
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6158604/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6158604/transformed.cor.cli.txt"

nPatients in clinical file=33, in cluster file=56, common to both=32
[1] "Reduce the number of clustering variables from 80 to 74."
[1] 74 32
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               13                19 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               13                19 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16                16 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16                16 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               11                21 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               11                21 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               10                22 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               10                22 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                26 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                26 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               10                22 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               10                22 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                29 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                29 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                19 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                19 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                29 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                29 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               15                17 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               15                17 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               14                18 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               14                18 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                9                23 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                9                23 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                7                25 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                7                25 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                22 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                22 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                17 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                17 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4                28 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4                28 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                10                 22 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                10                 22 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 9                 23 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 9                 23 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 29 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 29 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 28 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 28 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                 21 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                 21 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 27 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 27 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                 23 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                 23 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                 25 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                 25 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 28 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 28 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 27 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 27 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 22 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 22 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                 23 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                 23 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                 24 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                 24 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                 20 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                 20 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                16                 16 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                16                 16 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                23                  9 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                23                  9 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                26                  6 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                26                  6 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                 22 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                 22 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 28 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 28 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9                23 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9                23 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                27 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                27 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                5                27 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                5                27 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                21 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                21 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9                23 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9                23 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               20                12 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               20                12 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               22                10 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               22                10 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6                26 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6                26 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                9                23 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                9                23 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                3                29 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                3                29 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                4                28 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                4                28 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6                26 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6                26 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                7                25 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                7                25 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12                20 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12                20 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                27 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                27 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               16                16 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               16                16 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               19                13 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               19                13 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                14                 18 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                14                 18 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                11                 21 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                11                 21 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                16                 16 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                16                 16 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                15                 17 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                15                 17 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                10                 22 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                10                 22 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 9                 23 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 9                 23 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                14                 18 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                14                 18 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 14 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 14 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                18                 14 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                18                 14 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                18                 14 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                18                 14 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                22                 10 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                22                 10 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                19                 13 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                19                 13 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 23 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 23 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 24 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 24 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 24 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 24 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                11                 21 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                11                 21 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 9                 23 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 9                 23 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 28 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 28 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 29 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 29 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 8                 24 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 8                 24 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 11 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 11 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12                20 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12                20 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 32 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
          NA           NA         1439           NA           NA          730 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
          NA           NA         2118           NA         1816           NA 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
          NA           NA           NA          497          424          438 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
         219          145          295         2261          833           NA 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
          NA         2596           NA           NA          461           NA 
TCGA-NG-A4VW TCGA-QM-A5NM 
          NA          165 
Variable 1:'AGE':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 32 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED    6  7
  1P GAIN WILD-TYPE  7 12
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               13                19 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                7                12 
$`1P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RV TCGA-N5-A59F 
       52.27        47.31        18.08         4.87        59.70        11.87 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QY TCGA-ND-A4W6 
       13.71        13.94        14.40         7.20         3.72        10.42 
TCGA-QM-A5NM 
        5.42 

$`1P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
        4.64        24.00        22.52        29.95        69.63        50.17 
TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       14.70        26.63        16.34         4.77         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       27.39         6.64        85.35        23.47        15.16         5.49 
TCGA-NG-A4VW 
       31.17 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             3.72              4.64 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            59.70             85.35 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            13.71             23.47 
[1] "3.7 - 59.7 (13.7)" "4.6 - 85.3 (23.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED    8  8
  1Q GAIN WILD-TYPE  5 11
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16                16 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                11 
$`1Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.27        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        11.87        13.71        13.94        14.40         7.20 
TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72        10.42        31.17         5.42 

$`1Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PI 
        4.64        22.52        29.95        50.17        14.70        26.63 
TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 
       16.34         4.77         9.70        74.33        27.39         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       85.35        23.47        15.16         5.49 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             3.72              4.64 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            69.63             85.35 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            14.17             19.43 
[1] "3.7 - 69.6 (14.2)" "4.6 - 85.3 (19.4)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
[1] "hr=" "1.4"
D2V2, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED    1 10
  2P GAIN WILD-TYPE 12  9
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               11                21 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               10                 9 
$`2P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       18.08        29.95        50.17        14.70        11.87        13.71 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
        9.70        74.33         3.72        10.42        23.47 

$`2P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        26.63        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC 
        7.20         4.77        27.39         6.64        85.35        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             3.72              4.64 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            74.33             85.35 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            14.70             16.34 
[1] "3.7 - 74.3 (14.7)" "4.6 - 85.3 (16.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D3V2, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    1  9
  2Q GAIN WILD-TYPE 12 10
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               10                22 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                9                10 
$`2Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PL 
       52.27        18.08        29.95        50.17        11.87        13.71 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4WA 
        9.70        74.33         3.72        23.47 

$`2Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
        4.64        47.31         4.87        24.00        22.52        69.63 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       59.70        14.70        26.63        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
        7.20         4.77        27.39         6.64        85.35        10.42 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             3.72              4.64 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            74.33             85.35 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           20.775            14.930 
[1] "3.7 - 74.3 (20.8)" "4.6 - 85.3 (14.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED    2  4
  3P GAIN WILD-TYPE 11 15
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                26 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                15 
$`3P GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
       13.94         4.77        27.39        10.42        23.47        31.17 

$`3P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       11.87        26.63        13.71        16.34        14.40         7.20 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC 
        9.70        74.33         3.72         6.64        85.35        15.16 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             4.77              3.72 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            31.17             85.35 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           18.705            15.750 
[1] "4.8 - 31.2 (18.7)" "3.7 - 85.3 (15.8)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED    5  5
  3Q GAIN WILD-TYPE  8 14
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               10                22 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                5                14 
$`3Q GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW 
       24.00        22.52        13.94         7.20         4.77        74.33 
TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
       27.39        10.42        23.47        31.17 

$`3Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.27         4.64        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       69.63        50.17        59.70        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QY TCGA-NA-A4R1 
       13.71        16.34        14.40         9.70         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        15.16         5.49         5.42 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             4.77              3.72 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            74.33             85.35 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           22.995            14.930 
[1] "4.8 - 74.3 (23.0)" "3.7 - 85.3 (14.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D6V2, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED    2  1
  4P GAIN WILD-TYPE 11 18
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                29 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                18 
$`4P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PP TCGA-ND-A4W6 
       59.70         7.20        10.42 

$`4P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94        14.40         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         5.49        31.17         5.42 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             7.20              3.72 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            59.70             85.35 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            10.42             16.34 
[1] "7.2 - 59.7 (10.4)" "3.7 - 85.3 (16.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D7V2, continuous

