CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations)
Colorectal Adenocarcinoma (Primary solid tumor)
16 April 2014
|
analyses__2014_04_16
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2014):
CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations).
Broad Institute of MIT and Harvard.
doi:10.7908/C19C6W14
Overview
Introduction
Summary
There are 658 mutations identified by MuTect and 20 mutations with significant functional impact at BHFDR <= 0.25.
Results
Top Mutations
Table 1.
Get Full Table
Top mutations with significant funcational impact.
MutationID: mutation seen in sample.
Mutation: mutation seen in gene and AA variant.
CHASM: CHASM score.
BHFDR: Benjamini-Hochberg False Discovery Rate.
| MutationID | Mutation | CHASM | PValue | BHFDR |
|---|---|---|---|---|
| TCGA-AA-3811-01A-01W-0995-10 | NM_000153.2_T608I | 0.17 | 0 | 0.05 |
| TCGA-AA-3811-01A-01W-0995-10 | NM_000153.2_T608I | 0.17 | 0 | 0.05 |
| TCGA-AA-3947-01A-01W-0995-10 | NM_002473.4_E773K | 0.22 | 0 | 0.05 |
| TCGA-AA-3947-01A-01W-0995-10 | NM_002473.4_E773K | 0.22 | 0 | 0.05 |
| TCGA-AA-A010-01A-01W-A00E-09 | NM_005346.4_G75D | 0.19 | 0 | 0.05 |
Methods & Data
Copyright © 2014
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.