name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-CH-5737-01A-11D-1576-08	117	116	1	89	8.547009e-03	0	coding only	34834024	25	87	7.176891e-07	2.497558e-06
TCGA-CH-5738-01A-11D-1576-08	30	30	0	24	0	0	coding only	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-CH-5739-01A-11D-1576-08	303	298	5	228	1.650165e-02	0	coding only	34834024	68	222	1.952114e-06	6.373079e-06
TCGA-CH-5740-01A-11D-1576-08	33	32	1	25	3.030303e-02	0	coding only	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-CH-5741-01A-11D-1576-08	45	44	1	35	2.222222e-02	0	coding only	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-CH-5743-01A-21D-1576-08	1	0	1	0	1	0	coding only	34834024	0	0	0	0
TCGA-CH-5744-01A-11D-1576-08	44	42	2	28	4.545455e-02	0	coding only	34834024	14	26	4.019059e-07	7.463967e-07
TCGA-CH-5745-01A-11D-1576-08	41	41	0	32	0	0	coding only	34834024	9	31	2.583681e-07	8.899345e-07
TCGA-CH-5746-01A-11D-1576-08	31	29	2	25	6.451613e-02	0	coding only	34834024	4	22	1.148303e-07	6.315664e-07
TCGA-CH-5748-01A-11D-1576-08	54	52	2	36	3.703704e-02	0	coding only	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-CH-5750-01A-11D-1576-08	67	67	0	46	0	0	coding only	34834024	20	45	5.741513e-07	1.291840e-06
TCGA-CH-5751-01A-11D-1576-08	42	38	4	31	9.523810e-02	0	coding only	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-CH-5752-01A-11D-1576-08	77	76	1	58	1.298701e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-CH-5753-01A-11D-1576-08	66	61	5	55	7.575758e-02	0	coding only	34834024	5	53	1.435378e-07	1.521501e-06
TCGA-CH-5754-01A-11D-1576-08	115	114	1	82	8.695652e-03	0	coding only	34834024	31	81	8.899345e-07	2.325313e-06
TCGA-CH-5761-01A-11D-1576-08	66	66	0	51	0	0	coding only	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-CH-5762-01A-11D-1576-08	119	116	3	91	2.521008e-02	0	coding only	34834024	22	86	6.315664e-07	2.468851e-06
TCGA-CH-5763-01A-11D-1576-08	19	18	1	14	5.263158e-02	0	coding only	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-CH-5764-01A-21D-1576-08	61	61	0	56	0	0	coding only	34834024	4	54	1.148303e-07	1.550208e-06
TCGA-CH-5765-01A-11D-1576-08	44	44	0	31	0	0	coding only	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-CH-5766-01A-11D-1576-08	46	45	1	33	2.173913e-02	0	coding only	34834024	12	32	3.444908e-07	9.186421e-07
TCGA-CH-5767-01A-11D-1786-08	55	54	1	43	1.818182e-02	0	coding only	34834024	11	42	3.157832e-07	1.205718e-06
TCGA-CH-5768-01A-11D-1576-08	81	80	1	61	1.234568e-02	0	coding only	34834024	16	61	4.593210e-07	1.751161e-06
TCGA-CH-5771-01A-21D-1576-08	38	35	3	28	7.894737e-02	0	coding only	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-CH-5772-01A-11D-1576-08	97	94	3	68	3.092784e-02	0	coding only	34834024	25	64	7.176891e-07	1.837284e-06
TCGA-CH-5788-01A-11D-1576-08	62	62	0	45	0	0	coding only	34834024	16	43	4.593210e-07	1.234425e-06
TCGA-CH-5789-01A-11D-1576-08	23	20	3	13	1.304348e-01	0	coding only	34834024	7	12	2.009530e-07	3.444908e-07
TCGA-CH-5790-01A-11D-1576-08	38	36	2	25	5.263158e-02	0	coding only	34834024	10	23	2.870756e-07	6.602740e-07
TCGA-CH-5791-01A-11D-1576-08	66	63	3	48	4.545455e-02	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-CH-5792-01A-11D-1576-08	49	47	2	39	4.081633e-02	0	coding only	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-CH-5794-01A-11D-1576-08	49	47	2	36	4.081633e-02	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-EJ-5494-01A-01D-1576-08	43	43	0	34	0	0	coding only	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-EJ-5495-01A-01D-1576-08	93	84	9	69	9.677419e-02	0	coding only	34834024	14	68	4.019059e-07	1.952114e-06
