		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	89 (22%)	319	4e-05	0.0302	0.02705	1	0.29194	1	0.2234	1	0.44405	1	0.73401	1	0.78797	1	0.249	1	0.794	1	0.04847	1
1q gain	128 (31%)	280	0.00155	1	0.3295	1	0.67452	1	0.97288	1	0.45163	1	0.82855	1	0.33226	1	0.5315	1	0.30554	1	0.46987	1
2p gain	110 (27%)	298	9.9999e-06	0.008	0.00029	0.214	0.32607	1	0.73473	1	0.19575	1	0.03367	1	0.096799	1	0.01406	1	0.23176	1	0.00196	1
2q gain	55 (13%)	353	9.9999e-06	0.008	0.13479	1	0.61606	1	0.29663	1	0.732	1	0.71007	1	0.10136	1	0.35998	1	0.68176	1	0.42622	1
3p gain	140 (34%)	268	0.00048	0.349	0.78133	1	0.15759	1	0.23354	1	0.0087499	1	0.01375	1	0.01317	1	0.04121	1	0.0097499	1	3e-04	0.221
3q gain	178 (44%)	230	4e-05	0.0302	0.95089	1	0.45256	1	0.99413	1	0.21486	1	0.063599	1	0.0089799	1	0.0094199	1	0.0064099	1	9.9999e-06	0.008
4p gain	39 (10%)	369	0.060159	1	0.00389	1	0.60643	1	0.41553	1	0.01834	1	0.0071599	1	0.0099999	1	0.54725	1	0.32349	1	0.5703	1
4q gain	25 (6%)	383	0.03863	1	0.2146	1	0.54576	1	0.20365	1	0.079899	1	0.32079	1	0.03282	1	0.46633	1	0.31903	1	0.27014	1
5p gain	166 (41%)	242	9.9999e-06	0.008	0.39009	1	0.04268	1	0.24015	1	0.16684	1	0.00143	1	0.83679	1	0.00253	1	0.091539	1	0.00459	1
5q gain	51 (12%)	357	0.01727	1	0.69448	1	0.0099699	1	0.13571	1	0.38317	1	0.36246	1	0.48553	1	0.18741	1	0.62105	1	0.068579	1
6p gain	75 (18%)	333	0.00365	1	0.41301	1	0.84783	1	0.13283	1	0.5754	1	0.17236	1	0.94423	1	0.66505	1	0.22185	1	0.29712	1
6q gain	41 (10%)	367	0.04419	1	0.32867	1	0.97529	1	0.04053	1	0.59909	1	0.18108	1	0.50321	1	0.44516	1	0.04121	1	0.02543	1
7p gain	172 (42%)	236	9.9999e-06	0.008	0.01295	1	0.0135	1	0.33848	1	0.62972	1	0.12128	1	0.2954	1	0.03456	1	0.2462	1	0.00025	0.185
7q gain	150 (37%)	258	9.9999e-06	0.008	0.0068199	1	0.16251	1	0.83029	1	0.50117	1	0.13539	1	0.10758	1	0.1177	1	0.84846	1	0.00456	1
8p gain	92 (23%)	316	0.00063999	0.463	0.27337	1	0.14989	1	0.03701	1	0.28628	1	0.80595	1	0.2203	1	0.01962	1	0.70097	1	0.10715	1
8q gain	204 (50%)	204	0.00086999	0.626	0.12522	1	0.055609	1	0.13794	1	0.80743	1	0.97996	1	0.35679	1	0.03282	1	0.73716	1	0.058219	1
9p gain	68 (17%)	340	9.9999e-06	0.008	0.12958	1	0.85832	1	0.58462	1	0.44652	1	0.40994	1	0.37898	1	0.24457	1	5.9999e-05	0.0449	9.9999e-06	0.008
9q gain	56 (14%)	352	5e-05	0.0375	0.02772	1	0.88002	1	0.02954	1	0.03891	1	0.00259	1	0.84885	1	0.31057	1	0.00049	0.356	3e-05	0.0227
10p gain	117 (29%)	291	9.9999e-06	0.008	0.78665	1	0.81708	1	0.46797	1	0.60512	1	0.02528	1	0.92965	1	0.75335	1	0.76532	1	0.0093099	1
10q gain	44 (11%)	364	0.00022	0.163	0.19452	1	0.36171	1	0.37058	1	0.47387	1	0.02549	1	0.41948	1	0.99385	1	0.13719	1	0.073489	1
