This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 40 focal events and 10 molecular subtypes across 331 patients, 226 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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4p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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8p cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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8q cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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9p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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18p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 40 focal events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 226 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
19q | 118 (36%) | 213 |
4.45e-18 (1.75e-15) |
2.42e-09 (8.5e-07) |
0.00105 (0.192) |
0.0213 (1.00) |
1.24e-10 (4.55e-08) |
1.22e-07 (3.96e-05) |
1.26e-06 (0.000386) |
1.32e-10 (4.82e-08) |
0.000462 (0.0934) |
6.52e-09 (2.27e-06) |
5p | 115 (35%) | 216 |
5.9e-21 (2.35e-18) |
9.25e-11 (3.4e-08) |
0.695 (1.00) |
0.701 (1.00) |
6.47e-12 (2.42e-09) |
1.16e-08 (3.98e-06) |
7.84e-08 (2.56e-05) |
9.49e-09 (3.27e-06) |
7e-06 (0.00197) |
1.86e-11 (6.91e-09) |
5q | 101 (31%) | 230 |
3.45e-17 (1.35e-14) |
3.53e-08 (1.18e-05) |
0.356 (1.00) |
0.901 (1.00) |
1.5e-09 (5.34e-07) |
1.56e-07 (5.06e-05) |
3.77e-06 (0.0011) |
3.54e-08 (1.18e-05) |
0.000122 (0.0291) |
2.89e-10 (1.05e-07) |
6p | 95 (29%) | 236 |
3.08e-16 (1.2e-13) |
2.93e-12 (1.1e-09) |
0.00779 (1.00) |
0.327 (1.00) |
1.54e-06 (0.000465) |
4.83e-07 (0.000154) |
1.77e-05 (0.00479) |
4.47e-08 (1.47e-05) |
6.96e-06 (0.00196) |
2.26e-10 (8.23e-08) |
9p | 145 (44%) | 186 |
3.67e-16 (1.42e-13) |
6.12e-07 (0.000194) |
0.000205 (0.0463) |
0.217 (1.00) |
3.14e-06 (0.000919) |
8.42e-05 (0.0208) |
0.000134 (0.0314) |
5.53e-06 (0.00159) |
0.109 (1.00) |
3.21e-08 (1.09e-05) |
16p | 115 (35%) | 216 |
3.55e-17 (1.39e-14) |
4.23e-08 (1.4e-05) |
0.349 (1.00) |
0.528 (1.00) |
1.51e-08 (5.16e-06) |
3.3e-05 (0.00857) |
3.78e-06 (0.0011) |
7.99e-06 (0.00223) |
0.000375 (0.0784) |
1.17e-06 (0.000359) |
17p | 136 (41%) | 195 |
3.66e-22 (1.46e-19) |
1.26e-09 (4.5e-07) |
0.356 (1.00) |
0.948 (1.00) |
3.23e-08 (1.09e-05) |
6.47e-07 (0.000204) |
1.73e-05 (0.00469) |
3.74e-07 (0.00012) |
0.00108 (0.198) |
1.44e-08 (4.94e-06) |
19p | 122 (37%) | 209 |
2.37e-21 (9.47e-19) |
8.26e-11 (3.05e-08) |
0.0017 (0.294) |
0.066 (1.00) |
1.87e-11 (6.92e-09) |
6.81e-09 (2.36e-06) |
1.42e-06 (0.000431) |
4.25e-11 (1.57e-08) |
0.000877 (0.167) |
1.13e-09 (4.06e-07) |
21q | 140 (42%) | 191 |
1.92e-15 (7.38e-13) |
3.41e-08 (1.15e-05) |
0.112 (1.00) |
0.512 (1.00) |
0.000367 (0.0775) |
2.14e-05 (0.00569) |
6.12e-05 (0.0154) |
1.5e-06 (0.000453) |
0.000977 (0.181) |
1.73e-06 (0.000518) |
1q | 100 (30%) | 231 |
2.13e-14 (8.15e-12) |
2.12e-06 (0.000627) |
0.0198 (1.00) |
0.0421 (1.00) |
1.1e-06 (0.00034) |
0.000117 (0.028) |
0.000143 (0.0334) |
0.00133 (0.234) |
0.00378 (0.59) |
0.000519 (0.104) |
4p | 134 (40%) | 197 |
4.46e-18 (1.75e-15) |
1.87e-05 (0.00504) |
0.241 (1.00) |
0.465 (1.00) |
0.000229 (0.0516) |
0.000244 (0.0539) |
5.75e-06 (0.00164) |
1.38e-06 (0.00042) |
0.00465 (0.702) |
2.95e-05 (0.00777) |
6q | 96 (29%) | 235 |
7.26e-13 (2.75e-10) |
4.29e-09 (1.5e-06) |
0.0919 (1.00) |
0.361 (1.00) |
1.27e-05 (0.00346) |
3.68e-05 (0.00942) |
0.0177 (1.00) |
0.000158 (0.0364) |
0.00112 (0.204) |
1.06e-05 (0.00292) |
10p | 118 (36%) | 213 |
9.98e-21 (3.96e-18) |
3.99e-09 (1.4e-06) |
0.226 (1.00) |
0.284 (1.00) |
4.89e-06 (0.00141) |
0.000173 (0.0395) |
0.000129 (0.0304) |
5.81e-06 (0.00165) |
0.0039 (0.6) |
4.58e-05 (0.0116) |
12p | 111 (34%) | 220 |
6.47e-13 (2.45e-10) |
4.06e-07 (0.00013) |
0.227 (1.00) |
0.233 (1.00) |
1.8e-06 (0.000537) |
0.00191 (0.322) |
0.000188 (0.0427) |
0.000325 (0.0695) |
0.00029 (0.0629) |
3.56e-05 (0.00919) |
15q | 93 (28%) | 238 |
1.17e-11 (4.37e-09) |
7.55e-08 (2.47e-05) |
0.00346 (0.544) |
0.265 (1.00) |
8.62e-07 (0.000271) |
9.85e-07 (0.000307) |
0.000711 (0.136) |
9.59e-07 (3e-04) |
0.00175 (0.297) |
2.46e-07 (7.95e-05) |
16q | 113 (34%) | 218 |
1.2e-14 (4.61e-12) |
4.06e-08 (1.35e-05) |
0.0251 (1.00) |
0.646 (1.00) |
7.07e-09 (2.45e-06) |
1.07e-05 (0.00294) |
7.1e-06 (0.00199) |
5.12e-05 (0.013) |
0.00704 (0.992) |
1.91e-05 (0.00512) |
20q | 209 (63%) | 122 |
3.87e-16 (1.5e-13) |
9.57e-10 (3.45e-07) |
0.044 (1.00) |
0.971 (1.00) |
1.02e-06 (0.000317) |
7.6e-05 (0.0188) |
2.26e-06 (0.000668) |
1.03e-09 (3.71e-07) |
0.0463 (1.00) |
2.37e-09 (8.33e-07) |
1p | 80 (24%) | 251 |
5.4e-14 (2.06e-11) |
0.000241 (0.0534) |
0.107 (1.00) |
0.269 (1.00) |
3.76e-05 (0.00958) |
0.0173 (1.00) |
0.000131 (0.0307) |
0.000929 (0.174) |
0.0422 (1.00) |
0.000446 (0.0911) |
2p | 74 (22%) | 257 |
1.91e-09 (6.75e-07) |
0.000168 (0.0385) |
0.284 (1.00) |
0.956 (1.00) |
0.00281 (0.452) |
0.0749 (1.00) |
3.34e-05 (0.00866) |
0.00127 (0.225) |
0.000455 (0.0924) |
3.07e-05 (0.00804) |
4q | 129 (39%) | 202 |
1.54e-18 (6.1e-16) |
2.6e-06 (0.000766) |
0.103 (1.00) |
0.316 (1.00) |
0.00379 (0.59) |
0.000499 (0.1) |
0.000244 (0.0539) |
1.54e-06 (0.000465) |
0.0293 (1.00) |
3.65e-05 (0.00938) |
10q | 99 (30%) | 232 |
8.71e-16 (3.36e-13) |
1.06e-06 (0.00033) |
0.0612 (1.00) |
0.391 (1.00) |
1.93e-06 (0.000573) |
8.98e-05 (0.0221) |
0.0017 (0.294) |
0.000624 (0.122) |
0.0968 (1.00) |
0.000149 (0.0345) |
14q | 100 (30%) | 231 |
1.29e-09 (4.59e-07) |
0.000623 (0.122) |
0.442 (1.00) |
0.23 (1.00) |
0.000537 (0.106) |
0.000368 (0.0775) |
1.99e-05 (0.00531) |
0.00516 (0.758) |
0.00315 (0.504) |
0.000269 (0.0587) |
18q | 159 (48%) | 172 |
5.55e-15 (2.13e-12) |
0.000561 (0.11) |
0.0862 (1.00) |
0.352 (1.00) |
0.000893 (0.169) |
0.00973 (1.00) |
4.42e-06 (0.00128) |
1.1e-05 (0.00301) |
0.00704 (0.992) |
0.000128 (0.0304) |
20p | 198 (60%) | 133 |
1.38e-16 (5.39e-14) |
4.09e-08 (1.35e-05) |
0.0583 (1.00) |
0.386 (1.00) |
0.000237 (0.0531) |
0.009 (1.00) |
3.77e-06 (0.0011) |
8.38e-06 (0.00233) |
0.0068 (0.966) |
6.81e-06 (0.00193) |
22q | 127 (38%) | 204 |
1.17e-19 (4.63e-17) |
7.26e-08 (2.38e-05) |
0.0508 (1.00) |
0.691 (1.00) |
5.52e-05 (0.0139) |
0.0123 (1.00) |
7.77e-07 (0.000245) |
1.03e-08 (3.56e-06) |
0.00484 (0.722) |
2.49e-07 (8.03e-05) |
11p | 82 (25%) | 249 |
1.98e-08 (6.73e-06) |
2.23e-05 (0.00588) |
0.0415 (1.00) |
0.959 (1.00) |
0.0166 (1.00) |
0.000327 (0.0696) |
0.00219 (0.363) |
0.000238 (0.0531) |
0.147 (1.00) |
0.000526 (0.105) |
13q | 141 (43%) | 190 |
1.78e-09 (6.31e-07) |
0.00118 (0.212) |
0.803 (1.00) |
0.12 (1.00) |
0.0449 (1.00) |
0.529 (1.00) |
0.000363 (0.0769) |
0.000902 (0.17) |
0.00845 (1.00) |
0.0001 (0.0243) |
18p | 154 (47%) | 177 |
1.19e-12 (4.48e-10) |
0.000412 (0.0845) |
0.0706 (1.00) |
0.0884 (1.00) |
0.0042 (0.638) |
0.0387 (1.00) |
2.15e-05 (0.00571) |
3.19e-05 (0.00831) |
0.0101 (1.00) |
0.000113 (0.0272) |
xq | 83 (25%) | 248 |
4.01e-10 (1.46e-07) |
0.000108 (0.026) |
0.341 (1.00) |
0.527 (1.00) |
0.000877 (0.167) |
0.0458 (1.00) |
0.00026 (0.057) |
0.279 (1.00) |
0.00124 (0.221) |
0.0582 (1.00) |
2q | 69 (21%) | 262 |
2.73e-08 (9.27e-06) |
0.0052 (0.759) |
0.42 (1.00) |
0.889 (1.00) |
0.00113 (0.205) |
0.0307 (1.00) |
0.00136 (0.238) |
0.00335 (0.533) |
0.00264 (0.43) |
0.000692 (0.134) |
9q | 124 (37%) | 207 |
8.6e-10 (3.11e-07) |
7.42e-05 (0.0185) |
0.0191 (1.00) |
0.621 (1.00) |
0.000377 (0.0784) |
0.00408 (0.624) |
0.00497 (0.736) |
0.0297 (1.00) |
0.0563 (1.00) |
0.00065 (0.126) |
3p | 101 (31%) | 230 |
3.44e-08 (1.15e-05) |
1.08e-05 (0.00296) |
0.217 (1.00) |
0.122 (1.00) |
0.0545 (1.00) |
0.0333 (1.00) |
0.00465 (0.702) |
0.0109 (1.00) |
0.0683 (1.00) |
0.000105 (0.0254) |
7p | 156 (47%) | 175 |
6.53e-14 (2.48e-11) |
1.53e-05 (0.00416) |
0.533 (1.00) |
0.973 (1.00) |
0.0173 (1.00) |
0.0336 (1.00) |
0.077 (1.00) |
0.0137 (1.00) |
0.00948 (1.00) |
6.98e-05 (0.0174) |
17q | 94 (28%) | 237 |
5.05e-10 (1.83e-07) |
0.0119 (1.00) |
0.538 (1.00) |
0.97 (1.00) |
0.00196 (0.329) |
0.000151 (0.0348) |
0.00121 (0.217) |
0.00255 (0.419) |
0.101 (1.00) |
0.00584 (0.841) |
3q | 100 (30%) | 231 |
1.15e-06 (0.000354) |
9.63e-05 (0.0235) |
0.273 (1.00) |
0.846 (1.00) |
0.283 (1.00) |
0.276 (1.00) |
0.012 (1.00) |
0.0241 (1.00) |
0.0269 (1.00) |
0.00166 (0.289) |
7q | 145 (44%) | 186 |
1.88e-12 (7.08e-10) |
9.58e-05 (0.0235) |
0.71 (1.00) |
0.805 (1.00) |
0.378 (1.00) |
0.125 (1.00) |
0.406 (1.00) |
0.183 (1.00) |
0.14 (1.00) |
0.00841 (1.00) |
8p | 197 (60%) | 134 |
0.000313 (0.0672) |
0.0199 (1.00) |
0.242 (1.00) |
0.473 (1.00) |
0.0412 (1.00) |
0.143 (1.00) |
0.00238 (0.393) |
0.0189 (1.00) |
6.7e-06 (0.0019) |
0.13 (1.00) |
8q | 203 (61%) | 128 |
0.000405 (0.0834) |
0.00172 (0.294) |
0.718 (1.00) |
0.169 (1.00) |
0.0167 (1.00) |
0.133 (1.00) |
0.0111 (1.00) |
0.0152 (1.00) |
0.000398 (0.0824) |
0.0448 (1.00) |
11q | 86 (26%) | 245 |
4.13e-07 (0.000132) |
0.000941 (0.175) |
0.849 (1.00) |
0.793 (1.00) |
0.279 (1.00) |
0.00572 (0.83) |
0.00276 (0.447) |
0.00217 (0.362) |
0.0275 (1.00) |
0.00345 (0.544) |
12q | 92 (28%) | 239 |
1.6e-06 (0.000481) |
0.000302 (0.0652) |
0.196 (1.00) |
0.276 (1.00) |
0.0223 (1.00) |
0.18 (1.00) |
0.215 (1.00) |
0.00654 (0.935) |
0.053 (1.00) |
0.0206 (1.00) |
P value = 5.4e-14 (Chi-square test), Q value = 2.1e-11
Table S1. Gene #1: '1p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
1P MUTATED | 6 | 9 | 21 | 2 | 40 | 2 |
1P WILD-TYPE | 145 | 18 | 34 | 11 | 42 | 1 |
Figure S1. Get High-res Image Gene #1: '1p' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 0.000241 (Fisher's exact test), Q value = 0.053
Table S2. Gene #1: '1p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
1P MUTATED | 3 | 17 | 10 | 31 |
1P WILD-TYPE | 34 | 63 | 55 | 45 |
Figure S2. Get High-res Image Gene #1: '1p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 3.76e-05 (Chi-square test), Q value = 0.0096
