		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.3	287 (50%)	282	0.42741	1	0.48502	1	0.12293	1	0.07902	1	9.7188e-07	0.000892	0.1942	1	0.11213	1	0.80806	1	0.5487	1	0.054708	1	0.08385	1	0.1016	1	0.065208	1	0.59989	1
amp_1q21.3	361 (63%)	208	0.26626	1	0.34166	1	0.63325	1	0.15363	1	3.6969e-11	3.47e-08	0.0001231	0.11	0.074999	1	0.020764	1	0.65819	1	0.3495	1	0.83952	1	0.8884	1	0.73708	1	0.82716	1
amp_1q42.2	314 (55%)	255	0.023225	1	0.028808	1	0.87286	1	0.0071757	1	1.173e-09	1.09e-06	5.4163e-05	0.0485	0.25234	1	0.21608	1	0.50065	1	0.37446	1	0.26698	1	0.35132	1	0.35742	1	0.26424	1
amp_2p23.2	245 (43%)	324	0.32705	1	0.44066	1	0.75018	1	0.010572	1	1.1934e-08	1.11e-05	0.0043789	1	0.1436	1	0.44438	1	0.031771	1	0.81369	1	0.91857	1	0.12692	1	0.9302	1	0.71001	1
amp_2q31.2	259 (46%)	310	0.11314	1	0.094175	1	0.03297	1	0.060366	1	4.1836e-09	3.89e-06	0.007844	1	0.048608	1	0.31665	1	0.1522	1	0.42492	1	0.2868	1	0.39694	1	0.08213	1	0.074353	1
amp_3q26.2	476 (84%)	93	0.0090939	1	0.004886	1	0.80893	1	0.3479	1	1.8487e-10	1.73e-07	0.034723	1	0.40792	1	0.44484	1	0.0075878	1	0.014744	1	0.12526	1	0.39324	1	0.47604	1	0.64314	1
amp_4p16.3	157 (28%)	412	1	1	0.27906	1	0.029283	1	0.60698	1	0.00029229	0.257	0.027426	1	0.27552	1	0.7467	1	0.68955	1	0.40208	1	0.62419	1	0.62056	1	0.74343	1	0.45595	1
amp_4q13.3	110 (19%)	459	0.94456	1	0.90469	1	0.34375	1	0.10604	1	0.00032229	0.282	0.52762	1	0.52517	1	0.2254	1	0.13011	1	0.89526	1	1	1	0.10385	1	0.86558	1	0.52368	1
amp_5p15.33	304 (53%)	265	1	1	0.9649	1	0.62519	1	0.60579	1	8.6691e-07	0.000797	0.099018	1	0.97594	1	0.28685	1	0.24906	1	0.96293	1	0.0246	1	0.54424	1	0.10546	1	0.50039	1
amp_6p22.3	300 (53%)	269	0.17261	1	0.046234	1	0.27542	1	0.10918	1	1.0672e-06	0.000979	0.01231	1	0.072297	1	0.049911	1	0.85166	1	0.093415	1	0.37279	1	0.4444	1	0.16963	1	0.27697	1
amp_7q36.3	311 (55%)	258	0.10536	1	0.091021	1	0.35161	1	0.73125	1	2.8193e-05	0.0253	0.45664	1	0.031387	1	0.1551	1	0.83678	1	0.55614	1	0.21284	1	0.17407	1	0.022716	1	0.26424	1
amp_8p11.21	207 (36%)	362	0.10754	1	0.023535	1	0.10015	1	0.13302	1	1.9087e-05	0.0173	0.015866	1	0.010835	1	0.28222	1	0.28111	1	0.16706	1	0.76317	1	0.75774	1	0.6739	1	0.86897	1
amp_8q24.21	451 (79%)	118	1.3184e-07	0.000122	2.3033e-05	0.0208	0.25056	1	0.0024369	1	1.9649e-16	1.87e-13	0.0044509	1	0.98209	1	0.65809	1	4.1772e-07	0.000385	2.6338e-05	0.0237	0.16089	1	0.037731	1	0.061281	1	0.071051	1
