        14.30        67.13        47.28        47.54        43.23 
TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3JA TCGA-EE-A3JI 
       41.59        25.84         3.68        13.81        53.19       148.08 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19Q TCGA-ER-A2ND 
       13.91        50.73        48.89        26.37        50.89        23.34 
TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW 
       16.34        31.27       247.04        80.32        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
      228.59        48.85        40.27         9.70        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       74.73       133.55        26.56        27.06        27.02        77.79 
TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 
       50.14        66.67        12.43        49.45        77.88         0.20 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       22.98        47.54       117.93        64.41        62.76        39.58 

subtype1 subtype2 subtype3 
    4.87     2.40     0.20 
subtype1 subtype2 subtype3 
  357.37   268.93   247.04 
subtype1 subtype2 subtype3 
  57.110   53.965   40.930 
[1] "4.9 - 357.4 (57.1)" "2.4 - 268.9 (54.0)" "0.2 - 247.0 (40.9)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  9             0
  subtype2                  4             0
  subtype3                 20             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        30                  50
  subtype2                                        11                  56
  subtype3                                        14                  62
D5V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           4       3       9        1        8        7         3
  subtype2           3       1       8        6        5        4         4
  subtype3           3       1       4        3       11        5         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         3         1        13          5          6         11
  subtype2         1         2         9          0          5         14
  subtype3         9         7         8          6         11         16
          vv
clus       STAGE IV
  subtype1        7
  subtype2        2
  subtype3        3
D5V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    18 25 15 12
  subtype2    19 12 12 14
  subtype3    14 20 22 27
D5V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 45 17 12 10
  subtype2 40 14  4  9
  subtype3 49 16 15 12
D5V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 78  2   1   1   3
  subtype2 64  1   0   0   1
  subtype3 90  1   1   1   1
D5V8, multiclass
D5V9, binary
          cls
clus        0  1
  subtype1 27 18
  subtype2 30 13
  subtype3 41 33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   18
  subtype2   30   13
  subtype3   41   33
     clus
vv    subtype1 subtype2 subtype3
  NO        27       30       41
  YES       18       13       33
D5V10, binary
          cls
clus        0  1
  subtype1 15 74
  subtype2 11 60
  subtype3  5 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   74
  subtype2   11   60
  subtype3    5   93
     clus
vv    subtype1 subtype2 subtype3
  NO        15       11        5
  YES       74       60       93
D5V11, continuous
D5V12, binary
          cls
clus        0  1
  subtype1 39 50
  subtype2 25 46
  subtype3 36 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   50
  subtype2   25   46
  subtype3   36   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       25       36
  MALE         50       46       62

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 29 39
  subtype2 66 37
  subtype3 31 44
subtype1 subtype2 subtype3 
      68      103       75 
subtype1 subtype2 subtype3 
      39       37       44 
$subtype1
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JA 
      111.09        32.55        70.16        28.08         8.38        88.50 
TCGA-D3-A2JN TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV 
       56.19        15.25        33.11        13.32         9.30         5.39 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-D3-A5GR TCGA-DA-A1HY TCGA-DA-A1I7 
        8.88        20.48        52.04         2.01        51.12        36.69 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H 
       25.15        17.56        10.55        36.07         4.34         9.24 
TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A5 
        7.96         8.12         8.84         6.48         8.68         9.67 
TCGA-EE-A2GE TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       34.92        30.84        13.02         8.84        98.27         2.70 
TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A3AB TCGA-EE-A3AG 
       47.51        14.53       111.78        56.02       122.73        15.95 
TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H 
       16.14        18.64        25.18         3.52        11.90        34.88 
TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A3PL TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z0 
       12.99        12.00         1.71         4.87         3.45        23.80 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF 
       14.24         7.30         7.27        20.38         8.22        11.08 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FB TCGA-GF-A3OT TCGA-GN-A262 
       30.84        47.38        49.15         5.98         9.90        24.85 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        12.16 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J7 
        8.52        98.76        22.55        31.40        68.09        85.32 
TCGA-D3-A2J9 TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH 
       21.14        68.25        69.90        11.41        30.87        25.38 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
       77.00        49.25        45.07        99.55        34.13        82.03 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51E TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J 
       24.00       103.59        80.22        42.71        15.09        41.13 
TCGA-D3-A51T TCGA-D3-A5GO TCGA-D3-A5GS TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
       13.94        47.87         6.97         4.01         2.86        48.79 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB 
       35.80        10.03        39.19        13.68        44.52        22.36 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EE-A181 TCGA-EE-A183 
       19.36         7.00        14.83         0.20         1.12        12.20 
TCGA-EE-A184 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M 
        5.13         5.13         1.18        37.97         4.41        27.12 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.47        12.03         8.09        11.31        25.28        23.90 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
        8.94        10.13        21.17         3.91        19.43        16.01 
TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       10.88         9.67         6.21        29.46        44.22         7.96 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
       63.42       111.91        25.08        26.99        21.60        29.65 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3J5 TCGA-EE-A3JA 
        5.56       124.31        25.84         2.37        21.60        22.22 
TCGA-EE-A3JH TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19F TCGA-ER-A19G 
       13.94        31.40        38.37         5.72        11.11       114.15 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A1A1 
       28.64        42.84        34.68         9.57        36.07        78.44 
TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT 
       12.62        11.74         5.95        85.74        15.52        40.64 
TCGA-FS-A1ZW TCGA-FS-A4F4 TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-FW-A5DY TCGA-GF-A4EO 
       27.39         7.36        14.20         1.02         0.43         7.23 
TCGA-GN-A265 
       84.72 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3ML 
       16.47        10.26         7.50         6.35        61.38         6.28 
TCGA-D3-A3MU TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GU TCGA-DA-A1I4 TCGA-DA-A1IA 
       13.55        17.72        95.38        23.11         9.99         4.93 
TCGA-DA-A1IC TCGA-EB-A44R TCGA-EB-A5KH TCGA-EB-A5UN TCGA-EE-A17X TCGA-EE-A17Z 
        6.64         0.20         0.13         0.07        11.57         6.31 
TCGA-EE-A180 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E 
        8.12         1.35         4.27         9.90        11.15        38.63 
TCGA-EE-A29G TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2GB TCGA-EE-A2GD 
        8.55         1.08         9.99         2.43        39.39        17.98 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD 
       28.31        33.83         5.39         1.15         8.68         9.53 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3JI TCGA-ER-A197 
       27.12        23.05         3.68        13.81        33.60        12.95 
TCGA-ER-A19A TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A3ES 
       76.41         3.81         4.18         1.87        13.05         9.04 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG 
        6.58        64.47        11.05         3.39        19.53         7.17 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZU 
       12.92        12.89        52.11         8.68         8.81         8.68 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F5 TCGA-FS-A4F9 
        0.82         5.23        53.82         3.22        28.73        10.78 
TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 
        6.41         2.27         0.20         0.13        15.35        31.33 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

