CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations)
Bladder Urothelial Carcinoma (Primary solid tumor)
16 April 2014
|
analyses__2014_04_16
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2014):
CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations).
Broad Institute of MIT and Harvard.
doi:10.7908/C1FT8JM3
Overview
Introduction
Summary
There are 24747 mutations identified by MuTect and 500 mutations with significant functional impact at BHFDR <= 0.25.
Results
Top Mutations
Table 1.
Get Full Table
Top mutations with significant funcational impact.
MutationID: mutation seen in sample.
Mutation: mutation seen in gene and AA variant.
CHASM: CHASM score.
BHFDR: Benjamini-Hochberg False Discovery Rate.
| MutationID | Mutation | CHASM | PValue | BHFDR |
|---|---|---|---|---|
| TCGA-BL-A0C8-01A-11D-A10S-08 | NM_004439.5_M901K | 0.2 | 0 | 0.05 |
| TCGA-BL-A13I-01A-11D-A13W-08 | ENST00000379863_N75S | 0.19 | 0 | 0.05 |
| TCGA-BL-A13J-01A-11D-A10S-08 | NM_001126112.1_Y220C | 0.014 | 0 | 0.05 |
| TCGA-BL-A3JM-01A-12D-A21A-08 | NM_001126112.1_R248P | 0.002 | 0 | 0.05 |
| TCGA-BL-A3JM-01A-12D-A21A-08 | NM_001904.3_S37C | 0.062 | 0 | 0.05 |
Methods & Data
Copyright © 2014
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.