		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	141 (27%)	374	0.63063	1	1	1	9.9999e-06	0.00946	0.61206	1	0.01332	1	0.02794	1	0.20369	1	0.04841	1	0.0442	1	0.19966	1	0.18287	1	0.096779	1
1q gain	311 (60%)	204	0.12089	1	1	1	0.0134	1	0.0080499	1	0.00102	0.735	0.0066999	1	0.12841	1	0.00031	0.234	0.61788	1	0.059439	1	0.02269	1	0.11798	1
2p gain	155 (30%)	360	0.3011	1	0.24215	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.81871	1	0.97319	1	3e-05	0.0248	4e-05	0.0326	9.9999e-06	0.00946	0.00049	0.363	0.02671	1	0.00016	0.123
2q gain	140 (27%)	375	0.12587	1	0.28908	1	9.9999e-06	0.00946	2e-05	0.0169	0.91454	1	0.70725	1	0.078609	1	0.01452	1	0.0019	1	0.088999	1	0.0153	1	0.0087699	1
3p gain	41 (8%)	474	NA	NA	NA	NA	0.00186	1	0.0372	1	0.92598	1	0.743	1	3e-05	0.0248	0.00015	0.116	0.11069	1	0.11745	1	0.55731	1	0.01495	1
3q gain	92 (18%)	423	0.056139	1	0.070799	1	5e-05	0.0403	0.00013	0.101	0.48308	1	0.099369	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.0138	1	0.03279	1	0.14312	1	0.00107	0.766
4p gain	83 (16%)	432	0.87588	1	1	1	2e-05	0.0169	0.15269	1	0.43446	1	0.11053	1	0.04297	1	0.28256	1	0.13576	1	0.23731	1	0.91463	1	0.18035	1
4q gain	47 (9%)	468	0.32977	1	0.58172	1	0.00142	1	0.8403	1	0.68026	1	0.16308	1	0.0075399	1	0.0035	1	0.071029	1	0.27448	1	0.50627	1	0.19771	1
5p gain	274 (53%)	241	0.79802	1	0.36104	1	9.9999e-06	0.00946	0.095189	1	0.050949	1	0.00339	1	0.04139	1	9.9999e-06	0.00946	0.03378	1	0.12571	1	0.65398	1	0.00016	0.123
5q gain	129 (25%)	386	0.19646	1	0.28821	1	0.0095399	1	7.9999e-05	0.0634	0.3725	1	0.31345	1	0.0062499	1	0.02668	1	0.15841	1	0.0099399	1	0.42907	1	0.072059	1
6p gain	142 (28%)	373	0.35328	1	0.087889	1	0.00034	0.256	9.9999e-06	0.00946	0.03097	1	0.85563	1	0.076059	1	0.0089499	1	0.061519	1	0.0073199	1	0.64249	1	0.0098499	1
6q gain	60 (12%)	455	1	1	1	1	0.04349	1	0.00335	1	0.43103	1	0.84638	1	0.16302	1	0.01425	1	0.0092199	1	0.0084199	1	0.98054	1	0.25597	1
7p gain	264 (51%)	251	0.85316	1	0.5382	1	9.9999e-06	0.00946	0.0015	1	0.00076999	0.561	0.0077699	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.00035	0.264	0.00016	0.123	9.9999e-06	0.00946
7q gain	217 (42%)	298	0.48089	1	0.31046	1	9.9999e-06	0.00946	0.0097499	1	0.064429	1	0.053789	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.00308	1	0.00125	0.891	0.14945	1	2e-05	0.0169
8p gain	126 (24%)	389	0.15027	1	0.25431	1	9.9999e-06	0.00946	0.095219	1	0.59026	1	0.25274	1	0.00071999	0.526	8.9999e-05	0.0709	0.42493	1	0.83909	1	0.39472	1	0.47824	1
8q gain	246 (48%)	269	0.02365	1	0.04739	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.64895	1	0.79273	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.00362	1	0.0149	1	5.9999e-05	0.0481