Clustering(8) Variable = 5P GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED    7  6
  5P GAIN WILD-TYPE  6 13
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                19 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6                13 
$`5P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PN 
       52.27        69.63        50.17        14.70        11.87        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A5I1 TCGA-ND-A4W6 
       14.40         7.20         4.77        74.33        85.35        10.42 
TCGA-NG-A4VW 
       31.17 

$`5P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.64        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S 
       29.95        59.70        26.63        13.71        16.34         9.70 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       27.39         3.72         6.64        23.47        15.16         5.49 
TCGA-QM-A5NM 
        5.42 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             4.77              3.72 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            85.35             59.70 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            14.70             16.34 
[1] "4.8 - 85.3 (14.7)" "3.7 - 59.7 (16.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D8V2, continuous

Clustering(9) Variable = 5Q GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    1  2
  5Q GAIN WILD-TYPE 12 17
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                29 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2                17 
$`5Q GAIN MUTATED`
TCGA-N5-A59E TCGA-NA-A5I1 TCGA-NG-A4VW 
       14.70        85.35        31.17 

$`5Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        59.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       26.63        13.71        16.34        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
        4.77         9.70        74.33        27.39         3.72         6.64 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       10.42        23.47        15.16         5.49         5.42 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            14.70              3.72 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            85.35             74.33 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            31.17             15.16 
[1] "14.7 - 85.3 (31.2)" "3.7 - 74.3 (15.2)" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous

Clustering(10) Variable = 6P GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED    6  9
  6P GAIN WILD-TYPE  7 10
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               15                17 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                9                10 
$`6P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.27        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PO TCGA-NA-A4QW 
       50.17        59.70        14.70        13.71        14.40        74.33 
TCGA-NA-A4QX TCGA-ND-A4WA TCGA-ND-A4WF 
       27.39        23.47         5.49 

$`6P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PM 
        4.64        22.52        29.95        11.87        26.63        16.34 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QY TCGA-NA-A4R1 
       13.94         7.20         4.77         9.70         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        10.42        15.16        31.17         5.42 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             4.87              3.72 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            74.33             85.35 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            24.00             11.87 
[1] "4.9 - 74.3 (24.0)" "3.7 - 85.3 (11.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D10V2, continuous

Clustering(11) Variable = 6Q GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  6Q GAIN MUTATED    6  8
  6Q GAIN WILD-TYPE  7 11
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               14                18 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                8                11 
$`6Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.27        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PO TCGA-NA-A4QW TCGA-NA-A4QX 
       50.17        59.70        14.70        14.40        74.33        27.39 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`6Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
        4.64        22.52        29.95        11.87        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QY 
       16.34        13.94         7.20         4.77         9.70         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
        6.64        85.35        10.42        15.16        31.17         5.42 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             4.87              3.72 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            74.33             85.35 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           25.695            12.790 
[1] "4.9 - 74.3 (25.7)" "3.7 - 85.3 (12.8)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D11V2, continuous

Clustering(12) Variable = 7P GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED    2  7
  7P GAIN WILD-TYPE 11 12
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                9                23 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                7                12 
$`7P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N5-A4RU TCGA-NA-A4QX TCGA-NA-A4QY 
       52.27         4.64        24.00        50.17        27.39         3.72 
TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-QM-A5NM 
       10.42         5.49         5.42 

$`7P GAIN WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       47.31        18.08         4.87        22.52        29.95        69.63 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       59.70        14.70        11.87        26.63        13.71        16.34 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       13.94        14.40         7.20         4.77         9.70        74.33 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        85.35        23.47        15.16        31.17 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             3.72              4.77 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            52.27             85.35 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            10.42             16.34 
[1] "3.7 - 52.3 (10.4)" "4.8 - 85.3 (16.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
[1] "hr=" "1.8"
D12V2, continuous

Clustering(13) Variable = 7Q GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED    2  5
  7Q GAIN WILD-TYPE 11 14
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                7                25 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                5                14 
$`7Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RN TCGA-NA-A4QX TCGA-ND-A4WA TCGA-ND-A4WF 
       52.27         4.64        24.00        27.39        23.47         5.49 
TCGA-QM-A5NM 
        5.42 

$`7Q GAIN WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       47.31        18.08         4.87        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       50.17        59.70        14.70        11.87        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       16.34        13.94        14.40         7.20         4.77         9.70 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
       74.33         3.72         6.64        85.35        10.42        15.16 
TCGA-NG-A4VW 
       31.17 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             4.64              3.72 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            52.27             85.35 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            23.47             15.16 
[1] "4.6 - 52.3 (23.5)" "3.7 - 85.3 (15.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
[1] "hr=" "1.5"
D13V2, continuous

Clustering(14) Variable = 8P GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    4  6
  8P GAIN WILD-TYPE  9 13
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                22 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                6                13 
$`8P GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PQ 
        4.64        47.31         4.87        26.63        16.34         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47        31.17         5.42 

$`8P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.27        18.08        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN 
       50.17        59.70        14.70        11.87        13.71        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       14.40         7.20         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF 
        6.64        85.35        15.16         5.49 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             4.64              3.72 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            47.31             85.35 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            13.38             16.62 
[1] "4.6 - 47.3 (13.4)" "3.7 - 85.3 (16.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
[1] "hr=" "1.6"
D14V2, continuous

Clustering(15) Variable = 8Q GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED    8  7
  8Q GAIN WILD-TYPE  5 12
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                17 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                7                12 
$`8Q GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N8-A4PI TCGA-N8-A4PM 
        4.64        47.31         4.87        24.00        26.63        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 
       14.40         7.20         4.77         3.72        85.35        10.42 
TCGA-ND-A4WA TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        31.17         5.42 

$`8Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
       52.27        18.08        22.52        29.95        69.63        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A56S 
       59.70        14.70        11.87        13.71        13.94         9.70 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF 
       74.33        27.39         6.64        15.16         5.49 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             3.72              5.49 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            85.35             74.33 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            14.40             18.08 
[1] "3.7 - 85.3 (14.4)" "5.5 - 74.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
[1] "hr=" "1"  
D15V2, continuous

Clustering(16) Variable = 9P GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  9P GAIN MUTATED    2  2
  9P GAIN WILD-TYPE 11 17
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4                28 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                2                17 
$`9P GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N8-A4PL TCGA-N8-A4PP 
       47.31        50.17        13.71         7.20 

$`9P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        59.70        14.70        11.87        26.63 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       16.34        13.94        14.40         4.77         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             7.20              3.72 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            50.17             85.35 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            30.51             15.75 
[1] "7.2 - 50.2 (30.5)" "3.7 - 85.3 (15.8)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D16V2, continuous

