This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 69 focal events and 12 molecular subtypes across 1044 patients, 671 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p22.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_1q21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_1q44 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_3p25.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q26.32 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4q13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6p23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6q21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_8p11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_10p15.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_10q22.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11p13 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q14.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12p13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q15 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q34 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_14q21.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_15q26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q23.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19p13.12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q13.42 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_20q13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_1p21.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_2p25.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p21.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4p16.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q35.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p25.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q15 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q27 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_7p22.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_7q36.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9q21.11 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9q34.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11q23.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12p13.2 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q23.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12q24.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q24.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q24.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q21.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.32 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_20p13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q11.2 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q11.1 cnv correlated to 'CN_CNMF'.
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del_22q13.32 cnv correlated to 'CN_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 69 focal events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 671 significant findings detected.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 1p22 3 | 244 (23%) | 800 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00036 (0.0691) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 3q26 32 | 331 (32%) | 713 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
2e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 6p23 | 288 (28%) | 756 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
4e-05 (0.00972) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 6q21 | 198 (19%) | 846 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 8q24 21 | 663 (64%) | 381 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 10p15 1 | 294 (28%) | 750 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 12p13 33 | 277 (27%) | 767 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 13q34 | 176 (17%) | 868 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 19q12 | 273 (26%) | 771 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 20q13 2 | 535 (51%) | 509 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0006 (0.109) |
0.00027 (0.0535) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 2q37 3 | 310 (30%) | 734 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 3p21 31 | 337 (32%) | 707 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 4p16 3 | 330 (32%) | 714 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 4q35 2 | 337 (32%) | 707 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 5q11 2 | 272 (26%) | 772 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 5q21 3 | 264 (25%) | 780 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 9q34 2 | 293 (28%) | 751 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 10q23 31 | 313 (30%) | 731 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 10q26 3 | 311 (30%) | 733 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 11p15 5 | 302 (29%) | 742 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 12q23 1 | 199 (19%) | 845 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 12q24 31 | 205 (20%) | 839 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 14q24 1 | 341 (33%) | 703 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 15q13 1 | 364 (35%) | 680 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
7e-05 (0.016) |
4e-05 (0.00972) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 16q24 3 | 672 (64%) | 372 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 17p12 | 629 (60%) | 415 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00071 (0.126) |
1e-05 (0.00828) |
del 17q21 31 | 362 (35%) | 682 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 19p13 3 | 350 (34%) | 694 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 19q13 32 | 206 (20%) | 838 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00054 (0.0994) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 20p13 | 156 (15%) | 888 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00024 (0.0487) |
0.00085 (0.146) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 17q23 1 | 417 (40%) | 627 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.358 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
7e-05 (0.016) |
1e-05 (0.00828) |
amp 19p13 12 | 221 (21%) | 823 |
8e-05 (0.0179) |
0.00026 (0.052) |
1e-05 (0.00828) |
5e-05 (0.0117) |
0.00089 (0.152) |
0.00178 (0.273) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
5e-05 (0.0117) |
3e-05 (0.00828) |
del 8p23 2 | 542 (52%) | 502 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00877 (0.947) |
0.00074 (0.13) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 9p23 | 319 (31%) | 725 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0107 (1.00) |
0.00082 (0.142) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00012 (0.0253) |
1e-05 (0.00828) |
del 9q21 11 | 289 (28%) | 755 |
0.00115 (0.193) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00749 (0.846) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 13q14 2 | 485 (46%) | 559 |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.265 (1.00) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 3p25 1 | 197 (19%) | 847 |
0.00077 (0.135) |
5e-05 (0.0117) |
1e-05 (0.00828) |
0.00012 (0.0253) |
0.241 (1.00) |
0.379 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0001 (0.0215) |
2e-05 (0.00828) |
amp 4q13 3 | 159 (15%) | 885 |
1e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0463 (1.00) |
0.0377 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
6e-05 (0.0137) |
1e-05 (0.00828) |
amp 11q13 3 | 386 (37%) | 658 |
0.00024 (0.0487) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.983 (1.00) |
0.00062 (0.112) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00054 (0.0994) |
2e-05 (0.00828) |
0.0105 (1.00) |
0.00028 (0.0549) |
amp 15q26 3 | 187 (18%) | 857 |
1e-05 (0.00828) |
0.00015 (0.0312) |
1e-05 (0.00828) |
0.00115 (0.193) |
0.0022 (0.328) |
0.00783 (0.877) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00015 (0.0312) |
1e-05 (0.00828) |
amp 17q12 | 320 (31%) | 724 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0933 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00118 (0.196) |
1e-05 (0.00828) |
0.00411 (0.53) |
1e-05 (0.00828) |
del 7p22 3 | 134 (13%) | 910 |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00225 (0.333) |
0.00451 (0.55) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
del 8p11 21 | 199 (19%) | 845 |
0.0001 (0.0215) |
0.00026 (0.052) |
1e-05 (0.00828) |
0.0119 (1.00) |
0.0301 (1.00) |
0.00017 (0.035) |
1e-05 (0.00828) |
1e-05 (0.00828) |
3e-05 (0.00828) |
1e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
del 9p21 3 | 357 (34%) | 687 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00496 (0.59) |
0.00419 (0.536) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
del 18q23 | 343 (33%) | 701 |
9e-05 (0.0198) |
5e-05 (0.0117) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00385 (0.52) |
0.0313 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 5p15 33 | 382 (37%) | 662 |
0.00884 (0.947) |
0.00078 (0.136) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0472 (1.00) |
0.477 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 10q22 3 | 146 (14%) | 898 |
2e-05 (0.00828) |
9e-05 (0.0198) |
1e-05 (0.00828) |
0.00275 (0.388) |
0.00473 (0.572) |
0.487 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00031 (0.0601) |
1e-05 (0.00828) |
0.00045 (0.0837) |
4e-05 (0.00972) |
amp 11q14 1 | 258 (25%) | 786 |
0.00555 (0.644) |
9e-05 (0.0198) |
1e-05 (0.00828) |
9e-05 (0.0198) |
0.0834 (1.00) |
0.257 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
8e-05 (0.0179) |
2e-05 (0.00828) |
4e-05 (0.00972) |
amp 12q15 | 269 (26%) | 775 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00024 (0.0487) |
0.29 (1.00) |
0.00479 (0.575) |
1e-05 (0.00828) |
1e-05 (0.00828) |
4e-05 (0.00972) |
1e-05 (0.00828) |
0.00815 (0.9) |
1e-05 (0.00828) |
amp 14q21 1 | 213 (20%) | 831 |
2e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
4e-05 (0.00972) |
0.0691 (1.00) |
0.0026 (0.372) |
1e-05 (0.00828) |
1e-05 (0.00828) |
7e-05 (0.016) |
1e-05 (0.00828) |
0.151 (1.00) |
1e-05 (0.00828) |
del 11q23 2 | 534 (51%) | 510 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.92 (1.00) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0906 (1.00) |
0.0007 (0.125) |
0.244 (1.00) |
0.00126 (0.205) |
amp 1q21 3 | 757 (73%) | 287 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0469 (1.00) |
0.0136 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00211 (0.316) |
1e-05 (0.00828) |
0.0266 (1.00) |
0.00125 (0.205) |
amp 11p13 | 217 (21%) | 827 |
0.164 (1.00) |
0.00093 (0.158) |
1e-05 (0.00828) |
0.00394 (0.527) |
0.0625 (1.00) |
0.0494 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 19q13 42 | 268 (26%) | 776 |
0.00044 (0.0823) |
0.00255 (0.368) |
1e-05 (0.00828) |
0.00095 (0.161) |
0.00122 (0.201) |
0.247 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00011 (0.0234) |
5e-05 (0.0117) |
0.121 (1.00) |
0.0269 (1.00) |
del 1p36 13 | 437 (42%) | 607 |
7e-05 (0.016) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00338 (0.463) |
0.00398 (0.527) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.0102 (1.00) |
0.00177 (0.273) |
del 1p21 2 | 345 (33%) | 699 |
0.00425 (0.54) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00031 (0.0601) |
0.00161 (0.253) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00149 (0.237) |
1e-05 (0.00828) |
0.388 (1.00) |
0.0019 (0.289) |
del 6q15 | 341 (33%) | 703 |
1e-05 (0.00828) |
0.00036 (0.0691) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.454 (1.00) |
0.014 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00195 (0.294) |
1e-05 (0.00828) |
0.00287 (0.399) |
1e-05 (0.00828) |
del 7q36 1 | 195 (19%) | 849 |
0.0025 (0.367) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00264 (0.375) |
0.31 (1.00) |
0.0309 (1.00) |
1e-05 (0.00828) |
2e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
amp 8p11 23 | 399 (38%) | 645 |
1e-05 (0.00828) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00014 (0.0293) |
0.0543 (1.00) |
4e-05 (0.00972) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.412 (1.00) |
0.129 (1.00) |
0.46 (1.00) |
0.0507 (1.00) |
amp 8p11 21 | 411 (39%) | 633 |
0.0442 (1.00) |
0.00425 (0.54) |
1e-05 (0.00828) |
8e-05 (0.0179) |
0.901 (1.00) |
0.0768 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.00981 (1.00) |
0.0007 (0.125) |
0.00145 (0.232) |
3e-05 (0.00828) |
del 21q11 2 | 209 (20%) | 835 |
0.00019 (0.0389) |
0.00396 (0.527) |
1e-05 (0.00828) |
0.00027 (0.0535) |
0.0614 (1.00) |
0.00849 (0.925) |
0.00011 (0.0234) |
1e-05 (0.00828) |
0.00393 (0.527) |
4e-05 (0.00972) |
0.159 (1.00) |
0.00066 (0.119) |
amp 1q44 | 763 (73%) | 281 |
2e-05 (0.00828) |
0.00125 (0.205) |
1e-05 (0.00828) |
0.00436 (0.54) |
0.853 (1.00) |
0.364 (1.00) |
1e-05 (0.00828) |
8e-05 (0.0179) |
0.82 (1.00) |
0.0296 (1.00) |
0.214 (1.00) |
0.00695 (0.795) |
del 2p25 1 | 198 (19%) | 846 |
0.419 (1.00) |
0.382 (1.00) |
1e-05 (0.00828) |
0.00427 (0.54) |
0.184 (1.00) |
0.225 (1.00) |
0.0204 (1.00) |
1e-05 (0.00828) |
0.00019 (0.0389) |
9e-05 (0.0198) |
0.00691 (0.795) |
0.00161 (0.253) |
del 11q13 1 | 233 (22%) | 811 |
0.00406 (0.528) |
0.00254 (0.368) |
1e-05 (0.00828) |
5e-05 (0.0117) |
0.399 (1.00) |
0.0256 (1.00) |
1e-05 (0.00828) |
1e-05 (0.00828) |
0.286 (1.00) |
0.00425 (0.54) |
0.286 (1.00) |
0.0115 (1.00) |
del 6p25 3 | 202 (19%) | 842 |
0.376 (1.00) |
0.74 (1.00) |
1e-05 (0.00828) |
0.00364 (0.495) |
0.391 (1.00) |
0.0953 (1.00) |
0.00144 (0.232) |
0.0473 (1.00) |
0.199 (1.00) |
0.0345 (1.00) |
0.0309 (1.00) |
0.00039 (0.0741) |
del 6q27 | 362 (35%) | 682 |
0.0219 (1.00) |
0.011 (1.00) |
1e-05 (0.00828) |
0.15 (1.00) |
0.0587 (1.00) |
0.0644 (1.00) |
0.00154 (0.243) |
0.00028 (0.0549) |
0.472 (1.00) |
0.164 (1.00) |
0.665 (1.00) |
0.683 (1.00) |
del 12p13 2 | 177 (17%) | 867 |
0.035 (1.00) |
0.107 (1.00) |
0.00046 (0.0851) |
0.0336 (1.00) |
0.32 (1.00) |
0.236 (1.00) |
0.00511 (0.603) |
0.00167 (0.259) |
0.0004 (0.0756) |
0.00041 (0.0771) |
0.0028 (0.392) |
0.00325 (0.448) |
del 22q11 1 | 453 (43%) | 591 |
0.372 (1.00) |
0.435 (1.00) |
1e-05 (0.00828) |
0.023 (1.00) |
0.342 (1.00) |
0.104 (1.00) |
0.42 (1.00) |
0.223 (1.00) |
0.0908 (1.00) |
0.00547 (0.64) |
0.402 (1.00) |
0.09 (1.00) |
del 22q13 32 | 481 (46%) | 563 |
0.257 (1.00) |
0.0106 (1.00) |
1e-05 (0.00828) |
0.0816 (1.00) |
0.173 (1.00) |
0.0171 (1.00) |
0.0187 (1.00) |
0.00252 (0.368) |
0.0707 (1.00) |
0.00811 (0.9) |
0.495 (1.00) |
0.106 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S1. Gene #1: 'amp_1p22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 1(1P22.3) MUTATED | 4 | 3 | 14 | 51 | 24 | 15 | 2 | 2 |
AMP PEAK 1(1P22.3) WILD-TYPE | 17 | 33 | 105 | 45 | 85 | 57 | 18 | 38 |
Figure S1. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D1V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S2. Gene #1: 'amp_1p22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 1(1P22.3) MUTATED | 14 | 19 | 24 | 47 | 11 |
AMP PEAK 1(1P22.3) WILD-TYPE | 87 | 133 | 90 | 41 | 47 |
Figure S2. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D1V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S3. Gene #1: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 1(1P22.3) MUTATED | 52 | 36 | 31 | 113 | 12 |
AMP PEAK 1(1P22.3) WILD-TYPE | 347 | 204 | 68 | 151 | 30 |
Figure S3. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D1V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S4. Gene #1: 'amp_1p22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 1(1P22.3) MUTATED | 72 | 30 | 33 | 11 | 23 |
AMP PEAK 1(1P22.3) WILD-TYPE | 60 | 167 | 144 | 77 | 105 |
Figure S4. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D1V4.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.069
Table S5. Gene #1: 'amp_1p22.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 1(1P22.3) MUTATED | 52 | 27 | 17 |
AMP PEAK 1(1P22.3) WILD-TYPE | 97 | 105 | 100 |
Figure S5. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D1V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S6. Gene #1: 'amp_1p22.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 1(1P22.3) MUTATED | 15 | 14 | 45 | 17 | 5 |
AMP PEAK 1(1P22.3) WILD-TYPE | 49 | 92 | 45 | 90 | 26 |
Figure S6. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D1V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S7. Gene #1: 'amp_1p22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 1(1P22.3) MUTATED | 99 | 14 | 53 | 36 | 33 | 5 | 2 |
AMP PEAK 1(1P22.3) WILD-TYPE | 91 | 129 | 181 | 125 | 211 | 47 | 14 |
Figure S7. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D1V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S8. Gene #1: 'amp_1p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 1(1P22.3) MUTATED | 97 | 29 | 35 | 38 | 28 | 15 |
AMP PEAK 1(1P22.3) WILD-TYPE | 81 | 214 | 162 | 142 | 156 | 43 |
Figure S8. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S9. Gene #1: 'amp_1p22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 1(1P22.3) MUTATED | 50 | 66 | 125 |
AMP PEAK 1(1P22.3) WILD-TYPE | 256 | 356 | 172 |
Figure S9. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D1V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S10. Gene #1: 'amp_1p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 1(1P22.3) MUTATED | 27 | 27 | 72 | 78 | 37 |
AMP PEAK 1(1P22.3) WILD-TYPE | 147 | 159 | 333 | 56 | 89 |
Figure S10. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D1V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S11. Gene #1: 'amp_1p22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 1(1P22.3) MUTATED | 35 | 42 | 92 |
AMP PEAK 1(1P22.3) WILD-TYPE | 214 | 214 | 117 |
Figure S11. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D1V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S12. Gene #1: 'amp_1p22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 1(1P22.3) MUTATED | 70 | 6 | 39 | 21 | 17 | 16 |
AMP PEAK 1(1P22.3) WILD-TYPE | 57 | 61 | 154 | 114 | 108 | 51 |
Figure S12. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S13. Gene #2: 'amp_1q21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 2(1Q21.3) MUTATED | 16 | 19 | 75 | 88 | 88 | 54 | 10 | 29 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 5 | 17 | 44 | 8 | 21 | 18 | 10 | 11 |
Figure S13. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S14. Gene #2: 'amp_1q21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 2(1Q21.3) MUTATED | 62 | 102 | 89 | 81 | 45 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 39 | 50 | 25 | 7 | 13 |
Figure S14. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D2V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S15. Gene #2: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 2(1Q21.3) MUTATED | 245 | 177 | 97 | 207 | 31 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 154 | 63 | 2 | 57 | 11 |
Figure S15. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D2V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S16. Gene #2: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 2(1Q21.3) MUTATED | 112 | 144 | 130 | 65 | 70 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 20 | 53 | 47 | 23 | 58 |
Figure S16. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D2V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S17. Gene #2: 'amp_1q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 2(1Q21.3) MUTATED | 163 | 84 | 196 | 113 | 152 | 35 | 10 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 27 | 59 | 38 | 48 | 92 | 17 | 6 |
Figure S17. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D2V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S18. Gene #2: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 2(1Q21.3) MUTATED | 155 | 158 | 149 | 139 | 119 | 33 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 23 | 85 | 48 | 41 | 65 | 25 |
Figure S18. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S19. Gene #2: 'amp_1q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 2(1Q21.3) MUTATED | 117 | 112 | 301 | 120 | 90 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 57 | 74 | 104 | 14 | 36 |
Figure S19. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D2V10.png)
P value = 0.00125 (Fisher's exact test), Q value = 0.2
Table S20. Gene #2: 'amp_1q21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 2(1Q21.3) MUTATED | 105 | 41 | 142 | 82 | 90 | 44 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 22 | 26 | 51 | 53 | 35 | 23 |
Figure S20. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V12.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S21. Gene #3: 'amp_1q44' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 3(1Q44) MUTATED | 16 | 20 | 69 | 78 | 91 | 57 | 11 | 32 |
AMP PEAK 3(1Q44) WILD-TYPE | 5 | 16 | 50 | 18 | 18 | 15 | 9 | 8 |
Figure S21. Get High-res Image Gene #3: 'amp_1q44' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D3V1.png)
P value = 0.00125 (Fisher's exact test), Q value = 0.2
Table S22. Gene #3: 'amp_1q44' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 3(1Q44) MUTATED | 59 | 107 | 92 | 72 | 44 |
AMP PEAK 3(1Q44) WILD-TYPE | 42 | 45 | 22 | 16 | 14 |
Figure S22. Get High-res Image Gene #3: 'amp_1q44' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D3V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S23. Gene #3: 'amp_1q44' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 3(1Q44) MUTATED | 256 | 180 | 99 | 200 | 28 |
AMP PEAK 3(1Q44) WILD-TYPE | 143 | 60 | 0 | 64 | 14 |
Figure S23. Get High-res Image Gene #3: 'amp_1q44' versus Molecular Subtype #3: 'CN_CNMF'
![](D3V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S24. Gene #3: 'amp_1q44' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 3(1Q44) MUTATED | 146 | 95 | 202 | 118 | 145 | 41 | 12 |
AMP PEAK 3(1Q44) WILD-TYPE | 44 | 48 | 32 | 43 | 99 | 11 | 4 |
Figure S24. Get High-res Image Gene #3: 'amp_1q44' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D3V7.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.018
Table S25. Gene #3: 'amp_1q44' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 3(1Q44) MUTATED | 139 | 175 | 152 | 145 | 113 | 35 |
AMP PEAK 3(1Q44) WILD-TYPE | 39 | 68 | 45 | 35 | 71 | 23 |
Figure S25. Get High-res Image Gene #3: 'amp_1q44' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.13
Table S26. Gene #4: 'amp_3p25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 4(3P25.1) MUTATED | 6 | 7 | 34 | 20 | 18 | 25 | 7 | 1 |
AMP PEAK 4(3P25.1) WILD-TYPE | 15 | 29 | 85 | 76 | 91 | 47 | 13 | 39 |
Figure S26. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D4V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S27. Gene #4: 'amp_3p25.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 4(3P25.1) MUTATED | 27 | 18 | 42 | 18 | 13 |
AMP PEAK 4(3P25.1) WILD-TYPE | 74 | 134 | 72 | 70 | 45 |
Figure S27. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D4V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S28. Gene #4: 'amp_3p25.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 4(3P25.1) MUTATED | 20 | 71 | 24 | 72 | 10 |
AMP PEAK 4(3P25.1) WILD-TYPE | 379 | 169 | 75 | 192 | 32 |
Figure S28. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D4V3.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.025
Table S29. Gene #4: 'amp_3p25.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 4(3P25.1) MUTATED | 34 | 19 | 38 | 10 | 14 |
AMP PEAK 4(3P25.1) WILD-TYPE | 98 | 178 | 139 | 78 | 114 |
Figure S29. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D4V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S30. Gene #4: 'amp_3p25.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 4(3P25.1) MUTATED | 46 | 9 | 31 | 42 | 61 | 2 | 5 |
AMP PEAK 4(3P25.1) WILD-TYPE | 144 | 134 | 203 | 119 | 183 | 50 | 11 |
Figure S30. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D4V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S31. Gene #4: 'amp_3p25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 4(3P25.1) MUTATED | 43 | 19 | 22 | 58 | 41 | 13 |
AMP PEAK 4(3P25.1) WILD-TYPE | 135 | 224 | 175 | 122 | 143 | 45 |
Figure S31. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S32. Gene #4: 'amp_3p25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 4(3P25.1) MUTATED | 32 | 82 | 75 |
AMP PEAK 4(3P25.1) WILD-TYPE | 274 | 340 | 222 |
Figure S32. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D4V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S33. Gene #4: 'amp_3p25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 4(3P25.1) MUTATED | 10 | 22 | 90 | 33 | 34 |
AMP PEAK 4(3P25.1) WILD-TYPE | 164 | 164 | 315 | 101 | 92 |
Figure S33. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D4V10.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.021
Table S34. Gene #4: 'amp_3p25.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 4(3P25.1) MUTATED | 45 | 28 | 55 |
AMP PEAK 4(3P25.1) WILD-TYPE | 204 | 228 | 154 |
Figure S34. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D4V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S35. Gene #4: 'amp_3p25.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 4(3P25.1) MUTATED | 32 | 4 | 44 | 22 | 9 | 17 |
AMP PEAK 4(3P25.1) WILD-TYPE | 95 | 63 | 149 | 113 | 116 | 50 |
Figure S35. Get High-res Image Gene #4: 'amp_3p25.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D4V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S36. Gene #5: 'amp_3q26.32' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 5(3Q26.32) MUTATED | 5 | 11 | 41 | 58 | 19 | 34 | 9 | 4 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 16 | 25 | 78 | 38 | 90 | 38 | 11 | 36 |
Figure S36. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D5V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S37. Gene #5: 'amp_3q26.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 5(3Q26.32) MUTATED | 29 | 29 | 57 | 53 | 13 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 72 | 123 | 57 | 35 | 45 |
Figure S37. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D5V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S38. Gene #5: 'amp_3q26.32' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 5(3Q26.32) MUTATED | 36 | 95 | 29 | 161 | 10 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 363 | 145 | 70 | 103 | 32 |
Figure S38. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #3: 'CN_CNMF'
![](D5V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S39. Gene #5: 'amp_3q26.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 5(3Q26.32) MUTATED | 83 | 36 | 51 | 18 | 22 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 49 | 161 | 126 | 70 | 106 |
Figure S39. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D5V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S40. Gene #5: 'amp_3q26.32' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 5(3Q26.32) MUTATED | 76 | 36 | 30 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 73 | 96 | 87 |
Figure S40. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D5V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S41. Gene #5: 'amp_3q26.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 5(3Q26.32) MUTATED | 22 | 26 | 54 | 30 | 10 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 42 | 80 | 36 | 77 | 21 |
Figure S41. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D5V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S42. Gene #5: 'amp_3q26.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 5(3Q26.32) MUTATED | 119 | 20 | 45 | 64 | 68 | 4 | 8 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 71 | 123 | 189 | 97 | 176 | 48 | 8 |
Figure S42. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D5V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S43. Gene #5: 'amp_3q26.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 5(3Q26.32) MUTATED | 112 | 30 | 35 | 74 | 52 | 25 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 66 | 213 | 162 | 106 | 132 | 33 |
Figure S43. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S44. Gene #5: 'amp_3q26.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 5(3Q26.32) MUTATED | 46 | 115 | 161 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 260 | 307 | 136 |
Figure S44. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D5V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S45. Gene #5: 'amp_3q26.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 5(3Q26.32) MUTATED | 17 | 41 | 120 | 83 | 61 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 157 | 145 | 285 | 51 | 65 |
Figure S45. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S46. Gene #5: 'amp_3q26.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 5(3Q26.32) MUTATED | 57 | 44 | 108 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 192 | 212 | 101 |