9p gain	45 (9%)	470	NA	NA	NA	NA	0.00129	0.917	0.13745	1	0.93908	1	0.27707	1	0.00024	0.182	0.00473	1	0.15024	1	0.63913	1	0.095249	1	0.13805	1
9q gain	34 (7%)	481	NA	NA	NA	NA	0.0306	1	0.45188	1	0.77312	1	0.70461	1	0.077239	1	0.11557	1	0.19369	1	0.80471	1	0.27039	1	0.13464	1
10p gain	112 (22%)	403	0.23589	1	0.29758	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.0314	1	0.16879	1	5e-05	0.0403	9.9999e-06	0.00946	0.00043	0.321	0.00018	0.137	0.30565	1	0.00093999	0.683
10q gain	78 (15%)	437	NA	NA	NA	NA	0.00229	1	2e-05	0.0169	0.35999	1	0.19506	1	0.00049	0.363	3e-05	0.0248	0.1467	1	0.04155	1	0.98387	1	0.064029	1
11p gain	96 (19%)	419	0.00059999	0.442	0.00097999	0.71	2e-05	0.0169	0.32706	1	0.00097999	0.71	0.678	1	0.10376	1	0.00045	0.335	0.00094999	0.69	9.9999e-06	0.00946	0.39483	1	0.02787	1
11q gain	118 (23%)	397	0.01059	1	0.01716	1	9.9999e-06	0.00946	0.01343	1	0.0085399	1	0.7729	1	0.00273	1	0.00032	0.242	0.00013	0.101	3e-05	0.0248	0.46464	1	0.00311	1
12p gain	137 (27%)	378	0.22024	1	0.04776	1	9.9999e-06	0.00946	2e-05	0.0169	0.0080199	1	0.35667	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.37075	1	2e-05	0.0169
12q gain	130 (25%)	385	0.21994	1	0.13668	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.02321	1	0.19926	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.22614	1	9.9999e-06	0.00946
13q gain	43 (8%)	472	0.41315	1	0.54349	1	0.97761	1	0.0069099	1	0.04263	1	0.03415	1	0.059299	1	0.12786	1	0.8295	1	0.36264	1	0.43102	1	0.53677	1
14q gain	126 (24%)	389	0.80446	1	0.84641	1	9.9999e-06	0.00946	0.00315	1	0.43288	1	0.1264	1	0.00016	0.123	5e-05	0.0403	6.9999e-05	0.0557	0.00171	1	0.14758	1	0.15271	1
15q gain	39 (8%)	476	0.19278	1	0.14657	1	0.79825	1	0.13738	1	0.27202	1	0.34872	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.73695	1	0.66133	1	0.14506	1	0.90159	1
16p gain	136 (26%)	379	0.53149	1	0.33624	1	0.0092399	1	0.01288	1	0.086349	1	0.02138	1	0.11149	1	0.00484	1	0.00259	1	0.72063	1	0.02652	1	0.10113	1
16q gain	102 (20%)	413	0.43914	1	0.15436	1	0.0073599	1	0.082869	1	0.01014	1	0.0268	1	0.45029	1	0.02192	1	0.00147	1	0.10999	1	0.16032	1	0.1302	1
17p gain	85 (17%)	430	0.45438	1	0.68652	1	3e-05	0.0248	0.061779	1	0.96048	1	0.69094	1	0.01242	1	0.03837	1	0.0041	1	0.062959	1	0.66094	1	0.38726	1
17q gain	191 (37%)	324	0.30588	1	0.87646	1	9.9999e-06	0.00946	4e-05	0.0326	0.29705	1	0.27227	1	4e-05	0.0326	9.9999e-06	0.00946	0.00012	0.0935	4e-05	0.0326	0.39519	1	0.00029	0.22
18p gain	93 (18%)	422	0.87699	1	0.63733	1	4e-05	0.0326	9.9999e-06	0.00946	0.18308	1	0.89439	1	0.02228	1	0.00327	1	0.02486	1	0.01784	1	0.14953	1	0.00025	0.189
