Clinical Features Time to Death AGE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 32 (10%) 274 0.029387 1 0.75574 1 0.67345 1 0.51688 1 0.85112 1 0.35507 1 0.18717 1 0.014907 1 1 1 0.25049 1 0.29835 1 1q gain 75 (25%) 231 0.29559 1 0.75693 1 0.96635 1 0.46286 1 0.8197 1 0.1307 1 0.1734 1 0.0091017 1 0.36826 1 0.67893 1 0.46019 1 2p gain 51 (17%) 255 0.42795 1 0.88543 1 0.72922 1 0.29664 1 0.64819 1 0.17042 1 0.53385 1 0.15414 1 0.60541 1 0.26387 1 0.27016 1 2q gain 45 (15%) 261 0.85068 1 0.86943 1 0.70497 1 0.6004 1 0.42458 1 0.68776 1 0.5089 1 0.75106 1 0.59915 1 0.31632 1 0.26792 1 3p gain 36 (12%) 270 0.27934 1 0.69724 1 0.92925 1 0.96395 1 0.89327 1 1 1 0.85605 1 0.86559 1 1 1 0.73535 1 0.085772 1 3q gain 59 (19%) 247 0.2215 1 0.14757 1 0.7291 1 0.53144 1 0.74939 1 0.21997 1 0.88216 1 0.99782 1 1 1 0.39737 1 0.11421 1 4p gain 10 (3%) 296 0.37233 1 0.62347 1 0.10111 1 0.12813 1 0.4522 1 0.7089 1 0.32549 1 0.95441 1 1 1 0.24184 1 0.44942 1 4q gain 7 (2%) 299 0.89587 1 0.70653 1 0.63208 1 0.79147 1 0.55087 1 0.18501 1 0.70853 1 0.013815 1 1 1 0.50591 1 0.53661 1 5p gain 69 (23%) 237 0.46421 1 0.24885 1 0.48726 1 0.56281 1 0.82831 1 0.94649 1 0.88867 1 0.031385 1 0.19245 1 0.45638 1 0.43349 1 5q gain 28 (9%) 278 0.74471 1 0.51161 1 0.49597 1 0.68147 1 0.60373 1 0.70735 1 1 1 0.054095 1 0.49276 1 0.51649 1 0.83637 1 6p gain 55 (18%) 251 0.49722 1 0.57698 1 0.36617 1 0.2835 1 0.85279 1 0.21487 1 0.36031 1 0.04719 1 0.021601 1 0.40712 1 0.030858 1 6q gain 46 (15%) 260 0.19302 1 0.71508 1 0.15722 1 0.54611 1 0.70654 1 0.40201 1 0.33173 1 0.083307 1 0.011204 1 0.39432 1 0.13565 1 7p gain 138 (45%) 168 0.0585 1 0.25632 1 0.7951 1 0.84528 1 0.76355 1 0.14664 1 0.10071 1 0.93044 1 0.70502 1 0.76345 1 0.30388 1 7q gain 118 (39%) 188 0.066526 1 0.33351 1 0.86614 1 0.98052 1 0.44936 1 0.023579 1 0.14939 1 0.91615 1 1 1 0.62487 1 0.20752 1 8p gain 127 (42%) 179 0.65213 1 0.048822 1 0.64294 1 0.108 1 0.8207 1 0.10575 1 0.23584 1 0.67714 1 0.45462 1 0.19947 1 0.79041 1 8q gain 168 (55%) 138 0.62892 1 0.020351 1 0.26507 1 0.042292 1 0.99332 1 0.19311 1 0.63943 1 0.44567 1 0.46367 1 0.3107 1 0.3708 1 9p gain 38 (12%) 268 0.68193 1 0.70948 1 0.28046 1 0.0695 1 0.16411 1 0.36982 1 1 1 0.098961 1 0.21126 1 0.72492 1 0.69427 1 9q gain 47 (15%) 259 0.90442 1 0.9808 1 0.35072 1 0.24708 1 0.40394 1 0.74905 1 0.51668 1 0.071243 1 0.2931 1 0.60301 1 0.077468 1 10p gain 75 (25%) 231 0.44209 1 0.92039 1 0.6483 1 0.48622 1 0.87555 1 0.81125 1 0.68463 1 0.44716 1 0.68131 1 0.62108 1 0.48446 1 10q gain 51 (17%) 255 0.70645 1 0.27456 1 0.25515 1 