TCGA-EJ-5496-01A-01D-1576-08	60	59	1	45	1.666667e-02	0	coding only	34834024	13	43	3.731983e-07	1.234425e-06
TCGA-EJ-5497-01A-02D-1576-08	45	42	3	31	6.666667e-02	0	coding only	34834024	10	29	2.870756e-07	8.325194e-07
TCGA-EJ-5498-01A-01D-1576-08	51	48	3	35	5.882353e-02	0	coding only	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-EJ-5499-01A-01D-1576-08	48	44	4	32	8.333333e-02	0	coding only	34834024	10	31	2.870756e-07	8.899345e-07
TCGA-EJ-5501-01A-01D-1576-08	30	28	2	18	6.666667e-02	0	coding only	34834024	9	18	2.583681e-07	5.167362e-07
TCGA-EJ-5502-01A-01D-1576-08	9	9	0	8	0	0	coding only	34834024	1	8	2.870756e-08	2.296605e-07
TCGA-EJ-5503-01A-01D-1576-08	21	21	0	17	0	0	coding only	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-EJ-5504-01A-01D-1576-08	65	64	1	49	1.538462e-02	0	coding only	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-EJ-5505-01A-01D-1576-08	40	38	2	31	5.000000e-02	0	coding only	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-EJ-5506-01A-01D-1576-08	13	13	0	9	0	0	coding only	34834024	4	8	1.148303e-07	2.296605e-07
TCGA-EJ-5507-01A-01D-1576-08	56	55	1	44	1.785714e-02	0	coding only	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-EJ-5508-01A-02D-1576-08	44	44	0	34	0	0	coding only	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-EJ-5509-01A-01D-1576-08	34	32	2	23	5.882353e-02	0	coding only	34834024	8	23	2.296605e-07	6.602740e-07
TCGA-EJ-5510-01A-01D-1576-08	31	30	1	21	3.225806e-02	0	coding only	34834024	9	19	2.583681e-07	5.454437e-07
TCGA-EJ-5511-01A-01D-1576-08	49	49	0	36	0	0	coding only	34834024	13	34	3.731983e-07	9.760572e-07
TCGA-EJ-5512-01A-01D-1576-08	21	20	1	16	4.761905e-02	0	coding only	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-EJ-5514-01A-01D-1576-08	66	64	2	44	3.030303e-02	0	coding only	34834024	20	43	5.741513e-07	1.234425e-06
TCGA-EJ-5515-01A-01D-1576-08	32	31	1	28	3.125000e-02	0	coding only	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-EJ-5516-01A-01D-1576-08	46	45	1	36	2.173913e-02	0	coding only	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-EJ-5517-01A-01D-1576-08	37	35	2	28	5.405405e-02	0	coding only	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-EJ-5518-01A-01D-1576-08	60	60	0	44	0	0	coding only	34834024	16	41	4.593210e-07	1.177010e-06
TCGA-EJ-5519-01A-01D-1576-08	120	119	1	87	8.333333e-03	0	coding only	34834024	30	82	8.612269e-07	2.354020e-06
TCGA-EJ-5521-01A-01D-1576-08	72	72	0	50	0	0	coding only	34834024	21	49	6.028589e-07	1.406671e-06
TCGA-EJ-5522-01A-01D-1576-08	48	45	3	25	6.250000e-02	0	coding only	34834024	19	25	5.454437e-07	7.176891e-07
TCGA-EJ-5524-01A-01D-1576-08	44	44	0	36	0	0	coding only	34834024	7	36	2.009530e-07	1.033472e-06
TCGA-EJ-5525-01A-01D-1576-08	87	87	0	70	0	0	coding only	34834024	17	64	4.880286e-07	1.837284e-06
TCGA-EJ-5526-01A-01D-1576-08	40	39	1	31	2.500000e-02	0	coding only	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-EJ-5527-01A-01D-1576-08	54	51	3	32	5.555556e-02	0	coding only	34834024	18	31	5.167362e-07	8.899345e-07
TCGA-EJ-5530-01A-01D-1576-08	80	76	4	61	5.000000e-02	0	coding only	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-EJ-5532-01A-01D-1576-08	32	32	0	23	0	0	coding only	34834024	9	21	2.583681e-07	6.028589e-07
