patient	chr	start	end	type	gene	Protein_Change	n_cos
PRAD-CH-5772-TP	2	209113112	209113112	Missense_Mutation	IDH1	p.R132H	1492
PRAD-EJ-7125-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132G	1492
PRAD-G9-7523-TP	2	209113112	209113112	Missense_Mutation	IDH1	p.R132H	1492
PRAD-KK-A6E7-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132C	1492
PRAD-HC-7230-TP	17	7577538	7577538	Missense_Mutation	TP53	p.R248Q	1009
PRAD-HC-A631-TP	17	7577538	7577538	Missense_Mutation	TP53	p.R248Q	1009
PRAD-QU-A6IN-TP	3	178952085	178952085	Missense_Mutation	PIK3CA	p.H1047R	977
PRAD-J4-A67L-TP	17	7577536	7577536	Missense_Mutation	TP53	p.R249G	866
PRAD-G9-6499-TP	17	7578404	7578404	Missense_Mutation	TP53	p.C176R	865
PRAD-EJ-5507-TP	17	7578406	7578406	Missense_Mutation	TP53	p.R175H	722
PRAD-KK-A6DY-TP	17	7578406	7578406	Missense_Mutation	TP53	p.R175H	722
PRAD-CH-5752-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	p.S45P	660
PRAD-EJ-8469-TP	3	178936091	178936091	Missense_Mutation	PIK3CA	p.E545K	654
PRAD-EJ-A65D-TP	3	41266124	41266124	Missense_Mutation	CTNNB1	p.T41A	527
PRAD-HC-7738-TP	3	41266124	41266124	Missense_Mutation	CTNNB1	p.T41A	527
PRAD-EJ-5521-TP	17	7577548	7577548	Missense_Mutation	TP53	p.G245S	399
PRAD-HC-A632-TP	17	7577548	7577548	Missense_Mutation	TP53	p.G245S	399
PRAD-KC-A4BL-TP	17	7577548	7577548	Missense_Mutation	TP53	p.G245S	399
PRAD-HC-7212-TP	3	41266112	41266112	Missense_Mutation	CTNNB1	p.S37A	371
PRAD-EJ-5514-TP	17	7577094	7577094	Missense_Mutation	TP53	p.R282W	370
PRAD-QU-A6IM-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	p.S33A	370
PRAD-HC-7081-TP	3	178936083	178936083	Missense_Mutation	PIK3CA	p.E542A	335
PRAD-EJ-5525-TP	3	178936082	178936082	Missense_Mutation	PIK3CA	p.E542K	334
PRAD-EJ-5494-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
PRAD-EJ-5525-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32H	258
PRAD-HC-8262-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32Y	258
PRAD-HI-7168-TP	11	533874	533874	Missense_Mutation	HRAS	p.Q61R	208
PRAD-HC-7231-TP	3	178936094	178936094	Missense_Mutation	PIK3CA	p.Q546K	198
PRAD-EJ-8472-TP	17	7578461	7578461	Missense_Mutation	TP53	p.V157F	156
PRAD-G9-7510-TP	17	7578271	7578271	Missense_Mutation	TP53	p.H193R	126
PRAD-CH-5761-TP	17	7578526	7578526	Missense_Mutation	TP53	p.C135F	116
PRAD-J9-A52C-TP	9	21971120	21971120	Nonsense_Mutation	CDKN2A	p.R80*	89
PRAD-G9-7521-TP	17	7577085	7577085	Missense_Mutation	TP53	p.E285K	87
PRAD-HC-7742-TP	7	140453122	140453133	In_Frame_Del	BRAF	p.KSRWS601del	85
PRAD-HC-7742-TP	17	7578222	7578223	Frame_Shift_Del	TP53	p.R209fs	69
PRAD-HI-7171-TP	17	7577566	7577566	Missense_Mutation	TP53	p.N239D	69
PRAD-EJ-A65E-TP	7	140481402	140481402	Missense_Mutation	BRAF	p.G469A	47
PRAD-G9-6498-TP	7	140481402	140481402	Missense_Mutation	BRAF	p.G469A	47
PRAD-KK-A6E7-TP	10	89717715	89717716	Frame_Shift_Ins	PTEN	p.S247fs	42
PRAD-G9-6366-TP	10	89717713	89717715	In_Frame_Del	PTEN	p.PL246del	41
PRAD-KC-A4BN-TP	7	140453145	140453145	Missense_Mutation	BRAF	p.L597R	31
PRAD-EJ-7791-TP	10	89720811	89720812	Frame_Shift_Ins	PTEN	p.K321fs	28
PRAD-HC-7078-TP	3	178921553	178921553	Missense_Mutation	PIK3CA	p.N345K	27
PRAD-HC-7081-TP	3	178921552	178921552	Missense_Mutation	PIK3CA	p.N345I	27
PRAD-HC-7213-TP	17	7578555	7578555	Splice_Site	TP53		26