subtype1 subtype2 subtype3 
    1.71     0.20     0.07 
subtype1 subtype2 subtype3 
  122.73   124.31    95.38 
subtype1 subtype2 subtype3 
  14.385   22.220    9.900 
[1] "1.7 - 122.7 (14.4)" "0.2 - 124.3 (22.2)" "0.1 - 95.4 (9.9)"  
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D6V2, survival
          sevent
clus2       0  1
  subtype1 29 40
  subtype2 70 38
  subtype3 31 44
subtype1 subtype2 subtype3 
      69      108       75 
subtype1 subtype2 subtype3 
      40       38       44 
$subtype1
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JA 
      112.04       112.54        71.80        28.08        65.49       115.53 
TCGA-D3-A2JN TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV 
       56.19        58.03        33.11        60.23         9.30        21.47 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-D3-A5GR TCGA-DA-A1HY TCGA-DA-A1I7 
       10.03        51.68       136.11       166.09       117.17        61.18 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H 
       53.92       215.44        27.22       109.64       151.23       168.26 
TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A5 
       63.32        37.35        14.47       345.96       171.52        39.25 
TCGA-EE-A2GE TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
      135.91       101.95        55.59        21.67       129.24        28.80 
TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A3AB TCGA-EE-A3AG 
       61.51       204.62       144.76       167.87       122.73        23.47 
TCGA-EE-A3AH TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
      138.77        34.32        35.44        98.40        12.59        13.02 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A3PL TCGA-FR-A69P TCGA-FS-A1YX 
      152.35       131.08        44.02        33.21         4.87        48.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
      202.62        20.91         7.76        27.68       357.37        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FB TCGA-GF-A3OT 
       15.45        32.71       101.26       148.77        26.73         9.90 
TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
      120.46        10.09        32.48 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J7 
       16.67       121.22        31.59        76.47        82.59       103.10 
TCGA-D3-A2J9 TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH 
       23.77       168.00        69.90        11.87        48.76        31.27 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
      156.10        50.86        45.07       115.59        34.13       166.09 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51E TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J 
       24.53       103.59       161.85        43.69        40.14       131.90 
TCGA-D3-A51T TCGA-D3-A5GO TCGA-D3-A5GS TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       15.06       137.92         7.43       151.53        54.67         3.65 
TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
        6.38        11.34         3.22        48.89        36.03        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
      194.83       176.55       107.34        23.44        28.60        10.49 
TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A5UL TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 
       15.68         0.92         3.55        33.73        26.86        68.15 
TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       78.87        13.55        47.84        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
       56.42        17.92        46.82        78.94        24.43        58.75 
TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
       43.23       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ 
       19.56        19.76       103.27       103.17        16.96        96.23 
TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU 
      203.01        47.54       248.61        43.23       103.56        53.26 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3J5 TCGA-EE-A3JA TCGA-EE-A3JH 
      124.31        25.84        26.73        36.95        53.19       101.75 
TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19M 
       31.40        50.73         9.17        26.37       268.93        61.05 
TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A1A1 TCGA-ER-A2NG 
       44.05       162.08        50.89        37.25        79.99        31.27 
TCGA-ER-A2NH TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT TCGA-FS-A1ZW 
       32.05        80.48       174.18        28.08        53.16        49.48 
TCGA-FS-A4F4 TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-FW-A5DY TCGA-GF-A4EO TCGA-GN-A265 
       66.67       174.84        22.98         2.40         7.23        84.72 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3ML 
       16.57        43.40       113.52        12.10        86.93        13.84 
TCGA-D3-A3MU TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GU TCGA-DA-A1I4 TCGA-DA-A1IA 
       26.93        18.38       110.89       125.19        35.93        65.92 
TCGA-DA-A1IC TCGA-EB-A44R TCGA-EB-A5KH TCGA-EB-A5UN TCGA-EE-A17X TCGA-EE-A17Z 
       68.09        10.16        17.85        38.86        29.82         8.65 
TCGA-EE-A180 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E 
       94.98        14.70         4.93        80.61        13.97        39.62 
TCGA-EE-A29G TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2GB TCGA-EE-A2GD 
       72.03         2.56        55.89        25.87        47.54       314.53 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD 
       75.48        90.94        13.87        14.30        67.13        47.28 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3JI TCGA-ER-A197 
      136.44        41.59         3.68        13.81       148.08        13.91 
TCGA-ER-A19A TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A3ES 
       77.75        48.89         6.41        23.34        16.34       247.04 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG 
       80.32       216.92       228.59        48.85        40.27         9.70 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZU 
       47.38        23.93        74.73       133.55        11.41        26.56 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F5 TCGA-FS-A4F9 
       27.06        27.02        77.79        50.14        28.73        12.43 
TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A261 TCGA-GN-A264 
       49.45        77.88         0.20        47.54        76.41       117.93 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

subtype1 subtype2 subtype3 
    4.87     0.92     0.20 
subtype1 subtype2 subtype3 
  357.37   268.93   314.53 
subtype1 subtype2 subtype3 
   58.03    47.69    43.40 
[1] "4.9 - 357.4 (58.0)" "0.9 - 268.9 (47.7)" "0.2 - 314.5 (43.4)"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D6V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  9             0
  subtype2                  5             0
  subtype3                 19             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        23                  39
  subtype2                                        15                  91
  subtype3                                        17                  38
D6V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           3       3       8        1        7        5         2
  subtype2           5       2      10        7       12        4         4
  subtype3           2       0       3        2        5        7         4
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         2         1        11          4          4          8
  subtype2         3         2        15          1          9         20
  subtype3         8         7         4          6          9         13
          vv
clus       STAGE IV
  subtype1        5
  subtype2        4
  subtype3        3
D6V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    13 21 13  8
  subtype2    29 24 15 19
  subtype3     9 12 21 26
D6V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 38 14  8  7
  subtype2 57 19 14 15
  subtype3 39 14  9  9
D6V7, multiclass
          vv
clus        M0  M1 M1A M1B M1C
  subtype1  62   1   1   1   2
  subtype2 101   0   1   1   3
  subtype3  69   3   0   0   0
D6V8, multiclass
D6V9, binary
          cls
clus        0  1
  subtype1 21 13
  subtype2 47 23
  subtype3 30 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   13
  subtype2   47   23
  subtype3   30   28
     clus
vv    subtype1 subtype2 subtype3
  NO        21       47       30
  YES       13       23       28
D6V10, binary
          cls
clus        0  1
  subtype1 11 60
  subtype2 15 96
  subtype3  5 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   60
  subtype2   15   96
  subtype3    5   71
     clus
vv    subtype1 subtype2 subtype3
  NO        11       15        5
  YES       60       96       71
D6V11, continuous
D6V12, binary
          cls
clus        0  1
  subtype1 31 40
  subtype2 41 70
  subtype3 28 48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   40
  subtype2   41   70
  subtype3   28   48
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       31       41       28
  MALE         40       70       48

