This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 29 genes and 12 molecular subtypes across 417 patients, 15 significant findings detected with P value < 0.05 and Q value < 0.25.
-
SETD2 mutation correlated to 'METHLYATION_CNMF'.
-
BAP1 mutation correlated to 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
PTEN mutation correlated to 'MRNASEQ_CNMF'.
-
PBRM1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
KDM5C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
MTOR mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between mutation status of 29 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 15 significant findings detected.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
BAP1 | 41 (10%) | 376 |
0.0315 (1.00) |
0.00055 (0.143) |
0.011 (1.00) |
0.00012 (0.0314) |
0.00085 (0.218) |
0.066 (1.00) |
4e-05 (0.0106) |
1e-05 (0.00269) |
7e-05 (0.0184) |
1e-05 (0.00269) |
0.351 (1.00) |
0.0371 (1.00) |
PBRM1 | 136 (33%) | 281 |
0.153 (1.00) |
0.059 (1.00) |
0.138 (1.00) |
3e-05 (0.00795) |
0.00071 (0.183) |
0.253 (1.00) |
0.00642 (1.00) |
0.027 (1.00) |
0.00379 (0.947) |
0.0599 (1.00) |
1e-05 (0.00269) |
0.0545 (1.00) |
MTOR | 23 (6%) | 394 |
0.565 (1.00) |
0.154 (1.00) |
0.00047 (0.123) |
0.00076 (0.195) |
0.657 (1.00) |
0.447 (1.00) |
0.345 (1.00) |
0.0326 (1.00) |
0.0647 (1.00) |
0.0033 (0.828) |
||
SETD2 | 44 (11%) | 373 |
1 (1.00) |
0.499 (1.00) |
0.668 (1.00) |
1e-05 (0.00269) |
0.639 (1.00) |
0.161 (1.00) |
0.464 (1.00) |
0.08 (1.00) |
0.778 (1.00) |
0.762 (1.00) |
0.621 (1.00) |
0.0592 (1.00) |
PTEN | 18 (4%) | 399 |
0.107 (1.00) |
0.0319 (1.00) |
0.212 (1.00) |
0.168 (1.00) |
0.259 (1.00) |
0.156 (1.00) |
0.00098 (0.25) |
0.00111 (0.282) |
0.00867 (1.00) |
0.041 (1.00) |
0.0157 (1.00) |
0.0552 (1.00) |
KDM5C | 26 (6%) | 391 |
0.188 (1.00) |
0.0891 (1.00) |
0.436 (1.00) |
0.756 (1.00) |
0.109 (1.00) |
0.00069 (0.179) |
0.00426 (1.00) |
0.635 (1.00) |
0.374 (1.00) |
0.137 (1.00) |
||
VHL | 166 (40%) | 251 |
0.113 (1.00) |
0.226 (1.00) |
0.114 (1.00) |
0.748 (1.00) |
0.774 (1.00) |
0.393 (1.00) |
0.014 (1.00) |
0.513 (1.00) |
0.161 (1.00) |
0.00267 (0.673) |
0.672 (1.00) |
0.159 (1.00) |
FAM200A | 5 (1%) | 412 |
0.0014 (0.354) |
0.031 (1.00) |
0.318 (1.00) |
0.159 (1.00) |
0.412 (1.00) |
0.207 (1.00) |
0.586 (1.00) |
|||||
TP53 | 9 (2%) | 408 |
0.767 (1.00) |
0.511 (1.00) |
0.515 (1.00) |
0.648 (1.00) |
0.456 (1.00) |
0.311 (1.00) |
0.464 (1.00) |
0.173 (1.00) |
0.227 (1.00) |
0.271 (1.00) |
||
NEFH | 5 (1%) | 412 |
0.858 (1.00) |
0.54 (1.00) |
0.978 (1.00) |
0.116 (1.00) |
0.0124 (1.00) |
0.0162 (1.00) |
0.618 (1.00) |
0.405 (1.00) |
0.683 (1.00) |
1 (1.00) |
||
CCDC120 | 4 (1%) | 413 |
0.183 (1.00) |
0.564 (1.00) |
0.794 (1.00) |
0.675 (1.00) |
0.816 (1.00) |
0.822 (1.00) |
1 (1.00) |
0.613 (1.00) |
0.163 (1.00) |
|||
GUSB | 4 (1%) | 413 |
0.684 (1.00) |
0.449 (1.00) |
0.446 (1.00) |
0.185 (1.00) |
0.195 (1.00) |
0.459 (1.00) |
0.516 (1.00) |
|||||
PIK3CA | 12 (3%) | 405 |
0.294 (1.00) |
0.655 (1.00) |
0.889 (1.00) |
0.73 (1.00) |
0.287 (1.00) |
0.537 (1.00) |
0.751 (1.00) |
0.8 (1.00) |
0.612 (1.00) |
0.605 (1.00) |
||
PCK1 | 5 (1%) | 412 |
0.227 (1.00) |
0.615 (1.00) |
1 (1.00) |
0.685 (1.00) |
0.848 (1.00) |
0.682 (1.00) |
0.724 (1.00) |
0.488 (1.00) |
||||
ARID1A | 12 (3%) | 405 |
0.656 (1.00) |
0.261 (1.00) |
0.969 (1.00) |
0.93 (1.00) |
0.308 (1.00) |
0.646 (1.00) |
0.116 (1.00) |
0.071 (1.00) |
0.283 (1.00) |
0.848 (1.00) |
||
ATM | 11 (3%) | 406 |
0.508 (1.00) |
0.476 (1.00) |
0.512 (1.00) |
0.707 (1.00) |
0.217 (1.00) |
0.616 (1.00) |
0.114 (1.00) |
0.526 (1.00) |
0.0782 (1.00) |
0.0454 (1.00) |
||
DPCR1 | 6 (1%) | 411 |
0.453 (1.00) |
0.515 (1.00) |
0.101 (1.00) |
0.495 (1.00) |
0.108 (1.00) |
0.00854 (1.00) |
0.675 (1.00) |
0.407 (1.00) |
0.654 (1.00) |
0.867 (1.00) |
||
FGFR3 | 4 (1%) | 413 |
0.572 (1.00) |
0.839 (1.00) |
0.95 (1.00) |
0.792 (1.00) |
0.828 (1.00) |
0.479 (1.00) |
0.821 (1.00) |
0.313 (1.00) |
||||
PTCH1 | 7 (2%) | 410 |
0.633 (1.00) |
0.0549 (1.00) |
0.281 (1.00) |
0.119 (1.00) |
0.877 (1.00) |
0.101 (1.00) |
0.796 (1.00) |
0.217 (1.00) |
||||
RBMX | 4 (1%) | 413 |
0.571 (1.00) |
0.619 (1.00) |
0.0985 (1.00) |
0.599 (1.00) |
0.407 (1.00) |
0.484 (1.00) |
0.251 (1.00) |
0.173 (1.00) |
||||
ARAP3 | 3 (1%) | 414 |
0.625 (1.00) |
1 (1.00) |
0.795 (1.00) |
0.784 (1.00) |
1 (1.00) |
0.796 (1.00) |
1 (1.00) |
|||||
GPR172B | 4 (1%) | 413 |
1 (1.00) |
0.0778 (1.00) |
1 (1.00) |
0.529 (1.00) |
1 (1.00) |
0.611 (1.00) |
0.433 (1.00) |
|||||
EGFR | 7 (2%) | 410 |
1 (1.00) |
0.683 (1.00) |
0.623 (1.00) |
0.378 (1.00) |
0.465 (1.00) |
0.888 (1.00) |
1 (1.00) |
0.752 (1.00) |
||||
IL1RAP | 4 (1%) | 413 |
1 (1.00) |
0.616 (1.00) |
0.294 (1.00) |
0.0739 (1.00) |
0.829 (1.00) |
0.814 (1.00) |
0.566 (1.00) |
0.823 (1.00) |
||||
BCL6 | 5 (1%) | 412 |
0.229 (1.00) |
0.616 (1.00) |
0.724 (1.00) |
0.144 (1.00) |
1 (1.00) |
0.804 (1.00) |
0.726 (1.00) |
0.855 (1.00) |
1 (1.00) |
1 (1.00) |
||
NFAT5 | 6 (1%) | 411 |
0.768 (1.00) |
0.877 (1.00) |
0.27 (1.00) |
0.718 (1.00) |
0.297 (1.00) |
0.431 (1.00) |
0.243 (1.00) |
1 (1.00) |
||||
LARP1 | 5 (1%) | 412 |
0.857 (1.00) |
0.438 (1.00) |
0.179 (1.00) |
0.719 (1.00) |
0.848 (1.00) |
0.864 (1.00) |
0.617 (1.00) |
0.27 (1.00) |
||||
KIAA1751 | 6 (1%) | 411 |
0.675 (1.00) |
0.639 (1.00) |
0.532 (1.00) |
0.0535 (1.00) |
0.405 (1.00) |
0.93 (1.00) |
0.496 (1.00) |
0.169 (1.00) |
0.792 (1.00) |
0.161 (1.00) |
||
INSRR | 4 (1%) | 413 |
0.571 (1.00) |
0.12 (1.00) |
0.348 (1.00) |
0.685 (1.00) |
0.406 (1.00) |
0.239 (1.00) |
0.46 (1.00) |
0.249 (1.00) |
P value = 1 (Fisher's exact test), Q value = 1
Table S1. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 21 | 3 |
SETD2 MUTATED | 2 | 2 | 0 |
SETD2 WILD-TYPE | 20 | 19 | 3 |
P value = 0.499 (Fisher's exact test), Q value = 1
Table S2. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 10 | 3 | 10 | 10 | 8 | 1 |
SETD2 MUTATED | 1 | 2 | 0 | 0 | 1 | 0 | 0 |
SETD2 WILD-TYPE | 3 | 8 | 3 | 10 | 9 | 8 | 1 |
P value = 0.668 (Fisher's exact test), Q value = 1
Table S3. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
SETD2 MUTATED | 17 | 10 | 17 |
SETD2 WILD-TYPE | 151 | 101 | 119 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0027
Table S4. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
SETD2 MUTATED | 6 | 0 | 22 |
SETD2 WILD-TYPE | 90 | 53 | 72 |
Figure S1. Get High-res Image Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D1V4.png)
P value = 0.639 (Fisher's exact test), Q value = 1
Table S5. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
SETD2 MUTATED | 14 | 6 | 7 | 5 | 3 | 6 |
SETD2 WILD-TYPE | 74 | 69 | 67 | 54 | 35 | 46 |
P value = 0.161 (Fisher's exact test), Q value = 1
Table S6. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
SETD2 MUTATED | 11 | 13 | 17 |
SETD2 WILD-TYPE | 71 | 162 | 112 |
P value = 0.464 (Fisher's exact test), Q value = 1
Table S7. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
SETD2 MUTATED | 15 | 9 | 20 |
SETD2 WILD-TYPE | 162 | 64 | 145 |
P value = 0.08 (Fisher's exact test), Q value = 1
Table S8. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
SETD2 MUTATED | 18 | 10 | 14 | 2 | 0 | 0 |
SETD2 WILD-TYPE | 90 | 134 | 99 | 20 | 24 | 4 |
P value = 0.778 (Fisher's exact test), Q value = 1
Table S9. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
SETD2 MUTATED | 8 | 19 | 15 |
SETD2 WILD-TYPE | 89 | 159 | 117 |
P value = 0.762 (Fisher's exact test), Q value = 1
