patient	chr	start	end	type	gene	n_cos
LIHC-MI-A75C-TP	12	25398284	25398284	Missense_Mutation	KRAS	14604
LIHC-DD-A3A4-TP	12	25398281	25398281	Missense_Mutation	KRAS	2258
LIHC-BC-A10Q-TP	2	209113113	209113113	Missense_Mutation	IDH1	1492
LIHC-CC-5260-TP	2	209113113	209113113	Missense_Mutation	IDH1	1492
LIHC-DD-A4NA-TP	2	209113113	209113113	Missense_Mutation	IDH1	1492
LIHC-BW-A5NP-TP	1	115256530	115256530	Missense_Mutation	NRAS	1298
LIHC-ED-A7PZ-TP	17	7577531	7577538	Frame_Shift_Del	TP53	1009
LIHC-UB-A7MC-TP	17	7577538	7577538	Missense_Mutation	TP53	1009
LIHC-BC-A216-TP	17	7577539	7577539	Missense_Mutation	TP53	986
LIHC-DD-A3A1-TP	3	178952085	178952085	Missense_Mutation	PIK3CA	977
LIHC-G3-A7M8-TP	3	178952085	178952085	Missense_Mutation	PIK3CA	977
LIHC-BC-A217-TP	17	7577120	7577120	Missense_Mutation	TP53	890
LIHC-BC-A10U-TP	3	41266137	41266137	Missense_Mutation	CTNNB1	664
LIHC-DD-A4NK-TP	3	41266137	41266137	Missense_Mutation	CTNNB1	664
LIHC-O8-A75V-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	660
LIHC-RG-A7D4-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	660
LIHC-BC-A112-TP	3	178936091	178936091	Missense_Mutation	PIK3CA	654
LIHC-DD-A11D-TP	3	41266124	41266124	Missense_Mutation	CTNNB1	527
LIHC-EP-A26S-TP	3	41266125	41266125	Missense_Mutation	CTNNB1	518
LIHC-KR-A7K0-TP	3	41266112	41266112	Missense_Mutation	CTNNB1	371
LIHC-DD-A116-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	370
LIHC-DD-A39V-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	370
LIHC-EP-A12J-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	370
LIHC-G3-A3CK-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	370
LIHC-G3-A6UC-TP	3	41266100	41266100	Missense_Mutation	CTNNB1	370
LIHC-BW-A5NQ-TP	3	41266113	41266113	Missense_Mutation	CTNNB1	360
LIHC-CC-A3M9-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-CC-A3MB-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-CC-A5UE-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-CC-A7II-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-DD-A114-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-ED-A7XP-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-G3-A25U-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-QA-A7B7-TP	17	7577534	7577534	Missense_Mutation	TP53	360
LIHC-UB-A7MC-TP	3	41266113	41266113	Missense_Mutation	CTNNB1	360
LIHC-CC-A5UD-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	349
LIHC-ED-A7XP-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	349
LIHC-FV-A4ZQ-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	349
LIHC-CC-5259-TP	3	178936082	178936082	Missense_Mutation	PIK3CA	334
LIHC-CC-A7IK-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-CC-A7IL-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-DD-A73D-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-DD-A73E-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-ED-A7PZ-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-EP-A2KC-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-G3-A5SL-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-MI-A75H-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-RC-A6M4-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	311
