Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
15 July 2014  |  analyses__2014_07_15
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1NV9H23
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 148 genes and 8 molecular subtypes across 41 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 148 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features
CN
CNMF
METHLYATION
CNMF
MRNASEQ
CNMF
MRNASEQ
CHIERARCHICAL
MIRSEQ
CNMF
MIRSEQ
CHIERARCHICAL
MIRSEQ
MATURE
CNMF
MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
KRAS 30 (73%) 11 0.534
(1.00)
0.725
(1.00)
1
(1.00)
0.263
(1.00)
0.815
(1.00)
0.921
(1.00)
0.503
(1.00)
0.891
(1.00)
TP53 24 (59%) 17 0.313
(1.00)
0.306
(1.00)
0.893
(1.00)
0.965
(1.00)
0.592
(1.00)
0.113
(1.00)
0.223
(1.00)
0.902
(1.00)
C19ORF55 7 (17%) 34 1
(1.00)
0.313
(1.00)
0.838
(1.00)
0.14
(1.00)
1
(1.00)
0.458
(1.00)
1
(1.00)
0.716
(1.00)
B4GALT2 5 (12%) 36 0.289
(1.00)
1
(1.00)
0.544
(1.00)
0.638
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
CDKN2A 7 (17%) 34 0.00958
(1.00)
0.0636
(1.00)
0.709
(1.00)
0.597
(1.00)
0.299
(1.00)
0.0137
(1.00)
0.154
(1.00)
0.35
(1.00)
NFIL3 6 (15%) 35 0.501
(1.00)
0.446
(1.00)
1
(1.00)
0.353
(1.00)
0.575
(1.00)
0.46
(1.00)
1
(1.00)
0.718
(1.00)
OTOF 9 (22%) 32 0.177
(1.00)
0.422
(1.00)
0.857
(1.00)
0.93
(1.00)
0.529
(1.00)
0.735
(1.00)
0.558
(1.00)
0.657
(1.00)
IRS1 6 (15%) 35 0.634
(1.00)
0.538
(1.00)
0.209
(1.00)
0.219
(1.00)
0.0305
(1.00)
0.433
(1.00)
0.0744
(1.00)
0.513
(1.00)
GAS2L2 6 (15%) 35 0.564
(1.00)
0.842
(1.00)
1
(1.00)
1
(1.00)
0.842
(1.00)
0.0717
(1.00)
0.485
(1.00)
0.516
(1.00)
RBM10 6 (15%) 35 0.532
(1.00)
0.124
(1.00)
0.154
(1.00)
0.128
(1.00)
0.0529
(1.00)
0.0611
(1.00)
0.0458
(1.00)
0.0366
(1.00)
APP 6 (15%) 35 0.0924
(1.00)
0.74
(1.00)
0.675
(1.00)
0.491
(1.00)
0.392
(1.00)
0.603
(1.00)
1
(1.00)
1
(1.00)
IPP 5 (12%) 36 0.339
(1.00)
0.399
(1.00)
0.197
(1.00)
0.118
(1.00)
0.47
(1.00)
0.224
(1.00)
0.291
(1.00)
0.258
(1.00)
MAMLD1 7 (17%) 34 0.381
(1.00)
1
(1.00)
0.717
(1.00)
0.424
(1.00)
0.791
(1.00)
0.0837
(1.00)
0.185
(1.00)
1
(1.00)
ARHGAP18 4 (10%) 37 0.395
(1.00)
0.171
(1.00)
1
(1.00)
0.876
(1.00)
0.646
(1.00)
0.586
(1.00)
1
(1.00)
0.648
(1.00)
PHF8 5 (12%) 36 0.672
(1.00)
0.195
(1.00)
0.134
(1.00)
0.284
(1.00)
0.12
(1.00)
0.333
(1.00)
0.154
(1.00)
0.16
(1.00)
THBS4 6 (15%) 35 0.672
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.891
(1.00)
0.715
(1.00)
1
(1.00)
SMAD4 7 (17%) 34 0.558
(1.00)
0.488
(1.00)
0.326
(1.00)
0.0611
(1.00)
0.679
(1.00)
0.0745
(1.00)
0.0386
(1.00)
0.35
(1.00)
PTPRF 7 (17%) 34 0.401
(1.00)
0.488
(1.00)
0.542
(1.00)
0.648
(1.00)
0.146
(1.00)
0.0847
(1.00)
1
(1.00)
0.208
(1.00)
MED12 6 (15%) 35 0.405
(1.00)
0.184
(1.00)
0.263
(1.00)
0.743
(1.00)
0.0666
(1.00)
0.586
(1.00)
0.715
(1.00)
0.207
(1.00)
BMP2K 4 (10%) 37 0.552
(1.00)
0.808
(1.00)
0.472
(1.00)
0.0923
(1.00)
0.362
(1.00)
0.315
(1.00)
1
(1.00)
0.514
(1.00)
ZMYM5 4 (10%) 37 0.394
(1.00)
0.661
(1.00)
0.628
(1.00)
0.615
(1.00)
1
(1.00)
0.194
(1.00)
0.363
(1.00)
0.795
(1.00)
SYT15 4 (10%) 37 0.811
(1.00)
0.392
(1.00)
1
(1.00)
1
(1.00)
0.646
(1.00)
0.466
(1.00)
0.101
(1.00)
0.65
(1.00)
PLAU 4 (10%) 37 0.134
(1.00)
0.521
(1.00)
0.473
(1.00)
0.362
(1.00)
0.242
(1.00)
0.493
(1.00)
0.0371
(1.00)
0.516
(1.00)
MEPCE 4 (10%) 37 1
(1.00)
0.662
(1.00)
0.631
(1.00)
0.61
(1.00)
1
(1.00)
0.194
(1.00)
1
(1.00)
0.796
(1.00)
ZMIZ1 5 (12%) 36 0.17
(1.00)
1
(1.00)
0.833
(1.00)
0.803
(1.00)
0.679
(1.00)
0.602
(1.00)
1
(1.00)
0.672
(1.00)
SLC39A5 4 (10%) 37 0.553
(1.00)
0.233
(1.00)
0.798
(1.00)
0.0922
(1.00)
0.0518
(1.00)
0.811
(1.00)
0.808
(1.00)
1
(1.00)
GUCY2F 5 (12%) 36 0.34
(1.00)
0.399
(1.00)
1
(1.00)
0.4
(1.00)
0.0933
(1.00)
0.484
(1.00)
0.288
(1.00)
0.829
(1.00)
EDC4 5 (12%) 36 0.848
(1.00)
0.476
(1.00)
1
(1.00)
0.849
(1.00)
0.839
(1.00)
0.269
(1.00)
1
(1.00)
0.647
(1.00)
SEH1L 3 (7%) 38 0.863
(1.00)
0.774
(1.00)
0.0969
(1.00)
0.584
(1.00)
0.307
(1.00)
0.16
(1.00)
0.0577
(1.00)
0.114
(1.00)
SLC4A3 3 (7%) 38 1
(1.00)
0.423
(1.00)
0.738
(1.00)
0.582
(1.00)
0.538
(1.00)
0.368
(1.00)
0.101
(1.00)
0.413
(1.00)
CD99L2 4 (10%) 37 0.498
(1.00)
0.522
(1.00)
0.471
(1.00)
0.34
(1.00)
0.364
(1.00)
0.244
(1.00)
0.808
(1.00)
0.518
(1.00)
SBNO1 4 (10%) 37 0.0806
(1.00)
0.121
(1.00)
0.631
(1.00)
0.61
(1.00)
0.643
(1.00)
0.335
(1.00)
0.364
(1.00)
0.161
(1.00)
NPNT 3 (7%) 38 0.753
(1.00)
0.0342
(1.00)
0.357
(1.00)
0.504
(1.00)
0.538
(1.00)
0.933
(1.00)
0.564
(1.00)
0.573
(1.00)
TMEM175 5 (12%) 36 0.226
(1.00)
0.839
(1.00)
0.542
(1.00)
0.874
(1.00)
1
(1.00)
0.108
(1.00)
1
(1.00)
0.321
(1.00)
IRX4 4 (10%) 37 0.395
(1.00)
0.231
(1.00)
0.0628
(1.00)
0.133
(1.00)
0.313
(1.00)
0.587
(1.00)
0.808
(1.00)
0.219
(1.00)
CLCC1 3 (7%) 38 0.292
(1.00)
0.187
(1.00)
0.531
(1.00)
0.941
(1.00)
0.0853
(1.00)
1
(1.00)
0.156
(1.00)
0.773
(1.00)
BTNL8 4 (10%) 37 0.738
(1.00)
0.392
(1.00)
0.0225
(1.00)
0.0672
(1.00)
0.216
(1.00)
0.00513
(1.00)
0.272
(1.00)
0.108
(1.00)
SYNGAP1 5 (12%) 36 0.172
(1.00)
1
(1.00)
0.547
(1.00)
1
(1.00)
0.684
(1.00)
0.705
(1.00)
0.175
(1.00)
0.828
(1.00)
F8 4 (10%) 37 0.0671
(1.00)
0.119
(1.00)
1
(1.00)
0.136
(1.00)
0.643
(1.00)
0.0561
(1.00)
0.101
(1.00)
0.645
(1.00)
SORBS2 6 (15%) 35 0.0992
(1.00)
0.184
(1.00)
0.675
(1.00)
0.638
(1.00)
0.47
(1.00)
0.702
(1.00)
0.284
(1.00)
0.565
(1.00)
NR4A3 4 (10%) 37 1
(1.00)
0.66
(1.00)
0.631
(1.00)
0.612
(1.00)
1
(1.00)
0.337
(1.00)
0.364
(1.00)
0.796
(1.00)
ZNF337 4 (10%) 37 0.607
(1.00)
0.389
(1.00)
0.34
(1.00)
0.162
(1.00)
0.212
(1.00)
0.194
(1.00)
0.0193
(1.00)
0.109
(1.00)
TAOK2 4 (10%) 37 0.131
(1.00)
0.23
(1.00)
0.00283
(1.00)
0.0277
(1.00)
0.00307
(1.00)
0.00998
(1.00)
0.0582
(1.00)
0.0131
(1.00)
UNC5A 4 (10%) 37 1
(1.00)
0.807
(1.00)
0.527
(1.00)
0.503
(1.00)
1
(1.00)
0.136
(1.00)
0.75
(1.00)
0.771
(1.00)
TNFSF9 4 (10%) 37 0.275
(1.00)
1
(1.00)
1
(1.00)
0.847
(1.00)
0.841
(1.00)
0.468
(1.00)
0.1
(1.00)
0.65
(1.00)
TEX2 4 (10%) 37 0.443
(1.00)
0.521
(1.00)
0.473
(1.00)
0.85
(1.00)
0.164
(1.00)
0.223
(1.00)
0.485
(1.00)
0.513
(1.00)
RBM43 3 (7%) 38 0.346
(1.00)
0.424
(1.00)
CIR1 3 (7%) 38 0.864
(1.00)
1
(1.00)
0.0976
(1.00)
0.583
(1.00)
0.309
(1.00)
0.0771
(1.00)
0.751
(1.00)
0.114
(1.00)
TOX4 4 (10%) 37 0.496
(1.00)
0.662
(1.00)
0.475
(1.00)
0.85
(1.00)
0.841
(1.00)
0.132
(1.00)
1
(1.00)
0.516
(1.00)
HIBCH 3 (7%) 38 0.865
(1.00)
0.188
(1.00)
0.53
(1.00)
0.335
(1.00)
0.306
(1.00)
1
(1.00)
0.751
(1.00)
0.773
(1.00)
CRAT 3 (7%) 38 0.292
(1.00)
0.189
(1.00)
0.0235
(1.00)
0.338
(1.00)
0.0032
(1.00)
0.231
(1.00)
0.0593
(1.00)
0.0598
(1.00)
SRP14 3 (7%) 38 0.865
(1.00)
0.576
(1.00)
0.741
(1.00)
0.582
(1.00)
0.307
(1.00)
0.666
(1.00)
1
(1.00)
0.771
(1.00)
PDZD7 4 (10%) 37 0.445
(1.00)
1
(1.00)
1
(1.00)
0.849
(1.00)
0.84
(1.00)
0.464
(1.00)
0.482
(1.00)
0.651
(1.00)
POP5 3 (7%) 38 0.653
(1.00)
0.425
(1.00)
0.738
(1.00)
0.585
(1.00)
0.537
(1.00)
0.366
(1.00)
0.749
(1.00)
1
(1.00)
UNC5D 3 (7%) 38 0.477
(1.00)
0.424
(1.00)
0.74
(1.00)
0.94
(1.00)
0.54
(1.00)
0.134
(1.00)
0.752
(1.00)
0.416
(1.00)
FAM47C 5 (12%) 36 0.538
(1.00)
1
(1.00)
1
(1.00)
0.738
(1.00)
1
(1.00)
0.964
(1.00)
0.449
(1.00)
0.828
(1.00)
TMEM184A 4 (10%) 37 0.552
(1.00)
0.523
(1.00)
0.0379
(1.00)
0.0923
(1.00)
0.244
(1.00)
0.055
(1.00)
0.485
(1.00)
0.0643
(1.00)
BEGAIN 4 (10%) 37 0.132
(1.00)
0.229
(1.00)
0.8
(1.00)
0.221
(1.00)
0.0509
(1.00)
0.497
(1.00)
0.482
(1.00)
0.299
(1.00)
PASD1 5 (12%) 36 0.913
(1.00)
0.568
(1.00)
0.544
(1.00)
0.736
(1.00)
0.468
(1.00)
0.292
(1.00)
0.0469
(1.00)
0.315
(1.00)
RBM45 4 (10%) 37 0.275
(1.00)
1
(1.00)
0.469
(1.00)
0.491
(1.00)
0.839
(1.00)
0.496
(1.00)
0.274
(1.00)
0.514
(1.00)
POM121 4 (10%) 37 0.442
(1.00)
0.805
(1.00)
0.798
(1.00)
0.224
(1.00)
0.839
(1.00)
0.464
(1.00)
0.487
(1.00)
1
(1.00)
EME2 3 (7%) 38 0.291
(1.00)
0.575
(1.00)
0.53
(1.00)
0.505
(1.00)
0.0846
(1.00)
0.37
(1.00)
0.156
(1.00)
0.772
(1.00)
CUL4B 3 (7%) 38 0.292
(1.00)
0.776
(1.00)
0.162
(1.00)
0.336
(1.00)
0.0297
(1.00)
0.16
(1.00)
0.156
(1.00)
0.111
(1.00)
DIAPH3 4 (10%) 37 0.393
(1.00)
0.66
(1.00)
0.801
(1.00)
0.45
(1.00)
0.315
(1.00)
0.464
(1.00)
1
(1.00)
1
(1.00)
IFT46 4 (10%) 37 0.736
(1.00)
1
(1.00)
0.53
(1.00)
0.189
(1.00)
0.2
(1.00)
0.371
(1.00)
0.749
(1.00)
0.77
(1.00)
OTUD4 5 (12%) 36 0.625
(1.00)
0.685
(1.00)
0.832
(1.00)
0.0232
(1.00)
0.683
(1.00)
0.0177
(1.00)
0.446
(1.00)
0.465
(1.00)
GABBR1 4 (10%) 37 0.811
(1.00)
0.39
(1.00)
1
(1.00)
0.221
(1.00)
0.646
(1.00)
0.467
(1.00)
1
(1.00)
0.65
(1.00)
MYH10 4 (10%) 37 0.442
(1.00)
0.523
(1.00)
0.472
(1.00)
0.848
(1.00)
0.842
(1.00)
0.226
(1.00)
0.278
(1.00)
0.519
(1.00)
ERF 4 (10%) 37 0.44
(1.00)
0.172
(1.00)
0.339
(1.00)
0.701
(1.00)
0.216
(1.00)
0.0721
(1.00)
0.275
(1.00)
0.108
(1.00)
OR10A7 4 (10%) 37 0.308
(1.00)
1
(1.00)
1
(1.00)
0.94
(1.00)
0.37
(1.00)
0.58
(1.00)
0.271
(1.00)
1
(1.00)
BRDT 4 (10%) 37 0.274
(1.00)
1
(1.00)
0.473
(1.00)
0.489
(1.00)
0.163
(1.00)
0.498
(1.00)
0.275
(1.00)
0.514
(1.00)
CDHR5 4 (10%) 37 0.804
(1.00)
1
(1.00)
0.0962
(1.00)
0.0919
(1.00)
0.841
(1.00)
0.497
(1.00)
0.485
(1.00)
1
(1.00)
EPS8L3 3 (7%) 38 0.479
(1.00)
0.576
(1.00)
GPR25 3 (7%) 38 1
(1.00)
0.423
(1.00)
0.738
(1.00)
0.585
(1.00)
0.537
(1.00)
0.198
(1.00)
0.408
(1.00)
0.416
(1.00)
PPARGC1B 3 (7%) 38 0.865
(1.00)
0.775
(1.00)
0.165
(1.00)
0.339
(1.00)
0.0292
(1.00)
0.159
(1.00)
0.0576
(1.00)
0.114
(1.00)
FGF10 3 (7%) 38 0.149
(1.00)
0.288
(1.00)
1
(1.00)
0.939
(1.00)
0.37
(1.00)
0.578
(1.00)
0.27
(1.00)
1
(1.00)
SALL1 5 (12%) 36 0.536
(1.00)
1
(1.00)
1
(1.00)
0.85
(1.00)
0.841
(1.00)
0.462
(1.00)
0.484
(1.00)
0.648
(1.00)
VEPH1 4 (10%) 37 0.394
(1.00)
0.66
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.272
(1.00)
1
(1.00)
0.65
(1.00)
ATRX 3 (7%) 38 0.48
(1.00)
0.426
(1.00)
0.74
(1.00)
0.939
(1.00)
0.536
(1.00)
0.368
(1.00)
0.102
(1.00)
0.415
(1.00)
ST6GALNAC5 4 (10%) 37 0.272
(1.00)
0.805
(1.00)
0.63
(1.00)
0.134
(1.00)
0.841
(1.00)
0.194
(1.00)
1
(1.00)
0.797
(1.00)
DHX57 3 (7%) 38 0.75
(1.00)
1
(1.00)
1
(1.00)
0.503
(1.00)
1
(1.00)
0.284
(1.00)
0.751
(1.00)
1
(1.00)
GNL3L 3 (7%) 38 0.0921
(1.00)
1
(1.00)
0.259
(1.00)
0.702
(1.00)
0.81
(1.00)
0.474
(1.00)
0.269
(1.00)
0.286
(1.00)
MST1 5 (12%) 36 0.781
(1.00)
1
(1.00)
0.543
(1.00)
0.458
(1.00)
0.471
(1.00)
0.0945
(1.00)
0.445
(1.00)
0.2
(1.00)
GRB7 4 (10%) 37 0.736
(1.00)
0.117
(1.00)
1
(1.00)
1
(1.00)
0.646
(1.00)
0.267
(1.00)
0.363
(1.00)
0.646
(1.00)
TMC4 5 (12%) 36 0.341
(1.00)
1
(1.00)
1
(1.00)
0.491
(1.00)
0.243
(1.00)
0.195
(1.00)
0.484
(1.00)
0.52
(1.00)