Table S10. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
SETD2 MUTATED | 13 | 23 | 6 |
SETD2 WILD-TYPE | 117 | 180 | 68 |
P value = 0.621 (Fisher's exact test), Q value = 1
Table S11. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
SETD2 MUTATED | 3 | 10 | 9 |
SETD2 WILD-TYPE | 38 | 64 | 59 |
P value = 0.0592 (Fisher's exact test), Q value = 1
Table S12. Gene #1: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
SETD2 MUTATED | 3 | 12 | 7 |
SETD2 WILD-TYPE | 61 | 67 | 33 |
P value = 0.0315 (Fisher's exact test), Q value = 1
Table S13. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 21 | 3 |
BAP1 MUTATED | 1 | 7 | 0 |
BAP1 WILD-TYPE | 21 | 14 | 3 |
Figure S2. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 0.00055 (Fisher's exact test), Q value = 0.14
Table S14. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 10 | 3 | 10 | 10 | 8 | 1 |
BAP1 MUTATED | 0 | 0 | 0 | 7 | 1 | 0 | 0 |
BAP1 WILD-TYPE | 4 | 10 | 3 | 3 | 9 | 8 | 1 |
Figure S3. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D2V2.png)
P value = 0.011 (Fisher's exact test), Q value = 1
Table S15. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
BAP1 MUTATED | 10 | 9 | 22 |
BAP1 WILD-TYPE | 158 | 102 | 114 |
Figure S4. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D2V3.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.031
Table S16. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
BAP1 MUTATED | 1 | 6 | 16 |
BAP1 WILD-TYPE | 95 | 47 | 78 |
Figure S5. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D2V4.png)
P value = 0.00085 (Fisher's exact test), Q value = 0.22
Table S17. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
BAP1 MUTATED | 2 | 11 | 9 | 1 | 2 | 10 |
BAP1 WILD-TYPE | 86 | 64 | 65 | 58 | 36 | 42 |
Figure S6. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D2V5.png)
P value = 0.066 (Fisher's exact test), Q value = 1
Table S18. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
BAP1 MUTATED | 6 | 11 | 18 |
BAP1 WILD-TYPE | 76 | 164 | 111 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
Table S19. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
BAP1 MUTATED | 5 | 8 | 28 |
BAP1 WILD-TYPE | 172 | 65 | 137 |
Figure S7. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D2V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0027
Table S20. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
BAP1 MUTATED | 5 | 4 | 17 | 0 | 15 | 0 |
BAP1 WILD-TYPE | 103 | 140 | 96 | 22 | 9 | 4 |
Figure S8. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.018
Table S21. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
BAP1 MUTATED | 9 | 7 | 25 |
BAP1 WILD-TYPE | 88 | 171 | 107 |
Figure S9. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D2V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.0027
Table S22. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
BAP1 MUTATED | 19 | 6 | 16 |
BAP1 WILD-TYPE | 111 | 197 | 58 |
Figure S10. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D2V10.png)
P value = 0.351 (Fisher's exact test), Q value = 1
Table S23. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
BAP1 MUTATED | 3 | 3 | 7 |
BAP1 WILD-TYPE | 38 | 71 | 61 |
P value = 0.0371 (Fisher's exact test), Q value = 1
Table S24. Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
BAP1 MUTATED | 5 | 2 | 6 |
BAP1 WILD-TYPE | 59 | 77 | 34 |
Figure S11. Get High-res Image Gene #2: 'BAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V12.png)
P value = 0.107 (Fisher's exact test), Q value = 1
Table S25. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 21 | 3 |
PTEN MUTATED | 0 | 4 | 0 |
PTEN WILD-TYPE | 22 | 17 | 3 |
P value = 0.0319 (Fisher's exact test), Q value = 1
Table S26. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 10 | 3 | 10 | 10 | 8 | 1 |
PTEN MUTATED | 0 | 4 | 0 | 0 | 0 | 0 | 0 |
PTEN WILD-TYPE | 4 | 6 | 3 | 10 | 10 | 8 | 1 |
Figure S12. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D3V2.png)
P value = 0.212 (Fisher's exact test), Q value = 1
Table S27. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
PTEN MUTATED | 5 | 3 | 9 |
PTEN WILD-TYPE | 163 | 108 | 127 |
P value = 0.168 (Fisher's exact test), Q value = 1
Table S28. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
PTEN MUTATED | 1 | 3 | 5 |
PTEN WILD-TYPE | 95 | 50 | 89 |
P value = 0.259 (Fisher's exact test), Q value = 1
Table S29. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
PTEN MUTATED | 2 | 6 | 2 | 2 | 1 | 5 |
PTEN WILD-TYPE | 86 | 69 | 72 | 57 | 37 | 47 |
P value = 0.156 (Fisher's exact test), Q value = 1
Table S30. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
PTEN MUTATED | 1 | 8 | 9 |
PTEN WILD-TYPE | 81 | 167 | 120 |
P value = 0.00098 (Fisher's exact test), Q value = 0.25
Table S31. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
PTEN MUTATED | 1 | 4 | 13 |
PTEN WILD-TYPE | 176 | 69 | 152 |
Figure S13. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D3V7.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.28
Table S32. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
PTEN MUTATED | 5 | 0 | 12 | 1 | 0 | 0 |
PTEN WILD-TYPE | 103 | 144 | 101 | 21 | 24 | 4 |
Figure S14. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00867 (Fisher's exact test), Q value = 1
Table S33. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
PTEN MUTATED | 7 | 2 | 9 |
PTEN WILD-TYPE | 90 | 176 | 123 |
Figure S15. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D3V9.png)
P value = 0.041 (Fisher's exact test), Q value = 1
Table S34. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
PTEN MUTATED | 9 | 4 | 5 |
PTEN WILD-TYPE | 121 | 199 | 69 |
Figure S16. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D3V10.png)
P value = 0.0157 (Fisher's exact test), Q value = 1
Table S35. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
PTEN MUTATED | 0 | 0 | 5 |
PTEN WILD-TYPE | 41 | 74 | 63 |
Figure S17. Get High-res Image Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D3V11.png)
P value = 0.0552 (Fisher's exact test), Q value = 1
Table S36. Gene #3: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
PTEN MUTATED | 4 | 0 | 1 |
PTEN WILD-TYPE | 60 | 79 | 39 |
P value = 0.153 (Fisher's exact test), Q value = 1
Table S37. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 21 | 3 |
PBRM1 MUTATED | 10 | 4 | 1 |
PBRM1 WILD-TYPE | 12 | 17 | 2 |
P value = 0.059 (Fisher's exact test), Q value = 1
Table S38. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 10 | 3 | 10 | 10 | 8 | 1 |
PBRM1 MUTATED | 2 | 4 | 0 | 0 | 4 | 4 | 1 |
PBRM1 WILD-TYPE | 2 | 6 | 3 | 10 | 6 | 4 | 0 |
P value = 0.138 (Fisher's exact test), Q value = 1
Table S39. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
PBRM1 MUTATED | 60 | 28 | 48 |
PBRM1 WILD-TYPE | 108 | 83 | 88 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0079
Table S40. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
PBRM1 MUTATED | 42 | 6 | 42 |
PBRM1 WILD-TYPE | 54 | 47 | 52 |
Figure S18. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D4V4.png)
P value = 0.00071 (Fisher's exact test), Q value = 0.18
Table S41. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
PBRM1 MUTATED | 46 | 16 | 22 | 17 | 9 | 16 |
PBRM1 WILD-TYPE | 42 | 59 | 52 | 42 | 29 | 36 |
Figure S19. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D4V5.png)
P value = 0.253 (Fisher's exact test), Q value = 1
Table S42. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
PBRM1 MUTATED | 33 | 54 | 39 |
PBRM1 WILD-TYPE | 49 | 121 | 90 |
