
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6165970/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6165970/transformed.cor.cli.txt"

nPatients in clinical file=33, in cluster file=56, common to both=32
[1]  9 32
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             13              19 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             13              19 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
             3             29 
  KRAS MUTATED KRAS WILD-TYPE 
             3             29 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            28              4 
  TP53 MUTATED TP53 WILD-TYPE 
            28              4 
[1] "PPP2R1A MUTATION ANALYSIS"
[1] 3
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
               10                22 
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
               10                22 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              11               21 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              11               21 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             5             27 
  PTEN MUTATED PTEN WILD-TYPE 
             5             27 
[1] "PCDHAC2 MUTATION ANALYSIS"
[1] 3
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                4                28 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                4                28 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5               27 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5               27 
[1] "ZBTB7B MUTATION ANALYSIS"
[1] 3
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
               4               28 
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
               4               28 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 32 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM 
          NA           NA           NA         1439           NA           NA 
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
         730           NA           NA         2118           NA         1816 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
          NA           NA           NA           NA          497          424 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX 
         438          219          145          295         2261          833 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
          NA           NA         2596           NA           NA           NA 
TCGA-NG-A4VW TCGA-QM-A5NM 
          NA          165 
Variable 1:'AGE':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 32 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=20, binary=FALSE, numeric=TRUE

Clustering(1) Variable = FBXW7 MUTATION ANALYSIS
D1V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED    4  9
  FBXW7 WILD-TYPE  8 11
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             13              19 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              9              11 
$`FBXW7 MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        18.08        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-NA-A4QX 
       69.63        11.87        26.63        16.34        13.94        27.39 
TCGA-ND-A4WF 
        5.49 

$`FBXW7 WILD-TYPE`
TCGA-N5-A4R8 TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
      102.41        47.31         4.87        50.17        59.70        14.70 
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       13.71        14.40         7.20         4.77         9.70        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
        3.72         6.64        85.35        10.42        23.47        31.17 
TCGA-QM-A5NM 
        5.42 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           4.64            3.72 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          69.63          102.41 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          22.52           14.40 
[1] "4.6 - 69.6 (22.5)"  "3.7 - 102.4 (14.4)"
     TCGA-N5-A4R8      TCGA-N5-A4RA      TCGA-N5-A4RD      TCGA-N5-A4RF 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N5-A4RJ      TCGA-N5-A4RM      TCGA-N5-A4RN      TCGA-N5-A4RO 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-N5-A4RS      TCGA-N5-A4RT      TCGA-N5-A4RU      TCGA-N5-A4RV 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N5-A59E      TCGA-N5-A59F      TCGA-N8-A4PI      TCGA-N8-A4PL 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PM      TCGA-N8-A4PN      TCGA-N8-A4PO      TCGA-N8-A4PP 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PQ      TCGA-N8-A56S      TCGA-NA-A4QW      TCGA-NA-A4QX 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-NA-A4QY      TCGA-NA-A4R1      TCGA-NA-A5I1      TCGA-ND-A4W6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-ND-A4WA      TCGA-ND-A4WF      TCGA-NG-A4VW      TCGA-QM-A5NM 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N5-A4R8      TCGA-N5-A4RA      TCGA-N5-A4RD      TCGA-N5-A4RF 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N5-A4RJ      TCGA-N5-A4RM      TCGA-N5-A4RN      TCGA-N5-A4RO 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-N5-A4RS      TCGA-N5-A4RT      TCGA-N5-A4RU      TCGA-N5-A4RV 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N5-A59E      TCGA-N5-A59F      TCGA-N8-A4PI      TCGA-N8-A4PL 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PM      TCGA-N8-A4PN      TCGA-N8-A4PO      TCGA-N8-A4PP 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PQ      TCGA-N8-A56S      TCGA-NA-A4QW      TCGA-NA-A4QX 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-NA-A4QY      TCGA-NA-A4R1      TCGA-NA-A5I1      TCGA-ND-A4W6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-ND-A4WA      TCGA-ND-A4WF      TCGA-NG-A4VW      TCGA-QM-A5NM 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N5-A4R8      TCGA-N5-A4RA      TCGA-N5-A4RD      TCGA-N5-A4RF 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N5-A4RJ      TCGA-N5-A4RM      TCGA-N5-A4RN      TCGA-N5-A4RO 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-N5-A4RS      TCGA-N5-A4RT      TCGA-N5-A4RU      TCGA-N5-A4RV 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N5-A59E      TCGA-N5-A59F      TCGA-N8-A4PI      TCGA-N8-A4PL 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PM      TCGA-N8-A4PN      TCGA-N8-A4PO      TCGA-N8-A4PP 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-N8-A4PQ      TCGA-N8-A56S      TCGA-NA-A4QW      TCGA-NA-A4QX 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-NA-A4QY      TCGA-NA-A4R1      TCGA-NA-A5I1      TCGA-ND-A4W6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-ND-A4WA      TCGA-ND-A4WF      TCGA-NG-A4VW      TCGA-QM-A5NM 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED    1  2
  KRAS WILD-TYPE 11 18
  KRAS MUTATED KRAS WILD-TYPE 
             3             29 
  KRAS MUTATED KRAS WILD-TYPE 
             2             18 
$`KRAS MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RS TCGA-N8-A4PL 
       47.31        29.95        13.71 