MED9 3 (7%) 38 0.754
(1.00)
1
(1.00)
0.531
(1.00)
0.506
(1.00)
0.198
(1.00)
0.136
(1.00)
0.752
(1.00)
0.771
(1.00)
WASF3 3 (7%) 38 0.561
(1.00)
1
(1.00)
0.53
(1.00)
0.503
(1.00)
0.198
(1.00)
0.136
(1.00)
0.75
(1.00)
0.574
(1.00)
GIT1 3 (7%) 38 0.483
(1.00)
0.424
(1.00)
0.739
(1.00)
0.939
(1.00)
0.536
(1.00)
0.137
(1.00)
0.749
(1.00)
0.416
(1.00)
SV2A 3 (7%) 38 0.344
(1.00)
0.425
(1.00)
1
(1.00)
1
(1.00)
0.813
(1.00)
0.935
(1.00)
0.399
(1.00)
1
(1.00)
UGP2 4 (10%) 37 0.551
(1.00)
0.806
(1.00)
0.163
(1.00)
0.187
(1.00)
0.085
(1.00)
0.0347
(1.00)
0.156
(1.00)
0.0609
(1.00)
ERCC3 3 (7%) 38 0.293
(1.00)
0.125
(1.00)
0.0964
(1.00)
0.271
(1.00)
0.0579
(1.00)
0.0347
(1.00)
0.0594
(1.00)
0.0261
(1.00)
ARMCX3 3 (7%) 38 0.652
(1.00)
1
(1.00)
0.356
(1.00)
0.704
(1.00)
0.809
(1.00)
0.934
(1.00)
1
(1.00)
0.574
(1.00)
TMCO1 3 (7%) 38 0.65
(1.00)
0.288
(1.00)
0.738
(1.00)
0.941
(1.00)
0.81
(1.00)
0.199
(1.00)
0.407
(1.00)
0.414
(1.00)
HMX2 3 (7%) 38 0.292
(1.00)
0.776
(1.00)
0.163
(1.00)
0.337
(1.00)
0.0308
(1.00)
0.159
(1.00)
0.156
(1.00)
0.114
(1.00)
AARS2 4 (10%) 37 0.442
(1.00)
1
(1.00)
0.473
(1.00)
0.491
(1.00)
0.163
(1.00)
0.499
(1.00)
0.482
(1.00)
0.517
(1.00)
ALS2CR11 3 (7%) 38 0.866
(1.00)
0.773
(1.00)
0.741
(1.00)
0.94
(1.00)
0.305
(1.00)
0.368
(1.00)
0.0594
(1.00)
0.414
(1.00)
ARFGAP3 3 (7%) 38 0.864
(1.00)
0.773
(1.00)
0.741
(1.00)
0.585
(1.00)
1
(1.00)
0.472
(1.00)
0.751
(1.00)
0.772
(1.00)
SMG7 3 (7%) 38 0.653
(1.00)
0.286
(1.00)
0.738
(1.00)
0.94
(1.00)
0.811
(1.00)
0.201
(1.00)
0.406
(1.00)
0.414
(1.00)
CHGA 3 (7%) 38 0.478
(1.00)
0.125
(1.00)
0.0973
(1.00)
0.273
(1.00)
0.058
(1.00)
0.0766
(1.00)
0.102
(1.00)
0.0261
(1.00)
FAM63B 3 (7%) 38 0.865
(1.00)
1
(1.00)
0.165
(1.00)
0.337
(1.00)
0.0295
(1.00)
0.0756
(1.00)
0.752
(1.00)
0.113
(1.00)
VPS36 3 (7%) 38 0.864
(1.00)
1
(1.00)
0.738
(1.00)
0.705
(1.00)
1
(1.00)
0.138
(1.00)
0.753
(1.00)
0.772
(1.00)
MAP3K7 3 (7%) 38 0.289
(1.00)
0.774
(1.00)
0.163
(1.00)
0.337
(1.00)
0.308
(1.00)
0.16
(1.00)
0.156
(1.00)
0.113
(1.00)
OTX1 4 (10%) 37 0.194
(1.00)
0.119
(1.00)
1
(1.00)
1
(1.00)
0.647
(1.00)
0.272
(1.00)
0.365
(1.00)
0.648
(1.00)
THBS1 3 (7%) 38 0.751
(1.00)
1
(1.00)
0.53
(1.00)
0.505
(1.00)
0.198
(1.00)
0.37
(1.00)
0.75
(1.00)
0.772
(1.00)
INTS7 3 (7%) 38 0.755
(1.00)
0.423
(1.00)
0.739
(1.00)
0.937
(1.00)
0.532
(1.00)
0.137
(1.00)
0.101
(1.00)
0.413
(1.00)
ZNF644 3 (7%) 38 0.754
(1.00)
1
(1.00)
0.53
(1.00)
0.503
(1.00)
0.198
(1.00)
0.135
(1.00)
0.749
(1.00)
0.772
(1.00)
NFAT5 3 (7%) 38 0.752
(1.00)
0.574
(1.00)
1
(1.00)
0.504
(1.00)
1
(1.00)
0.284
(1.00)
0.752
(1.00)
1
(1.00)
WHSC1L1 3 (7%) 38 1
(1.00)
0.126
(1.00)
0.738
(1.00)
0.746
(1.00)
0.541
(1.00)
0.477
(1.00)
0.748
(1.00)
0.415
(1.00)
KIAA1211 3 (7%) 38 0.29
(1.00)
0.575
(1.00)
0.532
(1.00)
0.187
(1.00)
0.0845
(1.00)
0.16
(1.00)
0.157
(1.00)
0.0615
(1.00)
NAGPA 3 (7%) 38 0.559
(1.00)
0.287
(1.00)
1
(1.00)
0.503
(1.00)
0.812
(1.00)
0.0195
(1.00)
0.408
(1.00)
1
(1.00)
PPIG 3 (7%) 38 0.29
(1.00)
0.126
(1.00)
SLITRK5 4 (10%) 37 0.394
(1.00)
0.805
(1.00)
1
(1.00)
0.612
(1.00)
1
(1.00)
0.466
(1.00)
1
(1.00)
1
(1.00)
MBD3 3 (7%) 38 0.293
(1.00)
0.777
(1.00)
0.163
(1.00)
0.336
(1.00)
0.0288
(1.00)
0.16
(1.00)
0.059
(1.00)
0.114
(1.00)
FOXP2 5 (12%) 36 0.427
(1.00)
0.838
(1.00)
0.338
(1.00)
0.339
(1.00)
0.842
(1.00)
0.312
(1.00)
0.275
(1.00)
0.107
(1.00)
NAPSA 3 (7%) 38 0.292
(1.00)
0.775
(1.00)
EIF3C 3 (7%) 38 0.482
(1.00)
1
(1.00)
1
(1.00)
0.189
(1.00)
1
(1.00)
0.284
(1.00)
0.751
(1.00)
1
(1.00)
GTF2F1 3 (7%) 38 0.753
(1.00)
0.573
(1.00)
0.528
(1.00)
0.504
(1.00)
1
(1.00)
0.137
(1.00)
0.753
(1.00)
0.774
(1.00)
CCKAR 3 (7%) 38 0.751
(1.00)
0.775
(1.00)
MMP14 3 (7%) 38 0.751
(1.00)
1
(1.00)
0.164
(1.00)
0.338
(1.00)
0.199
(1.00)
0.0756
(1.00)
0.751
(1.00)
0.113
(1.00)
ATM 3 (7%) 38 1
(1.00)
0.424
(1.00)
CCDC28B 3 (7%) 38 0.188
(1.00)
0.286
(1.00)
0.74
(1.00)
0.586
(1.00)
0.81
(1.00)
0.667
(1.00)
0.409
(1.00)
0.414
(1.00)
IFFO1 3 (7%) 38 1
(1.00)
0.288
(1.00)
1
(1.00)
0.0641
(1.00)
0.811
(1.00)
0.284
(1.00)
0.406
(1.00)
1
(1.00)
TWISTNB 3 (7%) 38 0.75
(1.00)
0.573
(1.00)
1
(1.00)
0.706
(1.00)
1
(1.00)
0.137
(1.00)
0.749
(1.00)
0.774
(1.00)
RASGRF2 3 (7%) 38 0.651
(1.00)
0.425
(1.00)
0.74
(1.00)
0.94
(1.00)
0.537
(1.00)
0.368
(1.00)
0.102
(1.00)
0.413
(1.00)
SPAG9 3 (7%) 38 0.753
(1.00)
1
(1.00)
1
(1.00)
0.503
(1.00)
1
(1.00)
0.284
(1.00)
0.751
(1.00)
1
(1.00)
SMCR7 3 (7%) 38 0.751
(1.00)
1
(1.00)
0.742
(1.00)
0.0276
(1.00)
0.308
(1.00)
0.367
(1.00)
0.1
(1.00)
0.413
(1.00)
PSAT1 4 (10%) 37 0.61
(1.00)
0.392
(1.00)
1
(1.00)
0.502
(1.00)
0.812
(1.00)
0.934
(1.00)
0.408
(1.00)
1
(1.00)
PDILT 3 (7%) 38 0.481
(1.00)
1
(1.00)
1
(1.00)
0.506
(1.00)
1
(1.00)
0.284
(1.00)
0.406
(1.00)
1
(1.00)
CCDC8 3 (7%) 38 0.292
(1.00)
0.577
(1.00)
1
(1.00)
0.0276
(1.00)
0.306
(1.00)
0.285
(1.00)
0.155
(1.00)
1
(1.00)
HIST1H2BK 3 (7%) 38 0.559
(1.00)
1
(1.00)
0.532
(1.00)
0.189
(1.00)
0.199
(1.00)
1
(1.00)
0.752
(1.00)
0.772
(1.00)
METAP1 3 (7%) 38 0.479
(1.00)
1
(1.00)
0.529
(1.00)
0.506
(1.00)
1
(1.00)
0.368
(1.00)
0.748
(1.00)
0.771
(1.00)
SCRIB 3 (7%) 38 0.754
(1.00)
1
(1.00)
0.163
(1.00)
0.0281
(1.00)
0.0287
(1.00)
0.16
(1.00)
0.0579
(1.00)
0.114
(1.00)
STAU1 3 (7%) 38 0.478
(1.00)
1
(1.00)
0.162
(1.00)
0.0273
(1.00)
0.0295
(1.00)
0.0039
(1.00)
0.0589
(1.00)
0.774
(1.00)
GOLGA6B 3 (7%) 38 1
(1.00)
0.286
(1.00)
0.738
(1.00)
0.584
(1.00)
0.812
(1.00)
0.2
(1.00)
0.404
(1.00)
0.416
(1.00)
IRS4 4 (10%) 37 0.394
(1.00)
0.659
(1.00)
0.47
(1.00)
0.135
(1.00)
0.168
(1.00)
0.497
(1.00)
0.274
(1.00)
0.514
(1.00)
PDZD2 4 (10%) 37 1
(1.00)
1
(1.00)
0.471
(1.00)
0.848
(1.00)
0.84
(1.00)
0.226
(1.00)
0.272
(1.00)
0.517
(1.00)
CCDC135 3 (7%) 38 0.865
(1.00)
1
(1.00)
0.738
(1.00)
0.0629
(1.00)
1
(1.00)
0.37
(1.00)
0.751
(1.00)
0.773
(1.00)
CEP72 3 (7%) 38 0.752
(1.00)
1
(1.00)
1
(1.00)
0.186
(1.00)
1
(1.00)
0.284
(1.00)
0.406
(1.00)
1
(1.00)
SMARCA2 3 (7%) 38 0.289
(1.00)
0.573
(1.00)
0.0234
(1.00)
0.0282
(1.00)
0.308
(1.00)
0.0353
(1.00)
0.159
(1.00)
0.0616
(1.00)
UBXN6 3 (7%) 38 0.347
(1.00)
1
(1.00)
1
(1.00)
0.508
(1.00)
0.811
(1.00)
0.283
(1.00)
0.405
(1.00)
1
(1.00)
YIPF2 3 (7%) 38 1
(1.00)
0.286
(1.00)
0.0985
(1.00)
0.0881
(1.00)
0.809
(1.00)
0.2
(1.00)
0.406
(1.00)
0.417
(1.00)
GNAS 7 (17%) 34 0.584
(1.00)
0.312
(1.00)
0.261
(1.00)
0.325
(1.00)
0.107
(1.00)
0.404
(1.00)
0.625
(1.00)
0.542
(1.00)
TGFBR2 3 (7%) 38 0.289
(1.00)
0.576
(1.00)
0.532
(1.00)
0.506
(1.00)
0.0845
(1.00)
0.369
(1.00)
0.157
(1.00)
0.772
(1.00)
PARVB 3 (7%) 38 0.562
(1.00)
PTPN21 3 (7%) 38 0.65
(1.00)
0.287
(1.00)
0.0978
(1.00)
0.0871
(1.00)
0.0593
(1.00)
0.00138
(1.00)
0.102
(1.00)
0.416
(1.00)
TSC22D1 3 (7%) 38 1
(1.00)
0.286
(1.00)
0.739
(1.00)
0.585
(1.00)
0.81
(1.00)
0.2
(1.00)
0.408
(1.00)
0.415
(1.00)
ZNF184 4 (10%) 37 0.736
(1.00)
0.12
(1.00)
0.34
(1.00)
0.313
(1.00)
0.646
(1.00)
0.27
(1.00)
0.363
(1.00)
0.65
(1.00)
ANK3 5 (12%) 36 0.367
(1.00)
1
(1.00)
0.629
(1.00)
0.612
(1.00)
0.841
(1.00)
0.462
(1.00)
0.484
(1.00)
1
(1.00)
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
KRAS MUTATED 8 10 8 4
KRAS WILD-TYPE 2 6 1 2
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
KRAS MUTATED 15 5 9
KRAS WILD-TYPE 4 3 4
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
KRAS MUTATED 11 9 3
KRAS WILD-TYPE 5 4 2
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
KRAS MUTATED 8 4 2 3 4 2
KRAS WILD-TYPE 1 0 2 2 4 2
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
KRAS MUTATED 10 6 2 5
KRAS WILD-TYPE 4 3 0 4
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
KRAS MUTATED 4 3 4 3 7 2
KRAS WILD-TYPE 1 3 2 1 4 0
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
KRAS MUTATED 13 4 6
KRAS WILD-TYPE 4 2 5
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
KRAS MUTATED 12 6 5
KRAS WILD-TYPE 5 4 2
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TP53 MUTATED 8 7 5 4
TP53 WILD-TYPE 2 9 4 2
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TP53 MUTATED 13 3 7
TP53 WILD-TYPE 6 5 6
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TP53 MUTATED 8 8 3
TP53 WILD-TYPE 8 5 2
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TP53 MUTATED 5 2 2 2 5 3
TP53 WILD-TYPE 4 2 2 3 3 1
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TP53 MUTATED 9 4 2 4
TP53 WILD-TYPE 5 5 0 5
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TP53 MUTATED 4 1 4 4 5 1
TP53 WILD-TYPE 1 5 2 0 6 1
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TP53 MUTATED 12 2 5
TP53 WILD-TYPE 5 4 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TP53 MUTATED 10 5 4
TP53 WILD-TYPE 7 5 3
'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
C19ORF55 MUTATED 2 3 1 1
C19ORF55 WILD-TYPE 8 13 8 5
'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
C19ORF55 MUTATED 5 0 2
C19ORF55 WILD-TYPE 14 8 11
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
C19ORF55 MUTATED 2 3 1
C19ORF55 WILD-TYPE 14 10 4
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
C19ORF55 MUTATED 1 2 1 2 0 0
C19ORF55 WILD-TYPE 8 2 3 3 8 4
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
C19ORF55 MUTATED 3 1 0 2
C19ORF55 WILD-TYPE 11 8 2 7
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
C19ORF55 MUTATED 1 0 2 0 2 1
C19ORF55 WILD-TYPE 4 6 4 4 9 1
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
C19ORF55 MUTATED 3 1 2
C19ORF55 WILD-TYPE 14 5 9
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
C19ORF55 MUTATED 3 1 2
C19ORF55 WILD-TYPE 14 9 5
'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
B4GALT2 MUTATED 3 1 1 0
B4GALT2 WILD-TYPE 7 15 8 6
'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
B4GALT2 MUTATED 2 1 2
B4GALT2 WILD-TYPE 17 7 11
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
B4GALT2 MUTATED 2 3 0
B4GALT2 WILD-TYPE 14 10 5
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
B4GALT2 MUTATED 1 1 0 2 1 0
B4GALT2 WILD-TYPE 8 3 4 3 7 4
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
B4GALT2 MUTATED 3 1 0 1
B4GALT2 WILD-TYPE 11 8 2 8
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
B4GALT2 MUTATED 1 1 1 0 2 0
B4GALT2 WILD-TYPE 4 5 5 4 9 2
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
B4GALT2 MUTATED 3 1 1
B4GALT2 WILD-TYPE 14 5 10
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
B4GALT2 MUTATED 3 1 1
B4GALT2 WILD-TYPE 14 9 6
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00958 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CDKN2A MUTATED 4 0 3 0
CDKN2A WILD-TYPE 6 16 6 6

