
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_mergedClustering/broadinstitute.org/cancer.genome.analysis/10572/1/merger_clustering.R")
> result <- main("-w/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/CESC-TP/10005796/GDAC_CNMFselectcluster_10007812/CESC-TP.bestclus.txt", "-y/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/CESC-TP/10667465/GDAC_selectBestcluster_10631809/CESC-TP.bestclus.txt", "-g/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/CESC-TP/10008036/GDAC_CNMFselectcluster_10009542/CESC-TP.bestclus.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/CESC-TP/10005800/GDAC_CNMFselectcluster_10011089/CESC-TP.bestclus.txt", "-iCESC-TP", "-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/CESC-TP/10005798/GDAC_CNMFselectcluster_10007687/CESC-TP.bestclus.txt", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/CESC-TP/10667463/GDAC_selectBestcluster_10631805/CESC-TP.bestclus.txt", "-n/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/CESC-TP/10005793/GDAC_CNMFselectcluster_10007626/CESC-TP.bestclus.txt", "-p/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/CESC-TP/10667464/GDAC_selectBestcluster_10631860/CESC-TP.bestclus.txt")
[1] "**** cluster demension ***"
[1] "dim(together):"
[1] 256   9
> q(save="no")