amp_10p15.3	246 (43%)	323	0.82149	1	0.70988	1	0.055072	1	0.24098	1	2.0596e-12	1.95e-09	0.0005335	0.466	0.49093	1	0.3366	1	0.23327	1	0.42105	1	0.37272	1	0.88275	1	0.59964	1	0.63309	1
amp_10q22.3	181 (32%)	388	0.4721	1	0.64531	1	0.54132	1	0.15985	1	0.21481	1	0.75108	1	0.63553	1	0.96201	1	0.20144	1	0.57043	1	0.26617	1	0.23594	1	0.90464	1	0.40648	1
amp_11q14.1	253 (44%)	316	0.0052299	1	0.045435	1	0.76692	1	0.46668	1	6.611e-07	0.000608	0.0024507	1	0.38199	1	0.24972	1	0.0042186	1	0.0076436	1	0.13285	1	0.72233	1	0.21519	1	1	1
amp_12p13.33	323 (57%)	246	0.023451	1	0.1224	1	0.26294	1	0.0080109	1	1.1348e-08	1.05e-05	0.00021342	0.189	0.1904	1	0.47224	1	0.014798	1	0.16359	1	0.53129	1	1	1	0.82841	1	0.48191	1
amp_12p12.1	306 (54%)	263	0.12949	1	0.10984	1	0.89905	1	0.063609	1	5.628e-12	5.32e-09	3.2202e-05	0.0289	0.62369	1	0.21577	1	0.012326	1	0.10764	1	0.44699	1	0.94413	1	0.71972	1	0.89705	1
amp_14q11.2	146 (26%)	423	0.017105	1	0.036774	1	0.28682	1	0.0010186	0.885	0.038822	1	0.19358	1	0.52867	1	0.39835	1	0.34017	1	0.27022	1	0.29515	1	0.43753	1	0.22051	1	0.26239	1
amp_14q32.33	153 (27%)	416	0.44281	1	0.49697	1	0.19723	1	0.76377	1	0.00026292	0.231	0.28117	1	1	1	0.53663	1	0.16328	1	0.65815	1	0.37172	1	0.62542	1	0.48384	1	0.58882	1
amp_15q26.3	161 (28%)	408	0.085685	1	0.30067	1	0.50358	1	0.8259	1	3.2772e-09	3.05e-06	0.78821	1	0.97938	1	0.30783	1	0.20923	1	0.97687	1	0.15448	1	0.4633	1	0.1619	1	0.49002	1
amp_17q25.3	212 (37%)	357	0.46806	1	0.72597	1	0.9797	1	0.17358	1	0.0022463	1	0.77998	1	0.073369	1	0.065226	1	0.012307	1	0.018682	1	0.32549	1	0.12492	1	0.29546	1	0.1103	1
amp_18q11.2	142 (25%)	427	0.81885	1	0.98508	1	0.95348	1	0.49308	1	1.8251e-05	0.0166	0.0037882	1	0.15009	1	0.25815	1	0.041861	1	0.09141	1	0.14573	1	0.53964	1	0.16949	1	0.2765	1
amp_19p13.12	308 (54%)	261	0.00022899	0.202	2.0051e-07	0.000185	0.037705	1	0.02498	1	1.2739e-11	1.2e-08	2.356e-06	0.00215	0.00031248	0.274	0.0016392	1	0.24142	1	0.31415	1	0.57613	1	0.59783	1	0.98103	1	0.7633	1
amp_19q12	319 (56%)	250	0.12369	1	0.0051381	1	0.029229	1	0.062371	1	1.3826e-27	1.32e-24	4.5555e-10	4.26e-07	0.046767	1	0.6915	1	0.53024	1	0.84301	1	0.34553	1	0.6757	1	0.82715	1	0.49443	1
amp_19q13.2	241 (42%)	328	0.93768	1	0.84363	1	0.65757	1	0.19312	1	1.2564e-11	1.18e-08	9.8378e-05	0.0878	0.44408	1	0.46817	1	0.37065	1	1	1	0.96956	1	0.4328	1	0.70736	1	0.43271	1
amp_20p13	313 (55%)	256	0.46779	1	0.060789	1	0.13999	1	0.035661	1	5.493e-11	5.15e-08	2.2937e-05	0.0207	0.19493	1	0.9831	1	0.081551	1	0.71837	1	0.19024	1	0.84091	1	0.65814	1	0.27935	1