Figure S1.  Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CDKN2A MUTATED 6 1 0
CDKN2A WILD-TYPE 13 7 13
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 13 10 5
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CDKN2A MUTATED 3 1 0 0 2 0
CDKN2A WILD-TYPE 6 3 4 5 6 4
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CDKN2A MUTATED 3 3 0 0
CDKN2A WILD-TYPE 11 6 2 9
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CDKN2A MUTATED 3 1 0 2 0 0
CDKN2A WILD-TYPE 2 5 6 2 11 2

Figure S2.  Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CDKN2A MUTATED 5 1 0
CDKN2A WILD-TYPE 12 5 11
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 14 7 7
'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
NFIL3 MUTATED 0 3 2 1
NFIL3 WILD-TYPE 10 13 7 5
'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NFIL3 MUTATED 4 0 2
NFIL3 WILD-TYPE 15 8 11
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
NFIL3 MUTATED 3 2 1
NFIL3 WILD-TYPE 13 11 4
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
NFIL3 MUTATED 2 1 0 2 0 1
NFIL3 WILD-TYPE 7 3 4 3 8 3
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
NFIL3 MUTATED 3 1 1 1
NFIL3 WILD-TYPE 11 8 1 8
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
NFIL3 MUTATED 1 0 2 0 2 1
NFIL3 WILD-TYPE 4 6 4 4 9 1
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
NFIL3 MUTATED 3 1 2
NFIL3 WILD-TYPE 14 5 9
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
NFIL3 MUTATED 3 1 2
NFIL3 WILD-TYPE 14 9 5
'OTOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
OTOF MUTATED 2 6 0 1
OTOF WILD-TYPE 8 10 9 5
'OTOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OTOF MUTATED 3 3 3
OTOF WILD-TYPE 16 5 10
'OTOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
OTOF MUTATED 3 4 1
OTOF WILD-TYPE 13 9 4
'OTOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
OTOF MUTATED 1 1 1 2 2 1
OTOF WILD-TYPE 8 3 3 3 6 3
'OTOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
OTOF MUTATED 2 3 0 3
OTOF WILD-TYPE 12 6 2 6
'OTOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
OTOF MUTATED 0 1 2 1 3 1
OTOF WILD-TYPE 5 5 4 3 8 1
'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
OTOF MUTATED 3 1 4
OTOF WILD-TYPE 14 5 7
'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
OTOF MUTATED 3 3 2
OTOF WILD-TYPE 14 7 5
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
IRS1 MUTATED 1 2 1 2
IRS1 WILD-TYPE 9 14 8 4
'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IRS1 MUTATED 3 2 1
IRS1 WILD-TYPE 16 6 12
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
IRS1 MUTATED 1 4 1
IRS1 WILD-TYPE 15 9 4
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
IRS1 MUTATED 0 2 1 1 2 0
IRS1 WILD-TYPE 9 2 3 4 6 4
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
IRS1 MUTATED 1 4 1 0
IRS1 WILD-TYPE 13 5 1 9

Figure S3.  Get High-res Image Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
IRS1 MUTATED 0 2 1 1 1 1
IRS1 WILD-TYPE 5 4 5 3 10 1
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
IRS1 MUTATED 2 3 1
IRS1 WILD-TYPE 15 3 10
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
IRS1 MUTATED 2 3 1
IRS1 WILD-TYPE 15 7 6
'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GAS2L2 MUTATED 2 3 0 1
GAS2L2 WILD-TYPE 8 13 9 5
'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GAS2L2 MUTATED 4 1 1
GAS2L2 WILD-TYPE 15 7 12
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GAS2L2 MUTATED 2 2 0
GAS2L2 WILD-TYPE 14 11 5
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GAS2L2 MUTATED 1 1 0 1 1 0
GAS2L2 WILD-TYPE 8 3 4 4 7 4
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GAS2L2 MUTATED 1 2 0 1
GAS2L2 WILD-TYPE 13 7 2 8
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GAS2L2 MUTATED 1 2 0 0 0 1
GAS2L2 WILD-TYPE 4 4 6 4 11 1
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GAS2L2 MUTATED 1 1 2
GAS2L2 WILD-TYPE 16 5 9
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GAS2L2 MUTATED 1 2 1
GAS2L2 WILD-TYPE 16 8 6
'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
RBM10 MUTATED 3 2 1 0
RBM10 WILD-TYPE 7 14 8 6
'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM10 MUTATED 4 2 0
RBM10 WILD-TYPE 15 6 13
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
RBM10 MUTATED 1 4 0
RBM10 WILD-TYPE 15 9 5
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
RBM10 MUTATED 0 2 0 1 2 0
RBM10 WILD-TYPE 9 2 4 4 6 4
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
RBM10 MUTATED 1 4 0 0
RBM10 WILD-TYPE 13 5 2 9
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
RBM10 MUTATED 0 3 0 0 1 1
RBM10 WILD-TYPE 5 3 6 4 10 1
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
RBM10 MUTATED 1 3 1
RBM10 WILD-TYPE 16 3 10

Figure S4.  Get High-res Image Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
RBM10 MUTATED 1 4 0
RBM10 WILD-TYPE 16 6 7