Figure S46. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D5V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S47. Gene #5: 'amp_3q26.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 5(3Q26.32) MUTATED | 75 | 8 | 55 | 32 | 13 | 26 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 52 | 59 | 138 | 103 | 112 | 41 |
Figure S47. Get High-res Image Gene #5: 'amp_3q26.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S48. Gene #6: 'amp_4q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 6(4Q13.3) MUTATED | 4 | 3 | 32 | 19 | 3 | 18 | 4 | 3 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 17 | 33 | 87 | 77 | 106 | 54 | 16 | 37 |
Figure S48. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D6V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S49. Gene #6: 'amp_4q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 6(4Q13.3) MUTATED | 22 | 12 | 31 | 19 | 2 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 79 | 140 | 83 | 69 | 56 |
Figure S49. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D6V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S50. Gene #6: 'amp_4q13.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 6(4Q13.3) MUTATED | 19 | 71 | 2 | 60 | 7 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 380 | 169 | 97 | 204 | 35 |
Figure S50. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D6V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S51. Gene #6: 'amp_4q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 6(4Q13.3) MUTATED | 32 | 15 | 37 | 5 | 11 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 100 | 182 | 140 | 83 | 117 |
Figure S51. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D6V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S52. Gene #6: 'amp_4q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 6(4Q13.3) MUTATED | 40 | 7 | 13 | 35 | 58 | 2 | 4 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 150 | 136 | 221 | 126 | 186 | 50 | 12 |
Figure S52. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D6V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S53. Gene #6: 'amp_4q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 6(4Q13.3) MUTATED | 39 | 17 | 8 | 36 | 41 | 18 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 139 | 226 | 189 | 144 | 143 | 40 |
Figure S53. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S54. Gene #6: 'amp_4q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 6(4Q13.3) MUTATED | 24 | 64 | 69 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 282 | 358 | 228 |
Figure S54. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D6V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S55. Gene #6: 'amp_4q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 6(4Q13.3) MUTATED | 6 | 22 | 63 | 30 | 36 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 168 | 164 | 342 | 104 | 90 |
Figure S55. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.014
Table S56. Gene #6: 'amp_4q13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 6(4Q13.3) MUTATED | 38 | 19 | 47 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 211 | 237 | 162 |
Figure S56. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D6V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S57. Gene #6: 'amp_4q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 6(4Q13.3) MUTATED | 29 | 3 | 27 | 21 | 5 | 19 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 98 | 64 | 166 | 114 | 120 | 48 |
Figure S57. Get High-res Image Gene #6: 'amp_4q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V12.png)
P value = 0.00078 (Fisher's exact test), Q value = 0.14
Table S58. Gene #7: 'amp_5p15.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 7(5P15.33) MUTATED | 34 | 44 | 59 | 40 | 17 |
AMP PEAK 7(5P15.33) WILD-TYPE | 67 | 108 | 55 | 48 | 41 |
Figure S58. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D7V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S59. Gene #7: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 7(5P15.33) MUTATED | 64 | 116 | 52 | 136 | 14 |
AMP PEAK 7(5P15.33) WILD-TYPE | 335 | 124 | 47 | 128 | 28 |
Figure S59. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
![](D7V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S60. Gene #7: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 7(5P15.33) MUTATED | 69 | 55 | 76 | 25 | 30 |
AMP PEAK 7(5P15.33) WILD-TYPE | 63 | 142 | 101 | 63 | 98 |
Figure S60. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D7V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S61. Gene #7: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 7(5P15.33) MUTATED | 94 | 35 | 73 | 68 | 89 | 11 | 9 |
AMP PEAK 7(5P15.33) WILD-TYPE | 96 | 108 | 161 | 93 | 155 | 41 | 7 |
Figure S61. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D7V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S62. Gene #7: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 7(5P15.33) MUTATED | 88 | 65 | 46 | 84 | 70 | 26 |
AMP PEAK 7(5P15.33) WILD-TYPE | 90 | 178 | 151 | 96 | 114 | 32 |
Figure S62. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S63. Gene #7: 'amp_5p15.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 7(5P15.33) MUTATED | 83 | 153 | 136 |
AMP PEAK 7(5P15.33) WILD-TYPE | 223 | 269 | 161 |
Figure S63. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D7V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S64. Gene #7: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 7(5P15.33) MUTATED | 37 | 59 | 152 | 64 | 60 |
AMP PEAK 7(5P15.33) WILD-TYPE | 137 | 127 | 253 | 70 | 66 |
Figure S64. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D7V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S65. Gene #7: 'amp_5p15.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 7(5P15.33) MUTATED | 94 | 67 | 96 |
AMP PEAK 7(5P15.33) WILD-TYPE | 155 | 189 | 113 |
Figure S65. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D7V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S66. Gene #7: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 7(5P15.33) MUTATED | 60 | 15 | 83 | 44 | 26 | 29 |
AMP PEAK 7(5P15.33) WILD-TYPE | 67 | 52 | 110 | 91 | 99 | 38 |
Figure S66. Get High-res Image Gene #7: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S67. Gene #8: 'amp_6p23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 8(6P23) MUTATED | 3 | 7 | 30 | 49 | 18 | 28 | 9 | 6 |
AMP PEAK 8(6P23) WILD-TYPE | 18 | 29 | 89 | 47 | 91 | 44 | 11 | 34 |
Figure S67. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D8V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S68. Gene #8: 'amp_6p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 8(6P23) MUTATED | 22 | 28 | 48 | 45 | 7 |
AMP PEAK 8(6P23) WILD-TYPE | 79 | 124 | 66 | 43 | 51 |
Figure S68. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D8V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S69. Gene #8: 'amp_6p23' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 8(6P23) MUTATED | 26 | 80 | 23 | 146 | 13 |
AMP PEAK 8(6P23) WILD-TYPE | 373 | 160 | 76 | 118 | 29 |
Figure S69. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #3: 'CN_CNMF'
![](D8V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S70. Gene #8: 'amp_6p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 8(6P23) MUTATED | 74 | 29 | 59 | 7 | 23 |
AMP PEAK 8(6P23) WILD-TYPE | 58 | 168 | 118 | 81 | 105 |
Figure S70. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D8V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S71. Gene #8: 'amp_6p23' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 8(6P23) MUTATED | 68 | 24 | 24 |
AMP PEAK 8(6P23) WILD-TYPE | 81 | 108 | 93 |
Figure S71. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D8V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S72. Gene #8: 'amp_6p23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 8(6P23) MUTATED | 14 | 21 | 46 | 27 | 8 |
AMP PEAK 8(6P23) WILD-TYPE | 50 | 85 | 44 | 80 | 23 |
Figure S72. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D8V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S73. Gene #8: 'amp_6p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 8(6P23) MUTATED | 102 | 17 | 33 | 53 | 65 | 8 | 9 |
AMP PEAK 8(6P23) WILD-TYPE | 88 | 126 | 201 | 108 | 179 | 44 | 7 |
Figure S73. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D8V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S74. Gene #8: 'amp_6p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 8(6P23) MUTATED | 93 | 38 | 18 | 78 | 42 | 18 |
AMP PEAK 8(6P23) WILD-TYPE | 85 | 205 | 179 | 102 | 142 | 40 |
Figure S74. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D8V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S75. Gene #8: 'amp_6p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 8(6P23) MUTATED | 39 | 98 | 139 |
AMP PEAK 8(6P23) WILD-TYPE | 267 | 324 | 158 |
Figure S75. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D8V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S76. Gene #8: 'amp_6p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 8(6P23) MUTATED | 12 | 28 | 111 | 70 | 55 |
AMP PEAK 8(6P23) WILD-TYPE | 162 | 158 | 294 | 64 | 71 |
Figure S76. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D8V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S77. Gene #8: 'amp_6p23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 8(6P23) MUTATED | 49 | 37 | 97 |
AMP PEAK 8(6P23) WILD-TYPE | 200 | 219 | 112 |
Figure S77. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D8V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S78. Gene #8: 'amp_6p23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 8(6P23) MUTATED | 62 | 7 | 50 | 29 | 12 | 23 |
AMP PEAK 8(6P23) WILD-TYPE | 65 | 60 | 143 | 106 | 113 | 44 |
Figure S78. Get High-res Image Gene #8: 'amp_6p23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D8V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S79. Gene #9: 'amp_6q21' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 9(6Q21) MUTATED | 4 | 1 | 11 | 42 | 11 | 24 | 9 | 2 |
AMP PEAK 9(6Q21) WILD-TYPE | 17 | 35 | 108 | 54 | 98 | 48 | 11 | 38 |
Figure S79. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D9V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S80. Gene #9: 'amp_6q21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 9(6Q21) MUTATED | 10 | 14 | 39 | 37 | 4 |
AMP PEAK 9(6Q21) WILD-TYPE | 91 | 138 | 75 | 51 | 54 |
Figure S80. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D9V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S81. Gene #9: 'amp_6q21' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 9(6Q21) MUTATED | 23 | 22 | 17 | 131 | 5 |
AMP PEAK 9(6Q21) WILD-TYPE | 376 | 218 | 82 | 133 | 37 |
Figure S81. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #3: 'CN_CNMF'
![](D9V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S82. Gene #9: 'amp_6q21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 9(6Q21) MUTATED | 61 | 9 | 31 | 6 | 20 |
AMP PEAK 9(6Q21) WILD-TYPE | 71 | 188 | 146 | 82 | 108 |
Figure S82. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D9V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S83. Gene #9: 'amp_6q21' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 9(6Q21) MUTATED | 55 | 11 | 16 |
AMP PEAK 9(6Q21) WILD-TYPE | 94 | 121 | 101 |
Figure S83. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D9V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S84. Gene #9: 'amp_6q21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 9(6Q21) MUTATED | 6 | 15 | 38 | 16 | 7 |
AMP PEAK 9(6Q21) WILD-TYPE | 58 | 91 | 52 | 91 | 24 |
Figure S84. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D9V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S85. Gene #9: 'amp_6q21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 9(6Q21) MUTATED | 88 | 9 | 20 | 44 | 26 | 4 | 6 |
AMP PEAK 9(6Q21) WILD-TYPE | 102 | 134 | 214 | 117 | 218 | 48 | 10 |
Figure S85. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D9V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S86. Gene #9: 'amp_6q21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 9(6Q21) MUTATED | 81 | 13 | 10 | 53 | 21 | 19 |
AMP PEAK 9(6Q21) WILD-TYPE | 97 | 230 | 187 | 127 | 163 | 39 |
Figure S86. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S87. Gene #9: 'amp_6q21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 9(6Q21) MUTATED | 19 | 50 | 119 |
AMP PEAK 9(6Q21) WILD-TYPE | 287 | 372 | 178 |
Figure S87. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D9V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S88. Gene #9: 'amp_6q21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 9(6Q21) MUTATED | 8 | 7 | 63 | 58 | 52 |
AMP PEAK 9(6Q21) WILD-TYPE | 166 | 179 | 342 | 76 | 74 |
Figure S88. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D9V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S89. Gene #9: 'amp_6q21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 9(6Q21) MUTATED | 29 | 16 | 86 |
AMP PEAK 9(6Q21) WILD-TYPE | 220 | 240 | 123 |
Figure S89. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D9V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S90. Gene #9: 'amp_6q21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 9(6Q21) MUTATED | 58 | 2 | 30 | 10 | 6 | 25 |
AMP PEAK 9(6Q21) WILD-TYPE | 69 | 65 | 163 | 125 | 119 | 42 |
Figure S90. Get High-res Image Gene #9: 'amp_6q21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D9V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S91. Gene #10: 'amp_8p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 10(8P11.23) MUTATED | 11 | 18 | 74 | 33 | 36 | 23 | 5 | 9 |
AMP PEAK 10(8P11.23) WILD-TYPE | 10 | 18 | 45 | 63 | 73 | 49 | 15 | 31 |
Figure S91. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D10V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S92. Gene #10: 'amp_8p11.23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 10(8P11.23) MUTATED | 64 | 62 | 41 | 30 | 12 |
AMP PEAK 10(8P11.23) WILD-TYPE | 37 | 90 | 73 | 58 | 46 |
Figure S92. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D10V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S93. Gene #10: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 10(8P11.23) MUTATED | 110 | 129 | 41 | 78 | 41 |
AMP PEAK 10(8P11.23) WILD-TYPE | 289 | 111 | 58 | 186 | 1 |
Figure S93. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
![](D10V3.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.029
Table S94. Gene #10: 'amp_8p11.23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 10(8P11.23) MUTATED | 47 | 66 | 92 | 32 | 35 |
AMP PEAK 10(8P11.23) WILD-TYPE | 85 | 131 | 85 | 56 | 93 |
Figure S94. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D10V4.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S95. Gene #10: 'amp_8p11.23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 10(8P11.23) MUTATED | 28 | 47 | 32 | 54 | 2 |
AMP PEAK 10(8P11.23) WILD-TYPE | 36 | 59 | 58 | 53 | 29 |
Figure S95. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D10V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S96. Gene #10: 'amp_8p11.23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 10(8P11.23) MUTATED | 62 | 51 | 71 | 44 | 149 | 13 | 6 |
AMP PEAK 10(8P11.23) WILD-TYPE | 128 | 92 | 163 | 117 | 95 | 39 | 10 |
Figure S96. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D10V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S97. Gene #10: 'amp_8p11.23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 10(8P11.23) MUTATED | 57 | 81 | 51 | 77 | 116 | 14 |
AMP PEAK 10(8P11.23) WILD-TYPE | 121 | 162 | 146 | 103 | 68 | 44 |
Figure S97. Get High-res Image Gene #10: 'amp_8p11.23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D10V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S98. Gene #11: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 11(8P11.21) MUTATED | 103 | 115 | 44 | 107 | 42 |
AMP PEAK 11(8P11.21) WILD-TYPE | 296 | 125 | 55 | 157 | 0 |
Figure S98. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
![](D11V3.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.018
Table S99. Gene #11: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 11(8P11.21) MUTATED | 71 | 65 | 81 | 28 | 38 |
AMP PEAK 11(8P11.21) WILD-TYPE | 61 | 132 | 96 | 60 | 90 |
Figure S99. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D11V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S100. Gene #11: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 11(8P11.21) MUTATED | 97 | 42 | 76 | 46 | 130 | 11 | 6 |
AMP PEAK 11(8P11.21) WILD-TYPE | 93 | 101 | 158 | 115 | 114 | 41 | 10 |
Figure S100. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D11V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S101. Gene #11: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 11(8P11.21) MUTATED | 91 | 70 | 55 | 74 | 102 | 16 |
AMP PEAK 11(8P11.21) WILD-TYPE | 87 | 173 | 142 | 106 | 82 | 42 |
Figure S101. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 7e-04 (Fisher's exact test), Q value = 0.13
Table S102. Gene #11: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 11(8P11.21) MUTATED | 51 | 75 | 159 | 72 | 45 |
AMP PEAK 11(8P11.21) WILD-TYPE | 123 | 111 | 246 | 62 | 81 |
Figure S102. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 0.00145 (Fisher's exact test), Q value = 0.23
Table S103. Gene #11: 'amp_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 11(8P11.21) MUTATED | 82 | 84 | 99 |
AMP PEAK 11(8P11.21) WILD-TYPE | 167 | 172 | 110 |
Figure S103. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D11V11.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.0083
Table S104. Gene #11: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 11(8P11.21) MUTATED | 64 | 15 | 66 | 63 | 31 | 26 |
AMP PEAK 11(8P11.21) WILD-TYPE | 63 | 52 | 127 | 72 | 94 | 41 |
Figure S104. Get High-res Image Gene #11: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S105. Gene #12: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 12(8Q24.21) MUTATED | 17 | 20 | 96 | 83 | 46 | 56 | 17 | 15 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 4 | 16 | 23 | 13 | 63 | 16 | 3 | 25 |
Figure S105. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D12V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S106. Gene #12: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 12(8Q24.21) MUTATED | 84 | 83 | 92 | 75 | 16 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 17 | 69 | 22 | 13 | 42 |
Figure S106. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D12V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S107. Gene #12: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 12(8Q24.21) MUTATED | 144 | 191 | 48 | 239 | 41 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 255 | 49 | 51 | 25 | 1 |
Figure S107. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
![](D12V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S108. Gene #12: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 12(8Q24.21) MUTATED | 120 | 82 | 125 | 39 | 68 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 12 | 115 | 52 | 49 | 60 |
Figure S108. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D12V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S109. Gene #12: 'amp_8q24.21' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 12(8Q24.21) MUTATED | 126 | 71 | 76 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 23 | 61 | 41 |
Figure S109. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D12V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S110. Gene #12: 'amp_8q24.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 12(8Q24.21) MUTATED | 34 | 57 | 78 | 79 | 25 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 30 | 49 | 12 | 28 | 6 |
Figure S110. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D12V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S111. Gene #12: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 12(8Q24.21) MUTATED | 169 | 66 | 94 | 114 | 184 | 19 | 13 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 21 | 77 | 140 | 47 | 60 | 33 | 3 |
Figure S111. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D12V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S112. Gene #12: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 12(8Q24.21) MUTATED | 159 | 108 | 72 | 139 | 138 | 43 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 19 | 135 | 125 | 41 | 46 | 15 |
Figure S112. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S113. Gene #12: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 12(8Q24.21) MUTATED | 134 | 255 | 259 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 172 | 167 | 38 |
Figure S113. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D12V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S114. Gene #12: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 12(8Q24.21) MUTATED | 59 | 95 | 268 | 123 | 103 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 115 | 91 | 137 | 11 | 23 |
Figure S114. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D12V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S115. Gene #12: 'amp_8q24.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 12(8Q24.21) MUTATED | 139 | 109 | 184 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 110 | 147 | 25 |
Figure S115. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D12V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S116. Gene #12: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 12(8Q24.21) MUTATED | 113 | 23 | 122 | 79 | 39 | 56 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 14 | 44 | 71 | 56 | 86 | 11 |
Figure S116. Get High-res Image Gene #12: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S117. Gene #13: 'amp_10p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 13(10P15.1) MUTATED | 6 | 4 | 26 | 67 | 12 | 33 | 6 | 7 |
AMP PEAK 13(10P15.1) WILD-TYPE | 15 | 32 | 93 | 29 | 97 | 39 | 14 | 33 |
Figure S117. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S118. Gene #13: 'amp_10p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 13(10P15.1) MUTATED | 16 | 22 | 53 | 63 | 7 |
AMP PEAK 13(10P15.1) WILD-TYPE | 85 | 130 | 61 | 25 | 51 |
Figure S118. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D13V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S119. Gene #13: 'amp_10p15.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 13(10P15.1) MUTATED | 33 | 67 | 19 | 166 | 9 |
AMP PEAK 13(10P15.1) WILD-TYPE | 366 | 173 | 80 | 98 | 33 |
Figure S119. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D13V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S120. Gene #13: 'amp_10p15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 13(10P15.1) MUTATED | 88 | 16 | 45 | 9 | 31 |
AMP PEAK 13(10P15.1) WILD-TYPE | 44 | 181 | 132 | 79 | 97 |
Figure S120. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D13V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S121. Gene #13: 'amp_10p15.1' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 13(10P15.1) MUTATED | 78 | 22 | 29 |
AMP PEAK 13(10P15.1) WILD-TYPE | 71 | 110 | 88 |
Figure S121. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D13V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S122. Gene #13: 'amp_10p15.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 13(10P15.1) MUTATED | 8 | 24 | 61 | 27 | 9 |
AMP PEAK 13(10P15.1) WILD-TYPE | 56 | 82 | 29 | 80 | 22 |
Figure S122. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D13V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S123. Gene #13: 'amp_10p15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 13(10P15.1) MUTATED | 122 | 17 | 26 | 58 | 56 | 8 | 7 |
AMP PEAK 13(10P15.1) WILD-TYPE | 68 | 126 | 208 | 103 | 188 | 44 | 9 |
Figure S123. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D13V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S124. Gene #13: 'amp_10p15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 13(10P15.1) MUTATED | 121 | 29 | 14 | 64 | 41 | 25 |
AMP PEAK 13(10P15.1) WILD-TYPE | 57 | 214 | 183 | 116 | 143 | 33 |
Figure S124. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S125. Gene #13: 'amp_10p15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 13(10P15.1) MUTATED | 42 | 80 | 164 |
AMP PEAK 13(10P15.1) WILD-TYPE | 264 | 342 | 133 |
Figure S125. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D13V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S126. Gene #13: 'amp_10p15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 13(10P15.1) MUTATED | 11 | 20 | 101 | 90 | 64 |
AMP PEAK 13(10P15.1) WILD-TYPE | 163 | 166 | 304 | 44 | 62 |
Figure S126. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D13V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S127. Gene #13: 'amp_10p15.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 13(10P15.1) MUTATED | 45 | 34 | 111 |
AMP PEAK 13(10P15.1) WILD-TYPE | 204 | 222 | 98 |
Figure S127. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D13V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S128. Gene #13: 'amp_10p15.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 13(10P15.1) MUTATED | 81 | 7 | 39 | 24 | 10 | 29 |
AMP PEAK 13(10P15.1) WILD-TYPE | 46 | 60 | 154 | 111 | 115 | 38 |
Figure S128. Get High-res Image Gene #13: 'amp_10p15.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V12.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S129. Gene #14: 'amp_10q22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 14(10Q22.3) MUTATED | 6 | 3 | 16 | 18 | 9 | 23 | 8 | 3 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 15 | 33 | 103 | 78 | 100 | 49 | 12 | 37 |
Figure S129. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D14V1.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.02
Table S130. Gene #14: 'amp_10q22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 14(10Q22.3) MUTATED | 11 | 17 | 36 | 17 | 5 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 90 | 135 | 78 | 71 | 53 |
Figure S130. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D14V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S131. Gene #14: 'amp_10q22.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 14(10Q22.3) MUTATED | 21 | 39 | 15 | 65 | 6 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 378 | 201 | 84 | 199 | 36 |
Figure S131. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D14V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S132. Gene #14: 'amp_10q22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 14(10Q22.3) MUTATED | 33 | 10 | 20 | 41 | 30 | 4 | 8 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 157 | 133 | 214 | 120 | 214 | 48 | 8 |
Figure S132. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D14V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S133. Gene #14: 'amp_10q22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 14(10Q22.3) MUTATED | 30 | 15 | 13 | 46 | 26 | 16 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 148 | 228 | 184 | 134 | 158 | 42 |
Figure S133. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.06
Table S134. Gene #14: 'amp_10q22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 14(10Q22.3) MUTATED | 26 | 57 | 59 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 280 | 365 | 238 |
Figure S134. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D14V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S135. Gene #14: 'amp_10q22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 14(10Q22.3) MUTATED | 9 | 12 | 70 | 23 | 28 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 165 | 174 | 335 | 111 | 98 |
Figure S135. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D14V10.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.084
Table S136. Gene #14: 'amp_10q22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 14(10Q22.3) MUTATED | 36 | 18 | 40 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 213 | 238 | 169 |
Figure S136. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D14V11.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S137. Gene #14: 'amp_10q22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 14(10Q22.3) MUTATED | 19 | 4 | 34 | 12 | 6 | 19 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 108 | 63 | 159 | 123 | 119 | 48 |
Figure S137. Get High-res Image Gene #14: 'amp_10q22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D14V12.png)
P value = 0.00093 (Fisher's exact test), Q value = 0.16
Table S138. Gene #15: 'amp_11p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 15(11P13) MUTATED | 28 | 26 | 34 | 25 | 4 |
AMP PEAK 15(11P13) WILD-TYPE | 73 | 126 | 80 | 63 | 54 |
Figure S138. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D15V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S139. Gene #15: 'amp_11p13' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 15(11P13) MUTATED | 32 | 73 | 17 | 87 | 8 |