11p gain	29 (7%)	379	0.00412	1	0.11505	1	0.19536	1	0.15331	1	0.21418	1	0.053689	1	0.96839	1	0.46906	1	0.00401	1	0.03335	1
11q gain	48 (12%)	360	0.0063799	1	0.53428	1	0.19894	1	0.03156	1	0.64635	1	0.00295	1	0.81449	1	0.7506	1	0.01579	1	0.12129	1
12p gain	115 (28%)	293	3e-05	0.0227	0.04612	1	0.70492	1	0.40403	1	0.85482	1	0.87176	1	0.89922	1	0.02495	1	0.33827	1	0.12682	1
12q gain	90 (22%)	318	0.00228	1	0.55403	1	0.068169	1	0.01289	1	0.15188	1	0.2489	1	0.59298	1	0.056969	1	0.79957	1	0.03756	1
13q gain	100 (25%)	308	0.0096599	1	0.83496	1	0.94192	1	0.74803	1	0.3808	1	0.59267	1	0.72179	1	0.82465	1	0.23235	1	0.01625	1
14q gain	59 (14%)	349	0.00056999	0.413	0.35455	1	0.3795	1	0.15044	1	0.051219	1	0.090599	1	0.74349	1	0.21261	1	0.56874	1	0.4526	1
15q gain	34 (8%)	374	0.28481	1	0.0022	1	0.70904	1	0.57586	1	0.77481	1	0.02152	1	0.1001	1	0.72969	1	0.20883	1	0.14639	1
16p gain	75 (18%)	333	0.04157	1	0.30318	1	0.42999	1	0.27368	1	0.31031	1	0.079619	1	0.44805	1	0.26382	1	0.53942	1	0.45339	1
16q gain	81 (20%)	327	0.11433	1	0.098549	1	0.32746	1	0.19567	1	0.26046	1	0.087939	1	0.22778	1	0.13677	1	0.63872	1	0.20398	1
17p gain	56 (14%)	352	0.00036	0.264	0.16502	1	0.42683	1	0.96025	1	0.48248	1	0.03481	1	0.02614	1	0.19539	1	0.11327	1	0.02703	1
17q gain	136 (33%)	272	0.00078999	0.569	0.074469	1	0.50791	1	0.5405	1	0.10939	1	0.27254	1	0.16955	1	0.17461	1	0.16395	1	0.00133	0.943
18p gain	116 (28%)	292	9.9999e-06	0.008	0.00052999	0.385	0.95132	1	0.91117	1	0.20061	1	0.059209	1	0.39012	1	0.12692	1	0.058499	1	5e-05	0.0375
18q gain	63 (15%)	345	0.00118	0.841	0.01188	1	0.32287	1	0.30199	1	0.59664	1	0.99012	1	0.087159	1	0.54907	1	0.29862	1	0.0059499	1
19p gain	88 (22%)	320	0.00033	0.242	0.62031	1	0.50661	1	0.59708	1	0.13671	1	0.37976	1	0.60933	1	0.47293	1	0.12735	1	0.73804	1
19q gain	135 (33%)	273	9.9999e-06	0.008	0.31299	1	0.44259	1	0.67939	1	0.53019	1	0.43302	1	0.49991	1	0.03975	1	0.15196	1	0.19528	1
20p gain	202 (50%)	206	2e-05	0.0152	0.02403	1	0.56909	1	0.04863	1	0.28666	1	0.02201	1	0.31388	1	0.070679	1	0.02683	1	0.060769	1
20q gain	230 (56%)	178	9.9999e-06	0.008	0.063929	1	0.37214	1	0.1805	1	0.46104	1	0.21114	1	0.20012	1	0.12792	1	0.21868	1	0.01533	1
21q gain	117 (29%)	291	9.9999e-06	0.008	0.0093599	1	0.50007	1	0.26557	1	0.00381	1	0.00433	1	0.00264	1	0.00439	1	0.02043	1	0.17306	1
22q gain	50 (12%)	358	0.00129	0.916	0.00146	1	0.59139	1	0.56658	1	0.00128	0.91	0.066379	1	0.13905	1	0.32861	1	0.052639	1	0.10423	1
xq gain	49 (12%)	359	0.01928	1	0.081389	1	0.74909	1	0.77961	1	0.49092	1	0.34758	1	0.14848	1	0.22487	1	0.25088	1	0.56775	1
