Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_mirnaTopgenesforCluster1.expfile	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	OV-TP.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	outputprefix.expclu.sub454.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
GDAC_selectBestcluster3.inputallexp	OV-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00279:32	miR_Clustering_Consensus_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_OV-TP.miR_Clustering_Consensus.Level_4.2014041600.0.0	yes