LIHC-DD-A4NF-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	258
LIHC-EP-A3RK-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	258
LIHC-G3-A25S-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	258
LIHC-UB-A7MD-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	258
LIHC-DD-A3A0-TP	17	7577557	7577557	Missense_Mutation	TP53	222
LIHC-DD-A118-TP	20	57484420	57484420	Missense_Mutation	GNAS	210
LIHC-FV-A3R3-TP	20	57484420	57484420	Missense_Mutation	GNAS	210
LIHC-G3-A7M7-TP	20	57484420	57484420	Missense_Mutation	GNAS	210
LIHC-BC-A10U-TP	17	7578211	7578211	Missense_Mutation	TP53	198
LIHC-ED-A459-TP	17	7578190	7578190	Missense_Mutation	TP53	188
LIHC-CC-A7IG-TP	17	7578188	7578188	Nonsense_Mutation	TP53	186
LIHC-DD-A3A3-TP	3	41266104	41266104	Missense_Mutation	CTNNB1	172
LIHC-EP-A3RK-TP	3	41266104	41266104	Missense_Mutation	CTNNB1	172
LIHC-G3-A3CJ-TP	3	41266104	41266104	Missense_Mutation	CTNNB1	172
LIHC-CC-5263-TP	17	7577107	7577107	Nonsense_Mutation	TP53	156
LIHC-CC-A5UD-TP	17	7578461	7578461	Missense_Mutation	TP53	156
LIHC-CC-A7IJ-TP	17	7578461	7578461	Missense_Mutation	TP53	156
LIHC-DD-A1EG-TP	17	7578460	7578460	Missense_Mutation	TP53	144
LIHC-DD-A11A-TP	17	7578454	7578455	In_Frame_Ins	TP53	137
LIHC-FV-A3I1-TP	17	7578271	7578271	Missense_Mutation	TP53	126
LIHC-FV-A4ZQ-TP	17	7577141	7577141	Missense_Mutation	TP53	126
LIHC-G3-A25Z-TP	17	7578271	7578271	Missense_Mutation	TP53	126
LIHC-G3-A7M9-TP	17	7578264	7578270	Frame_Shift_Del	TP53	126
LIHC-MI-A75G-TP	17	7578271	7578271	Missense_Mutation	TP53	126
LIHC-BW-A5NO-TP	17	7577142	7577142	Missense_Mutation	TP53	118
LIHC-DD-A39Y-TP	17	7578457	7578457	Missense_Mutation	TP53	114
LIHC-DD-A3A7-TP	17	7578525	7578525	Nonsense_Mutation	TP53	114
LIHC-MI-A75I-TP	17	7578457	7578457	Missense_Mutation	TP53	114
LIHC-BC-A10R-TP	17	7578524	7578524	Nonsense_Mutation	TP53	105
LIHC-DD-A1EL-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	98
LIHC-DD-A4NI-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	98
LIHC-G3-A3CK-TP	3	41266110	41266110	Missense_Mutation	CTNNB1	98
LIHC-FV-A3R2-TP	17	7577022	7577022	Nonsense_Mutation	TP53	89
LIHC-ED-A82E-TP	15	90631838	90631838	Missense_Mutation	IDH2	83
LIHC-G3-A25T-TP	15	90631837	90631837	Missense_Mutation	IDH2	83
LIHC-BD-A3EP-TP	17	7578478	7578478	Missense_Mutation	TP53	82
LIHC-RG-A7D4-TP	17	7577114	7577114	Missense_Mutation	TP53	77
LIHC-G3-A7M6-TP	17	7578205	7578205	Missense_Mutation	TP53	72
LIHC-UB-A7MF-TP	17	7578205	7578205	Missense_Mutation	TP53	72
LIHC-BW-A5NQ-TP	17	7578275	7578275	Nonsense_Mutation	TP53	62
LIHC-DD-A1EL-TP	17	7578449	7578449	Missense_Mutation	TP53	48
LIHC-G3-A25V-TP	17	7577531	7577531	Frame_Shift_Del	TP53	48
LIHC-FV-A4ZP-TP	17	7577082	7577082	Missense_Mutation	TP53	44
LIHC-ED-A7XO-TP	17	7577511	7577511	Missense_Mutation	TP53	41
LIHC-RC-A7SB-TP	17	7577509	7577509	Missense_Mutation	TP53	41