P value = 0.00642 (Fisher's exact test), Q value = 1
Table S43. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
PBRM1 MUTATED | 71 | 15 | 49 |
PBRM1 WILD-TYPE | 106 | 58 | 116 |
Figure S20. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D4V7.png)
P value = 0.027 (Fisher's exact test), Q value = 1
Table S44. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
PBRM1 MUTATED | 40 | 57 | 29 | 5 | 3 | 1 |
PBRM1 WILD-TYPE | 68 | 87 | 84 | 17 | 21 | 3 |
Figure S21. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 0.00379 (Fisher's exact test), Q value = 0.95
Table S45. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
PBRM1 MUTATED | 22 | 73 | 37 |
PBRM1 WILD-TYPE | 75 | 105 | 95 |
Figure S22. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D4V9.png)
P value = 0.0599 (Fisher's exact test), Q value = 1
Table S46. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
PBRM1 MUTATED | 34 | 77 | 21 |
PBRM1 WILD-TYPE | 96 | 126 | 53 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0027
Table S47. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
PBRM1 MUTATED | 2 | 37 | 22 |
PBRM1 WILD-TYPE | 39 | 37 | 46 |
Figure S23. Get High-res Image Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D4V11.png)
P value = 0.0545 (Fisher's exact test), Q value = 1
Table S48. Gene #4: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
PBRM1 MUTATED | 14 | 31 | 16 |
PBRM1 WILD-TYPE | 50 | 48 | 24 |
P value = 0.188 (Fisher's exact test), Q value = 1
Table S49. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
KDM5C MUTATED | 8 | 5 | 13 |
KDM5C WILD-TYPE | 160 | 106 | 123 |
P value = 0.0891 (Fisher's exact test), Q value = 1
Table S50. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
KDM5C MUTATED | 4 | 2 | 11 |
KDM5C WILD-TYPE | 92 | 51 | 83 |
P value = 0.436 (Fisher's exact test), Q value = 1
Table S51. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
KDM5C MUTATED | 5 | 3 | 6 | 2 | 1 | 6 |
KDM5C WILD-TYPE | 83 | 72 | 68 | 57 | 37 | 46 |
P value = 0.756 (Fisher's exact test), Q value = 1
Table S52. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
KDM5C MUTATED | 6 | 9 | 8 |
KDM5C WILD-TYPE | 76 | 166 | 121 |
P value = 0.109 (Fisher's exact test), Q value = 1
Table S53. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
KDM5C MUTATED | 8 | 2 | 15 |
KDM5C WILD-TYPE | 169 | 71 | 150 |
P value = 0.00069 (Fisher's exact test), Q value = 0.18
Table S54. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
KDM5C MUTATED | 15 | 1 | 8 | 1 | 0 | 0 |
KDM5C WILD-TYPE | 93 | 143 | 105 | 21 | 24 | 4 |
Figure S24. Get High-res Image Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 0.00426 (Fisher's exact test), Q value = 1
Table S55. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
KDM5C MUTATED | 2 | 8 | 16 |
KDM5C WILD-TYPE | 95 | 170 | 116 |
Figure S25. Get High-res Image Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D5V9.png)
P value = 0.635 (Fisher's exact test), Q value = 1
Table S56. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
KDM5C MUTATED | 9 | 11 | 6 |
KDM5C WILD-TYPE | 121 | 192 | 68 |
P value = 0.374 (Fisher's exact test), Q value = 1
Table S57. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
KDM5C MUTATED | 0 | 4 | 4 |
KDM5C WILD-TYPE | 41 | 70 | 64 |
P value = 0.137 (Fisher's exact test), Q value = 1
Table S58. Gene #5: 'KDM5C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
KDM5C MUTATED | 4 | 1 | 3 |
KDM5C WILD-TYPE | 60 | 78 | 37 |
P value = 0.113 (Fisher's exact test), Q value = 1
Table S59. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 21 | 3 |
VHL MUTATED | 13 | 6 | 1 |
VHL WILD-TYPE | 9 | 15 | 2 |
P value = 0.226 (Fisher's exact test), Q value = 1
Table S60. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 10 | 3 | 10 | 10 | 8 | 1 |
VHL MUTATED | 2 | 2 | 0 | 4 | 6 | 5 | 1 |
VHL WILD-TYPE | 2 | 8 | 3 | 6 | 4 | 3 | 0 |
P value = 0.114 (Fisher's exact test), Q value = 1
Table S61. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
VHL MUTATED | 68 | 52 | 46 |
VHL WILD-TYPE | 100 | 59 | 90 |
P value = 0.748 (Fisher's exact test), Q value = 1
Table S62. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
VHL MUTATED | 46 | 23 | 40 |
VHL WILD-TYPE | 50 | 30 | 54 |
P value = 0.774 (Fisher's exact test), Q value = 1
Table S63. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
VHL MUTATED | 40 | 30 | 28 | 20 | 17 | 20 |
VHL WILD-TYPE | 48 | 45 | 46 | 39 | 21 | 32 |
P value = 0.393 (Fisher's exact test), Q value = 1
Table S64. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
VHL MUTATED | 33 | 76 | 46 |
VHL WILD-TYPE | 49 | 99 | 83 |
P value = 0.014 (Fisher's exact test), Q value = 1
Table S65. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
VHL MUTATED | 85 | 23 | 58 |
VHL WILD-TYPE | 92 | 50 | 107 |
Figure S26. Get High-res Image Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D6V7.png)
P value = 0.513 (Fisher's exact test), Q value = 1
Table S66. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
VHL MUTATED | 46 | 64 | 41 | 6 | 8 | 1 |
VHL WILD-TYPE | 62 | 80 | 72 | 16 | 16 | 3 |
P value = 0.161 (Fisher's exact test), Q value = 1
Table S67. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
VHL MUTATED | 40 | 78 | 44 |
VHL WILD-TYPE | 57 | 100 | 88 |
P value = 0.00267 (Fisher's exact test), Q value = 0.67
Table S68. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
VHL MUTATED | 41 | 98 | 23 |
VHL WILD-TYPE | 89 | 105 | 51 |
Figure S27. Get High-res Image Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 0.672 (Fisher's exact test), Q value = 1
Table S69. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
VHL MUTATED | 18 | 36 | 28 |
VHL WILD-TYPE | 23 | 38 | 40 |
P value = 0.159 (Fisher's exact test), Q value = 1
Table S70. Gene #6: 'VHL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
VHL MUTATED | 23 | 41 | 18 |
VHL WILD-TYPE | 41 | 38 | 22 |
P value = 0.0014 (Fisher's exact test), Q value = 0.35
Table S71. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
FAM200A MUTATED | 0 | 5 | 0 |
FAM200A WILD-TYPE | 168 | 106 | 136 |
Figure S28. Get High-res Image Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D7V3.png)
P value = 0.031 (Fisher's exact test), Q value = 1
Table S72. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
FAM200A MUTATED | 0 | 1 | 0 | 0 | 2 | 0 |
FAM200A WILD-TYPE | 88 | 74 | 74 | 59 | 36 | 52 |
Figure S29. Get High-res Image Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D7V5.png)
P value = 0.318 (Fisher's exact test), Q value = 1
Table S73. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
FAM200A MUTATED | 0 | 3 | 0 |
FAM200A WILD-TYPE | 82 | 172 | 129 |
P value = 0.159 (Fisher's exact test), Q value = 1
Table S74. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
FAM200A MUTATED | 4 | 1 | 0 |
FAM200A WILD-TYPE | 173 | 72 | 165 |
P value = 0.412 (Fisher's exact test), Q value = 1
Table S75. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
FAM200A MUTATED | 1 | 4 | 0 | 0 | 0 | 0 |
FAM200A WILD-TYPE | 107 | 140 | 113 | 22 | 24 | 4 |
P value = 0.207 (Fisher's exact test), Q value = 1
Table S76. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
FAM200A MUTATED | 1 | 4 | 0 |
FAM200A WILD-TYPE | 96 | 174 | 132 |
P value = 0.586 (Fisher's exact test), Q value = 1
Table S77. Gene #7: 'FAM200A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
FAM200A MUTATED | 1 | 4 | 0 |
FAM200A WILD-TYPE | 129 | 199 | 74 |
