		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
PPP2R1A	27 (11%)	221	0.075984	1	0.0518	1	0.012093	1	0.012874	1	0.1409	1	0.31271	1	0.0057705	1	0.005307	1	0.02566	1	0.035606	1	0.067254	1	0.012696	1
PIK3CA	132 (53%)	116	0.8345	1	0.19816	1	0.47476	1	0.6765	1	0.36637	1	0.36468	1	0.14785	1	0.98899	1	0.74576	1	0.32035	1	0.41021	1	0.75285	1
CTNNB1	74 (30%)	174	5.6774e-07	0.000202	0.0011477	0.389	8.7518e-06	0.00309	0.0031504	1	1.289e-10	4.65e-08	0.11185	1	1.3979e-20	5.2e-18	3.0179e-06	0.00107	1.9791e-11	7.16e-09	0.13753	1	0.023186	1	0.0037899	1
PIK3R1	83 (33%)	165	0.066902	1	0.021768	1	0.00052317	0.18	3.3189e-05	0.0116	0.6489	1	0.87686	1	0.00011276	0.0391	2.2413e-05	0.00787	0.013314	1	0.14581	1	0.012574	1	0.00057494	0.197
PRKAR1B	4 (2%)	244	NA	NA	NA	NA	0.98808	1	0.50869	1	0.88699	1	1	1	0.38712	1	0.26186	1	0.48162	1	0.36995	1	0.79675	1	0.15525	1
PTEN	161 (65%)	87	0.0044164	1	0.00036209	0.125	1.8202e-20	6.75e-18	1.7921e-12	6.52e-10	0.025685	1	0.18335	1	4.4512e-21	1.66e-18	2.8646e-17	1.06e-14	7.6453e-16	2.81e-13	1.4371e-13	5.26e-11	5.3495e-09	1.92e-06	8.554e-14	3.14e-11
KRAS	53 (21%)	195	0.203	1	0.0006492	0.221	0.0060591	1	0.12251	1	0.29674	1	0.85484	1	0.0075538	1	0.037626	1	0.00062793	0.215	0.56381	1	0.14339	1	0.45723	1
TP53	69 (28%)	179	3.7571e-05	0.0131	2.4479e-07	8.74e-05	4.3549e-30	1.64e-27	2.5331e-12	9.2e-10	2.0063e-05	0.00706	0.0014012	0.469	4.0922e-24	1.53e-21	6.5332e-21	2.44e-18	3.53e-17	1.3e-14	1.5195e-13	5.55e-11	6.6469e-09	2.38e-06	1.2355e-09	4.45e-07
FBXW7	39 (16%)	209	0.225	1	0.69213	1	0.34285	1	0.075748	1	0.10644	1	0.10694	1	0.023683	1	0.014833	1	0.13461	1	0.10379	1	0.35087	1	0.022785	1
CTCF	44 (18%)	204	0.14875	1	0.42097	1	0.00044066	0.152	0.043279	1	0.045801	1	1	1	0.00083443	0.284	0.0012147	0.411	0.0094879	1	0.0031616	1	0.0079213	1	0.10329	1
ARID1A	83 (33%)	165	0.26564	1	0.010954	1	7.1065e-07	0.000252	0.22697	1	0.02713	1	1	1	0.0026653	0.888	0.045184	1	0.022561	1	0.052976	1	0.066387	1	0.013854	1
SPOP	21 (8%)	227	0.34932	1	1	1	0.84955	1	0.35577	1	0.83433	1	0.41497	1	0.35177	1	0.36238	1	0.03431	1	0.46168	1	0.61031	1	0.69201	1
ARID5B	29 (12%)	219	0.96088	1	0.45933	1	0.042655	1	0.13611	1	0.16398	1	0.1818	1	0.05308	1	0.067566	1	0.045185	1	0.34643	1	0.26303	1	0.72439	1
FGFR2	31 (12%)	217	0.38513	1	0.29313	1	0.61131	1	0.91427	1	0.96987	1	0.82869	1	0.52677	1	0.56524	1	0.87587	1	0.59014	1	0.64416	1	0.81975	1
NFE2L2	15 (6%)	233	0.090516	1	0.83347	1	0.0063579	1	0.63063	1	0.2479	1	1	1	0.01339	1	0.57352	1	0.39195	1	0.77515	1	0.26303	1	0.72439	1