1p loss	30 (7%)	378	0.11489	1	0.52064	1	0.25235	1	0.12194	1	0.61974	1	0.38757	1	0.41701	1	0.83416	1	0.78405	1	0.7851	1
1q loss	30 (7%)	378	0.03033	1	0.84595	1	0.39952	1	0.95744	1	0.53429	1	0.60169	1	0.85743	1	0.25746	1	0.52013	1	0.050079	1
2p loss	44 (11%)	364	0.088069	1	0.16132	1	0.96141	1	0.74863	1	0.22035	1	0.089139	1	0.48955	1	0.69784	1	0.1829	1	0.16093	1
2q loss	90 (22%)	318	0.00026	0.192	0.00098999	0.707	0.75175	1	0.54269	1	0.050579	1	0.055349	1	0.73322	1	0.69403	1	0.03563	1	0.01193	1
3p loss	52 (13%)	356	0.30077	1	0.12528	1	0.0217	1	0.02476	1	9.9999e-06	0.008	9.9999e-06	0.008	0.4418	1	0.00091999	0.661	3e-05	0.0227	0.00015	0.112
3q loss	23 (6%)	385	0.59853	1	0.43955	1	0.00328	1	0.01336	1	0.058029	1	0.01393	1	0.88997	1	0.23255	1	0.00093999	0.674	0.14218	1
4p loss	142 (35%)	266	9.9999e-06	0.008	0.0093399	1	0.38611	1	0.44544	1	0.02069	1	0.00162	1	0.078129	1	0.02854	1	0.03077	1	0.10095	1
4q loss	136 (33%)	272	9.9999e-06	0.008	0.00226	1	0.13901	1	0.19174	1	0.16266	1	0.00461	1	0.59233	1	0.052259	1	0.00384	1	0.00314	1
5p loss	54 (13%)	354	0.03578	1	0.44385	1	0.31561	1	0.66525	1	0.51369	1	0.01699	1	0.89594	1	0.70213	1	0.059519	1	0.02654	1
5q loss	159 (39%)	249	9.9999e-06	0.008	0.01074	1	0.79537	1	0.18822	1	0.3339	1	0.059869	1	0.22735	1	0.01902	1	0.28826	1	0.01346	1
6p loss	100 (25%)	308	9.9999e-06	0.008	0.00027	0.199	0.63704	1	0.75813	1	0.12141	1	0.0054399	1	0.24223	1	0.01084	1	0.22372	1	0.00095999	0.687
6q loss	156 (38%)	252	9.9999e-06	0.008	0.00387	1	0.83192	1	0.48802	1	0.39482	1	0.089439	1	0.17899	1	0.00456	1	0.59796	1	5e-05	0.0375
7p loss	19 (5%)	389	0.30548	1	0.62943	1	0.26801	1	0.61986	1	0.80302	1	0.77604	1	0.24351	1	0.098839	1	0.26329	1	0.23889	1
7q loss	27 (7%)	381	0.03343	1	0.83759	1	0.32294	1	0.42793	1	0.6831	1	0.98898	1	0.44014	1	0.23163	1	0.56188	1	0.29613	1
8p loss	185 (45%)	223	9.9999e-06	0.008	0.01891	1	0.14578	1	0.10205	1	0.02579	1	0.15016	1	0.16742	1	0.15056	1	0.2846	1	0.00379	1
8q loss	33 (8%)	375	0.099139	1	0.81547	1	0.31977	1	0.0095999	1	0.087889	1	0.18742	1	0.28709	1	0.64868	1	0.64678	1	0.66946	1
9p loss	174 (43%)	234	9.9999e-06	0.008	0.00175	1	0.28914	1	0.089819	1	0.062819	1	0.00329	1	0.04223	1	0.00136	0.962	2e-05	0.0152	9.9999e-06	0.008
9q loss	169 (41%)	239	9.9999e-06	0.008	4e-05	0.0302	0.02819	1	0.01036	1	0.00046	0.335	9.9999e-06	0.008	0.02702	1	0.00067999	0.492	9.9999e-06	0.008	9.9999e-06	0.008
10p loss	73 (18%)	335	0.03764	1	0.01481	1	0.91075	1	0.26593	1	0.00474	1	0.00412	1	0.54422	1	0.1248	1	0.41508	1	0.34765	1
10q loss	127 (31%)	281	9.9999e-06	0.008	0.00023	0.171	0.51339	1	0.58059	1	0.01773	1	0.15623	1	0.18291	1	0.058939	1	0.25271	1	0.03207	1