Figure S5.  Get High-res Image Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
APP MUTATED 0 5 0 1
APP WILD-TYPE 10 11 9 5
'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
APP MUTATED 2 1 3
APP WILD-TYPE 17 7 10
'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
APP MUTATED 3 1 1
APP WILD-TYPE 13 12 4
'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
APP MUTATED 2 1 1 0 0 1
APP WILD-TYPE 7 3 3 5 8 3
'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
APP MUTATED 1 1 1 2
APP WILD-TYPE 13 8 1 7
'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
APP MUTATED 1 0 1 0 2 1
APP WILD-TYPE 4 6 5 4 9 1
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
APP MUTATED 2 1 2
APP WILD-TYPE 15 5 9
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
APP MUTATED 3 1 1
APP WILD-TYPE 14 9 6
'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
IPP MUTATED 1 4 0 0
IPP WILD-TYPE 9 12 9 6
'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IPP MUTATED 2 0 3
IPP WILD-TYPE 17 8 10
'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
IPP MUTATED 1 2 2
IPP WILD-TYPE 15 11 3
'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
IPP MUTATED 0 1 2 0 1 1
IPP WILD-TYPE 9 3 2 5 7 3
'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
IPP MUTATED 1 1 0 3
IPP WILD-TYPE 13 8 2 6
'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
IPP MUTATED 0 0 2 1 1 1
IPP WILD-TYPE 5 6 4 3 10 1
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
IPP MUTATED 1 1 3
IPP WILD-TYPE 16 5 8
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
IPP MUTATED 1 2 2
IPP WILD-TYPE 16 8 5
'MAMLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MAMLD1 MUTATED 0 4 2 1
MAMLD1 WILD-TYPE 10 12 7 5
'MAMLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MAMLD1 MUTATED 4 1 2
MAMLD1 WILD-TYPE 15 7 11
'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MAMLD1 MUTATED 4 3 0
MAMLD1 WILD-TYPE 12 10 5
'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MAMLD1 MUTATED 1 2 0 2 1 1
MAMLD1 WILD-TYPE 8 2 4 3 7 3
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MAMLD1 MUTATED 2 3 0 2
MAMLD1 WILD-TYPE 12 6 2 7
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0837 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MAMLD1 MUTATED 1 2 0 0 2 2
MAMLD1 WILD-TYPE 4 4 6 4 9 0
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MAMLD1 MUTATED 2 3 2
MAMLD1 WILD-TYPE 15 3 9
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MAMLD1 MUTATED 4 2 1
MAMLD1 WILD-TYPE 13 8 6
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ARHGAP18 MUTATED 0 2 2 0
ARHGAP18 WILD-TYPE 10 14 7 6
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 17 6 13
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 14 11 5
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ARHGAP18 MUTATED 1 0 0 1 2 0
ARHGAP18 WILD-TYPE 8 4 4 4 6 4
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ARHGAP18 MUTATED 2 2 0 0
ARHGAP18 WILD-TYPE 12 7 2 9
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ARHGAP18 MUTATED 1 2 0 0 1 0
ARHGAP18 WILD-TYPE 4 4 6 4 10 2
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ARHGAP18 MUTATED 2 1 1
ARHGAP18 WILD-TYPE 15 5 10
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 15 8 7
'PHF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PHF8 MUTATED 1 1 2 1
PHF8 WILD-TYPE 9 15 7 5
'PHF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S114.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PHF8 MUTATED 4 1 0
PHF8 WILD-TYPE 15 7 13
'PHF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PHF8 MUTATED 4 0 0
PHF8 WILD-TYPE 12 13 5
'PHF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PHF8 MUTATED 3 0 0 1 0 0
PHF8 WILD-TYPE 6 4 4 4 8 4
'PHF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PHF8 MUTATED 4 0 0 0
PHF8 WILD-TYPE 10 9 2 9
'PHF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PHF8 MUTATED 2 0 0 0 2 0
PHF8 WILD-TYPE 3 6 6 4 9 2
'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PHF8 MUTATED 4 0 0
PHF8 WILD-TYPE 13 6 11
'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PHF8 MUTATED 4 0 0
PHF8 WILD-TYPE 13 10 7
'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
THBS4 MUTATED 1 4 1 0
THBS4 WILD-TYPE 9 12 8 6
'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
THBS4 MUTATED 3 1 2
THBS4 WILD-TYPE 16 7 11
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
THBS4 MUTATED 3 2 1
THBS4 WILD-TYPE 13 11 4
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
THBS4 MUTATED 2 1 1 1 1 0
THBS4 WILD-TYPE 7 3 3 4 7 4
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
THBS4 MUTATED 2 2 0 2
THBS4 WILD-TYPE 12 7 2 7
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
THBS4 MUTATED 1 1 1 0 2 1
THBS4 WILD-TYPE 4 5 5 4 9 1
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
THBS4 MUTATED 2 1 3
THBS4 WILD-TYPE 15 5 8
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
THBS4 MUTATED 3 2 1
THBS4 WILD-TYPE 14 8 6
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SMAD4 MUTATED 1 2 3 1
SMAD4 WILD-TYPE 9 14 6 5
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SMAD4 MUTATED 5 1 1
SMAD4 WILD-TYPE 14 7 12
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SMAD4 MUTATED 2 4 0
SMAD4 WILD-TYPE 14 9 5
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SMAD4 MUTATED 1 3 0 0 1 1
SMAD4 WILD-TYPE 8 1 4 5 7 3
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SMAD4 MUTATED 2 3 0 1
SMAD4 WILD-TYPE 12 6 2 8
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SMAD4 MUTATED 1 1 0 1 1 2
SMAD4 WILD-TYPE 4 5 6 3 10 0
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SMAD4 MUTATED 3 3 0
SMAD4 WILD-TYPE 14 3 11

Figure S6.  Get High-res Image Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SMAD4 MUTATED 3 3 0
SMAD4 WILD-TYPE 14 7 7
'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PTPRF MUTATED 3 3 0 1
PTPRF WILD-TYPE 7 13 9 5
'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PTPRF MUTATED 5 1 1
PTPRF WILD-TYPE 14 7 12
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PTPRF MUTATED 2 4 1
PTPRF WILD-TYPE 14 9 4
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PTPRF MUTATED 2 1 1 0 3 0
PTPRF WILD-TYPE 7 3 3 5 5 4
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PTPRF MUTATED 3 3 1 0
PTPRF WILD-TYPE 11 6 1 9
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PTPRF MUTATED 2 1 1 2 0 1
PTPRF WILD-TYPE 3 5 5 2 11 1
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PTPRF MUTATED 4 1 2
PTPRF WILD-TYPE 13 5 9
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PTPRF MUTATED 2 4 1
PTPRF WILD-TYPE 15 6 6
'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MED12 MUTATED 0 4 1 1
MED12 WILD-TYPE 10 12 8 5
'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MED12 MUTATED 2 0 4
MED12 WILD-TYPE 17 8 9
'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MED12 MUTATED 3 1 2
MED12 WILD-TYPE 13 12 3
'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MED12 MUTATED 2 1 1 1 0 1
MED12 WILD-TYPE 7 3 3 4 8 3
'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MED12 MUTATED 2 1 2 1
MED12 WILD-TYPE 12 8 0 8
'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MED12 MUTATED 1 1 2 0 1 1
MED12 WILD-TYPE 4 5 4 4 10 1
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MED12 MUTATED 2 1 3
MED12 WILD-TYPE 15 5 8
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MED12 MUTATED 2 1 3
MED12 WILD-TYPE 15 9 4
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
BMP2K MUTATED 1 3 0 0
BMP2K WILD-TYPE 9 13 9 6
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BMP2K MUTATED 2 0 2
BMP2K WILD-TYPE 17 8 11
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
BMP2K MUTATED 1 2 1
BMP2K WILD-TYPE 15 11 4
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
BMP2K MUTATED 0 1 0 0 1 2
BMP2K WILD-TYPE 9 3 4 5 7 2
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
BMP2K MUTATED 1 1 1 1
BMP2K WILD-TYPE 13 8 1 8
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
BMP2K MUTATED 0 0 1 1 1 1
BMP2K WILD-TYPE 5 6 5 3 10 1
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
BMP2K MUTATED 2 1 1
BMP2K WILD-TYPE 15 5 10
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
BMP2K MUTATED 1 2 1
BMP2K WILD-TYPE 16 8 6
'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ZMYM5 MUTATED 0 2 2 0
ZMYM5 WILD-TYPE 10 14 7 6
'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZMYM5 MUTATED 3 0 1
ZMYM5 WILD-TYPE 16 8 12
'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ZMYM5 MUTATED 3 1 0
ZMYM5 WILD-TYPE 13 12 5
'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ZMYM5 MUTATED 1 1 0 1 0 1
ZMYM5 WILD-TYPE 8 3 4 4 8 3
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ZMYM5 MUTATED 2 1 0 1
ZMYM5 WILD-TYPE 12 8 2 8
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ZMYM5 MUTATED 0 0 0 0 3 1
ZMYM5 WILD-TYPE 5 6 6 4 8 1
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ZMYM5 MUTATED 3 1 0
ZMYM5 WILD-TYPE 14 5 11
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ZMYM5 MUTATED 3 1 0
ZMYM5 WILD-TYPE 14 9 7
'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SYT15 MUTATED 1 2 0 1
SYT15 WILD-TYPE 9 14 9 5
'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SYT15 MUTATED 3 1 0
SYT15 WILD-TYPE 16 7 13
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SYT15 MUTATED 2 2 0
SYT15 WILD-TYPE 14 11 5
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SYT15 MUTATED 1 1 0 1 1 0
SYT15 WILD-TYPE 8 3 4 4 7 4
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SYT15 MUTATED 2 2 0 0
SYT15 WILD-TYPE 12 7 2 9
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SYT15 MUTATED 0 1 0 0 2 1
SYT15 WILD-TYPE 5 5 6 4 9 1
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SYT15 MUTATED 2 2 0
SYT15 WILD-TYPE 15 4 11
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SYT15 MUTATED 2 2 0
SYT15 WILD-TYPE 15 8 7
'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PLAU MUTATED 0 4 0 0
PLAU WILD-TYPE 10 12 9 6
'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PLAU MUTATED 1 1 2
PLAU WILD-TYPE 18 7 11
'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PLAU MUTATED 1 2 1
PLAU WILD-TYPE 15 11 4
'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PLAU MUTATED 0 1 1 0 1 1
PLAU WILD-TYPE 9 3 3 5 7 3
'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PLAU MUTATED 0 2 0 2
PLAU WILD-TYPE 14 7 2 7
'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PLAU MUTATED 0 1 1 0 1 1
PLAU WILD-TYPE 5 5 5 4 10 1
'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PLAU MUTATED 0 2 2
PLAU WILD-TYPE 17 4 9