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 43 23
  subtype2 42 57
  subtype3 35 39
subtype1 subtype2 subtype3 
      66       99       74 
subtype1 subtype2 subtype3 
      23       57       39 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO 
       16.47        32.55        28.08        22.55        25.38        49.25 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
       33.11        82.03        13.32       103.59        13.55         5.39 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A1I8 
        8.88        20.48        13.94        52.04        10.03        25.15 
TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EB-A5KH 
       19.36        17.56        14.83         0.20         0.20         0.13 
TCGA-EE-A17X TCGA-EE-A17Y TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A29P 
       11.57        10.55         1.35        36.07         4.34        12.03 
TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB 
        8.12         6.48         8.09        11.31        23.90        39.39 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
        3.91        16.01        30.84         8.68        98.27         2.70 
TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A3AB TCGA-EE-A3AC 
        9.53       111.91        26.99        29.65       122.73        25.84 
TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A199 TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19G 
       15.95        16.14         5.72        11.90        11.11       114.15 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZH 
       42.84        78.44        13.05         7.27        20.38        30.84 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
        0.20         0.13         7.23        24.85        84.72        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JG 
        8.52        31.40        10.26        68.25        30.87         7.50 
TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML 
        6.35        77.00        45.07        15.25        24.00         6.28 
TCGA-D3-A51E TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU 
       80.22        41.13        17.72        95.38         6.97        23.11 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 
        4.01         2.86        48.79        35.80        39.19        13.68 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A5UN TCGA-EE-A17Z 
        4.93        22.36         6.64         7.00         0.07         6.31 
TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F 
        8.12         1.12        12.20         5.13         4.27         5.13 
TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        1.18         9.90        11.15        38.63         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN 
       27.12         8.94        10.13        19.43        10.88        33.83 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
        1.15         9.67        29.46         7.96        63.42       111.78 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA 
       56.02        25.08        21.60        27.12        23.05       124.31 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3JA TCGA-EE-A3JI TCGA-ER-A197 
        3.68         2.37        13.81        22.22        33.60        12.95 
TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S 
       38.37         3.81         4.18        34.68         9.57        36.07 
TCGA-ER-A2ND TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
        1.87        12.62         9.04         1.71         5.95        64.47 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       23.80        14.24        11.08         7.17        12.92        12.89 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       52.11         8.68         8.81        40.64         8.68        27.39 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB 
        0.82         5.23        53.82         7.36        28.73         5.98 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       31.33        16.21        15.39 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
      111.09        70.16        98.76        68.09        85.32         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ 
       21.14        88.50        69.90        11.41        56.19        99.55 
TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
       34.13        61.38         9.30        42.71        15.09        51.12 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        9.99        44.52        36.69         9.24         7.96        37.97 
TCGA-EE-A29G TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29W 
        8.55         9.47         8.84         9.99         2.43         8.68 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GM 
       25.28         9.67        17.98        34.92        21.17        28.31 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MG 
        5.39        13.02         8.84         6.21        47.51        44.22 
TCGA-EE-A2MI TCGA-EE-A2MU TCGA-EE-A3J5 TCGA-EE-A3JH TCGA-ER-A193 TCGA-ER-A195 
       14.53         5.56        21.60        13.94        31.40        18.64 
TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M 
       76.41        25.18         3.52        34.88        12.99        28.64 
TCGA-ER-A2NC TCGA-ER-A2NH TCGA-ER-A3ET TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1YY 
       12.00        11.74         6.58         4.87         3.45        11.05 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZM 
       15.52         7.30         3.39         8.22        19.53        47.38 
TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 
       49.15        14.20         2.27         1.02         9.90        15.35 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.07     1.02 
subtype1 subtype2 subtype3 
  122.73   124.31   111.09 
subtype1 subtype2 subtype3 
   15.98    12.89    14.81 
[1] "0.1 - 122.7 (16.0)" "0.1 - 124.3 (12.9)" "1.0 - 111.1 (14.8)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D7V2, survival
          sevent
clus2       0  1
  subtype1 43 24
  subtype2 46 58
  subtype3 35 39
subtype1 subtype2 subtype3 
      67      104       74 
subtype1 subtype2 subtype3 
      24       58       39 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO 
       16.57       112.54        28.08        31.59        31.27        50.86 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
       33.11       166.09        60.23       103.59        26.93        21.47 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 
       10.03        51.68        15.06       136.11         6.38        20.38 
TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R 
       53.92        28.60       215.44        15.68         0.92        10.16 
TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A17Y TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20C 
       17.85        29.82        27.22        14.70       109.64       151.23 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 
       56.42        37.35       345.96        17.92        46.82        24.43 
TCGA-EE-A2GB TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 
       47.54        22.55        54.71       101.95        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A3AB 
       28.80        47.28       203.01       248.61       103.56       122.73 
TCGA-EE-A3AC TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A199 TCGA-ER-A19E TCGA-ER-A19F 
       25.84        23.47        34.32         9.17        13.02        26.37 
TCGA-ER-A19G TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-FS-A1ZA TCGA-FS-A1ZC 
      268.93        44.05        79.99        16.34        27.68       357.37 
TCGA-FS-A1ZH TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 
       32.71         0.20        47.54         7.23       120.46        84.72 
TCGA-GN-A26D 
       39.58 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JG 
       16.67        76.47        43.40       168.00        48.76       113.52 
TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML 
       12.10       156.10        45.07        58.03        24.53        13.84 
TCGA-D3-A51E TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU 
      161.85       131.90        18.38       110.89         7.43       125.19 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
      151.53        54.67         3.65        11.34         3.22        48.89 
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       36.03       194.83       176.55        65.92        23.44        68.09 
TCGA-DA-A3F3 TCGA-EB-A5UL TCGA-EB-A5UN TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 
       10.49         3.55        38.86         8.65        94.98        33.73 
TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29B 
       26.86        68.15         4.93        78.87        13.55        80.61 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A2A6 
       13.97        39.62        32.19         2.56        44.35        58.75 
TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT 
       43.23        89.33        55.00        90.94        14.30        19.56 
TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
      103.27        16.96        96.23       144.76       167.87        47.54 
TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE 
       43.23       136.44        41.59       124.31         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-EE-A3JA TCGA-EE-A3JI TCGA-ER-A197 TCGA-ER-A198 
       13.81       138.77        53.19       148.08        13.91        50.73 
TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND 
       48.89         6.41       162.08        50.89        37.25        23.34 
TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 
       31.27       247.04        33.21        80.48       216.92       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       20.91        15.45         9.70        47.38        23.93        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
      133.55        11.41        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 
       27.02        77.79        66.67        28.73        26.73       117.93 
TCGA-GN-A267 TCGA-GN-A268 
       64.41        62.76 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
      112.04        71.80       121.22        82.59       103.10        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ 
       23.77       115.53        69.90        11.87        56.19       115.59 
TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
       34.13        86.93         9.30        43.69        40.14       117.17 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       35.93       107.34        61.18       168.26        63.32        47.84 
TCGA-EE-A29G TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29W 
       72.03        18.58        14.47        55.89        25.87       171.52 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GM 
       78.94        39.25       314.53       135.91       182.01        75.48 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MG 
       13.87        55.59        21.67        19.76        61.51       103.17 
TCGA-EE-A2MI TCGA-EE-A2MU TCGA-EE-A3J5 TCGA-EE-A3JH TCGA-ER-A193 TCGA-ER-A195 
      204.62        53.26        36.95       101.75        31.40        35.44 
TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M 
       77.75        98.40        12.59       152.35       131.08        61.05 
TCGA-ER-A2NC TCGA-ER-A2NH TCGA-ER-A3ET TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1YY 
       44.02        32.05        80.32         4.87        48.59       228.59 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZM 
       28.08         7.76        48.85        53.52        40.27       101.26 
TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 
      148.77       174.84        77.88        22.98         9.90        76.41 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        32.48 