Clustering(17) Variable = 10P GAIN MUTATION ANALYSIS
D17V1, survival
                    sevent
clus2                 0  1
  10P GAIN MUTATED    3  7
  10P GAIN WILD-TYPE 10 12
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                10                 22 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 7                 12 
$`10P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       18.08        11.87        13.71        13.94         7.20         4.77 
TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
       27.39        10.42        23.47        31.17 

$`10P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI 
       29.95        69.63        50.17        59.70        14.70        26.63 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 
       16.34        14.40         9.70        74.33         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        15.16         5.49         5.42 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              4.77               3.72 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             31.17              85.35 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            13.825             19.430 
[1] "4.8 - 31.2 (13.8)" "3.7 - 85.3 (19.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D17V2, continuous

Clustering(18) Variable = 10Q GAIN MUTATION ANALYSIS
D18V1, survival
                    sevent
clus2                 0  1
  10Q GAIN MUTATED    5  4
  10Q GAIN WILD-TYPE  8 15
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 9                 23 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 15 
$`10Q GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PQ 
       24.00        59.70        11.87        13.71        13.94         4.77 
TCGA-NA-A4QW TCGA-ND-A4WA TCGA-NG-A4VW 
       74.33        23.47        31.17 

$`10Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM 
       29.95        69.63        50.17        14.70        26.63        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       14.40         7.20         9.70        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        15.16         5.49         5.42 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              4.77               3.72 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             74.33              85.35 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             23.47              15.16 
[1] "4.8 - 74.3 (23.5)" "3.7 - 85.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D18V2, continuous

Clustering(19) Variable = 11P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    3  0
  11P GAIN WILD-TYPE 10 19
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 29 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 0                 19 
$`11P GAIN MUTATED`
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW 
       14.40         7.20        74.33 

$`11P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       11.87        26.63        13.71        16.34        13.94         4.77 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
        9.70        27.39         3.72         6.64        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         5.49        31.17         5.42 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              7.20               3.72 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             74.33              85.35 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             14.40              16.34 
[1] "7.2 - 74.3 (14.4)" "3.7 - 85.3 (16.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr="   "8e+07"
D19V2, continuous

Clustering(20) Variable = 11Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    3  1
  11Q GAIN WILD-TYPE 10 18
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 28 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 1                 18 
$`11Q GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       13.94         7.20         9.70        74.33 

$`11Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ 
       11.87        26.63        13.71        16.34        14.40         4.77 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              7.20               3.72 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             74.33              85.35 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             11.82              17.21 
[1] "7.2 - 74.3 (11.8)" "3.7 - 85.3 (17.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D20V2, continuous

Clustering(21) Variable = 12P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED    2  9
  12P GAIN WILD-TYPE 11 10
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                 21 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 9                 10 
$`12P GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E 
        4.64         4.87        22.52        29.95        69.63        14.70 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WF 
       13.71        16.34         9.70        10.42         5.49 

$`12P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27        47.31        18.08        24.00        50.17        59.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       11.87        26.63        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA 
       74.33        27.39         3.72         6.64        85.35        23.47 
TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16        31.17         5.42 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              4.64               3.72 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             69.63              85.35 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             13.71              23.47 
[1] "4.6 - 69.6 (13.7)" "3.7 - 85.3 (23.5)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D21V2, continuous

Clustering(22) Variable = 12Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    2  3
  12Q GAIN WILD-TYPE 11 16
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 27 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 3                 16 
$`12Q GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A56S 
        4.64         4.87        69.63        16.34         9.70 

$`12Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27        47.31        18.08        24.00        22.52        29.95 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       50.17        59.70        14.70        11.87        26.63        13.71 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX 
       13.94        14.40         7.20         4.77        74.33        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        3.72         6.64        85.35        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              4.64               3.72 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             69.63              85.35 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              9.70              18.08 
[1] "4.6 - 69.6 (9.7)"  "3.7 - 85.3 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous

Clustering(23) Variable = 13Q GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  13Q GAIN MUTATED    3  6
  13Q GAIN WILD-TYPE 10 13
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                 23 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 13 
$`13Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-NA-A4QW 
       47.31        14.70        11.87        13.71        13.94        74.33 
TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.72        10.42        23.47 

$`13Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM 
       29.95        69.63        50.17        59.70        26.63        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4R1 
       14.40         7.20         4.77         9.70        27.39         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        15.16         5.49        31.17         5.42 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              3.72               4.64 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             74.33              85.35 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             13.94              18.08 
[1] "3.7 - 74.3 (13.9)" "4.6 - 85.3 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D23V2, continuous

Clustering(24) Variable = 16P GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    2  5
  16P GAIN WILD-TYPE 11 14
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                 25 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                 14 
$`16P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QX 
       18.08         4.87        13.94        14.40         9.70        27.39 
TCGA-NA-A4QY 
        3.72 

$`16P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       69.63        50.17        59.70        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4R1 
       13.71        16.34         7.20         4.77        74.33         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       85.35        10.42        23.47        15.16         5.49        31.17 
TCGA-QM-A5NM 
        5.42 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              3.72               4.64 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             27.39              85.35 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             13.94              22.52 
[1] "3.7 - 27.4 (13.9)" "4.6 - 85.3 (22.5)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "2.8"
D24V2, continuous

Clustering(25) Variable = 16Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    1  3
  16Q GAIN WILD-TYPE 12 16
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 28 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 3                 16 
$`16Q GAIN MUTATED`
TCGA-N5-A4RM TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QX 
        4.87        14.40         9.70        27.39 

$`16Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              4.87               3.72 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             27.39              85.35 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             12.05              17.21 
[1] "4.9 - 27.4 (12.1)" "3.7 - 85.3 (17.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D25V2, continuous

Clustering(26) Variable = 17P GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  17P GAIN MUTATED    3  2
  17P GAIN WILD-TYPE 10 17
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 27 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 2                 17 
$`17P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PN TCGA-NA-A4QW TCGA-ND-A4W6 
       59.70        13.71        13.94        74.33        10.42 

$`17P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       26.63        16.34        14.40         7.20         4.77         9.70 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC 
       27.39         3.72         6.64        85.35        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             10.42               3.72 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             74.33              85.35 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             13.94              16.34 
[1] "10.4 - 74.3 (13.9)" "3.7 - 85.3 (16.3)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D26V2, continuous

Clustering(27) Variable = 17Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED    4  6
  17Q GAIN WILD-TYPE  9 13
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 22 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 6                 13 
$`17Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       18.08        50.17        59.70        13.71        16.34        13.94 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33         3.72        10.42        23.47 

