min sampled: 11
max sampled: 20
avg sampled: 15.91623
15 17 14 18 19 12 16 15 17 18 17 18 17 18 17 16 18 15 16 14 16 15 15 16 13 18 17 15 19 14 14 17 18 18 16 15 18 13 15 17 18 15 17 16 14 14 12 16 14 15 19 12 15 16 18 14 18 15 15 18 15 15 14 15 14 16 15 16 17 17 19 14 17 16 16 16 15 13 16 13 17 16 18 11 14 17 19 15 19 16 15 16 15 14 17 15 19 17 16 17 15 16 15 16 15 17 15 17 16 17 19 16 12 18 16 14 16 17 18 17 16 17 19 16 19 15 19 16 15 16 15 15 16 16 15 16 15 14 16 18 18 15 15 18 17 16 16 17 13 17 16 14 17 15 20 17 17 16 15 18 18 16 16 15 17 15 14 11 15 15 14 16 15 13 18 18 18 13 17 14 16 14 18 15 11 14 19 15 17 13 18 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub152.2.gct' ..

	processing file 'outputprefix.expclu.sub152.3.gct' ..

	processing file 'outputprefix.expclu.sub152.4.gct' ..

	processing file 'outputprefix.expclu.sub152.5.gct' ..

	processing file 'outputprefix.expclu.sub152.6.gct' ..

	processing file 'outputprefix.expclu.sub152.7.gct' ..

	processing file 'outputprefix.expclu.sub152.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub152.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1539>
Subject: Job 7965614: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/512385/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/512385/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1706> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1539>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/512386> was used as the working directory.
Started at Fri Apr 25 16:14:57 2014
Results reported at Fri Apr 25 16:15:23 2014

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/512385/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     29.37 sec.
    Max Memory :       261 MB
    Max Swap   :      2164 MB

    Max Processes  :         3
    Max Threads    :        23

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