TCGA-EJ-5542-01A-01D-1576-08	38	37	1	28	2.631579e-02	0	coding only	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-EJ-7115-01A-11D-2114-08	59	58	1	49	1.694915e-02	0	coding only	34834024	8	47	2.296605e-07	1.349256e-06
TCGA-EJ-7123-01A-11D-1961-08	253	250	3	176	1.185771e-02	0	coding only	34834024	73	174	2.095652e-06	4.995116e-06
TCGA-EJ-7125-01A-11D-1961-08	638	636	2	454	3.134796e-03	0	coding only	34834024	181	436	5.196069e-06	1.251650e-05
TCGA-EJ-7314-01A-31D-2114-08	51	50	1	38	1.960784e-02	0	coding only	34834024	11	36	3.157832e-07	1.033472e-06
TCGA-EJ-7315-01A-31D-2114-08	46	44	2	34	4.347826e-02	0	coding only	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-EJ-7317-01A-31D-2114-08	64	61	3	42	4.687500e-02	0	coding only	34834024	17	38	4.880286e-07	1.090887e-06
TCGA-EJ-7321-01A-31D-2260-08	52	50	2	37	3.846154e-02	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-EJ-7327-01A-11D-2114-08	37	37	0	29	0	0	coding only	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-EJ-7328-01A-31D-2114-08	50	49	1	35	2.000000e-02	0	coding only	34834024	14	34	4.019059e-07	9.760572e-07
TCGA-EJ-7330-01A-11D-2114-08	68	67	1	52	1.470588e-02	0	coding only	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-EJ-7331-01A-11D-2114-08	52	50	2	38	3.846154e-02	0	coding only	34834024	12	37	3.444908e-07	1.062180e-06
TCGA-EJ-7781-01A-11D-2114-08	76	73	3	55	3.947368e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-EJ-7783-01A-11D-2114-08	51	51	0	37	0	0	coding only	34834024	12	35	3.444908e-07	1.004765e-06
TCGA-EJ-7784-01A-11D-2114-08	78	76	2	59	2.564103e-02	0	coding only	34834024	15	58	4.306135e-07	1.665039e-06
TCGA-EJ-7785-01A-11D-2114-08	29	29	0	23	0	0	coding only	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-EJ-7786-01A-11D-2114-08	47	46	1	34	2.127660e-02	0	coding only	34834024	12	33	3.444908e-07	9.473496e-07
TCGA-EJ-7788-01A-11D-2114-08	48	44	4	31	8.333333e-02	0	coding only	34834024	12	28	3.444908e-07	8.038118e-07
TCGA-EJ-7789-01A-11D-2114-08	44	43	1	35	2.272727e-02	0	coding only	34834024	7	34	2.009530e-07	9.760572e-07
TCGA-EJ-7791-01A-11D-2114-08	32	30	2	23	6.250000e-02	0	coding only	34834024	7	22	2.009530e-07	6.315664e-07
TCGA-EJ-7792-01A-11D-2114-08	21	20	1	18	4.761905e-02	0	coding only	34834024	2	16	5.741513e-08	4.593210e-07
TCGA-EJ-7793-01A-31D-2260-08	27	26	1	20	3.703704e-02	0	coding only	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-EJ-7794-01A-11D-2114-08	28	27	1	21	3.571429e-02	0	coding only	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-EJ-7797-01A-11D-2260-08	55	53	2	43	3.636364e-02	0	coding only	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-EJ-8468-01A-21D-2395-08	35	34	1	25	2.857143e-02	0	coding only	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-EJ-8474-01A-11D-2395-08	71	70	1	48	1.408451e-02	0	coding only	34834024	20	48	5.741513e-07	1.377963e-06
TCGA-EJ-A46B-01A-31D-A257-08	3	3	0	3	0	0	coding only	34834024	0	2	0	5.741513e-08
TCGA-EJ-A46D-01A-21D-A257-08	19	17	2	13	1.052632e-01	0	coding only	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-EJ-A46E-01A-31D-A257-08	10	9	1	8	1.000000e-01	0	coding only	34834024	1	7	2.870756e-08	2.009530e-07
TCGA-EJ-A46F-01A-31D-A257-08	48	44	4	32	8.333333e-02	0	coding only	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-EJ-A46G-01A-31D-A26M-08	71	69	2	51	2.816901e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-EJ-A46H-01A-31D-A26M-08	2	2	0	2	0	0	coding only	34834024	0	2	0	5.741513e-08