P value = 0.767 (Fisher's exact test), Q value = 1
Table S78. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
TP53 MUTATED | 3 | 2 | 4 |
TP53 WILD-TYPE | 165 | 109 | 132 |
P value = 0.511 (Fisher's exact test), Q value = 1
Table S79. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
TP53 MUTATED | 1 | 2 | 3 |
TP53 WILD-TYPE | 95 | 51 | 91 |
P value = 0.515 (Fisher's exact test), Q value = 1
Table S80. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
TP53 MUTATED | 0 | 2 | 2 | 1 | 1 | 2 |
TP53 WILD-TYPE | 88 | 73 | 72 | 58 | 37 | 50 |
P value = 0.648 (Fisher's exact test), Q value = 1
Table S81. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
TP53 MUTATED | 1 | 3 | 4 |
TP53 WILD-TYPE | 81 | 172 | 125 |
P value = 0.456 (Fisher's exact test), Q value = 1
Table S82. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
TP53 MUTATED | 2 | 2 | 5 |
TP53 WILD-TYPE | 175 | 71 | 160 |
P value = 0.311 (Fisher's exact test), Q value = 1
Table S83. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
TP53 MUTATED | 1 | 2 | 6 | 0 | 0 | 0 |
TP53 WILD-TYPE | 107 | 142 | 107 | 22 | 24 | 4 |
P value = 0.464 (Fisher's exact test), Q value = 1
Table S84. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
TP53 MUTATED | 3 | 2 | 4 |
TP53 WILD-TYPE | 94 | 176 | 128 |
P value = 0.173 (Fisher's exact test), Q value = 1
Table S85. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
TP53 MUTATED | 5 | 2 | 2 |
TP53 WILD-TYPE | 125 | 201 | 72 |
P value = 0.227 (Fisher's exact test), Q value = 1
Table S86. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
TP53 MUTATED | 3 | 2 | 1 |
TP53 WILD-TYPE | 38 | 72 | 67 |
P value = 0.271 (Fisher's exact test), Q value = 1
Table S87. Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
TP53 MUTATED | 4 | 2 | 0 |
TP53 WILD-TYPE | 60 | 77 | 40 |
P value = 0.858 (Fisher's exact test), Q value = 1
Table S88. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
NEFH MUTATED | 3 | 1 | 1 |
NEFH WILD-TYPE | 165 | 110 | 135 |
P value = 0.54 (Fisher's exact test), Q value = 1
Table S89. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
NEFH MUTATED | 3 | 0 | 1 |
NEFH WILD-TYPE | 93 | 53 | 93 |
P value = 0.978 (Fisher's exact test), Q value = 1
Table S90. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
NEFH MUTATED | 2 | 1 | 1 | 1 | 0 | 0 |
NEFH WILD-TYPE | 86 | 74 | 73 | 58 | 38 | 52 |
P value = 0.116 (Fisher's exact test), Q value = 1
Table S91. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
NEFH MUTATED | 0 | 1 | 4 |
NEFH WILD-TYPE | 82 | 174 | 125 |
P value = 0.0124 (Fisher's exact test), Q value = 1
Table S92. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
NEFH MUTATED | 0 | 3 | 2 |
NEFH WILD-TYPE | 177 | 70 | 163 |
Figure S30. Get High-res Image Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D9V7.png)
P value = 0.0162 (Fisher's exact test), Q value = 1
Table S93. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
NEFH MUTATED | 1 | 0 | 1 | 2 | 1 | 0 |
NEFH WILD-TYPE | 107 | 144 | 112 | 20 | 23 | 4 |
Figure S31. Get High-res Image Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 0.618 (Fisher's exact test), Q value = 1
Table S94. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
NEFH MUTATED | 0 | 3 | 2 |
NEFH WILD-TYPE | 97 | 175 | 130 |
P value = 0.405 (Fisher's exact test), Q value = 1
Table S95. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
NEFH MUTATED | 1 | 2 | 2 |
NEFH WILD-TYPE | 129 | 201 | 72 |
P value = 0.683 (Fisher's exact test), Q value = 1
Table S96. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
NEFH MUTATED | 0 | 2 | 2 |
NEFH WILD-TYPE | 41 | 72 | 66 |
P value = 1 (Fisher's exact test), Q value = 1
Table S97. Gene #9: 'NEFH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
NEFH MUTATED | 1 | 2 | 1 |
NEFH WILD-TYPE | 63 | 77 | 39 |
P value = 0.183 (Fisher's exact test), Q value = 1
Table S98. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
CCDC120 MUTATED | 0 | 2 | 2 |
CCDC120 WILD-TYPE | 168 | 109 | 134 |
P value = 0.564 (Fisher's exact test), Q value = 1
Table S99. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
CCDC120 MUTATED | 1 | 0 | 2 | 0 | 0 | 0 |
CCDC120 WILD-TYPE | 87 | 75 | 72 | 59 | 38 | 52 |
P value = 0.794 (Fisher's exact test), Q value = 1
Table S100. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
CCDC120 MUTATED | 1 | 1 | 1 |
CCDC120 WILD-TYPE | 81 | 174 | 128 |
P value = 0.675 (Fisher's exact test), Q value = 1
Table S101. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
CCDC120 MUTATED | 1 | 1 | 2 |
CCDC120 WILD-TYPE | 176 | 72 | 163 |
P value = 0.816 (Fisher's exact test), Q value = 1
Table S102. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
CCDC120 MUTATED | 2 | 1 | 1 | 0 | 0 | 0 |
CCDC120 WILD-TYPE | 106 | 143 | 112 | 22 | 24 | 4 |
P value = 0.822 (Fisher's exact test), Q value = 1
Table S103. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
CCDC120 MUTATED | 1 | 1 | 2 |
CCDC120 WILD-TYPE | 96 | 177 | 130 |
P value = 1 (Fisher's exact test), Q value = 1
Table S104. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
CCDC120 MUTATED | 1 | 2 | 1 |
CCDC120 WILD-TYPE | 129 | 201 | 73 |
P value = 0.613 (Fisher's exact test), Q value = 1
Table S105. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
CCDC120 MUTATED | 0 | 1 | 2 |
CCDC120 WILD-TYPE | 41 | 73 | 66 |
P value = 0.163 (Fisher's exact test), Q value = 1
Table S106. Gene #10: 'CCDC120 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
CCDC120 MUTATED | 0 | 1 | 2 |
CCDC120 WILD-TYPE | 64 | 78 | 38 |
P value = 0.565 (Fisher's exact test), Q value = 1
Table S107. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
MTOR MUTATED | 8 | 5 | 10 |
MTOR WILD-TYPE | 160 | 106 | 126 |
P value = 0.154 (Fisher's exact test), Q value = 1
Table S108. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
MTOR MUTATED | 5 | 2 | 11 |
MTOR WILD-TYPE | 91 | 51 | 83 |
P value = 0.00047 (Fisher's exact test), Q value = 0.12
Table S109. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
MTOR MUTATED | 4 | 1 | 8 | 0 | 0 | 8 |
MTOR WILD-TYPE | 84 | 74 | 66 | 59 | 38 | 44 |
Figure S32. Get High-res Image Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D11V5.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.2
Table S110. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
MTOR MUTATED | 6 | 2 | 13 |
MTOR WILD-TYPE | 76 | 173 | 116 |
Figure S33. Get High-res Image Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D11V6.png)
P value = 0.657 (Fisher's exact test), Q value = 1
Table S111. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
MTOR MUTATED | 8 | 5 | 10 |
MTOR WILD-TYPE | 169 | 68 | 155 |
P value = 0.447 (Fisher's exact test), Q value = 1
Table S112. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
MTOR MUTATED | 5 | 7 | 7 | 2 | 1 | 1 |
MTOR WILD-TYPE | 103 | 137 | 106 | 20 | 23 | 3 |
P value = 0.345 (Fisher's exact test), Q value = 1
Table S113. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
MTOR MUTATED | 6 | 7 | 10 |
MTOR WILD-TYPE | 91 | 171 | 122 |
P value = 0.0326 (Fisher's exact test), Q value = 1
Table S114. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
MTOR MUTATED | 9 | 6 | 8 |
MTOR WILD-TYPE | 121 | 197 | 66 |
Figure S34. Get High-res Image Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 0.0647 (Fisher's exact test), Q value = 1
Table S115. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
MTOR MUTATED | 1 | 3 | 9 |
MTOR WILD-TYPE | 40 | 71 | 59 |