Table S3. Gene #1: '1p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
1P MUTATED | 8 | 5 | 12 | 8 | 26 |
1P WILD-TYPE | 57 | 57 | 34 | 29 | 36 |
Figure S3. Get High-res Image Gene #1: '1p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D1V5.png)
P value = 0.000131 (Fisher's exact test), Q value = 0.031
Table S4. Gene #1: '1p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
1P MUTATED | 17 | 16 | 43 |
1P WILD-TYPE | 88 | 85 | 72 |
Figure S4. Get High-res Image Gene #1: '1p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D1V7.png)
P value = 0.000929 (Fisher's exact test), Q value = 0.17
Table S5. Gene #1: '1p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
1P MUTATED | 19 | 32 | 25 |
1P WILD-TYPE | 83 | 49 | 113 |
Figure S5. Get High-res Image Gene #1: '1p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 0.000446 (Fisher's exact test), Q value = 0.091
Table S6. Gene #1: '1p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
1P MUTATED | 27 | 26 | 12 |
1P WILD-TYPE | 37 | 103 | 69 |
Figure S6. Get High-res Image Gene #1: '1p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V10.png)
P value = 2.13e-14 (Chi-square test), Q value = 8.1e-12
Table S7. Gene #2: '1q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
1Q MUTATED | 11 | 12 | 23 | 6 | 46 | 2 |
1Q WILD-TYPE | 140 | 15 | 32 | 7 | 36 | 1 |
Figure S7. Get High-res Image Gene #2: '1q' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 2.12e-06 (Fisher's exact test), Q value = 0.00063
Table S8. Gene #2: '1q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
1Q MUTATED | 6 | 25 | 10 | 41 |
1Q WILD-TYPE | 31 | 55 | 55 | 35 |
Figure S8. Get High-res Image Gene #2: '1q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 1.1e-06 (Chi-square test), Q value = 0.00034
Table S9. Gene #2: '1q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
1Q MUTATED | 14 | 9 | 12 | 10 | 36 |
1Q WILD-TYPE | 51 | 53 | 34 | 27 | 26 |
Figure S9. Get High-res Image Gene #2: '1q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D2V5.png)
P value = 0.000117 (Fisher's exact test), Q value = 0.028
Table S10. Gene #2: '1q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
1Q MUTATED | 32 | 35 | 14 |
1Q WILD-TYPE | 37 | 78 | 76 |
Figure S10. Get High-res Image Gene #2: '1q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 0.000143 (Fisher's exact test), Q value = 0.033
Table S11. Gene #2: '1q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
1Q MUTATED | 23 | 23 | 52 |
1Q WILD-TYPE | 82 | 78 | 63 |
Figure S11. Get High-res Image Gene #2: '1q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D2V7.png)
P value = 0.00133 (Fisher's exact test), Q value = 0.23
Table S12. Gene #2: '1q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
1Q MUTATED | 24 | 38 | 36 |
1Q WILD-TYPE | 78 | 43 | 102 |
Figure S12. Get High-res Image Gene #2: '1q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.000519 (Fisher's exact test), Q value = 0.1
Table S13. Gene #2: '1q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
1Q MUTATED | 32 | 38 | 16 |
1Q WILD-TYPE | 32 | 91 | 65 |
Figure S13. Get High-res Image Gene #2: '1q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V10.png)
P value = 1.91e-09 (Chi-square test), Q value = 6.8e-07
Table S14. Gene #3: '2p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
2P MUTATED | 10 | 10 | 19 | 1 | 34 | 0 |
2P WILD-TYPE | 141 | 17 | 36 | 12 | 48 | 3 |
Figure S14. Get High-res Image Gene #3: '2p' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 0.000168 (Fisher's exact test), Q value = 0.038
Table S15. Gene #3: '2p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
2P MUTATED | 5 | 17 | 7 | 31 |
2P WILD-TYPE | 32 | 63 | 58 | 45 |
Figure S15. Get High-res Image Gene #3: '2p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 3.34e-05 (Fisher's exact test), Q value = 0.0087
Table S16. Gene #3: '2p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
2P MUTATED | 15 | 14 | 42 |
2P WILD-TYPE | 90 | 87 | 73 |
Figure S16. Get High-res Image Gene #3: '2p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D3V7.png)
P value = 0.00127 (Fisher's exact test), Q value = 0.23
Table S17. Gene #3: '2p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
2P MUTATED | 19 | 30 | 22 |
2P WILD-TYPE | 83 | 51 | 116 |
Figure S17. Get High-res Image Gene #3: '2p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.000455 (Fisher's exact test), Q value = 0.092
Table S18. Gene #3: '2p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
2P MUTATED | 11 | 44 | 9 |
2P WILD-TYPE | 53 | 87 | 70 |
Figure S18. Get High-res Image Gene #3: '2p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D3V9.png)
P value = 3.07e-05 (Fisher's exact test), Q value = 0.008
Table S19. Gene #3: '2p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
2P MUTATED | 27 | 29 | 8 |
2P WILD-TYPE | 37 | 100 | 73 |
Figure S19. Get High-res Image Gene #3: '2p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D3V10.png)
P value = 2.73e-08 (Chi-square test), Q value = 9.3e-06
Table S20. Gene #4: '2q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
2Q MUTATED | 10 | 10 | 16 | 1 | 32 | 0 |
2Q WILD-TYPE | 141 | 17 | 39 | 12 | 50 | 3 |
Figure S20. Get High-res Image Gene #4: '2q' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 0.00113 (Chi-square test), Q value = 0.21
Table S21. Gene #4: '2q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
2Q MUTATED | 10 | 7 | 9 | 5 | 24 |
2Q WILD-TYPE | 55 | 55 | 37 | 32 | 38 |
Figure S21. Get High-res Image Gene #4: '2q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D4V5.png)
P value = 0.00136 (Fisher's exact test), Q value = 0.24
Table S22. Gene #4: '2q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
2Q MUTATED | 15 | 15 | 37 |
2Q WILD-TYPE | 90 | 86 | 78 |
Figure S22. Get High-res Image Gene #4: '2q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D4V7.png)
P value = 0.000692 (Fisher's exact test), Q value = 0.13
Table S23. Gene #4: '2q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
2Q MUTATED | 24 | 26 | 9 |
2Q WILD-TYPE | 40 | 103 | 72 |
Figure S23. Get High-res Image Gene #4: '2q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D4V10.png)
P value = 3.44e-08 (Chi-square test), Q value = 1.2e-05
Table S24. Gene #5: '3p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
3P MUTATED | 19 | 11 | 26 | 5 | 39 | 1 |
3P WILD-TYPE | 132 | 16 | 29 | 8 | 43 | 2 |
Figure S24. Get High-res Image Gene #5: '3p' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 1.08e-05 (Fisher's exact test), Q value = 0.003
Table S25. Gene #5: '3p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
3P MUTATED | 8 | 27 | 8 | 38 |
3P WILD-TYPE | 29 | 53 | 57 | 38 |
Figure S25. Get High-res Image Gene #5: '3p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D5V2.png)
P value = 0.000105 (Fisher's exact test), Q value = 0.025
Table S26. Gene #5: '3p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
3P MUTATED | 34 | 35 | 17 |
3P WILD-TYPE | 30 | 94 | 64 |
Figure S26. Get High-res Image Gene #5: '3p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V10.png)
P value = 1.15e-06 (Chi-square test), Q value = 0.00035
Table S27. Gene #6: '3q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
3Q MUTATED | 21 | 13 | 24 | 5 | 36 | 1 |
3Q WILD-TYPE | 130 | 14 | 31 | 8 | 46 | 2 |
Figure S27. Get High-res Image Gene #6: '3q' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 9.63e-05 (Fisher's exact test), Q value = 0.023
Table S28. Gene #6: '3q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
3Q MUTATED | 11 | 23 | 8 | 36 |
3Q WILD-TYPE | 26 | 57 | 57 | 40 |
Figure S28. Get High-res Image Gene #6: '3q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 4.46e-18 (Chi-square test), Q value = 1.8e-15
Table S29. Gene #7: '4p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
4P MUTATED | 23 | 14 | 40 | 2 | 52 | 3 |
4P WILD-TYPE | 128 | 13 | 15 | 11 | 30 | 0 |
Figure S29. Get High-res Image Gene #7: '4p' versus Molecular Subtype #1: 'CN_CNMF'
![](D7V1.png)
P value = 1.87e-05 (Fisher's exact test), Q value = 0.005
Table S30. Gene #7: '4p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
4P MUTATED | 6 | 27 | 22 | 46 |
4P WILD-TYPE | 31 | 53 | 43 | 30 |
Figure S30. Get High-res Image Gene #7: '4p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D7V2.png)
P value = 0.000229 (Chi-square test), Q value = 0.052
Table S31. Gene #7: '4p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
4P MUTATED | 13 | 22 | 17 | 13 | 37 |
4P WILD-TYPE | 52 | 40 | 29 | 24 | 25 |
Figure S31. Get High-res Image Gene #7: '4p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D7V5.png)
P value = 0.000244 (Fisher's exact test), Q value = 0.054
Table S32. Gene #7: '4p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
4P MUTATED | 40 | 32 | 30 |
4P WILD-TYPE | 29 | 81 | 60 |
Figure S32. Get High-res Image Gene #7: '4p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D7V6.png)
P value = 5.75e-06 (Fisher's exact test), Q value = 0.0016
Table S33. Gene #7: '4p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
4P MUTATED | 27 | 36 | 66 |
4P WILD-TYPE | 78 | 65 | 49 |
Figure S33. Get High-res Image Gene #7: '4p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D7V7.png)
P value = 1.38e-06 (Fisher's exact test), Q value = 0.00042
Table S34. Gene #7: '4p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
4P MUTATED | 37 | 52 | 40 |
4P WILD-TYPE | 65 | 29 | 98 |
Figure S34. Get High-res Image Gene #7: '4p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 2.95e-05 (Fisher's exact test), Q value = 0.0078
Table S35. Gene #7: '4p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
4P MUTATED | 41 | 39 | 29 |
4P WILD-TYPE | 23 | 90 | 52 |
Figure S35. Get High-res Image Gene #7: '4p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V10.png)
P value = 1.54e-18 (Chi-square test), Q value = 6.1e-16
