Clustering of mRNAseq gene expression: consensus hierarchical
Kidney Chromophobe (Primary solid tumor)
15 January 2014  |  analyses__2014_01_15
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Clustering of mRNAseq gene expression: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C1F18X4F
- Overview
+ Introduction
- Summary

The 1500 most variable genes were selected. Consensus average linkage hierarchical clustering of 66 samples and 1500 genes identified 5 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.

- Results
+ Gene expression patterns of molecular subtypes
+ Consensus and correlation matrix
+ Silhouette widths
+ Samples assignment with silhouette width
+ Marker genes of each subtype
+ Methods & Data