$`17Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PO 
       29.95        69.63        14.70        11.87        26.63        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 
        7.20         4.77         9.70        27.39         6.64        85.35 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              3.72               4.64 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             74.33              85.35 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             17.21              14.93 
[1] "3.7 - 74.3 (17.2)" "4.6 - 85.3 (14.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous

Clustering(28) Variable = 18P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED    5  4
  18P GAIN WILD-TYPE  8 15
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 9                 23 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                 15 
$`18P GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       24.00        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-ND-A4WF 
       16.34        14.40         5.49 

$`18P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       29.95        26.63        13.71        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47        15.16        31.17         5.42 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              5.49               3.72 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             69.63              85.35 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             16.34              15.16 
[1] "5.5 - 69.6 (16.3)" "3.7 - 85.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D28V2, continuous

Clustering(29) Variable = 18Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  18Q GAIN MUTATED    3  5
  18Q GAIN WILD-TYPE 10 14
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                 24 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 14 
$`18Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM 
       47.31         4.87        50.17        14.70        11.87        16.34 
TCGA-N8-A4PO TCGA-ND-A4WF 
       14.40         5.49 

$`18Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        18.08        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       69.63        59.70        26.63        13.71        13.94         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
        4.77         9.70        74.33        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        10.42        23.47        15.16        31.17         5.42 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              4.87               3.72 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             50.17              85.35 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             14.55              20.30 
[1] "4.9 - 50.2 (14.6)" "3.7 - 85.3 (20.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous

Clustering(30) Variable = 19P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED    8  4
  19P GAIN WILD-TYPE  5 15
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                 20 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                 15 
$`19P GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       24.00        59.70        16.34        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-QM-A5NM 
       74.33        27.39         3.72        10.42        23.47         5.42 

$`19P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A56S TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC 
       13.71        13.94         9.70         6.64        85.35        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW 
        5.49        31.17 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              3.72               4.64 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             74.33              85.35 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             15.37              16.62 
[1] "3.7 - 74.3 (15.4)" "4.6 - 85.3 (16.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
[1] "hr=" "1.9"
D30V2, continuous

Clustering(31) Variable = 19Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED    9  7
  19Q GAIN WILD-TYPE  4 12
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                16                 16 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 7                 12 
$`19Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM 
       18.08        24.00        59.70        14.70        13.71        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       14.40         7.20         4.77        74.33        27.39         3.72 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-QM-A5NM 
       85.35        10.42        23.47         5.42 

$`19Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31         4.87        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A56S 
       69.63        50.17        11.87        26.63        13.94         9.70 
TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
        6.64        15.16         5.49        31.17 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              3.72               4.64 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             85.35              69.63 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             15.52              18.84 
[1] "3.7 - 85.3 (15.5)" "4.6 - 69.6 (18.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
[1] "hr=" "1.5"
D31V2, continuous

Clustering(32) Variable = 20P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED    9 14
  20P GAIN WILD-TYPE  4  5
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                23                  9 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                14                  5 
$`20P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS 
       52.27         4.64        47.31         4.87        24.00        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       69.63        50.17        59.70        14.70        11.87        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       16.34        13.94        14.40        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        23.47         5.49         5.42 

$`20P GAIN WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N8-A4PI TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       18.08        22.52        26.63         7.20         4.77         9.70 
TCGA-NA-A4QW TCGA-ND-A4WC TCGA-NG-A4VW 
       74.33        15.16        31.17 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              3.72               4.77 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             85.35              74.33 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             14.70              18.08 
[1] "3.7 - 85.3 (14.7)" "4.8 - 74.3 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1"  
D32V2, continuous

Clustering(33) Variable = 20Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   10 16
  20Q GAIN WILD-TYPE  3  3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                26                  6 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                16                  3 
$`20Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94        14.40         4.77 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`20Q GAIN WILD-TYPE`
TCGA-N5-A4RO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-ND-A4WC TCGA-NG-A4VW 
       22.52         7.20         9.70        74.33        15.16        31.17 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              3.72               7.20 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             85.35              74.33 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             15.52              18.84 
[1] "3.7 - 85.3 (15.5)" "7.2 - 74.3 (18.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr=" "1.3"
D33V2, continuous

Clustering(34) Variable = 21Q GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED    5  5
  21Q GAIN WILD-TYPE  8 14
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                 22 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 5                 14 
$`21Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PN 
       18.08         4.87        69.63        59.70        11.87        13.94 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WF 
       14.40         4.77        10.42         5.49 

$`21Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31        24.00        22.52        29.95 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP 
       50.17        14.70        26.63        13.71        16.34         7.20 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16        31.17         5.42 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              4.77               3.72 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             69.63              85.35 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            12.905             22.995 
[1] "4.8 - 69.6 (12.9)" "3.7 - 85.3 (23.0)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous

Clustering(35) Variable = 22Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    2  2
  22Q GAIN WILD-TYPE 11 17
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 28 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 17 
$`22Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N5-A59E TCGA-NA-A4QW 
       47.31        50.17        14.70        74.33 

$`22Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       29.95        69.63        59.70        11.87        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       16.34        13.94        14.40         7.20         4.77         9.70 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             14.70               3.72 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             74.33              85.35 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             48.74              14.78 
[1] "14.7 - 74.3 (48.7)" "3.7 - 85.3 (14.8)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D35V2, continuous

Clustering(36) Variable = XQ GAIN MUTATION ANALYSIS
D36V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED    3  6
  XQ GAIN WILD-TYPE 10 13
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9                23 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                6                13 
$`XQ GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PO 
        4.64        69.63        50.17        11.87        26.63        14.40 
TCGA-NA-A4QW TCGA-ND-A4WA TCGA-NG-A4VW 
       74.33        23.47        31.17 

$`XQ GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       29.95        59.70        14.70        13.71        16.34        13.94 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
        7.20         4.77         9.70        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        15.16         5.49         5.42 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             4.64              3.72 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            74.33             85.35 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            26.63             14.70 
[1] "4.6 - 74.3 (26.6)" "3.7 - 85.3 (14.7)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D36V2, continuous

Clustering(37) Variable = 1P LOSS MUTATION ANALYSIS
D37V1, survival
                   sevent
clus2                0  1
  1P LOSS MUTATED    2  3
  1P LOSS WILD-TYPE 11 16
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                27 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                3                16 
$`1P LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A59E TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A5I1 
        4.64        14.70         4.77         9.70        85.35 

$`1P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        59.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW 
       13.71        16.34        13.94        14.40         7.20        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       27.39         3.72         6.64        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             4.64              3.72 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            85.35             74.33 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             9.70             18.08 
[1] "4.6 - 85.3 (9.7)"  "3.7 - 74.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D37V2, continuous