Figure S7.  Get High-res Image Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PLAU MUTATED 1 2 1
PLAU WILD-TYPE 16 8 6
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MEPCE MUTATED 1 2 1 0
MEPCE WILD-TYPE 9 14 8 6
'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MEPCE MUTATED 3 0 1
MEPCE WILD-TYPE 16 8 12
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MEPCE MUTATED 3 1 0
MEPCE WILD-TYPE 13 12 5
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MEPCE MUTATED 2 1 0 1 0 0
MEPCE WILD-TYPE 7 3 4 4 8 4
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MEPCE MUTATED 2 1 0 1
MEPCE WILD-TYPE 12 8 2 8
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MEPCE MUTATED 0 0 0 0 3 1
MEPCE WILD-TYPE 5 6 6 4 8 1
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MEPCE MUTATED 2 1 1
MEPCE WILD-TYPE 15 5 10
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MEPCE MUTATED 3 1 0
MEPCE WILD-TYPE 14 9 7
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ZMIZ1 MUTATED 0 4 0 1
ZMIZ1 WILD-TYPE 10 12 9 5
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZMIZ1 MUTATED 2 1 2
ZMIZ1 WILD-TYPE 17 7 11
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ZMIZ1 MUTATED 3 2 0
ZMIZ1 WILD-TYPE 13 11 5
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ZMIZ1 MUTATED 2 1 0 0 1 1
ZMIZ1 WILD-TYPE 7 3 4 5 7 3
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ZMIZ1 MUTATED 1 2 0 2
ZMIZ1 WILD-TYPE 13 7 2 7
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ZMIZ1 MUTATED 1 1 0 0 2 1
ZMIZ1 WILD-TYPE 4 5 6 4 9 1
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ZMIZ1 MUTATED 2 1 2
ZMIZ1 WILD-TYPE 15 5 9
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ZMIZ1 MUTATED 3 2 0
ZMIZ1 WILD-TYPE 14 8 7
'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SLC39A5 MUTATED 1 3 0 0
SLC39A5 WILD-TYPE 9 13 9 6
'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SLC39A5 MUTATED 1 0 3
SLC39A5 WILD-TYPE 18 8 10
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SLC39A5 MUTATED 2 1 1
SLC39A5 WILD-TYPE 14 12 4
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SLC39A5 MUTATED 0 0 1 0 1 2
SLC39A5 WILD-TYPE 9 4 3 5 7 2
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SLC39A5 MUTATED 0 1 1 2
SLC39A5 WILD-TYPE 14 8 1 7
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SLC39A5 MUTATED 0 0 1 1 2 0
SLC39A5 WILD-TYPE 5 6 5 3 9 2
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SLC39A5 MUTATED 2 0 2
SLC39A5 WILD-TYPE 15 6 9
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SLC39A5 MUTATED 2 1 1
SLC39A5 WILD-TYPE 15 9 6
'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GUCY2F MUTATED 1 4 0 0
GUCY2F WILD-TYPE 9 12 9 6
'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GUCY2F MUTATED 2 0 3
GUCY2F WILD-TYPE 17 8 10
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GUCY2F MUTATED 2 2 1
GUCY2F WILD-TYPE 14 11 4
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GUCY2F MUTATED 1 1 0 0 1 2
GUCY2F WILD-TYPE 8 3 4 5 7 2
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GUCY2F MUTATED 0 2 1 2
GUCY2F WILD-TYPE 14 7 1 7
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GUCY2F MUTATED 0 0 1 1 2 1
GUCY2F WILD-TYPE 5 6 5 3 9 1
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GUCY2F MUTATED 1 1 3
GUCY2F WILD-TYPE 16 5 8
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GUCY2F MUTATED 2 2 1
GUCY2F WILD-TYPE 15 8 6
'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
EDC4 MUTATED 2 2 1 0
EDC4 WILD-TYPE 8 14 8 6
'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EDC4 MUTATED 4 0 1
EDC4 WILD-TYPE 15 8 12
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
EDC4 MUTATED 2 2 0
EDC4 WILD-TYPE 14 11 5
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
EDC4 MUTATED 1 1 0 0 1 1
EDC4 WILD-TYPE 8 3 4 5 7 3
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
EDC4 MUTATED 1 2 0 1
EDC4 WILD-TYPE 13 7 2 8
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
EDC4 MUTATED 1 0 0 1 1 1
EDC4 WILD-TYPE 4 6 6 3 10 1
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
EDC4 MUTATED 2 1 1
EDC4 WILD-TYPE 15 5 10
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
EDC4 MUTATED 2 2 0
EDC4 WILD-TYPE 15 8 7
'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SEH1L MUTATED 1 2 0 0
SEH1L WILD-TYPE 9 14 9 6
'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SEH1L MUTATED 1 1 1
SEH1L WILD-TYPE 18 7 12
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SEH1L MUTATED 0 3 0
SEH1L WILD-TYPE 16 10 5
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SEH1L MUTATED 0 1 0 1 1 0
SEH1L WILD-TYPE 9 3 4 4 7 4
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SEH1L MUTATED 0 2 0 1
SEH1L WILD-TYPE 14 7 2 8
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SEH1L MUTATED 0 1 1 0 0 1
SEH1L WILD-TYPE 5 5 5 4 11 1
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SEH1L MUTATED 0 2 1
SEH1L WILD-TYPE 17 4 10
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SEH1L MUTATED 0 2 1
SEH1L WILD-TYPE 17 8 6
'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SLC4A3 MUTATED 1 1 1 0
SLC4A3 WILD-TYPE 9 15 8 6
'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S234.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SLC4A3 MUTATED 2 1 0
SLC4A3 WILD-TYPE 17 7 13
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SLC4A3 MUTATED 1 2 0
SLC4A3 WILD-TYPE 15 11 5
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SLC4A3 MUTATED 0 1 0 1 1 0
SLC4A3 WILD-TYPE 9 3 4 4 7 4
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SLC4A3 MUTATED 1 2 0 0
SLC4A3 WILD-TYPE 13 7 2 9
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SLC4A3 MUTATED 0 1 0 0 1 1
SLC4A3 WILD-TYPE 5 5 6 4 10 1
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SLC4A3 MUTATED 1 2 0
SLC4A3 WILD-TYPE 16 4 11
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SLC4A3 MUTATED 1 2 0
SLC4A3 WILD-TYPE 16 8 7
'CD99L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CD99L2 MUTATED 2 2 0 0
CD99L2 WILD-TYPE 8 14 9 6
'CD99L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CD99L2 MUTATED 1 1 2
CD99L2 WILD-TYPE 18 7 11
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CD99L2 MUTATED 1 2 1
CD99L2 WILD-TYPE 15 11 4
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CD99L2 MUTATED 0 0 1 0 2 1
CD99L2 WILD-TYPE 9 4 3 5 6 3
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CD99L2 MUTATED 1 1 1 1
CD99L2 WILD-TYPE 13 8 1 8
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CD99L2 MUTATED 0 0 1 2 1 0
CD99L2 WILD-TYPE 5 6 5 2 10 2
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CD99L2 MUTATED 2 0 2
CD99L2 WILD-TYPE 15 6 9
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CD99L2 MUTATED 1 2 1
CD99L2 WILD-TYPE 16 8 6
'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SBNO1 MUTATED 1 0 1 2
SBNO1 WILD-TYPE 9 16 8 4
'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SBNO1 MUTATED 4 0 0
SBNO1 WILD-TYPE 15 8 13
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SBNO1 MUTATED 3 1 0
SBNO1 WILD-TYPE 13 12 5
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SBNO1 MUTATED 2 1 0 1 0 0
SBNO1 WILD-TYPE 7 3 4 4 8 4
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SBNO1 MUTATED 3 1 0 0
SBNO1 WILD-TYPE 11 8 2 9
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SBNO1 MUTATED 1 0 0 0 2 1
SBNO1 WILD-TYPE 4 6 6 4 9 1
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SBNO1 MUTATED 3 1 0
SBNO1 WILD-TYPE 14 5 11
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SBNO1 MUTATED 4 0 0
SBNO1 WILD-TYPE 13 10 7
'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
NPNT MUTATED 0 2 1 0
NPNT WILD-TYPE 10 14 8 6
'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NPNT MUTATED 0 0 3
NPNT WILD-TYPE 19 8 10

Figure S8.  Get High-res Image Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
NPNT MUTATED 2 0 1
NPNT WILD-TYPE 14 13 4
'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
NPNT MUTATED 1 0 1 0 0 1
NPNT WILD-TYPE 8 4 3 5 8 3
'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
NPNT MUTATED 1 0 0 2
NPNT WILD-TYPE 13 9 2 7
'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
NPNT MUTATED 1 0 1 0 1 0
NPNT WILD-TYPE 4 6 5 4 10 2
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
NPNT MUTATED 1 0 2
NPNT WILD-TYPE 16 6 9
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
NPNT MUTATED 2 0 1
NPNT WILD-TYPE 15 10 6
'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TMEM175 MUTATED 3 2 0 0
TMEM175 WILD-TYPE 7 14 9 6
'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TMEM175 MUTATED 3 1 1
TMEM175 WILD-TYPE 16 7 12
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TMEM175 MUTATED 2 3 0
TMEM175 WILD-TYPE 14 10 5
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TMEM175 MUTATED 1 1 0 1 2 0
TMEM175 WILD-TYPE 8 3 4 4 6 4
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TMEM175 MUTATED 2 2 0 1
TMEM175 WILD-TYPE 12 7 2 8
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TMEM175 MUTATED 0 0 0 2 2 1
TMEM175 WILD-TYPE 5 6 6 2 9 1
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TMEM175 MUTATED 3 1 1
TMEM175 WILD-TYPE 14 5 10
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TMEM175 MUTATED 2 3 0
TMEM175 WILD-TYPE 15 7 7
'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
IRX4 MUTATED 0 2 2 0
IRX4 WILD-TYPE 10 14 7 6
'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IRX4 MUTATED 1 0 3
IRX4 WILD-TYPE 18 8 10
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
IRX4 MUTATED 2 0 2
IRX4 WILD-TYPE 14 13 3
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
IRX4 MUTATED 2 0 2 0 0 0
IRX4 WILD-TYPE 7 4 2 5 8 4
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
IRX4 MUTATED 2 0 1 1
IRX4 WILD-TYPE 12 9 1 8
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
IRX4 MUTATED 1 0 2 0 1 0
IRX4 WILD-TYPE 4 6 4 4 10 2
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
IRX4 MUTATED 2 0 2
IRX4 WILD-TYPE 15 6 9
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
IRX4 MUTATED 2 0 2
IRX4 WILD-TYPE 15 10 5
'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CLCC1 MUTATED 0 3 0 0
CLCC1 WILD-TYPE 10 13 9 6
'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CLCC1 MUTATED 0 1 2
CLCC1 WILD-TYPE 19 7 11
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CLCC1 MUTATED 1 1 1
CLCC1 WILD-TYPE 15 12 4
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CLCC1 MUTATED 1 0 1 0 1 0
CLCC1 WILD-TYPE 8 4 3 5 7 4
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CLCC1 MUTATED 0 1 1 1
CLCC1 WILD-TYPE 14 8 1 8
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CLCC1 MUTATED 0 1 1 0 1 0
CLCC1 WILD-TYPE 5 5 5 4 10 2
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CLCC1 MUTATED 0 1 2
CLCC1 WILD-TYPE 17 5 9
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CLCC1 MUTATED 1 1 1
CLCC1 WILD-TYPE 16 9 6
'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
BTNL8 MUTATED 0 2 1 1
BTNL8 WILD-TYPE 10 14 8 5
'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BTNL8 MUTATED 3 1 0
BTNL8 WILD-TYPE 16 7 13
'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
BTNL8 MUTATED 0 4 0
BTNL8 WILD-TYPE 16 9 5

Figure S9.  Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
BTNL8 MUTATED 0 2 0 0 2 0
BTNL8 WILD-TYPE 9 2 4 5 6 4
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
BTNL8 MUTATED 1 3 0 0
BTNL8 WILD-TYPE 13 6 2 9
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00513 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
BTNL8 MUTATED 0 1 0 1 0 2
BTNL8 WILD-TYPE 5 5 6 3 11 0

Figure S10.  Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
BTNL8 MUTATED 1 2 1
BTNL8 WILD-TYPE 16 4 10
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
BTNL8 MUTATED 1 3 0
BTNL8 WILD-TYPE 16 7 7
'SYNGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SYNGAP1 MUTATED 0 4 0 1
SYNGAP1 WILD-TYPE 10 12 9 5
'SYNGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SYNGAP1 MUTATED 2 1 2
SYNGAP1 WILD-TYPE 17 7 11
'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SYNGAP1 MUTATED 2 3 0
SYNGAP1 WILD-TYPE 14 10 5
'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SYNGAP1 MUTATED 2 1 0 1 1 0
SYNGAP1 WILD-TYPE 7 3 4 4 7 4
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SYNGAP1 MUTATED 1 2 0 2
SYNGAP1 WILD-TYPE 13 7 2 7
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SYNGAP1 MUTATED 0 1 1 0 2 1
SYNGAP1 WILD-TYPE 5 5 5 4 9 1
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SYNGAP1 MUTATED 1 2 2
SYNGAP1 WILD-TYPE 16 4 9
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SYNGAP1 MUTATED 2 2 1
SYNGAP1 WILD-TYPE 15 8 6
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
F8 MUTATED 0 1 3 0
F8 WILD-TYPE 10 15 6 6
'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
F8 MUTATED 4 0 0
F8 WILD-TYPE 15 8 13
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
F8 MUTATED 2 2 0
F8 WILD-TYPE 14 11 5
'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
F8 MUTATED 2 2 0 0 0 0
F8 WILD-TYPE 7 2 4 5 8 4
'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
F8 MUTATED 2 2 0 0
F8 WILD-TYPE 12 7 2 9
'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
F8 MUTATED 2 1 0 0 0 1
F8 WILD-TYPE 3 5 6 4 11 1
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
F8 MUTATED 2 2 0
F8 WILD-TYPE 15 4 11
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
F8 MUTATED 2 2 0
F8 WILD-TYPE 15 8 7
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SORBS2 MUTATED 0 4 0 2
SORBS2 WILD-TYPE 10 12 9 4
'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SORBS2 MUTATED 2 0 4
SORBS2 WILD-TYPE 17 8 9
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SORBS2 MUTATED 3 1 1
SORBS2 WILD-TYPE 13 12 4
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SORBS2 MUTATED 2 1 1 1 0 0
SORBS2 WILD-TYPE 7 3 3 4 8 4
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SORBS2 MUTATED 1 1 0 3
SORBS2 WILD-TYPE 13 8 2 6
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SORBS2 MUTATED 0 1 1 0 2 1
SORBS2 WILD-TYPE 5 5 5 4 9 1
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SORBS2 MUTATED 1 1 3
SORBS2 WILD-TYPE 16 5 8
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SORBS2 MUTATED 2 1 2
SORBS2 WILD-TYPE 15 9 5
'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
NR4A3 MUTATED 1 2 1 0
NR4A3 WILD-TYPE 9 14 8 6
'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NR4A3 MUTATED 3 0 1
NR4A3 WILD-TYPE 16 8 12
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 13 12 5
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
NR4A3 MUTATED 1 1 0 1 0 1
NR4A3 WILD-TYPE 8 3 4 4 8 3
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
NR4A3 MUTATED 2 1 0 1
NR4A3 WILD-TYPE 12 8 2 8
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
NR4A3 MUTATED 1 0 0 0 2 1
NR4A3 WILD-TYPE 4 6 6 4 9 1
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 14 5 11
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 14 9 7
'ZNF337 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ZNF337 MUTATED 1 1 2 0
ZNF337 WILD-TYPE 9 15 7 6
'ZNF337 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZNF337 MUTATED 3 1 0
ZNF337 WILD-TYPE 16 7 13
'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ZNF337 MUTATED 1 3 0
ZNF337 WILD-TYPE 15 10 5
'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ZNF337 MUTATED 0 2 0 1 1 0
ZNF337 WILD-TYPE 9 2 4 4 7 4
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ZNF337 MUTATED 1 3 0 0
ZNF337 WILD-TYPE 13 6 2 9
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ZNF337 MUTATED 0 2 0 0 1 1
ZNF337 WILD-TYPE 5 4 6 4 10 1
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ZNF337 MUTATED 1 3 0
ZNF337 WILD-TYPE 16 3 11

Figure S11.  Get High-res Image Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ZNF337 MUTATED 1 3 0
ZNF337 WILD-TYPE 16 7 7
'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TAOK2 MUTATED 0 4 0 0
TAOK2 WILD-TYPE 10 12 9 6
'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TAOK2 MUTATED 1 0 3
TAOK2 WILD-TYPE 18 8 10
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TAOK2 MUTATED 0 1 3
TAOK2 WILD-TYPE 16 12 2

Figure S12.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TAOK2 MUTATED 0 1 2 0 0 1
TAOK2 WILD-TYPE 9 3 2 5 8 3

Figure S13.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TAOK2 MUTATED 0 1 2 1
TAOK2 WILD-TYPE 14 8 0 8

Figure S14.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00998 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TAOK2 MUTATED 0 0 3 0 0 1
TAOK2 WILD-TYPE 5 6 3 4 11 1

Figure S15.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TAOK2 MUTATED 0 1 3
TAOK2 WILD-TYPE 17 5 8
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TAOK2 MUTATED 0 1 3
TAOK2 WILD-TYPE 17 9 4