P value = 0.0033 (Fisher's exact test), Q value = 0.83
Table S116. Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
MTOR MUTATED | 5 | 1 | 7 |
MTOR WILD-TYPE | 59 | 78 | 33 |
Figure S35. Get High-res Image Gene #11: 'MTOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V12.png)
P value = 0.684 (Fisher's exact test), Q value = 1
Table S117. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
GUSB MUTATED | 1 | 2 | 1 |
GUSB WILD-TYPE | 167 | 109 | 135 |
P value = 0.449 (Fisher's exact test), Q value = 1
Table S118. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
GUSB MUTATED | 0 | 2 | 1 | 0 | 0 | 0 |
GUSB WILD-TYPE | 88 | 73 | 73 | 59 | 38 | 52 |
P value = 0.446 (Fisher's exact test), Q value = 1
Table S119. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
GUSB MUTATED | 1 | 2 | 0 |
GUSB WILD-TYPE | 81 | 173 | 129 |
P value = 0.185 (Fisher's exact test), Q value = 1
Table S120. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
GUSB MUTATED | 0 | 1 | 3 |
GUSB WILD-TYPE | 177 | 72 | 162 |
P value = 0.195 (Fisher's exact test), Q value = 1
Table S121. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
GUSB MUTATED | 1 | 0 | 2 | 0 | 1 | 0 |
GUSB WILD-TYPE | 107 | 144 | 111 | 22 | 23 | 4 |
P value = 0.459 (Fisher's exact test), Q value = 1
Table S122. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
GUSB MUTATED | 2 | 1 | 1 |
GUSB WILD-TYPE | 95 | 177 | 131 |
P value = 0.516 (Fisher's exact test), Q value = 1
Table S123. Gene #12: 'GUSB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
GUSB MUTATED | 2 | 1 | 1 |
GUSB WILD-TYPE | 128 | 202 | 73 |
P value = 0.294 (Fisher's exact test), Q value = 1
Table S124. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
PIK3CA MUTATED | 7 | 1 | 4 |
PIK3CA WILD-TYPE | 161 | 110 | 132 |
P value = 0.655 (Fisher's exact test), Q value = 1
Table S125. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
PIK3CA MUTATED | 3 | 0 | 3 |
PIK3CA WILD-TYPE | 93 | 53 | 91 |
P value = 0.889 (Fisher's exact test), Q value = 1
Table S126. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
PIK3CA MUTATED | 2 | 4 | 2 | 1 | 1 | 1 |
PIK3CA WILD-TYPE | 86 | 71 | 72 | 58 | 37 | 51 |
P value = 0.73 (Fisher's exact test), Q value = 1
Table S127. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
PIK3CA MUTATED | 2 | 4 | 5 |
PIK3CA WILD-TYPE | 80 | 171 | 124 |
P value = 0.287 (Fisher's exact test), Q value = 1
Table S128. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
PIK3CA MUTATED | 6 | 0 | 6 |
PIK3CA WILD-TYPE | 171 | 73 | 159 |
P value = 0.537 (Fisher's exact test), Q value = 1
Table S129. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
PIK3CA MUTATED | 1 | 5 | 5 | 0 | 1 | 0 |
PIK3CA WILD-TYPE | 107 | 139 | 108 | 22 | 23 | 4 |
P value = 0.751 (Fisher's exact test), Q value = 1
Table S130. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
PIK3CA MUTATED | 3 | 4 | 5 |
PIK3CA WILD-TYPE | 94 | 174 | 127 |
P value = 0.8 (Fisher's exact test), Q value = 1
Table S131. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
PIK3CA MUTATED | 5 | 5 | 2 |
PIK3CA WILD-TYPE | 125 | 198 | 72 |
P value = 0.612 (Fisher's exact test), Q value = 1
Table S132. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
PIK3CA MUTATED | 0 | 1 | 2 |
PIK3CA WILD-TYPE | 41 | 73 | 66 |
P value = 0.605 (Fisher's exact test), Q value = 1
Table S133. Gene #13: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
PIK3CA MUTATED | 2 | 1 | 0 |
PIK3CA WILD-TYPE | 62 | 78 | 40 |
P value = 0.227 (Fisher's exact test), Q value = 1
Table S134. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
PCK1 MUTATED | 4 | 0 | 1 |
PCK1 WILD-TYPE | 164 | 111 | 135 |
P value = 0.615 (Fisher's exact test), Q value = 1
Table S135. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
PCK1 MUTATED | 1 | 0 | 2 |
PCK1 WILD-TYPE | 95 | 53 | 92 |
P value = 1 (Fisher's exact test), Q value = 1
Table S136. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
PCK1 MUTATED | 1 | 1 | 1 | 1 | 0 | 0 |
PCK1 WILD-TYPE | 87 | 74 | 73 | 58 | 38 | 52 |
P value = 0.685 (Fisher's exact test), Q value = 1
Table S137. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
PCK1 MUTATED | 1 | 1 | 2 |
PCK1 WILD-TYPE | 81 | 174 | 127 |
P value = 0.848 (Fisher's exact test), Q value = 1
Table S138. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
PCK1 MUTATED | 3 | 0 | 2 |
PCK1 WILD-TYPE | 174 | 73 | 163 |
P value = 0.682 (Fisher's exact test), Q value = 1
Table S139. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
PCK1 MUTATED | 0 | 3 | 2 | 0 | 0 | 0 |
PCK1 WILD-TYPE | 108 | 141 | 111 | 22 | 24 | 4 |
P value = 0.724 (Fisher's exact test), Q value = 1
Table S140. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
PCK1 MUTATED | 2 | 2 | 1 |
PCK1 WILD-TYPE | 95 | 176 | 131 |
P value = 0.488 (Fisher's exact test), Q value = 1
Table S141. Gene #14: 'PCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
PCK1 MUTATED | 3 | 2 | 0 |
PCK1 WILD-TYPE | 127 | 201 | 74 |
P value = 0.656 (Fisher's exact test), Q value = 1
Table S142. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
ARID1A MUTATED | 5 | 2 | 5 |
ARID1A WILD-TYPE | 163 | 109 | 131 |
P value = 0.261 (Fisher's exact test), Q value = 1
Table S143. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
ARID1A MUTATED | 5 | 1 | 1 |
ARID1A WILD-TYPE | 91 | 52 | 93 |
P value = 0.969 (Fisher's exact test), Q value = 1
Table S144. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
ARID1A MUTATED | 3 | 2 | 2 | 3 | 1 | 1 |
ARID1A WILD-TYPE | 85 | 73 | 72 | 56 | 37 | 51 |
P value = 0.93 (Fisher's exact test), Q value = 1
Table S145. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
ARID1A MUTATED | 3 | 5 | 4 |
ARID1A WILD-TYPE | 79 | 170 | 125 |
P value = 0.308 (Fisher's exact test), Q value = 1
Table S146. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
ARID1A MUTATED | 8 | 1 | 3 |
ARID1A WILD-TYPE | 169 | 72 | 162 |
P value = 0.646 (Fisher's exact test), Q value = 1
Table S147. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
ARID1A MUTATED | 2 | 7 | 3 | 0 | 0 | 0 |
ARID1A WILD-TYPE | 106 | 137 | 110 | 22 | 24 | 4 |
P value = 0.116 (Fisher's exact test), Q value = 1
Table S148. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
ARID1A MUTATED | 1 | 9 | 2 |
ARID1A WILD-TYPE | 96 | 169 | 130 |
P value = 0.071 (Fisher's exact test), Q value = 1
Table S149. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
ARID1A MUTATED | 1 | 10 | 1 |
ARID1A WILD-TYPE | 129 | 193 | 73 |
P value = 0.283 (Fisher's exact test), Q value = 1
Table S150. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
ARID1A MUTATED | 0 | 4 | 1 |
ARID1A WILD-TYPE | 41 | 70 | 67 |
P value = 0.848 (Fisher's exact test), Q value = 1
Table S151. Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
ARID1A MUTATED | 1 | 3 | 1 |
ARID1A WILD-TYPE | 63 | 76 | 39 |
P value = 0.508 (Fisher's exact test), Q value = 1
Table S152. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
ATM MUTATED | 5 | 4 | 2 |
ATM WILD-TYPE | 163 | 107 | 134 |
P value = 0.476 (Fisher's exact test), Q value = 1
Table S153. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
ATM MUTATED | 5 | 1 | 2 |
ATM WILD-TYPE | 91 | 52 | 92 |
P value = 0.512 (Fisher's exact test), Q value = 1
Table S154. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
ATM MUTATED | 3 | 2 | 0 | 3 | 1 | 1 |
ATM WILD-TYPE | 85 | 73 | 74 | 56 | 37 | 51 |
P value = 0.707 (Fisher's exact test), Q value = 1