Table S36. Gene #8: '4q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
4Q MUTATED | 22 | 12 | 43 | 2 | 47 | 3 |
4Q WILD-TYPE | 129 | 15 | 12 | 11 | 35 | 0 |
Figure S36. Get High-res Image Gene #8: '4q' versus Molecular Subtype #1: 'CN_CNMF'
![](D8V1.png)
P value = 2.6e-06 (Fisher's exact test), Q value = 0.00077
Table S37. Gene #8: '4q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
4Q MUTATED | 5 | 29 | 21 | 47 |
4Q WILD-TYPE | 32 | 51 | 44 | 29 |
Figure S37. Get High-res Image Gene #8: '4q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D8V2.png)
P value = 0.000499 (Fisher's exact test), Q value = 0.1
Table S38. Gene #8: '4q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
4Q MUTATED | 38 | 30 | 30 |
4Q WILD-TYPE | 31 | 83 | 60 |
Figure S38. Get High-res Image Gene #8: '4q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D8V6.png)
P value = 0.000244 (Fisher's exact test), Q value = 0.054
Table S39. Gene #8: '4q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
4Q MUTATED | 28 | 36 | 61 |
4Q WILD-TYPE | 77 | 65 | 54 |
Figure S39. Get High-res Image Gene #8: '4q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D8V7.png)
P value = 1.54e-06 (Fisher's exact test), Q value = 0.00047
Table S40. Gene #8: '4q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
4Q MUTATED | 35 | 51 | 39 |
4Q WILD-TYPE | 67 | 30 | 99 |
Figure S40. Get High-res Image Gene #8: '4q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D8V8.png)
P value = 3.65e-05 (Fisher's exact test), Q value = 0.0094
Table S41. Gene #8: '4q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
4Q MUTATED | 41 | 40 | 28 |
4Q WILD-TYPE | 23 | 89 | 53 |
Figure S41. Get High-res Image Gene #8: '4q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D8V10.png)
P value = 5.9e-21 (Chi-square test), Q value = 2.3e-18
Table S42. Gene #9: '5p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
5P MUTATED | 16 | 8 | 23 | 4 | 63 | 1 |
5P WILD-TYPE | 135 | 19 | 32 | 9 | 19 | 2 |
Figure S42. Get High-res Image Gene #9: '5p' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 9.25e-11 (Fisher's exact test), Q value = 3.4e-08
Table S43. Gene #9: '5p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
5P MUTATED | 7 | 27 | 6 | 47 |
5P WILD-TYPE | 30 | 53 | 59 | 29 |
Figure S43. Get High-res Image Gene #9: '5p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 6.47e-12 (Chi-square test), Q value = 2.4e-09
Table S44. Gene #9: '5p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
5P MUTATED | 16 | 7 | 10 | 13 | 44 |
5P WILD-TYPE | 49 | 55 | 36 | 24 | 18 |
Figure S44. Get High-res Image Gene #9: '5p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 1.16e-08 (Fisher's exact test), Q value = 4e-06
Table S45. Gene #9: '5p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
5P MUTATED | 42 | 34 | 14 |
5P WILD-TYPE | 27 | 79 | 76 |
Figure S45. Get High-res Image Gene #9: '5p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D9V6.png)
P value = 7.84e-08 (Fisher's exact test), Q value = 2.6e-05
Table S46. Gene #9: '5p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
5P MUTATED | 31 | 19 | 63 |
5P WILD-TYPE | 74 | 82 | 52 |
Figure S46. Get High-res Image Gene #9: '5p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D9V7.png)
P value = 9.49e-09 (Fisher's exact test), Q value = 3.3e-06
Table S47. Gene #9: '5p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
5P MUTATED | 22 | 51 | 40 |
5P WILD-TYPE | 80 | 30 | 98 |
Figure S47. Get High-res Image Gene #9: '5p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 7e-06 (Fisher's exact test), Q value = 0.002
Table S48. Gene #9: '5p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
5P MUTATED | 21 | 62 | 12 |
5P WILD-TYPE | 43 | 69 | 67 |
Figure S48. Get High-res Image Gene #9: '5p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D9V9.png)
P value = 1.86e-11 (Fisher's exact test), Q value = 6.9e-09
Table S49. Gene #9: '5p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
5P MUTATED | 45 | 37 | 13 |
5P WILD-TYPE | 19 | 92 | 68 |
Figure S49. Get High-res Image Gene #9: '5p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D9V10.png)
P value = 3.45e-17 (Chi-square test), Q value = 1.4e-14
Table S50. Gene #10: '5q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
5Q MUTATED | 11 | 8 | 24 | 4 | 52 | 2 |
5Q WILD-TYPE | 140 | 19 | 31 | 9 | 30 | 1 |
Figure S50. Get High-res Image Gene #10: '5q' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 3.53e-08 (Fisher's exact test), Q value = 1.2e-05
Table S51. Gene #10: '5q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
5Q MUTATED | 4 | 27 | 8 | 41 |
5Q WILD-TYPE | 33 | 53 | 57 | 35 |
Figure S51. Get High-res Image Gene #10: '5q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 1.5e-09 (Chi-square test), Q value = 5.3e-07
Table S52. Gene #10: '5q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
5Q MUTATED | 13 | 7 | 8 | 11 | 38 |
5Q WILD-TYPE | 52 | 55 | 38 | 26 | 24 |
Figure S52. Get High-res Image Gene #10: '5q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 1.56e-07 (Fisher's exact test), Q value = 5.1e-05
Table S53. Gene #10: '5q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
5Q MUTATED | 37 | 28 | 12 |
5Q WILD-TYPE | 32 | 85 | 78 |
Figure S53. Get High-res Image Gene #10: '5q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D10V6.png)
P value = 3.77e-06 (Fisher's exact test), Q value = 0.0011
Table S54. Gene #10: '5q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
5Q MUTATED | 26 | 18 | 55 |
5Q WILD-TYPE | 79 | 83 | 60 |
Figure S54. Get High-res Image Gene #10: '5q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D10V7.png)
P value = 3.54e-08 (Fisher's exact test), Q value = 1.2e-05
Table S55. Gene #10: '5q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
5Q MUTATED | 18 | 46 | 35 |
5Q WILD-TYPE | 84 | 35 | 103 |
Figure S55. Get High-res Image Gene #10: '5q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D10V8.png)
P value = 0.000122 (Fisher's exact test), Q value = 0.029
Table S56. Gene #10: '5q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
5Q MUTATED | 17 | 57 | 13 |
5Q WILD-TYPE | 47 | 74 | 66 |
Figure S56. Get High-res Image Gene #10: '5q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D10V9.png)
P value = 2.89e-10 (Fisher's exact test), Q value = 1.1e-07
Table S57. Gene #10: '5q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
5Q MUTATED | 42 | 32 | 13 |
5Q WILD-TYPE | 22 | 97 | 68 |
Figure S57. Get High-res Image Gene #10: '5q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D10V10.png)
P value = 3.08e-16 (Chi-square test), Q value = 1.2e-13
Table S58. Gene #11: '6p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
6P MUTATED | 10 | 8 | 26 | 2 | 48 | 1 |
6P WILD-TYPE | 141 | 19 | 29 | 11 | 34 | 2 |
Figure S58. Get High-res Image Gene #11: '6p' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 2.93e-12 (Fisher's exact test), Q value = 1.1e-09
Table S59. Gene #11: '6p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
6P MUTATED | 1 | 19 | 6 | 43 |
6P WILD-TYPE | 36 | 61 | 59 | 33 |
Figure S59. Get High-res Image Gene #11: '6p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 1.54e-06 (Chi-square test), Q value = 0.00047
Table S60. Gene #11: '6p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
6P MUTATED | 12 | 7 | 14 | 8 | 33 |
6P WILD-TYPE | 53 | 55 | 32 | 29 | 29 |
Figure S60. Get High-res Image Gene #11: '6p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D11V5.png)
P value = 4.83e-07 (Fisher's exact test), Q value = 0.00015
Table S61. Gene #11: '6p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
6P MUTATED | 35 | 28 | 11 |
6P WILD-TYPE | 34 | 85 | 79 |
Figure S61. Get High-res Image Gene #11: '6p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D11V6.png)
P value = 1.77e-05 (Fisher's exact test), Q value = 0.0048
Table S62. Gene #11: '6p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
6P MUTATED | 24 | 17 | 51 |
6P WILD-TYPE | 81 | 84 | 64 |
Figure S62. Get High-res Image Gene #11: '6p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D11V7.png)
P value = 4.47e-08 (Fisher's exact test), Q value = 1.5e-05
Table S63. Gene #11: '6p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
6P MUTATED | 17 | 44 | 31 |
6P WILD-TYPE | 85 | 37 | 107 |
Figure S63. Get High-res Image Gene #11: '6p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 6.96e-06 (Fisher's exact test), Q value = 0.002
Table S64. Gene #11: '6p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
6P MUTATED | 12 | 54 | 10 |
6P WILD-TYPE | 52 | 77 | 69 |
Figure S64. Get High-res Image Gene #11: '6p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D11V9.png)
P value = 2.26e-10 (Fisher's exact test), Q value = 8.2e-08
Table S65. Gene #11: '6p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
6P MUTATED | 38 | 30 | 8 |
6P WILD-TYPE | 26 | 99 | 73 |
Figure S65. Get High-res Image Gene #11: '6p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V10.png)
P value = 7.26e-13 (Chi-square test), Q value = 2.7e-10
Table S66. Gene #12: '6q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
6Q MUTATED | 15 | 6 | 27 | 2 | 45 | 1 |
6Q WILD-TYPE | 136 | 21 | 28 | 11 | 37 | 2 |
Figure S66. Get High-res Image Gene #12: '6q' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 4.29e-09 (Fisher's exact test), Q value = 1.5e-06
Table S67. Gene #12: '6q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
6Q MUTATED | 2 | 18 | 8 | 40 |
6Q WILD-TYPE | 35 | 62 | 57 | 36 |
Figure S67. Get High-res Image Gene #12: '6q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D12V2.png)
P value = 1.27e-05 (Chi-square test), Q value = 0.0035
Table S68. Gene #12: '6q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
6Q MUTATED | 11 | 8 | 17 | 9 | 31 |
6Q WILD-TYPE | 54 | 54 | 29 | 28 | 31 |