TCGA-EJ-A46I-01A-12D-A26M-08	16	14	2	13	1.250000e-01	0	coding only	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-EJ-A65B-01A-12D-A30E-08	51	50	1	46	1.960784e-02	0	coding only	34834024	4	45	1.148303e-07	1.291840e-06
TCGA-EJ-A65D-01A-11D-A30E-08	46	43	3	36	6.521739e-02	0	coding only	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-EJ-A65E-01A-11D-A29Q-08	51	49	2	37	3.921569e-02	0	coding only	34834024	12	33	3.444908e-07	9.473496e-07
TCGA-EJ-A65F-01A-21D-A30X-08	91	90	1	69	1.098901e-02	0	coding only	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-EJ-A65G-01A-21D-A29Q-08	37	35	2	30	5.405405e-02	0	coding only	34834024	5	27	1.435378e-07	7.751042e-07
TCGA-EJ-A65J-01A-11D-A30X-08	55	53	2	39	3.636364e-02	0	coding only	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-EJ-A65M-01A-11D-A29Q-08	54	53	1	43	1.851852e-02	0	coding only	34834024	9	43	2.583681e-07	1.234425e-06
TCGA-FC-7708-01A-11D-2114-08	41	41	0	30	0	0	coding only	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-FC-7961-01A-11D-A29Q-08	73	71	2	56	2.739726e-02	0	coding only	34834024	15	52	4.306135e-07	1.492793e-06
TCGA-FC-A4JI-01A-11D-A257-08	43	42	1	31	2.325581e-02	0	coding only	34834024	11	27	3.157832e-07	7.751042e-07
TCGA-FC-A5OB-01A-11D-A29Q-08	44	43	1	30	2.272727e-02	0	coding only	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-FC-A66V-01A-21D-A30E-08	7	7	0	5	0	0	coding only	34834024	2	5	5.741513e-08	1.435378e-07
TCGA-FC-A6HD-01A-11D-A31L-08	47	44	3	31	6.382979e-02	0	coding only	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-G9-6329-01A-13D-1961-08	31	31	0	23	0	0	coding only	34834024	8	22	2.296605e-07	6.315664e-07
TCGA-G9-6332-01A-11D-1786-08	41	38	3	30	7.317073e-02	0	coding only	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-G9-6333-01A-12D-1961-08	105	105	0	69	0	0	coding only	34834024	36	65	1.033472e-06	1.865992e-06
TCGA-G9-6336-01A-11D-1786-08	30	28	2	21	6.666667e-02	0	coding only	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-G9-6338-01A-12D-1961-08	165	159	6	109	3.636364e-02	1	exome+100bp flanks	34834024	49	103	1.406671e-06	2.956879e-06
TCGA-G9-6339-01A-12D-A30X-08	49	49	0	38	0	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-G9-6342-01A-11D-1961-08	546	543	3	354	5.494505e-03	0	coding only	34834024	184	347	5.282192e-06	9.961525e-06
TCGA-G9-6343-01A-21D-1961-08	59	56	3	38	5.084746e-02	0	coding only	34834024	18	36	5.167362e-07	1.033472e-06
TCGA-G9-6347-01A-11D-A31L-08	33	33	0	23	0	0	coding only	34834024	9	21	2.583681e-07	6.028589e-07
TCGA-G9-6348-01A-11D-1786-08	56	55	1	35	1.785714e-02	0	coding only	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-G9-6351-01A-21D-1961-08	235	234	1	146	4.255319e-03	0	coding only	34834024	79	144	2.267898e-06	4.133889e-06
TCGA-G9-6353-01A-11D-1961-08	23	21	2	15	8.695652e-02	0	coding only	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-G9-6354-01A-11D-A30X-08	42	41	1	30	2.380952e-02	0	coding only	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-G9-6356-01A-11D-1786-08	38	37	1	32	2.631579e-02	0	coding only	34834024	4	30	1.148303e-07	8.612269e-07
TCGA-G9-6361-01A-21D-1961-08	59	56	3	44	5.084746e-02	0	coding only	34834024	11	42	3.157832e-07	1.205718e-06
TCGA-G9-6362-01A-11D-1786-08	65	62	3	35	4.615385e-02	0	coding only	34834024	25	32	7.176891e-07	9.186421e-07