Figure S16.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UNC5A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
UNC5A MUTATED 1 2 1 0
UNC5A WILD-TYPE 9 14 8 6
'UNC5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
UNC5A MUTATED 2 0 2
UNC5A WILD-TYPE 17 8 11
'UNC5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
UNC5A MUTATED 1 1 1
UNC5A WILD-TYPE 15 12 4
'UNC5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
UNC5A MUTATED 1 1 1 0 0 0
UNC5A WILD-TYPE 8 3 3 5 8 4
'UNC5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
UNC5A MUTATED 1 1 0 1
UNC5A WILD-TYPE 13 8 2 8
'UNC5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
UNC5A MUTATED 1 0 1 0 0 1
UNC5A WILD-TYPE 4 6 5 4 11 1
'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
UNC5A MUTATED 1 1 1
UNC5A WILD-TYPE 16 5 10
'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
UNC5A MUTATED 1 1 1
UNC5A WILD-TYPE 16 9 6
'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TNFSF9 MUTATED 0 3 0 1
TNFSF9 WILD-TYPE 10 13 9 5
'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TNFSF9 MUTATED 2 1 1
TNFSF9 WILD-TYPE 17 7 12
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 14 11 5
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TNFSF9 MUTATED 1 1 0 0 1 1
TNFSF9 WILD-TYPE 8 3 4 5 7 3
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TNFSF9 MUTATED 1 2 0 1
TNFSF9 WILD-TYPE 13 7 2 8
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TNFSF9 MUTATED 1 1 0 0 1 1
TNFSF9 WILD-TYPE 4 5 6 4 10 1
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 15 4 11
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 15 8 7
'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TEX2 MUTATED 0 3 1 0
TEX2 WILD-TYPE 10 13 8 6
'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TEX2 MUTATED 1 1 2
TEX2 WILD-TYPE 18 7 11
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TEX2 MUTATED 1 2 1
TEX2 WILD-TYPE 15 11 4
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TEX2 MUTATED 1 1 1 0 1 0
TEX2 WILD-TYPE 8 3 3 5 7 4
'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TEX2 MUTATED 1 2 1 0
TEX2 WILD-TYPE 13 7 1 9
'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TEX2 MUTATED 1 1 1 0 0 1
TEX2 WILD-TYPE 4 5 5 4 11 1
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TEX2 MUTATED 1 1 2
TEX2 WILD-TYPE 16 5 9
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TEX2 MUTATED 1 2 1
TEX2 WILD-TYPE 16 8 6
'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
RBM43 MUTATED 0 1 2 0
RBM43 WILD-TYPE 10 15 7 6
'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM43 MUTATED 2 1 0
RBM43 WILD-TYPE 17 7 13
'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S371.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CIR1 MUTATED 1 2 0 0
CIR1 WILD-TYPE 9 14 9 6
'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S372.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CIR1 MUTATED 2 0 1
CIR1 WILD-TYPE 17 8 12
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 1

Table S373.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CIR1 MUTATED 0 3 0
CIR1 WILD-TYPE 16 10 5
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S374.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CIR1 MUTATED 0 1 0 1 1 0
CIR1 WILD-TYPE 9 3 4 4 7 4
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S375.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CIR1 MUTATED 0 2 0 1
CIR1 WILD-TYPE 14 7 2 8
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 1

Table S376.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CIR1 MUTATED 0 0 1 1 0 1
CIR1 WILD-TYPE 5 6 5 3 11 1
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CIR1 MUTATED 1 1 1
CIR1 WILD-TYPE 16 5 10
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 17 8 6
'TOX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S379.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TOX4 MUTATED 2 2 0 0
TOX4 WILD-TYPE 8 14 9 6
'TOX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S380.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TOX4 MUTATED 3 0 1
TOX4 WILD-TYPE 16 8 12
'TOX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S381.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TOX4 MUTATED 1 2 1
TOX4 WILD-TYPE 15 11 4
'TOX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S382.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TOX4 MUTATED 1 1 1 0 1 0
TOX4 WILD-TYPE 8 3 3 5 7 4
'TOX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S383.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TOX4 MUTATED 1 2 0 1
TOX4 WILD-TYPE 13 7 2 8
'TOX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S384.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TOX4 MUTATED 1 0 1 1 0 1
TOX4 WILD-TYPE 4 6 5 3 11 1
'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TOX4 MUTATED 2 1 1
TOX4 WILD-TYPE 15 5 10
'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TOX4 MUTATED 1 2 1
TOX4 WILD-TYPE 16 8 6
'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S387.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
HIBCH MUTATED 1 2 0 0
HIBCH WILD-TYPE 9 14 9 6
'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S388.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
HIBCH MUTATED 0 1 2
HIBCH WILD-TYPE 19 7 11
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S389.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 15 12 4
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S390.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
HIBCH MUTATED 0 0 1 0 1 1
HIBCH WILD-TYPE 9 4 3 5 7 3
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S391.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
HIBCH MUTATED 0 1 0 2
HIBCH WILD-TYPE 14 8 2 7
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S392.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
HIBCH MUTATED 0 1 1 0 1 0
HIBCH WILD-TYPE 5 5 5 4 10 2
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 16 5 10
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 16 9 6
'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S395.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CRAT MUTATED 0 3 0 0
CRAT WILD-TYPE 10 13 9 6
'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S396.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CRAT MUTATED 0 1 2
CRAT WILD-TYPE 19 7 11
'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S397.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CRAT MUTATED 0 1 2
CRAT WILD-TYPE 16 12 3

Figure S17.  Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S398.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CRAT MUTATED 0 0 1 0 1 1
CRAT WILD-TYPE 9 4 3 5 7 3
'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0032 (Fisher's exact test), Q value = 1

Table S399.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CRAT MUTATED 0 1 2 0
CRAT WILD-TYPE 14 8 0 9

Figure S18.  Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S400.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CRAT MUTATED 0 1 2 0 0 0
CRAT WILD-TYPE 5 5 4 4 11 2
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CRAT MUTATED 0 0 3
CRAT WILD-TYPE 17 6 8
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CRAT MUTATED 0 1 2
CRAT WILD-TYPE 17 9 5
'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S403.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SRP14 MUTATED 1 2 0 0
SRP14 WILD-TYPE 9 14 9 6
'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S404.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SRP14 MUTATED 1 0 2
SRP14 WILD-TYPE 18 8 11
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S405.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SRP14 MUTATED 1 2 0
SRP14 WILD-TYPE 15 11 5
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S406.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SRP14 MUTATED 0 0 0 1 1 1
SRP14 WILD-TYPE 9 4 4 4 7 3
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S407.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SRP14 MUTATED 0 1 0 2
SRP14 WILD-TYPE 14 8 2 7
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S408.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SRP14 MUTATED 0 0 1 1 1 0
SRP14 WILD-TYPE 5 6 5 3 10 2
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SRP14 MUTATED 2 0 1
SRP14 WILD-TYPE 15 6 10
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SRP14 MUTATED 1 1 1
SRP14 WILD-TYPE 16 9 6
'PDZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S411.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PDZD7 MUTATED 0 3 1 0
PDZD7 WILD-TYPE 10 13 8 6
'PDZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S412.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PDZD7 MUTATED 2 1 1
PDZD7 WILD-TYPE 17 7 12
'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S413.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PDZD7 MUTATED 2 2 0
PDZD7 WILD-TYPE 14 11 5
'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S414.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PDZD7 MUTATED 1 1 0 0 1 1
PDZD7 WILD-TYPE 8 3 4 5 7 3
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S415.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PDZD7 MUTATED 1 2 0 1
PDZD7 WILD-TYPE 13 7 2 8
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S416.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PDZD7 MUTATED 0 1 0 0 2 1
PDZD7 WILD-TYPE 5 5 6 4 9 1
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PDZD7 MUTATED 1 1 2
PDZD7 WILD-TYPE 16 5 9
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PDZD7 MUTATED 2 2 0
PDZD7 WILD-TYPE 15 8 7
'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S419.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
POP5 MUTATED 1 1 0 1
POP5 WILD-TYPE 9 15 9 5
'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S420.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 17 7 13
'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S421.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
POP5 MUTATED 1 2 0
POP5 WILD-TYPE 15 11 5
'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S422.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
POP5 MUTATED 0 1 0 1 1 0
POP5 WILD-TYPE 9 3 4 4 7 4
'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S423.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
POP5 MUTATED 1 2 0 0
POP5 WILD-TYPE 13 7 2 9
'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S424.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
POP5 MUTATED 0 1 0 0 1 1
POP5 WILD-TYPE 5 5 6 4 10 1
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S425.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
POP5 MUTATED 1 1 1
POP5 WILD-TYPE 16 5 10
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S426.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 15 9 7
'UNC5D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S427.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
UNC5D MUTATED 0 2 0 1
UNC5D WILD-TYPE 10 14 9 5
'UNC5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S428.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 17 7 13
'UNC5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S429.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
UNC5D MUTATED 1 2 0
UNC5D WILD-TYPE 15 11 5
'UNC5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S430.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
UNC5D MUTATED 1 1 0 0 1 0
UNC5D WILD-TYPE 8 3 4 5 7 4
'UNC5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S431.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
UNC5D MUTATED 1 2 0 0
UNC5D WILD-TYPE 13 7 2 9
'UNC5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S432.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
UNC5D MUTATED 1 1 0 0 0 1
UNC5D WILD-TYPE 4 5 6 4 11 1
'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S433.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
UNC5D MUTATED 1 1 1
UNC5D WILD-TYPE 16 5 10
'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S434.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
UNC5D MUTATED 1 2 0
UNC5D WILD-TYPE 16 8 7
'FAM47C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S435.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
FAM47C MUTATED 0 3 1 1
FAM47C WILD-TYPE 10 13 8 5
'FAM47C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S436.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
FAM47C MUTATED 2 1 2
FAM47C WILD-TYPE 17 7 11
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
FAM47C MUTATED 2 2 1
FAM47C WILD-TYPE 14 11 4
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S438.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
FAM47C MUTATED 1 0 1 0 2 1
FAM47C WILD-TYPE 8 4 3 5 6 3
'FAM47C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S439.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
FAM47C MUTATED 2 1 0 2
FAM47C WILD-TYPE 12 8 2 7
'FAM47C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S440.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
FAM47C MUTATED 1 1 1 1 1 0
FAM47C WILD-TYPE 4 5 5 3 10 2
'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S441.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
FAM47C MUTATED 2 0 3
FAM47C WILD-TYPE 15 6 8
'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S442.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
FAM47C MUTATED 2 2 1
FAM47C WILD-TYPE 15 8 6
'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S443.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TMEM184A MUTATED 1 3 0 0
TMEM184A WILD-TYPE 9 13 9 6
'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S444.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TMEM184A MUTATED 1 1 2
TMEM184A WILD-TYPE 18 7 11
'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S445.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TMEM184A MUTATED 0 2 2
TMEM184A WILD-TYPE 16 11 3

Figure S19.  Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S446.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TMEM184A MUTATED 0 1 2 0 1 0
TMEM184A WILD-TYPE 9 3 2 5 7 4
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S447.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TMEM184A MUTATED 0 2 0 2
TMEM184A WILD-TYPE 14 7 2 7
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S448.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TMEM184A MUTATED 0 0 2 1 0 1
TMEM184A WILD-TYPE 5 6 4 3 11 1
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S449.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TMEM184A MUTATED 1 1 2
TMEM184A WILD-TYPE 16 5 9
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0643 (Fisher's exact test), Q value = 1

Table S450.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TMEM184A MUTATED 0 2 2
TMEM184A WILD-TYPE 17 8 5
'BEGAIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S451.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
BEGAIN MUTATED 0 4 0 0
BEGAIN WILD-TYPE 10 12 9 6
'BEGAIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S452.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BEGAIN MUTATED 1 0 3
BEGAIN WILD-TYPE 18 8 10
'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S453.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
BEGAIN MUTATED 2 1 1
BEGAIN WILD-TYPE 14 12 4
'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S454.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
BEGAIN MUTATED 0 1 1 1 0 1
BEGAIN WILD-TYPE 9 3 3 4 8 3
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S455.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
BEGAIN MUTATED 0 1 1 2
BEGAIN WILD-TYPE 14 8 1 7
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S456.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
BEGAIN MUTATED 0 1 1 0 1 1
BEGAIN WILD-TYPE 5 5 5 4 10 1
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S457.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
BEGAIN MUTATED 1 1 2
BEGAIN WILD-TYPE 16 5 9
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S458.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
BEGAIN MUTATED 1 1 2
BEGAIN WILD-TYPE 16 9 5
'PASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S459.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PASD1 MUTATED 1 3 1 0
PASD1 WILD-TYPE 9 13 8 6
'PASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S460.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PASD1 MUTATED 2 2 1
PASD1 WILD-TYPE 17 6 12
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S461.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PASD1 MUTATED 2 3 0
PASD1 WILD-TYPE 14 10 5
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S462.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PASD1 MUTATED 1 1 0 0 2 1
PASD1 WILD-TYPE 8 3 4 5 6 3
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S463.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PASD1 MUTATED 1 3 0 1
PASD1 WILD-TYPE 13 6 2 8
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S464.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PASD1 MUTATED 1 2 0 0 1 1
PASD1 WILD-TYPE 4 4 6 4 10 1
'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 1

Table S465.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PASD1 MUTATED 1 3 1
PASD1 WILD-TYPE 16 3 10