AMP PEAK 15(11P13) WILD-TYPE | 367 | 167 | 82 | 177 | 34 |
Figure S139. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #3: 'CN_CNMF'
![](D15V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S140. Gene #15: 'amp_11p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 15(11P13) MUTATED | 61 | 13 | 27 | 38 | 66 | 9 | 3 |
AMP PEAK 15(11P13) WILD-TYPE | 129 | 130 | 207 | 123 | 178 | 43 | 13 |
Figure S140. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D15V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S141. Gene #15: 'amp_11p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 15(11P13) MUTATED | 59 | 35 | 14 | 51 | 49 | 9 |
AMP PEAK 15(11P13) WILD-TYPE | 119 | 208 | 183 | 129 | 135 | 49 |
Figure S141. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D15V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S142. Gene #15: 'amp_11p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 15(11P13) MUTATED | 32 | 88 | 94 |
AMP PEAK 15(11P13) WILD-TYPE | 274 | 334 | 203 |
Figure S142. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D15V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S143. Gene #15: 'amp_11p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 15(11P13) MUTATED | 10 | 31 | 92 | 39 | 42 |
AMP PEAK 15(11P13) WILD-TYPE | 164 | 155 | 313 | 95 | 84 |
Figure S143. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D15V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S144. Gene #15: 'amp_11p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 15(11P13) MUTATED | 50 | 25 | 61 |
AMP PEAK 15(11P13) WILD-TYPE | 199 | 231 | 148 |
Figure S144. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D15V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S145. Gene #15: 'amp_11p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 15(11P13) MUTATED | 41 | 5 | 49 | 21 | 8 | 12 |
AMP PEAK 15(11P13) WILD-TYPE | 86 | 62 | 144 | 114 | 117 | 55 |
Figure S145. Get High-res Image Gene #15: 'amp_11p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D15V12.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.049
Table S146. Gene #16: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 16(11Q13.3) MUTATED | 13 | 18 | 62 | 28 | 33 | 37 | 11 | 13 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 8 | 18 | 57 | 68 | 76 | 35 | 9 | 27 |
Figure S146. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D16V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S147. Gene #16: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 16(11Q13.3) MUTATED | 55 | 57 | 68 | 24 | 11 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 46 | 95 | 46 | 64 | 47 |
Figure S147. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D16V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S148. Gene #16: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 16(11Q13.3) MUTATED | 69 | 174 | 28 | 100 | 15 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 330 | 66 | 71 | 164 | 27 |
Figure S148. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D16V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S149. Gene #16: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 16(11Q13.3) MUTATED | 48 | 60 | 95 | 22 | 25 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 84 | 137 | 82 | 66 | 103 |
Figure S149. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D16V4.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.11
Table S150. Gene #16: 'amp_11q13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 16(11Q13.3) MUTATED | 17 | 49 | 29 | 60 | 13 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 47 | 57 | 61 | 47 | 18 |
Figure S150. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D16V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S151. Gene #16: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 16(11Q13.3) MUTATED | 61 | 40 | 55 | 69 | 136 | 16 | 9 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 129 | 103 | 179 | 92 | 108 | 36 | 7 |
Figure S151. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D16V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S152. Gene #16: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 16(11Q13.3) MUTATED | 58 | 71 | 36 | 93 | 108 | 20 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 120 | 172 | 161 | 87 | 76 | 38 |
Figure S152. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D16V8.png)
P value = 0.00054 (Fisher's exact test), Q value = 0.099
Table S153. Gene #16: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 16(11Q13.3) MUTATED | 86 | 176 | 116 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 220 | 246 | 181 |
Figure S153. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D16V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S154. Gene #16: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 16(11Q13.3) MUTATED | 36 | 71 | 178 | 43 | 50 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 138 | 115 | 227 | 91 | 76 |
Figure S154. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D16V10.png)
P value = 0.00028 (Fisher's exact test), Q value = 0.055
Table S155. Gene #16: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 16(11Q13.3) MUTATED | 48 | 13 | 76 | 59 | 28 | 24 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 79 | 54 | 117 | 76 | 97 | 43 |
Figure S155. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V12.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.02
Table S156. Gene #17: 'amp_11q14.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 17(11Q14.1) MUTATED | 30 | 36 | 45 | 30 | 5 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 71 | 116 | 69 | 58 | 53 |
Figure S156. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D17V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S157. Gene #17: 'amp_11q14.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 17(11Q14.1) MUTATED | 40 | 94 | 18 | 97 | 9 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 359 | 146 | 81 | 167 | 33 |
Figure S157. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D17V3.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.02
Table S158. Gene #17: 'amp_11q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 17(11Q14.1) MUTATED | 43 | 32 | 52 | 18 | 16 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 89 | 165 | 125 | 70 | 112 |
Figure S158. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D17V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S159. Gene #17: 'amp_11q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 17(11Q14.1) MUTATED | 64 | 24 | 34 | 49 | 75 | 7 | 5 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 126 | 119 | 200 | 112 | 169 | 45 | 11 |
Figure S159. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D17V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S160. Gene #17: 'amp_11q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 17(11Q14.1) MUTATED | 61 | 38 | 25 | 63 | 54 | 17 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 117 | 205 | 172 | 117 | 130 | 41 |
Figure S160. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D17V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S161. Gene #17: 'amp_11q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 17(11Q14.1) MUTATED | 45 | 104 | 103 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 261 | 318 | 194 |
Figure S161. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D17V9.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.018
Table S162. Gene #17: 'amp_11q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 17(11Q14.1) MUTATED | 21 | 43 | 104 | 47 | 37 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 153 | 143 | 301 | 87 | 89 |
Figure S162. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D17V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S163. Gene #17: 'amp_11q14.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 17(11Q14.1) MUTATED | 55 | 38 | 70 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 194 | 218 | 139 |
Figure S163. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D17V11.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S164. Gene #17: 'amp_11q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 17(11Q14.1) MUTATED | 44 | 10 | 51 | 28 | 12 | 18 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 83 | 57 | 142 | 107 | 113 | 49 |
Figure S164. Get High-res Image Gene #17: 'amp_11q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D17V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S165. Gene #18: 'amp_12p13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 18(12P13.33) MUTATED | 3 | 4 | 36 | 53 | 18 | 29 | 3 | 3 |
AMP PEAK 18(12P13.33) WILD-TYPE | 18 | 32 | 83 | 43 | 91 | 43 | 17 | 37 |
Figure S165. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D18V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S166. Gene #18: 'amp_12p13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 18(12P13.33) MUTATED | 30 | 16 | 44 | 49 | 10 |
AMP PEAK 18(12P13.33) WILD-TYPE | 71 | 136 | 70 | 39 | 48 |
Figure S166. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D18V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S167. Gene #18: 'amp_12p13.33' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 18(12P13.33) MUTATED | 19 | 83 | 29 | 135 | 11 |
AMP PEAK 18(12P13.33) WILD-TYPE | 380 | 157 | 70 | 129 | 31 |
Figure S167. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #3: 'CN_CNMF'
![](D18V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S168. Gene #18: 'amp_12p13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 18(12P13.33) MUTATED | 71 | 36 | 44 | 10 | 16 |
AMP PEAK 18(12P13.33) WILD-TYPE | 61 | 161 | 133 | 78 | 112 |
Figure S168. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D18V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S169. Gene #18: 'amp_12p13.33' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 18(12P13.33) MUTATED | 71 | 30 | 19 |
AMP PEAK 18(12P13.33) WILD-TYPE | 78 | 102 | 98 |
Figure S169. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D18V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S170. Gene #18: 'amp_12p13.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 18(12P13.33) MUTATED | 15 | 15 | 47 | 33 | 10 |
AMP PEAK 18(12P13.33) WILD-TYPE | 49 | 91 | 43 | 74 | 21 |
Figure S170. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D18V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S171. Gene #18: 'amp_12p13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 18(12P13.33) MUTATED | 107 | 13 | 32 | 49 | 69 | 4 | 3 |
AMP PEAK 18(12P13.33) WILD-TYPE | 83 | 130 | 202 | 112 | 175 | 48 | 13 |
Figure S171. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D18V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S172. Gene #18: 'amp_12p13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 18(12P13.33) MUTATED | 101 | 29 | 22 | 60 | 51 | 14 |
AMP PEAK 18(12P13.33) WILD-TYPE | 77 | 214 | 175 | 120 | 133 | 44 |
Figure S172. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S173. Gene #18: 'amp_12p13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 18(12P13.33) MUTATED | 41 | 87 | 140 |
AMP PEAK 18(12P13.33) WILD-TYPE | 265 | 335 | 157 |
Figure S173. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D18V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S174. Gene #18: 'amp_12p13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 18(12P13.33) MUTATED | 14 | 28 | 104 | 76 | 46 |
AMP PEAK 18(12P13.33) WILD-TYPE | 160 | 158 | 301 | 58 | 80 |
Figure S174. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D18V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S175. Gene #18: 'amp_12p13.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 18(12P13.33) MUTATED | 41 | 35 | 101 |
AMP PEAK 18(12P13.33) WILD-TYPE | 208 | 221 | 108 |
Figure S175. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D18V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S176. Gene #18: 'amp_12p13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 18(12P13.33) MUTATED | 71 | 6 | 43 | 27 | 11 | 19 |
AMP PEAK 18(12P13.33) WILD-TYPE | 56 | 61 | 150 | 108 | 114 | 48 |
Figure S176. Get High-res Image Gene #18: 'amp_12p13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S177. Gene #19: 'amp_12q15' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 19(12Q15) MUTATED | 4 | 6 | 54 | 21 | 20 | 35 | 7 | 6 |
AMP PEAK 19(12Q15) WILD-TYPE | 17 | 30 | 65 | 75 | 89 | 37 | 13 | 34 |
Figure S177. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D19V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S178. Gene #19: 'amp_12q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 19(12Q15) MUTATED | 43 | 24 | 56 | 18 | 12 |
AMP PEAK 19(12Q15) WILD-TYPE | 58 | 128 | 58 | 70 | 46 |
Figure S178. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D19V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S179. Gene #19: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 19(12Q15) MUTATED | 29 | 130 | 32 | 68 | 10 |
AMP PEAK 19(12Q15) WILD-TYPE | 370 | 110 | 67 | 196 | 32 |
Figure S179. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
![](D19V3.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.049
Table S180. Gene #19: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 19(12Q15) MUTATED | 24 | 50 | 61 | 13 | 20 |
AMP PEAK 19(12Q15) WILD-TYPE | 108 | 147 | 116 | 75 | 108 |
Figure S180. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D19V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S181. Gene #19: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 19(12Q15) MUTATED | 31 | 17 | 42 | 61 | 102 | 11 | 4 |
AMP PEAK 19(12Q15) WILD-TYPE | 159 | 126 | 192 | 100 | 142 | 41 | 12 |
Figure S181. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D19V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S182. Gene #19: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 19(12Q15) MUTATED | 29 | 40 | 28 | 85 | 74 | 12 |
AMP PEAK 19(12Q15) WILD-TYPE | 149 | 203 | 169 | 95 | 110 | 46 |
Figure S182. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D19V8.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S183. Gene #19: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 19(12Q15) MUTATED | 52 | 134 | 77 |
AMP PEAK 19(12Q15) WILD-TYPE | 254 | 288 | 220 |
Figure S183. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D19V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S184. Gene #19: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 19(12Q15) MUTATED | 20 | 44 | 141 | 21 | 37 |
AMP PEAK 19(12Q15) WILD-TYPE | 154 | 142 | 264 | 113 | 89 |
Figure S184. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D19V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S185. Gene #19: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 19(12Q15) MUTATED | 17 | 7 | 69 | 39 | 16 | 17 |
AMP PEAK 19(12Q15) WILD-TYPE | 110 | 60 | 124 | 96 | 109 | 50 |
Figure S185. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S186. Gene #20: 'amp_13q34' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 20(13Q34) MUTATED | 3 | 5 | 19 | 43 | 16 | 10 | 4 | 0 |
AMP PEAK 20(13Q34) WILD-TYPE | 18 | 31 | 100 | 53 | 93 | 62 | 16 | 40 |
Figure S186. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D20V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S187. Gene #20: 'amp_13q34' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 20(13Q34) MUTATED | 17 | 14 | 23 | 38 | 8 |
AMP PEAK 20(13Q34) WILD-TYPE | 84 | 138 | 91 | 50 | 50 |
Figure S187. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D20V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S188. Gene #20: 'amp_13q34' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 20(13Q34) MUTATED | 25 | 39 | 12 | 94 | 6 |
AMP PEAK 20(13Q34) WILD-TYPE | 374 | 201 | 87 | 170 | 36 |
Figure S188. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #3: 'CN_CNMF'
![](D20V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S189. Gene #20: 'amp_13q34' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 20(13Q34) MUTATED | 50 | 17 | 24 | 5 | 14 |
AMP PEAK 20(13Q34) WILD-TYPE | 82 | 180 | 153 | 83 | 114 |
Figure S189. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D20V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S190. Gene #20: 'amp_13q34' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 20(13Q34) MUTATED | 50 | 22 | 12 |
AMP PEAK 20(13Q34) WILD-TYPE | 99 | 110 | 105 |
Figure S190. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D20V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S191. Gene #20: 'amp_13q34' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 20(13Q34) MUTATED | 10 | 9 | 39 | 17 | 9 |
AMP PEAK 20(13Q34) WILD-TYPE | 54 | 97 | 51 | 90 | 22 |
Figure S191. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D20V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S192. Gene #20: 'amp_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 20(13Q34) MUTATED | 77 | 9 | 23 | 26 | 34 | 4 | 3 |
AMP PEAK 20(13Q34) WILD-TYPE | 113 | 134 | 211 | 135 | 210 | 48 | 13 |
Figure S192. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D20V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S193. Gene #20: 'amp_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 20(13Q34) MUTATED | 72 | 15 | 18 | 28 | 27 | 16 |
AMP PEAK 20(13Q34) WILD-TYPE | 106 | 228 | 179 | 152 | 157 | 42 |
Figure S193. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D20V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S194. Gene #20: 'amp_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 20(13Q34) MUTATED | 28 | 43 | 102 |
AMP PEAK 20(13Q34) WILD-TYPE | 278 | 379 | 195 |
Figure S194. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D20V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S195. Gene #20: 'amp_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 20(13Q34) MUTATED | 9 | 14 | 58 | 54 | 38 |
AMP PEAK 20(13Q34) WILD-TYPE | 165 | 172 | 347 | 80 | 88 |
Figure S195. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D20V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S196. Gene #20: 'amp_13q34' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 20(13Q34) MUTATED | 24 | 21 | 62 |
AMP PEAK 20(13Q34) WILD-TYPE | 225 | 235 | 147 |
Figure S196. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D20V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S197. Gene #20: 'amp_13q34' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 20(13Q34) MUTATED | 44 | 2 | 20 | 20 | 6 | 15 |
AMP PEAK 20(13Q34) WILD-TYPE | 83 | 65 | 173 | 115 | 119 | 52 |
Figure S197. Get High-res Image Gene #20: 'amp_13q34' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V12.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S198. Gene #21: 'amp_14q21.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 21(14Q21.1) MUTATED | 5 | 9 | 33 | 11 | 21 | 26 | 6 | 0 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 16 | 27 | 86 | 85 | 88 | 46 | 14 | 40 |
Figure S198. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D21V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S199. Gene #21: 'amp_14q21.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 21(14Q21.1) MUTATED | 29 | 24 | 42 | 8 | 8 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 72 | 128 | 72 | 80 | 50 |
Figure S199. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D21V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S200. Gene #21: 'amp_14q21.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 21(14Q21.1) MUTATED | 34 | 92 | 25 | 52 | 10 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 365 | 148 | 74 | 212 | 32 |
Figure S200. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D21V3.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S201. Gene #21: 'amp_14q21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 21(14Q21.1) MUTATED | 17 | 33 | 55 | 12 | 15 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 115 | 164 | 122 | 76 | 113 |
Figure S201. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D21V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S202. Gene #21: 'amp_14q21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 21(14Q21.1) MUTATED | 21 | 17 | 43 | 51 | 72 | 3 | 4 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 169 | 126 | 191 | 110 | 172 | 49 | 12 |
Figure S202. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D21V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S203. Gene #21: 'amp_14q21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 21(14Q21.1) MUTATED | 17 | 27 | 31 | 73 | 46 | 17 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 161 | 216 | 166 | 107 | 138 | 41 |
Figure S203. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D21V8.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.016
Table S204. Gene #21: 'amp_14q21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 21(14Q21.1) MUTATED | 39 | 110 | 58 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 267 | 312 | 239 |
Figure S204. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D21V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S205. Gene #21: 'amp_14q21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 21(14Q21.1) MUTATED | 16 | 22 | 122 | 11 | 36 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 158 | 164 | 283 | 123 | 90 |
Figure S205. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D21V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S206. Gene #21: 'amp_14q21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 21(14Q21.1) MUTATED | 14 | 5 | 61 | 32 | 11 | 19 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 113 | 62 | 132 | 103 | 114 | 48 |
Figure S206. Get High-res Image Gene #21: 'amp_14q21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D21V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S207. Gene #22: 'amp_15q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 22(15Q26.3) MUTATED | 3 | 8 | 31 | 32 | 4 | 16 | 8 | 2 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 18 | 28 | 88 | 64 | 105 | 56 | 12 | 38 |
Figure S207. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D22V1.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.031
Table S208. Gene #22: 'amp_15q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 22(15Q26.3) MUTATED | 23 | 23 | 25 | 30 | 3 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 78 | 129 | 89 | 58 | 55 |
Figure S208. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D22V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S209. Gene #22: 'amp_15q26.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 22(15Q26.3) MUTATED | 28 | 59 | 8 | 90 | 2 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 371 | 181 | 91 | 174 | 40 |
Figure S209. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D22V3.png)
P value = 0.00115 (Fisher's exact test), Q value = 0.19
Table S210. Gene #22: 'amp_15q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 22(15Q26.3) MUTATED | 36 | 19 | 27 | 14 | 17 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 96 | 178 | 150 | 74 | 111 |
Figure S210. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D22V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S211. Gene #22: 'amp_15q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 22(15Q26.3) MUTATED | 63 | 15 | 19 | 27 | 56 | 3 | 3 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 127 | 128 | 215 | 134 | 188 | 49 | 13 |
Figure S211. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D22V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S212. Gene #22: 'amp_15q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 22(15Q26.3) MUTATED | 60 | 21 | 18 | 34 | 46 | 7 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 118 | 222 | 179 | 146 | 138 | 51 |
Figure S212. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D22V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S213. Gene #22: 'amp_15q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 22(15Q26.3) MUTATED | 33 | 64 | 83 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 273 | 358 | 214 |
Figure S213. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D22V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S214. Gene #22: 'amp_15q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 22(15Q26.3) MUTATED | 8 | 21 | 71 | 44 | 36 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 166 | 165 | 334 | 90 | 90 |
Figure S214. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D22V10.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.031
Table S215. Gene #22: 'amp_15q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 22(15Q26.3) MUTATED | 41 | 28 | 54 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 208 | 228 | 155 |
Figure S215. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D22V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S216. Gene #22: 'amp_15q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 22(15Q26.3) MUTATED | 39 | 6 | 38 | 20 | 8 | 12 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 88 | 61 | 155 | 115 | 117 | 55 |
Figure S216. Get High-res Image Gene #22: 'amp_15q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D22V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S217. Gene #23: 'amp_17q12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 23(17Q12) MUTATED | 9 | 11 | 53 | 19 | 14 | 49 | 7 | 4 |
AMP PEAK 23(17Q12) WILD-TYPE | 12 | 25 | 66 | 77 | 95 | 23 | 13 | 36 |
Figure S217. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D23V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S218. Gene #23: 'amp_17q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 23(17Q12) MUTATED | 40 | 28 | 71 | 16 | 11 |
AMP PEAK 23(17Q12) WILD-TYPE | 61 | 124 | 43 | 72 | 47 |
Figure S218. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D23V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S219. Gene #23: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 23(17Q12) MUTATED | 59 | 159 | 25 | 64 | 13 |
AMP PEAK 23(17Q12) WILD-TYPE | 340 | 81 | 74 | 200 | 29 |
Figure S219. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
![](D23V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S220. Gene #23: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 23(17Q12) MUTATED | 33 | 46 | 85 | 23 | 29 |
AMP PEAK 23(17Q12) WILD-TYPE | 99 | 151 | 92 | 65 | 99 |
Figure S220. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D23V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S221. Gene #23: 'amp_17q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 23(17Q12) MUTATED | 9 | 28 | 20 | 41 | 31 |
AMP PEAK 23(17Q12) WILD-TYPE | 55 | 78 | 70 | 66 | 0 |
Figure S221. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D23V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S222. Gene #23: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 23(17Q12) MUTATED | 35 | 28 | 37 | 101 | 108 | 6 | 4 |
AMP PEAK 23(17Q12) WILD-TYPE | 155 | 115 | 197 | 60 | 136 | 46 | 12 |
Figure S222. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D23V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S223. Gene #23: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 23(17Q12) MUTATED | 31 | 44 | 28 | 91 | 88 | 37 |
AMP PEAK 23(17Q12) WILD-TYPE | 147 | 199 | 169 | 89 | 96 | 21 |
Figure S223. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.2
Table S224. Gene #23: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 23(17Q12) MUTATED | 70 | 148 | 95 |
AMP PEAK 23(17Q12) WILD-TYPE | 236 | 274 | 202 |
Figure S224. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D23V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S225. Gene #23: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 23(17Q12) MUTATED | 25 | 52 | 164 | 20 | 52 |
AMP PEAK 23(17Q12) WILD-TYPE | 149 | 134 | 241 | 114 | 74 |
Figure S225. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D23V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S226. Gene #23: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 23(17Q12) MUTATED | 24 | 14 | 70 | 53 | 16 | 41 |
AMP PEAK 23(17Q12) WILD-TYPE | 103 | 53 | 123 | 82 | 109 | 26 |
Figure S226. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S227. Gene #24: 'amp_17q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 24(17Q23.1) MUTATED | 9 | 17 | 81 | 29 | 16 | 44 | 11 | 9 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 12 | 19 | 38 | 67 | 93 | 28 | 9 | 31 |
Figure S227. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D24V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S228. Gene #24: 'amp_17q23.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 24(17Q23.1) MUTATED | 62 | 45 | 71 | 25 | 13 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 39 | 107 | 43 | 63 | 45 |