TCGA-G9-6363-01A-21D-1786-08	66	65	1	53	1.515152e-02	0	coding only	34834024	11	50	3.157832e-07	1.435378e-06
TCGA-G9-6364-01A-21D-1786-08	28	26	2	21	7.142857e-02	0	coding only	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-G9-6365-01A-11D-1786-08	53	51	2	42	3.773585e-02	0	coding only	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-G9-6366-01A-11D-2114-08	48	46	2	35	4.166667e-02	0	coding only	34834024	10	33	2.870756e-07	9.473496e-07
TCGA-G9-6367-01A-11D-1786-08	8	8	0	6	0	0	coding only	34834024	2	5	5.741513e-08	1.435378e-07
TCGA-G9-6369-01A-21D-1961-08	62	61	1	46	1.612903e-02	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-G9-6370-01A-11D-1786-08	5	5	0	5	0	0	coding only	34834024	0	5	0	1.435378e-07
TCGA-G9-6371-01A-11D-1786-08	49	46	3	35	6.122449e-02	0	coding only	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-G9-6377-01A-11D-1961-08	69	69	0	50	0	0	coding only	34834024	19	49	5.454437e-07	1.406671e-06
TCGA-G9-6378-01A-11D-1786-08	45	43	2	29	4.444444e-02	0	coding only	34834024	14	26	4.019059e-07	7.463967e-07
TCGA-G9-6379-01A-11D-A31L-08	32	31	1	23	3.125000e-02	0	coding only	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-G9-6384-01A-11D-1786-08	32	32	0	25	0	0	coding only	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-G9-6385-01A-11D-1786-08	23	23	0	18	0	0	coding only	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-G9-6494-01A-11D-1786-08	46	46	0	36	0	0	coding only	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-G9-6496-01A-11D-1786-08	48	46	2	37	4.166667e-02	0	coding only	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-G9-6498-01A-12D-A30X-08	34	34	0	26	0	0	coding only	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-G9-6499-01A-12D-1961-08	82	81	1	61	1.219512e-02	0	coding only	34834024	20	58	5.741513e-07	1.665039e-06
TCGA-G9-7510-01A-11D-2260-08	44	44	0	35	0	0	coding only	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-G9-7519-01A-11D-2260-08	45	44	1	39	2.222222e-02	0	coding only	34834024	5	37	1.435378e-07	1.062180e-06
TCGA-G9-7521-01A-11D-2260-08	45	44	1	33	2.222222e-02	0	coding only	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-G9-7522-01A-11D-2260-08	23	21	2	18	8.695652e-02	0	coding only	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-G9-7523-01A-11D-2260-08	29	27	2	18	6.896552e-02	0	coding only	34834024	9	18	2.583681e-07	5.167362e-07
TCGA-G9-7525-01A-31D-2260-08	44	43	1	35	2.272727e-02	0	coding only	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-H9-7775-01A-11D-2114-08	38	38	0	26	0	0	coding only	34834024	12	24	3.444908e-07	6.889816e-07
TCGA-H9-A6BX-01A-31D-A30X-08	14	14	0	7	0	0	coding only	34834024	7	7	2.009530e-07	2.009530e-07
TCGA-H9-A6BY-01A-11D-A30E-08	43	40	3	32	6.976744e-02	0	coding only	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-HC-7075-01A-11D-1961-08	66	64	2	51	3.030303e-02	0	coding only	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-HC-7077-01A-11D-1961-08	91	88	3	65	3.296703e-02	0	coding only	34834024	22	62	6.315664e-07	1.779869e-06
TCGA-HC-7078-01A-11D-2114-08	44	43	1	36	2.272727e-02	0	coding only	34834024	7	34	2.009530e-07	9.760572e-07
TCGA-HC-7079-01A-11D-1961-08	34	30	4	19	1.176471e-01	0	coding only	34834024	10	18	2.870756e-07	5.167362e-07
TCGA-HC-7080-01A-11D-1961-08	123	122	1	80	8.130081e-03	0	coding only	34834024	42	75	1.205718e-06	2.153067e-06
TCGA-HC-7081-01A-11D-1961-08	526	520	6	362	1.140684e-02	0	coding only	34834024	152	348	4.363550e-06	9.990233e-06