18q gain	71 (14%)	444	0.59515	1	0.14659	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.071389	1	0.23367	1	2e-05	0.0169	0.00059999	0.442	0.01273	1	0.00258	1	0.04394	1	0.0031	1
19p gain	33 (6%)	482	0.19184	1	0.04183	1	0.41612	1	0.73484	1	0.70179	1	0.77391	1	0.99333	1	0.74605	1	0.43726	1	0.85753	1	0.90528	1	0.47536	1
19q gain	76 (15%)	439	0.04971	1	0.04002	1	0.00333	1	0.01682	1	0.87191	1	0.92712	1	0.21634	1	0.01432	1	0.17282	1	0.47802	1	0.42285	1	0.00228	1
20p gain	173 (34%)	342	0.070109	1	0.13928	1	0.00351	1	0.00012	0.0935	0.16826	1	0.51493	1	0.00037	0.278	9.9999e-06	0.00946	5.9999e-05	0.0481	0.00050999	0.376	0.063199	1	0.00039	0.292
20q gain	199 (39%)	316	0.00426	1	0.0089199	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.10882	1	0.2494	1	2e-05	0.0169	9.9999e-06	0.00946	2e-05	0.0169	0.00012	0.0935	0.1607	1	9.9999e-06	0.00946
21q gain	97 (19%)	418	0.53882	1	0.26404	1	0.0051499	1	0.67313	1	0.43141	1	0.02215	1	0.02981	1	6.9999e-05	0.0557	0.68153	1	0.74277	1	0.45644	1	0.40616	1
22q gain	62 (12%)	453	0.10974	1	0.11929	1	0.00421	1	0.9251	1	0.10757	1	0.28203	1	0.17669	1	0.096429	1	0.44945	1	0.56427	1	0.2782	1	0.53804	1
xq gain	77 (15%)	438	0.65782	1	0.24726	1	0.00035	0.264	0.10029	1	0.86876	1	0.15147	1	0.051589	1	0.02007	1	0.04478	1	0.15757	1	0.26849	1	0.069169	1
1p loss	82 (16%)	433	0.081149	1	0.12602	1	9.9999e-06	0.00946	0.00128	0.911	0.13255	1	0.135	1	0.00015	0.116	9.9999e-06	0.00946	0.22578	1	0.03153	1	0.13968	1	0.26319	1
1q loss	27 (5%)	488	NA	NA	NA	NA	0.13334	1	0.01941	1	0.10616	1	0.02599	1	0.072509	1	0.17309	1	0.83235	1	0.49842	1	0.92624	1	0.14622	1
2p loss	23 (4%)	492	0.75093	1	0.58044	1	0.064529	1	0.1729	1	0.54928	1	0.98898	1	0.97359	1	0.90893	1	0.04483	1	0.49122	1	0.25319	1	0.12522	1
2q loss	24 (5%)	491	NA	NA	NA	NA	0.00065999	0.484	0.04778	1	0.4634	1	0.44207	1	0.2924	1	0.39024	1	0.13976	1	0.66471	1	0.6324	1	0.22285	1
3p loss	213 (41%)	302	0.34225	1	0.11295	1	4e-05	0.0326	5.9999e-05	0.0481	0.51714	1	0.32125	1	0.04058	1	9.9999e-06	0.00946	0.01225	1	0.0098499	1	0.25647	1	0.01798	1
3q loss	146 (28%)	369	0.55328	1	0.14401	1	0.0070499	1	0.01389	1	0.80592	1	0.49114	1	0.074119	1	0.00103	0.742	0.2326	1	0.41211	1	0.38863	1	0.86626	1
4p loss	120 (23%)	395	0.18372	1	0.38245	1	3e-05	0.0248	9.9999e-06	0.00946	0.52259	1	0.69292	1	9.9999e-05	0.0786	2e-05	0.0169	2e-05	0.0169	9.9999e-06	0.00946	0.19134	1	9.9999e-05	0.0786
4q loss	136 (26%)	379	0.00045	0.335	0.0067799	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.27298	1	0.33695	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.057929	1	2e-05	0.0169