Figure S228. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D24V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S229. Gene #24: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 24(17Q23.1) MUTATED | 69 | 189 | 28 | 113 | 18 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 330 | 51 | 71 | 151 | 24 |
Figure S229. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D24V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S230. Gene #24: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 24(17Q23.1) MUTATED | 52 | 61 | 99 | 28 | 40 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 80 | 136 | 78 | 60 | 88 |
Figure S230. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D24V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S231. Gene #24: 'amp_17q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 24(17Q23.1) MUTATED | 13 | 40 | 26 | 68 | 19 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 51 | 66 | 64 | 39 | 12 |
Figure S231. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D24V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S232. Gene #24: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 24(17Q23.1) MUTATED | 66 | 40 | 40 | 91 | 156 | 14 | 9 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 124 | 103 | 194 | 70 | 88 | 38 | 7 |
Figure S232. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D24V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S233. Gene #24: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 24(17Q23.1) MUTATED | 59 | 68 | 32 | 111 | 117 | 29 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 119 | 175 | 165 | 69 | 67 | 29 |
Figure S233. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D24V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S234. Gene #24: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 24(17Q23.1) MUTATED | 80 | 187 | 142 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 226 | 235 | 155 |
Figure S234. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D24V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S235. Gene #24: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 24(17Q23.1) MUTATED | 33 | 71 | 197 | 43 | 65 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 141 | 115 | 208 | 91 | 61 |
Figure S235. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D24V10.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.016
Table S236. Gene #24: 'amp_17q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 24(17Q23.1) MUTATED | 97 | 74 | 102 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 152 | 182 | 107 |
Figure S236. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D24V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S237. Gene #24: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 24(17Q23.1) MUTATED | 46 | 19 | 83 | 63 | 23 | 39 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 81 | 48 | 110 | 72 | 102 | 28 |
Figure S237. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D24V12.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.018
Table S238. Gene #25: 'amp_19p13.12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 25(19P13.12) MUTATED | 5 | 6 | 22 | 40 | 16 | 11 | 5 | 4 |
AMP PEAK 25(19P13.12) WILD-TYPE | 16 | 30 | 97 | 56 | 93 | 61 | 15 | 36 |
Figure S238. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D25V1.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.052
Table S239. Gene #25: 'amp_19p13.12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 25(19P13.12) MUTATED | 19 | 21 | 23 | 35 | 11 |
AMP PEAK 25(19P13.12) WILD-TYPE | 82 | 131 | 91 | 53 | 47 |
Figure S239. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D25V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S240. Gene #25: 'amp_19p13.12' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 25(19P13.12) MUTATED | 36 | 47 | 30 | 98 | 10 |
AMP PEAK 25(19P13.12) WILD-TYPE | 363 | 193 | 69 | 166 | 32 |
Figure S240. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #3: 'CN_CNMF'
![](D25V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S241. Gene #25: 'amp_19p13.12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 25(19P13.12) MUTATED | 47 | 25 | 31 | 16 | 26 |
AMP PEAK 25(19P13.12) WILD-TYPE | 85 | 172 | 146 | 72 | 102 |
Figure S241. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D25V4.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.15
Table S242. Gene #25: 'amp_19p13.12' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 25(19P13.12) MUTATED | 49 | 25 | 17 |
AMP PEAK 25(19P13.12) WILD-TYPE | 100 | 107 | 100 |
Figure S242. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D25V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S243. Gene #25: 'amp_19p13.12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 25(19P13.12) MUTATED | 78 | 27 | 29 | 32 | 42 | 6 | 5 |
AMP PEAK 25(19P13.12) WILD-TYPE | 112 | 116 | 205 | 129 | 202 | 46 | 11 |
Figure S243. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D25V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S244. Gene #25: 'amp_19p13.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 25(19P13.12) MUTATED | 72 | 41 | 22 | 35 | 36 | 13 |
AMP PEAK 25(19P13.12) WILD-TYPE | 106 | 202 | 175 | 145 | 148 | 45 |
Figure S244. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D25V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S245. Gene #25: 'amp_19p13.12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 25(19P13.12) MUTATED | 55 | 60 | 100 |
AMP PEAK 25(19P13.12) WILD-TYPE | 251 | 362 | 197 |
Figure S245. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D25V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S246. Gene #25: 'amp_19p13.12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 25(19P13.12) MUTATED | 27 | 23 | 73 | 56 | 36 |
AMP PEAK 25(19P13.12) WILD-TYPE | 147 | 163 | 332 | 78 | 90 |
Figure S246. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D25V10.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S247. Gene #25: 'amp_19p13.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 25(19P13.12) MUTATED | 41 | 46 | 68 |
AMP PEAK 25(19P13.12) WILD-TYPE | 208 | 210 | 141 |
Figure S247. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D25V11.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.0083
Table S248. Gene #25: 'amp_19p13.12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 25(19P13.12) MUTATED | 49 | 13 | 33 | 25 | 17 | 18 |
AMP PEAK 25(19P13.12) WILD-TYPE | 78 | 54 | 160 | 110 | 108 | 49 |
Figure S248. Get High-res Image Gene #25: 'amp_19p13.12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D25V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S249. Gene #26: 'amp_19q12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 26(19Q12) MUTATED | 4 | 5 | 29 | 55 | 15 | 20 | 7 | 5 |
AMP PEAK 26(19Q12) WILD-TYPE | 17 | 31 | 90 | 41 | 94 | 52 | 13 | 35 |
Figure S249. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D26V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S250. Gene #26: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 26(19Q12) MUTATED | 20 | 24 | 35 | 50 | 11 |
AMP PEAK 26(19Q12) WILD-TYPE | 81 | 128 | 79 | 38 | 47 |
Figure S250. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D26V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S251. Gene #26: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 26(19Q12) MUTATED | 36 | 54 | 32 | 138 | 13 |
AMP PEAK 26(19Q12) WILD-TYPE | 363 | 186 | 67 | 126 | 29 |
Figure S251. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
![](D26V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S252. Gene #26: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 26(19Q12) MUTATED | 69 | 29 | 43 | 15 | 25 |
AMP PEAK 26(19Q12) WILD-TYPE | 63 | 168 | 134 | 73 | 103 |
Figure S252. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D26V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S253. Gene #26: 'amp_19q12' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 26(19Q12) MUTATED | 64 | 22 | 24 |
AMP PEAK 26(19Q12) WILD-TYPE | 85 | 110 | 93 |
Figure S253. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D26V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S254. Gene #26: 'amp_19q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 26(19Q12) MUTATED | 15 | 21 | 46 | 18 | 10 |
AMP PEAK 26(19Q12) WILD-TYPE | 49 | 85 | 44 | 89 | 21 |
Figure S254. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D26V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S255. Gene #26: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 26(19Q12) MUTATED | 106 | 24 | 31 | 48 | 52 | 5 | 6 |
AMP PEAK 26(19Q12) WILD-TYPE | 84 | 119 | 203 | 113 | 192 | 47 | 10 |
Figure S255. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D26V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S256. Gene #26: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 26(19Q12) MUTATED | 101 | 40 | 22 | 45 | 41 | 23 |
AMP PEAK 26(19Q12) WILD-TYPE | 77 | 203 | 175 | 135 | 143 | 35 |
Figure S256. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D26V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S257. Gene #26: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 26(19Q12) MUTATED | 51 | 78 | 140 |
AMP PEAK 26(19Q12) WILD-TYPE | 255 | 344 | 157 |
Figure S257. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D26V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S258. Gene #26: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 26(19Q12) MUTATED | 24 | 26 | 91 | 75 | 53 |
AMP PEAK 26(19Q12) WILD-TYPE | 150 | 160 | 314 | 59 | 73 |
Figure S258. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D26V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S259. Gene #26: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 26(19Q12) MUTATED | 46 | 48 | 97 |
AMP PEAK 26(19Q12) WILD-TYPE | 203 | 208 | 112 |
Figure S259. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D26V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S260. Gene #26: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 26(19Q12) MUTATED | 70 | 12 | 44 | 30 | 14 | 21 |
AMP PEAK 26(19Q12) WILD-TYPE | 57 | 55 | 149 | 105 | 111 | 46 |
Figure S260. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D26V12.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.082
Table S261. Gene #27: 'amp_19q13.42' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 27(19Q13.42) MUTATED | 5 | 8 | 36 | 40 | 17 | 20 | 10 | 6 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 16 | 28 | 83 | 56 | 92 | 52 | 10 | 34 |
Figure S261. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D27V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S262. Gene #27: 'amp_19q13.42' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 27(19Q13.42) MUTATED | 39 | 72 | 34 | 106 | 17 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 360 | 168 | 65 | 158 | 25 |
Figure S262. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #3: 'CN_CNMF'
![](D27V3.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.16
Table S263. Gene #27: 'amp_19q13.42' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 27(19Q13.42) MUTATED | 42 | 35 | 56 | 19 | 21 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 90 | 162 | 121 | 69 | 107 |
Figure S263. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D27V4.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.2
Table S264. Gene #27: 'amp_19q13.42' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 27(19Q13.42) MUTATED | 57 | 26 | 27 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 92 | 106 | 90 |
Figure S264. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D27V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S265. Gene #27: 'amp_19q13.42' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 27(19Q13.42) MUTATED | 67 | 29 | 34 | 48 | 74 | 6 | 9 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 123 | 114 | 200 | 113 | 170 | 46 | 7 |
Figure S265. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D27V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S266. Gene #27: 'amp_19q13.42' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 27(19Q13.42) MUTATED | 61 | 47 | 25 | 58 | 58 | 18 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 117 | 196 | 172 | 122 | 126 | 40 |
Figure S266. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.023
Table S267. Gene #27: 'amp_19q13.42' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 27(19Q13.42) MUTATED | 62 | 99 | 103 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 244 | 323 | 194 |
Figure S267. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D27V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S268. Gene #27: 'amp_19q13.42' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 27(19Q13.42) MUTATED | 28 | 36 | 109 | 44 | 47 |
AMP PEAK 27(19Q13.42) WILD-TYPE | 146 | 150 | 296 | 90 | 79 |
Figure S268. Get High-res Image Gene #27: 'amp_19q13.42' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D27V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S269. Gene #28: 'amp_20q13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
AMP PEAK 28(20Q13.2) MUTATED | 12 | 18 | 85 | 52 | 35 | 49 | 15 | 10 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 9 | 18 | 34 | 44 | 74 | 23 | 5 | 30 |
Figure S269. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D28V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S270. Gene #28: 'amp_20q13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
AMP PEAK 28(20Q13.2) MUTATED | 73 | 56 | 86 | 44 | 17 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 28 | 96 | 28 | 44 | 41 |
Figure S270. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D28V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S271. Gene #28: 'amp_20q13.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
AMP PEAK 28(20Q13.2) MUTATED | 78 | 197 | 60 | 175 | 25 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 321 | 43 | 39 | 89 | 17 |
Figure S271. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D28V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S272. Gene #28: 'amp_20q13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
AMP PEAK 28(20Q13.2) MUTATED | 83 | 78 | 113 | 29 | 49 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 49 | 119 | 64 | 59 | 79 |
Figure S272. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D28V4.png)
P value = 6e-04 (Fisher's exact test), Q value = 0.11
Table S273. Gene #28: 'amp_20q13.2' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
AMP PEAK 28(20Q13.2) MUTATED | 101 | 66 | 54 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 48 | 66 | 63 |
Figure S273. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D28V5.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.053
Table S274. Gene #28: 'amp_20q13.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
AMP PEAK 28(20Q13.2) MUTATED | 29 | 44 | 53 | 73 | 22 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 35 | 62 | 37 | 34 | 9 |
Figure S274. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D28V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S275. Gene #28: 'amp_20q13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
AMP PEAK 28(20Q13.2) MUTATED | 104 | 45 | 79 | 106 | 170 | 18 | 10 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 86 | 98 | 155 | 55 | 74 | 34 | 6 |
Figure S275. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D28V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S276. Gene #28: 'amp_20q13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
AMP PEAK 28(20Q13.2) MUTATED | 96 | 86 | 52 | 130 | 135 | 33 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 82 | 157 | 145 | 50 | 49 | 25 |
Figure S276. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S277. Gene #28: 'amp_20q13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
AMP PEAK 28(20Q13.2) MUTATED | 113 | 233 | 181 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 193 | 189 | 116 |
Figure S277. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D28V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S278. Gene #28: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
AMP PEAK 28(20Q13.2) MUTATED | 49 | 80 | 248 | 71 | 79 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 125 | 106 | 157 | 63 | 47 |
Figure S278. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D28V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S279. Gene #28: 'amp_20q13.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
AMP PEAK 28(20Q13.2) MUTATED | 140 | 95 | 129 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 109 | 161 | 80 |
Figure S279. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D28V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S280. Gene #28: 'amp_20q13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
AMP PEAK 28(20Q13.2) MUTATED | 72 | 22 | 123 | 69 | 36 | 42 |
AMP PEAK 28(20Q13.2) WILD-TYPE | 55 | 45 | 70 | 66 | 89 | 25 |
Figure S280. Get High-res Image Gene #28: 'amp_20q13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V12.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.016
Table S281. Gene #29: 'del_1p36.13' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 1(1P36.13) MUTATED | 9 | 11 | 61 | 42 | 31 | 46 | 7 | 12 |
DEL PEAK 1(1P36.13) WILD-TYPE | 12 | 25 | 58 | 54 | 78 | 26 | 13 | 28 |
Figure S281. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D29V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S282. Gene #29: 'del_1p36.13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 1(1P36.13) MUTATED | 57 | 39 | 67 | 39 | 17 |
DEL PEAK 1(1P36.13) WILD-TYPE | 44 | 113 | 47 | 49 | 41 |
Figure S282. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D29V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S283. Gene #29: 'del_1p36.13' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 1(1P36.13) MUTATED | 68 | 157 | 60 | 135 | 17 |
DEL PEAK 1(1P36.13) WILD-TYPE | 331 | 83 | 39 | 129 | 25 |
Figure S283. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #3: 'CN_CNMF'
![](D29V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S284. Gene #29: 'del_1p36.13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 1(1P36.13) MUTATED | 58 | 64 | 110 | 24 | 36 |
DEL PEAK 1(1P36.13) WILD-TYPE | 74 | 133 | 67 | 64 | 92 |
Figure S284. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D29V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S285. Gene #29: 'del_1p36.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 1(1P36.13) MUTATED | 79 | 32 | 82 | 89 | 127 | 18 | 7 |
DEL PEAK 1(1P36.13) WILD-TYPE | 111 | 111 | 152 | 72 | 117 | 34 | 9 |
Figure S285. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D29V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S286. Gene #29: 'del_1p36.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 1(1P36.13) MUTATED | 79 | 75 | 54 | 113 | 97 | 16 |
DEL PEAK 1(1P36.13) WILD-TYPE | 99 | 168 | 143 | 67 | 87 | 42 |
Figure S286. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S287. Gene #29: 'del_1p36.13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 1(1P36.13) MUTATED | 92 | 190 | 141 |
DEL PEAK 1(1P36.13) WILD-TYPE | 214 | 232 | 156 |
Figure S287. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D29V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S288. Gene #29: 'del_1p36.13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 1(1P36.13) MUTATED | 40 | 61 | 210 | 60 | 52 |
DEL PEAK 1(1P36.13) WILD-TYPE | 134 | 125 | 195 | 74 | 74 |
Figure S288. Get High-res Image Gene #29: 'del_1p36.13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D29V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S289. Gene #30: 'del_1p21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 2(1P21.2) MUTATED | 47 | 37 | 60 | 20 | 15 |
DEL PEAK 2(1P21.2) WILD-TYPE | 54 | 115 | 54 | 68 | 43 |
Figure S289. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D30V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S290. Gene #30: 'del_1p21.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 2(1P21.2) MUTATED | 62 | 129 | 57 | 84 | 13 |
DEL PEAK 2(1P21.2) WILD-TYPE | 337 | 111 | 42 | 180 | 29 |
Figure S290. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D30V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S291. Gene #30: 'del_1p21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 2(1P21.2) MUTATED | 36 | 54 | 86 | 22 | 26 |
DEL PEAK 2(1P21.2) WILD-TYPE | 96 | 143 | 91 | 66 | 102 |
Figure S291. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D30V4.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.06
Table S292. Gene #30: 'del_1p21.2' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 2(1P21.2) MUTATED | 61 | 50 | 23 |
DEL PEAK 2(1P21.2) WILD-TYPE | 88 | 82 | 94 |
Figure S292. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D30V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S293. Gene #30: 'del_1p21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 2(1P21.2) MUTATED | 43 | 30 | 75 | 79 | 103 | 9 | 4 |
DEL PEAK 2(1P21.2) WILD-TYPE | 147 | 113 | 159 | 82 | 141 | 43 | 12 |
Figure S293. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D30V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S294. Gene #30: 'del_1p21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 2(1P21.2) MUTATED | 39 | 67 | 47 | 101 | 74 | 15 |
DEL PEAK 2(1P21.2) WILD-TYPE | 139 | 176 | 150 | 79 | 110 | 43 |
Figure S294. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.00149 (Fisher's exact test), Q value = 0.24
Table S295. Gene #30: 'del_1p21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 2(1P21.2) MUTATED | 81 | 164 | 93 |
DEL PEAK 2(1P21.2) WILD-TYPE | 225 | 258 | 204 |
Figure S295. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D30V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S296. Gene #30: 'del_1p21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 2(1P21.2) MUTATED | 39 | 49 | 180 | 28 | 42 |
DEL PEAK 2(1P21.2) WILD-TYPE | 135 | 137 | 225 | 106 | 84 |
Figure S296. Get High-res Image Gene #30: 'del_1p21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D30V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S297. Gene #31: 'del_2p25.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 3(2P25.1) MUTATED | 33 | 72 | 29 | 53 | 11 |
DEL PEAK 3(2P25.1) WILD-TYPE | 366 | 168 | 70 | 211 | 31 |
Figure S297. Get High-res Image Gene #31: 'del_2p25.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D31V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S298. Gene #31: 'del_2p25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 3(2P25.1) MUTATED | 29 | 32 | 34 | 46 | 52 | 2 |
DEL PEAK 3(2P25.1) WILD-TYPE | 149 | 211 | 163 | 134 | 132 | 56 |
Figure S298. Get High-res Image Gene #31: 'del_2p25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D31V8.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.039
Table S299. Gene #31: 'del_2p25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 3(2P25.1) MUTATED | 40 | 104 | 47 |
DEL PEAK 3(2P25.1) WILD-TYPE | 266 | 318 | 250 |
Figure S299. Get High-res Image Gene #31: 'del_2p25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D31V9.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.02
Table S300. Gene #31: 'del_2p25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 3(2P25.1) MUTATED | 18 | 41 | 96 | 23 | 13 |
DEL PEAK 3(2P25.1) WILD-TYPE | 156 | 145 | 309 | 111 | 113 |
Figure S300. Get High-res Image Gene #31: 'del_2p25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D31V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S301. Gene #32: 'del_2q37.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 4(2Q37.3) MUTATED | 5 | 9 | 42 | 49 | 24 | 28 | 6 | 0 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 16 | 27 | 77 | 47 | 85 | 44 | 14 | 40 |
Figure S301. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D32V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S302. Gene #32: 'del_2q37.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 4(2Q37.3) MUTATED | 40 | 22 | 48 | 43 | 10 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 61 | 130 | 66 | 45 | 48 |
Figure S302. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D32V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S303. Gene #32: 'del_2q37.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 4(2Q37.3) MUTATED | 40 | 97 | 31 | 128 | 14 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 359 | 143 | 68 | 136 | 28 |
Figure S303. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D32V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S304. Gene #32: 'del_2q37.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 4(2Q37.3) MUTATED | 64 | 46 | 49 | 15 | 19 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 68 | 151 | 128 | 73 | 109 |
Figure S304. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D32V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S305. Gene #32: 'del_2q37.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 4(2Q37.3) MUTATED | 73 | 40 | 14 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 76 | 92 | 103 |
Figure S305. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D32V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S306. Gene #32: 'del_2q37.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 4(2Q37.3) MUTATED | 19 | 10 | 41 | 45 | 12 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 45 | 96 | 49 | 62 | 19 |
Figure S306. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D32V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S307. Gene #32: 'del_2q37.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 4(2Q37.3) MUTATED | 93 | 19 | 50 | 59 | 79 | 4 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 97 | 124 | 184 | 102 | 165 | 48 | 13 |
Figure S307. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D32V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S308. Gene #32: 'del_2q37.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 4(2Q37.3) MUTATED | 87 | 30 | 34 | 75 | 67 | 14 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 91 | 213 | 163 | 105 | 117 | 44 |
Figure S308. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D32V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S309. Gene #32: 'del_2q37.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 4(2Q37.3) MUTATED | 47 | 122 | 133 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 259 | 300 | 164 |
Figure S309. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D32V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S310. Gene #32: 'del_2q37.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 4(2Q37.3) MUTATED | 17 | 47 | 128 | 68 | 42 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 157 | 139 | 277 | 66 | 84 |
Figure S310. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D32V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S311. Gene #32: 'del_2q37.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 4(2Q37.3) MUTATED | 65 | 37 | 102 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 184 | 219 | 107 |
Figure S311. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D32V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S312. Gene #32: 'del_2q37.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 4(2Q37.3) MUTATED | 64 | 13 | 65 | 34 | 10 | 18 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 63 | 54 | 128 | 101 | 115 | 49 |
Figure S312. Get High-res Image Gene #32: 'del_2q37.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D32V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S313. Gene #33: 'del_3p21.31' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 5(3P21.31) MUTATED | 5 | 15 | 38 | 52 | 8 | 35 | 9 | 7 |
DEL PEAK 5(3P21.31) WILD-TYPE | 16 | 21 | 81 | 44 | 101 | 37 | 11 | 33 |
Figure S313. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D33V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S314. Gene #33: 'del_3p21.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 5(3P21.31) MUTATED | 29 | 36 | 55 | 48 | 1 |
DEL PEAK 5(3P21.31) WILD-TYPE | 72 | 116 | 59 | 40 | 57 |
Figure S314. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D33V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S315. Gene #33: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 5(3P21.31) MUTATED | 56 | 92 | 20 | 165 | 4 |
DEL PEAK 5(3P21.31) WILD-TYPE | 343 | 148 | 79 | 99 | 38 |
Figure S315. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
![](D33V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S316. Gene #33: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 5(3P21.31) MUTATED | 70 | 31 | 74 | 23 | 27 |
DEL PEAK 5(3P21.31) WILD-TYPE | 62 | 166 | 103 | 65 | 101 |
Figure S316. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D33V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S317. Gene #33: 'del_3p21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 5(3P21.31) MUTATED | 81 | 27 | 36 |