Clustering(38) Variable = 1Q LOSS MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2                0  1
  1Q LOSS MUTATED    2  3
  1Q LOSS WILD-TYPE 11 16
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                5                27 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                3                16 
$`1Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A59E TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A5I1 
        4.64        14.70         4.77         9.70        85.35 

$`1Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        59.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW 
       13.71        16.34        13.94        14.40         7.20        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       27.39         3.72         6.64        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             4.64              3.72 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            85.35             74.33 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             9.70             18.08 
[1] "4.6 - 85.3 (9.7)"  "3.7 - 74.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D38V2, continuous

Clustering(39) Variable = 3P LOSS MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    4  7
  3P LOSS WILD-TYPE  9 12
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                21 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                12 
$`3P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       52.27         4.64        47.31        11.87        26.63        13.71 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QY TCGA-QM-A5NM 
       14.40         7.20         9.70         3.72         5.42 

$`3P LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       18.08         4.87        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       50.17        59.70        14.70        16.34        13.94         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33        27.39         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       15.16         5.49        31.17 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             3.72              4.77 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            52.27             85.35 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            11.87             22.52 
[1] "3.7 - 52.3 (11.9)" "4.8 - 85.3 (22.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
[1] "hr=" "1.8"
D39V2, continuous

Clustering(40) Variable = 3Q LOSS MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                0  1
  3Q LOSS MUTATED    2  7
  3Q LOSS WILD-TYPE 11 12
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9                23 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                7                12 
$`3Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       52.27         4.64        47.31        11.87        26.63        13.71 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QY 
       14.40         9.70         3.72 

$`3Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       18.08         4.87        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       50.17        59.70        14.70        16.34        13.94         7.20 
TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
        4.77        74.33        27.39         6.64        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         5.49        31.17         5.42 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             3.72              4.77 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            52.27             85.35 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            13.71             18.08 
[1] "3.7 - 52.3 (13.7)" "4.8 - 85.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D40V2, continuous

Clustering(41) Variable = 4P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED    6 14
  4P LOSS WILD-TYPE  7  5
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               20                12 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               14                 5 
$`4P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PQ 
       50.17        14.70        11.87        13.71        14.40         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA 
        9.70        74.33        27.39         6.64        85.35        23.47 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`4P LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM 
       24.00        29.95        69.63        59.70        26.63        16.34 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW 
       13.94         7.20         3.72        10.42        15.16        31.17 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             4.64              3.72 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            85.35             69.63 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.55             20.17 
[1] "4.6 - 85.3 (14.6)" "3.7 - 69.6 (20.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
[1] "hr=" "1.9"
D41V2, continuous

Clustering(42) Variable = 4Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED    7 15
  4Q LOSS WILD-TYPE  6  4
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               22                10 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               15                 4 
$`4Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP 
       50.17        14.70        11.87        13.71        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 
        4.77         9.70        74.33        27.39         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       10.42        23.47         5.49         5.42 

$`4Q LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM 
       24.00        29.95        69.63        59.70        26.63        16.34 
TCGA-N8-A4PN TCGA-NA-A4QY TCGA-ND-A4WC TCGA-NG-A4VW 
       13.94         3.72        15.16        31.17 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             4.64              3.72 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            85.35             69.63 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           14.055            25.315 
[1] "4.6 - 85.3 (14.1)" "3.7 - 69.6 (25.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
[1] "hr=" "2.4"
D42V2, continuous

Clustering(43) Variable = 5P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  5P LOSS MUTATED    2  4
  5P LOSS WILD-TYPE 11 15
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                6                26 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                4                15 
$`5P LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N8-A4PM TCGA-NA-A4R1 TCGA-ND-A4WA 
        4.64         4.87        24.00        16.34         6.64        23.47 

$`5P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.27        47.31        18.08        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       50.17        59.70        14.70        11.87        26.63        13.71 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       13.94        14.40         7.20         4.77         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
       27.39         3.72        85.35        10.42        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             4.64              3.72 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            24.00             85.35 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            11.49             16.62 
[1] "4.6 - 24.0 (11.5)" "3.7 - 85.3 (16.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "2.5"
D43V2, continuous

Clustering(44) Variable = 5Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED    5  4
  5Q LOSS WILD-TYPE  8 15
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                9                23 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                4                15 
$`5Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A4PO 
        4.64         4.87        24.00        69.63        16.34        14.40 
TCGA-N8-A4PP TCGA-NA-A4R1 TCGA-ND-A4WA 
        7.20         6.64        23.47 

$`5Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
       52.27        47.31        18.08        22.52        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN 
       59.70        14.70        11.87        26.63        13.71        13.94 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 
        4.77         9.70        74.33        27.39         3.72        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        15.16         5.49        31.17         5.42 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             4.64              3.72 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            69.63             85.35 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            14.40             18.08 
[1] "4.6 - 69.6 (14.4)" "3.7 - 85.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous

Clustering(45) Variable = 6P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED    2  1
  6P LOSS WILD-TYPE 11 18
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                3                29 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                1                18 
$`6P LOSS MUTATED`
TCGA-N5-A59F TCGA-N8-A4PQ TCGA-QM-A5NM 
       11.87         4.77         5.42 

$`6P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       26.63        13.71        16.34        13.94        14.40         7.20 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       10.42        23.47        15.16         5.49        31.17 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             4.77              3.72 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            11.87             85.35 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             5.42             18.08 
[1] "4.8 - 11.9 (5.4)"  "3.7 - 85.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
[1] "hr=" "2.3"
D45V2, continuous

Clustering(46) Variable = 6Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED    2  2
  6Q LOSS WILD-TYPE 11 17
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                4                28 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                2                17 
$`6Q LOSS MUTATED`
TCGA-N5-A59F TCGA-N8-A4PQ TCGA-NA-A4QY TCGA-QM-A5NM 
       11.87         4.77         3.72         5.42 

$`6Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       26.63        13.71        16.34        13.94        14.40         7.20 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
        9.70        74.33        27.39         6.64        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       23.47        15.16         5.49        31.17 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             3.72              4.64 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            11.87             85.35 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            5.095            20.300 
[1] "3.7 - 11.9 (5.1)"  "4.6 - 85.3 (20.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
[1] "hr=" "5.3"
D46V2, continuous

Clustering(47) Variable = 7P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  7P LOSS MUTATED    4  2
  7P LOSS WILD-TYPE  9 17
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6                26 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2                17 
$`7P LOSS MUTATED`
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW 
       14.70        11.87        16.34        14.40         4.77        74.33 