Figure S68. Get High-res Image Gene #12: '6q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D12V5.png)
P value = 3.68e-05 (Fisher's exact test), Q value = 0.0094
Table S69. Gene #12: '6q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
6Q MUTATED | 34 | 26 | 16 |
6Q WILD-TYPE | 35 | 87 | 74 |
Figure S69. Get High-res Image Gene #12: '6q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D12V6.png)
P value = 0.000158 (Fisher's exact test), Q value = 0.036
Table S70. Gene #12: '6q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
6Q MUTATED | 20 | 38 | 34 |
6Q WILD-TYPE | 82 | 43 | 104 |
Figure S70. Get High-res Image Gene #12: '6q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.2
Table S71. Gene #12: '6q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
6Q MUTATED | 11 | 49 | 14 |
6Q WILD-TYPE | 53 | 82 | 65 |
Figure S71. Get High-res Image Gene #12: '6q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D12V9.png)
P value = 1.06e-05 (Fisher's exact test), Q value = 0.0029
Table S72. Gene #12: '6q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
6Q MUTATED | 32 | 30 | 12 |
6Q WILD-TYPE | 32 | 99 | 69 |
Figure S72. Get High-res Image Gene #12: '6q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V10.png)
P value = 6.53e-14 (Chi-square test), Q value = 2.5e-11
Table S73. Gene #13: '7p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
7P MUTATED | 37 | 26 | 34 | 6 | 52 | 1 |
7P WILD-TYPE | 114 | 1 | 21 | 7 | 30 | 2 |
Figure S73. Get High-res Image Gene #13: '7p' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 1.53e-05 (Fisher's exact test), Q value = 0.0042
Table S74. Gene #13: '7p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
7P MUTATED | 18 | 43 | 15 | 48 |
7P WILD-TYPE | 19 | 37 | 50 | 28 |
Figure S74. Get High-res Image Gene #13: '7p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 6.98e-05 (Fisher's exact test), Q value = 0.017
Table S75. Gene #13: '7p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
7P MUTATED | 45 | 55 | 29 |
7P WILD-TYPE | 19 | 74 | 52 |
Figure S75. Get High-res Image Gene #13: '7p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 1.88e-12 (Chi-square test), Q value = 7.1e-10
Table S76. Gene #14: '7q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
7Q MUTATED | 36 | 26 | 34 | 6 | 42 | 1 |
7Q WILD-TYPE | 115 | 1 | 21 | 7 | 40 | 2 |
Figure S76. Get High-res Image Gene #14: '7q' versus Molecular Subtype #1: 'CN_CNMF'
![](D14V1.png)
P value = 9.58e-05 (Fisher's exact test), Q value = 0.023
Table S77. Gene #14: '7q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
7Q MUTATED | 18 | 39 | 13 | 42 |
7Q WILD-TYPE | 19 | 41 | 52 | 34 |
Figure S77. Get High-res Image Gene #14: '7q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 0.000313 (Chi-square test), Q value = 0.067
Table S78. Gene #15: '8p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
8P MUTATED | 72 | 21 | 35 | 13 | 54 | 2 |
8P WILD-TYPE | 79 | 6 | 20 | 0 | 28 | 1 |
Figure S78. Get High-res Image Gene #15: '8p' versus Molecular Subtype #1: 'CN_CNMF'
![](D15V1.png)
P value = 6.7e-06 (Fisher's exact test), Q value = 0.0019
Table S79. Gene #15: '8p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
8P MUTATED | 37 | 93 | 29 |
8P WILD-TYPE | 27 | 38 | 50 |
Figure S79. Get High-res Image Gene #15: '8p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D15V9.png)
P value = 0.000405 (Chi-square test), Q value = 0.083
Table S80. Gene #16: '8q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
8Q MUTATED | 77 | 21 | 31 | 13 | 59 | 2 |
8Q WILD-TYPE | 74 | 6 | 24 | 0 | 23 | 1 |
Figure S80. Get High-res Image Gene #16: '8q' versus Molecular Subtype #1: 'CN_CNMF'
![](D16V1.png)
P value = 0.000398 (Fisher's exact test), Q value = 0.082
Table S81. Gene #16: '8q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
8Q MUTATED | 39 | 91 | 33 |
8Q WILD-TYPE | 25 | 40 | 46 |
Figure S81. Get High-res Image Gene #16: '8q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D16V9.png)
P value = 3.67e-16 (Chi-square test), Q value = 1.4e-13
Table S82. Gene #17: '9p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
9P MUTATED | 29 | 12 | 42 | 7 | 55 | 0 |
9P WILD-TYPE | 122 | 15 | 13 | 6 | 27 | 3 |
Figure S82. Get High-res Image Gene #17: '9p' versus Molecular Subtype #1: 'CN_CNMF'
![](D17V1.png)
P value = 6.12e-07 (Fisher's exact test), Q value = 0.00019
Table S83. Gene #17: '9p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
9P MUTATED | 6 | 34 | 22 | 51 |
9P WILD-TYPE | 31 | 46 | 43 | 25 |
Figure S83. Get High-res Image Gene #17: '9p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D17V2.png)
P value = 0.000205 (Fisher's exact test), Q value = 0.046
Table S84. Gene #17: '9p' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 90 | 91 |
9P MUTATED | 21 | 41 | 51 |
9P WILD-TYPE | 61 | 49 | 40 |
Figure S84. Get High-res Image Gene #17: '9p' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D17V3.png)
P value = 3.14e-06 (Chi-square test), Q value = 0.00092
Table S85. Gene #17: '9p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
9P MUTATED | 17 | 18 | 23 | 16 | 43 |
9P WILD-TYPE | 48 | 44 | 23 | 21 | 19 |
Figure S85. Get High-res Image Gene #17: '9p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D17V5.png)
P value = 8.42e-05 (Fisher's exact test), Q value = 0.021
Table S86. Gene #17: '9p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
9P MUTATED | 45 | 42 | 30 |
9P WILD-TYPE | 24 | 71 | 60 |
Figure S86. Get High-res Image Gene #17: '9p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D17V6.png)
P value = 0.000134 (Fisher's exact test), Q value = 0.031
Table S87. Gene #17: '9p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
9P MUTATED | 32 | 41 | 67 |
9P WILD-TYPE | 73 | 60 | 48 |
Figure S87. Get High-res Image Gene #17: '9p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D17V7.png)
P value = 5.53e-06 (Fisher's exact test), Q value = 0.0016
Table S88. Gene #17: '9p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
9P MUTATED | 40 | 54 | 46 |
9P WILD-TYPE | 62 | 27 | 92 |
Figure S88. Get High-res Image Gene #17: '9p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D17V8.png)
P value = 3.21e-08 (Fisher's exact test), Q value = 1.1e-05
Table S89. Gene #17: '9p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
9P MUTATED | 49 | 47 | 27 |
9P WILD-TYPE | 15 | 82 | 54 |
Figure S89. Get High-res Image Gene #17: '9p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D17V10.png)
P value = 8.6e-10 (Chi-square test), Q value = 3.1e-07
Table S90. Gene #18: '9q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
9Q MUTATED | 28 | 10 | 33 | 6 | 47 | 0 |
9Q WILD-TYPE | 123 | 17 | 22 | 7 | 35 | 3 |
Figure S90. Get High-res Image Gene #18: '9q' versus Molecular Subtype #1: 'CN_CNMF'
![](D18V1.png)
P value = 7.42e-05 (Fisher's exact test), Q value = 0.018
Table S91. Gene #18: '9q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
9Q MUTATED | 6 | 31 | 18 | 43 |
9Q WILD-TYPE | 31 | 49 | 47 | 33 |
Figure S91. Get High-res Image Gene #18: '9q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D18V2.png)
P value = 0.000377 (Chi-square test), Q value = 0.078
Table S92. Gene #18: '9q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
9Q MUTATED | 16 | 16 | 20 | 12 | 36 |
9Q WILD-TYPE | 49 | 46 | 26 | 25 | 26 |
Figure S92. Get High-res Image Gene #18: '9q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D18V5.png)
P value = 0.00065 (Fisher's exact test), Q value = 0.13
Table S93. Gene #18: '9q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
9Q MUTATED | 37 | 46 | 22 |
9Q WILD-TYPE | 27 | 83 | 59 |
Figure S93. Get High-res Image Gene #18: '9q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V10.png)
P value = 9.98e-21 (Chi-square test), Q value = 4e-18
Table S94. Gene #19: '10p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
10P MUTATED | 14 | 11 | 39 | 2 | 51 | 1 |
10P WILD-TYPE | 137 | 16 | 16 | 11 | 31 | 2 |
Figure S94. Get High-res Image Gene #19: '10p' versus Molecular Subtype #1: 'CN_CNMF'
![](D19V1.png)
P value = 3.99e-09 (Fisher's exact test), Q value = 1.4e-06
Table S95. Gene #19: '10p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
10P MUTATED | 4 | 24 | 14 | 48 |
10P WILD-TYPE | 33 | 56 | 51 | 28 |
Figure S95. Get High-res Image Gene #19: '10p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D19V2.png)
P value = 4.89e-06 (Chi-square test), Q value = 0.0014
Table S96. Gene #19: '10p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
10P MUTATED | 14 | 16 | 15 | 10 | 39 |
10P WILD-TYPE | 51 | 46 | 31 | 27 | 23 |
Figure S96. Get High-res Image Gene #19: '10p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D19V5.png)
P value = 0.000173 (Fisher's exact test), Q value = 0.04
Table S97. Gene #19: '10p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
10P MUTATED | 38 | 34 | 22 |
10P WILD-TYPE | 31 | 79 | 68 |
Figure S97. Get High-res Image Gene #19: '10p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D19V6.png)
P value = 0.000129 (Fisher's exact test), Q value = 0.03
Table S98. Gene #19: '10p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
10P MUTATED | 27 | 28 | 58 |
10P WILD-TYPE | 78 | 73 | 57 |
Figure S98. Get High-res Image Gene #19: '10p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D19V7.png)
P value = 5.81e-06 (Fisher's exact test), Q value = 0.0017
Table S99. Gene #19: '10p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
10P MUTATED | 30 | 47 | 36 |
10P WILD-TYPE | 72 | 34 | 102 |
Figure S99. Get High-res Image Gene #19: '10p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D19V8.png)
P value = 4.58e-05 (Fisher's exact test), Q value = 0.012
Table S100. Gene #19: '10p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
10P MUTATED | 37 | 37 | 20 |
10P WILD-TYPE | 27 | 92 | 61 |
Figure S100. Get High-res Image Gene #19: '10p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V10.png)