DEL PEAK 5(3P21.31) WILD-TYPE | 68 | 105 | 81 |
Figure S317. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D33V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S318. Gene #33: 'del_3p21.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 5(3P21.31) MUTATED | 5 | 32 | 55 | 41 | 11 |
DEL PEAK 5(3P21.31) WILD-TYPE | 59 | 74 | 35 | 66 | 20 |
Figure S318. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D33V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S319. Gene #33: 'del_3p21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 5(3P21.31) MUTATED | 103 | 30 | 27 | 76 | 81 | 12 | 7 |
DEL PEAK 5(3P21.31) WILD-TYPE | 87 | 113 | 207 | 85 | 163 | 40 | 9 |
Figure S319. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D33V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S320. Gene #33: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 5(3P21.31) MUTATED | 98 | 51 | 23 | 90 | 50 | 24 |
DEL PEAK 5(3P21.31) WILD-TYPE | 80 | 192 | 174 | 90 | 134 | 34 |
Figure S320. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D33V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S321. Gene #33: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 5(3P21.31) MUTATED | 58 | 117 | 155 |
DEL PEAK 5(3P21.31) WILD-TYPE | 248 | 305 | 142 |
Figure S321. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D33V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S322. Gene #33: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 5(3P21.31) MUTATED | 28 | 35 | 136 | 74 | 57 |
DEL PEAK 5(3P21.31) WILD-TYPE | 146 | 151 | 269 | 60 | 69 |
Figure S322. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D33V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S323. Gene #33: 'del_3p21.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 5(3P21.31) MUTATED | 63 | 55 | 110 |
DEL PEAK 5(3P21.31) WILD-TYPE | 186 | 201 | 99 |
Figure S323. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D33V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S324. Gene #33: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 5(3P21.31) MUTATED | 68 | 12 | 63 | 31 | 23 | 31 |
DEL PEAK 5(3P21.31) WILD-TYPE | 59 | 55 | 130 | 104 | 102 | 36 |
Figure S324. Get High-res Image Gene #33: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S325. Gene #34: 'del_4p16.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 6(4P16.3) MUTATED | 3 | 10 | 25 | 58 | 22 | 38 | 7 | 6 |
DEL PEAK 6(4P16.3) WILD-TYPE | 18 | 26 | 94 | 38 | 87 | 34 | 13 | 34 |
Figure S325. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D34V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S326. Gene #34: 'del_4p16.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 6(4P16.3) MUTATED | 27 | 28 | 51 | 52 | 11 |
DEL PEAK 6(4P16.3) WILD-TYPE | 74 | 124 | 63 | 36 | 47 |
Figure S326. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D34V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S327. Gene #34: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 6(4P16.3) MUTATED | 47 | 69 | 45 | 159 | 10 |
DEL PEAK 6(4P16.3) WILD-TYPE | 352 | 171 | 54 | 105 | 32 |
Figure S327. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D34V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S328. Gene #34: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 6(4P16.3) MUTATED | 84 | 40 | 50 | 15 | 29 |
DEL PEAK 6(4P16.3) WILD-TYPE | 48 | 157 | 127 | 73 | 99 |
Figure S328. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D34V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S329. Gene #34: 'del_4p16.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 6(4P16.3) MUTATED | 77 | 38 | 25 |
DEL PEAK 6(4P16.3) WILD-TYPE | 72 | 94 | 92 |
Figure S329. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D34V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S330. Gene #34: 'del_4p16.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 6(4P16.3) MUTATED | 18 | 25 | 54 | 32 | 11 |
DEL PEAK 6(4P16.3) WILD-TYPE | 46 | 81 | 36 | 75 | 20 |
Figure S330. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D34V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S331. Gene #34: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 6(4P16.3) MUTATED | 117 | 20 | 54 | 70 | 53 | 7 | 7 |
DEL PEAK 6(4P16.3) WILD-TYPE | 73 | 123 | 180 | 91 | 191 | 45 | 9 |
Figure S331. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D34V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S332. Gene #34: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 6(4P16.3) MUTATED | 110 | 38 | 37 | 74 | 39 | 30 |
DEL PEAK 6(4P16.3) WILD-TYPE | 68 | 205 | 160 | 106 | 145 | 28 |
Figure S332. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D34V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S333. Gene #34: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 6(4P16.3) MUTATED | 50 | 113 | 156 |
DEL PEAK 6(4P16.3) WILD-TYPE | 256 | 309 | 141 |
Figure S333. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D34V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S334. Gene #34: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 6(4P16.3) MUTATED | 23 | 35 | 124 | 84 | 53 |
DEL PEAK 6(4P16.3) WILD-TYPE | 151 | 151 | 281 | 50 | 73 |
Figure S334. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D34V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S335. Gene #34: 'del_4p16.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 6(4P16.3) MUTATED | 65 | 48 | 111 |
DEL PEAK 6(4P16.3) WILD-TYPE | 184 | 208 | 98 |
Figure S335. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D34V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S336. Gene #34: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 6(4P16.3) MUTATED | 76 | 13 | 62 | 23 | 20 | 30 |
DEL PEAK 6(4P16.3) WILD-TYPE | 51 | 54 | 131 | 112 | 105 | 37 |
Figure S336. Get High-res Image Gene #34: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S337. Gene #35: 'del_4q35.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 7(4Q35.2) MUTATED | 7 | 10 | 26 | 52 | 24 | 32 | 10 | 9 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 14 | 26 | 93 | 44 | 85 | 40 | 10 | 31 |
Figure S337. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D35V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S338. Gene #35: 'del_4q35.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 7(4Q35.2) MUTATED | 26 | 32 | 52 | 47 | 13 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 75 | 120 | 62 | 41 | 45 |
Figure S338. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D35V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S339. Gene #35: 'del_4q35.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 7(4Q35.2) MUTATED | 50 | 60 | 50 | 167 | 10 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 349 | 180 | 49 | 97 | 32 |
Figure S339. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D35V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S340. Gene #35: 'del_4q35.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 7(4Q35.2) MUTATED | 85 | 37 | 43 | 20 | 37 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 47 | 160 | 134 | 68 | 91 |
Figure S340. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D35V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S341. Gene #35: 'del_4q35.2' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 7(4Q35.2) MUTATED | 79 | 35 | 26 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 70 | 97 | 91 |
Figure S341. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D35V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S342. Gene #35: 'del_4q35.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 7(4Q35.2) MUTATED | 15 | 25 | 52 | 37 | 11 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 49 | 81 | 38 | 70 | 20 |
Figure S342. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D35V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S343. Gene #35: 'del_4q35.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 7(4Q35.2) MUTATED | 119 | 20 | 60 | 68 | 53 | 7 | 8 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 71 | 123 | 174 | 93 | 191 | 45 | 8 |
Figure S343. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D35V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S344. Gene #35: 'del_4q35.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 7(4Q35.2) MUTATED | 113 | 42 | 42 | 81 | 34 | 23 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 65 | 201 | 155 | 99 | 150 | 35 |
Figure S344. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S345. Gene #35: 'del_4q35.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 7(4Q35.2) MUTATED | 55 | 111 | 158 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 251 | 311 | 139 |
Figure S345. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D35V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S346. Gene #35: 'del_4q35.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 7(4Q35.2) MUTATED | 23 | 36 | 121 | 88 | 56 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 151 | 150 | 284 | 46 | 70 |
Figure S346. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D35V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S347. Gene #35: 'del_4q35.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 7(4Q35.2) MUTATED | 63 | 49 | 113 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 186 | 207 | 96 |
Figure S347. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D35V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S348. Gene #35: 'del_4q35.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 7(4Q35.2) MUTATED | 79 | 14 | 68 | 20 | 19 | 25 |
DEL PEAK 7(4Q35.2) WILD-TYPE | 48 | 53 | 125 | 115 | 106 | 42 |
Figure S348. Get High-res Image Gene #35: 'del_4q35.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S349. Gene #36: 'del_5q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 8(5Q11.2) MUTATED | 3 | 5 | 19 | 69 | 7 | 26 | 3 | 4 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 18 | 31 | 100 | 27 | 102 | 46 | 17 | 36 |
Figure S349. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D36V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S350. Gene #36: 'del_5q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 8(5Q11.2) MUTATED | 18 | 15 | 38 | 63 | 2 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 83 | 137 | 76 | 25 | 56 |
Figure S350. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D36V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S351. Gene #36: 'del_5q11.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 8(5Q11.2) MUTATED | 29 | 38 | 8 | 187 | 10 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 370 | 202 | 91 | 77 | 32 |
Figure S351. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D36V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S352. Gene #36: 'del_5q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 8(5Q11.2) MUTATED | 99 | 16 | 30 | 9 | 32 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 33 | 181 | 147 | 79 | 96 |
Figure S352. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D36V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S353. Gene #36: 'del_5q11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 8(5Q11.2) MUTATED | 80 | 12 | 23 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 69 | 120 | 94 |
Figure S353. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D36V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S354. Gene #36: 'del_5q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 8(5Q11.2) MUTATED | 4 | 14 | 64 | 23 | 10 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 60 | 92 | 26 | 84 | 21 |
Figure S354. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D36V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S355. Gene #36: 'del_5q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 8(5Q11.2) MUTATED | 137 | 8 | 18 | 55 | 44 | 4 | 5 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 53 | 135 | 216 | 106 | 200 | 48 | 11 |
Figure S355. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D36V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S356. Gene #36: 'del_5q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 8(5Q11.2) MUTATED | 134 | 19 | 10 | 54 | 29 | 25 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 44 | 224 | 187 | 126 | 155 | 33 |
Figure S356. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S357. Gene #36: 'del_5q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 8(5Q11.2) MUTATED | 23 | 59 | 178 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 283 | 363 | 119 |
Figure S357. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D36V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S358. Gene #36: 'del_5q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 8(5Q11.2) MUTATED | 7 | 19 | 71 | 105 | 58 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 167 | 167 | 334 | 29 | 68 |
Figure S358. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D36V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S359. Gene #36: 'del_5q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 8(5Q11.2) MUTATED | 37 | 18 | 131 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 212 | 238 | 78 |
Figure S359. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D36V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S360. Gene #36: 'del_5q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 8(5Q11.2) MUTATED | 93 | 6 | 33 | 21 | 4 | 29 |
DEL PEAK 8(5Q11.2) WILD-TYPE | 34 | 61 | 160 | 114 | 121 | 38 |
Figure S360. Get High-res Image Gene #36: 'del_5q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S361. Gene #37: 'del_5q21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 9(5Q21.3) MUTATED | 2 | 5 | 19 | 71 | 7 | 24 | 5 | 2 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 19 | 31 | 100 | 25 | 102 | 48 | 15 | 38 |
Figure S361. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D37V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S362. Gene #37: 'del_5q21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 9(5Q21.3) MUTATED | 18 | 13 | 36 | 66 | 2 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 83 | 139 | 78 | 22 | 56 |
Figure S362. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D37V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S363. Gene #37: 'del_5q21.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 9(5Q21.3) MUTATED | 23 | 32 | 7 | 194 | 8 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 376 | 208 | 92 | 70 | 34 |
Figure S363. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D37V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S364. Gene #37: 'del_5q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 9(5Q21.3) MUTATED | 106 | 10 | 28 | 6 | 30 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 26 | 187 | 149 | 82 | 98 |
Figure S364. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D37V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S365. Gene #37: 'del_5q21.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 9(5Q21.3) MUTATED | 78 | 12 | 23 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 71 | 120 | 94 |
Figure S365. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D37V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S366. Gene #37: 'del_5q21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 9(5Q21.3) MUTATED | 5 | 16 | 62 | 21 | 9 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 59 | 90 | 28 | 86 | 22 |
Figure S366. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D37V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S367. Gene #37: 'del_5q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 9(5Q21.3) MUTATED | 144 | 8 | 12 | 50 | 39 | 4 | 6 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 46 | 135 | 222 | 111 | 205 | 48 | 10 |
Figure S367. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D37V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S368. Gene #37: 'del_5q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 9(5Q21.3) MUTATED | 139 | 17 | 7 | 49 | 28 | 23 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 39 | 226 | 190 | 131 | 156 | 35 |
Figure S368. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D37V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S369. Gene #37: 'del_5q21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 9(5Q21.3) MUTATED | 18 | 55 | 181 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 288 | 367 | 116 |
Figure S369. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D37V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S370. Gene #37: 'del_5q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 9(5Q21.3) MUTATED | 5 | 14 | 68 | 109 | 58 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 169 | 172 | 337 | 25 | 68 |
Figure S370. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D37V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S371. Gene #37: 'del_5q21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 9(5Q21.3) MUTATED | 28 | 18 | 129 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 221 | 238 | 80 |
Figure S371. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D37V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S372. Gene #37: 'del_5q21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 9(5Q21.3) MUTATED | 97 | 6 | 28 | 14 | 3 | 27 |
DEL PEAK 9(5Q21.3) WILD-TYPE | 30 | 61 | 165 | 121 | 122 | 40 |
Figure S372. Get High-res Image Gene #37: 'del_5q21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S373. Gene #38: 'del_6p25.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 10(6P25.3) MUTATED | 41 | 73 | 19 | 61 | 8 |
DEL PEAK 10(6P25.3) WILD-TYPE | 358 | 167 | 80 | 203 | 34 |
Figure S373. Get High-res Image Gene #38: 'del_6p25.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D38V3.png)
P value = 0.00144 (Fisher's exact test), Q value = 0.23
Table S374. Gene #38: 'del_6p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 10(6P25.3) MUTATED | 45 | 15 | 41 | 29 | 64 | 6 | 1 |
DEL PEAK 10(6P25.3) WILD-TYPE | 145 | 128 | 193 | 132 | 180 | 46 | 15 |
Figure S374. Get High-res Image Gene #38: 'del_6p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D38V7.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.074
Table S375. Gene #38: 'del_6p25.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 10(6P25.3) MUTATED | 31 | 5 | 55 | 22 | 16 | 14 |
DEL PEAK 10(6P25.3) WILD-TYPE | 96 | 62 | 138 | 113 | 109 | 53 |
Figure S375. Get High-res Image Gene #38: 'del_6p25.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S376. Gene #39: 'del_6q15' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 11(6Q15) MUTATED | 6 | 13 | 63 | 20 | 24 | 29 | 4 | 16 |
DEL PEAK 11(6Q15) WILD-TYPE | 15 | 23 | 56 | 76 | 85 | 43 | 16 | 24 |
Figure S376. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D39V1.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.069
Table S377. Gene #39: 'del_6q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 11(6Q15) MUTATED | 50 | 51 | 42 | 18 | 14 |
DEL PEAK 11(6Q15) WILD-TYPE | 51 | 101 | 72 | 70 | 44 |
Figure S377. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D39V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S378. Gene #39: 'del_6q15' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 11(6Q15) MUTATED | 85 | 152 | 30 | 51 | 23 |
DEL PEAK 11(6Q15) WILD-TYPE | 314 | 88 | 69 | 213 | 19 |
Figure S378. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #3: 'CN_CNMF'
![](D39V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S379. Gene #39: 'del_6q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 11(6Q15) MUTATED | 26 | 81 | 73 | 21 | 25 |
DEL PEAK 11(6Q15) WILD-TYPE | 106 | 116 | 104 | 67 | 103 |
Figure S379. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D39V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S380. Gene #39: 'del_6q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 11(6Q15) MUTATED | 31 | 42 | 72 | 56 | 123 | 12 | 4 |
DEL PEAK 11(6Q15) WILD-TYPE | 159 | 101 | 162 | 105 | 121 | 40 | 12 |
Figure S380. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D39V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S381. Gene #39: 'del_6q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 11(6Q15) MUTATED | 28 | 79 | 50 | 65 | 98 | 20 |
DEL PEAK 11(6Q15) WILD-TYPE | 150 | 164 | 147 | 115 | 86 | 38 |
Figure S381. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S382. Gene #39: 'del_6q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 11(6Q15) MUTATED | 47 | 81 | 150 | 21 | 39 |
DEL PEAK 11(6Q15) WILD-TYPE | 127 | 105 | 255 | 113 | 87 |
Figure S382. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D39V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S383. Gene #39: 'del_6q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 11(6Q15) MUTATED | 21 | 19 | 82 | 56 | 33 | 20 |
DEL PEAK 11(6Q15) WILD-TYPE | 106 | 48 | 111 | 79 | 92 | 47 |
Figure S383. Get High-res Image Gene #39: 'del_6q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S384. Gene #40: 'del_6q27' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 12(6Q27) MUTATED | 94 | 127 | 28 | 88 | 25 |
DEL PEAK 12(6Q27) WILD-TYPE | 305 | 113 | 71 | 176 | 17 |
Figure S384. Get High-res Image Gene #40: 'del_6q27' versus Molecular Subtype #3: 'CN_CNMF'
![](D40V3.png)
P value = 0.00154 (Fisher's exact test), Q value = 0.24
Table S385. Gene #40: 'del_6q27' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 12(6Q27) MUTATED | 66 | 44 | 65 | 59 | 110 | 12 | 4 |
DEL PEAK 12(6Q27) WILD-TYPE | 124 | 99 | 169 | 102 | 134 | 40 | 12 |
Figure S385. Get High-res Image Gene #40: 'del_6q27' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D40V7.png)
P value = 0.00028 (Fisher's exact test), Q value = 0.055
Table S386. Gene #40: 'del_6q27' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 12(6Q27) MUTATED | 61 | 82 | 46 | 62 | 82 | 27 |
DEL PEAK 12(6Q27) WILD-TYPE | 117 | 161 | 151 | 118 | 102 | 31 |
Figure S386. Get High-res Image Gene #40: 'del_6q27' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S387. Gene #41: 'del_7p22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 13(7P22.3) MUTATED | 4 | 3 | 24 | 25 | 2 | 12 | 2 | 4 |
DEL PEAK 13(7P22.3) WILD-TYPE | 17 | 33 | 95 | 71 | 107 | 60 | 18 | 36 |
Figure S387. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D41V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S388. Gene #41: 'del_7p22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 13(7P22.3) MUTATED | 20 | 8 | 22 | 24 | 2 |
DEL PEAK 13(7P22.3) WILD-TYPE | 81 | 144 | 92 | 64 | 56 |
Figure S388. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D41V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S389. Gene #41: 'del_7p22.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 13(7P22.3) MUTATED | 12 | 51 | 4 | 65 | 2 |
DEL PEAK 13(7P22.3) WILD-TYPE | 387 | 189 | 95 | 199 | 40 |
Figure S389. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D41V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S390. Gene #41: 'del_7p22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 13(7P22.3) MUTATED | 30 | 12 | 25 | 6 | 5 |
DEL PEAK 13(7P22.3) WILD-TYPE | 102 | 185 | 152 | 82 | 123 |
Figure S390. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D41V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S391. Gene #41: 'del_7p22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 13(7P22.3) MUTATED | 49 | 6 | 11 | 27 | 37 | 1 | 1 |
DEL PEAK 13(7P22.3) WILD-TYPE | 141 | 137 | 223 | 134 | 207 | 51 | 15 |
Figure S391. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D41V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S392. Gene #41: 'del_7p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 13(7P22.3) MUTATED | 47 | 9 | 12 | 31 | 28 | 5 |
DEL PEAK 13(7P22.3) WILD-TYPE | 131 | 234 | 185 | 149 | 156 | 53 |
Figure S392. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D41V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S393. Gene #41: 'del_7p22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 13(7P22.3) MUTATED | 8 | 55 | 67 |
DEL PEAK 13(7P22.3) WILD-TYPE | 298 | 367 | 230 |
Figure S393. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D41V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S394. Gene #41: 'del_7p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 13(7P22.3) MUTATED | 3 | 9 | 58 | 38 | 22 |
DEL PEAK 13(7P22.3) WILD-TYPE | 171 | 177 | 347 | 96 | 104 |
Figure S394. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D41V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S395. Gene #41: 'del_7p22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 13(7P22.3) MUTATED | 22 | 12 | 43 |
DEL PEAK 13(7P22.3) WILD-TYPE | 227 | 244 | 166 |
Figure S395. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D41V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S396. Gene #41: 'del_7p22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 13(7P22.3) MUTATED | 32 | 1 | 24 | 13 | 2 | 5 |
DEL PEAK 13(7P22.3) WILD-TYPE | 95 | 66 | 169 | 122 | 123 | 62 |
Figure S396. Get High-res Image Gene #41: 'del_7p22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D41V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S397. Gene #42: 'del_7q36.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 14(7Q36.1) MUTATED | 16 | 17 | 45 | 17 | 7 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 85 | 135 | 69 | 71 | 51 |
Figure S397. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D42V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S398. Gene #42: 'del_7q36.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 14(7Q36.1) MUTATED | 37 | 65 | 13 | 74 | 6 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 362 | 175 | 86 | 190 | 36 |
Figure S398. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D42V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S399. Gene #42: 'del_7q36.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 14(7Q36.1) MUTATED | 44 | 15 | 31 | 52 | 45 | 4 | 2 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 146 | 128 | 203 | 109 | 199 | 48 | 14 |
Figure S399. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D42V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S400. Gene #42: 'del_7q36.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 14(7Q36.1) MUTATED | 38 | 28 | 23 | 48 | 38 | 18 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 140 | 215 | 174 | 132 | 146 | 40 |
Figure S400. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S401. Gene #42: 'del_7q36.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 14(7Q36.1) MUTATED | 25 | 82 | 83 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 281 | 340 | 214 |
Figure S401. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D42V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S402. Gene #42: 'del_7q36.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 14(7Q36.1) MUTATED | 11 | 24 | 88 | 29 | 38 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 163 | 162 | 317 | 105 | 88 |
Figure S402. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D42V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S403. Gene #42: 'del_7q36.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 14(7Q36.1) MUTATED | 46 | 22 | 60 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 203 | 234 | 149 |
Figure S403. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D42V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S404. Gene #42: 'del_7q36.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 14(7Q36.1) MUTATED | 33 | 7 | 43 | 20 | 5 | 20 |
DEL PEAK 14(7Q36.1) WILD-TYPE | 94 | 60 | 150 | 115 | 120 | 47 |
Figure S404. Get High-res Image Gene #42: 'del_7q36.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D42V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S405. Gene #43: 'del_8p23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 15(8P23.2) MUTATED | 12 | 15 | 78 | 64 | 29 | 47 | 13 | 18 |
DEL PEAK 15(8P23.2) WILD-TYPE | 9 | 21 | 41 | 32 | 80 | 25 | 7 | 22 |
Figure S405. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D43V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S406. Gene #43: 'del_8p23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 15(8P23.2) MUTATED | 67 | 59 | 78 | 57 | 15 |
DEL PEAK 15(8P23.2) WILD-TYPE | 34 | 93 | 36 | 31 | 43 |
Figure S406. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D43V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S407. Gene #43: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 15(8P23.2) MUTATED | 128 | 169 | 26 | 185 | 34 |
DEL PEAK 15(8P23.2) WILD-TYPE | 271 | 71 | 73 | 79 | 8 |
Figure S407. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D43V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S408. Gene #43: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 15(8P23.2) MUTATED | 87 | 81 | 102 | 26 | 63 |