Table S155. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
ATM MUTATED | 1 | 6 | 3 |
ATM WILD-TYPE | 81 | 169 | 126 |
P value = 0.217 (Fisher's exact test), Q value = 1
Table S156. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
ATM MUTATED | 7 | 0 | 4 |
ATM WILD-TYPE | 170 | 73 | 161 |
P value = 0.616 (Fisher's exact test), Q value = 1
Table S157. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
ATM MUTATED | 2 | 7 | 2 | 0 | 0 | 0 |
ATM WILD-TYPE | 106 | 137 | 111 | 22 | 24 | 4 |
P value = 0.114 (Fisher's exact test), Q value = 1
Table S158. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
ATM MUTATED | 0 | 7 | 3 |
ATM WILD-TYPE | 97 | 171 | 129 |
P value = 0.526 (Fisher's exact test), Q value = 1
Table S159. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
ATM MUTATED | 2 | 5 | 3 |
ATM WILD-TYPE | 128 | 198 | 71 |
P value = 0.0782 (Fisher's exact test), Q value = 1
Table S160. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
ATM MUTATED | 0 | 4 | 0 |
ATM WILD-TYPE | 41 | 70 | 68 |
P value = 0.0454 (Fisher's exact test), Q value = 1
Table S161. Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
ATM MUTATED | 0 | 1 | 3 |
ATM WILD-TYPE | 64 | 78 | 37 |
Figure S36. Get High-res Image Gene #16: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V12.png)
P value = 0.453 (Fisher's exact test), Q value = 1
Table S162. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
DPCR1 MUTATED | 1 | 2 | 3 |
DPCR1 WILD-TYPE | 167 | 109 | 133 |
P value = 0.515 (Fisher's exact test), Q value = 1
Table S163. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
DPCR1 MUTATED | 1 | 2 | 3 |
DPCR1 WILD-TYPE | 95 | 51 | 91 |
P value = 0.101 (Fisher's exact test), Q value = 1
Table S164. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
DPCR1 MUTATED | 0 | 1 | 1 | 0 | 2 | 2 |
DPCR1 WILD-TYPE | 88 | 74 | 73 | 59 | 36 | 50 |
P value = 0.495 (Fisher's exact test), Q value = 1
Table S165. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
DPCR1 MUTATED | 0 | 4 | 2 |
DPCR1 WILD-TYPE | 82 | 171 | 127 |
P value = 0.108 (Fisher's exact test), Q value = 1
Table S166. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
DPCR1 MUTATED | 1 | 3 | 2 |
DPCR1 WILD-TYPE | 176 | 70 | 163 |
P value = 0.00854 (Fisher's exact test), Q value = 1
Table S167. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
DPCR1 MUTATED | 1 | 0 | 2 | 1 | 1 | 1 |
DPCR1 WILD-TYPE | 107 | 144 | 111 | 21 | 23 | 3 |
Figure S37. Get High-res Image Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D17V8.png)
P value = 0.675 (Fisher's exact test), Q value = 1
Table S168. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
DPCR1 MUTATED | 2 | 3 | 1 |
DPCR1 WILD-TYPE | 95 | 175 | 131 |
P value = 0.407 (Fisher's exact test), Q value = 1
Table S169. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
DPCR1 MUTATED | 2 | 2 | 2 |
DPCR1 WILD-TYPE | 128 | 201 | 72 |
P value = 0.654 (Fisher's exact test), Q value = 1
Table S170. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
DPCR1 MUTATED | 2 | 3 | 1 |
DPCR1 WILD-TYPE | 39 | 71 | 67 |
P value = 0.867 (Fisher's exact test), Q value = 1
Table S171. Gene #17: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
DPCR1 MUTATED | 3 | 2 | 1 |
DPCR1 WILD-TYPE | 61 | 77 | 39 |
P value = 0.572 (Fisher's exact test), Q value = 1
Table S172. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
FGFR3 MUTATED | 2 | 0 | 2 |
FGFR3 WILD-TYPE | 166 | 111 | 134 |
P value = 0.839 (Fisher's exact test), Q value = 1
Table S173. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
FGFR3 MUTATED | 1 | 1 | 2 |
FGFR3 WILD-TYPE | 95 | 52 | 92 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S174. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
FGFR3 MUTATED | 1 | 1 | 0 | 1 | 0 | 0 |
FGFR3 WILD-TYPE | 87 | 74 | 74 | 58 | 38 | 52 |
P value = 0.792 (Fisher's exact test), Q value = 1
Table S175. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
FGFR3 MUTATED | 1 | 1 | 1 |
FGFR3 WILD-TYPE | 81 | 174 | 128 |
P value = 0.828 (Fisher's exact test), Q value = 1
Table S176. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
FGFR3 MUTATED | 2 | 1 | 1 |
FGFR3 WILD-TYPE | 175 | 72 | 164 |
P value = 0.479 (Fisher's exact test), Q value = 1
Table S177. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
FGFR3 MUTATED | 2 | 0 | 2 | 0 | 0 | 0 |
FGFR3 WILD-TYPE | 106 | 144 | 111 | 22 | 24 | 4 |
P value = 0.821 (Fisher's exact test), Q value = 1
Table S178. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
FGFR3 MUTATED | 1 | 1 | 2 |
FGFR3 WILD-TYPE | 96 | 177 | 130 |
P value = 0.313 (Fisher's exact test), Q value = 1
Table S179. Gene #18: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
FGFR3 MUTATED | 3 | 1 | 0 |
FGFR3 WILD-TYPE | 127 | 202 | 74 |
P value = 0.633 (Fisher's exact test), Q value = 1
Table S180. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
PTCH1 MUTATED | 2 | 3 | 2 |
PTCH1 WILD-TYPE | 166 | 108 | 134 |
P value = 0.0549 (Fisher's exact test), Q value = 1
Table S181. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
PTCH1 MUTATED | 0 | 0 | 4 |
PTCH1 WILD-TYPE | 96 | 53 | 90 |
P value = 0.281 (Fisher's exact test), Q value = 1
Table S182. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
PTCH1 MUTATED | 2 | 1 | 0 | 1 | 0 | 3 |
PTCH1 WILD-TYPE | 86 | 74 | 74 | 58 | 38 | 49 |
P value = 0.119 (Fisher's exact test), Q value = 1
Table S183. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
PTCH1 MUTATED | 0 | 2 | 5 |
PTCH1 WILD-TYPE | 82 | 173 | 124 |
P value = 0.877 (Fisher's exact test), Q value = 1
Table S184. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
PTCH1 MUTATED | 4 | 1 | 2 |
PTCH1 WILD-TYPE | 173 | 72 | 163 |
P value = 0.101 (Fisher's exact test), Q value = 1
Table S185. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
PTCH1 MUTATED | 3 | 2 | 0 | 0 | 2 | 0 |
PTCH1 WILD-TYPE | 105 | 142 | 113 | 22 | 22 | 4 |
P value = 0.796 (Fisher's exact test), Q value = 1
Table S186. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
PTCH1 MUTATED | 1 | 3 | 3 |
PTCH1 WILD-TYPE | 96 | 175 | 129 |
P value = 0.217 (Fisher's exact test), Q value = 1
Table S187. Gene #19: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
PTCH1 MUTATED | 1 | 3 | 3 |
PTCH1 WILD-TYPE | 129 | 200 | 71 |
P value = 0.571 (Fisher's exact test), Q value = 1
Table S188. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
RBMX MUTATED | 2 | 0 | 2 |
RBMX WILD-TYPE | 166 | 111 | 134 |
P value = 0.619 (Fisher's exact test), Q value = 1
Table S189. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
RBMX MUTATED | 1 | 0 | 2 |
RBMX WILD-TYPE | 95 | 53 | 92 |
P value = 0.0985 (Fisher's exact test), Q value = 1
Table S190. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
RBMX MUTATED | 0 | 1 | 0 | 0 | 0 | 2 |
RBMX WILD-TYPE | 88 | 74 | 74 | 59 | 38 | 50 |
P value = 0.599 (Fisher's exact test), Q value = 1
Table S191. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
RBMX MUTATED | 0 | 1 | 2 |
RBMX WILD-TYPE | 82 | 174 | 127 |
P value = 0.407 (Fisher's exact test), Q value = 1
Table S192. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
RBMX MUTATED | 1 | 0 | 3 |
RBMX WILD-TYPE | 176 | 73 | 162 |
P value = 0.484 (Fisher's exact test), Q value = 1
Table S193. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
RBMX MUTATED | 2 | 0 | 2 | 0 | 0 | 0 |
RBMX WILD-TYPE | 106 | 144 | 111 | 22 | 24 | 4 |
P value = 0.251 (Fisher's exact test), Q value = 1
