Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	33 (59%)	23	0.17548	1	0.61207	1	0.68971	1	0.54867	1	0.49554	1	0.82998	1	0.66712	1	0.44429	1
1q	40 (71%)	16	0.86624	1	0.54906	1	0.76737	1	0.84204	1	0.86753	1	0.60439	1	0.83295	1	0.42802	1
2p	25 (45%)	31	0.60595	1	0.043172	1	0.21859	1	0.14434	1	0.36428	1	0.047877	1	0.24515	1	0.030795	1
2q	23 (41%)	33	0.75827	1	0.046831	1	0.11641	1	0.34142	1	0.41086	1	0.039509	1	0.31176	1	0.029318	1
3p	32 (57%)	24	0.34989	1	0.10469	1	0.33508	1	0.12263	1	0.53062	1	0.76518	1	0.72924	1	0.82462	1
3q	37 (66%)	19	0.69324	1	0.10694	1	0.066922	1	0.051369	1	0.10049	1	0.082816	1	0.30223	1	0.08167	1
4p	40 (71%)	16	0.050726	1	0.081467	1	0.057712	1	0.089983	1	0.0093188	1	0.19756	1	0.2463	1	0.16946	1
4q	36 (64%)	20	0.031896	1	0.021043	1	0.01749	1	0.048258	1	0.0005461	0.175	0.11592	1	0.057674	1	0.11631	1
5p	32 (57%)	24	0.70886	1	0.91348	1	0.35236	1	0.44727	1	0.86242	1	0.69883	1	0.83416	1	0.36619	1
5q	26 (46%)	30	0.79249	1	0.38571	1	0.79065	1	0.26083	1	0.52472	1	0.32685	1	0.066613	1	0.1828	1
6p	35 (62%)	21	0.088378	1	0.42526	1	0.88575	1	0.66116	1	0.95858	1	0.29787	1	0.93536	1	0.5788	1
6q	34 (61%)	22	0.022909	1	0.24764	1	0.93704	1	0.56957	1	0.86561	1	1	1	0.50868	1	0.77921	1
7p	34 (61%)	22	0.24844	1	0.16426	1	0.32273	1	0.1652	1	0.95858	1	0.75531	1	0.93536	1	0.79497	1
7q	30 (54%)	26	0.42817	1	0.55311	1	0.28619	1	0.40622	1	0.92398	1	0.60062	1	0.85424	1	0.51291	1
8p	42 (75%)	14	0.44902	1	0.54182	1	0.094042	1	0.64579	1	0.20421	1	0.72278	1	0.30928	1	0.5098	1
8q	39 (70%)	17	0.11611	1	0.16473	1	0.055318	1	0.5312	1	0.25119	1	0.64331	1	0.15604	1	0.45672	1
9p	40 (71%)	16	0.17683	1	0.040734	1	0.82016	1	0.84947	1	0.56835	1	1	1	0.83295	1	0.64147	1
9q	41 (73%)	15	0.16645	1	0.0052817	1	1	1	0.81322	1	0.63559	1	1	1	0.9346	1	0.77954	1
10p	44 (79%)	12	0.9098	1	0.20201	1	0.14664	1	0.41349	1	0.32994	1	0.095676	1	0.89243	1	0.1647	1
10q	38 (68%)	18	1	1	0.011562	1	0.043924	1	0.21036	1	0.88221	1	0.33322	1	0.53001	1	0.4808	1
11p	31 (55%)	25	0.83689	1	0.091209	1	0.41973	1	0.4959	1	0.32888	1	0.2413	1	0.65095	1	0.29972	1
11q	31 (55%)	25	0.83689	1	0.042723	1	0.30368	1	0.14458	1	0.32888	1	0.2413	1	0.56842	1	0.29972	1
12p	35 (62%)	21	0.40906	1	0.12856	1	0.01743	1	0.030585	1	0.67833	1	0.26889	1	0.41813	1	0.66578	1
12q	25 (45%)	31	0.68207	1	0.94671	1	0.47939	1	0.57758	1	0.93446	1	0.73019	1	0.41247	1	0.45522	1
13q	41 (73%)	15	0.91359	1	0.48396	1	1	1	0.62153	1	0.95771	1	0.57438	1	0.96689	1	1	1
14q	34 (61%)	22	0.6814	1	0.37684	1	0.62755	1	0.076847	1	0.86189	1	1	1	0.61094	1	0.67098	1
15q	36 (64%)	20	0.0212	1	0.53478	1	0.49531	1	0.54034	1	1	1	1	1	0.62797	1	1	1
16p	42 (75%)	14	0.35584	1	0.29847	1	0.79522	1	0.83549	1	0.64526	1	0.70449	1	0.18787	1	1	1
16q	43 (77%)	13	0.64942	1	0.81406	1	0.92191	1	0.83127	1	0.80147	1	1	1	0.27805	1	1	1
17p	43 (77%)	13	0.74173	1	0.078188	1	0.92191	1	0.24801	1	0.89182	1	0.54558	1	1	1	0.757	1
17q	35 (62%)	21	1	1	0.10424	1	0.32273	1	0.031001	1	0.22195	1	0.26889	1	0.63048	1	0.66578	1
18p	36 (64%)	20	0.72467	1	0.30404	1	1	1	0.30759	1	0.71911	1	0.26407	1	0.93217	1	0.26626	1
18q	34 (61%)	22	0.59324	1	0.8193	1	0.8603	1	0.13842	1	0.31934	1	0.13248	1	0.61094	1	0.14741	1
19p	39 (70%)	17	0.84301	1	0.20836	1	0.80565	1	0.79591	1	0.21182	1	0.75555	1	0.37366	1	0.53178	1
19q	41 (73%)	15	0.39183	1	0.07024	1	0.73238	1	0.33787	1	0.086722	1	0.72278	1	0.068671	1	0.5098	1
20p	44 (79%)	12	0.49043	1	0.73025	1	0.27088	1	0.48842	1	0.80147	1	0.54558	1	0.78349	1	0.757	1
20q	48 (86%)	8	0.60407	1	0.76053	1	0.041384	1	0.39389	1	0.17855	1	0.26118	1	0.14843	1	0.36946	1
21q	35 (62%)	21	0.55269	1	0.57379	1	0.56315	1	0.56328	1	0.85372	1	0.54614	1	0.91171	1	0.30763	1
22q	41 (73%)	15	0.79299	1	0.88307	1	0.38399	1	0.50102	1	0.79485	1	0.57438	1	0.5962	1	0.52433	1
xq	33 (59%)	23	0.49902	1	0.13653	1	0.92513	1	0.36409	1	0.62527	1	0.33226	1	0.66708	1	0.38412	1