5p loss	44 (9%)	471	0.59675	1	0.30817	1	0.19828	1	0.0092199	1	0.087409	1	0.23956	1	0.0070599	1	0.00179	1	0.11425	1	0.00178	1	0.62404	1	0.00164	1
5q loss	141 (27%)	374	0.064019	1	0.03504	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.065419	1	0.054409	1	2e-05	0.0169	9.9999e-05	0.0786	9.9999e-06	0.00946	9.9999e-06	0.00946	0.46665	1	2e-05	0.0169
6p loss	105 (20%)	410	0.01292	1	0.00442	1	0.0163	1	0.21916	1	0.52171	1	0.2641	1	0.154	1	0.25411	1	0.33598	1	0.02356	1	0.73444	1	0.18071	1
6q loss	217 (42%)	298	0.24669	1	0.54158	1	0.0083199	1	0.00011	0.086	0.20034	1	0.23488	1	0.13094	1	0.00022	0.167	0.67497	1	0.00136	0.963	0.7441	1	0.17333	1
7p loss	35 (7%)	480	1	1	1	1	0.00212	1	0.01119	1	0.29068	1	0.99303	1	0.0053399	1	0.00175	1	0.090609	1	0.14123	1	0.064959	1	0.079139	1
7q loss	42 (8%)	473	0.8051	1	0.25647	1	0.058639	1	0.02009	1	0.88912	1	0.96085	1	0.11139	1	0.03752	1	0.38797	1	0.14305	1	0.7283	1	0.82491	1
8p loss	202 (39%)	313	0.13149	1	0.079709	1	9.9999e-06	0.00946	0.0098899	1	0.2657	1	0.0064899	1	5.9999e-05	0.0481	9.9999e-06	0.00946	0.0055999	1	0.01515	1	0.0076299	1	0.00305	1
8q loss	56 (11%)	459	NA	NA	NA	NA	0.03103	1	0.66423	1	0.49173	1	0.24875	1	0.23038	1	0.077759	1	0.53536	1	0.5991	1	0.14877	1	0.25443	1
9p loss	264 (51%)	251	0.051619	1	0.60067	1	0.00049	0.363	0.02111	1	0.81338	1	0.056679	1	0.00096999	0.703	5.9999e-05	0.0481	0.01724	1	0.00060999	0.448	0.19433	1	0.068399	1
9q loss	248 (48%)	267	0.49984	1	0.90197	1	0.00011	0.086	0.00022	0.167	0.54916	1	0.086609	1	0.13482	1	0.00037	0.278	0.00237	1	2e-05	0.0169	0.1739	1	0.00457	1
10p loss	110 (21%)	405	0.81523	1	0.78825	1	9.9999e-06	0.00946	0.03302	1	0.062359	1	0.01695	1	5.9999e-05	0.0481	9.9999e-06	0.00946	0.00314	1	0.2774	1	0.0243	1	0.03238	1
10q loss	132 (26%)	383	0.81636	1	0.78852	1	4e-05	0.0326	0.0307	1	0.02951	1	0.03019	1	0.00136	0.963	9.9999e-06	0.00946	0.00344	1	0.0061299	1	0.01377	1	0.00119	0.85
11p loss	112 (22%)	403	0.052689	1	0.12633	1	9.9999e-06	0.00946	0.0081499	1	0.70662	1	0.75514	1	0.00276	1	0.0070499	1	0.02514	1	0.04184	1	0.20166	1	0.04212	1
11q loss	90 (17%)	425	0.84069	1	0.4823	1	0.00069999	0.512	0.01433	1	0.30549	1	0.2314	1	0.00104	0.746	0.0063899	1	0.04227	1	0.03021	1	0.03643	1	0.21325	1
12p loss	113 (22%)	402	0.63009	1	0.88106	1	0.00101	0.729	0.24358	1	0.03209	1	0.14964	1	0.0060799	1	2e-04	0.152	0.10626	1	0.34664	1	0.98877	1	0.15346	1
12q loss	99 (19%)	416	0.55466	1	0.42459	1	4e-05	0.0326	0.084419	1	0.20076	1	0.082249	1	0.00129	0.917	7.9999e-05	0.0634	0.095649	1	0.22664	1	0.90606	1	0.21256	1
13q loss	252 (49%)	263	0.10626	1	0.62531	1	9.9999e-06	0.00946	0.054049	1	0.00333	1	0.01629	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.0099799	1	0.02249	1	0.23412	1	0.00335	1