DEL PEAK 15(8P23.2) WILD-TYPE | 45 | 116 | 75 | 62 | 65 |
Figure S408. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D43V4.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.13
Table S409. Gene #43: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 15(8P23.2) MUTATED | 22 | 57 | 58 | 66 | 22 |
DEL PEAK 15(8P23.2) WILD-TYPE | 42 | 49 | 32 | 41 | 9 |
Figure S409. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D43V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S410. Gene #43: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 15(8P23.2) MUTATED | 119 | 53 | 73 | 109 | 151 | 22 | 12 |
DEL PEAK 15(8P23.2) WILD-TYPE | 71 | 90 | 161 | 52 | 93 | 30 | 4 |
Figure S410. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D43V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S411. Gene #43: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 15(8P23.2) MUTATED | 112 | 95 | 51 | 119 | 115 | 47 |
DEL PEAK 15(8P23.2) WILD-TYPE | 66 | 148 | 146 | 61 | 69 | 11 |
Figure S411. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D43V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S412. Gene #43: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 15(8P23.2) MUTATED | 116 | 220 | 194 |
DEL PEAK 15(8P23.2) WILD-TYPE | 190 | 202 | 103 |
Figure S412. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D43V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S413. Gene #43: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 15(8P23.2) MUTATED | 55 | 85 | 215 | 86 | 89 |
DEL PEAK 15(8P23.2) WILD-TYPE | 119 | 101 | 190 | 48 | 37 |
Figure S413. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D43V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S414. Gene #43: 'del_8p23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 15(8P23.2) MUTATED | 123 | 101 | 138 |
DEL PEAK 15(8P23.2) WILD-TYPE | 126 | 155 | 71 |
Figure S414. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D43V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S415. Gene #43: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 15(8P23.2) MUTATED | 81 | 21 | 95 | 73 | 42 | 50 |
DEL PEAK 15(8P23.2) WILD-TYPE | 46 | 46 | 98 | 62 | 83 | 17 |
Figure S415. Get High-res Image Gene #43: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D43V12.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.021
Table S416. Gene #44: 'del_8p11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 16(8P11.21) MUTATED | 4 | 4 | 23 | 23 | 9 | 27 | 7 | 7 |
DEL PEAK 16(8P11.21) WILD-TYPE | 17 | 32 | 96 | 73 | 100 | 45 | 13 | 33 |
Figure S416. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D44V1.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.052
Table S417. Gene #44: 'del_8p11.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 16(8P11.21) MUTATED | 21 | 20 | 37 | 21 | 5 |
DEL PEAK 16(8P11.21) WILD-TYPE | 80 | 132 | 77 | 67 | 53 |
Figure S417. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D44V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S418. Gene #44: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 16(8P11.21) MUTATED | 45 | 56 | 13 | 84 | 1 |
DEL PEAK 16(8P11.21) WILD-TYPE | 354 | 184 | 86 | 180 | 41 |
Figure S418. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
![](D44V3.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.035
Table S419. Gene #44: 'del_8p11.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 16(8P11.21) MUTATED | 5 | 21 | 21 | 24 | 16 |
DEL PEAK 16(8P11.21) WILD-TYPE | 59 | 85 | 69 | 83 | 15 |
Figure S419. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D44V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S420. Gene #44: 'del_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 16(8P11.21) MUTATED | 38 | 21 | 25 | 65 | 36 | 9 | 5 |
DEL PEAK 16(8P11.21) WILD-TYPE | 152 | 122 | 209 | 96 | 208 | 43 | 11 |
Figure S420. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D44V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S421. Gene #44: 'del_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 16(8P11.21) MUTATED | 35 | 30 | 20 | 59 | 30 | 25 |
DEL PEAK 16(8P11.21) WILD-TYPE | 143 | 213 | 177 | 121 | 154 | 33 |
Figure S421. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D44V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.0083
Table S422. Gene #44: 'del_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 16(8P11.21) MUTATED | 34 | 86 | 77 |
DEL PEAK 16(8P11.21) WILD-TYPE | 272 | 336 | 220 |
Figure S422. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D44V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S423. Gene #44: 'del_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 16(8P11.21) MUTATED | 16 | 20 | 87 | 24 | 50 |
DEL PEAK 16(8P11.21) WILD-TYPE | 158 | 166 | 318 | 110 | 76 |
Figure S423. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D44V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S424. Gene #44: 'del_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 16(8P11.21) MUTATED | 58 | 27 | 56 |
DEL PEAK 16(8P11.21) WILD-TYPE | 191 | 229 | 153 |
Figure S424. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D44V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S425. Gene #44: 'del_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 16(8P11.21) MUTATED | 28 | 7 | 52 | 10 | 17 | 27 |
DEL PEAK 16(8P11.21) WILD-TYPE | 99 | 60 | 141 | 125 | 108 | 40 |
Figure S425. Get High-res Image Gene #44: 'del_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D44V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S426. Gene #45: 'del_9p23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 17(9P23) MUTATED | 9 | 15 | 57 | 21 | 22 | 34 | 10 | 5 |
DEL PEAK 17(9P23) WILD-TYPE | 12 | 21 | 62 | 75 | 87 | 38 | 10 | 35 |
Figure S426. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D45V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S427. Gene #45: 'del_9p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 17(9P23) MUTATED | 49 | 36 | 61 | 17 | 10 |
DEL PEAK 17(9P23) WILD-TYPE | 52 | 116 | 53 | 71 | 48 |
Figure S427. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D45V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S428. Gene #45: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 17(9P23) MUTATED | 43 | 153 | 18 | 97 | 8 |
DEL PEAK 17(9P23) WILD-TYPE | 356 | 87 | 81 | 167 | 34 |
Figure S428. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
![](D45V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S429. Gene #45: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 17(9P23) MUTATED | 37 | 43 | 90 | 14 | 25 |
DEL PEAK 17(9P23) WILD-TYPE | 95 | 154 | 87 | 74 | 103 |
Figure S429. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D45V4.png)
P value = 0.00082 (Fisher's exact test), Q value = 0.14
Table S430. Gene #45: 'del_9p23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 17(9P23) MUTATED | 15 | 31 | 26 | 53 | 15 |
DEL PEAK 17(9P23) WILD-TYPE | 49 | 75 | 64 | 54 | 16 |
Figure S430. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D45V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S431. Gene #45: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 17(9P23) MUTATED | 41 | 26 | 43 | 74 | 118 | 9 | 8 |
DEL PEAK 17(9P23) WILD-TYPE | 149 | 117 | 191 | 87 | 126 | 43 | 8 |
Figure S431. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D45V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S432. Gene #45: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 17(9P23) MUTATED | 34 | 41 | 29 | 92 | 94 | 29 |
DEL PEAK 17(9P23) WILD-TYPE | 144 | 202 | 168 | 88 | 90 | 29 |
Figure S432. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D45V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S433. Gene #45: 'del_9p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 17(9P23) MUTATED | 56 | 156 | 100 |
DEL PEAK 17(9P23) WILD-TYPE | 250 | 266 | 197 |
Figure S433. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D45V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S434. Gene #45: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 17(9P23) MUTATED | 17 | 50 | 161 | 21 | 63 |
DEL PEAK 17(9P23) WILD-TYPE | 157 | 136 | 244 | 113 | 63 |
Figure S434. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D45V10.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.025
Table S435. Gene #45: 'del_9p23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 17(9P23) MUTATED | 83 | 50 | 72 |
DEL PEAK 17(9P23) WILD-TYPE | 166 | 206 | 137 |
Figure S435. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D45V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S436. Gene #45: 'del_9p23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 17(9P23) MUTATED | 28 | 8 | 75 | 42 | 14 | 38 |
DEL PEAK 17(9P23) WILD-TYPE | 99 | 59 | 118 | 93 | 111 | 29 |
Figure S436. Get High-res Image Gene #45: 'del_9p23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S437. Gene #46: 'del_9p21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 18(9P21.3) MUTATED | 9 | 12 | 62 | 33 | 24 | 38 | 8 | 6 |
DEL PEAK 18(9P21.3) WILD-TYPE | 12 | 24 | 57 | 63 | 85 | 34 | 12 | 34 |
Figure S437. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D46V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S438. Gene #46: 'del_9p21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 18(9P21.3) MUTATED | 53 | 34 | 65 | 28 | 12 |
DEL PEAK 18(9P21.3) WILD-TYPE | 48 | 118 | 49 | 60 | 46 |
Figure S438. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D46V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S439. Gene #46: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 18(9P21.3) MUTATED | 50 | 158 | 20 | 120 | 9 |
DEL PEAK 18(9P21.3) WILD-TYPE | 349 | 82 | 79 | 144 | 33 |
Figure S439. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D46V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S440. Gene #46: 'del_9p21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 18(9P21.3) MUTATED | 51 | 49 | 86 | 14 | 28 |
DEL PEAK 18(9P21.3) WILD-TYPE | 81 | 148 | 91 | 74 | 100 |
Figure S440. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D46V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S441. Gene #46: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 18(9P21.3) MUTATED | 66 | 25 | 47 | 78 | 123 | 9 | 7 |
DEL PEAK 18(9P21.3) WILD-TYPE | 124 | 118 | 187 | 83 | 121 | 43 | 9 |
Figure S441. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D46V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S442. Gene #46: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 18(9P21.3) MUTATED | 60 | 39 | 34 | 94 | 97 | 31 |
DEL PEAK 18(9P21.3) WILD-TYPE | 118 | 204 | 163 | 86 | 87 | 27 |
Figure S442. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D46V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S443. Gene #46: 'del_9p21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 18(9P21.3) MUTATED | 55 | 169 | 123 |
DEL PEAK 18(9P21.3) WILD-TYPE | 251 | 253 | 174 |
Figure S443. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D46V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S444. Gene #46: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 18(9P21.3) MUTATED | 19 | 52 | 167 | 42 | 67 |
DEL PEAK 18(9P21.3) WILD-TYPE | 155 | 134 | 238 | 92 | 59 |
Figure S444. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D46V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S445. Gene #46: 'del_9p21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 18(9P21.3) MUTATED | 87 | 52 | 88 |
DEL PEAK 18(9P21.3) WILD-TYPE | 162 | 204 | 121 |
Figure S445. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D46V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S446. Gene #46: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 18(9P21.3) MUTATED | 44 | 9 | 76 | 47 | 12 | 39 |
DEL PEAK 18(9P21.3) WILD-TYPE | 83 | 58 | 117 | 88 | 113 | 28 |
Figure S446. Get High-res Image Gene #46: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D46V12.png)
P value = 0.00115 (Fisher's exact test), Q value = 0.19
Table S447. Gene #47: 'del_9q21.11' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 19(9Q21.11) MUTATED | 5 | 6 | 42 | 41 | 24 | 27 | 7 | 5 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 16 | 30 | 77 | 55 | 85 | 45 | 13 | 35 |
Figure S447. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D47V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S448. Gene #47: 'del_9q21.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 19(9Q21.11) MUTATED | 37 | 25 | 50 | 35 | 10 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 64 | 127 | 64 | 53 | 48 |
Figure S448. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D47V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S449. Gene #47: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 19(9Q21.11) MUTATED | 36 | 110 | 21 | 110 | 12 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 363 | 130 | 78 | 154 | 30 |
Figure S449. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
![](D47V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S450. Gene #47: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 19(9Q21.11) MUTATED | 55 | 40 | 54 | 12 | 26 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 77 | 157 | 123 | 76 | 102 |
Figure S450. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D47V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S451. Gene #47: 'del_9q21.11' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 19(9Q21.11) MUTATED | 69 | 33 | 22 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 80 | 99 | 95 |
Figure S451. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D47V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S452. Gene #47: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 19(9Q21.11) MUTATED | 74 | 15 | 46 | 50 | 90 | 7 | 7 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 116 | 128 | 188 | 111 | 154 | 45 | 9 |
Figure S452. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D47V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S453. Gene #47: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 19(9Q21.11) MUTATED | 68 | 31 | 26 | 69 | 73 | 22 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 110 | 212 | 171 | 111 | 111 | 36 |
Figure S453. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D47V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S454. Gene #47: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 19(9Q21.11) MUTATED | 42 | 117 | 123 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 264 | 305 | 174 |
Figure S454. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D47V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S455. Gene #47: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 19(9Q21.11) MUTATED | 13 | 36 | 121 | 54 | 58 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 161 | 150 | 284 | 80 | 68 |
Figure S455. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D47V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S456. Gene #47: 'del_9q21.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 19(9Q21.11) MUTATED | 59 | 43 | 85 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 190 | 213 | 124 |
Figure S456. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D47V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S457. Gene #47: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 19(9Q21.11) MUTATED | 50 | 5 | 53 | 36 | 10 | 33 |
DEL PEAK 19(9Q21.11) WILD-TYPE | 77 | 62 | 140 | 99 | 115 | 34 |
Figure S457. Get High-res Image Gene #47: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D47V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S458. Gene #48: 'del_9q34.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 20(9Q34.2) MUTATED | 6 | 4 | 40 | 55 | 23 | 18 | 7 | 4 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 15 | 32 | 79 | 41 | 86 | 54 | 13 | 36 |
Figure S458. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D48V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S459. Gene #48: 'del_9q34.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 20(9Q34.2) MUTATED | 36 | 23 | 38 | 50 | 10 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 65 | 129 | 76 | 38 | 48 |
Figure S459. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D48V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S460. Gene #48: 'del_9q34.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 20(9Q34.2) MUTATED | 25 | 98 | 17 | 141 | 12 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 374 | 142 | 82 | 123 | 30 |
Figure S460. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D48V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S461. Gene #48: 'del_9q34.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 20(9Q34.2) MUTATED | 74 | 37 | 47 | 10 | 21 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 58 | 160 | 130 | 78 | 107 |
Figure S461. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D48V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S462. Gene #48: 'del_9q34.2' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 20(9Q34.2) MUTATED | 68 | 33 | 21 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 81 | 99 | 96 |
Figure S462. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D48V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S463. Gene #48: 'del_9q34.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 20(9Q34.2) MUTATED | 12 | 20 | 50 | 37 | 3 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 52 | 86 | 40 | 70 | 28 |
Figure S463. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D48V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S464. Gene #48: 'del_9q34.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 20(9Q34.2) MUTATED | 107 | 10 | 45 | 37 | 82 | 4 | 7 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 83 | 133 | 189 | 124 | 162 | 48 | 9 |
Figure S464. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D48V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S465. Gene #48: 'del_9q34.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 20(9Q34.2) MUTATED | 101 | 23 | 27 | 58 | 68 | 15 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 77 | 220 | 170 | 122 | 116 | 43 |
Figure S465. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D48V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S466. Gene #48: 'del_9q34.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 20(9Q34.2) MUTATED | 34 | 108 | 142 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 272 | 314 | 155 |
Figure S466. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D48V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S467. Gene #48: 'del_9q34.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 20(9Q34.2) MUTATED | 13 | 35 | 106 | 79 | 51 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 161 | 151 | 299 | 55 | 75 |
Figure S467. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D48V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S468. Gene #48: 'del_9q34.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 20(9Q34.2) MUTATED | 51 | 36 | 104 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 198 | 220 | 105 |
Figure S468. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D48V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S469. Gene #48: 'del_9q34.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 20(9Q34.2) MUTATED | 72 | 5 | 49 | 29 | 10 | 26 |
DEL PEAK 20(9Q34.2) WILD-TYPE | 55 | 62 | 144 | 106 | 115 | 41 |
Figure S469. Get High-res Image Gene #48: 'del_9q34.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S470. Gene #49: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 21(10Q23.31) MUTATED | 7 | 6 | 36 | 49 | 20 | 21 | 7 | 3 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 14 | 30 | 83 | 47 | 89 | 51 | 13 | 37 |
Figure S470. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D49V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S471. Gene #49: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 21(10Q23.31) MUTATED | 28 | 29 | 39 | 45 | 8 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 73 | 123 | 75 | 43 | 50 |
Figure S471. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D49V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S472. Gene #49: 'del_10q23.31' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 21(10Q23.31) MUTATED | 50 | 82 | 27 | 138 | 16 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 349 | 158 | 72 | 126 | 26 |
Figure S472. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #3: 'CN_CNMF'
![](D49V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S473. Gene #49: 'del_10q23.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 21(10Q23.31) MUTATED | 76 | 40 | 65 | 17 | 26 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 56 | 157 | 112 | 71 | 102 |
Figure S473. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D49V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S474. Gene #49: 'del_10q23.31' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 21(10Q23.31) MUTATED | 68 | 30 | 20 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 81 | 102 | 97 |
Figure S474. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D49V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S475. Gene #49: 'del_10q23.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 21(10Q23.31) MUTATED | 12 | 17 | 45 | 34 | 10 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 52 | 89 | 45 | 73 | 21 |
Figure S475. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D49V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S476. Gene #49: 'del_10q23.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 21(10Q23.31) MUTATED | 99 | 23 | 41 | 62 | 80 | 4 | 2 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 91 | 120 | 193 | 99 | 164 | 48 | 14 |
Figure S476. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D49V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S477. Gene #49: 'del_10q23.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 21(10Q23.31) MUTATED | 94 | 37 | 30 | 71 | 57 | 22 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 84 | 206 | 167 | 109 | 127 | 36 |
Figure S477. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S478. Gene #49: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 21(10Q23.31) MUTATED | 64 | 104 | 136 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 242 | 318 | 161 |
Figure S478. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D49V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S479. Gene #49: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 21(10Q23.31) MUTATED | 22 | 40 | 113 | 72 | 57 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 152 | 146 | 292 | 62 | 69 |
Figure S479. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D49V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S480. Gene #49: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 21(10Q23.31) MUTATED | 59 | 53 | 100 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 190 | 203 | 109 |
Figure S480. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D49V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S481. Gene #49: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 21(10Q23.31) MUTATED | 71 | 10 | 49 | 38 | 20 | 24 |
DEL PEAK 21(10Q23.31) WILD-TYPE | 56 | 57 | 144 | 97 | 105 | 43 |
Figure S481. Get High-res Image Gene #49: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D49V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S482. Gene #50: 'del_10q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 22(10Q26.3) MUTATED | 8 | 7 | 38 | 55 | 14 | 22 | 6 | 4 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 13 | 29 | 81 | 41 | 95 | 50 | 14 | 36 |
Figure S482. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D50V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S483. Gene #50: 'del_10q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 22(10Q26.3) MUTATED | 31 | 23 | 44 | 49 | 7 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 70 | 129 | 70 | 39 | 51 |
Figure S483. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D50V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S484. Gene #50: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 22(10Q26.3) MUTATED | 47 | 88 | 23 | 142 | 11 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 352 | 152 | 76 | 122 | 31 |
Figure S484. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D50V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S485. Gene #50: 'del_10q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 22(10Q26.3) MUTATED | 75 | 37 | 68 | 12 | 24 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 57 | 160 | 109 | 76 | 104 |
Figure S485. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D50V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S486. Gene #50: 'del_10q26.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 22(10Q26.3) MUTATED | 73 | 28 | 24 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 76 | 104 | 93 |
Figure S486. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D50V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S487. Gene #50: 'del_10q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 22(10Q26.3) MUTATED | 11 | 16 | 48 | 36 | 14 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 53 | 90 | 42 | 71 | 17 |
Figure S487. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D50V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S488. Gene #50: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 22(10Q26.3) MUTATED | 105 | 17 | 34 | 66 | 79 | 7 | 2 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 85 | 126 | 200 | 95 | 165 | 45 | 14 |
Figure S488. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D50V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S489. Gene #50: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 22(10Q26.3) MUTATED | 96 | 33 | 27 | 76 | 53 | 25 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 82 | 210 | 170 | 104 | 131 | 33 |
Figure S489. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D50V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S490. Gene #50: 'del_10q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 22(10Q26.3) MUTATED | 55 | 105 | 140 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 251 | 317 | 157 |
Figure S490. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D50V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S491. Gene #50: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 22(10Q26.3) MUTATED | 19 | 35 | 116 | 72 | 58 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 155 | 151 | 289 | 62 | 68 |
Figure S491. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D50V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S492. Gene #50: 'del_10q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 22(10Q26.3) MUTATED | 66 | 47 | 99 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 183 | 209 | 110 |
Figure S492. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D50V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S493. Gene #50: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 22(10Q26.3) MUTATED | 68 | 10 | 54 | 34 | 17 | 29 |
DEL PEAK 22(10Q26.3) WILD-TYPE | 59 | 57 | 139 | 101 | 108 | 38 |
Figure S493. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S494. Gene #51: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 23(11P15.5) MUTATED | 3 | 8 | 33 | 48 | 14 | 34 | 7 | 9 |
DEL PEAK 23(11P15.5) WILD-TYPE | 18 | 28 | 86 | 48 | 95 | 38 | 13 | 31 |
Figure S494. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D51V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S495. Gene #51: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 23(11P15.5) MUTATED | 24 | 32 | 50 | 42 | 8 |
DEL PEAK 23(11P15.5) WILD-TYPE | 77 | 120 | 64 | 46 | 50 |
Figure S495. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D51V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S496. Gene #51: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 23(11P15.5) MUTATED | 34 | 84 | 19 | 158 | 7 |
DEL PEAK 23(11P15.5) WILD-TYPE | 365 | 156 | 80 | 106 | 35 |
Figure S496. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
![](D51V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S497. Gene #51: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 23(11P15.5) MUTATED | 69 | 33 | 57 | 15 | 22 |
DEL PEAK 23(11P15.5) WILD-TYPE | 63 | 164 | 120 | 73 | 106 |
Figure S497. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D51V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S498. Gene #51: 'del_11p15.5' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 23(11P15.5) MUTATED | 77 | 27 | 26 |
DEL PEAK 23(11P15.5) WILD-TYPE | 72 | 105 | 91 |