TCGA-HC-7209-01A-11D-2114-08	30	29	1	19	3.333333e-02	0	coding only	34834024	10	17	2.870756e-07	4.880286e-07
TCGA-HC-7210-01A-11D-2114-08	43	43	0	31	0	0	coding only	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-HC-7211-01A-11D-2114-08	30	30	0	24	0	0	coding only	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-HC-7212-01A-11D-2114-08	44	44	0	36	0	0	coding only	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-HC-7213-01A-11D-2114-08	52	51	1	36	1.923077e-02	0	coding only	34834024	14	33	4.019059e-07	9.473496e-07
TCGA-HC-7230-01A-11D-2114-08	38	37	1	30	2.631579e-02	0	coding only	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-HC-7231-01A-11D-2114-08	48	48	0	31	0	0	coding only	34834024	16	28	4.593210e-07	8.038118e-07
TCGA-HC-7232-01A-11D-2114-08	47	45	2	31	4.255319e-02	0	coding only	34834024	14	30	4.019059e-07	8.612269e-07
TCGA-HC-7233-01A-11D-2114-08	55	54	1	41	1.818182e-02	0	coding only	34834024	13	39	3.731983e-07	1.119595e-06
TCGA-HC-7736-01A-11D-2114-08	34	33	1	25	2.941176e-02	0	coding only	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-HC-7737-01A-11D-2114-08	29	28	1	26	3.448276e-02	0	coding only	34834024	2	25	5.741513e-08	7.176891e-07
TCGA-HC-7738-01A-11D-2114-08	58	57	1	48	1.724138e-02	0	coding only	34834024	9	44	2.583681e-07	1.263133e-06
TCGA-HC-7740-01A-11D-2114-08	29	27	2	20	6.896552e-02	0	coding only	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-HC-7742-01A-11D-2114-08	49	48	1	38	2.040816e-02	0	coding only	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-HC-7744-01A-11D-2114-08	44	43	1	39	2.272727e-02	0	coding only	34834024	4	37	1.148303e-07	1.062180e-06
TCGA-HC-7745-01A-11D-2114-08	53	51	2	35	3.773585e-02	0	coding only	34834024	15	34	4.306135e-07	9.760572e-07
TCGA-HC-7747-01A-11D-2114-08	68	68	0	51	0	0	coding only	34834024	17	48	4.880286e-07	1.377963e-06
TCGA-HC-7748-01A-11D-2114-08	38	37	1	29	2.631579e-02	0	coding only	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-HC-7749-01A-11D-2114-08	76	76	0	66	0	0	coding only	34834024	9	61	2.583681e-07	1.751161e-06
TCGA-HC-7750-01A-11D-2114-08	41	39	2	29	4.878049e-02	0	coding only	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-HC-7752-01A-11D-2114-08	52	49	3	40	5.769231e-02	0	coding only	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-HC-7817-01B-11D-A29Q-08	34	33	1	23	2.941176e-02	0	coding only	34834024	9	22	2.583681e-07	6.315664e-07
TCGA-HC-7818-01A-11D-2114-08	48	48	0	36	0	0	coding only	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-HC-7819-01A-11D-2114-08	38	35	3	26	7.894737e-02	0	coding only	34834024	9	26	2.583681e-07	7.463967e-07
TCGA-HC-7820-01A-11D-2114-08	48	47	1	41	2.083333e-02	0	coding only	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-HC-7821-01A-12D-2114-08	38	37	1	24	2.631579e-02	0	coding only	34834024	13	23	3.731983e-07	6.602740e-07
TCGA-HC-8213-01A-11D-A29Q-08	24	24	0	20	0	0	coding only	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-HC-8216-01A-11D-A29Q-08	156	154	2	115	1.282051e-02	0	coding only	34834024	37	111	1.062180e-06	3.186540e-06
TCGA-HC-8256-01A-11D-2260-08	44	44	0	31	0	0	coding only	34834024	12	26	3.444908e-07	7.463967e-07
TCGA-HC-8257-01A-11D-2260-08	65	64	1	43	1.538462e-02	0	coding only	34834024	20	42	5.741513e-07	1.205718e-06
TCGA-HC-8258-01A-11D-2260-08	26	25	1	23	3.846154e-02	0	coding only	34834024	1	20	2.870756e-08	5.741513e-07