P value = 8.71e-16 (Chi-square test), Q value = 3.4e-13
Table S101. Gene #20: '10q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
10Q MUTATED | 12 | 8 | 33 | 3 | 43 | 0 |
10Q WILD-TYPE | 139 | 19 | 22 | 10 | 39 | 3 |
Figure S101. Get High-res Image Gene #20: '10q' versus Molecular Subtype #1: 'CN_CNMF'
![](D20V1.png)
P value = 1.06e-06 (Fisher's exact test), Q value = 0.00033
Table S102. Gene #20: '10q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
10Q MUTATED | 4 | 18 | 12 | 40 |
10Q WILD-TYPE | 33 | 62 | 53 | 36 |
Figure S102. Get High-res Image Gene #20: '10q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 1.93e-06 (Chi-square test), Q value = 0.00057
Table S103. Gene #20: '10q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
10Q MUTATED | 12 | 11 | 10 | 9 | 35 |
10Q WILD-TYPE | 53 | 51 | 36 | 28 | 27 |
Figure S103. Get High-res Image Gene #20: '10q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D20V5.png)
P value = 8.98e-05 (Fisher's exact test), Q value = 0.022
Table S104. Gene #20: '10q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
10Q MUTATED | 33 | 29 | 15 |
10Q WILD-TYPE | 36 | 84 | 75 |
Figure S104. Get High-res Image Gene #20: '10q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 0.000624 (Fisher's exact test), Q value = 0.12
Table S105. Gene #20: '10q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
10Q MUTATED | 24 | 38 | 33 |
10Q WILD-TYPE | 78 | 43 | 105 |
Figure S105. Get High-res Image Gene #20: '10q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D20V8.png)
P value = 0.000149 (Fisher's exact test), Q value = 0.035
Table S106. Gene #20: '10q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
10Q MUTATED | 31 | 32 | 14 |
10Q WILD-TYPE | 33 | 97 | 67 |
Figure S106. Get High-res Image Gene #20: '10q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V10.png)
P value = 1.98e-08 (Chi-square test), Q value = 6.7e-06
Table S107. Gene #21: '11p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
11P MUTATED | 15 | 6 | 19 | 2 | 39 | 1 |
11P WILD-TYPE | 136 | 21 | 36 | 11 | 43 | 2 |
Figure S107. Get High-res Image Gene #21: '11p' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 2.23e-05 (Fisher's exact test), Q value = 0.0059
Table S108. Gene #21: '11p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
11P MUTATED | 7 | 13 | 8 | 34 |
11P WILD-TYPE | 30 | 67 | 57 | 42 |
Figure S108. Get High-res Image Gene #21: '11p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 0.000327 (Fisher's exact test), Q value = 0.07
Table S109. Gene #21: '11p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
11P MUTATED | 27 | 18 | 13 |
11P WILD-TYPE | 42 | 95 | 77 |
Figure S109. Get High-res Image Gene #21: '11p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.000238 (Fisher's exact test), Q value = 0.053
Table S110. Gene #21: '11p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
11P MUTATED | 15 | 33 | 30 |
11P WILD-TYPE | 87 | 48 | 108 |
Figure S110. Get High-res Image Gene #21: '11p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D21V8.png)
P value = 0.000526 (Fisher's exact test), Q value = 0.1
Table S111. Gene #21: '11p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
11P MUTATED | 27 | 23 | 14 |
11P WILD-TYPE | 37 | 106 | 67 |
Figure S111. Get High-res Image Gene #21: '11p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D21V10.png)
P value = 4.13e-07 (Chi-square test), Q value = 0.00013
Table S112. Gene #22: '11q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
11Q MUTATED | 18 | 6 | 22 | 2 | 37 | 1 |
11Q WILD-TYPE | 133 | 21 | 33 | 11 | 45 | 2 |
Figure S112. Get High-res Image Gene #22: '11q' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.000941 (Fisher's exact test), Q value = 0.17
Table S113. Gene #22: '11q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
11Q MUTATED | 8 | 14 | 9 | 31 |
11Q WILD-TYPE | 29 | 66 | 56 | 45 |
Figure S113. Get High-res Image Gene #22: '11q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D22V2.png)
P value = 6.47e-13 (Chi-square test), Q value = 2.5e-10
Table S114. Gene #23: '12p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
12P MUTATED | 20 | 10 | 27 | 2 | 51 | 1 |
12P WILD-TYPE | 131 | 17 | 28 | 11 | 31 | 2 |
Figure S114. Get High-res Image Gene #23: '12p' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 4.06e-07 (Fisher's exact test), Q value = 0.00013
Table S115. Gene #23: '12p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
12P MUTATED | 11 | 20 | 11 | 45 |
12P WILD-TYPE | 26 | 60 | 54 | 31 |
Figure S115. Get High-res Image Gene #23: '12p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D23V2.png)
P value = 1.8e-06 (Chi-square test), Q value = 0.00054
Table S116. Gene #23: '12p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
12P MUTATED | 14 | 12 | 13 | 12 | 38 |
12P WILD-TYPE | 51 | 50 | 33 | 25 | 24 |
Figure S116. Get High-res Image Gene #23: '12p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D23V5.png)
P value = 0.000188 (Fisher's exact test), Q value = 0.043
Table S117. Gene #23: '12p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
12P MUTATED | 29 | 23 | 55 |
12P WILD-TYPE | 76 | 78 | 60 |
Figure S117. Get High-res Image Gene #23: '12p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D23V7.png)
P value = 0.000325 (Fisher's exact test), Q value = 0.07
Table S118. Gene #23: '12p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
12P MUTATED | 27 | 42 | 38 |
12P WILD-TYPE | 75 | 39 | 100 |
Figure S118. Get High-res Image Gene #23: '12p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.063
Table S119. Gene #23: '12p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
12P MUTATED | 20 | 58 | 14 |
12P WILD-TYPE | 44 | 73 | 65 |
Figure S119. Get High-res Image Gene #23: '12p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D23V9.png)
P value = 3.56e-05 (Fisher's exact test), Q value = 0.0092
Table S120. Gene #23: '12p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
12P MUTATED | 36 | 39 | 17 |
12P WILD-TYPE | 28 | 90 | 64 |
Figure S120. Get High-res Image Gene #23: '12p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V10.png)
P value = 1.6e-06 (Chi-square test), Q value = 0.00048
Table S121. Gene #24: '12q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
12Q MUTATED | 20 | 9 | 24 | 2 | 36 | 1 |
12Q WILD-TYPE | 131 | 18 | 31 | 11 | 46 | 2 |
Figure S121. Get High-res Image Gene #24: '12q' versus Molecular Subtype #1: 'CN_CNMF'
![](D24V1.png)
P value = 0.000302 (Fisher's exact test), Q value = 0.065
Table S122. Gene #24: '12q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
12Q MUTATED | 13 | 16 | 11 | 35 |
12Q WILD-TYPE | 24 | 64 | 54 | 41 |
Figure S122. Get High-res Image Gene #24: '12q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D24V2.png)
P value = 1.78e-09 (Chi-square test), Q value = 6.3e-07
Table S123. Gene #25: '13q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
13Q MUTATED | 38 | 21 | 25 | 5 | 52 | 0 |
13Q WILD-TYPE | 113 | 6 | 30 | 8 | 30 | 3 |
Figure S123. Get High-res Image Gene #25: '13q' versus Molecular Subtype #1: 'CN_CNMF'
![](D25V1.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.21
Table S124. Gene #25: '13q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
13Q MUTATED | 10 | 29 | 21 | 45 |
13Q WILD-TYPE | 27 | 51 | 44 | 31 |
Figure S124. Get High-res Image Gene #25: '13q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.000363 (Fisher's exact test), Q value = 0.077
Table S125. Gene #25: '13q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
13Q MUTATED | 35 | 36 | 66 |
13Q WILD-TYPE | 70 | 65 | 49 |
Figure S125. Get High-res Image Gene #25: '13q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D25V7.png)
P value = 0.000902 (Fisher's exact test), Q value = 0.17
Table S126. Gene #25: '13q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
13Q MUTATED | 36 | 49 | 52 |
13Q WILD-TYPE | 66 | 32 | 86 |
Figure S126. Get High-res Image Gene #25: '13q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D25V8.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.024
Table S127. Gene #25: '13q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
13Q MUTATED | 41 | 45 | 26 |
13Q WILD-TYPE | 23 | 84 | 55 |
Figure S127. Get High-res Image Gene #25: '13q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D25V10.png)
P value = 1.29e-09 (Chi-square test), Q value = 4.6e-07
Table S128. Gene #26: '14q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
14Q MUTATED | 19 | 9 | 28 | 2 | 41 | 1 |
14Q WILD-TYPE | 132 | 18 | 27 | 11 | 41 | 2 |
Figure S128. Get High-res Image Gene #26: '14q' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.000623 (Fisher's exact test), Q value = 0.12
Table S129. Gene #26: '14q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
14Q MUTATED | 5 | 19 | 14 | 35 |
14Q WILD-TYPE | 32 | 61 | 51 | 41 |
Figure S129. Get High-res Image Gene #26: '14q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D26V2.png)
P value = 0.000537 (Chi-square test), Q value = 0.11
Table S130. Gene #26: '14q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
14Q MUTATED | 11 | 17 | 11 | 6 | 30 |
14Q WILD-TYPE | 54 | 45 | 35 | 31 | 32 |
Figure S130. Get High-res Image Gene #26: '14q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D26V5.png)
P value = 0.000368 (Fisher's exact test), Q value = 0.077
Table S131. Gene #26: '14q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
14Q MUTATED | 32 | 22 | 21 |
14Q WILD-TYPE | 37 | 91 | 69 |
Figure S131. Get High-res Image Gene #26: '14q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D26V6.png)
P value = 1.99e-05 (Fisher's exact test), Q value = 0.0053
Table S132. Gene #26: '14q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
14Q MUTATED | 16 | 28 | 50 |
14Q WILD-TYPE | 89 | 73 | 65 |
Figure S132. Get High-res Image Gene #26: '14q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D26V7.png)