PRAD-EJ-5526-TP	3	178927980	178927980	Missense_Mutation	PIK3CA	p.C420R	21
PRAD-HC-A6AN-TP	3	178916936	178916936	Missense_Mutation	PIK3CA	p.R108H	18
PRAD-FC-7961-TP	10	89717695	89717696	Frame_Shift_Ins	PTEN	p.*241fs	17
PRAD-EJ-7315-TP	17	7574018	7574018	Missense_Mutation	TP53	p.R337C	16
PRAD-EJ-A65D-TP	3	178916876	178916876	Missense_Mutation	PIK3CA	p.R88Q	16
PRAD-EJ-A46G-TP	3	10191575	10191575	Missense_Mutation	VHL	p.D190Y	13
PRAD-HC-7230-TP	10	89692849	89692849	Nonsense_Mutation	PTEN	p.W111*	13
PRAD-KK-A59X-TP	18	48591888	48591888	Missense_Mutation	SMAD4	p.D351Y	12
PRAD-HC-7233-TP	5	114466299	114466299	Missense_Mutation	TRIM36	p.V596I	10
PRAD-KK-A6E1-TP	10	89692959	89692960	Frame_Shift_Ins	PTEN	p.A148fs	10
PRAD-CH-5737-TP	10	89692871	89692871	Missense_Mutation	PTEN	p.V119F	9
PRAD-HC-7212-TP	10	89720833	89720833	Frame_Shift_Del	PTEN	p.A328fs	8
PRAD-HC-A6AL-TP	10	89692968	89692968	Frame_Shift_Del	PTEN	p.A151fs	8
PRAD-KK-A59V-TP	13	48947629	48947629	Splice_Site	RB1		7
PRAD-EJ-7781-TP	17	7576890	7576890	Frame_Shift_Del	TP53	p.K321fs	5
PRAD-EJ-A65D-TP	10	89653846	89653846	Missense_Mutation	PTEN	p.N48K	4
PRAD-HC-7819-TP	5	112175599	112175600	Frame_Shift_Ins	APC	p.N1437fs	4
PRAD-KK-A59X-TP	18	48591901	48591901	Missense_Mutation	SMAD4	p.D355V	4
PRAD-CH-5740-TP	10	89720826	89720826	Missense_Mutation	PTEN	p.D326G	3
PRAD-CH-5753-TP	22	24145587	24145587	Missense_Mutation	SMARCB1	p.D211E	3
PRAD-CH-5791-TP	10	89690802	89690802	Splice_Site	PTEN		3
PRAD-CH-5737-TP	11	108205768	108205768	Missense_Mutation	ATM	p.G2695S	2
PRAD-CH-5751-TP	19	16003198	16003198	Missense_Mutation	CYP4F2	p.R149Q	2
PRAD-EJ-7315-TP	18	48591894	48591894	Missense_Mutation	SMAD4	p.Y353N	2
PRAD-J9-A52E-TP	23	15574250	15574250	Missense_Mutation	BMX	p.R670W	2
PRAD-KC-A4BV-TP	10	89711886	89711887	Frame_Shift_Ins	PTEN	p.Q169fs	2
PRAD-CH-5772-TP	10	50835688	50835688	Missense_Mutation	CHAT	p.R241H	1
PRAD-CH-5794-TP	22	30035110	30035110	Missense_Mutation	NF2	p.P91L	1
PRAD-EJ-5511-TP	1	210977309	210977309	Splice_Site	KCNH1	p.K527_splice	1
PRAD-EJ-5511-TP	11	108192065	108192065	Missense_Mutation	ATM	p.E2164K	1
PRAD-EJ-5518-TP	2	28117448	28117448	Nonsense_Mutation	BRE	p.R9*	1
PRAD-EJ-5525-TP	18	48604690	48604690	Missense_Mutation	SMAD4	p.S504R	1
PRAD-EJ-5525-TP	17	7578242	7578242	Frame_Shift_Del	TP53	p.V203fs	1
PRAD-EJ-5531-TP	16	20554289	20554289	Missense_Mutation	ACSM2B	p.P486S	1
PRAD-EJ-7315-TP	11	7981685	7981685	Missense_Mutation	NLRP10	p.R492C	1
PRAD-EJ-7317-TP	11	44100335	44100335	Splice_Site	ACCS		1
PRAD-EJ-7782-TP	21	47665033	47665033	Missense_Mutation	MCM3AP	p.V1576I	1
PRAD-FC-A4JI-TP	1	2082320	2082320	Missense_Mutation	PRKCZ	p.R77H	1
PRAD-G9-7525-TP	2	238289893	238289893	Missense_Mutation	COL6A3	p.S521L	1
PRAD-HC-8216-TP	17	7578509	7578509	Missense_Mutation	TP53	p.C141G	1
PRAD-HC-A48F-TP	17	7578509	7578509	Missense_Mutation	TP53	p.C141G	1
PRAD-J9-A52C-TP	17	36895857	36895857	Missense_Mutation	PCGF2	p.R64Q	1
PRAD-KK-A59V-TP	2	61175177	61175177	Splice_Site	PUS10		1
PRAD-KK-A59V-TP	15	84581902	84581902	Missense_Mutation	ADAMTSL3	p.R587C	1
PRAD-KK-A59V-TP	10	89550131	89550132	Frame_Shift_Del	ATAD1	p.T106fs	1
PRAD-KK-A6E2-TP	10	48389662	48389662	Missense_Mutation	RBP3	p.E406K	1
PRAD-KK-A6E4-TP	6	42204105	42204106	In_Frame_Ins	TRERF1	p.988_988A>GT	1
PRAD-KK-A6E8-TP	16	68855984	68855984	Missense_Mutation	CDH1	p.R598G	1
