CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations)
Kidney Renal Papillary Cell Carcinoma (Primary solid tumor)
16 April 2014
|
analyses__2014_04_16
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2014):
CHASM 1.0.5 (Cancer-Specific High-throughput Annotation of Somatic Mutations).
Broad Institute of MIT and Harvard.
doi:10.7908/C1XW4HFZ
Overview
Introduction
Summary
There are 19022 mutations identified by MuTect and 256 mutations with significant functional impact at BHFDR <= 0.25.
Results
Top Mutations
Table 1.
Get Full Table
Top mutations with significant funcational impact.
MutationID: mutation seen in sample.
Mutation: mutation seen in gene and AA variant.
CHASM: CHASM score.
BHFDR: Benjamini-Hochberg False Discovery Rate.
| MutationID | Mutation | CHASM | PValue | BHFDR |
|---|---|---|---|---|
| TCGA-A4-7287-01A-11D-2136-08 | NM_001126112.1_K164N | 0.018 | 0 | 0.05 |
| TCGA-A4-8312-01A-11D-2396-08 | NM_033360.2_G12D | 0.082 | 0 | 0.05 |
| TCGA-A4-8515-01A-11D-2396-08 | NM_003359.3_S72P | 0.092 | 0 | 0.05 |
| TCGA-A4-8630-01A-11D-2396-08 | NM_001497.3_R187Q | 0.13 | 0 | 0.05 |
| TCGA-A4-A48D-01A-11D-A25F-10 | NM_015458.3_R500H | 0.13 | 0 | 0.05 |
Methods & Data
Copyright © 2014
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.