P value = 0.000269 (Fisher's exact test), Q value = 0.059
Table S133. Gene #26: '14q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
14Q MUTATED | 32 | 29 | 19 |
14Q WILD-TYPE | 32 | 100 | 62 |
Figure S133. Get High-res Image Gene #26: '14q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D26V10.png)
P value = 1.17e-11 (Chi-square test), Q value = 4.4e-09
Table S134. Gene #27: '15q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
15Q MUTATED | 13 | 10 | 28 | 2 | 39 | 1 |
15Q WILD-TYPE | 138 | 17 | 27 | 11 | 43 | 2 |
Figure S134. Get High-res Image Gene #27: '15q' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 7.55e-08 (Fisher's exact test), Q value = 2.5e-05
Table S135. Gene #27: '15q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
15Q MUTATED | 6 | 17 | 8 | 41 |
15Q WILD-TYPE | 31 | 63 | 57 | 35 |
Figure S135. Get High-res Image Gene #27: '15q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D27V2.png)
P value = 8.62e-07 (Chi-square test), Q value = 0.00027
Table S136. Gene #27: '15q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
15Q MUTATED | 13 | 5 | 10 | 9 | 32 |
15Q WILD-TYPE | 52 | 57 | 36 | 28 | 30 |
Figure S136. Get High-res Image Gene #27: '15q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D27V5.png)
P value = 9.85e-07 (Fisher's exact test), Q value = 0.00031
Table S137. Gene #27: '15q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
15Q MUTATED | 33 | 26 | 10 |
15Q WILD-TYPE | 36 | 87 | 80 |
Figure S137. Get High-res Image Gene #27: '15q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 0.000711 (Fisher's exact test), Q value = 0.14
Table S138. Gene #27: '15q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
15Q MUTATED | 24 | 18 | 46 |
15Q WILD-TYPE | 81 | 83 | 69 |
Figure S138. Get High-res Image Gene #27: '15q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D27V7.png)
P value = 9.59e-07 (Fisher's exact test), Q value = 3e-04
Table S139. Gene #27: '15q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
15Q MUTATED | 18 | 41 | 29 |
15Q WILD-TYPE | 84 | 40 | 109 |
Figure S139. Get High-res Image Gene #27: '15q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 2.46e-07 (Fisher's exact test), Q value = 7.9e-05
Table S140. Gene #27: '15q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
15Q MUTATED | 35 | 31 | 11 |
15Q WILD-TYPE | 29 | 98 | 70 |
Figure S140. Get High-res Image Gene #27: '15q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D27V10.png)
P value = 3.55e-17 (Chi-square test), Q value = 1.4e-14
Table S141. Gene #28: '16p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
16P MUTATED | 20 | 5 | 31 | 2 | 55 | 2 |
16P WILD-TYPE | 131 | 22 | 24 | 11 | 27 | 1 |
Figure S141. Get High-res Image Gene #28: '16p' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 4.23e-08 (Fisher's exact test), Q value = 1.4e-05
Table S142. Gene #28: '16p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
16P MUTATED | 5 | 19 | 15 | 46 |
16P WILD-TYPE | 32 | 61 | 50 | 30 |
Figure S142. Get High-res Image Gene #28: '16p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D28V2.png)
P value = 1.51e-08 (Chi-square test), Q value = 5.2e-06
Table S143. Gene #28: '16p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
16P MUTATED | 12 | 15 | 17 | 7 | 41 |
16P WILD-TYPE | 53 | 47 | 29 | 30 | 21 |
Figure S143. Get High-res Image Gene #28: '16p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D28V5.png)
P value = 3.3e-05 (Fisher's exact test), Q value = 0.0086
Table S144. Gene #28: '16p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
16P MUTATED | 39 | 28 | 25 |
16P WILD-TYPE | 30 | 85 | 65 |
Figure S144. Get High-res Image Gene #28: '16p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D28V6.png)
P value = 3.78e-06 (Fisher's exact test), Q value = 0.0011
Table S145. Gene #28: '16p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
16P MUTATED | 25 | 25 | 60 |
16P WILD-TYPE | 80 | 76 | 55 |
Figure S145. Get High-res Image Gene #28: '16p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D28V7.png)
P value = 7.99e-06 (Fisher's exact test), Q value = 0.0022
Table S146. Gene #28: '16p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
16P MUTATED | 28 | 46 | 36 |
16P WILD-TYPE | 74 | 35 | 102 |
Figure S146. Get High-res Image Gene #28: '16p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 0.000375 (Fisher's exact test), Q value = 0.078
Table S147. Gene #28: '16p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
16P MUTATED | 12 | 59 | 21 |
16P WILD-TYPE | 52 | 72 | 58 |
Figure S147. Get High-res Image Gene #28: '16p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D28V9.png)
P value = 1.17e-06 (Fisher's exact test), Q value = 0.00036
Table S148. Gene #28: '16p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
16P MUTATED | 39 | 35 | 18 |
16P WILD-TYPE | 25 | 94 | 63 |
Figure S148. Get High-res Image Gene #28: '16p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V10.png)
P value = 1.2e-14 (Chi-square test), Q value = 4.6e-12
Table S149. Gene #29: '16q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
16Q MUTATED | 22 | 5 | 29 | 2 | 53 | 2 |
16Q WILD-TYPE | 129 | 22 | 26 | 11 | 29 | 1 |
Figure S149. Get High-res Image Gene #29: '16q' versus Molecular Subtype #1: 'CN_CNMF'
![](D29V1.png)
P value = 4.06e-08 (Fisher's exact test), Q value = 1.3e-05
Table S150. Gene #29: '16q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
16Q MUTATED | 5 | 18 | 16 | 46 |
16Q WILD-TYPE | 32 | 62 | 49 | 30 |
Figure S150. Get High-res Image Gene #29: '16q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D29V2.png)
P value = 7.07e-09 (Chi-square test), Q value = 2.4e-06
Table S151. Gene #29: '16q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
16Q MUTATED | 11 | 17 | 18 | 6 | 41 |
16Q WILD-TYPE | 54 | 45 | 28 | 31 | 21 |
Figure S151. Get High-res Image Gene #29: '16q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D29V5.png)
P value = 1.07e-05 (Fisher's exact test), Q value = 0.0029
Table S152. Gene #29: '16q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
16Q MUTATED | 40 | 27 | 26 |
16Q WILD-TYPE | 29 | 86 | 64 |
Figure S152. Get High-res Image Gene #29: '16q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D29V6.png)
P value = 7.1e-06 (Fisher's exact test), Q value = 0.002
Table S153. Gene #29: '16q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
16Q MUTATED | 24 | 26 | 59 |
16Q WILD-TYPE | 81 | 75 | 56 |
Figure S153. Get High-res Image Gene #29: '16q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D29V7.png)
P value = 5.12e-05 (Fisher's exact test), Q value = 0.013
Table S154. Gene #29: '16q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
16Q MUTATED | 30 | 44 | 35 |
16Q WILD-TYPE | 72 | 37 | 103 |
Figure S154. Get High-res Image Gene #29: '16q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 1.91e-05 (Fisher's exact test), Q value = 0.0051
Table S155. Gene #29: '16q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
16Q MUTATED | 37 | 34 | 20 |
16Q WILD-TYPE | 27 | 95 | 61 |
Figure S155. Get High-res Image Gene #29: '16q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V10.png)
P value = 3.66e-22 (Chi-square test), Q value = 1.5e-19
Table S156. Gene #30: '17p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
17P MUTATED | 18 | 18 | 35 | 3 | 59 | 3 |
17P WILD-TYPE | 133 | 9 | 20 | 10 | 23 | 0 |
Figure S156. Get High-res Image Gene #30: '17p' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 1.26e-09 (Fisher's exact test), Q value = 4.5e-07
Table S157. Gene #30: '17p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
17P MUTATED | 7 | 31 | 14 | 53 |
17P WILD-TYPE | 30 | 49 | 51 | 23 |
Figure S157. Get High-res Image Gene #30: '17p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D30V2.png)
P value = 3.23e-08 (Chi-square test), Q value = 1.1e-05
Table S158. Gene #30: '17p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
17P MUTATED | 16 | 12 | 21 | 14 | 43 |
17P WILD-TYPE | 49 | 50 | 25 | 23 | 19 |
Figure S158. Get High-res Image Gene #30: '17p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D30V5.png)
P value = 6.47e-07 (Fisher's exact test), Q value = 2e-04
Table S159. Gene #30: '17p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
17P MUTATED | 45 | 39 | 22 |
17P WILD-TYPE | 24 | 74 | 68 |
Figure S159. Get High-res Image Gene #30: '17p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D30V6.png)
P value = 1.73e-05 (Fisher's exact test), Q value = 0.0047
Table S160. Gene #30: '17p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
17P MUTATED | 39 | 27 | 66 |
17P WILD-TYPE | 66 | 74 | 49 |
Figure S160. Get High-res Image Gene #30: '17p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D30V7.png)
P value = 3.74e-07 (Fisher's exact test), Q value = 0.00012
Table S161. Gene #30: '17p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
17P MUTATED | 30 | 54 | 48 |
17P WILD-TYPE | 72 | 27 | 90 |
Figure S161. Get High-res Image Gene #30: '17p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.00108 (Fisher's exact test), Q value = 0.2
Table S162. Gene #30: '17p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
17P MUTATED | 24 | 68 | 21 |
17P WILD-TYPE | 40 | 63 | 58 |
Figure S162. Get High-res Image Gene #30: '17p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D30V9.png)
P value = 1.44e-08 (Fisher's exact test), Q value = 4.9e-06
Table S163. Gene #30: '17p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
17P MUTATED | 47 | 43 | 23 |
17P WILD-TYPE | 17 | 86 | 58 |
Figure S163. Get High-res Image Gene #30: '17p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V10.png)
P value = 5.05e-10 (Chi-square test), Q value = 1.8e-07
Table S164. Gene #31: '17q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
17Q MUTATED | 15 | 11 | 22 | 3 | 41 | 2 |
17Q WILD-TYPE | 136 | 16 | 33 | 10 | 41 | 1 |