subtype1 subtype2 subtype3 
    0.20     2.56     4.87 
subtype1 subtype2 subtype3 
  357.37   247.04   314.53 
subtype1 subtype2 subtype3 
  34.320   47.460   61.115 
[1] "0.2 - 357.4 (34.3)" "2.6 - 247.0 (47.5)" "4.9 - 314.5 (61.1)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D7V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  6             1
  subtype2                 17             0
  subtype3                  9             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        14                  48
  subtype2                                        14                  72
  subtype3                                        25                  44
D7V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           4       1       5        3        3        5         2
  subtype2           3       2       7        6       11        7         4
  subtype3           3       2       9        1       10        2         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         1         2         7          2          9         11
  subtype2         8         4        10          4         10         14
  subtype3         4         3        11          5          3         15
          vv
clus       STAGE IV
  subtype1        5
  subtype2        5
  subtype3        2
D7V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    18  8 12 14
  subtype2    21 25 20 21
  subtype3    11 24 14 15
D7V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 29 11 11 11
  subtype2 59 17 11 11
  subtype3 42 17  9  8
D7V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 58  1   1   1   2
  subtype2 95  2   1   1   2
  subtype3 73  1   0   0   1
D7V8, multiclass
D7V9, binary
          cls
clus        0  1
  subtype1 19 19
  subtype2 49 25
  subtype3 28 18
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   19
  subtype2   49   25
  subtype3   28   18
     clus
vv    subtype1 subtype2 subtype3
  NO        19       49       28
  YES       19       25       18
D7V10, binary
          cls
clus        0  1
  subtype1 13 56
  subtype2 11 93
  subtype3  7 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   56
  subtype2   11   93
  subtype3    7   71
     clus
vv    subtype1 subtype2 subtype3
  NO        13       11        7
  YES       56       93       71
D7V11, continuous
D7V12, binary
          cls
clus        0  1
  subtype1 33 36
  subtype2 39 65
  subtype3 23 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   36
  subtype2   39   65
  subtype3   23   55
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       39       23
  MALE         36       65       55

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 18  9
  subtype2 11 12
  subtype3 33 34
  subtype4 58 64
subtype1 subtype2 subtype3 subtype4 
      27       23       67      122 
subtype1 subtype2 subtype3 subtype4 
       9       12       34       64 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MR TCGA-D3-A3MV 
       28.08        22.55        25.38        49.25       103.59         5.39 
TCGA-D3-A51R TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EB-A44R 
       20.48        52.04        10.03        19.36        14.83         0.20 
TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB 
        1.35        36.07        12.03        11.31        23.90        39.39 
TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A19G 
        8.68         2.70       111.91        15.95        16.14       114.15 
TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
       20.38         0.20        84.72 

$subtype2
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MU TCGA-DA-A1I5 TCGA-EE-A20H 
        6.35        15.25         9.30        13.55        44.52         9.24 
TCGA-EE-A29R TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2ME 
        8.84        34.92        21.17         5.39        13.02        29.46 
TCGA-EE-A2MU TCGA-EE-A3JH TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A3ET 
        5.56        13.94         4.18        28.64        34.68         6.58 
TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z7 TCGA-FS-A1ZM TCGA-GN-A264 
        4.87         3.45         7.30        47.38        31.33 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      111.09        32.55        70.16        68.09         8.38        21.14 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
       88.50        69.90        11.41        56.19        99.55        33.11 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY TCGA-DA-A1I7 
       34.13        13.32        42.71        15.09        51.12        36.69 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A17Y TCGA-EE-A20C 
       25.15        17.56         0.13        11.57        10.55         4.34 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 
        7.96        37.97         8.12         6.48         8.68        25.28 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC 
       16.01        28.31        30.84         8.84        98.27        47.51 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A3AB TCGA-ER-A193 TCGA-ER-A195 
       44.22        14.53        29.65       122.73        31.40        18.64 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H 
        5.72        76.41        25.18         3.52        11.90        34.88 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH TCGA-FS-A1Z4 
       12.99        42.84        78.44        12.00        11.74        15.52 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZS 
        7.27         3.39         8.22        19.53        30.84        49.15 
TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 
       14.20         1.02         9.90         7.23        15.35        10.09 
TCGA-GN-A26A 
       12.16 

$subtype4
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
       16.47         8.52        98.76        31.40        10.26        85.32 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3CB 
       68.25        30.87         7.50        77.00        45.07        82.03 
TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E TCGA-D3-A51J TCGA-D3-A51K 
       61.38        24.00         6.28        80.22        41.13        17.72 
TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A3Z1 
        8.88        13.94        95.38         6.97        23.11         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.86        48.79        35.80        39.19        13.68         9.99 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A44Q TCGA-EB-A5UN 
        4.93        22.36         6.64         7.00         0.20         0.07 
TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 
        6.31         8.12         1.12        12.20         5.13         4.27 
TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G 
        5.13         1.18         9.90        11.15        38.63         8.55 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29S TCGA-EE-A29V 
        4.41         1.08        27.12         9.47         9.99         2.43 
TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GI 
        8.09         9.67         8.94        10.13        17.98         3.91 
TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 
       19.43        10.88        33.83         1.15         9.67         6.21 
TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
        9.53         7.96        63.42       111.78        56.02        25.08 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC 
       26.99        21.60        27.12        23.05       124.31        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3J5 TCGA-EE-A3JA TCGA-EE-A3JI 
        3.68         2.37        13.81        21.60        22.22        33.60 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19Q TCGA-ER-A19S 
       12.95        38.37         3.81        11.11         9.57        36.07 
TCGA-ER-A2ND TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN 
        1.87        13.05        12.62         9.04         1.71         5.95 
TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG 
       64.47        11.05        23.80        14.24        11.08         7.17 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT 
       12.92        12.89        52.11         8.68         8.81        40.64 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 
        8.68        27.39         0.82         5.23        53.82         7.36 
TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A267 
       28.73         5.98         2.27         0.13        24.85        16.21 
TCGA-GN-A268 TCGA-GN-A26D 
       15.39        14.70 

subtype1 subtype2 subtype3 subtype4 
    0.20     3.45     0.13     0.07 
subtype1 subtype2 subtype3 subtype4 
  114.15    47.38   122.73   124.31 
subtype1 subtype2 subtype3 subtype4 
  20.380   13.020   18.640   11.675 
[1] "0.2 - 114.2 (20.4)" "3.5 - 47.4 (13.0)"  "0.1 - 122.7 (18.6)"
[4] "0.1 - 124.3 (11.7)"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [61] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[121] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[145] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[157] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[163] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[187] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[235] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [61] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[121] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[145] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[157] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[163] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[187] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[235] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [61] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[121] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[145] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[157] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[163] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[187] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[223] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[235] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
D8V2, survival
          sevent
clus2       0  1
  subtype1 18 10
  subtype2 11 12
  subtype3 33 34
  subtype4 62 65
subtype1 subtype2 subtype3 subtype4 
      28       23       67      127 
subtype1 subtype2 subtype3 subtype4 
      10       12       34       65 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MR TCGA-D3-A3MV 
       28.08        31.59        31.27        50.86       103.59        21.47 
TCGA-D3-A51R TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A3F2 TCGA-DA-A3F8 
       51.68       136.11         6.38        20.38        28.60        15.68 
TCGA-EB-A44R TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 
       10.16        14.70       109.64        56.42        46.82        24.43 
TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG TCGA-EE-A3J8 
       47.54        67.13        28.80       203.01        23.47        34.32 
TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
      268.93       357.37         0.20        84.72 