0.67871 1 0.65521 1 0.87246 1 0.53385 1 0.86373 1 0.33019 1 0.61392 1 0.38116 1 11p gain 32 (10%) 274 0.17926 1 0.48044 1 0.7547 1 0.11403 1 0.28694 1 0.35507 1 0.34706 1 0.76088 1 0.54221 1 0.59791 1 0.48489 1 11q gain 37 (12%) 269 0.74914 1 0.78833 1 0.88049 1 0.52585 1 0.050654 1 0.6939 1 0.21462 1 0.70221 1 0.59816 1 0.93303 1 0.74339 1 12p gain 59 (19%) 247 0.052918 1 0.17914 1 0.40253 1 0.021675 1 0.078398 1 0.50704 1 0.7686 1 0.081365 1 0.35315 1 0.060687 1 0.90497 1 12q gain 55 (18%) 251 0.23467 1 0.30063 1 0.44548 1 0.048857 1 0.021489 1 0.82213 1 0.45098 1 0.08845 1 1 1 0.30519 1 0.80457 1 13q gain 102 (33%) 204 0.14815 1 0.85068 1 0.82598 1 0.43509 1 0.87934 1 0.16658 1 1 1 0.20218 1 1 1 0.88628 1 0.81241 1 14q gain 16 (5%) 290 0.011728 1 0.080384 1 0.86473 1 0.49056 1 0.095444 1 0.41819 1 0.43308 1 0.22108 1 1 1 0.044697 1 0.18737 1 15q gain 25 (8%) 281 0.87424 1 0.83192 1 0.57263 1 0.90909 1 0.047762 1 0.39536 1 0.52479 1 0.94802 1 1 1 0.46922 1 0.99501 1 16p gain 42 (14%) 264 0.27852 1 0.21232 1 0.008609 1 0.41087 1 0.56235 1 0.00016741 0.145 0.61336 1 0.89421 1 0.056784 1 0.17748 1 0.18214 1 16q gain 32 (10%) 274 0.17432 1 0.43839 1 0.0019374 1 0.53588 1 0.72032 1 5.0078e-06 0.00435 0.85085 1 0.81425 1 0.15957 1 0.062674 1 0.13889 1 17p gain 19 (6%) 287 0.52201 1 0.1697 1 0.23318 1 0.8296 1 0.91174 1 0.0036205 1 1 1 0.07917 1 0.36449 1 0.020482 1 0.87408 1 17q gain 35 (11%) 271 0.5557 1 0.90177 1 0.76855 1 0.52861 1 0.83994 1 0.0034957 1 0.58457 1 0.7238 1 0.57653 1 0.062854 1 0.91504 1 18p gain 53 (17%) 253 0.0018074 1 0.018941 1 0.80283 1 0.60841 1 0.32645 1 0.54837 1 0.75774 1 0.027711 1 0.0020948 1 0.17048 1 0.20256 1 18q gain 40 (13%) 266 0.041429 1 0.04539 1 0.47064 1 0.26991 1 0.47507 1 0.29579 1 0.60594 1 0.0017773 1 0.049929 1 0.33904 1 0.48606 1 19p gain 39 (13%) 267 0.52196 1 0.36137 1 0.24492 1 0.099561 1 0.041575 1 0.060683 1 0.38173 1 0.028382 1 0.22015 1 0.042235 1 0.052605 1 19q gain 52 (17%) 254 0.66599 1 0.81732 1 0.45214 1 0.43731 1 0.022521 1 0.12659 1 0.43838 1 0.10888 1 0.098083 1 0.19663 1 0.016498 1 20p gain 165 (54%) 141 0.52699 1 0.80022 1 0.67856 1 0.17141 1 0.42207 1 0.4262 1 0.025816 1 0.18935 1 0.7073 1 0.5553 1 0.099577 1 20q gain 192 (63%) 114 0.28169 1 0.33778 1 0.47152 1 0.11654 1 0.40296 1 0.10919 1 0.015404 1 0.021459 1 0.71432 1 0.087029 1 0.22288 1 21q gain 19 (6%) 287 0.84502 1 0.93071 1 0.66771 1 0.50814 1 0.76546 1 0.85272 1 1 1 0.1498 1 0.36449 1 0.52418 1 0.94266 1 22q gain 24 (8%) 282 0.4038 1 0.82429 1 0.10564 1 0.29124 1 0.49504 1 1 1 1 1 0.6747 1 1 1 0.72169 1 