Figure S164. Get High-res Image Gene #31: '17q' versus Molecular Subtype #1: 'CN_CNMF'
![](D31V1.png)
P value = 0.000151 (Fisher's exact test), Q value = 0.035
Table S165. Gene #31: '17q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
17Q MUTATED | 31 | 26 | 14 |
17Q WILD-TYPE | 38 | 87 | 76 |
Figure S165. Get High-res Image Gene #31: '17q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D31V6.png)
P value = 0.00121 (Fisher's exact test), Q value = 0.22
Table S166. Gene #31: '17q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
17Q MUTATED | 27 | 18 | 46 |
17Q WILD-TYPE | 78 | 83 | 69 |
Figure S166. Get High-res Image Gene #31: '17q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D31V7.png)
P value = 1.19e-12 (Chi-square test), Q value = 4.5e-10
Table S167. Gene #32: '18p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
18P MUTATED | 38 | 14 | 39 | 3 | 57 | 3 |
18P WILD-TYPE | 113 | 13 | 16 | 10 | 25 | 0 |
Figure S167. Get High-res Image Gene #32: '18p' versus Molecular Subtype #1: 'CN_CNMF'
![](D32V1.png)
P value = 0.000412 (Fisher's exact test), Q value = 0.085
Table S168. Gene #32: '18p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
18P MUTATED | 14 | 29 | 24 | 50 |
18P WILD-TYPE | 23 | 51 | 41 | 26 |
Figure S168. Get High-res Image Gene #32: '18p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D32V2.png)
P value = 2.15e-05 (Fisher's exact test), Q value = 0.0057
Table S169. Gene #32: '18p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
18P MUTATED | 34 | 42 | 72 |
18P WILD-TYPE | 71 | 59 | 43 |
Figure S169. Get High-res Image Gene #32: '18p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D32V7.png)
P value = 3.19e-05 (Fisher's exact test), Q value = 0.0083
Table S170. Gene #32: '18p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
18P MUTATED | 40 | 55 | 53 |
18P WILD-TYPE | 62 | 26 | 85 |
Figure S170. Get High-res Image Gene #32: '18p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D32V8.png)
P value = 0.000113 (Fisher's exact test), Q value = 0.027
Table S171. Gene #32: '18p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
18P MUTATED | 45 | 52 | 32 |
18P WILD-TYPE | 19 | 77 | 49 |
Figure S171. Get High-res Image Gene #32: '18p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D32V10.png)
P value = 5.55e-15 (Chi-square test), Q value = 2.1e-12
Table S172. Gene #33: '18q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
18Q MUTATED | 37 | 15 | 41 | 3 | 61 | 2 |
18Q WILD-TYPE | 114 | 12 | 14 | 10 | 21 | 1 |
Figure S172. Get High-res Image Gene #33: '18q' versus Molecular Subtype #1: 'CN_CNMF'
![](D33V1.png)
P value = 0.000561 (Fisher's exact test), Q value = 0.11
Table S173. Gene #33: '18q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
18Q MUTATED | 16 | 28 | 25 | 50 |
18Q WILD-TYPE | 21 | 52 | 40 | 26 |
Figure S173. Get High-res Image Gene #33: '18q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D33V2.png)
P value = 0.000893 (Chi-square test), Q value = 0.17
Table S174. Gene #33: '18q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
18Q MUTATED | 23 | 22 | 23 | 12 | 41 |
18Q WILD-TYPE | 42 | 40 | 23 | 25 | 21 |
Figure S174. Get High-res Image Gene #33: '18q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D33V5.png)
P value = 4.42e-06 (Fisher's exact test), Q value = 0.0013
Table S175. Gene #33: '18q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
18Q MUTATED | 38 | 39 | 76 |
18Q WILD-TYPE | 67 | 62 | 39 |
Figure S175. Get High-res Image Gene #33: '18q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D33V7.png)
P value = 1.1e-05 (Fisher's exact test), Q value = 0.003
Table S176. Gene #33: '18q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
18Q MUTATED | 39 | 57 | 57 |
18Q WILD-TYPE | 63 | 24 | 81 |
Figure S176. Get High-res Image Gene #33: '18q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D33V8.png)
P value = 0.000128 (Fisher's exact test), Q value = 0.03
Table S177. Gene #33: '18q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
18Q MUTATED | 45 | 54 | 31 |
18Q WILD-TYPE | 19 | 75 | 50 |
Figure S177. Get High-res Image Gene #33: '18q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V10.png)
P value = 2.37e-21 (Chi-square test), Q value = 9.5e-19
Table S178. Gene #34: '19p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
19P MUTATED | 14 | 12 | 32 | 3 | 59 | 2 |
19P WILD-TYPE | 137 | 15 | 23 | 10 | 23 | 1 |
Figure S178. Get High-res Image Gene #34: '19p' versus Molecular Subtype #1: 'CN_CNMF'
![](D34V1.png)
P value = 8.26e-11 (Fisher's exact test), Q value = 3e-08
Table S179. Gene #34: '19p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
19P MUTATED | 9 | 23 | 9 | 51 |
19P WILD-TYPE | 28 | 57 | 56 | 25 |
Figure S179. Get High-res Image Gene #34: '19p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D34V2.png)
P value = 1.87e-11 (Chi-square test), Q value = 6.9e-09
Table S180. Gene #34: '19p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
19P MUTATED | 15 | 9 | 16 | 9 | 45 |
19P WILD-TYPE | 50 | 53 | 30 | 28 | 17 |
Figure S180. Get High-res Image Gene #34: '19p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D34V5.png)
P value = 6.81e-09 (Fisher's exact test), Q value = 2.4e-06
Table S181. Gene #34: '19p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
19P MUTATED | 44 | 34 | 16 |
19P WILD-TYPE | 25 | 79 | 74 |
Figure S181. Get High-res Image Gene #34: '19p' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D34V6.png)
P value = 1.42e-06 (Fisher's exact test), Q value = 0.00043
Table S182. Gene #34: '19p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
19P MUTATED | 31 | 24 | 64 |
19P WILD-TYPE | 74 | 77 | 51 |
Figure S182. Get High-res Image Gene #34: '19p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D34V7.png)
P value = 4.25e-11 (Fisher's exact test), Q value = 1.6e-08
Table S183. Gene #34: '19p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
19P MUTATED | 23 | 56 | 40 |
19P WILD-TYPE | 79 | 25 | 98 |
Figure S183. Get High-res Image Gene #34: '19p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D34V8.png)
P value = 0.000877 (Fisher's exact test), Q value = 0.17
Table S184. Gene #34: '19p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
19P MUTATED | 19 | 63 | 19 |
19P WILD-TYPE | 45 | 68 | 60 |
Figure S184. Get High-res Image Gene #34: '19p' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D34V9.png)
P value = 1.13e-09 (Fisher's exact test), Q value = 4.1e-07
Table S185. Gene #34: '19p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
19P MUTATED | 45 | 39 | 17 |
19P WILD-TYPE | 19 | 90 | 64 |
Figure S185. Get High-res Image Gene #34: '19p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V10.png)
P value = 4.45e-18 (Chi-square test), Q value = 1.8e-15
Table S186. Gene #35: '19q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
19Q MUTATED | 16 | 12 | 26 | 4 | 58 | 2 |
19Q WILD-TYPE | 135 | 15 | 29 | 9 | 24 | 1 |
Figure S186. Get High-res Image Gene #35: '19q' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 2.42e-09 (Fisher's exact test), Q value = 8.5e-07
Table S187. Gene #35: '19q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
19Q MUTATED | 10 | 21 | 9 | 48 |
19Q WILD-TYPE | 27 | 59 | 56 | 28 |
Figure S187. Get High-res Image Gene #35: '19q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D35V2.png)
P value = 0.00105 (Fisher's exact test), Q value = 0.19
Table S188. Gene #35: '19q' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 90 | 91 |
19Q MUTATED | 23 | 20 | 43 |
19Q WILD-TYPE | 59 | 70 | 48 |
Figure S188. Get High-res Image Gene #35: '19q' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D35V3.png)
P value = 1.24e-10 (Chi-square test), Q value = 4.6e-08
Table S189. Gene #35: '19q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
19Q MUTATED | 15 | 8 | 16 | 9 | 43 |
19Q WILD-TYPE | 50 | 54 | 30 | 28 | 19 |
Figure S189. Get High-res Image Gene #35: '19q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D35V5.png)
P value = 1.22e-07 (Fisher's exact test), Q value = 4e-05
Table S190. Gene #35: '19q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
19Q MUTATED | 40 | 37 | 14 |
19Q WILD-TYPE | 29 | 76 | 76 |
Figure S190. Get High-res Image Gene #35: '19q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D35V6.png)
P value = 1.26e-06 (Fisher's exact test), Q value = 0.00039
Table S191. Gene #35: '19q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
19Q MUTATED | 30 | 22 | 62 |
19Q WILD-TYPE | 75 | 79 | 53 |
Figure S191. Get High-res Image Gene #35: '19q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D35V7.png)
P value = 1.32e-10 (Fisher's exact test), Q value = 4.8e-08
Table S192. Gene #35: '19q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
19Q MUTATED | 22 | 54 | 38 |
19Q WILD-TYPE | 80 | 27 | 100 |
Figure S192. Get High-res Image Gene #35: '19q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 0.000462 (Fisher's exact test), Q value = 0.093
Table S193. Gene #35: '19q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
19Q MUTATED | 18 | 61 | 17 |
19Q WILD-TYPE | 46 | 70 | 62 |
Figure S193. Get High-res Image Gene #35: '19q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D35V9.png)
P value = 6.52e-09 (Fisher's exact test), Q value = 2.3e-06
Table S194. Gene #35: '19q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
19Q MUTATED | 43 | 36 | 17 |
19Q WILD-TYPE | 21 | 93 | 64 |
Figure S194. Get High-res Image Gene #35: '19q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V10.png)
P value = 1.38e-16 (Chi-square test), Q value = 5.4e-14
Table S195. Gene #36: '20p' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
20P MUTATED | 51 | 24 | 47 | 7 | 67 | 2 |
20P WILD-TYPE | 100 | 3 | 8 | 6 | 15 | 1 |
Figure S195. Get High-res Image Gene #36: '20p' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 4.09e-08 (Fisher's exact test), Q value = 1.4e-05