$subtype2
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3MO TCGA-D3-A3MU TCGA-DA-A1I5 TCGA-EE-A20H 
       12.10        58.03         9.30        26.93       107.34       168.26 
TCGA-EE-A29R TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2ME 
       14.47       135.91       182.01        13.87        55.59       103.27 
TCGA-EE-A2MU TCGA-EE-A3JH TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A3ET 
       53.26       101.75         6.41        61.05       162.08        80.32 
TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1Z7 TCGA-FS-A1ZM TCGA-GN-A264 
        4.87        48.59         7.76       101.26       117.93 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.04       112.54        71.80        82.59        65.49        23.77 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
      115.53        69.90        11.87        56.19       115.59        33.11 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY TCGA-DA-A1I7 
       34.13        60.23        43.69        40.14       117.17        61.18 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A17Y TCGA-EE-A20C 
       53.92       215.44        17.85        29.82        27.22       151.23 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 
       63.32        47.84        37.35       345.96       171.52        78.94 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC 
       54.71        75.48       101.95        21.67       129.24        61.51 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A3AB TCGA-ER-A193 TCGA-ER-A195 
      103.17       204.62       103.56       122.73        31.40        35.44 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H 
        9.17        77.75        98.40        12.59        13.02       152.35 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH TCGA-FS-A1Z4 
      131.08        44.05        79.99        44.02        32.05        28.08 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZS 
       27.68        48.85        53.52        40.27        32.71       148.77 
TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 
      174.84        22.98         9.90         7.23        76.41        10.09 
TCGA-GN-A26A 
       32.48 

$subtype4
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
       16.57        16.67       121.22        76.47        43.40       103.10 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JG TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3CB 
      168.00        48.76       113.52       156.10        45.07       166.09 
TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E TCGA-D3-A51J TCGA-D3-A51K 
       86.93        24.53        13.84       161.85       131.90        18.38 
TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 
       10.03        15.06       110.89         7.43       125.19       151.53 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
       54.67         3.65        11.34         3.22        48.89        36.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      194.83       176.55        35.93        65.92        23.44        68.09 
TCGA-DA-A3F3 TCGA-EB-A44Q TCGA-EB-A5UL TCGA-EB-A5UN TCGA-EE-A17Z TCGA-EE-A180 
       10.49         0.92         3.55        38.86         8.65        94.98 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I 
       33.73        26.86        68.15         4.93        78.87        13.55 
TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L 
       80.61        13.97        39.62        72.03        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 
       44.35        18.58        55.89        25.87        17.92        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL 
       58.75        43.23       314.53        22.55        89.33        55.00 
TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MH 
       90.94        14.30        19.56        19.76        47.28        16.96 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       167.87        47.54       248.61        43.23 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
      136.44        41.59       124.31        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-EE-A3J5 TCGA-EE-A3JA TCGA-EE-A3JI TCGA-ER-A197 
       13.81       138.77        36.95        53.19       148.08        13.91 
TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND 
       50.73        48.89        26.37        50.89        37.25        23.34 
TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       16.34        31.27       247.04        33.21        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ 
      228.59       202.62        20.91        15.45         9.70        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU 
       23.93        74.73       133.55        11.41        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 
       49.48        27.06        27.02        77.79        66.67        28.73 
TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A267 TCGA-GN-A268 
       26.73        77.88        47.54       120.46        64.41        62.76 
TCGA-GN-A26D 
       39.58 

subtype1 subtype2 subtype3 subtype4 
    0.20     4.87     7.23     0.92 
subtype1 subtype2 subtype3 subtype4 
  357.37   182.01   345.96   314.53 
subtype1 subtype2 subtype3 subtype4 
  32.955   58.030   56.190   44.350 
[1] "0.2 - 357.4 (33.0)" "4.9 - 182.0 (58.0)" "7.2 - 346.0 (56.2)"
[4] "0.9 - 314.5 (44.4)"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
 [79] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[145] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[163] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[193] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[223] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[229] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[235] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
 [79] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[145] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[163] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[193] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[223] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[229] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[235] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
  [1] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
 [79] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[145] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[151] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[163] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[169] "subtype3" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[193] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[223] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[229] "subtype3" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[235] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4"
D8V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  3             0
  subtype2                  3             0
  subtype3                  6             0
  subtype4                 20             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                         9                  17
  subtype2                                         6                  16
  subtype3                                        17                  46
  subtype4                                        21                  85
D8V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       0       1        1        1        3         2
  subtype2           2       0       5        1        4        0         0
  subtype3           2       3       8        1        6        3         1
  subtype4           5       2       7        7       13        8         6
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         0         1         2          1          7          3
  subtype2         0         0         2          2          1          4
  subtype3         4         2        10          3          3         13
  subtype4         9         6        14          5         11         20
          vv
clus       STAGE IV
  subtype1        3
  subtype2        2
  subtype3        2
  subtype4        5
D8V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     6  3  6  8
  subtype2     2 11  3  3
  subtype3    15 15 10 12
  subtype4    27 28 27 27
D8V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 12  6  6  3
  subtype2 14  4  4  2
  subtype3 34 13  7 10
  subtype4 70 22 14 15
D8V7, multiclass
          vv
clus        M0  M1 M1A M1B M1C
  subtype1  25   1   1   1   0
  subtype2  21   1   0   0   1
  subtype3  63   1   0   0   1
  subtype4 117   1   1   1   3
D8V8, multiclass
D8V9, binary
          cls
clus        0  1
  subtype1 10  8
  subtype2 10  4
  subtype3 20 16
  subtype4 56 34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10    8
  subtype2   10    4
  subtype3   20   16
  subtype4   56   34
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        10       10       20       56
  YES        8        4       16       34
D8V10, binary
          cls
clus         0   1
  subtype1   5  24
  subtype2   2  23
  subtype3  12  57
  subtype4  12 116
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   24
  subtype2    2   23
  subtype3   12   57
  subtype4   12  116
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        2       12       12
  YES       24       23       57      116
D8V11, continuous
D8V12, binary
          cls
clus        0  1
  subtype1 11 18
  subtype2  9 16
  subtype3 23 46
  subtype4 52 76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   18
  subtype2    9   16
  subtype3   23   46
  subtype4   52   76
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       11        9       23       52
  MALE         18       16       46       76