Figure S20.  Get High-res Image Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S466.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PASD1 MUTATED 2 3 0
PASD1 WILD-TYPE 15 7 7
'RBM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S467.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
RBM45 MUTATED 0 3 0 1
RBM45 WILD-TYPE 10 13 9 5
'RBM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S468.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM45 MUTATED 2 1 1
RBM45 WILD-TYPE 17 7 12
'RBM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S469.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
RBM45 MUTATED 1 2 1
RBM45 WILD-TYPE 15 11 4
'RBM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S470.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
RBM45 MUTATED 0 1 1 1 1 0
RBM45 WILD-TYPE 9 3 3 4 7 4
'RBM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S471.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
RBM45 MUTATED 1 2 0 1
RBM45 WILD-TYPE 13 7 2 8
'RBM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S472.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
RBM45 MUTATED 0 1 1 0 1 1
RBM45 WILD-TYPE 5 5 5 4 10 1
'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S473.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
RBM45 MUTATED 1 2 1
RBM45 WILD-TYPE 16 4 10
'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S474.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
RBM45 MUTATED 1 2 1
RBM45 WILD-TYPE 16 8 6
'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S475.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
POM121 MUTATED 0 3 1 0
POM121 WILD-TYPE 10 13 8 6
'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S476.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
POM121 MUTATED 2 0 2
POM121 WILD-TYPE 17 8 11
'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S477.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
POM121 MUTATED 2 1 1
POM121 WILD-TYPE 14 12 4
'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S478.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
POM121 MUTATED 0 1 1 1 0 1
POM121 WILD-TYPE 9 3 3 4 8 3
'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S479.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
POM121 MUTATED 1 1 0 2
POM121 WILD-TYPE 13 8 2 7
'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S480.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
POM121 MUTATED 0 0 1 0 2 1
POM121 WILD-TYPE 5 6 5 4 9 1
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S481.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
POM121 MUTATED 1 1 2
POM121 WILD-TYPE 16 5 9
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S482.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
POM121 MUTATED 2 1 1
POM121 WILD-TYPE 15 9 6
'EME2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S483.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
EME2 MUTATED 0 3 0 0
EME2 WILD-TYPE 10 13 9 6
'EME2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S484.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EME2 MUTATED 1 0 2
EME2 WILD-TYPE 18 8 11
'EME2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S485.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
EME2 MUTATED 1 1 1
EME2 WILD-TYPE 15 12 4
'EME2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S486.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
EME2 MUTATED 1 1 0 0 0 1
EME2 WILD-TYPE 8 3 4 5 8 3
'EME2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 1

Table S487.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
EME2 MUTATED 0 1 1 1
EME2 WILD-TYPE 14 8 1 8
'EME2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S488.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
EME2 MUTATED 0 0 1 0 1 1
EME2 WILD-TYPE 5 6 5 4 10 1
'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S489.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
EME2 MUTATED 0 1 2
EME2 WILD-TYPE 17 5 9
'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S490.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
EME2 MUTATED 1 1 1
EME2 WILD-TYPE 16 9 6
'CUL4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S491.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CUL4B MUTATED 0 3 0 0
CUL4B WILD-TYPE 10 13 9 6
'CUL4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S492.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CUL4B MUTATED 1 1 1
CUL4B WILD-TYPE 18 7 12
'CUL4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S493.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CUL4B MUTATED 0 2 1
CUL4B WILD-TYPE 16 11 4
'CUL4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S494.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CUL4B MUTATED 0 1 1 0 1 0
CUL4B WILD-TYPE 9 3 3 5 7 4
'CUL4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 1

Table S495.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CUL4B MUTATED 0 2 1 0
CUL4B WILD-TYPE 14 7 1 9

Figure S21.  Get High-res Image Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CUL4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S496.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CUL4B MUTATED 0 1 1 0 0 1
CUL4B WILD-TYPE 5 5 5 4 11 1
'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S497.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CUL4B MUTATED 0 1 2
CUL4B WILD-TYPE 17 5 9
'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S498.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CUL4B MUTATED 0 2 1
CUL4B WILD-TYPE 17 8 6
'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S499.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
DIAPH3 MUTATED 0 2 2 0
DIAPH3 WILD-TYPE 10 14 7 6
'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S500.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
DIAPH3 MUTATED 3 0 1
DIAPH3 WILD-TYPE 16 8 12
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S501.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
DIAPH3 MUTATED 2 1 1
DIAPH3 WILD-TYPE 14 12 4
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S502.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
DIAPH3 MUTATED 2 1 0 0 0 1
DIAPH3 WILD-TYPE 7 3 4 5 8 3
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S503.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
DIAPH3 MUTATED 2 1 1 0
DIAPH3 WILD-TYPE 12 8 1 9
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S504.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
DIAPH3 MUTATED 1 0 1 0 1 1
DIAPH3 WILD-TYPE 4 6 5 4 10 1
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S505.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
DIAPH3 MUTATED 2 1 1
DIAPH3 WILD-TYPE 15 5 10
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S506.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
DIAPH3 MUTATED 2 1 1
DIAPH3 WILD-TYPE 15 9 6
'IFT46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S507.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
IFT46 MUTATED 0 2 1 1
IFT46 WILD-TYPE 10 14 8 5
'IFT46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S508.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IFT46 MUTATED 2 1 1
IFT46 WILD-TYPE 17 7 12
'IFT46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S509.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
IFT46 MUTATED 1 1 1
IFT46 WILD-TYPE 15 12 4
'IFT46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S510.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
IFT46 MUTATED 0 1 0 1 0 1
IFT46 WILD-TYPE 9 3 4 4 8 3
'IFT46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S511.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
IFT46 MUTATED 1 1 1 0
IFT46 WILD-TYPE 13 8 1 9
'IFT46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S512.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
IFT46 MUTATED 0 0 1 0 1 1
IFT46 WILD-TYPE 5 6 5 4 10 1
'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S513.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
IFT46 MUTATED 1 1 1
IFT46 WILD-TYPE 16 5 10
'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S514.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
IFT46 MUTATED 1 1 1
IFT46 WILD-TYPE 16 9 6
'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S515.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
OTUD4 MUTATED 1 3 0 1
OTUD4 WILD-TYPE 9 13 9 5
'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S516.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OTUD4 MUTATED 3 0 2
OTUD4 WILD-TYPE 16 8 11
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S517.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
OTUD4 MUTATED 3 2 0
OTUD4 WILD-TYPE 13 11 5
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 1

Table S518.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
OTUD4 MUTATED 0 2 0 1 0 2
OTUD4 WILD-TYPE 9 2 4 4 8 2

Figure S22.  Get High-res Image Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S519.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
OTUD4 MUTATED 1 2 0 2
OTUD4 WILD-TYPE 13 7 2 7
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S520.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
OTUD4 MUTATED 0 0 0 0 3 2
OTUD4 WILD-TYPE 5 6 6 4 8 0

Figure S23.  Get High-res Image Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S521.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
OTUD4 MUTATED 2 2 1
OTUD4 WILD-TYPE 15 4 10
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S522.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
OTUD4 MUTATED 4 1 0
OTUD4 WILD-TYPE 13 9 7
'GABBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S523.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GABBR1 MUTATED 1 2 0 1
GABBR1 WILD-TYPE 9 14 9 5
'GABBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S524.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GABBR1 MUTATED 3 1 0
GABBR1 WILD-TYPE 16 7 13
'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GABBR1 MUTATED 2 2 0
GABBR1 WILD-TYPE 14 11 5
'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S526.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GABBR1 MUTATED 0 1 0 2 1 0
GABBR1 WILD-TYPE 9 3 4 3 7 4
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S527.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GABBR1 MUTATED 2 2 0 0
GABBR1 WILD-TYPE 12 7 2 9
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S528.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GABBR1 MUTATED 0 1 0 0 2 1
GABBR1 WILD-TYPE 5 5 6 4 9 1
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GABBR1 MUTATED 2 1 1
GABBR1 WILD-TYPE 15 5 10
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S530.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GABBR1 MUTATED 2 2 0
GABBR1 WILD-TYPE 15 8 7
'MYH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S531.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MYH10 MUTATED 0 3 1 0
MYH10 WILD-TYPE 10 13 8 6
'MYH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S532.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MYH10 MUTATED 1 1 2
MYH10 WILD-TYPE 18 7 11
'MYH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S533.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MYH10 MUTATED 1 2 1
MYH10 WILD-TYPE 15 11 4
'MYH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S534.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MYH10 MUTATED 1 1 1 0 1 0
MYH10 WILD-TYPE 8 3 3 5 7 4
'MYH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S535.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MYH10 MUTATED 1 2 0 1
MYH10 WILD-TYPE 13 7 2 8
'MYH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S536.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MYH10 MUTATED 1 1 1 0 0 1
MYH10 WILD-TYPE 4 5 5 4 11 1
'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S537.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MYH10 MUTATED 1 2 1
MYH10 WILD-TYPE 16 4 10
'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S538.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MYH10 MUTATED 1 2 1
MYH10 WILD-TYPE 16 8 6
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S539.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ERF MUTATED 0 3 1 0
ERF WILD-TYPE 10 13 8 6
'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S540.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ERF MUTATED 2 2 0
ERF WILD-TYPE 17 6 13
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S541.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ERF MUTATED 1 3 0
ERF WILD-TYPE 15 10 5
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S542.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ERF MUTATED 1 1 0 0 2 0
ERF WILD-TYPE 8 3 4 5 6 4
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S543.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ERF MUTATED 1 3 0 0
ERF WILD-TYPE 13 6 2 9
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 1

Table S544.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ERF MUTATED 1 2 0 0 0 1
ERF WILD-TYPE 4 4 6 4 11 1
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S545.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ERF MUTATED 1 2 1
ERF WILD-TYPE 16 4 10
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S546.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ERF MUTATED 1 3 0
ERF WILD-TYPE 16 7 7
'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S547.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
OR10A7 MUTATED 0 1 2 1
OR10A7 WILD-TYPE 10 15 7 5
'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S548.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OR10A7 MUTATED 2 1 1
OR10A7 WILD-TYPE 17 7 12
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S549.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 14 12 5
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S550.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
OR10A7 MUTATED 2 0 0 0 1 0
OR10A7 WILD-TYPE 7 4 4 5 7 4
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S551.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
OR10A7 MUTATED 3 0 0 0
OR10A7 WILD-TYPE 11 9 2 9
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S552.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
OR10A7 MUTATED 1 0 0 1 1 0
OR10A7 WILD-TYPE 4 6 6 3 10 2
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S553.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
OR10A7 MUTATED 3 0 0
OR10A7 WILD-TYPE 14 6 11
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S554.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 15 9 7
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S555.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
BRDT MUTATED 0 3 0 1
BRDT WILD-TYPE 10 13 9 5
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S556.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BRDT MUTATED 2 1 1
BRDT WILD-TYPE 17 7 12
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S557.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
BRDT MUTATED 1 2 1
BRDT WILD-TYPE 15 11 4
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S558.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
BRDT MUTATED 0 1 1 1 1 0
BRDT WILD-TYPE 9 3 3 4 7 4
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S559.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
BRDT MUTATED 1 2 1 0
BRDT WILD-TYPE 13 7 1 9
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S560.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
BRDT MUTATED 0 1 1 0 1 1
BRDT WILD-TYPE 5 5 5 4 10 1
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S561.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
BRDT MUTATED 1 2 1
BRDT WILD-TYPE 16 4 10
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S562.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
BRDT MUTATED 1 2 1
BRDT WILD-TYPE 16 8 6
'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S563.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
CDHR5 MUTATED 1 2 0 1
CDHR5 WILD-TYPE 9 14 9 5
'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CDHR5 MUTATED 2 1 1
CDHR5 WILD-TYPE 17 7 12
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 1

Table S565.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
CDHR5 MUTATED 0 3 1
CDHR5 WILD-TYPE 16 10 4
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S566.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
CDHR5 MUTATED 0 2 1 0 1 0
CDHR5 WILD-TYPE 9 2 3 5 7 4
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S567.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
CDHR5 MUTATED 1 2 0 1
CDHR5 WILD-TYPE 13 7 2 8
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S568.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
CDHR5 MUTATED 0 1 1 0 1 1
CDHR5 WILD-TYPE 5 5 5 4 10 1
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S569.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
CDHR5 MUTATED 1 1 2
CDHR5 WILD-TYPE 16 5 9
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S570.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
CDHR5 MUTATED 2 1 1
CDHR5 WILD-TYPE 15 9 6
'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S571.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
EPS8L3 MUTATED 0 2 0 1
EPS8L3 WILD-TYPE 10 14 9 5
'EPS8L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S572.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EPS8L3 MUTATED 1 0 2
EPS8L3 WILD-TYPE 18 8 11
'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S573.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GPR25 MUTATED 1 1 1 0
GPR25 WILD-TYPE 9 15 8 6
'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S574.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GPR25 MUTATED 2 1 0
GPR25 WILD-TYPE 17 7 13
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S575.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GPR25 MUTATED 1 2 0
GPR25 WILD-TYPE 15 11 5
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S576.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GPR25 MUTATED 0 1 0 1 1 0
GPR25 WILD-TYPE 9 3 4 4 7 4
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S577.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GPR25 MUTATED 1 2 0 0
GPR25 WILD-TYPE 13 7 2 9
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S578.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GPR25 MUTATED 0 0 0 1 1 1
GPR25 WILD-TYPE 5 6 6 3 10 1
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S579.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GPR25 MUTATED 2 1 0
GPR25 WILD-TYPE 15 5 11
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S580.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GPR25 MUTATED 1 2 0
GPR25 WILD-TYPE 16 8 7
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S581.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
PPARGC1B MUTATED 1 2 0 0
PPARGC1B WILD-TYPE 9 14 9 6
'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S582.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PPARGC1B MUTATED 1 1 1
PPARGC1B WILD-TYPE 18 7 12
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S583.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
PPARGC1B MUTATED 0 2 1
PPARGC1B WILD-TYPE 16 11 4
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S584.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
PPARGC1B MUTATED 0 1 1 0 1 0
PPARGC1B WILD-TYPE 9 3 3 5 7 4
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S585.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
PPARGC1B MUTATED 0 2 1 0
PPARGC1B WILD-TYPE 14 7 1 9