Table S194. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
RBMX MUTATED | 1 | 0 | 2 |
RBMX WILD-TYPE | 96 | 178 | 130 |
P value = 0.173 (Fisher's exact test), Q value = 1
Table S195. Gene #20: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
RBMX MUTATED | 2 | 0 | 1 |
RBMX WILD-TYPE | 128 | 203 | 73 |
P value = 0.625 (Fisher's exact test), Q value = 1
Table S196. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
ARAP3 MUTATED | 2 | 1 | 0 |
ARAP3 WILD-TYPE | 166 | 110 | 136 |
P value = 1 (Fisher's exact test), Q value = 1
Table S197. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
ARAP3 MUTATED | 1 | 1 | 1 | 0 | 0 | 0 |
ARAP3 WILD-TYPE | 87 | 74 | 73 | 59 | 38 | 52 |
P value = 0.795 (Fisher's exact test), Q value = 1
Table S198. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
ARAP3 MUTATED | 1 | 1 | 1 |
ARAP3 WILD-TYPE | 81 | 174 | 128 |
P value = 0.784 (Fisher's exact test), Q value = 1
Table S199. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
ARAP3 MUTATED | 1 | 0 | 2 |
ARAP3 WILD-TYPE | 176 | 73 | 163 |
P value = 1 (Fisher's exact test), Q value = 1
Table S200. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
ARAP3 MUTATED | 1 | 1 | 1 | 0 | 0 | 0 |
ARAP3 WILD-TYPE | 107 | 143 | 112 | 22 | 24 | 4 |
P value = 0.796 (Fisher's exact test), Q value = 1
Table S201. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
ARAP3 MUTATED | 0 | 2 | 1 |
ARAP3 WILD-TYPE | 97 | 176 | 131 |
P value = 1 (Fisher's exact test), Q value = 1
Table S202. Gene #21: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
ARAP3 MUTATED | 1 | 2 | 0 |
ARAP3 WILD-TYPE | 129 | 201 | 74 |
P value = 1 (Fisher's exact test), Q value = 1
Table S203. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
GPR172B MUTATED | 2 | 1 | 1 |
GPR172B WILD-TYPE | 166 | 110 | 135 |
P value = 0.0778 (Fisher's exact test), Q value = 1
Table S204. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
GPR172B MUTATED | 0 | 0 | 0 | 2 | 0 | 1 |
GPR172B WILD-TYPE | 88 | 75 | 74 | 57 | 38 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
Table S205. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
GPR172B MUTATED | 0 | 2 | 1 |
GPR172B WILD-TYPE | 82 | 173 | 128 |
P value = 0.529 (Fisher's exact test), Q value = 1
Table S206. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
GPR172B MUTATED | 3 | 0 | 1 |
GPR172B WILD-TYPE | 174 | 73 | 164 |
P value = 1 (Fisher's exact test), Q value = 1
Table S207. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
GPR172B MUTATED | 1 | 2 | 1 | 0 | 0 | 0 |
GPR172B WILD-TYPE | 107 | 142 | 112 | 22 | 24 | 4 |
P value = 0.611 (Fisher's exact test), Q value = 1
Table S208. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
GPR172B MUTATED | 0 | 1 | 2 |
GPR172B WILD-TYPE | 97 | 177 | 130 |
P value = 0.433 (Fisher's exact test), Q value = 1
Table S209. Gene #22: 'GPR172B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
GPR172B MUTATED | 0 | 2 | 1 |
GPR172B WILD-TYPE | 130 | 201 | 73 |
P value = 1 (Fisher's exact test), Q value = 1
Table S210. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
EGFR MUTATED | 3 | 2 | 2 |
EGFR WILD-TYPE | 165 | 109 | 134 |
P value = 0.683 (Fisher's exact test), Q value = 1
Table S211. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
EGFR MUTATED | 2 | 0 | 2 |
EGFR WILD-TYPE | 94 | 53 | 92 |
P value = 0.623 (Fisher's exact test), Q value = 1
Table S212. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
EGFR MUTATED | 2 | 1 | 0 | 1 | 1 | 2 |
EGFR WILD-TYPE | 86 | 74 | 74 | 58 | 37 | 50 |
P value = 0.378 (Fisher's exact test), Q value = 1
Table S213. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
EGFR MUTATED | 3 | 2 | 2 |
EGFR WILD-TYPE | 79 | 173 | 127 |
P value = 0.465 (Fisher's exact test), Q value = 1
Table S214. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
EGFR MUTATED | 3 | 0 | 4 |
EGFR WILD-TYPE | 174 | 73 | 161 |
P value = 0.888 (Fisher's exact test), Q value = 1
Table S215. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
EGFR MUTATED | 1 | 3 | 3 | 0 | 0 | 0 |
EGFR WILD-TYPE | 107 | 141 | 110 | 22 | 24 | 4 |
P value = 1 (Fisher's exact test), Q value = 1
Table S216. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
EGFR MUTATED | 1 | 3 | 2 |
EGFR WILD-TYPE | 96 | 175 | 130 |
P value = 0.752 (Fisher's exact test), Q value = 1
Table S217. Gene #23: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
EGFR MUTATED | 2 | 4 | 0 |
EGFR WILD-TYPE | 128 | 199 | 74 |
P value = 1 (Fisher's exact test), Q value = 1
Table S218. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
IL1RAP MUTATED | 2 | 1 | 1 |
IL1RAP WILD-TYPE | 166 | 110 | 135 |
P value = 0.616 (Fisher's exact test), Q value = 1
Table S219. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
IL1RAP MUTATED | 1 | 0 | 2 |
IL1RAP WILD-TYPE | 95 | 53 | 92 |
P value = 0.294 (Fisher's exact test), Q value = 1
Table S220. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
IL1RAP MUTATED | 2 | 0 | 0 | 0 | 1 | 1 |
IL1RAP WILD-TYPE | 86 | 75 | 74 | 59 | 37 | 51 |
P value = 0.0739 (Fisher's exact test), Q value = 1
Table S221. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
IL1RAP MUTATED | 2 | 0 | 2 |
IL1RAP WILD-TYPE | 80 | 175 | 127 |
P value = 0.829 (Fisher's exact test), Q value = 1
Table S222. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
IL1RAP MUTATED | 2 | 1 | 1 |
IL1RAP WILD-TYPE | 175 | 72 | 164 |
P value = 0.814 (Fisher's exact test), Q value = 1
Table S223. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
IL1RAP MUTATED | 2 | 1 | 1 | 0 | 0 | 0 |
IL1RAP WILD-TYPE | 106 | 143 | 112 | 22 | 24 | 4 |
P value = 0.566 (Fisher's exact test), Q value = 1
Table S224. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
IL1RAP MUTATED | 0 | 3 | 1 |
IL1RAP WILD-TYPE | 97 | 175 | 131 |
P value = 0.823 (Fisher's exact test), Q value = 1
Table S225. Gene #24: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
IL1RAP MUTATED | 1 | 3 | 0 |
IL1RAP WILD-TYPE | 129 | 200 | 74 |
P value = 0.229 (Fisher's exact test), Q value = 1
Table S226. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
BCL6 MUTATED | 4 | 0 | 1 |
BCL6 WILD-TYPE | 164 | 111 | 135 |
P value = 0.616 (Fisher's exact test), Q value = 1
Table S227. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
BCL6 MUTATED | 1 | 0 | 2 |
BCL6 WILD-TYPE | 95 | 53 | 92 |
P value = 0.724 (Fisher's exact test), Q value = 1
Table S228. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
BCL6 MUTATED | 1 | 2 | 2 | 0 | 0 | 0 |
BCL6 WILD-TYPE | 87 | 73 | 72 | 59 | 38 | 52 |
P value = 0.144 (Fisher's exact test), Q value = 1
Table S229. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
BCL6 MUTATED | 3 | 1 | 1 |
BCL6 WILD-TYPE | 79 | 174 | 128 |
P value = 1 (Fisher's exact test), Q value = 1
Table S230. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
BCL6 MUTATED | 2 | 1 | 2 |
BCL6 WILD-TYPE | 175 | 72 | 163 |
P value = 0.804 (Fisher's exact test), Q value = 1
Table S231. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
BCL6 MUTATED | 2 | 1 | 2 | 0 | 0 | 0 |
BCL6 WILD-TYPE | 106 | 143 | 111 | 22 | 24 | 4 |
P value = 0.726 (Fisher's exact test), Q value = 1
Table S232. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
BCL6 MUTATED | 2 | 2 | 1 |
BCL6 WILD-TYPE | 95 | 176 | 131 |
P value = 0.855 (Fisher's exact test), Q value = 1
Table S233. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
BCL6 MUTATED | 2 | 2 | 1 |
BCL6 WILD-TYPE | 128 | 201 | 73 |
P value = 1 (Fisher's exact test), Q value = 1