CCND1	14 (6%)	234	0.631	1	0.83347	1	0.15377	1	0.49484	1	0.51372	1	0.50942	1	0.63455	1	0.26853	1	0.12395	1	0.61234	1	0.43879	1	0.85301	1
CHD4	35 (14%)	213	0.098645	1	0.28356	1	0.77604	1	0.85174	1	0.96961	1	0.28657	1	0.87203	1	0.47935	1	0.73855	1	0.59014	1	0.4045	1	0.9699	1
FAM9A	14 (6%)	234	NA	NA	NA	NA	0.8865	1	0.26967	1	0.17795	1	0.022725	1	0.056164	1	0.064976	1	0.30797	1	0.042431	1	0.023731	1	0.14875	1
MORC4	20 (8%)	228	0.58319	1	0.17985	1	0.34013	1	0.27973	1	0.21229	1	0.033158	1	0.0082114	1	0.26559	1	0.31536	1	0.18957	1	0.32178	1	0.039623	1
CASP8	17 (7%)	231	0.38127	1	0.059544	1	0.20356	1	0.62611	1	0.15421	1	0.26865	1	0.37455	1	0.12563	1	0.15155	1	0.18906	1	0.36711	1	0.91036	1
FOXA2	12 (5%)	236	NA	NA	NA	NA	0.30424	1	0.7954	1	0.071861	1	0.74395	1	0.50576	1	0.58878	1	0.058212	1	0.80024	1	0.68123	1	0.33157	1
ABI1	4 (2%)	244	NA	NA	NA	NA	0.82055	1	NA	NA	0.64001	1	0.63688	1	0.68147	1	0.26186	1	0.6867	1	0.65513	1	NA	NA	NA	NA
DNER	18 (7%)	230	0.1912	1	0.051469	1	0.013034	1	0.59682	1	0.021717	1	0.58145	1	0.12628	1	0.093592	1	0.7846	1	0.15279	1	0.68123	1	0.91036	1
BCOR	30 (12%)	218	0.68711	1	0.4049	1	0.005773	1	0.024617	1	0.51211	1	0.50027	1	0.001341	0.451	0.3226	1	0.049524	1	0.092165	1	0.8665	1	0.17613	1
BRS3	15 (6%)	233	0.53592	1	0.15102	1	0.33903	1	0.51936	1	0.3924	1	0.54035	1	0.1077	1	0.0029504	0.98	0.39306	1	0.0052725	1	0.56232	1	0.34334	1
SGK1	15 (6%)	233	0.38127	1	0.059544	1	0.43003	1	0.62525	1	0.22598	1	0.095402	1	0.030091	1	0.89251	1	0.43051	1	1	1	0.68703	1	0.85301	1
NRAS	9 (4%)	239	NA	NA	NA	NA	0.7494	1	NA	NA	0.31592	1	1	1	0.56033	1	0.9084	1	0.60427	1	0.21274	1	NA	NA	NA	NA
TIAL1	11 (4%)	237	0.38127	1	0.4049	1	0.36225	1	0.063416	1	0.56444	1	0.74395	1	0.0054541	1	0.012823	1	0.81245	1	1	1	0.47723	1	0.72439	1
SIN3A	21 (8%)	227	NA	NA	NA	NA	0.026613	1	0.59803	1	0.0060674	1	0.1293	1	0.0026148	0.873	0.022628	1	0.1602	1	0.0059488	1	0.51736	1	0.46513	1
SLC48A1	5 (2%)	243	NA	NA	NA	NA	0.7363	1	0.63905	1	0.80339	1	0.37153	1	0.87592	1	0.84913	1	0.72569	1	0.68582	1	0.79675	1	0.45838	1
RNF43	12 (5%)	236	0.13313	1	0.15102	1	0.44341	1	0.3775	1	0.29629	1	1	1	0.031984	1	2.5482e-05	0.00892	0.12868	1	0.44514	1	0.34872	1	0.48394	1
ZFHX3	44 (18%)	204	0.37543	1	0.029136	1	0.094005	1	0.064832	1	0.31768	1	0.1793	1	0.59232	1	0.11475	1	0.20705	1	0.61415	1	0.84674	1	0.52574	1
RB1	20 (8%)	228	0.63931	1	1	1	0.31026	1	0.62611	1	0.12007	1	0.31271	1	0.58278	1	0.27096	1	0.95549	1	0.0012615	0.425	0.85386	1	1	1