0.99592 1 xq gain 39 (13%) 267 0.49324 1 0.43836 1 0.0021699 1 0.01015 1 0.072757 1 0.84329 1 0.053714 1 0.0059235 1 0.60131 1 0.3833 1 5.3045e-05 0.046 1p loss 40 (13%) 266 0.36586 1 0.9343 1 0.22335 1 0.63776 1 0.54265 1 0.080854 1 0.48789 1 0.49825 1 1 1 0.16291 1 0.37192 1 1q loss 19 (6%) 287 0.14093 1 0.7871 1 0.33403 1 0.44951 1 0.64802 1 0.064566 1 0.47439 1 0.87659 1 1 1 0.28037 1 0.95405 1 2p loss 16 (5%) 290 0.092578 1 0.76379 1 0.7601 1 0.95079 1 0.38811 1 0.19088 1 0.18987 1 0.039161 1 0.046229 1 0.15516 1 0.30947 1 2q loss 19 (6%) 287 0.43202 1 0.81713 1 0.92192 1 0.58619 1 0.51635 1 0.26272 1 1 1 0.01786 1 0.0637 1 0.14792 1 0.32044 1 3p loss 59 (19%) 247 0.70309 1 0.66783 1 0.9782 1 0.65803 1 0.091792 1 0.23494 1 0.88216 1 0.45169 1 1 1 0.13434 1 0.041685 1 3q loss 35 (11%) 271 0.84928 1 0.21255 1 0.92473 1 0.015697 1 0.62546 1 0.82602 1 1 1 0.5581 1 1 1 0.57377 1 0.18385 1 4p loss 112 (37%) 194 0.96085 1 0.31282 1 0.15881 1 0.017897 1 0.89386 1 0.23105 1 0.33322 1 0.435 1 0.26427 1 0.42154 1 0.25429 1 4q loss 112 (37%) 194 0.70364 1 0.13065 1 0.38655 1 0.10452 1 0.3462 1 0.53798 1 0.052836 1 0.45452 1 0.26427 1 0.52396 1 0.26978 1 5p loss 37 (12%) 269 0.22375 1 0.7069 1 0.060505 1 0.79257 1 0.61114 1 1 1 1 1 0.25012 1 1 1 1 1 0.79636 1 5q loss 65 (21%) 241 0.73625 1 0.46224 1 0.010877 1 0.65293 1 0.48612 1 0.19183 1 0.77488 1 0.079852 1 0.64286 1 0.46428 1 0.86466 1 6p loss 30 (10%) 276 0.65881 1 0.30295 1 0.61145 1 0.7038 1 0.63254 1 0.078952 1 0.32807 1 0.066672 1 1 1 0.88846 1 0.62692 1 6q loss 40 (13%) 266 0.3339 1 0.65871 1 0.60145 1 0.33822 1 0.88082 1 0.014717 1 0.22714 1 0.33838 1 0.60028 1 0.96964 1 0.76251 1 7p loss 10 (3%) 296 0.10443 1 0.26732 1 0.29012 1 0.10531 1 0.80436 1 0.48668 1 0.32549 1 0.46919 1 1 1 1 1 0.57881 1 7q loss 19 (6%) 287 0.026538 1 0.058448 1 0.34447 1 0.05692 1 0.43442 1 0.71417 1 0.3325 1 0.077666 1 1 1 1 1 0.31081 1 8p loss 51 (17%) 255 0.97344 1 0.2983 1 0.34457 1 0.53916 1 0.14417 1 0.46417 1 0.43241 1 0.075019 1 0.33019 1 0.27097 1 0.061723 1 8q loss 17 (6%) 289 0.74691 1 0.4074 1 0.89405 1 0.011226 1 0.67141 1 0.35781 1 1 1 0.48871 1 0.33249 1 0.18316 1 0.25389 1 9p loss 93 (30%) 213 0.59666 1 0.20249 1 0.16453 1 0.39001 1 0.48366 1 0.26691 1 0.52714 1 0.20692 1 0.2054 1 0.38626 1 0.91305 1 9q loss 65 (21%) 241 0.82055 1 0.71151 1 0.19211 1 0.24573 1 0.94526 1 0.015838 1 0.77488 1 0.92342 1 0.039112 1 0.30352 1 0.19252 1 10p loss 34 (11%) 272 0.22127 1 0.26825 1 0.016769 1 0.16556 1 0.1526 1 0.21464 1 1 1 0.19819 1 0.17643 1 0.20895 1 0.2794 1 10q loss 41 (13%) 265 0.22074 