Figure S498. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D51V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S499. Gene #51: 'del_11p15.5' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 23(11P15.5) MUTATED | 11 | 20 | 48 | 36 | 15 |
DEL PEAK 23(11P15.5) WILD-TYPE | 53 | 86 | 42 | 71 | 16 |
Figure S499. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D51V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S500. Gene #51: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 23(11P15.5) MUTATED | 95 | 21 | 31 | 68 | 73 | 10 | 4 |
DEL PEAK 23(11P15.5) WILD-TYPE | 95 | 122 | 203 | 93 | 171 | 42 | 12 |
Figure S500. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D51V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S501. Gene #51: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 23(11P15.5) MUTATED | 89 | 41 | 23 | 68 | 53 | 28 |
DEL PEAK 23(11P15.5) WILD-TYPE | 89 | 202 | 174 | 112 | 131 | 30 |
Figure S501. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D51V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S502. Gene #51: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 23(11P15.5) MUTATED | 53 | 94 | 147 |
DEL PEAK 23(11P15.5) WILD-TYPE | 253 | 328 | 150 |
Figure S502. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D51V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S503. Gene #51: 'del_11p15.5' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 23(11P15.5) MUTATED | 18 | 31 | 116 | 69 | 60 |
DEL PEAK 23(11P15.5) WILD-TYPE | 156 | 155 | 289 | 65 | 66 |
Figure S503. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D51V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S504. Gene #51: 'del_11p15.5' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 23(11P15.5) MUTATED | 53 | 44 | 103 |
DEL PEAK 23(11P15.5) WILD-TYPE | 196 | 212 | 106 |
Figure S504. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D51V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S505. Gene #51: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 23(11P15.5) MUTATED | 64 | 9 | 54 | 31 | 15 | 27 |
DEL PEAK 23(11P15.5) WILD-TYPE | 63 | 58 | 139 | 104 | 110 | 40 |
Figure S505. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D51V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S506. Gene #52: 'del_11q13.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 24(11Q13.1) MUTATED | 47 | 89 | 27 | 61 | 9 |
DEL PEAK 24(11Q13.1) WILD-TYPE | 352 | 151 | 72 | 203 | 33 |
Figure S506. Get High-res Image Gene #52: 'del_11q13.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D52V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S507. Gene #52: 'del_11q13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 24(11Q13.1) MUTATED | 31 | 39 | 62 | 11 | 16 |
DEL PEAK 24(11Q13.1) WILD-TYPE | 101 | 158 | 115 | 77 | 112 |
Figure S507. Get High-res Image Gene #52: 'del_11q13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D52V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S508. Gene #52: 'del_11q13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 24(11Q13.1) MUTATED | 41 | 19 | 33 | 33 | 93 | 10 | 3 |
DEL PEAK 24(11Q13.1) WILD-TYPE | 149 | 124 | 201 | 128 | 151 | 42 | 13 |
Figure S508. Get High-res Image Gene #52: 'del_11q13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D52V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S509. Gene #52: 'del_11q13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 24(11Q13.1) MUTATED | 38 | 40 | 23 | 45 | 76 | 10 |
DEL PEAK 24(11Q13.1) WILD-TYPE | 140 | 203 | 174 | 135 | 108 | 48 |
Figure S509. Get High-res Image Gene #52: 'del_11q13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D52V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S510. Gene #53: 'del_11q23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 25(11Q23.2) MUTATED | 12 | 21 | 89 | 41 | 36 | 38 | 12 | 22 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 9 | 15 | 30 | 55 | 73 | 34 | 8 | 18 |
Figure S510. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D53V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S511. Gene #53: 'del_11q23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 25(11Q23.2) MUTATED | 77 | 74 | 65 | 38 | 17 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 24 | 78 | 49 | 50 | 41 |
Figure S511. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D53V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S512. Gene #53: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 25(11Q23.2) MUTATED | 133 | 198 | 44 | 142 | 17 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 266 | 42 | 55 | 122 | 25 |
Figure S512. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D53V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S513. Gene #53: 'del_11q23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 25(11Q23.2) MUTATED | 66 | 98 | 124 | 33 | 45 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 66 | 99 | 53 | 55 | 83 |
Figure S513. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D53V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S514. Gene #53: 'del_11q23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 25(11Q23.2) MUTATED | 20 | 55 | 42 | 75 | 17 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 44 | 51 | 48 | 32 | 14 |
Figure S514. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D53V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S515. Gene #53: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 25(11Q23.2) MUTATED | 87 | 60 | 83 | 85 | 184 | 25 | 9 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 103 | 83 | 151 | 76 | 60 | 27 | 7 |
Figure S515. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D53V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S516. Gene #53: 'del_11q23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 25(11Q23.2) MUTATED | 79 | 114 | 54 | 116 | 146 | 24 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 99 | 129 | 143 | 64 | 38 | 34 |
Figure S516. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D53V8.png)
P value = 7e-04 (Fisher's exact test), Q value = 0.13
Table S517. Gene #53: 'del_11q23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 25(11Q23.2) MUTATED | 66 | 99 | 230 | 61 | 63 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 108 | 87 | 175 | 73 | 63 |
Figure S517. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D53V10.png)
P value = 0.00126 (Fisher's exact test), Q value = 0.2
Table S518. Gene #53: 'del_11q23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 25(11Q23.2) MUTATED | 56 | 23 | 111 | 74 | 49 | 36 |
DEL PEAK 25(11Q23.2) WILD-TYPE | 71 | 44 | 82 | 61 | 76 | 31 |
Figure S518. Get High-res Image Gene #53: 'del_11q23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D53V12.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.085
Table S519. Gene #54: 'del_12p13.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 26(12P13.2) MUTATED | 45 | 52 | 14 | 60 | 6 |
DEL PEAK 26(12P13.2) WILD-TYPE | 354 | 188 | 85 | 204 | 36 |
Figure S519. Get High-res Image Gene #54: 'del_12p13.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D54V3.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.076
Table S520. Gene #54: 'del_12p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 26(12P13.2) MUTATED | 37 | 66 | 71 |
DEL PEAK 26(12P13.2) WILD-TYPE | 269 | 356 | 226 |
Figure S520. Get High-res Image Gene #54: 'del_12p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D54V9.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.077
Table S521. Gene #54: 'del_12p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 26(12P13.2) MUTATED | 16 | 26 | 68 | 30 | 34 |
DEL PEAK 26(12P13.2) WILD-TYPE | 158 | 160 | 337 | 104 | 92 |
Figure S521. Get High-res Image Gene #54: 'del_12p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D54V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S522. Gene #55: 'del_12q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 27(12Q23.1) MUTATED | 2 | 1 | 14 | 43 | 6 | 23 | 4 | 4 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 19 | 35 | 105 | 53 | 103 | 49 | 16 | 36 |
Figure S522. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D55V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S523. Gene #55: 'del_12q23.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 27(12Q23.1) MUTATED | 12 | 10 | 35 | 37 | 3 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 89 | 142 | 79 | 51 | 55 |
Figure S523. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D55V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S524. Gene #55: 'del_12q23.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 27(12Q23.1) MUTATED | 29 | 34 | 20 | 112 | 4 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 370 | 206 | 79 | 152 | 38 |
Figure S524. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D55V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S525. Gene #55: 'del_12q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 27(12Q23.1) MUTATED | 68 | 15 | 30 | 12 | 14 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 64 | 182 | 147 | 76 | 114 |
Figure S525. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D55V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S526. Gene #55: 'del_12q23.1' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 27(12Q23.1) MUTATED | 50 | 11 | 18 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 99 | 121 | 99 |
Figure S526. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D55V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S527. Gene #55: 'del_12q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 27(12Q23.1) MUTATED | 5 | 11 | 40 | 16 | 7 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 59 | 95 | 50 | 91 | 24 |
Figure S527. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D55V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S528. Gene #55: 'del_12q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 27(12Q23.1) MUTATED | 84 | 10 | 22 | 39 | 34 | 6 | 2 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 106 | 133 | 212 | 122 | 210 | 46 | 14 |
Figure S528. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D55V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S529. Gene #55: 'del_12q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 27(12Q23.1) MUTATED | 79 | 22 | 11 | 43 | 22 | 20 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 99 | 221 | 186 | 137 | 162 | 38 |
Figure S529. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D55V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S530. Gene #55: 'del_12q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 27(12Q23.1) MUTATED | 29 | 54 | 112 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 277 | 368 | 185 |
Figure S530. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D55V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S531. Gene #55: 'del_12q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 27(12Q23.1) MUTATED | 16 | 11 | 69 | 59 | 40 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 158 | 175 | 336 | 75 | 86 |
Figure S531. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D55V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S532. Gene #55: 'del_12q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 27(12Q23.1) MUTATED | 32 | 30 | 82 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 217 | 226 | 127 |
Figure S532. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D55V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S533. Gene #55: 'del_12q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 27(12Q23.1) MUTATED | 57 | 3 | 36 | 14 | 13 | 21 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 70 | 64 | 157 | 121 | 112 | 46 |
Figure S533. Get High-res Image Gene #55: 'del_12q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S534. Gene #56: 'del_12q24.31' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 28(12Q24.31) MUTATED | 4 | 6 | 12 | 42 | 6 | 20 | 5 | 6 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 17 | 30 | 107 | 54 | 103 | 52 | 15 | 34 |
Figure S534. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D56V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S535. Gene #56: 'del_12q24.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 28(12Q24.31) MUTATED | 10 | 15 | 35 | 37 | 4 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 91 | 137 | 79 | 51 | 54 |
Figure S535. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D56V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S536. Gene #56: 'del_12q24.31' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 28(12Q24.31) MUTATED | 38 | 31 | 20 | 111 | 5 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 361 | 209 | 79 | 153 | 37 |
Figure S536. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #3: 'CN_CNMF'
![](D56V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S537. Gene #56: 'del_12q24.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 28(12Q24.31) MUTATED | 68 | 18 | 26 | 14 | 16 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 64 | 179 | 151 | 74 | 112 |
Figure S537. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D56V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S538. Gene #56: 'del_12q24.31' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 28(12Q24.31) MUTATED | 49 | 13 | 20 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 100 | 119 | 97 |
Figure S538. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D56V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S539. Gene #56: 'del_12q24.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 28(12Q24.31) MUTATED | 7 | 13 | 36 | 16 | 10 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 57 | 93 | 54 | 91 | 21 |
Figure S539. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D56V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S540. Gene #56: 'del_12q24.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 28(12Q24.31) MUTATED | 82 | 19 | 24 | 42 | 27 | 8 | 2 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 108 | 124 | 210 | 119 | 217 | 44 | 14 |
Figure S540. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D56V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S541. Gene #56: 'del_12q24.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 28(12Q24.31) MUTATED | 77 | 36 | 12 | 40 | 19 | 20 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 101 | 207 | 185 | 140 | 165 | 38 |
Figure S541. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D56V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S542. Gene #56: 'del_12q24.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 28(12Q24.31) MUTATED | 41 | 57 | 104 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 265 | 365 | 193 |
Figure S542. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D56V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S543. Gene #56: 'del_12q24.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 28(12Q24.31) MUTATED | 24 | 12 | 69 | 58 | 39 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 150 | 174 | 336 | 76 | 87 |
Figure S543. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D56V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S544. Gene #56: 'del_12q24.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 28(12Q24.31) MUTATED | 34 | 34 | 76 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 215 | 222 | 133 |
Figure S544. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D56V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S545. Gene #56: 'del_12q24.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 28(12Q24.31) MUTATED | 52 | 3 | 36 | 14 | 19 | 20 |
DEL PEAK 28(12Q24.31) WILD-TYPE | 75 | 64 | 157 | 121 | 106 | 47 |
Figure S545. Get High-res Image Gene #56: 'del_12q24.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V12.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S546. Gene #57: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 29(13Q14.2) MUTATED | 8 | 12 | 70 | 60 | 34 | 41 | 9 | 13 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 13 | 24 | 49 | 36 | 75 | 31 | 11 | 27 |
Figure S546. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D57V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S547. Gene #57: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 29(13Q14.2) MUTATED | 64 | 47 | 67 | 56 | 13 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 37 | 105 | 47 | 32 | 45 |
Figure S547. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D57V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S548. Gene #57: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 29(13Q14.2) MUTATED | 88 | 153 | 62 | 158 | 24 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 311 | 87 | 37 | 106 | 18 |
Figure S548. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D57V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S549. Gene #57: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 29(13Q14.2) MUTATED | 84 | 81 | 97 | 24 | 44 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 48 | 116 | 80 | 64 | 84 |
Figure S549. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D57V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S550. Gene #57: 'del_13q14.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 29(13Q14.2) MUTATED | 19 | 44 | 58 | 61 | 10 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 45 | 62 | 32 | 46 | 21 |
Figure S550. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D57V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S551. Gene #57: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 29(13Q14.2) MUTATED | 120 | 41 | 86 | 81 | 130 | 16 | 9 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 70 | 102 | 148 | 80 | 114 | 36 | 7 |
Figure S551. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D57V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S552. Gene #57: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 29(13Q14.2) MUTATED | 112 | 77 | 60 | 104 | 104 | 26 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 66 | 166 | 137 | 76 | 80 | 32 |
Figure S552. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D57V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S553. Gene #57: 'del_13q14.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 29(13Q14.2) MUTATED | 97 | 206 | 171 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 209 | 216 | 126 |
Figure S553. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D57V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S554. Gene #57: 'del_13q14.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 29(13Q14.2) MUTATED | 45 | 82 | 199 | 89 | 59 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 129 | 104 | 206 | 45 | 67 |
Figure S554. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D57V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S555. Gene #57: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 29(13Q14.2) MUTATED | 111 | 83 | 122 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 138 | 173 | 87 |
Figure S555. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D57V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S556. Gene #57: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 29(13Q14.2) MUTATED | 78 | 17 | 98 | 59 | 31 | 33 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 49 | 50 | 95 | 76 | 94 | 34 |
Figure S556. Get High-res Image Gene #57: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S557. Gene #58: 'del_14q24.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 30(14Q24.1) MUTATED | 4 | 7 | 47 | 63 | 10 | 22 | 10 | 8 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 17 | 29 | 72 | 33 | 99 | 50 | 10 | 32 |
Figure S557. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D58V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S558. Gene #58: 'del_14q24.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 30(14Q24.1) MUTATED | 37 | 30 | 41 | 59 | 4 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 64 | 122 | 73 | 29 | 54 |
Figure S558. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D58V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S559. Gene #58: 'del_14q24.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 30(14Q24.1) MUTATED | 48 | 88 | 22 | 169 | 14 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 351 | 152 | 77 | 95 | 28 |
Figure S559. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D58V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S560. Gene #58: 'del_14q24.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 30(14Q24.1) MUTATED | 88 | 38 | 58 | 17 | 31 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 44 | 159 | 119 | 71 | 97 |
Figure S560. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D58V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S561. Gene #58: 'del_14q24.1' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 30(14Q24.1) MUTATED | 77 | 27 | 33 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 72 | 105 | 84 |
Figure S561. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D58V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S562. Gene #58: 'del_14q24.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 30(14Q24.1) MUTATED | 6 | 27 | 58 | 38 | 8 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 58 | 79 | 32 | 69 | 23 |
Figure S562. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D58V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S563. Gene #58: 'del_14q24.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 30(14Q24.1) MUTATED | 126 | 23 | 28 | 52 | 97 | 8 | 6 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 64 | 120 | 206 | 109 | 147 | 44 | 10 |
Figure S563. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D58V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S564. Gene #58: 'del_14q24.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 30(14Q24.1) MUTATED | 121 | 44 | 22 | 75 | 63 | 15 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 57 | 199 | 175 | 105 | 121 | 43 |
Figure S564. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D58V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S565. Gene #58: 'del_14q24.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 30(14Q24.1) MUTATED | 60 | 105 | 166 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 246 | 317 | 131 |
Figure S565. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D58V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S566. Gene #58: 'del_14q24.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 30(14Q24.1) MUTATED | 20 | 41 | 120 | 96 | 54 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 154 | 145 | 285 | 38 | 72 |
Figure S566. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D58V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S567. Gene #58: 'del_14q24.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 30(14Q24.1) MUTATED | 69 | 47 | 122 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 180 | 209 | 87 |
Figure S567. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D58V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S568. Gene #58: 'del_14q24.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 30(14Q24.1) MUTATED | 85 | 12 | 64 | 38 | 14 | 25 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 42 | 55 | 129 | 97 | 111 | 42 |
Figure S568. Get High-res Image Gene #58: 'del_14q24.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S569. Gene #59: 'del_15q13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 31(15Q13.1) MUTATED | 5 | 11 | 41 | 58 | 24 | 34 | 10 | 8 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 16 | 25 | 78 | 38 | 85 | 38 | 10 | 32 |
Figure S569. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D59V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S570. Gene #59: 'del_15q13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 31(15Q13.1) MUTATED | 36 | 35 | 54 | 54 | 12 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 65 | 117 | 60 | 34 | 46 |
Figure S570. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D59V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S571. Gene #59: 'del_15q13.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 31(15Q13.1) MUTATED | 44 | 85 | 47 | 175 | 13 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 355 | 155 | 52 | 89 | 29 |
Figure S571. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D59V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S572. Gene #59: 'del_15q13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 31(15Q13.1) MUTATED | 86 | 45 | 65 | 20 | 29 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 46 | 152 | 112 | 68 | 99 |
Figure S572. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D59V4.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.016
Table S573. Gene #59: 'del_15q13.1' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 31(15Q13.1) MUTATED | 80 | 39 | 38 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 69 | 93 | 79 |
Figure S573. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D59V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S574. Gene #59: 'del_15q13.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 31(15Q13.1) MUTATED | 18 | 29 | 54 | 43 | 13 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 46 | 77 | 36 | 64 | 18 |
Figure S574. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D59V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S575. Gene #59: 'del_15q13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 31(15Q13.1) MUTATED | 122 | 24 | 53 | 69 | 80 | 7 | 7 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 68 | 119 | 181 | 92 | 164 | 45 | 9 |
Figure S575. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D59V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S576. Gene #59: 'del_15q13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 31(15Q13.1) MUTATED | 118 | 47 | 32 | 83 | 62 | 20 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 60 | 196 | 165 | 97 | 122 | 38 |
Figure S576. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D59V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S577. Gene #59: 'del_15q13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 31(15Q13.1) MUTATED | 53 | 132 | 170 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 253 | 290 | 127 |
Figure S577. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D59V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S578. Gene #59: 'del_15q13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 31(15Q13.1) MUTATED | 24 | 35 | 145 | 97 | 54 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 150 | 151 | 260 | 37 | 72 |
Figure S578. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D59V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S579. Gene #59: 'del_15q13.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 31(15Q13.1) MUTATED | 82 | 46 | 117 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 167 | 210 | 92 |
Figure S579. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D59V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S580. Gene #59: 'del_15q13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 31(15Q13.1) MUTATED | 85 | 12 | 78 | 23 | 19 | 28 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 42 | 55 | 115 | 112 | 106 | 39 |
Figure S580. Get High-res Image Gene #59: 'del_15q13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S581. Gene #60: 'del_16q24.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 32(16Q24.3) MUTATED | 16 | 25 | 81 | 27 | 94 | 45 | 13 | 35 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 5 | 11 | 38 | 69 | 15 | 27 | 7 | 5 |
Figure S581. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D60V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S582. Gene #60: 'del_16q24.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 32(16Q24.3) MUTATED | 74 | 124 | 71 | 22 | 45 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 27 | 28 | 43 | 66 | 13 |
Figure S582. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D60V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S583. Gene #60: 'del_16q24.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 32(16Q24.3) MUTATED | 285 | 154 | 81 | 119 | 33 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 114 | 86 | 18 | 145 | 9 |
Figure S583. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D60V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S584. Gene #60: 'del_16q24.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 32(16Q24.3) MUTATED | 53 | 152 | 118 | 61 | 72 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 79 | 45 | 59 | 27 | 56 |
Figure S584. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D60V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S585. Gene #60: 'del_16q24.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 32(16Q24.3) MUTATED | 64 | 103 | 84 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 85 | 29 | 33 |