Table S234. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
BCL6 MUTATED | 1 | 1 | 1 |
BCL6 WILD-TYPE | 40 | 73 | 67 |
P value = 1 (Fisher's exact test), Q value = 1
Table S235. Gene #25: 'BCL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
BCL6 MUTATED | 1 | 1 | 1 |
BCL6 WILD-TYPE | 63 | 78 | 39 |
P value = 0.768 (Fisher's exact test), Q value = 1
Table S236. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
NFAT5 MUTATED | 3 | 2 | 1 |
NFAT5 WILD-TYPE | 165 | 109 | 135 |
P value = 0.877 (Fisher's exact test), Q value = 1
Table S237. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
NFAT5 MUTATED | 2 | 1 | 3 |
NFAT5 WILD-TYPE | 94 | 52 | 91 |
P value = 0.27 (Fisher's exact test), Q value = 1
Table S238. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
NFAT5 MUTATED | 0 | 1 | 1 | 0 | 1 | 2 |
NFAT5 WILD-TYPE | 88 | 74 | 73 | 59 | 37 | 50 |
P value = 0.718 (Fisher's exact test), Q value = 1
Table S239. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
NFAT5 MUTATED | 0 | 3 | 2 |
NFAT5 WILD-TYPE | 82 | 172 | 127 |
P value = 0.297 (Fisher's exact test), Q value = 1
Table S240. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
NFAT5 MUTATED | 1 | 1 | 4 |
NFAT5 WILD-TYPE | 176 | 72 | 161 |
P value = 0.431 (Fisher's exact test), Q value = 1
Table S241. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
NFAT5 MUTATED | 4 | 1 | 1 | 0 | 0 | 0 |
NFAT5 WILD-TYPE | 104 | 143 | 112 | 22 | 24 | 4 |
P value = 0.243 (Fisher's exact test), Q value = 1
Table S242. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
NFAT5 MUTATED | 1 | 1 | 4 |
NFAT5 WILD-TYPE | 96 | 177 | 128 |
P value = 1 (Fisher's exact test), Q value = 1
Table S243. Gene #26: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
NFAT5 MUTATED | 2 | 3 | 1 |
NFAT5 WILD-TYPE | 128 | 200 | 73 |
P value = 0.857 (Fisher's exact test), Q value = 1
Table S244. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
LARP1 MUTATED | 3 | 1 | 1 |
LARP1 WILD-TYPE | 165 | 110 | 135 |
P value = 0.438 (Fisher's exact test), Q value = 1
Table S245. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
LARP1 MUTATED | 2 | 1 | 0 |
LARP1 WILD-TYPE | 94 | 52 | 94 |
P value = 0.179 (Fisher's exact test), Q value = 1
Table S246. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
LARP1 MUTATED | 1 | 0 | 1 | 3 | 0 | 0 |
LARP1 WILD-TYPE | 87 | 75 | 73 | 56 | 38 | 52 |
P value = 0.719 (Fisher's exact test), Q value = 1
Table S247. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
LARP1 MUTATED | 0 | 3 | 2 |
LARP1 WILD-TYPE | 82 | 172 | 127 |
P value = 0.848 (Fisher's exact test), Q value = 1
Table S248. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
LARP1 MUTATED | 3 | 0 | 2 |
LARP1 WILD-TYPE | 174 | 73 | 163 |
P value = 0.864 (Fisher's exact test), Q value = 1
Table S249. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
LARP1 MUTATED | 1 | 3 | 1 | 0 | 0 | 0 |
LARP1 WILD-TYPE | 107 | 141 | 112 | 22 | 24 | 4 |
P value = 0.617 (Fisher's exact test), Q value = 1
Table S250. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
LARP1 MUTATED | 0 | 3 | 2 |
LARP1 WILD-TYPE | 97 | 175 | 130 |
P value = 0.27 (Fisher's exact test), Q value = 1
Table S251. Gene #27: 'LARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
LARP1 MUTATED | 0 | 4 | 1 |
LARP1 WILD-TYPE | 130 | 199 | 73 |
P value = 0.675 (Fisher's exact test), Q value = 1
Table S252. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
KIAA1751 MUTATED | 2 | 1 | 3 |
KIAA1751 WILD-TYPE | 166 | 110 | 133 |
P value = 0.639 (Fisher's exact test), Q value = 1
Table S253. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
KIAA1751 MUTATED | 3 | 0 | 2 |
KIAA1751 WILD-TYPE | 93 | 53 | 92 |
P value = 0.532 (Fisher's exact test), Q value = 1
Table S254. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
KIAA1751 MUTATED | 2 | 0 | 1 | 2 | 0 | 0 |
KIAA1751 WILD-TYPE | 86 | 75 | 73 | 57 | 38 | 52 |
P value = 0.0535 (Fisher's exact test), Q value = 1
Table S255. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
KIAA1751 MUTATED | 2 | 0 | 3 |
KIAA1751 WILD-TYPE | 80 | 175 | 126 |
P value = 0.405 (Fisher's exact test), Q value = 1
Table S256. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
KIAA1751 MUTATED | 2 | 2 | 1 |
KIAA1751 WILD-TYPE | 175 | 71 | 164 |
P value = 0.93 (Fisher's exact test), Q value = 1
Table S257. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
KIAA1751 MUTATED | 2 | 2 | 1 | 0 | 0 | 0 |
KIAA1751 WILD-TYPE | 106 | 142 | 112 | 22 | 24 | 4 |
P value = 0.496 (Fisher's exact test), Q value = 1
Table S258. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
KIAA1751 MUTATED | 0 | 4 | 2 |
KIAA1751 WILD-TYPE | 97 | 174 | 130 |
P value = 0.169 (Fisher's exact test), Q value = 1
Table S259. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
KIAA1751 MUTATED | 0 | 4 | 2 |
KIAA1751 WILD-TYPE | 130 | 199 | 72 |
P value = 0.792 (Fisher's exact test), Q value = 1
Table S260. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 74 | 68 |
KIAA1751 MUTATED | 0 | 2 | 1 |
KIAA1751 WILD-TYPE | 41 | 72 | 67 |
P value = 0.161 (Fisher's exact test), Q value = 1
Table S261. Gene #28: 'KIAA1751 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 79 | 40 |
KIAA1751 MUTATED | 0 | 1 | 2 |
KIAA1751 WILD-TYPE | 64 | 78 | 38 |
P value = 0.571 (Fisher's exact test), Q value = 1
Table S262. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 168 | 111 | 136 |
INSRR MUTATED | 2 | 0 | 2 |
INSRR WILD-TYPE | 166 | 111 | 134 |
P value = 0.12 (Fisher's exact test), Q value = 1
Table S263. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 96 | 53 | 94 |
INSRR MUTATED | 0 | 2 | 2 |
INSRR WILD-TYPE | 96 | 51 | 92 |
P value = 0.348 (Fisher's exact test), Q value = 1
Table S264. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 75 | 74 | 59 | 38 | 52 |
INSRR MUTATED | 0 | 0 | 2 | 1 | 0 | 1 |
INSRR WILD-TYPE | 88 | 75 | 72 | 58 | 38 | 51 |
P value = 0.685 (Fisher's exact test), Q value = 1
Table S265. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 175 | 129 |
INSRR MUTATED | 1 | 1 | 2 |
INSRR WILD-TYPE | 81 | 174 | 127 |
P value = 0.406 (Fisher's exact test), Q value = 1
Table S266. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 73 | 165 |
INSRR MUTATED | 1 | 0 | 3 |
INSRR WILD-TYPE | 176 | 73 | 162 |
P value = 0.239 (Fisher's exact test), Q value = 1
Table S267. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 144 | 113 | 22 | 24 | 4 |
INSRR MUTATED | 2 | 1 | 0 | 0 | 1 | 0 |
INSRR WILD-TYPE | 106 | 143 | 113 | 22 | 23 | 4 |
P value = 0.46 (Fisher's exact test), Q value = 1
Table S268. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 97 | 178 | 132 |
INSRR MUTATED | 2 | 1 | 1 |
INSRR WILD-TYPE | 95 | 177 | 131 |
P value = 0.249 (Fisher's exact test), Q value = 1
Table S269. Gene #29: 'INSRR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 130 | 203 | 74 |
INSRR MUTATED | 1 | 1 | 2 |
INSRR WILD-TYPE | 129 | 202 | 72 |
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Mutation data file = transformed.cor.cli.txt
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Molecular subtypes file = KIRC-TP.transferedmergedcluster.txt
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Number of patients = 417
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Number of significantly mutated genes = 29
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Number of Molecular subtypes = 12
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.