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 50 31
  subtype2 37 52
  subtype3 33 36
subtype1 subtype2 subtype3 
      81       89       69 
subtype1 subtype2 subtype3 
      31       52       36 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QB TCGA-D3-A2J9 
       16.47        32.55        28.08        22.55        68.09        21.14 
TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JO 
       68.25        69.90        11.41        30.87        25.38        49.25 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
       33.11        82.03        13.32       103.59        13.55         5.39 
TCGA-D3-A51E TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T 
       80.22        15.09        41.13         8.88        20.48        13.94 
TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A1I8 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R 
       52.04        10.03        25.15        14.83         0.20         0.20 
TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20C TCGA-EE-A29P 
        0.13        11.57         1.35        12.20         4.34        12.03 
TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB 
        8.12         6.48         8.09        23.90         8.94        39.39 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       16.01        28.31        30.84         8.68        98.27         2.70 
TCGA-EE-A2MH TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AB 
        7.96       111.91        56.02        29.65        27.12       122.73 
TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A199 TCGA-ER-A19B 
       25.84         2.37        15.95        16.14         5.72        25.18 
TCGA-ER-A19E TCGA-ER-A19G TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NF 
       11.90       114.15        12.99        42.84        78.44        13.05 
TCGA-ER-A2NH TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZQ 
       11.74        23.80        15.52         7.27        20.38         8.68 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A4F8 TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO 
        8.68        27.39        14.20         0.20         0.13         7.23 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
       24.85        84.72        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A2JL 
        8.52        31.40        10.26         7.50         6.35        77.00 
TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51K TCGA-D3-A5GL 
       45.07        15.25        24.00         6.28        17.72        95.38 
TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        6.97        23.11         4.01         2.86        48.79        35.80 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 
       39.19        13.68         4.93        22.36         6.64         7.00 
TCGA-EB-A5UN TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 
        0.07         6.31         8.12         1.12         5.13         4.27 
TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        5.13         1.18         9.90        11.15        38.63         4.41 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A2GC TCGA-EE-A2GI 
        1.08        27.12         9.47         2.43        10.13         3.91 
TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 
       19.43        10.88        33.83         1.15         9.67         6.21 
TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
        9.53        63.42       111.78        25.08        26.99        21.60 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3J5 TCGA-EE-A3JA 
       23.05       124.31         3.68        13.81        21.60        22.22 
TCGA-EE-A3JH TCGA-EE-A3JI TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F 
       13.94        33.60        12.95        38.37         3.81        11.11 
TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A3ES TCGA-ER-A3PL 
       34.68         9.57        36.07         1.87         9.04         1.71 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ 
        5.95        64.47        14.24        11.08         7.17        12.92 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZT TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       12.89        52.11        40.64         0.82         5.23        53.82 
TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       28.73         5.98        31.33        16.21        15.39 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2JA 
      111.09        70.16        98.76        85.32         8.38        88.50 
TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F 
       56.19        99.55        34.13        61.38         9.30        42.71 
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-DA-A3F5 
       51.12         9.99        44.52        36.69        19.36        17.56 
TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29G 
       10.55        36.07         9.24         7.96        37.97         8.55 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
        8.84         9.99         8.68        11.31        25.28         9.67 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 
       17.98        34.92        21.17         5.39        13.02         8.84 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MU TCGA-ER-A193 
       47.51        29.46        44.22        14.53         5.56        31.40 
TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19J TCGA-ER-A19M 
       18.64        76.41         3.52        34.88         4.18        28.64 
TCGA-ER-A2NC TCGA-ER-A2NG TCGA-ER-A3ET TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1YY 
       12.00        12.62         6.58         4.87         3.45        11.05 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM 
        7.30         3.39         8.22        19.53        30.84        47.38 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F4 TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT 
        8.81        49.15         7.36         2.27         1.02         9.90 
TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
       15.35        10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.07     1.02 
subtype1 subtype2 subtype3 
  122.73   124.31   111.09 
subtype1 subtype2 subtype3 
   16.01    11.15    14.53 
[1] "0.1 - 122.7 (16.0)" "0.1 - 124.3 (11.2)" "1.0 - 111.1 (14.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D9V2, survival
          sevent
clus2       0  1
  subtype1 50 33
  subtype2 41 52
  subtype3 33 36
subtype1 subtype2 subtype3 
      83       93       69 
subtype1 subtype2 subtype3 
      33       52       36 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QB TCGA-D3-A2J9 
       16.57       112.54        28.08        31.59        82.59        23.77 
TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JO 
      168.00        69.90        11.87        48.76        31.27        50.86 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
       33.11       166.09        60.23       103.59        26.93        21.47 
TCGA-D3-A51E TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T 
      161.85        40.14       131.90        10.03        51.68        15.06 
TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A1I8 TCGA-DA-A3F8 TCGA-EB-A44Q 
      136.11         6.38        20.38        53.92        15.68         0.92 
TCGA-EB-A44R TCGA-EB-A5KH TCGA-EE-A17X TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20C 
       10.16        17.85        29.82        14.70        26.86       151.23 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2A6 
       56.42        37.35       345.96        17.92        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 
       47.54        54.71        75.48       101.95        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2MH TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A2MS 
       28.80        16.96       203.01       167.87       103.56       136.44 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3J8 
      122.73        25.84        26.73        23.47       138.77        34.32 
TCGA-ER-A199 TCGA-ER-A19B TCGA-ER-A19E TCGA-ER-A19G TCGA-ER-A19L TCGA-ER-A19N 
        9.17        98.40        13.02       268.93       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-ER-A2NH TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA 
       79.99        16.34        32.05       202.62        28.08        27.68 
TCGA-FS-A1ZC TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A4F8 TCGA-FW-A3I3 
      357.37       133.55        26.56        49.48       174.84         0.20 
TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
       47.54         7.23       120.46        84.72        39.58 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A2JL 
       16.67        76.47        43.40       113.52        12.10       156.10 
TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51K TCGA-D3-A5GL 
       45.07        58.03        24.53        13.84        18.38       110.89 
TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 
        7.43       125.19       151.53        54.67         3.65        11.34 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA 
        3.22        48.89        36.03       194.83       176.55        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A5UL TCGA-EB-A5UN TCGA-EE-A17Z 
       23.44        68.09        10.49         3.55        38.86         8.65 
TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I 
       94.98        33.73        68.15         4.93        78.87        13.55 
TCGA-EE-A29B TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       80.61        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL 
       18.58        25.87        43.23        22.55        89.33        55.00 
TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MJ 
       90.94        14.30        19.56        19.76        47.28        96.23 
TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A3AA 
      144.76        47.54       248.61        43.23        41.59       124.31 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3J5 TCGA-EE-A3JA TCGA-EE-A3JH TCGA-EE-A3JI 
        3.68        13.81        36.95        53.19       101.75       148.08 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19P TCGA-ER-A19Q 
       13.91        50.73        48.89        26.37       162.08        50.89 
TCGA-ER-A19S TCGA-ER-A2ND TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW 
       37.25        23.34       247.04        33.21        80.48       216.92 
TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       20.91        15.45         9.70        47.38        23.93        74.73 
TCGA-FS-A1ZT TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F5 TCGA-FS-A4FB 
       53.16        27.06        27.02        77.79        28.73        26.73 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
      117.93        64.41        62.76 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2JA 
      112.04        71.80       121.22       103.10        65.49       115.53 
TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F 
       56.19       115.59        34.13        86.93         9.30        43.69 
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-DA-A3F5 
      117.17        35.93       107.34        61.18        28.60       215.44 
TCGA-EE-A17Y TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29G 
       27.22       109.64       168.26        63.32        47.84        72.03 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
       14.47        55.89       171.52        46.82        78.94        39.25 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 
      314.53       135.91       182.01        13.87        55.59        21.67 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MU TCGA-ER-A193 
       61.51       103.27       103.17       204.62        53.26        31.40 
TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19J TCGA-ER-A19M 
       35.44        77.75        12.59       152.35         6.41        61.05 
TCGA-ER-A2NC TCGA-ER-A2NG TCGA-ER-A3ET TCGA-FR-A69P TCGA-FS-A1YX TCGA-FS-A1YY 
       44.02        31.27        80.32         4.87        48.59       228.59 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM 
        7.76        48.85        53.52        40.27        32.71       101.26 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F4 TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT 
       11.41       148.77        66.67        77.88        22.98         9.90 
TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
       76.41        10.09        32.48 