$`7P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI 
       22.52        29.95        69.63        50.17        59.70        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY 
       13.71        13.94         7.20         9.70        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.64        85.35        10.42        23.47        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             4.77              3.72 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            74.33             85.35 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            14.55             20.30 
[1] "4.8 - 74.3 (14.6)" "3.7 - 85.3 (20.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D47V2, continuous

Clustering(48) Variable = 7Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  7Q LOSS MUTATED    3  4
  7Q LOSS WILD-TYPE 10 15
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                7                25 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                15 
$`7Q LOSS MUTATED`
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ 
       50.17        14.70        11.87        16.34        14.40         4.77 
TCGA-ND-A4W6 
       10.42 

$`7Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL 
       22.52        29.95        69.63        59.70        26.63        13.71 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       13.94         7.20         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
        6.64        85.35        23.47        15.16         5.49        31.17 
TCGA-QM-A5NM 
        5.42 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             4.77              3.72 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            50.17             85.35 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            14.40             22.52 
[1] "4.8 - 50.2 (14.4)" "3.7 - 85.3 (22.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D48V2, continuous

Clustering(49) Variable = 8P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED    5  7
  8P LOSS WILD-TYPE  8 12
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12                20 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                7                12 
$`8P LOSS MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PN 
       24.00        22.52        50.17        14.70        11.87        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 
       14.40         7.20         9.70        27.39         3.72        85.35 

$`8P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.27         4.64        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PQ 
       69.63        59.70        26.63        13.71        16.34         4.77 
TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       74.33         6.64        10.42        23.47        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             3.72              4.64 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            85.35             74.33 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            14.55             17.21 
[1] "3.7 - 85.3 (14.6)" "4.6 - 74.3 (17.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous

Clustering(50) Variable = 8Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  8Q LOSS MUTATED    0  5
  8Q LOSS WILD-TYPE 13 14
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                27 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                14 
$`8Q LOSS MUTATED`
TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A56S TCGA-NA-A4QX 
       22.52        50.17        11.87         9.70        27.39 

$`8Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PL 
       29.95        69.63        59.70        14.70        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW 
       16.34        13.94        14.40         7.20         4.77        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        3.72         6.64        85.35        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             9.70              3.72 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            50.17             85.35 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            22.52             15.16 
[1] "9.7 - 50.2 (22.5)" "3.7 - 85.3 (15.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D50V2, continuous

Clustering(51) Variable = 9P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED    7  9
  9P LOSS WILD-TYPE  6 10
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               16                16 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                9                10 
$`9P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM 
       52.27        18.08        59.70        14.70        11.87        16.34 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX 
       13.94        14.40         4.77         9.70        74.33        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-QM-A5NM 
        3.72         6.64        23.47         5.42 

$`9P LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
        4.64        47.31         4.87        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-NA-A5I1 
       69.63        50.17        26.63        13.71         7.20        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       10.42        15.16         5.49        31.17 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             3.72              4.64 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            74.33             85.35 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            14.55             23.26 
[1] "3.7 - 74.3 (14.6)" "4.6 - 85.3 (23.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
[1] "hr=" "1.1"
D51V2, continuous

Clustering(52) Variable = 9Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED    9 10
  9Q LOSS WILD-TYPE  4  9
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               19                13 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               10                 9 
$`9Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59E 
       52.27        47.31        18.08        24.00        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S 
       11.87        16.34        13.94        14.40         4.77         9.70 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33        27.39         3.72         6.64        10.42        23.47 
TCGA-QM-A5NM 
        5.42 

$`9Q LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
        4.64         4.87        22.52        29.95        69.63        50.17 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF 
       26.63        13.71         7.20        85.35        15.16         5.49 
TCGA-NG-A4VW 
       31.17 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             3.72              4.64 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            74.33             85.35 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            14.70             22.52 
[1] "3.7 - 74.3 (14.7)" "4.6 - 85.3 (22.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous

Clustering(53) Variable = 10P LOSS MUTATION ANALYSIS
D53V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED    7  7
  10P LOSS WILD-TYPE  6 12
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                14                 18 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 7                 12 
$`10P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU 
       52.27         4.64         4.87        24.00        22.52        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PM TCGA-N8-A4PO TCGA-NA-A4QW TCGA-NA-A4R1 
       59.70        14.70        16.34        14.40        74.33         6.64 
TCGA-NA-A5I1 TCGA-QM-A5NM 
       85.35         5.42 

$`10P LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59F TCGA-N8-A4PI 
       47.31        18.08        29.95        69.63        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX 
       13.71        13.94         7.20         4.77         9.70        27.39 
TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
        3.72        10.42        23.47        15.16         5.49        31.17 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              4.64               3.72 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             85.35              69.63 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             19.43              14.55 
[1] "4.6 - 85.3 (19.4)" "3.7 - 69.6 (14.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
[1] "hr=" "1.8"
D53V2, continuous

Clustering(54) Variable = 10Q LOSS MUTATION ANALYSIS
D54V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED    4  7
  10Q LOSS WILD-TYPE  9 12
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                11                 21 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 7                 12 
$`10Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N8-A4PM 
       52.27         4.64        18.08         4.87        22.52        16.34 
TCGA-N8-A4PO TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-QM-A5NM 
       14.40        27.39         6.64        85.35         5.42 

$`10Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       47.31        24.00        29.95        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       14.70        11.87        26.63        13.71        13.94         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
        4.77         9.70        74.33         3.72        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       15.16         5.49        31.17 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              4.64               3.72 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             85.35              74.33 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             16.34              15.16 
[1] "4.6 - 85.3 (16.3)" "3.7 - 74.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
[1] "hr=" "1.3"
D54V2, continuous

Clustering(55) Variable = 11P LOSS MUTATION ANALYSIS
D55V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED    2 14
  11P LOSS WILD-TYPE 11  5
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                16                 16 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                14                  5 
$`11P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59E 
       52.27         4.64         4.87        22.52        50.17        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-NA-A4R1 
       11.87        26.63        13.71        16.34         9.70         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       85.35        10.42        23.47         5.49 

$`11P LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV 
       47.31        18.08        24.00        29.95        69.63        59.70 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX 
       13.94        14.40         7.20         4.77        74.33        27.39 
TCGA-NA-A4QY TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72        15.16        31.17         5.42 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              4.64               3.72 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             85.35              74.33 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            14.205             21.040 
[1] "4.6 - 85.3 (14.2)" "3.7 - 74.3 (21.0)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "3.7"
D55V2, continuous

Clustering(56) Variable = 11Q LOSS MUTATION ANALYSIS
D56V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED    4 11
  11Q LOSS WILD-TYPE  9  8
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                15                 17 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                11                  8 
$`11Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RU 
       52.27         4.64        47.31         4.87        22.52        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO TCGA-NA-A5I1 
       59.70        14.70        11.87        13.71        14.40        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       10.42        23.47         5.49 