amp_20q11.21	340 (60%)	229	0.0026729	1	0.0024645	1	0.11101	1	0.00025809	0.227	4.3418e-22	4.13e-19	8.5827e-12	8.1e-09	0.13079	1	0.02209	1	0.00025599	0.226	0.50617	1	0.28881	1	0.17344	1	0.73351	1	0.48535	1
amp_20q13.33	393 (69%)	176	0.010407	1	0.020113	1	0.68381	1	0.0037458	1	4.8089e-16	4.56e-13	2.0833e-06	0.00191	0.84293	1	0.49425	1	0.0080437	1	0.8089	1	0.46977	1	0.59505	1	0.69386	1	0.30758	1
amp_22q12.2	89 (16%)	480	0.61512	1	0.57693	1	0.069688	1	0.25903	1	0.0015508	1	0.00069033	0.601	0.97365	1	0.035972	1	0.06298	1	0.1233	1	0.10548	1	0.0095847	1	0.037407	1	0.029915	1
amp_xp11.23	154 (27%)	415	0.66238	1	0.32173	1	0.42509	1	0.34934	1	2.1139e-05	0.0191	0.0017138	1	0.71586	1	0.25178	1	0.44166	1	0.34146	1	0.27271	1	1	1	0.44836	1	0.91713	1
amp_xq28	217 (38%)	352	0.24411	1	0.31042	1	0.56109	1	0.05106	1	0.0011689	1	0.17502	1	0.44971	1	0.72714	1	0.62025	1	0.75846	1	0.87139	1	0.015152	1	0.86799	1	1	1
del_1p36.11	267 (47%)	302	0.73933	1	0.51743	1	0.029195	1	0.39334	1	9.812e-06	0.00895	0.088976	1	0.12426	1	0.21401	1	0.83602	1	0.87105	1	0.22225	1	0.14759	1	0.33798	1	0.15424	1
del_1q41	95 (17%)	474	0.086608	1	0.58904	1	0.30261	1	0.41881	1	3.2299e-07	0.000298	0.1323	1	0.47473	1	0.097035	1	0.26804	1	0.53781	1	0.91312	1	0.65666	1	0.7634	1	0.88418	1
del_2p25.3	120 (21%)	449	0.88263	1	1	1	0.40872	1	0.27864	1	0.2451	1	0.64004	1	0.26408	1	0.13708	1	0.062531	1	0.51808	1	0.8775	1	0.5123	1	0.89293	1	0.6085	1
del_2q22.1	136 (24%)	433	0.10469	1	0.14251	1	0.56811	1	0.15082	1	0.086744	1	0.67205	1	0.60311	1	0.84437	1	0.8944	1	0.31363	1	0.47906	1	0.36913	1	0.41799	1	0.10764	1
del_2q37.3	173 (30%)	396	0.016265	1	0.039294	1	0.75839	1	0.0014925	1	1.1381e-05	0.0104	0.065268	1	0.79836	1	0.99383	1	0.015753	1	0.020931	1	0.01326	1	0.010925	1	0.051973	1	0.021767	1
del_3p26.2	209 (37%)	360	0.14968	1	0.12981	1	0.0057489	1	0.034069	1	1.7773e-05	0.0161	0.00056478	0.493	0.95455	1	0.094867	1	0.0031791	1	0.66503	1	0.62212	1	0.62816	1	0.97089	1	0.026535	1
del_4q22.1	388 (68%)	181	0.052697	1	0.12344	1	1	1	0.0077117	1	0.020387	1	0.22088	1	0.1914	1	0.026384	1	0.072244	1	0.50849	1	0.29927	1	0.0097739	1	0.029197	1	0.15429	1
del_4q34.3	415 (73%)	154	0.05409	1	0.039684	1	0.062901	1	0.024206	1	0.14975	1	0.59552	1	0.66716	1	0.31371	1	0.088586	1	0.02911	1	0.41844	1	0.19934	1	0.16081	1	0.26869	1
del_5q11.2	347 (61%)	222	0.92924	1	0.63541	1	0.64385	1	0.2061	1	1.5627e-08	1.45e-05	0.00032861	0.288	0.73061	1	0.79974	1	0.20714	1	0.17086	1	0.090549	1	0.0019101	1	0.065188	1	0.063275	1