Figure S24.  Get High-res Image Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S586.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
PPARGC1B MUTATED 0 1 1 0 0 1
PPARGC1B WILD-TYPE 5 5 5 4 11 1
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S587.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
PPARGC1B MUTATED 0 2 1
PPARGC1B WILD-TYPE 17 4 10
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S588.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
PPARGC1B MUTATED 0 2 1
PPARGC1B WILD-TYPE 17 8 6
'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S589.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
FGF10 MUTATED 1 0 2 0
FGF10 WILD-TYPE 9 16 7 6
'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S590.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
FGF10 MUTATED 3 0 0
FGF10 WILD-TYPE 16 8 13
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S591.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
FGF10 MUTATED 2 1 0
FGF10 WILD-TYPE 14 12 5
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S592.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
FGF10 MUTATED 2 0 0 0 1 0
FGF10 WILD-TYPE 7 4 4 5 7 4
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S593.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
FGF10 MUTATED 3 0 0 0
FGF10 WILD-TYPE 11 9 2 9
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S594.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
FGF10 MUTATED 0 0 0 1 2 0
FGF10 WILD-TYPE 5 6 6 3 9 2
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S595.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
FGF10 MUTATED 3 0 0
FGF10 WILD-TYPE 14 6 11
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S596.  Gene #76: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
FGF10 MUTATED 2 1 0
FGF10 WILD-TYPE 15 9 7
'SALL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S597.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SALL1 MUTATED 0 3 1 1
SALL1 WILD-TYPE 10 13 8 5
'SALL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S598.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SALL1 MUTATED 2 1 1
SALL1 WILD-TYPE 17 7 12
'SALL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S599.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SALL1 MUTATED 2 2 0
SALL1 WILD-TYPE 14 11 5
'SALL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S600.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SALL1 MUTATED 2 1 0 0 1 0
SALL1 WILD-TYPE 7 3 4 5 7 4
'SALL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S601.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SALL1 MUTATED 1 2 0 1
SALL1 WILD-TYPE 13 7 2 8
'SALL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S602.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SALL1 MUTATED 0 1 0 0 2 1
SALL1 WILD-TYPE 5 5 6 4 9 1
'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S603.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SALL1 MUTATED 1 1 2
SALL1 WILD-TYPE 16 5 9
'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S604.  Gene #77: 'SALL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
SALL1 MUTATED 2 2 0
SALL1 WILD-TYPE 15 8 7
'VEPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S605.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
VEPH1 MUTATED 0 2 2 0
VEPH1 WILD-TYPE 10 14 7 6
'VEPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S606.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
VEPH1 MUTATED 3 0 1
VEPH1 WILD-TYPE 16 8 12
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S607.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
VEPH1 MUTATED 2 2 0
VEPH1 WILD-TYPE 14 11 5
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
VEPH1 MUTATED 1 1 0 1 1 0
VEPH1 WILD-TYPE 8 3 4 4 7 4
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S609.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
VEPH1 MUTATED 2 1 0 1
VEPH1 WILD-TYPE 12 8 2 8
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S610.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
VEPH1 MUTATED 0 0 0 1 2 1
VEPH1 WILD-TYPE 5 6 6 3 9 1
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S611.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
VEPH1 MUTATED 2 1 1
VEPH1 WILD-TYPE 15 5 10
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S612.  Gene #78: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
VEPH1 MUTATED 2 2 0
VEPH1 WILD-TYPE 15 8 7
'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S613.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ATRX MUTATED 0 2 0 1
ATRX WILD-TYPE 10 14 9 5
'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S614.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ATRX MUTATED 2 1 0
ATRX WILD-TYPE 17 7 13
'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S615.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ATRX MUTATED 1 2 0
ATRX WILD-TYPE 15 11 5
'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S616.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ATRX MUTATED 1 1 0 0 1 0
ATRX WILD-TYPE 8 3 4 5 7 4
'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S617.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ATRX MUTATED 1 2 0 0
ATRX WILD-TYPE 13 7 2 9
'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S618.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ATRX MUTATED 0 1 0 0 1 1
ATRX WILD-TYPE 5 5 6 4 10 1
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S619.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ATRX MUTATED 1 2 0
ATRX WILD-TYPE 16 4 11
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S620.  Gene #79: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ATRX MUTATED 1 2 0
ATRX WILD-TYPE 16 8 7
'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S621.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
ST6GALNAC5 MUTATED 0 3 0 1
ST6GALNAC5 WILD-TYPE 10 13 9 5
'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S622.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ST6GALNAC5 MUTATED 2 0 2
ST6GALNAC5 WILD-TYPE 17 8 11
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S623.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
ST6GALNAC5 MUTATED 3 1 0
ST6GALNAC5 WILD-TYPE 13 12 5
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S624.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
ST6GALNAC5 MUTATED 1 1 0 0 0 2
ST6GALNAC5 WILD-TYPE 8 3 4 5 8 2
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S625.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
ST6GALNAC5 MUTATED 1 1 0 2
ST6GALNAC5 WILD-TYPE 13 8 2 7
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S626.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
ST6GALNAC5 MUTATED 0 0 0 0 3 1
ST6GALNAC5 WILD-TYPE 5 6 6 4 8 1
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S627.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
ST6GALNAC5 MUTATED 2 1 1
ST6GALNAC5 WILD-TYPE 15 5 10
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S628.  Gene #80: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
ST6GALNAC5 MUTATED 3 1 0
ST6GALNAC5 WILD-TYPE 14 9 7
'DHX57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S629.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
DHX57 MUTATED 0 2 1 0
DHX57 WILD-TYPE 10 14 8 6
'DHX57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S630.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
DHX57 MUTATED 2 0 1
DHX57 WILD-TYPE 17 8 12
'DHX57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S631.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
DHX57 MUTATED 2 1 0
DHX57 WILD-TYPE 14 12 5
'DHX57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S632.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
DHX57 MUTATED 1 1 0 0 0 1
DHX57 WILD-TYPE 8 3 4 5 8 3
'DHX57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
DHX57 MUTATED 1 1 0 1
DHX57 WILD-TYPE 13 8 2 8
'DHX57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S634.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
DHX57 MUTATED 0 0 0 0 2 1
DHX57 WILD-TYPE 5 6 6 4 9 1
'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S635.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
DHX57 MUTATED 1 1 1
DHX57 WILD-TYPE 16 5 10
'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S636.  Gene #81: 'DHX57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
DHX57 MUTATED 2 1 0
DHX57 WILD-TYPE 15 9 7
'GNL3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 1

Table S637.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GNL3L MUTATED 0 1 0 2
GNL3L WILD-TYPE 10 15 9 4
'GNL3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S638.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GNL3L MUTATED 2 0 1
GNL3L WILD-TYPE 17 8 12
'GNL3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S639.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GNL3L MUTATED 3 0 0
GNL3L WILD-TYPE 13 13 5
'GNL3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S640.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GNL3L MUTATED 1 0 0 1 0 1
GNL3L WILD-TYPE 8 4 4 4 8 3
'GNL3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S641.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GNL3L MUTATED 2 0 0 1
GNL3L WILD-TYPE 12 9 2 8
'GNL3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S642.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GNL3L MUTATED 0 0 0 0 3 0
GNL3L WILD-TYPE 5 6 6 4 8 2
'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S643.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GNL3L MUTATED 3 0 0
GNL3L WILD-TYPE 14 6 11
'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S644.  Gene #82: 'GNL3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GNL3L MUTATED 3 0 0
GNL3L WILD-TYPE 14 10 7
'MST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S645.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MST1 MUTATED 1 2 2 0
MST1 WILD-TYPE 9 14 7 6
'MST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S646.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MST1 MUTATED 2 1 2
MST1 WILD-TYPE 17 7 11
'MST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S647.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MST1 MUTATED 2 3 0
MST1 WILD-TYPE 14 10 5
'MST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S648.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MST1 MUTATED 1 2 0 1 1 0
MST1 WILD-TYPE 8 2 4 4 7 4
'MST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S649.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MST1 MUTATED 1 3 0 1
MST1 WILD-TYPE 13 6 2 8
'MST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S650.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MST1 MUTATED 1 2 0 1 0 1
MST1 WILD-TYPE 4 4 6 3 11 1
'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S651.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MST1 MUTATED 2 2 1
MST1 WILD-TYPE 15 4 10
'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S652.  Gene #83: 'MST1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MST1 MUTATED 1 3 1
MST1 WILD-TYPE 16 7 6
'GRB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S653.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GRB7 MUTATED 2 1 1 0
GRB7 WILD-TYPE 8 15 8 6
'GRB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S654.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GRB7 MUTATED 4 0 0
GRB7 WILD-TYPE 15 8 13
'GRB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S655.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GRB7 MUTATED 2 2 0
GRB7 WILD-TYPE 14 11 5
'GRB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S656.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GRB7 MUTATED 1 1 0 1 1 0
GRB7 WILD-TYPE 8 3 4 4 7 4
'GRB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S657.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GRB7 MUTATED 3 1 0 0
GRB7 WILD-TYPE 11 8 2 9
'GRB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S658.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GRB7 MUTATED 1 0 0 1 1 1
GRB7 WILD-TYPE 4 6 6 3 10 1
'GRB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S659.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GRB7 MUTATED 3 1 0
GRB7 WILD-TYPE 14 5 11
'GRB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S660.  Gene #84: 'GRB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GRB7 MUTATED 2 2 0
GRB7 WILD-TYPE 15 8 7
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S661.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
TMC4 MUTATED 1 4 0 0
TMC4 WILD-TYPE 9 12 9 6
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S662.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TMC4 MUTATED 2 1 2
TMC4 WILD-TYPE 17 7 11
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S663.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
TMC4 MUTATED 2 2 0
TMC4 WILD-TYPE 14 11 5
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S664.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
TMC4 MUTATED 0 1 0 1 1 1
TMC4 WILD-TYPE 9 3 4 4 7 3
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S665.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
TMC4 MUTATED 0 2 0 2
TMC4 WILD-TYPE 14 7 2 7
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S666.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
TMC4 MUTATED 0 2 0 0 1 1
TMC4 WILD-TYPE 5 4 6 4 10 1
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S667.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
TMC4 MUTATED 1 1 2
TMC4 WILD-TYPE 16 5 9
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S668.  Gene #85: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
TMC4 MUTATED 1 2 1
TMC4 WILD-TYPE 16 8 6
'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S669.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
MED9 MUTATED 0 2 1 0
MED9 WILD-TYPE 10 14 8 6
'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S670.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MED9 MUTATED 2 0 1
MED9 WILD-TYPE 17 8 12
'MED9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S671.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
MED9 MUTATED 1 1 1
MED9 WILD-TYPE 15 12 4
'MED9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S672.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
MED9 MUTATED 1 1 1 0 0 0
MED9 WILD-TYPE 8 3 3 5 8 4
'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S673.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
MED9 MUTATED 1 1 1 0
MED9 WILD-TYPE 13 8 1 9
'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S674.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
MED9 MUTATED 1 0 1 0 0 1
MED9 WILD-TYPE 4 6 5 4 11 1
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S675.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
MED9 MUTATED 1 1 1
MED9 WILD-TYPE 16 5 10
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S676.  Gene #86: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
MED9 MUTATED 1 1 1
MED9 WILD-TYPE 16 9 6
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S677.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
WASF3 MUTATED 0 1 1 1
WASF3 WILD-TYPE 10 15 8 5
'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S678.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
WASF3 MUTATED 2 0 1
WASF3 WILD-TYPE 17 8 12
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S679.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
WASF3 MUTATED 1 1 1
WASF3 WILD-TYPE 15 12 4
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S680.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
WASF3 MUTATED 1 1 1 0 0 0
WASF3 WILD-TYPE 8 3 3 5 8 4
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S681.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
WASF3 MUTATED 1 1 1 0
WASF3 WILD-TYPE 13 8 1 9
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S682.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
WASF3 MUTATED 1 0 1 0 0 1
WASF3 WILD-TYPE 4 6 5 4 11 1
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S683.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
WASF3 MUTATED 1 1 1
WASF3 WILD-TYPE 16 5 10
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S684.  Gene #87: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
WASF3 MUTATED 2 0 1
WASF3 WILD-TYPE 15 10 6
'GIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S685.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
GIT1 MUTATED 0 2 0 1
GIT1 WILD-TYPE 10 14 9 5
'GIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S686.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GIT1 MUTATED 2 1 0
GIT1 WILD-TYPE 17 7 13
'GIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S687.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
GIT1 MUTATED 1 2 0
GIT1 WILD-TYPE 15 11 5
'GIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S688.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
GIT1 MUTATED 1 1 0 0 1 0
GIT1 WILD-TYPE 8 3 4 5 7 4
'GIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S689.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
GIT1 MUTATED 1 2 0 0
GIT1 WILD-TYPE 13 7 2 9
'GIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S690.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
GIT1 MUTATED 1 1 0 0 0 1
GIT1 WILD-TYPE 4 5 6 4 11 1
'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S691.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
GIT1 MUTATED 1 1 1
GIT1 WILD-TYPE 16 5 10
'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S692.  Gene #88: 'GIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 10 7
GIT1 MUTATED 1 2 0
GIT1 WILD-TYPE 16 8 7
'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S693.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 10 16 9 6
SV2A MUTATED 0 1 2 0
SV2A WILD-TYPE 10 15 7 6
'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S694.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SV2A MUTATED 2 1 0
SV2A WILD-TYPE 17 7 13
'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S695.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 5
SV2A MUTATED 2 1 0
SV2A WILD-TYPE 14 12 5
'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S696.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 4 4 5 8 4
SV2A MUTATED 1 0 0 1 1 0
SV2A WILD-TYPE 8 4 4 4 7 4
'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S697.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 14 9 2 9
SV2A MUTATED 2 1 0 0
SV2A WILD-TYPE 12 8 2 9
'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S698.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 5 6 6 4 11 2
SV2A MUTATED 0 1 0 0 2 0
SV2A WILD-TYPE 5 5 6 4 9 2
'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S699.  Gene #89: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 17 6 11
SV2A MUTATED 2 1 0
SV2A WILD-TYPE 15 5 11