LIHC-ED-A7XP-TP	9	21971111	21971111	Missense_Mutation	CDKN2A	37
LIHC-CC-5262-TP	17	7578454	7578454	Missense_Mutation	TP53	34
LIHC-DD-A1EB-TP	17	7578554	7578554	Missense_Mutation	TP53	34
LIHC-BC-A10S-TP	9	21971209	21971209	Splice_Site	CDKN2A	31
LIHC-BD-A2L6-TP	10	89720811	89720812	Frame_Shift_Ins	PTEN	28
LIHC-BC-A3KG-TP	17	7577565	7577565	Missense_Mutation	TP53	27
LIHC-CC-A1HT-TP	17	7578555	7578555	Splice_Site	TP53	26
LIHC-BC-A69I-TP	3	41266107	41266107	Missense_Mutation	CTNNB1	24
LIHC-DD-A1EA-TP	3	41266093	41266107	In_Frame_Del	CTNNB1	24
LIHC-BC-A10U-TP	3	41266132	41266133	Frame_Shift_Ins	CTNNB1	23
LIHC-DD-A4NE-TP	10	89717712	89717712	Missense_Mutation	PTEN	23
LIHC-CC-A7IK-TP	17	7576868	7576897	In_Frame_Del	TP53	20
LIHC-DD-A3A6-TP	22	30038257	30038258	Nonsense_Mutation	NF2	20
LIHC-DD-A1EI-TP	17	7578419	7578419	Nonsense_Mutation	TP53	15
LIHC-CC-A3MA-TP	17	7579349	7579349	Missense_Mutation	TP53	13
LIHC-CC-A7IH-TP	3	41266127	41266150	In_Frame_Del	CTNNB1	13
LIHC-G3-A3CJ-TP	17	7578503	7578503	Missense_Mutation	TP53	13
LIHC-K7-A5RG-TP	17	7576928	7576928	Splice_Site	TP53	13
LIHC-G3-A6UC-TP	10	89653856	89653857	Nonsense_Mutation	PTEN	9
LIHC-FV-A23B-TP	10	89692941	89692941	Missense_Mutation	PTEN	8
LIHC-BC-A5W4-TP	17	7577111	7577111	Missense_Mutation	TP53	7
LIHC-CC-A5UD-TP	10	89712017	89712017	Splice_Site	PTEN	7
LIHC-DD-A4NE-TP	3	178952100	178952100	Missense_Mutation	PIK3CA	7
LIHC-G3-A3CK-TP	5	67591136	67591136	Missense_Mutation	PIK3R1	7
LIHC-UB-A7MB-TP	17	7578235	7578235	Missense_Mutation	TP53	7
LIHC-BC-A10S-TP	22	30064435	30064435	Missense_Mutation	NF2	6
LIHC-G3-A25Y-TP	10	89711878	89711878	Missense_Mutation	PTEN	6
LIHC-UB-A7MD-TP	17	7579591	7579591	Splice_Site	TP53	6
LIHC-CC-5263-TP	22	30050696	30050696	Missense_Mutation	NF2	5
LIHC-ED-A7PZ-TP	13	49027173	49027173	Missense_Mutation	RB1	5
LIHC-T1-A6J8-TP	17	7578290	7578290	Splice_Site	TP53	5
LIHC-DD-A3A2-TP	12	121431506	121431506	Missense_Mutation	HNF1A	4
LIHC-DD-A4NP-TP	5	112111324	112111324	Splice_Site	APC	4
LIHC-BC-A10S-TP	2	209113296	209113296	Missense_Mutation	IDH1	3
LIHC-BC-A3KF-TP	10	89653817	89653817	Missense_Mutation	PTEN	3
LIHC-CC-A3M9-TP	12	121432040	121432040	Missense_Mutation	HNF1A	3
LIHC-CC-A7IF-TP	13	48954325	48954334	Frame_Shift_Del	RB1	3
LIHC-DD-A11C-TP	10	89711906	89711906	Missense_Mutation	PTEN	3
LIHC-DD-A1EI-TP	3	10191618	10191618	Missense_Mutation	VHL	3
LIHC-FV-A4ZQ-TP	4	153253841	153253841	Missense_Mutation	FBXW7	3
LIHC-QA-A7B7-TP	10	89720726	89720726	Frame_Shift_Del	PTEN	3
LIHC-BC-A10S-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-BC-A69I-TP	17	7579472	7579472	Missense_Mutation	TP53	2
LIHC-CC-A5UD-TP	4	55593652	55593652	Missense_Mutation	KIT	2
LIHC-CC-A7IG-TP	13	49039196	49039228	In_Frame_Del	RB1	2
LIHC-DD-A113-TP	13	48881512	48881512	Nonsense_Mutation	RB1	2
LIHC-DD-A1EG-TP	1	114942160	114942160	Frame_Shift_Del	TRIM33	2
LIHC-DD-A1EI-TP	22	30057293	30057293	Missense_Mutation	NF2	2
LIHC-DD-A1EJ-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-DD-A1EL-TP	11	108204679	108204679	Missense_Mutation	ATM	2