del_5q13.2	412 (72%)	157	0.74464	1	0.63285	1	0.89629	1	0.75987	1	3.5656e-11	3.35e-08	0.1025	1	0.77277	1	0.81648	1	0.51946	1	0.0056285	1	0.15387	1	0.011862	1	0.20991	1	0.16991	1
del_6q27	381 (67%)	188	0.16838	1	0.040689	1	0.25718	1	0.017427	1	4.0901e-10	3.83e-07	2.5821e-05	0.0232	0.45882	1	0.86844	1	1.7468e-05	0.0159	0.34197	1	0.36646	1	0.9062	1	0.33564	1	0.085071	1
del_7p22.1	248 (44%)	321	0.39068	1	0.61069	1	0.76609	1	0.67663	1	1.6871e-13	1.6e-10	0.63129	1	0.80271	1	0.71665	1	0.35034	1	0.13054	1	0.35423	1	0.64333	1	0.70203	1	0.59299	1
del_8p23.3	382 (67%)	187	0.044596	1	0.24242	1	0.57242	1	0.01366	1	6.5581e-12	6.2e-09	0.050602	1	0.888	1	0.52019	1	0.88333	1	0.59724	1	0.2394	1	0.14546	1	0.16665	1	0.36567	1
del_8p21.2	400 (70%)	169	0.043047	1	0.43965	1	0.17829	1	0.0088678	1	3.9482e-09	3.68e-06	0.14533	1	0.87054	1	0.89895	1	0.45824	1	0.20665	1	0.57492	1	0.49662	1	0.90789	1	1	1
del_9p24.3	257 (45%)	312	0.00023684	0.209	0.011869	1	0.61189	1	0.0091127	1	0.038572	1	7.4998e-05	0.067	0.31827	1	0.4479	1	0.071174	1	0.07229	1	0.086378	1	0.16768	1	0.063054	1	0.15666	1
del_9q34.13	337 (59%)	232	0.02828	1	0.036905	1	0.96822	1	0.016465	1	6.0351e-07	0.000556	0.057586	1	0.42123	1	0.37933	1	0.2077	1	1	1	0.034492	1	0.12787	1	0.13108	1	0.07979	1
del_10p15.3	120 (21%)	449	0.17973	1	0.046738	1	0.087446	1	0.092048	1	0.14863	1	0.34731	1	0.28435	1	0.045356	1	0.015383	1	0.057165	1	0.24593	1	0.32736	1	0.1137	1	0.26925	1
del_10q24.2	246 (43%)	323	0.0019688	1	0.00012383	0.11	0.0062218	1	0.068116	1	2.3668e-05	0.0213	0.0015559	1	0.011462	1	9.2118e-05	0.0823	0.4373	1	0.43904	1	0.0018677	1	0.35132	1	0.010636	1	0.0089752	1
del_11p15.5	338 (59%)	231	0.10832	1	0.44184	1	0.60211	1	0.031395	1	5.2217e-10	4.88e-07	0.0074102	1	0.93689	1	0.61563	1	0.70425	1	0.2497	1	0.10678	1	0.029904	1	0.15488	1	0.33028	1
del_11q25	195 (34%)	374	0.70855	1	0.64682	1	0.17326	1	0.3562	1	0.14759	1	0.44446	1	0.31984	1	0.1763	1	0.92824	1	0.8659	1	0.63509	1	0.18769	1	0.67597	1	0.2975	1
del_12q24.33	217 (38%)	352	0.0010389	0.902	0.00020177	0.179	0.16325	1	0.089147	1	3.9495e-09	3.68e-06	0.01951	1	0.29884	1	0.33534	1	0.051415	1	0.0019829	1	0.015193	1	0.0069466	1	0.018451	1	0.011616	1
del_13q14.2	358 (63%)	211	0.010235	1	0.020398	1	0.62079	1	0.61617	1	1.4448e-06	0.00132	2.3367e-05	0.0211	0.0019178	1	0.0012467	1	0.099367	1	0.23554	1	0.36554	1	0.86781	1	0.44635	1	0.63368	1