Table S196. Gene #36: '20p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
20P MUTATED | 24 | 39 | 25 | 64 |
20P WILD-TYPE | 13 | 41 | 40 | 12 |
Figure S196. Get High-res Image Gene #36: '20p' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 0.000237 (Chi-square test), Q value = 0.053
Table S197. Gene #36: '20p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
20P MUTATED | 27 | 29 | 28 | 22 | 49 |
20P WILD-TYPE | 38 | 33 | 18 | 15 | 13 |
Figure S197. Get High-res Image Gene #36: '20p' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D36V5.png)
P value = 3.77e-06 (Fisher's exact test), Q value = 0.0011
Table S198. Gene #36: '20p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
20P MUTATED | 54 | 48 | 89 |
20P WILD-TYPE | 51 | 53 | 26 |
Figure S198. Get High-res Image Gene #36: '20p' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D36V7.png)
P value = 8.38e-06 (Fisher's exact test), Q value = 0.0023
Table S199. Gene #36: '20p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
20P MUTATED | 47 | 65 | 79 |
20P WILD-TYPE | 55 | 16 | 59 |
Figure S199. Get High-res Image Gene #36: '20p' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 6.81e-06 (Fisher's exact test), Q value = 0.0019
Table S200. Gene #36: '20p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
20P MUTATED | 54 | 67 | 41 |
20P WILD-TYPE | 10 | 62 | 40 |
Figure S200. Get High-res Image Gene #36: '20p' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V10.png)
P value = 3.87e-16 (Chi-square test), Q value = 1.5e-13
Table S201. Gene #37: '20q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
20Q MUTATED | 57 | 25 | 45 | 8 | 72 | 2 |
20Q WILD-TYPE | 94 | 2 | 10 | 5 | 10 | 1 |
Figure S201. Get High-res Image Gene #37: '20q' versus Molecular Subtype #1: 'CN_CNMF'
![](D37V1.png)
P value = 9.57e-10 (Fisher's exact test), Q value = 3.4e-07
Table S202. Gene #37: '20q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
20Q MUTATED | 25 | 42 | 28 | 69 |
20Q WILD-TYPE | 12 | 38 | 37 | 7 |
Figure S202. Get High-res Image Gene #37: '20q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D37V2.png)
P value = 1.02e-06 (Chi-square test), Q value = 0.00032
Table S203. Gene #37: '20q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
20Q MUTATED | 29 | 31 | 27 | 24 | 56 |
20Q WILD-TYPE | 36 | 31 | 19 | 13 | 6 |
Figure S203. Get High-res Image Gene #37: '20q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D37V5.png)
P value = 7.6e-05 (Fisher's exact test), Q value = 0.019
Table S204. Gene #37: '20q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
20Q MUTATED | 57 | 63 | 47 |
20Q WILD-TYPE | 12 | 50 | 43 |
Figure S204. Get High-res Image Gene #37: '20q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D37V6.png)
P value = 2.26e-06 (Fisher's exact test), Q value = 0.00067
Table S205. Gene #37: '20q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
20Q MUTATED | 56 | 53 | 93 |
20Q WILD-TYPE | 49 | 48 | 22 |
Figure S205. Get High-res Image Gene #37: '20q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D37V7.png)
P value = 1.03e-09 (Fisher's exact test), Q value = 3.7e-07
Table S206. Gene #37: '20q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
20Q MUTATED | 49 | 73 | 80 |
20Q WILD-TYPE | 53 | 8 | 58 |
Figure S206. Get High-res Image Gene #37: '20q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D37V8.png)
P value = 2.37e-09 (Fisher's exact test), Q value = 8.3e-07
Table S207. Gene #37: '20q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
20Q MUTATED | 60 | 73 | 41 |
20Q WILD-TYPE | 4 | 56 | 40 |
Figure S207. Get High-res Image Gene #37: '20q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V10.png)
P value = 1.92e-15 (Chi-square test), Q value = 7.4e-13
Table S208. Gene #38: '21q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
21Q MUTATED | 26 | 13 | 38 | 6 | 54 | 3 |
21Q WILD-TYPE | 125 | 14 | 17 | 7 | 28 | 0 |
Figure S208. Get High-res Image Gene #38: '21q' versus Molecular Subtype #1: 'CN_CNMF'
![](D38V1.png)
P value = 3.41e-08 (Fisher's exact test), Q value = 1.1e-05
Table S209. Gene #38: '21q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
21Q MUTATED | 3 | 38 | 21 | 48 |
21Q WILD-TYPE | 34 | 42 | 44 | 28 |
Figure S209. Get High-res Image Gene #38: '21q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D38V2.png)
P value = 0.000367 (Chi-square test), Q value = 0.077
Table S210. Gene #38: '21q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
21Q MUTATED | 20 | 19 | 16 | 14 | 40 |
21Q WILD-TYPE | 45 | 43 | 30 | 23 | 22 |
Figure S210. Get High-res Image Gene #38: '21q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D38V5.png)
P value = 2.14e-05 (Fisher's exact test), Q value = 0.0057
Table S211. Gene #38: '21q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
21Q MUTATED | 44 | 38 | 27 |
21Q WILD-TYPE | 25 | 75 | 63 |
Figure S211. Get High-res Image Gene #38: '21q' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D38V6.png)
P value = 6.12e-05 (Fisher's exact test), Q value = 0.015
Table S212. Gene #38: '21q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
21Q MUTATED | 33 | 35 | 67 |
21Q WILD-TYPE | 72 | 66 | 48 |
Figure S212. Get High-res Image Gene #38: '21q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D38V7.png)
P value = 1.5e-06 (Fisher's exact test), Q value = 0.00045
Table S213. Gene #38: '21q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
21Q MUTATED | 33 | 54 | 48 |
21Q WILD-TYPE | 69 | 27 | 90 |
Figure S213. Get High-res Image Gene #38: '21q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D38V8.png)
P value = 0.000977 (Fisher's exact test), Q value = 0.18
Table S214. Gene #38: '21q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
21Q MUTATED | 19 | 71 | 27 |
21Q WILD-TYPE | 45 | 60 | 52 |
Figure S214. Get High-res Image Gene #38: '21q' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D38V9.png)
P value = 1.73e-06 (Fisher's exact test), Q value = 0.00052
Table S215. Gene #38: '21q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
21Q MUTATED | 45 | 47 | 25 |
21Q WILD-TYPE | 19 | 82 | 56 |
Figure S215. Get High-res Image Gene #38: '21q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V10.png)
P value = 1.17e-19 (Chi-square test), Q value = 4.6e-17
Table S216. Gene #39: '22q' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
22Q MUTATED | 17 | 12 | 38 | 4 | 53 | 3 |
22Q WILD-TYPE | 134 | 15 | 17 | 9 | 29 | 0 |
Figure S216. Get High-res Image Gene #39: '22q' versus Molecular Subtype #1: 'CN_CNMF'
![](D39V1.png)
P value = 7.26e-08 (Fisher's exact test), Q value = 2.4e-05
Table S217. Gene #39: '22q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
22Q MUTATED | 5 | 29 | 17 | 49 |
22Q WILD-TYPE | 32 | 51 | 48 | 27 |
Figure S217. Get High-res Image Gene #39: '22q' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 5.52e-05 (Chi-square test), Q value = 0.014
Table S218. Gene #39: '22q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
22Q MUTATED | 13 | 19 | 17 | 14 | 38 |
22Q WILD-TYPE | 52 | 43 | 29 | 23 | 24 |
Figure S218. Get High-res Image Gene #39: '22q' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D39V5.png)
P value = 7.77e-07 (Fisher's exact test), Q value = 0.00024
Table S219. Gene #39: '22q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
22Q MUTATED | 24 | 33 | 65 |
22Q WILD-TYPE | 81 | 68 | 50 |
Figure S219. Get High-res Image Gene #39: '22q' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D39V7.png)
P value = 1.03e-08 (Fisher's exact test), Q value = 3.6e-06
Table S220. Gene #39: '22q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
22Q MUTATED | 29 | 54 | 39 |
22Q WILD-TYPE | 73 | 27 | 99 |
Figure S220. Get High-res Image Gene #39: '22q' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 2.49e-07 (Fisher's exact test), Q value = 8e-05
Table S221. Gene #39: '22q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
22Q MUTATED | 44 | 40 | 23 |
22Q WILD-TYPE | 20 | 89 | 58 |
Figure S221. Get High-res Image Gene #39: '22q' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V10.png)
P value = 4.01e-10 (Chi-square test), Q value = 1.5e-07
Table S222. Gene #40: 'xq' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 151 | 27 | 55 | 13 | 82 | 3 |
XQ MUTATED | 10 | 10 | 20 | 5 | 36 | 2 |
XQ WILD-TYPE | 141 | 17 | 35 | 8 | 46 | 1 |
Figure S222. Get High-res Image Gene #40: 'xq' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 0.000108 (Fisher's exact test), Q value = 0.026
Table S223. Gene #40: 'xq' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 80 | 65 | 76 |
XQ MUTATED | 2 | 24 | 7 | 26 |
XQ WILD-TYPE | 35 | 56 | 58 | 50 |
Figure S223. Get High-res Image Gene #40: 'xq' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D40V2.png)
P value = 0.000877 (Chi-square test), Q value = 0.17
Table S224. Gene #40: 'xq' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
XQ MUTATED | 6 | 10 | 13 | 14 | 22 |
XQ WILD-TYPE | 59 | 52 | 33 | 23 | 40 |
Figure S224. Get High-res Image Gene #40: 'xq' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D40V5.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.057
Table S225. Gene #40: 'xq' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
XQ MUTATED | 23 | 14 | 43 |
XQ WILD-TYPE | 82 | 87 | 72 |
Figure S225. Get High-res Image Gene #40: 'xq' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D40V7.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.22
Table S226. Gene #40: 'xq' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
XQ MUTATED | 11 | 45 | 11 |
XQ WILD-TYPE | 53 | 86 | 68 |
Figure S226. Get High-res Image Gene #40: 'xq' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D40V9.png)
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = STAD-TP.transferedmergedcluster.txt
-
Number of patients = 331
-
Number of significantly focal cnvs = 40
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.