LIHC-DD-A3A0-TP	9	37020769	37020769	Frame_Shift_Del	PAX5	2
LIHC-DD-A3A0-TP	10	89725220	89725220	Frame_Shift_Del	PTEN	2
LIHC-DD-A3A4-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-DD-A4NB-TP	12	25380255	25380255	Missense_Mutation	KRAS	2
LIHC-DD-A4NE-TP	13	48919320	48919321	Frame_Shift_Ins	RB1	2
LIHC-DD-A4NF-TP	23	105011411	105011411	Missense_Mutation	IL1RAPL2	2
LIHC-DD-A4NL-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-ED-A66Y-TP	13	48951053	48951053	Splice_Site	RB1	2
LIHC-EP-A12J-TP	19	1220491	1220491	Missense_Mutation	STK11	2
LIHC-FV-A4ZP-TP	5	72144312	72144312	Missense_Mutation	TNPO1	2
LIHC-G3-A25S-TP	5	112162847	112162847	Missense_Mutation	APC	2
LIHC-G3-A25Y-TP	2	48027935	48027935	Missense_Mutation	MSH6	2
LIHC-G3-A25Y-TP	13	48953728	48953728	Splice_Site	RB1	2
LIHC-G3-A5SI-TP	11	32414248	32414248	Missense_Mutation	WT1	2
LIHC-G3-A5SJ-TP	17	7578513	7578513	Missense_Mutation	TP53	2
LIHC-G3-A5SM-TP	17	7574035	7574035	Splice_Site	TP53	2
LIHC-K7-A6G5-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-MI-A75C-TP	3	41268766	41268766	Missense_Mutation	CTNNB1	2
LIHC-MR-A520-TP	1	94654393	94654393	Missense_Mutation	ARHGAP29	2
LIHC-PD-A5DF-TP	5	67591127	67591129	In_Frame_Del	PIK3R1	2
LIHC-BC-A10R-TP	13	48919317	48919317	Missense_Mutation	RB1	1
LIHC-BC-A10S-TP	11	108106443	108106443	Missense_Mutation	ATM	1
LIHC-BC-A10S-TP	11	31392362	31392362	Missense_Mutation	DNAJC24	1
LIHC-BC-A10S-TP	13	28608473	28608473	Missense_Mutation	FLT3	1
LIHC-BC-A10Y-TP	1	114401098	114401098	Splice_Site	PTPN22	1
LIHC-BC-A110-TP	11	320805	320805	Missense_Mutation	IFITM3	1
LIHC-BC-A110-TP	14	105615648	105615648	Missense_Mutation	JAG2	1
LIHC-BC-A112-TP	23	83128980	83128981	Frame_Shift_Ins	CYLC1	1
LIHC-BC-A112-TP	10	89720665	89720666	Frame_Shift_Ins	PTEN	1
LIHC-BC-A3KF-TP	6	39281882	39281882	Missense_Mutation	KCNK17	1
LIHC-BC-A69H-TP	17	7579389	7579399	Frame_Shift_Del	TP53	1
LIHC-BC-A69I-TP	17	6441376	6441376	Missense_Mutation	PITPNM3	1
LIHC-BD-A3EP-TP	19	7707395	7707395	Missense_Mutation	STXBP2	1
LIHC-CC-5262-TP	17	78704429	78704429	Missense_Mutation	RPTOR	1
LIHC-CC-5264-TP	1	171292300	171292300	Missense_Mutation	FMO4	1
LIHC-CC-A3MB-TP	5	149441327	149441327	Missense_Mutation	CSF1R	1
LIHC-CC-A3MC-TP	10	105086325	105086325	Missense_Mutation	PCGF6	1
LIHC-CC-A7IH-TP	11	64573793	64573793	Frame_Shift_Del	MEN1	1
LIHC-CC-A7IK-TP	8	131848557	131848557	Missense_Mutation	ADCY8	1
LIHC-DD-A114-TP	13	49030478	49030479	Frame_Shift_Ins	RB1	1
LIHC-DD-A116-TP	3	122287562	122287562	Missense_Mutation	DTX3L	1
LIHC-DD-A11A-TP	7	34698055	34698055	Missense_Mutation	NPSR1	1
LIHC-DD-A11C-TP	8	68939541	68939541	Missense_Mutation	PREX2	1
LIHC-DD-A11D-TP	19	46832675	46832675	Missense_Mutation	HIF3A	1
LIHC-DD-A1ED-TP	14	51368610	51368610	Missense_Mutation	ABHD12B	1
LIHC-DD-A1ED-TP	1	26515956	26515956	Missense_Mutation	CNKSR1	1
LIHC-DD-A1ED-TP	1	204518437	204518437	Missense_Mutation	MDM4	1
LIHC-DD-A1ED-TP	16	58079165	58079165	Missense_Mutation	MMP15	1
LIHC-DD-A1ED-TP	7	76991935	76991935	Missense_Mutation	PION	1