1 0.01062 1 0.40609 1 0.14875 1 0.64504 1 1 1 1 1 0.23817 1 0.23813 1 0.67342 1 0.61768 1 11p loss 44 (14%) 262 0.50316 1 0.98088 1 0.87344 1 0.092837 1 0.63328 1 0.23534 1 0.50706 1 0.0093287 1 1 1 0.14851 1 0.32536 1 11q loss 40 (13%) 266 0.061299 1 0.66465 1 0.21297 1 0.67446 1 0.25868 1 0.23077 1 0.38927 1 0.35139 1 1 1 0.2086 1 0.16322 1 12p loss 43 (14%) 263 0.23083 1 0.085709 1 0.33401 1 0.14067 1 0.10662 1 0.40887 1 0.5028 1 0.029673 1 1 1 0.5067 1 0.52693 1 12q loss 33 (11%) 273 0.038722 1 0.18001 1 0.91335 1 0.32088 1 0.28448 1 0.098503 1 0.70878 1 0.39644 1 0.5539 1 0.9589 1 0.69798 1 13q loss 28 (9%) 278 0.40989 1 0.41891 1 0.65778 1 0.90847 1 0.53118 1 0.070038 1 0.22952 1 0.82245 1 0.12724 1 0.058844 1 0.45822 1 14q loss 71 (23%) 235 0.97029 1 0.26817 1 0.071432 1 0.23183 1 0.32289 1 0.013499 1 1 1 0.90176 1 0.6652 1 0.16058 1 0.65433 1 15q loss 58 (19%) 248 0.69582 1 0.29032 1 0.61044 1 0.0051351 1 0.74751 1 0.2977 1 0.37098 1 0.0016751 1 0.026147 1 0.65516 1 0.17242 1 16p loss 62 (20%) 244 0.71547 1 0.0083723 1 0.50259 1 0.33507 1 0.168 1 0.52063 1 0.88459 1 0.12764 1 0.63281 1 0.64871 1 0.51851 1 16q loss 72 (24%) 234 0.39218 1 0.14595 1 0.17934 1 0.32026 1 0.71069 1 0.093397 1 0.33468 1 0.080148 1 0.36141 1 0.47707 1 0.95356 1 17p loss 106 (35%) 200 0.67339 1 0.77167 1 0.64502 1 0.12194 1 0.90594 1 0.81162 1 0.39212 1 0.01423 1 0.051213 1 0.1363 1 0.27335 1 17q loss 49 (16%) 257 0.51695 1 0.5706 1 0.42132 1 0.51188 1 0.17394 1 0.92945 1 0.15092 1 0.46841 1 0.31163 1 1 1 0.5041 1 18p loss 84 (27%) 222 0.10671 1 0.91126 1 0.33734 1 0.24129 1 0.94728 1 0.82824 1 0.35863 1 0.68649 1 0.19597 1 0.741 1 0.15051 1 18q loss 103 (34%) 203 0.43465 1 0.46563 1 0.29793 1 0.013984 1 0.9447 1 0.77533 1 0.3878 1 0.77752 1 1 1 0.83661 1 0.068348 1 19p loss 72 (24%) 234 0.066638 1 0.11583 1 0.90023 1 0.78178 1 0.88344 1 0.89973 1 0.78348 1 0.028342 1 0.36141 1 0.70745 1 0.2509 1 19q loss 55 (18%) 251 0.52418 1 0.02249 1 0.8694 1 0.53837 1 0.57954 1 0.88018 1 1 1 0.0085937 1 0.11266 1 0.74369 1 0.65905 1 20p loss 16 (5%) 290 0.046347 1 0.48685 1 0.23481 1 1 1 0.55121 1 0.0061782 1 0.065248 1 0.68533 1 0.046229 1 0.1966 1 0.96622 1 21q loss 109 (36%) 197 0.78464 1 0.0281 1 0.36149 1 0.016311 1 0.91235 1 0.58373 1 0.050621 1 0.97607 1 0.25189 1 0.97961 1 0.7183 1 22q loss 91 (30%) 215 0.15272 1 0.77178 1 0.51132 1 0.042547 1 0.69408 1 0.60651 1 0.44265 1 0.85692 1 0.026254 1 0.46401 1 0.1734 1 xq loss 34 (11%) 272 0.84185 1 0.83199 1 0.95481 1 0.20461 1 0.8051 1 0.82279 1 0.008246 1 0.75306 1 0.17643 1 0.0074138 1 0.40664 1