del_14q23.3	299 (53%)	270	0.064323	1	0.52647	1	0.65068	1	0.76753	1	0.00012257	0.109	0.73202	1	0.22238	1	0.28486	1	0.855	1	0.19643	1	0.89129	1	0.65449	1	0.70845	1	0.48195	1
del_15q15.1	360 (63%)	209	0.026514	1	0.0097023	1	0.02129	1	0.0060425	1	1.103e-11	1.04e-08	7.0557e-06	0.00644	0.1598	1	0.071387	1	0.010694	1	0.84378	1	0.39745	1	0.63617	1	0.19984	1	0.19085	1
del_16p13.3	307 (54%)	262	0.60155	1	0.11994	1	0.27581	1	0.61537	1	0.053532	1	0.41812	1	0.82516	1	0.25066	1	0.35728	1	0.55582	1	0.22105	1	0.86307	1	0.11019	1	0.8285	1
del_16q22.1	453 (80%)	116	0.49637	1	0.73	1	0.031617	1	0.89195	1	0.00019338	0.172	0.63747	1	0.68953	1	0.33071	1	0.21849	1	0.18609	1	0.31239	1	0.097633	1	0.060337	1	0.12023	1
del_16q23.1	444 (78%)	125	0.11018	1	0.22949	1	0.10055	1	0.39426	1	1.0699e-05	0.00975	0.53578	1	0.80497	1	0.85978	1	0.27845	1	0.29801	1	0.057675	1	0.024932	1	0.040535	1	0.030094	1
del_17p12	483 (85%)	86	0.14364	1	0.24421	1	0.58727	1	0.60715	1	0.73734	1	0.31882	1	0.90203	1	0.26905	1	0.15035	1	0.40269	1	0.51019	1	0.51057	1	0.47107	1	0.77516	1
del_17q11.2	466 (82%)	103	0.92268	1	0.21631	1	0.7217	1	0.47063	1	0.00058111	0.507	0.0028613	1	0.76339	1	0.066981	1	0.36819	1	0.44384	1	0.14619	1	0.495	1	0.02644	1	0.37675	1
del_18q23	377 (66%)	192	0.97993	1	0.9919	1	0.14822	1	0.4062	1	0.015535	1	0.39567	1	0.32968	1	0.17048	1	0.12821	1	0.43536	1	0.47439	1	0.5438	1	0.075404	1	0.53782	1
del_19p13.3	502 (88%)	67	0.1559	1	0.0091677	1	0.82341	1	0.46179	1	0.00063353	0.552	0.017352	1	0.61616	1	0.27833	1	0.3214	1	0.016283	1	0.47848	1	0.80458	1	0.43549	1	0.90868	1
del_19q13.33	295 (52%)	274	0.00021672	0.192	0.0001497	0.133	0.04453	1	0.18822	1	0.097818	1	0.0026921	1	0.02891	1	0.18115	1	0.0068731	1	0.058394	1	0.32244	1	0.15914	1	0.29749	1	0.46905	1
del_19q13.43	279 (49%)	290	0.011411	1	0.0014636	1	0.096567	1	0.16297	1	0.0027893	1	2.7554e-05	0.0247	0.17417	1	0.35557	1	0.47848	1	0.12986	1	0.51962	1	0.50533	1	0.36539	1	0.68167	1
del_21q22.3	224 (39%)	345	0.36544	1	0.47168	1	0.69732	1	0.24641	1	0.80826	1	0.26299	1	0.65141	1	0.64223	1	0.24915	1	0.37317	1	0.81885	1	0.71159	1	0.19746	1	0.50242	1
del_22q13.32	495 (87%)	74	0.15937	1	0.07637	1	0.022628	1	0.069972	1	0.0053264	1	0.10118	1	0.10219	1	0.41075	1	0.10308	1	0.26997	1	0.030962	1	0.35073	1	0.027439	1	0.63547	1
del_xp21.1	350 (62%)	219	0.3977	1	0.65994	1	0.097141	1	0.80191	1	0.12427	1	0.02048	1	0.45386	1	0.060525	1	0.87333	1	0.37697	1	0.97395	1	0.68471	1	0.85442	1	0.7256	1