11p loss	180 (44%)	228	9.9999e-06	0.008	9.9999e-06	0.008	0.18072	1	0.79944	1	0.00011	0.0821	0.00038	0.277	0.13244	1	0.087929	1	0.00023	0.171	0.00068999	0.497
11q loss	131 (32%)	277	9.9999e-06	0.008	0.00095999	0.687	0.04194	1	0.15627	1	0.04122	1	0.19409	1	0.59351	1	0.49284	1	0.52772	1	0.22824	1
12p loss	53 (13%)	355	0.0074499	1	0.62093	1	0.94403	1	0.47394	1	0.085959	1	0.11744	1	0.52322	1	0.43997	1	0.14266	1	0.2688	1
12q loss	57 (14%)	351	2e-05	0.0152	0.43511	1	0.36685	1	0.40682	1	0.81312	1	0.66396	1	1	1	0.65251	1	0.8283	1	0.068929	1
13q loss	85 (21%)	323	3e-04	0.221	0.16083	1	0.01036	1	0.10283	1	0.03926	1	0.16219	1	0.2402	1	9.9999e-06	0.008	0.01307	1	0.0014	0.988
14q loss	119 (29%)	289	9.9999e-06	0.008	0.64937	1	0.067919	1	0.03751	1	0.090759	1	0.00037	0.27	0.00167	1	0.031	1	0.0075299	1	5.9999e-05	0.0449
15q loss	144 (35%)	264	9.9999e-06	0.008	0.00033	0.242	0.1065	1	0.31513	1	0.34246	1	0.01667	1	0.0153	1	9.9999e-06	0.008	0.01251	1	0.00013	0.0968
16p loss	106 (26%)	302	9.9999e-06	0.008	0.02419	1	0.65817	1	0.60363	1	0.84814	1	0.60451	1	0.31322	1	0.11748	1	0.066299	1	0.01065	1
16q loss	104 (25%)	304	9.9999e-06	0.008	0.02006	1	0.58928	1	0.90285	1	0.49513	1	0.88498	1	0.91482	1	0.068939	1	0.7729	1	0.0075599	1
17p loss	182 (45%)	226	9.9999e-06	0.008	0.64065	1	0.91114	1	0.52992	1	0.44626	1	0.0094199	1	0.6755	1	0.01544	1	0.16308	1	0.00347	1
17q loss	42 (10%)	366	0.00134	0.949	0.70485	1	0.81392	1	0.6969	1	0.56898	1	0.74549	1	0.79362	1	0.77433	1	0.8365	1	0.58182	1
18p loss	98 (24%)	310	0.00067999	0.492	0.46617	1	0.45041	1	0.36452	1	0.59598	1	0.26564	1	0.17075	1	0.83491	1	0.1141	1	0.25646	1
18q loss	144 (35%)	264	0.0051999	1	0.4124	1	0.68255	1	0.74435	1	0.63774	1	0.77664	1	0.00185	1	0.00217	1	0.083319	1	0.33442	1
19p loss	94 (23%)	314	0.00127	0.904	0.52915	1	0.64128	1	0.48963	1	0.092179	1	0.02859	1	0.2562	1	0.30588	1	0.33932	1	0.068559	1
19q loss	57 (14%)	351	0.01663	1	1	1	0.20424	1	0.093499	1	0.39904	1	0.29352	1	0.070359	1	0.62836	1	0.26808	1	0.0188	1
20p loss	33 (8%)	375	0.20623	1	0.03995	1	0.25091	1	0.03763	1	1	1	0.91675	1	0.79488	1	0.95668	1	0.40057	1	0.30354	1
20q loss	16 (4%)	392	0.095599	1	0.04731	1	0.73558	1	0.45957	1	0.48565	1	0.5305	1	0.45459	1	0.63995	1	0.40171	1	0.75089	1
21q loss	77 (19%)	331	0.0344	1	0.10148	1	0.068399	1	0.32996	1	0.00256	1	0.01104	1	0.17291	1	0.12728	1	0.00281	1	0.01835	1
22q loss	159 (39%)	249	9.9999e-06	0.008	0.0051599	1	0.63575	1	0.01647	1	0.01269	1	0.02108	1	0.15261	1	0.00332	1	0.071649	1	3e-05	0.0227
xq loss	78 (19%)	330	0.0063799	1	0.25616	1	0.97071	1	0.81554	1	0.70189	1	0.57851	1	0.069739	1	0.27486	1	0.02273	1	0.01274	1