$`KRAS WILD-TYPE`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
      102.41        52.27         4.64        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       22.52        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        16.34        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47         5.49        31.17         5.42 

  KRAS MUTATED KRAS WILD-TYPE 
         13.71           3.72 
  KRAS MUTATED KRAS WILD-TYPE 
         47.31         102.41 
  KRAS MUTATED KRAS WILD-TYPE 
         29.95          16.34 
[1] "13.7 - 47.3 (29.9)" "3.7 - 102.4 (16.3)"
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   11 17
  TP53 WILD-TYPE  1  3
  TP53 MUTATED TP53 WILD-TYPE 
            28              4 
  TP53 MUTATED TP53 WILD-TYPE 
            17              3 
$`TP53 MUTATED`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM 
      102.41        52.27         4.64        47.31        18.08         4.87 
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       24.00        22.52        29.95        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       14.70        11.87        26.63        13.71        16.34        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX 
       14.40         7.20         4.77         9.70        74.33        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-QM-A5NM 
        3.72         6.64        10.42         5.42 

$`TP53 WILD-TYPE`
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW 
       85.35        23.47         5.49        31.17 

  TP53 MUTATED TP53 WILD-TYPE 
          3.72           5.49 
  TP53 MUTATED TP53 WILD-TYPE 
        102.41          85.35 
  TP53 MUTATED TP53 WILD-TYPE 
         15.52          27.32 
[1] "3.7 - 102.4 (15.5)" "5.5 - 85.3 (27.3)" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
[1] "hr=" "1"  
D3V2, continuous

Clustering(4) Variable = PPP2R1A MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  PPP2R1A MUTATED    5  5
  PPP2R1A WILD-TYPE  7 15
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
               10                22 
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
                5                15 
$`PPP2R1A MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       47.31        50.17        14.70        13.71        13.94         7.20 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-ND-A4WF TCGA-QM-A5NM 
       74.33        27.39         5.49         5.42 

$`PPP2R1A WILD-TYPE`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
      102.41        52.27         4.64        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI 
       22.52        29.95        69.63        59.70        11.87        26.63 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QY TCGA-NA-A4R1 
       16.34        14.40         4.77         9.70         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
       85.35        10.42        23.47        31.17 

  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
             5.42              3.72 
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
            74.33            102.41 
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
            14.32             20.30 
[1] "5.4 - 74.3 (14.3)"  "3.7 - 102.4 (20.3)"
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED"   "PPP2R1A MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED"   "PPP2R1A MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED"   "PPP2R1A MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" "PPP2R1A WILD-TYPE"   "PPP2R1A MUTATED" 
[1] "hr=" "1.2"
D4V2, continuous

Clustering(5) Variable = PIK3CA MUTATION ANALYSIS
D5V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED    3  8
  PIK3CA WILD-TYPE  9 12
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              11               21 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               8               12 
$`PIK3CA MUTATED`
TCGA-N5-A4R8 TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
      102.41        47.31        18.08        22.52        29.95        69.63 
TCGA-N8-A4PM TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NG-A4VW 
       16.34         3.72        10.42         5.49        31.17 

$`PIK3CA WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27         4.64         4.87        24.00        50.17        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO 
       14.70        11.87        26.63        13.71        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 
        7.20         4.77         9.70        74.33        27.39         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-QM-A5NM 
       85.35        23.47         5.42 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            3.72             4.64 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          102.41            85.35 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           22.52            14.40 
[1] "3.7 - 102.4 (22.5)" "4.6 - 85.3 (14.4)" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous

Clustering(6) Variable = PTEN MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  PTEN MUTATED    2  3
  PTEN WILD-TYPE 10 17
  PTEN MUTATED PTEN WILD-TYPE 
             5             27 
  PTEN MUTATED PTEN WILD-TYPE 
             3             17 
$`PTEN MUTATED`
TCGA-N5-A4RF TCGA-N8-A4PI TCGA-NA-A4R1 TCGA-NG-A4VW TCGA-QM-A5NM 
       47.31        26.63         6.64        31.17         5.42 

$`PTEN WILD-TYPE`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
      102.41        52.27         4.64        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       11.87        13.71        16.34        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 
        4.77         9.70        74.33        27.39         3.72        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       10.42        23.47         5.49 