subtype1 subtype2 subtype3 
    0.20     2.56     4.87 
subtype1 subtype2 subtype3 
  357.37   248.61   314.53 
subtype1 subtype2 subtype3 
   47.54    43.23    61.05 
[1] "0.2 - 357.4 (47.5)" "2.6 - 248.6 (43.2)" "4.9 - 314.5 (61.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D9V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 10             1
  subtype2                 14             0
  subtype3                  8             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        16                  59
  subtype2                                        11                  67
  subtype3                                        26                  38
D9V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           6       4       7        6        3        5         1
  subtype2           2       0       6        3       12        5         3
  subtype3           2       1       8        1        9        4         5
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         1         4        11          2          8         14
  subtype2         8         3        10          4          9         14
  subtype3         4         2         7          5          5         12
          vv
clus       STAGE IV
  subtype1        4
  subtype2        4
  subtype3        4
D9V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    26 10  9 19
  subtype2    17 21 20 20
  subtype3     7 26 17 11
D9V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 41 13 11 13
  subtype2 49 18 11  9
  subtype3 40 14  9  8
D9V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 75  1   1   1   1
  subtype2 85  1   1   1   2
  subtype3 66  2   0   0   2
D9V8, multiclass
D9V9, binary
          cls
clus        0  1
  subtype1 25 22
  subtype2 44 23
  subtype3 27 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   22
  subtype2   44   23
  subtype3   27   17
     clus
vv    subtype1 subtype2 subtype3
  NO        25       44       27
  YES       22       23       17
D9V10, binary
          cls
clus        0  1
  subtype1 16 70
  subtype2  9 84
  subtype3  6 66
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   70
  subtype2    9   84
  subtype3    6   66
     clus
vv    subtype1 subtype2 subtype3
  NO        16        9        6
  YES       70       84       66
D9V11, continuous
D9V12, binary
          cls
clus        0  1
  subtype1 38 48
  subtype2 34 59
  subtype3 23 49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38   48
  subtype2   34   59
  subtype3   23   49
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       38       34       23
  MALE         48       59       49

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 15  8
  subtype2 46 47
  subtype3 41 37
  subtype4 18 27
subtype1 subtype2 subtype3 subtype4 
      23       93       78       45 
subtype1 subtype2 subtype3 subtype4 
       8       47       37       27 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MV TCGA-D3-A51R 
       28.08        22.55        25.38        49.25         5.39        20.48 
TCGA-D3-A5GN TCGA-EB-A44R TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 
       52.04         0.20         1.35        36.07        12.03        11.31 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG 
       23.90        39.39         8.68         2.70       111.91        15.95 
TCGA-EE-A3J8 TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
       16.14       114.15        20.38         0.20        84.72 

$subtype2
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF 
       16.47         8.52        31.40        10.26        68.25        30.87 
TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3CB TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E 
       77.00        45.07        82.03        24.00         6.28        80.22 
TCGA-D3-A51K TCGA-D3-A51T TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 
       17.72        13.94         6.97        23.11         4.01         2.86 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F3 
       48.79        35.80        13.68         4.93        22.36         7.00 
TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 
       14.83         0.20        11.57         6.31         8.12         1.12 
TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29E 
       12.20         5.13         4.27         5.13        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29X 
        4.41         1.08        27.12         9.47         8.84         8.09 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR 
        8.94        10.13         3.91        10.88        33.83         1.15 
TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
        9.67         6.21         9.53         7.96        63.42       111.78 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
       56.02        25.08        26.99        21.60        27.12        23.05 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3J5 
      124.31        25.84         3.68         2.37        13.81        21.60 
TCGA-EE-A3JA TCGA-EE-A3JI TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19S TCGA-ER-A2NF 
       22.22        33.60        38.37        11.11        36.07        13.05 
TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 
        9.04         1.71         5.95        64.47        23.80        14.24 
TCGA-FS-A1ZG TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZW 
        7.17        12.89        52.11         8.68         8.68        27.39 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FW-A3TU 
        0.82         5.23        53.82        28.73         5.98         0.13 
TCGA-GN-A262 TCGA-GN-A268 TCGA-GN-A26D 
       24.85        15.39        14.70 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      111.09        32.55        70.16        68.09         8.38        21.14 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
       88.50        69.90        11.41        56.19        99.55        33.11 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H 
       34.13        13.32         9.30       103.59        42.71        15.09 
TCGA-D3-A51J TCGA-D3-A51N TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 
       41.13         8.88        51.12        36.69        25.15        19.36 
TCGA-DA-A3F5 TCGA-EB-A5KH TCGA-EE-A17Y TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A 
       17.56         0.13        10.55         4.34         9.24         7.96 
TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2GE 
       37.97         8.12         6.48         8.68        25.28        34.92 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC 
       16.01        28.31        30.84         8.84        98.27        47.51 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AB TCGA-ER-A193 
       44.22        14.53        29.65         5.56       122.73        31.40 
TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
       18.64         5.72        76.41        25.18         3.52        11.90 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH 
       34.88        12.99        42.84        78.44        12.00        11.74 
TCGA-FR-A69P TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
        4.87        11.05        15.52         7.30         7.27         3.39 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 
        8.22        19.53        30.84        47.38        49.15        14.20 
TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
        1.02         9.90         7.23        15.35        10.09        12.16 

$subtype4
TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       98.76        85.32         7.50         6.35        15.25        61.38 
TCGA-D3-A3MU TCGA-D3-A5GL TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       13.55        95.38        10.03        39.19         9.99        44.52 
TCGA-DA-A1IC TCGA-EB-A5UN TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29G TCGA-EE-A29S 
        6.64         0.07         1.18         9.90         8.55         9.99 
TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GP 
        2.43         9.67        17.98        21.17        19.43         5.39 
TCGA-EE-A2GS TCGA-EE-A2ME TCGA-EE-A3JH TCGA-ER-A197 TCGA-ER-A19C TCGA-ER-A19J 
       13.02        29.46        13.94        12.95         3.81         4.18 
TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2ND TCGA-ER-A2NG TCGA-ER-A3ET 
       28.64        34.68         9.57         1.87        12.62         6.58 
TCGA-FS-A1YX TCGA-FS-A1ZF TCGA-FS-A1ZJ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A4F4 
        3.45        11.08        12.92         8.81        40.64         7.36 
TCGA-FS-A4FD TCGA-GN-A264 TCGA-GN-A267 
        2.27        31.33        16.21 

subtype1 subtype2 subtype3 subtype4 
    0.20     0.13     0.13     0.07 
subtype1 subtype2 subtype3 subtype4 
  114.15   124.31   122.73    98.76 
subtype1 subtype2 subtype3 subtype4 
   20.48    13.05    18.10    11.08 
[1] "0.2 - 114.2 (20.5)" "0.1 - 124.3 (13.1)" "0.1 - 122.7 (18.1)"
[4] "0.1 - 98.8 (11.1)" 
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype4" "subtype2" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[187] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[223] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[235] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype4" "subtype2" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[187] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[223] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[235] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
 [91] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
[103] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype4" "subtype2" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[175] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[187] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[223] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[235] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
D10V2, survival
          sevent
clus2       0  1
  subtype1 15  9
  subtype2 50 48
  subtype3 41 37
  subtype4 18 27
subtype1 subtype2 subtype3 subtype4 
      24       98       78       45 
subtype1 subtype2 subtype3 subtype4 
       9       48       37       27 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MV TCGA-D3-A51R 
       28.08        31.59        31.27        50.86        21.47        51.68 
TCGA-D3-A5GN TCGA-D9-A1JX TCGA-EB-A44R TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P 
      136.11         6.38        10.16        14.70       109.64        56.42 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML 
       46.82        24.43        47.54        67.13        28.80       203.01 
TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
       23.47        34.32       268.93       357.37         0.20        84.72 