$`11Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM 
       18.08        24.00        29.95        69.63        26.63        16.34 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX 
       13.94         7.20         4.77         9.70        74.33        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72         6.64        15.16        31.17         5.42 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              4.64               3.72 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             85.35              74.33 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             14.70              16.34 
[1] "4.6 - 85.3 (14.7)" "3.7 - 74.3 (16.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D56V2, continuous

Clustering(57) Variable = 12P LOSS MUTATION ANALYSIS
D57V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED    5  5
  12P LOSS WILD-TYPE  8 14
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                10                 22 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                 14 
$`12P LOSS MUTATED`
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       11.87        26.63        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       74.33        27.39         3.72         6.64 

$`12P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71        16.34         9.70        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              3.72               4.64 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             74.33              85.35 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            12.905             20.300 
[1] "3.7 - 74.3 (12.9)" "4.6 - 85.3 (20.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous

Clustering(58) Variable = 12Q LOSS MUTATION ANALYSIS
D58V1, survival
                    sevent
clus2                 0  1
  12Q LOSS MUTATED    3  6
  12Q LOSS WILD-TYPE 10 13
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 9                 23 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 6                 13 
$`12Q LOSS MUTATED`
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW 
       14.70        11.87        26.63        14.40         7.20        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       27.39         3.72         6.64 

$`12Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PL 
       22.52        29.95        69.63        50.17        59.70        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A5I1 TCGA-ND-A4W6 
       16.34        13.94         4.77         9.70        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         5.49        31.17         5.42 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              3.72               4.64 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             74.33              85.35 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             14.40              18.08 
[1] "3.7 - 74.3 (14.4)" "4.6 - 85.3 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D58V2, continuous

Clustering(59) Variable = 13Q LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED    6  8
  13Q LOSS WILD-TYPE  7 11
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                14                 18 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 8                 11 
$`13Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU 
        4.64         4.87        24.00        22.52        69.63        50.17 
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX 
       59.70        26.63        14.40         7.20         9.70        27.39 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`13Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A59E TCGA-N5-A59F 
       52.27        47.31        18.08        29.95        14.70        11.87 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY 
       13.71        16.34        13.94         4.77        74.33         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        85.35        10.42        23.47        15.16        31.17 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              4.64               3.72 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             69.63              85.35 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             18.46              15.75 
[1] "4.6 - 69.6 (18.5)" "3.7 - 85.3 (15.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
[1] "hr=" "1"  
D59V2, continuous

Clustering(60) Variable = 14Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED    5 13
  14Q LOSS WILD-TYPE  8  6
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 14 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                  6 
$`14Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        18.08         4.87        22.52        69.63 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP 
       14.70        11.87        26.63        13.71        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        4.77         9.70        27.39        85.35        10.42        23.47 

$`14Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PM 
       47.31        24.00        29.95        50.17        59.70        16.34 
TCGA-N8-A4PN TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF 
       13.94        74.33         3.72         6.64        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              4.64               3.72 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             85.35              74.33 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             14.55              20.17 
[1] "4.6 - 85.3 (14.6)" "3.7 - 74.3 (20.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D60V2, continuous

Clustering(61) Variable = 15Q LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED    9  9
  15Q LOSS WILD-TYPE  4 10
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                18                 14 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 9                 10 
$`15Q LOSS MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N8-A4PI 
       47.31         4.87        22.52        69.63        50.17        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW 
       13.71        16.34        14.40         7.20         4.77        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       27.39         3.72        85.35        23.47         5.49         5.42 

$`15Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RV 
       52.27         4.64        18.08        24.00        29.95        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PN TCGA-N8-A56S TCGA-NA-A4R1 TCGA-ND-A4W6 
       14.70        11.87        13.94         9.70         6.64        10.42 
TCGA-ND-A4WC TCGA-NG-A4VW 
       15.16        31.17 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              3.72               4.64 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             85.35              59.70 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             19.43              14.93 
[1] "3.7 - 85.3 (19.4)" "4.6 - 59.7 (14.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
[1] "hr=" "1.5"
D61V2, continuous

Clustering(62) Variable = 16P LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED    8 10
  16P LOSS WILD-TYPE  5  9
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                18                 14 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                10                  9 
$`16P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        47.31        24.00        22.52        69.63 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       50.17        14.70        11.87        26.63        13.71        16.34 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WF 
        7.20         4.77        74.33         6.64        85.35         5.49 

$`16P LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO 
       18.08         4.87        29.95        59.70        13.94        14.40 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        9.70        27.39         3.72        10.42        23.47        15.16 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              4.64               3.72 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             85.35              59.70 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             19.43              14.78 
[1] "4.6 - 85.3 (19.4)" "3.7 - 59.7 (14.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous

Clustering(63) Variable = 16Q LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED    9 13
  16Q LOSS WILD-TYPE  4  6
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                22                 10 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                13                  6 
$`16Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       69.63        50.17        14.70        11.87        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY 
       16.34        13.94         7.20         4.77        74.33         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WF 
        6.64        85.35        10.42         5.49 

$`16Q LOSS WILD-TYPE`
TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QX 
        4.87        29.95        59.70        14.40         9.70        27.39 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16        31.17         5.42 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              3.72               4.87 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             85.35              59.70 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            15.520             19.315 
[1] "3.7 - 85.3 (15.5)" "4.9 - 59.7 (19.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D63V2, continuous

Clustering(64) Variable = 17P LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED    6 13
  17P LOSS WILD-TYPE  7  6
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                19                 13 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                13                  6 
$`17P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM 
       22.52        69.63        50.17        14.70        11.87        16.34 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4WA TCGA-ND-A4WF 
       14.40         9.70        27.39         3.72        23.47         5.49 
TCGA-QM-A5NM 
        5.42 

$`17P LOSS WILD-TYPE`
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       29.95        59.70        26.63        13.71        13.94         7.20 
TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
        4.77        74.33         6.64        85.35        10.42        15.16 
TCGA-NG-A4VW 
       31.17 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              3.72               4.77 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             69.63              85.35 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             16.34              15.16 
[1] "3.7 - 69.6 (16.3)" "4.8 - 85.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
[1] "hr=" "1.9"
D64V2, continuous

Clustering(65) Variable = 17Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    2  7
  17Q LOSS WILD-TYPE 11 12
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 23 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                 12 
$`17Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A59E TCGA-N5-A59F 
       52.27         4.64         4.87        22.52        14.70        11.87 
TCGA-N8-A4PO TCGA-NA-A4QX TCGA-QM-A5NM 
       14.40        27.39         5.42 