14q loss	115 (22%)	400	0.92894	1	0.41125	1	0.02022	1	0.44222	1	0.33118	1	0.10726	1	0.03083	1	0.00463	1	0.02382	1	0.17021	1	0.19115	1	0.04775	1
15q loss	242 (47%)	273	0.10096	1	0.28151	1	9.9999e-06	0.00946	0.00013	0.101	0.053159	1	0.0054699	1	9.9999e-06	0.00946	9.9999e-06	0.00946	3e-05	0.0248	0.00461	1	0.30816	1	9.9999e-06	0.00946
16p loss	111 (22%)	404	0.452	1	0.48256	1	9.9999e-06	0.00946	6.9999e-05	0.0557	0.7442	1	0.00301	1	7.9999e-05	0.0634	0.00103	0.742	0.00358	1	0.00433	1	0.50433	1	0.00225	1
16q loss	140 (27%)	375	0.55154	1	0.6259	1	9.9999e-06	0.00946	3e-05	0.0248	0.1921	1	0.03801	1	9.9999e-06	0.00946	3e-05	0.0248	0.01043	1	0.00282	1	0.87274	1	0.00068999	0.505
17p loss	215 (42%)	300	0.55063	1	0.36203	1	9.9999e-06	0.00946	9.9999e-05	0.0786	0.0265	1	0.0090199	1	0.00103	0.742	0.00132	0.936	0.29704	1	0.12842	1	0.7698	1	0.01657	1
17q loss	58 (11%)	457	0.29309	1	0.47351	1	0.00085999	0.626	0.084189	1	0.0088499	1	0.073359	1	0.13762	1	0.50612	1	0.83621	1	0.16089	1	0.97957	1	0.80705	1
18p loss	181 (35%)	334	0.4361	1	0.45433	1	9.9999e-06	0.00946	0.60842	1	0.02286	1	0.02105	1	0.01926	1	0.00234	1	0.04008	1	0.37536	1	0.97335	1	0.59609	1
18q loss	216 (42%)	299	0.51733	1	0.42541	1	9.9999e-06	0.00946	0.23047	1	0.00409	1	3e-05	0.0248	0.00011	0.086	0.00013	0.101	0.04275	1	0.63475	1	0.59397	1	0.16729	1
19p loss	244 (47%)	271	0.81658	1	1	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.8774	1	0.38946	1	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	9.9999e-06	0.00946	0.03116	1	0.00157	1
19q loss	159 (31%)	356	0.34403	1	0.4614	1	9.9999e-06	0.00946	0.00012	0.0935	0.26674	1	0.59998	1	0.00015	0.116	5e-05	0.0403	5e-05	0.0403	2e-05	0.0169	0.28407	1	0.0091099	1
20p loss	117 (23%)	398	0.22113	1	0.24104	1	7.9999e-05	0.0634	0.00039	0.292	0.00056999	0.42	0.00263	1	0.0066499	1	0.0011	0.786	0.95131	1	0.95889	1	0.25208	1	0.01782	1
20q loss	69 (13%)	446	0.2562	1	0.49763	1	0.45616	1	0.61952	1	0.10533	1	0.21638	1	0.52944	1	0.47753	1	0.49732	1	0.63033	1	0.092799	1	0.8971	1
21q loss	165 (32%)	350	0.18464	1	0.14455	1	9.9999e-06	0.00946	0.00048	0.356	0.01461	1	0.04799	1	9.9999e-06	0.00946	9.9999e-06	0.00946	2e-05	0.0169	8.9999e-05	0.0709	0.59139	1	0.00044	0.328
22q loss	220 (43%)	295	0.12648	1	0.16756	1	9.9999e-06	0.00946	9.9999e-06	0.00946	0.88967	1	0.62011	1	9.9999e-06	0.00946	9.9999e-06	0.00946	6.9999e-05	0.0557	3e-05	0.0248	0.11168	1	0.00016	0.123
xq loss	68 (13%)	447	0.17192	1	0.25417	1	0.00046	0.342	0.00477	1	0.39866	1	0.81292	1	0.32432	1	0.58014	1	0.20939	1	0.13025	1	0.84038	1	0.45497	1