$subtype2
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF 
       16.57        16.67        76.47        43.40       168.00        48.76 
TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3CB TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E 
      156.10        45.07       166.09        24.53        13.84       161.85 
TCGA-D3-A51K TCGA-D3-A51T TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 
       18.38        15.06         7.43       125.19       151.53        54.67 
TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I2 
        3.65        11.34         3.22        48.89        36.03       176.55 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A5UL 
       65.92        23.44        10.49        15.68         0.92         3.55 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A180 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 
       29.82         8.65        94.98        33.73        26.86        68.15 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        4.93        78.87        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GC 
       44.35        18.58        14.47        17.92        58.75        43.23 
TCGA-EE-A2GI TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 
       22.55        55.00        90.94        14.30        19.56        19.76 
TCGA-EE-A2MD TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
       47.28        16.96        96.23       144.76       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC 
      248.61        43.23       136.44        41.59       124.31        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-EE-A3J5 TCGA-EE-A3JA 
        3.68        26.73        13.81       138.77        36.95        53.19 
TCGA-EE-A3JI TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19S TCGA-ER-A2NF TCGA-ER-A3ES 
      148.08        50.73        26.37        37.25        16.34       247.04 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZG 
       33.21        80.48       216.92       202.62        20.91         9.70 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       23.93        74.73       133.55        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FW-A3TU TCGA-GN-A262 
       27.02        77.79        28.73        26.73        47.54       120.46 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      112.04       112.54        71.80        82.59        65.49        23.77 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
      115.53        69.90        11.87        56.19       115.59        33.11 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H 
       34.13        60.23         9.30       103.59        43.69        40.14 
TCGA-D3-A51J TCGA-D3-A51N TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 
      131.90        10.03       117.17        61.18        53.92        28.60 
TCGA-DA-A3F5 TCGA-EB-A5KH TCGA-EE-A17Y TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A 
      215.44        17.85        27.22       151.23       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2GE 
       47.84        37.35       345.96       171.52        78.94       135.91 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC 
       54.71        75.48       101.95        21.67       129.24        61.51 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AB TCGA-ER-A193 
      103.17       204.62       103.56        53.26       122.73        31.40 
TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19B TCGA-ER-A19D TCGA-ER-A19E 
       35.44         9.17        77.75        98.40        12.59        13.02 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH 
      152.35       131.08        44.05        79.99        44.02        32.05 
TCGA-FR-A69P TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
        4.87       228.59        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 
       53.52        40.27        32.71       101.26       148.77       174.84 
TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
       22.98         9.90         7.23        76.41        10.09        32.48 

$subtype4
TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2JG TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
      121.22       103.10       113.52        12.10        58.03        86.93 
TCGA-D3-A3MU TCGA-D3-A5GL TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I4 TCGA-DA-A1I5 
       26.93       110.89        20.38       194.83        35.93       107.34 
TCGA-DA-A1IC TCGA-EB-A5UN TCGA-EE-A20I TCGA-EE-A29B TCGA-EE-A29G TCGA-EE-A29S 
       68.09        38.86        13.55        80.61        72.03        55.89 
TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GP 
       25.87        39.25       314.53       182.01        89.33        13.87 
TCGA-EE-A2GS TCGA-EE-A2ME TCGA-EE-A3JH TCGA-ER-A197 TCGA-ER-A19C TCGA-ER-A19J 
       55.59       103.27       101.75        13.91        48.89         6.41 
TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2ND TCGA-ER-A2NG TCGA-ER-A3ET 
       61.05       162.08        50.89        23.34        31.27        80.32 
TCGA-FS-A1YX TCGA-FS-A1ZF TCGA-FS-A1ZJ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A4F4 
       48.59        15.45        47.38        11.41        53.16        66.67 
TCGA-FS-A4FD TCGA-GN-A264 TCGA-GN-A267 
       77.88       117.93        64.41 

subtype1 subtype2 subtype3 subtype4 
    0.20     0.92     4.87     6.41 
subtype1 subtype2 subtype3 subtype4 
  357.37   248.61   345.96   314.53 
subtype1 subtype2 subtype3 subtype4 
  40.570   38.415   58.210   58.030 
[1] "0.2 - 357.4 (40.6)" "0.9 - 248.6 (38.4)" "4.9 - 346.0 (58.2)"
[4] "6.4 - 314.5 (58.0)"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
[121] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[193] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[229] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
[121] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[193] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[229] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
 [31] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype4" "subtype3"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
[121] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[193] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype4" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[229] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
D10V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  3             0
  subtype2                 13             1
  subtype3                  8             0
  subtype4                  8             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                         6                  16
  subtype2                                        10                  74
  subtype3                                        23                  50
  subtype4                                        14                  24
D10V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       0       1        1        1        3         2
  subtype2           5       2       5        7       10        7         3
  subtype3           3       3      10        1        6        3         2
  subtype4           1       0       5        1        7        1         2
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         0         1         1          1          5          3
  subtype2         7         3        11          2          9         15
  subtype3         4         2        14          3          4         15
  subtype4         2         3         2          5          4          7
          vv
clus       STAGE IV
  subtype1        2
  subtype2        3
  subtype3        3
  subtype4        4
D10V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     5  2  6  6
  subtype2    21 21 19 20
  subtype3    18 18 11 14
  subtype4     6 16 10 10
D10V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 12  5  4  2
  subtype2 56 16 11 10
  subtype3 38 16 10 12
  subtype4 24  8  6  6
D10V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 22  1   0   1   0
  subtype2 89  1   1   1   1
  subtype3 73  1   0   0   2
  subtype4 42  1   1   0   2
D10V8, multiclass
D10V9, binary
          cls
clus        0  1
  subtype1  8  7
  subtype2 44 23
  subtype3 23 17
  subtype4 21 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    7
  subtype2   44   23
  subtype3   23   17
  subtype4   21   15
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         8       44       23       21
  YES        7       23       17       15
D10V10, binary
          cls
clus        0  1
  subtype1  4 21
  subtype2  9 89
  subtype3 16 65
  subtype4  2 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   21
  subtype2    9   89
  subtype3   16   65
  subtype4    2   45
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         4        9       16        2
  YES       21       89       65       45
D10V11, continuous
D10V12, binary
          cls
clus        0  1
  subtype1 11 14
  subtype2 40 58
  subtype3 26 55
  subtype4 18 29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   14
  subtype2   40   58
  subtype3   26   55
  subtype4   18   29
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       11       40       26       18
  MALE         14       58       55       29
> q(save="no")