Figure S585. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D60V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S586. Gene #60: 'del_16q24.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 32(16Q24.3) MUTATED | 54 | 80 | 28 | 74 | 15 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 10 | 26 | 62 | 33 | 16 |
Figure S586. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D60V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S587. Gene #60: 'del_16q24.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 32(16Q24.3) MUTATED | 62 | 111 | 198 | 91 | 153 | 42 | 12 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 128 | 32 | 36 | 70 | 91 | 10 | 4 |
Figure S587. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D60V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S588. Gene #60: 'del_16q24.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 32(16Q24.3) MUTATED | 56 | 191 | 154 | 115 | 126 | 27 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 122 | 52 | 43 | 65 | 58 | 31 |
Figure S588. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D60V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S589. Gene #60: 'del_16q24.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 32(16Q24.3) MUTATED | 229 | 306 | 125 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 77 | 116 | 172 |
Figure S589. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D60V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S590. Gene #60: 'del_16q24.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 32(16Q24.3) MUTATED | 136 | 136 | 281 | 47 | 60 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 38 | 50 | 124 | 87 | 66 |
Figure S590. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D60V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S591. Gene #60: 'del_16q24.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 32(16Q24.3) MUTATED | 171 | 190 | 92 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 78 | 66 | 117 |
Figure S591. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D60V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S592. Gene #60: 'del_16q24.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 32(16Q24.3) MUTATED | 45 | 49 | 138 | 79 | 108 | 34 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 82 | 18 | 55 | 56 | 17 | 33 |
Figure S592. Get High-res Image Gene #60: 'del_16q24.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D60V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S593. Gene #61: 'del_17p12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 33(17P12) MUTATED | 14 | 27 | 78 | 65 | 33 | 62 | 15 | 24 |
DEL PEAK 33(17P12) WILD-TYPE | 7 | 9 | 41 | 31 | 76 | 10 | 5 | 16 |
Figure S593. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D61V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S594. Gene #61: 'del_17p12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 33(17P12) MUTATED | 69 | 86 | 93 | 58 | 12 |
DEL PEAK 33(17P12) WILD-TYPE | 32 | 66 | 21 | 30 | 46 |
Figure S594. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D61V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S595. Gene #61: 'del_17p12' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 33(17P12) MUTATED | 160 | 189 | 50 | 206 | 24 |
DEL PEAK 33(17P12) WILD-TYPE | 239 | 51 | 49 | 58 | 18 |
Figure S595. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #3: 'CN_CNMF'
![](D61V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S596. Gene #61: 'del_17p12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 33(17P12) MUTATED | 87 | 98 | 133 | 43 | 65 |
DEL PEAK 33(17P12) WILD-TYPE | 45 | 99 | 44 | 45 | 63 |
Figure S596. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D61V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S597. Gene #61: 'del_17p12' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 33(17P12) MUTATED | 116 | 66 | 66 |
DEL PEAK 33(17P12) WILD-TYPE | 33 | 66 | 51 |
Figure S597. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D61V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S598. Gene #61: 'del_17p12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 33(17P12) MUTATED | 23 | 57 | 65 | 77 | 26 |
DEL PEAK 33(17P12) WILD-TYPE | 41 | 49 | 25 | 30 | 5 |
Figure S598. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D61V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S599. Gene #61: 'del_17p12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 33(17P12) MUTATED | 120 | 77 | 83 | 134 | 173 | 27 | 12 |
DEL PEAK 33(17P12) WILD-TYPE | 70 | 66 | 151 | 27 | 71 | 25 | 4 |
Figure S599. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D61V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S600. Gene #61: 'del_17p12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 33(17P12) MUTATED | 113 | 132 | 56 | 148 | 131 | 46 |
DEL PEAK 33(17P12) WILD-TYPE | 65 | 111 | 141 | 32 | 53 | 12 |
Figure S600. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S601. Gene #61: 'del_17p12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 33(17P12) MUTATED | 154 | 252 | 212 |
DEL PEAK 33(17P12) WILD-TYPE | 152 | 170 | 85 |
Figure S601. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D61V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S602. Gene #61: 'del_17p12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 33(17P12) MUTATED | 72 | 98 | 269 | 91 | 88 |
DEL PEAK 33(17P12) WILD-TYPE | 102 | 88 | 136 | 43 | 38 |
Figure S602. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D61V10.png)
P value = 0.00071 (Fisher's exact test), Q value = 0.13
Table S603. Gene #61: 'del_17p12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 33(17P12) MUTATED | 146 | 133 | 145 |
DEL PEAK 33(17P12) WILD-TYPE | 103 | 123 | 64 |
Figure S603. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D61V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S604. Gene #61: 'del_17p12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 33(17P12) MUTATED | 78 | 32 | 133 | 74 | 54 | 53 |
DEL PEAK 33(17P12) WILD-TYPE | 49 | 35 | 60 | 61 | 71 | 14 |
Figure S604. Get High-res Image Gene #61: 'del_17p12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D61V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S605. Gene #62: 'del_17q21.31' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 34(17Q21.31) MUTATED | 7 | 17 | 28 | 53 | 13 | 50 | 9 | 15 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 14 | 19 | 91 | 43 | 96 | 22 | 11 | 25 |
Figure S605. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D62V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S606. Gene #62: 'del_17q21.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 34(17Q21.31) MUTATED | 24 | 49 | 70 | 46 | 3 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 77 | 103 | 44 | 42 | 55 |
Figure S606. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D62V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S607. Gene #62: 'del_17q21.31' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 34(17Q21.31) MUTATED | 81 | 79 | 24 | 170 | 8 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 318 | 161 | 75 | 94 | 34 |
Figure S607. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #3: 'CN_CNMF'
![](D62V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S608. Gene #62: 'del_17q21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 34(17Q21.31) MUTATED | 81 | 30 | 63 | 18 | 40 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 51 | 167 | 114 | 70 | 88 |
Figure S608. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D62V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S609. Gene #62: 'del_17q21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 34(17Q21.31) MUTATED | 90 | 24 | 44 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 59 | 108 | 73 |
Figure S609. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D62V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S610. Gene #62: 'del_17q21.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 34(17Q21.31) MUTATED | 10 | 34 | 52 | 36 | 26 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 54 | 72 | 38 | 71 | 5 |
Figure S610. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D62V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S611. Gene #62: 'del_17q21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 34(17Q21.31) MUTATED | 101 | 33 | 34 | 114 | 59 | 14 | 6 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 89 | 110 | 200 | 47 | 185 | 38 | 10 |
Figure S611. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D62V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S612. Gene #62: 'del_17q21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 34(17Q21.31) MUTATED | 96 | 71 | 16 | 98 | 40 | 40 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 82 | 172 | 181 | 82 | 144 | 18 |
Figure S612. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D62V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S613. Gene #62: 'del_17q21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 34(17Q21.31) MUTATED | 69 | 124 | 161 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 237 | 298 | 136 |
Figure S613. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D62V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S614. Gene #62: 'del_17q21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 34(17Q21.31) MUTATED | 34 | 31 | 154 | 80 | 55 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 140 | 155 | 251 | 54 | 71 |
Figure S614. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D62V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S615. Gene #62: 'del_17q21.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 34(17Q21.31) MUTATED | 77 | 58 | 115 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 172 | 198 | 94 |
Figure S615. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D62V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S616. Gene #62: 'del_17q21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 34(17Q21.31) MUTATED | 68 | 13 | 80 | 31 | 21 | 37 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 59 | 54 | 113 | 104 | 104 | 30 |
Figure S616. Get High-res Image Gene #62: 'del_17q21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V12.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.02
Table S617. Gene #63: 'del_18q23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 35(18Q23) MUTATED | 6 | 13 | 38 | 38 | 18 | 37 | 6 | 9 |
DEL PEAK 35(18Q23) WILD-TYPE | 15 | 23 | 81 | 58 | 91 | 35 | 14 | 31 |
Figure S617. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D63V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.012
Table S618. Gene #63: 'del_18q23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 35(18Q23) MUTATED | 31 | 35 | 54 | 35 | 10 |
DEL PEAK 35(18Q23) WILD-TYPE | 70 | 117 | 60 | 53 | 48 |
Figure S618. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D63V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S619. Gene #63: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 35(18Q23) MUTATED | 66 | 103 | 36 | 127 | 11 |
DEL PEAK 35(18Q23) WILD-TYPE | 333 | 137 | 63 | 137 | 31 |
Figure S619. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
![](D63V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S620. Gene #63: 'del_18q23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 35(18Q23) MUTATED | 59 | 47 | 88 | 17 | 30 |
DEL PEAK 35(18Q23) WILD-TYPE | 73 | 150 | 89 | 71 | 98 |
Figure S620. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D63V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S621. Gene #63: 'del_18q23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 35(18Q23) MUTATED | 79 | 28 | 45 | 81 | 87 | 16 | 5 |
DEL PEAK 35(18Q23) WILD-TYPE | 111 | 115 | 189 | 80 | 157 | 36 | 11 |
Figure S621. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D63V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S622. Gene #63: 'del_18q23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 35(18Q23) MUTATED | 75 | 63 | 28 | 100 | 49 | 26 |
DEL PEAK 35(18Q23) WILD-TYPE | 103 | 180 | 169 | 80 | 135 | 32 |
Figure S622. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D63V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S623. Gene #63: 'del_18q23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 35(18Q23) MUTATED | 74 | 137 | 128 |
DEL PEAK 35(18Q23) WILD-TYPE | 232 | 285 | 169 |
Figure S623. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D63V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S624. Gene #63: 'del_18q23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 35(18Q23) MUTATED | 33 | 48 | 141 | 55 | 62 |
DEL PEAK 35(18Q23) WILD-TYPE | 141 | 138 | 264 | 79 | 64 |
Figure S624. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D63V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S625. Gene #63: 'del_18q23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 35(18Q23) MUTATED | 76 | 60 | 93 |
DEL PEAK 35(18Q23) WILD-TYPE | 173 | 196 | 116 |
Figure S625. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D63V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S626. Gene #63: 'del_18q23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 35(18Q23) MUTATED | 56 | 14 | 72 | 27 | 28 | 32 |
DEL PEAK 35(18Q23) WILD-TYPE | 71 | 53 | 121 | 108 | 97 | 35 |
Figure S626. Get High-res Image Gene #63: 'del_18q23' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S627. Gene #64: 'del_19p13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 36(19P13.3) MUTATED | 7 | 10 | 49 | 56 | 13 | 34 | 6 | 6 |
DEL PEAK 36(19P13.3) WILD-TYPE | 14 | 26 | 70 | 40 | 96 | 38 | 14 | 34 |
Figure S627. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D64V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S628. Gene #64: 'del_19p13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 36(19P13.3) MUTATED | 45 | 28 | 53 | 52 | 3 |
DEL PEAK 36(19P13.3) WILD-TYPE | 56 | 124 | 61 | 36 | 55 |
Figure S628. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D64V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S629. Gene #64: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 36(19P13.3) MUTATED | 36 | 124 | 13 | 162 | 15 |
DEL PEAK 36(19P13.3) WILD-TYPE | 363 | 116 | 86 | 102 | 27 |
Figure S629. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
![](D64V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S630. Gene #64: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 36(19P13.3) MUTATED | 73 | 35 | 67 | 12 | 34 |
DEL PEAK 36(19P13.3) WILD-TYPE | 59 | 162 | 110 | 76 | 94 |
Figure S630. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D64V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S631. Gene #64: 'del_19p13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 36(19P13.3) MUTATED | 79 | 37 | 32 |
DEL PEAK 36(19P13.3) WILD-TYPE | 70 | 95 | 85 |
Figure S631. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D64V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S632. Gene #64: 'del_19p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 36(19P13.3) MUTATED | 6 | 31 | 49 | 45 | 17 |
DEL PEAK 36(19P13.3) WILD-TYPE | 58 | 75 | 41 | 62 | 14 |
Figure S632. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D64V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S633. Gene #64: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 36(19P13.3) MUTATED | 109 | 21 | 26 | 70 | 104 | 10 | 9 |
DEL PEAK 36(19P13.3) WILD-TYPE | 81 | 122 | 208 | 91 | 140 | 42 | 7 |
Figure S633. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D64V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S634. Gene #64: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 36(19P13.3) MUTATED | 105 | 39 | 18 | 98 | 69 | 20 |
DEL PEAK 36(19P13.3) WILD-TYPE | 73 | 204 | 179 | 82 | 115 | 38 |
Figure S634. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D64V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S635. Gene #64: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 36(19P13.3) MUTATED | 47 | 130 | 163 |
DEL PEAK 36(19P13.3) WILD-TYPE | 259 | 292 | 134 |
Figure S635. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D64V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S636. Gene #64: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 36(19P13.3) MUTATED | 13 | 43 | 139 | 83 | 62 |
DEL PEAK 36(19P13.3) WILD-TYPE | 161 | 143 | 266 | 51 | 64 |
Figure S636. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D64V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S637. Gene #64: 'del_19p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 36(19P13.3) MUTATED | 71 | 49 | 117 |
DEL PEAK 36(19P13.3) WILD-TYPE | 178 | 207 | 92 |
Figure S637. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D64V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S638. Gene #64: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 36(19P13.3) MUTATED | 74 | 8 | 67 | 44 | 12 | 32 |
DEL PEAK 36(19P13.3) WILD-TYPE | 53 | 59 | 126 | 91 | 113 | 35 |
Figure S638. Get High-res Image Gene #64: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D64V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S639. Gene #65: 'del_19q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 37(19Q13.32) MUTATED | 4 | 7 | 23 | 26 | 7 | 28 | 1 | 3 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 17 | 29 | 96 | 70 | 102 | 44 | 19 | 37 |
Figure S639. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D65V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S640. Gene #65: 'del_19q13.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 37(19Q13.32) MUTATED | 26 | 11 | 36 | 24 | 2 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 75 | 141 | 78 | 64 | 56 |
Figure S640. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D65V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S641. Gene #65: 'del_19q13.32' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 37(19Q13.32) MUTATED | 21 | 83 | 7 | 89 | 6 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 378 | 157 | 92 | 175 | 36 |
Figure S641. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #3: 'CN_CNMF'
![](D65V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S642. Gene #65: 'del_19q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 37(19Q13.32) MUTATED | 47 | 19 | 47 | 8 | 18 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 85 | 178 | 130 | 80 | 110 |
Figure S642. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D65V4.png)
P value = 0.00054 (Fisher's exact test), Q value = 0.099
Table S643. Gene #65: 'del_19q13.32' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 37(19Q13.32) MUTATED | 45 | 20 | 15 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 104 | 112 | 102 |
Figure S643. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D65V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.0083
Table S644. Gene #65: 'del_19q13.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 37(19Q13.32) MUTATED | 4 | 12 | 30 | 23 | 11 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 60 | 94 | 60 | 84 | 20 |
Figure S644. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D65V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S645. Gene #65: 'del_19q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 37(19Q13.32) MUTATED | 57 | 8 | 17 | 58 | 61 | 4 | 1 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 133 | 135 | 217 | 103 | 183 | 48 | 15 |
Figure S645. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D65V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S646. Gene #65: 'del_19q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 37(19Q13.32) MUTATED | 57 | 17 | 9 | 56 | 48 | 19 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 121 | 226 | 188 | 124 | 136 | 39 |
Figure S646. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D65V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S647. Gene #65: 'del_19q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 37(19Q13.32) MUTATED | 20 | 82 | 97 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 286 | 340 | 200 |
Figure S647. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D65V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S648. Gene #65: 'del_19q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 37(19Q13.32) MUTATED | 7 | 25 | 89 | 46 | 32 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 167 | 161 | 316 | 88 | 94 |
Figure S648. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D65V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S649. Gene #65: 'del_19q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 37(19Q13.32) MUTATED | 49 | 20 | 73 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 200 | 236 | 136 |
Figure S649. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D65V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S650. Gene #65: 'del_19q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 37(19Q13.32) MUTATED | 43 | 4 | 45 | 22 | 5 | 23 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 84 | 63 | 148 | 113 | 120 | 44 |
Figure S650. Get High-res Image Gene #65: 'del_19q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D65V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S651. Gene #66: 'del_20p13' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 38(20P13) MUTATED | 1 | 3 | 28 | 25 | 3 | 16 | 3 | 1 |
DEL PEAK 38(20P13) WILD-TYPE | 20 | 33 | 91 | 71 | 106 | 56 | 17 | 39 |
Figure S651. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D66V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S652. Gene #66: 'del_20p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
DEL PEAK 38(20P13) MUTATED | 23 | 9 | 25 | 23 | 0 |
DEL PEAK 38(20P13) WILD-TYPE | 78 | 143 | 89 | 65 | 58 |
Figure S652. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D66V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S653. Gene #66: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 38(20P13) MUTATED | 18 | 44 | 6 | 80 | 8 |
DEL PEAK 38(20P13) WILD-TYPE | 381 | 196 | 93 | 184 | 34 |
Figure S653. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
![](D66V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S654. Gene #66: 'del_20p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 38(20P13) MUTATED | 44 | 11 | 29 | 8 | 10 |
DEL PEAK 38(20P13) WILD-TYPE | 88 | 186 | 148 | 80 | 118 |
Figure S654. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D66V4.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.049
Table S655. Gene #66: 'del_20p13' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 149 | 132 | 117 |
DEL PEAK 38(20P13) MUTATED | 37 | 10 | 17 |
DEL PEAK 38(20P13) WILD-TYPE | 112 | 122 | 100 |
Figure S655. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D66V5.png)
P value = 0.00085 (Fisher's exact test), Q value = 0.15
Table S656. Gene #66: 'del_20p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 64 | 106 | 90 | 107 | 31 |
DEL PEAK 38(20P13) MUTATED | 5 | 8 | 24 | 20 | 7 |
DEL PEAK 38(20P13) WILD-TYPE | 59 | 98 | 66 | 87 | 24 |
Figure S656. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D66V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S657. Gene #66: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 38(20P13) MUTATED | 56 | 7 | 9 | 27 | 53 | 2 | 1 |
DEL PEAK 38(20P13) WILD-TYPE | 134 | 136 | 225 | 134 | 191 | 50 | 15 |
Figure S657. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D66V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S658. Gene #66: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 38(20P13) MUTATED | 55 | 13 | 6 | 35 | 34 | 12 |
DEL PEAK 38(20P13) WILD-TYPE | 123 | 230 | 191 | 145 | 150 | 46 |
Figure S658. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D66V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S659. Gene #66: 'del_20p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 306 | 422 | 297 |
DEL PEAK 38(20P13) MUTATED | 16 | 48 | 83 |
DEL PEAK 38(20P13) WILD-TYPE | 290 | 374 | 214 |
Figure S659. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D66V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S660. Gene #66: 'del_20p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 38(20P13) MUTATED | 8 | 17 | 48 | 43 | 31 |
DEL PEAK 38(20P13) WILD-TYPE | 166 | 169 | 357 | 91 | 95 |
Figure S660. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D66V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S661. Gene #66: 'del_20p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 249 | 256 | 209 |
DEL PEAK 38(20P13) MUTATED | 28 | 16 | 60 |
DEL PEAK 38(20P13) WILD-TYPE | 221 | 240 | 149 |
Figure S661. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D66V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S662. Gene #66: 'del_20p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 38(20P13) MUTATED | 41 | 2 | 23 | 18 | 4 | 16 |
DEL PEAK 38(20P13) WILD-TYPE | 86 | 65 | 170 | 117 | 121 | 51 |
Figure S662. Get High-res Image Gene #66: 'del_20p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V12.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.039
Table S663. Gene #67: 'del_21q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
DEL PEAK 39(21Q11.2) MUTATED | 3 | 11 | 37 | 16 | 11 | 23 | 3 | 4 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 18 | 25 | 82 | 80 | 98 | 49 | 17 | 36 |
Figure S663. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S664. Gene #67: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 39(21Q11.2) MUTATED | 31 | 85 | 17 | 66 | 10 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 368 | 155 | 82 | 198 | 32 |
Figure S664. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
![](D67V3.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.053
Table S665. Gene #67: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 132 | 197 | 177 | 88 | 128 |
DEL PEAK 39(21Q11.2) MUTATED | 22 | 38 | 53 | 8 | 18 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 110 | 159 | 124 | 80 | 110 |
Figure S665. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D67V4.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.023
Table S666. Gene #67: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 190 | 143 | 234 | 161 | 244 | 52 | 16 |
DEL PEAK 39(21Q11.2) MUTATED | 31 | 21 | 33 | 44 | 70 | 6 | 3 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 159 | 122 | 201 | 117 | 174 | 46 | 13 |
Figure S666. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D67V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S667. Gene #67: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 178 | 243 | 197 | 180 | 184 | 58 |
DEL PEAK 39(21Q11.2) MUTATED | 29 | 35 | 22 | 62 | 45 | 15 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 149 | 208 | 175 | 118 | 139 | 43 |
Figure S667. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D67V8.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.0097
Table S668. Gene #67: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 174 | 186 | 405 | 134 | 126 |
DEL PEAK 39(21Q11.2) MUTATED | 20 | 26 | 105 | 20 | 33 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 154 | 160 | 300 | 114 | 93 |
Figure S668. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D67V10.png)
P value = 0.00066 (Fisher's exact test), Q value = 0.12
Table S669. Gene #67: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 127 | 67 | 193 | 135 | 125 | 67 |
DEL PEAK 39(21Q11.2) MUTATED | 18 | 6 | 52 | 24 | 14 | 17 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 109 | 61 | 141 | 111 | 111 | 50 |
Figure S669. Get High-res Image Gene #67: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S670. Gene #68: 'del_22q11.1' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 40(22Q11.1) MUTATED | 126 | 123 | 64 | 125 | 15 |
DEL PEAK 40(22Q11.1) WILD-TYPE | 273 | 117 | 35 | 139 | 27 |
Figure S670. Get High-res Image Gene #68: 'del_22q11.1' versus Molecular Subtype #3: 'CN_CNMF'
![](D68V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0083
Table S671. Gene #69: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 399 | 240 | 99 | 264 | 42 |
DEL PEAK 41(22Q13.32) MUTATED | 132 | 134 | 68 | 127 | 20 |
DEL PEAK 41(22Q13.32) WILD-TYPE | 267 | 106 | 31 | 137 | 22 |
Figure S671. Get High-res Image Gene #69: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
![](D69V3.png)
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Copy number data file = transformed.cor.cli.txt
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Molecular subtype file = BRCA-TP.transferedmergedcluster.txt
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Number of patients = 1044
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Number of significantly focal cnvs = 69
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.