TCGA-HC-8259-01A-11D-2260-08	74	73	1	56	1.351351e-02	0	coding only	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-HC-8260-01A-11D-2260-08	19	18	1	13	5.263158e-02	0	coding only	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-HC-8261-01A-11D-2260-08	48	47	1	33	2.083333e-02	0	coding only	34834024	13	29	3.731983e-07	8.325194e-07
TCGA-HC-8262-01A-11D-2260-08	45	42	3	31	6.666667e-02	0	coding only	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-HC-8264-01B-11D-2395-08	49	48	1	38	2.040816e-02	0	coding only	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-HC-8265-01A-11D-2260-08	91	90	1	67	1.098901e-02	0	coding only	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-HC-8266-01A-11D-2260-08	35	34	1	25	2.857143e-02	0	coding only	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-HC-A4ZV-01A-11D-A26M-08	137	134	3	105	2.189781e-02	0	coding only	34834024	27	101	7.751042e-07	2.899464e-06
TCGA-HC-A631-01A-11D-A29Q-08	53	53	0	39	0	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-HC-A632-01A-11D-A29Q-08	53	51	2	38	3.773585e-02	0	coding only	34834024	13	36	3.731983e-07	1.033472e-06
TCGA-HC-A6AL-01A-11D-A30E-08	66	61	5	42	7.575758e-02	0	coding only	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-HC-A6AN-01A-11D-A30E-08	48	47	1	38	2.083333e-02	0	coding only	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-HC-A6AO-01A-11D-A30E-08	50	50	0	28	0	0	coding only	34834024	22	24	6.315664e-07	6.889816e-07
TCGA-HC-A6AP-01A-11D-A30E-08	50	50	0	43	0	0	coding only	34834024	6	43	1.722454e-07	1.234425e-06
TCGA-HC-A6AQ-01A-11D-A30E-08	34	34	0	22	0	0	coding only	34834024	11	21	3.157832e-07	6.028589e-07
TCGA-HC-A6AS-01A-11D-A30E-08	41	38	3	31	7.317073e-02	0	coding only	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-HC-A6HX-01A-11D-A31L-08	30	30	0	24	0	0	coding only	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-HC-A6HY-01A-11D-A31L-08	38	36	2	28	5.263158e-02	0	coding only	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-HI-7168-01A-11D-2114-08	64	62	2	40	3.125000e-02	0	coding only	34834024	19	36	5.454437e-07	1.033472e-06
TCGA-HI-7169-01A-11D-2114-08	62	62	0	42	0	0	coding only	34834024	20	38	5.741513e-07	1.090887e-06
TCGA-HI-7170-01A-11D-2114-08	38	36	2	28	5.263158e-02	0	coding only	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-HI-7171-01A-12D-2114-08	53	49	4	33	7.547170e-02	0	coding only	34834024	15	30	4.306135e-07	8.612269e-07
TCGA-J4-8198-01A-11D-2260-08	41	39	2	32	4.878049e-02	0	coding only	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-J4-8200-01A-11D-A29Q-08	29	29	0	22	0	0	coding only	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-J4-A67K-01A-21D-A30E-08	42	42	0	34	0	0	coding only	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-J4-A67L-01A-11D-A30E-08	45	42	3	30	6.666667e-02	0	coding only	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-J4-A67M-01A-11D-A30E-08	48	47	1	33	2.083333e-02	0	coding only	34834024	12	27	3.444908e-07	7.751042e-07
TCGA-J4-A67N-01A-11D-A30E-08	41	41	0	31	0	0	coding only	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-J4-A67O-01A-11D-A30E-08	30	27	3	19	1.000000e-01	0	coding only	34834024	8	18	2.296605e-07	5.167362e-07
TCGA-J4-A67Q-01A-21D-A30E-08	33	32	1	23	3.030303e-02	0	coding only	34834024	9	22	2.583681e-07	6.315664e-07