  PTEN MUTATED PTEN WILD-TYPE 
          5.42           3.72 
  PTEN MUTATED PTEN WILD-TYPE 
         47.31         102.41 
  PTEN MUTATED PTEN WILD-TYPE 
         26.63          16.34 
[1] "5.4 - 47.3 (26.6)"  "3.7 - 102.4 (16.3)"
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-N5-A4R8     TCGA-N5-A4RA     TCGA-N5-A4RD     TCGA-N5-A4RF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-N5-A4RJ     TCGA-N5-A4RM     TCGA-N5-A4RN     TCGA-N5-A4RO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A4RS     TCGA-N5-A4RT     TCGA-N5-A4RU     TCGA-N5-A4RV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N5-A59E     TCGA-N5-A59F     TCGA-N8-A4PI     TCGA-N8-A4PL 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-N8-A4PM     TCGA-N8-A4PN     TCGA-N8-A4PO     TCGA-N8-A4PP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-N8-A4PQ     TCGA-N8-A56S     TCGA-NA-A4QW     TCGA-NA-A4QX 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-NA-A4QY     TCGA-NA-A4R1     TCGA-NA-A5I1     TCGA-ND-A4W6 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ND-A4WA     TCGA-ND-A4WF     TCGA-NG-A4VW     TCGA-QM-A5NM 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous

Clustering(7) Variable = PCDHAC2 MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                0  1
  PCDHAC2 MUTATED    2  2
  PCDHAC2 WILD-TYPE 10 18
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                4                28 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                2                18 
$`PCDHAC2 MUTATED`
TCGA-N5-A4R8 TCGA-N5-A4RF TCGA-N8-A4PM TCGA-N8-A56S 
      102.41        47.31        16.34         9.70 

$`PCDHAC2 WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        13.71        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
       74.33        27.39         3.72         6.64        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47         5.49        31.17         5.42 

  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
             9.70              3.72 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
           102.41             85.35 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
           31.825            16.390 
[1] "9.7 - 102.4 (31.8)" "3.7 - 85.3 (16.4)" 
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A4R8        TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" 
       TCGA-N5-A4RJ        TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A4RS        TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N8-A4PI        TCGA-N8-A4PL 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-NA-A4QW        TCGA-NA-A4QX 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R1        TCGA-NA-A5I1        TCGA-ND-A4W6 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-ND-A4WA        TCGA-ND-A4WF        TCGA-NG-A4VW        TCGA-QM-A5NM 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
[1] "hr=" "3.3"
D7V2, continuous

Clustering(8) Variable = PIK3R1 MUTATION ANALYSIS
D8V1, survival
                  sevent
clus2               0  1
  PIK3R1 MUTATED    1  4
  PIK3R1 WILD-TYPE 11 16
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5               27 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               4               16 
$`PIK3R1 MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RS TCGA-N8-A4PI TCGA-N8-A4PN TCGA-NA-A4QX 
        4.64        29.95        26.63        13.94        27.39 

$`PIK3R1 WILD-TYPE`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
      102.41        52.27        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       22.52        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       13.71        16.34        14.40         7.20         4.77         9.70 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            4.64             3.72 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           29.95           102.41 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           26.63            16.34 
[1] "4.6 - 29.9 (26.6)"  "3.7 - 102.4 (16.3)"
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr=" "1.6"
D8V2, continuous

Clustering(9) Variable = ZBTB7B MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2               0  1
  ZBTB7B MUTATED    1  3
  ZBTB7B WILD-TYPE 11 17
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
               4               28 
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
               3               17 
$`ZBTB7B MUTATED`
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RT TCGA-NG-A4VW 
      102.41        52.27        69.63        31.17 

$`ZBTB7B WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.64        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        50.17        59.70        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       13.71        16.34        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       10.42        23.47         5.49         5.42 

  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
           31.17             3.72 
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
          102.41            85.35 
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
           60.95            14.55 
[1] "31.2 - 102.4 (61.0)" "3.7 - 85.3 (14.6)"  
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "ZBTB7B MUTATED"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
"ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "ZBTB7B MUTATED"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
"ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4R8       TCGA-N5-A4RA       TCGA-N5-A4RD       TCGA-N5-A4RF 
  "ZBTB7B MUTATED"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RJ       TCGA-N5-A4RM       TCGA-N5-A4RN       TCGA-N5-A4RO 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A4RS       TCGA-N5-A4RT       TCGA-N5-A4RU       TCGA-N5-A4RV 
"ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N5-A59E       TCGA-N5-A59F       TCGA-N8-A4PI       TCGA-N8-A4PL 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PM       TCGA-N8-A4PN       TCGA-N8-A4PO       TCGA-N8-A4PP 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-N8-A4PQ       TCGA-N8-A56S       TCGA-NA-A4QW       TCGA-NA-A4QX 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-NA-A4QY       TCGA-NA-A4R1       TCGA-NA-A5I1       TCGA-ND-A4W6 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE" 
      TCGA-ND-A4WA       TCGA-ND-A4WF       TCGA-NG-A4VW       TCGA-QM-A5NM 
"ZBTB7B WILD-TYPE" "ZBTB7B WILD-TYPE"   "ZBTB7B MUTATED" "ZBTB7B WILD-TYPE" 
[1] "hr=" "3.1"
D9V2, continuous
> q(save="no")