$`17Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
       47.31        18.08        24.00        29.95        69.63        50.17 
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       59.70        26.63        13.71        16.34        13.94         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        4.77         9.70        74.33         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       10.42        23.47        15.16         5.49        31.17 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              4.64               3.72 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             52.27              85.35 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             14.40              18.08 
[1] "4.6 - 52.3 (14.4)" "3.7 - 85.3 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
[1] "hr=" "2.2"
D65V2, continuous

Clustering(66) Variable = 18P LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED    3  5
  18P LOSS WILD-TYPE 10 14
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 24 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 5                 14 
$`18P LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A5I1 
       18.08         4.87        13.94         4.77        27.39        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA 
       10.42        23.47 

$`18P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       69.63        50.17        59.70        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       13.71        16.34        14.40         7.20         9.70        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72         6.64        15.16         5.49        31.17         5.42 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              4.77               3.72 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             85.35              74.33 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             16.01              15.75 
[1] "4.8 - 85.3 (16.0)" "3.7 - 74.3 (15.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D66V2, continuous

Clustering(67) Variable = 18Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED    3  5
  18Q LOSS WILD-TYPE 10 14
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 24 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 5                 14 
$`18Q LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N8-A4PN TCGA-NA-A4QX TCGA-NA-A5I1 
       18.08        24.00        22.52        13.94        27.39        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA 
       10.42        23.47 

$`18Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT 
       52.27         4.64        47.31         4.87        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL 
       50.17        59.70        14.70        11.87        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       16.34        14.40         7.20         4.77         9.70        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72         6.64        15.16         5.49        31.17         5.42 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             10.42               3.72 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             85.35              74.33 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            22.995             14.550 
[1] "10.4 - 85.3 (23.0)" "3.7 - 74.3 (14.6)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D67V2, continuous

Clustering(68) Variable = 19P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    3  8
  19P LOSS WILD-TYPE 10 11
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                11                 21 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 8                 11 
$`19P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.27         4.64        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A56S TCGA-NA-A4R1 TCGA-NA-A5I1 
       69.63        13.71         9.70         6.64        85.35 

$`19P LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       24.00        22.52        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        16.34        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       74.33        27.39         3.72        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              4.64               3.72 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             85.35              74.33 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             18.08              15.16 
[1] "4.6 - 85.3 (18.1)" "3.7 - 74.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D68V2, continuous

Clustering(69) Variable = 19Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED    2  7
  19Q LOSS WILD-TYPE 11 12
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 9                 23 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 7                 12 
$`19Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT 
       52.27         4.64        47.31         4.87        29.95        69.63 
TCGA-N8-A56S TCGA-NA-A4R1 TCGA-ND-A4WF 
        9.70         6.64         5.49 

$`19Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       18.08        24.00        22.52        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       11.87        26.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 
        7.20         4.77        74.33        27.39         3.72        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47        15.16        31.17         5.42 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              4.64               3.72 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             69.63              85.35 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              9.70              16.34 
[1] "4.6 - 69.6 (9.7)"  "3.7 - 85.3 (16.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D69V2, continuous

Clustering(70) Variable = 20P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    2  2
  20P LOSS WILD-TYPE 11 17
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 28 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 17 
$`20P LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       18.08         7.20         9.70        74.33 

$`20P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94        14.40         4.77 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              7.20               3.72 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             74.33              85.35 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             13.89              15.75 
[1] "7.2 - 74.3 (13.9)" "3.7 - 85.3 (15.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D70V2, continuous

Clustering(71) Variable = 20Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                 0  1
  20Q LOSS MUTATED    2  1
  20Q LOSS WILD-TYPE 11 18
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 29 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 18 
$`20Q LOSS MUTATED`
TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
        7.20         9.70        74.33 

$`20Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       11.87        26.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
        4.77        27.39         3.72         6.64        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         5.49        31.17         5.42 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              7.20               3.72 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             74.33              85.35 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              9.70              16.34 
[1] "7.2 - 74.3 (9.7)"  "3.7 - 85.3 (16.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D71V2, continuous

Clustering(72) Variable = 21Q LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED    2  6
  21Q LOSS WILD-TYPE 11 13
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 8                 24 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 6                 13 
$`21Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP 
       52.27        50.17        14.70        13.71        16.34         7.20 
TCGA-N8-A56S TCGA-ND-A4WA 
        9.70        23.47 

$`21Q LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.64        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN 
       29.95        69.63        59.70        11.87        26.63        13.94 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       14.40         4.77        74.33        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        10.42        15.16         5.49        31.17         5.42 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              7.20               3.72 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             52.27              85.35 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             15.52              16.62 
[1] "7.2 - 52.3 (15.5)" "3.7 - 85.3 (16.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous

Clustering(73) Variable = 22Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED    7 14
  22Q LOSS WILD-TYPE  6  5
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 11 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                14                  5 
$`22Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       29.95        59.70        11.87        26.63        13.71        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       14.40         7.20         9.70        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-QM-A5NM 
       85.35        23.47         5.42 

$`22Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PN TCGA-N8-A4PQ 
       47.31        69.63        50.17        14.70        13.94         4.77 
TCGA-NA-A4QW TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       74.33        10.42        15.16         5.49        31.17 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              3.72               4.77 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             85.35              74.33 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             16.34              15.16 
[1] "3.7 - 85.3 (16.3)" "4.8 - 74.3 (15.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N8-A4PI         TCGA-N8-A4PL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PM         TCGA-N8-A4PN         TCGA-N8-A4PO 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PP         TCGA-N8-A4PQ         TCGA-N8-A56S 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NA-A4QW         TCGA-NA-A4QX         TCGA-NA-A4QY 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NG-A4VW         TCGA-QM-A5NM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
[1] "hr=" "2"  
D73V2, continuous

Clustering(74) Variable = XQ LOSS MUTATION ANALYSIS
D74V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED    4  8
  XQ LOSS WILD-TYPE  9 11
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12                20 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8                11 
$`XQ LOSS MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59E 
       47.31         4.87        24.00        22.52        29.95        14.70 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-QM-A5NM 
        7.20         9.70        27.39         6.64         5.49         5.42 

$`XQ LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27         4.64        18.08        69.63        50.17        59.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       11.87        26.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        4.77        74.33         3.72        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-NG-A4VW 
       15.16        31.17 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             4.87              3.72 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            47.31             85.35 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            12.20             17.21 
[1] "4.9 - 47.3 (12.2)" "3.7 - 85.3 (17.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL        TCGA-N8-A4PM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP        TCGA-N8-A4PQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX        TCGA-NA-A4QY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
[1] "hr=" "2"  
D74V2, continuous
> q(save="no")