LIHC-DD-A1EF-TP	23	5827266	5827266	Missense_Mutation	NLGN4X	1
LIHC-DD-A1EF-TP	19	11141502	11141502	Missense_Mutation	SMARCA4	1
LIHC-DD-A1EG-TP	23	83128981	83128981	Frame_Shift_Del	CYLC1	1
LIHC-DD-A1EL-TP	5	112173696	112173696	Missense_Mutation	APC	1
LIHC-DD-A39Y-TP	20	47364348	47364348	Missense_Mutation	PREX1	1
LIHC-DD-A39Z-TP	3	47155420	47155420	Missense_Mutation	SETD2	1
LIHC-DD-A3A1-TP	15	34355738	34355738	Missense_Mutation	CHRM5	1
LIHC-DD-A3A3-TP	4	55976858	55976858	Missense_Mutation	KDR	1
LIHC-DD-A3A6-TP	19	55418067	55418067	Missense_Mutation	NCR1	1
LIHC-DD-A4NF-TP	1	160165717	160165717	Missense_Mutation	CASQ1	1
LIHC-DD-A4NJ-TP	13	32890650	32890650	Missense_Mutation	BRCA2	1
LIHC-DD-A73E-TP	6	84649778	84649778	Missense_Mutation	CYB5R4	1
LIHC-DD-A73F-TP	4	55961022	55961022	Missense_Mutation	KDR	1
LIHC-DD-A73G-TP	2	5834087	5834087	Nonsense_Mutation	SOX11	1
LIHC-ED-A4XI-TP	10	38345268	38345268	Missense_Mutation	ZNF33A	1
LIHC-ED-A66X-TP	3	134670256	134670256	Missense_Mutation	EPHB1	1
LIHC-EP-A2KA-TP	17	56690838	56690838	Missense_Mutation	TEX14	1
LIHC-EP-A2KB-TP	12	123055607	123055607	Missense_Mutation	KNTC1	1
LIHC-FV-A23B-TP	2	167089899	167089899	Missense_Mutation	SCN9A	1
LIHC-FV-A23B-TP	4	106196772	106196772	Missense_Mutation	TET2	1
LIHC-FV-A2QQ-TP	4	55956196	55956196	Missense_Mutation	KDR	1
LIHC-FV-A2QQ-TP	2	179436094	179436094	Missense_Mutation	TTN	1
LIHC-G3-A25S-TP	19	6825416	6825416	Missense_Mutation	VAV1	1
LIHC-G3-A25T-TP	3	49064263	49064263	Missense_Mutation	IMPDH2	1
LIHC-G3-A25T-TP	8	30921872	30921872	Missense_Mutation	WRN	1
LIHC-G3-A25V-TP	17	11998923	11998923	Frame_Shift_Del	MAP2K4	1
LIHC-G3-A25Y-TP	4	84383755	84383755	Missense_Mutation	FAM175A	1
LIHC-G3-A25Z-TP	2	103299862	103299862	Missense_Mutation	SLC9A2	1
LIHC-G3-A3CH-TP	12	40714961	40714961	Missense_Mutation	LRRK2	1
LIHC-G3-A3CH-TP	13	48954378	48954378	Splice_Site	RB1	1
LIHC-G3-A3CJ-TP	9	21970911	21970911	Frame_Shift_Del	CDKN2A	1
LIHC-G3-A3CJ-TP	16	50811827	50811827	Frame_Shift_Del	CYLD	1
LIHC-G3-A3CJ-TP	10	429978	429978	Missense_Mutation	DIP2C	1
LIHC-G3-A3CJ-TP	17	19729453	19729453	Frame_Shift_Del	ULK2	1
LIHC-G3-A3CK-TP	12	57911095	57911095	Missense_Mutation	DDIT3	1
LIHC-G3-A3CK-TP	4	177608449	177608449	Missense_Mutation	VEGFC	1
LIHC-G3-A5SI-TP	13	48953741	48953742	Frame_Shift_Ins	RB1	1
LIHC-G3-A5SJ-TP	1	11317091	11317091	Missense_Mutation	MTOR	1
LIHC-G3-A5SJ-TP	1	108185301	108185301	Missense_Mutation	VAV3	1
LIHC-KR-A7K0-TP	19	45856053	45856053	Missense_Mutation	ERCC2	1
LIHC-MI-A75G-TP	11	66062546	66062546	Missense_Mutation	TMEM151A	1
LIHC-NI-A4U2-TP	12	121431983	121431983	Missense_Mutation	HNF1A	1
LIHC-NI-A4U2-TP	12	66531753	66531753	Missense_Mutation	TMBIM4	1
LIHC-RC-A6M4-TP	19	18710417	18710417	Missense_Mutation	CRLF1	1
LIHC-RC-A6M4-TP	6	150005471	150005471	Nonsense_Mutation	LATS1	1
LIHC-RC-A6M5-TP	10	43597940	43597940	Missense_Mutation	RET	1
LIHC-RC-A7S9-TP	13	48953788	48953788	Splice_Site	RB1	1
LIHC-RC-A7SK-TP	17	7578410	7578410	Missense_Mutation	TP53	1
LIHC-UB-A7MB-TP	11	26558959	26558959	Missense_Mutation	ANO3	1
