Clustering of RPPA data: consensus hierarchical
Lung Squamous Cell Carcinoma (Primary solid tumor)
15 January 2014
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analyses__2014_01_15
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team
(Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2014):
Clustering of RPPA data: consensus hierarchical.
Broad Institute of MIT and Harvard.
doi:10.7908/C1F18X5W
Overview
Introduction
Summary
174 proteins were selected. Consensus average linkage hierarchical clustering of 195 samples and 174 proteins identified 4 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.
Results
Protein expression patterns of molecular subtypes
Consensus and correlation matrix
Silhouette widths
Samples assignment with silhouette width
Marker proteins of each subtype
Methods & Data
Copyright © 2014
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.