TCGA-J4-A67R-01A-21D-A30E-08	39	37	2	27	5.128205e-02	0	coding only	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-J4-A67S-01A-11D-A30E-08	27	27	0	22	0	0	coding only	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-J4-A67T-01A-11D-A30X-08	23	22	1	15	4.347826e-02	0	coding only	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-J4-A6G1-01A-11D-A30X-08	22	22	0	16	0	0	coding only	34834024	6	16	1.722454e-07	4.593210e-07
TCGA-J4-A6G3-01A-11D-A30X-08	38	35	3	26	7.894737e-02	0	coding only	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-J4-A6M7-01A-11D-A31L-08	25	25	0	15	0	0	coding only	34834024	8	15	2.296605e-07	4.306135e-07
TCGA-J9-A52B-01A-11D-A26M-08	38	35	3	32	7.894737e-02	0	coding only	34834024	3	31	8.612269e-08	8.899345e-07
TCGA-J9-A52C-01A-11D-A26M-08	694	690	4	484	5.763689e-03	0	coding only	34834024	202	463	5.798928e-06	1.329160e-05
TCGA-J9-A52D-01A-11D-A29Q-08	56	53	3	39	5.357143e-02	0	coding only	34834024	12	38	3.444908e-07	1.090887e-06
TCGA-J9-A52E-01A-11D-A26M-08	0	0	0	0	NaN	0	coding only	34834024	0	0	0	0
TCGA-KC-A4BN-01A-61D-A257-08	20	20	0	18	0	0	coding only	34834024	2	17	5.741513e-08	4.880286e-07
TCGA-KC-A4BR-01A-32D-A257-08	14	14	0	11	0	0	coding only	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-KC-A4BV-01A-31D-A26M-08	43	40	3	34	6.976744e-02	0	coding only	34834024	4	33	1.148303e-07	9.473496e-07
TCGA-KK-A59V-01A-11D-A29Q-08	1152	1139	13	848	1.128472e-02	0	coding only	34834024	281	822	8.066826e-06	2.359762e-05
TCGA-KK-A59X-01A-11D-A29Q-08	68	67	1	53	1.470588e-02	0	coding only	34834024	12	50	3.444908e-07	1.435378e-06
TCGA-KK-A59Y-01A-11D-A26M-08	30	30	0	24	0	0	coding only	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-KK-A59Z-01A-12D-A26M-08	61	60	1	48	1.639344e-02	0	coding only	34834024	11	45	3.157832e-07	1.291840e-06
TCGA-KK-A5A1-01A-11D-A29Q-08	133	128	5	101	3.759398e-02	1	exome+100bp flanks	34834024	26	99	7.463967e-07	2.842049e-06
TCGA-KK-A6DY-01A-12D-A30X-08	44	40	4	32	9.090909e-02	0	coding only	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-KK-A6E0-01A-11D-A30X-08	41	41	0	26	0	0	coding only	34834024	15	24	4.306135e-07	6.889816e-07
TCGA-KK-A6E1-01A-11D-A30X-08	33	32	1	24	3.030303e-02	0	coding only	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-KK-A6E2-01A-11D-A30X-08	60	59	1	43	1.666667e-02	0	coding only	34834024	16	38	4.593210e-07	1.090887e-06
TCGA-KK-A6E3-01A-21D-A30E-08	59	56	3	42	5.084746e-02	0	coding only	34834024	13	42	3.731983e-07	1.205718e-06
TCGA-KK-A6E4-01A-11D-A30E-08	54	52	2	36	3.703704e-02	0	coding only	34834024	15	35	4.306135e-07	1.004765e-06
TCGA-KK-A6E5-01A-11D-A30X-08	32	30	2	22	6.250000e-02	0	coding only	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-KK-A6E6-01A-11D-A30X-08	56	53	3	37	5.357143e-02	0	coding only	34834024	16	32	4.593210e-07	9.186421e-07
TCGA-KK-A6E7-01A-11D-A31L-08	42	40	2	30	4.761905e-02	0	coding only	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-KK-A6E8-01A-11D-A31L-08	60	60	0	48	0	0	coding only	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-QU-A6IL-01A-11D-A31L-08	46	46	0	26	0	0	coding only	34834024	18	26	5.167362e-07	7.463967e-07
TCGA-QU-A6IM-01A-11D-A31L-08	81	78	3	64	3.703704e-02	0	coding only	34834024	14	60	4.019059e-07	1.722454e-06
TCGA-QU-A6IN-01A-11D-A31L-08	34	34	0	24	0	0	coding only	34834024	10	21	2.870756e-07	6.028589e-07
TCGA-QU-A6IO-01A-11D-A31L-08	51	49	2	34	3.921569e-02	0	coding only	34834024	14	30	4.019059e-07	8.612269e-07
TCGA-QU-A6IP-01A-11D-A31L-08	35	31	4	26	1.142857e-01	0	coding only	34834024	5	23	1.435378e-07	6.602740e-07