This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 74 focal events and 12 molecular subtypes across 515 patients, 301 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p34.3 cnv correlated to 'CN_CNMF'.
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amp_1p22.3 cnv correlated to 'CN_CNMF'.
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amp_1q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_3q26.2 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4q12 cnv correlated to 'CN_CNMF'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5p13.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6p21.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_7p11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_8p11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q11.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_10p15.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12p12.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q14.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q15 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q33.3 cnv correlated to 'METHLYATION_CNMF'.
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amp_14q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_16p11.2 cnv correlated to 'CN_CNMF'.
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amp_17q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_18q11.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_22q11.22 cnv correlated to 'CN_CNMF'.
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amp_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p13.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'CN_CNMF'.
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del_3p26.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3q29 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4p16.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q31.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q22.31 cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'CN_CNMF'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p11.21 cnv correlated to 'CN_CNMF'.
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del_9p23 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_9q21.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p15.3 cnv correlated to 'CN_CNMF'.
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del_10q26.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_11q23.2 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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del_11q25 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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del_12q12 cnv correlated to 'CN_CNMF'.
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del_12q24.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_13q12.11 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_13q12.13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q34 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_17p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q21.32 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_20p13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_21q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp22.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 74 focal events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 301 significant findings detected.
|
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| amp 3q26 2 | 170 (33%) | 345 |
0.00029 (0.174) |
0.00145 (0.795) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.474 (1.00) |
0.0174 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.463 (1.00) |
2e-05 (0.0136) |
| amp 7p11 2 | 273 (53%) | 242 |
0.959 (1.00) |
0.902 (1.00) |
1e-05 (0.00888) |
0.00132 (0.73) |
0.0016 (0.87) |
0.0061 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
7e-05 (0.0447) |
1e-05 (0.00888) |
| amp 8p11 21 | 174 (34%) | 341 |
0.253 (1.00) |
0.445 (1.00) |
1e-05 (0.00888) |
0.00032 (0.19) |
0.3 (1.00) |
0.927 (1.00) |
1e-05 (0.00888) |
2e-05 (0.0136) |
0.0003 (0.179) |
0.0001 (0.0626) |
0.0194 (1.00) |
0.00019 (0.116) |
| amp 8q11 1 | 234 (45%) | 281 |
0.0049 (1.00) |
0.0393 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.255 (1.00) |
0.958 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
2e-05 (0.0136) |
0.00014 (0.0868) |
0.00111 (0.617) |
1e-05 (0.00888) |
| amp 11q13 3 | 174 (34%) | 341 |
0.00662 (1.00) |
0.00265 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0303 (1.00) |
0.911 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.571 (1.00) |
0.00017 (0.105) |
| amp 12p12 1 | 179 (35%) | 336 |
0.196 (1.00) |
0.0382 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.038 (1.00) |
0.447 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
2e-05 (0.0136) |
3e-05 (0.0199) |
0.677 (1.00) |
1e-05 (0.00888) |
| amp 12q14 1 | 170 (33%) | 345 |
0.408 (1.00) |
0.286 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.338 (1.00) |
0.551 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.348 (1.00) |
1e-05 (0.00888) |
| amp 12q15 | 171 (33%) | 344 |
0.222 (1.00) |
0.137 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.209 (1.00) |
0.0971 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.352 (1.00) |
1e-05 (0.00888) |
| amp 14q13 3 | 230 (45%) | 285 |
0.797 (1.00) |
0.539 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0571 (1.00) |
0.866 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
2e-05 (0.0136) |
1e-05 (0.00888) |
0.185 (1.00) |
0.00013 (0.0809) |
| amp 17q12 | 227 (44%) | 288 |
0.0901 (1.00) |
0.0334 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.31 (1.00) |
0.0169 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.543 (1.00) |
1e-05 (0.00888) |
| amp 17q23 1 | 249 (48%) | 266 |
0.0788 (1.00) |
0.303 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.241 (1.00) |
0.0566 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
3e-05 (0.0199) |
0.701 (1.00) |
3e-05 (0.0199) |
| amp 19q12 | 139 (27%) | 376 |
0.0509 (1.00) |
0.0104 (1.00) |
8e-05 (0.0506) |
1e-05 (0.00888) |
0.766 (1.00) |
0.353 (1.00) |
0.0002 (0.122) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00032 (0.19) |
0.0611 (1.00) |
4e-05 (0.0261) |
| amp 20q13 33 | 250 (49%) | 265 |
0.00555 (1.00) |
0.0447 (1.00) |
1e-05 (0.00888) |
3e-05 (0.0199) |
0.0435 (1.00) |
0.363 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0587 (1.00) |
3e-05 (0.0199) |
| del 4p16 3 | 130 (25%) | 385 |
0.596 (1.00) |
0.309 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.837 (1.00) |
0.398 (1.00) |
2e-05 (0.0136) |
2e-05 (0.0136) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.611 (1.00) |
0.00035 (0.207) |
| del 4q34 3 | 186 (36%) | 329 |
0.00193 (1.00) |
0.00309 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.136 (1.00) |
0.255 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0239 (1.00) |
1e-05 (0.00888) |
| del 5q12 1 | 179 (35%) | 336 |
0.26 (1.00) |
0.166 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0301 (1.00) |
0.405 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0228 (1.00) |
1e-05 (0.00888) |
| del 5q31 1 | 210 (41%) | 305 |
0.093 (1.00) |
0.242 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0836 (1.00) |
0.429 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.359 (1.00) |
1e-05 (0.00888) |
| del 19p13 3 | 275 (53%) | 240 |
0.573 (1.00) |
0.813 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.511 (1.00) |
0.235 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.12 (1.00) |
0.00031 (0.185) |
| del 19p13 2 | 268 (52%) | 247 |
0.693 (1.00) |
1 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.895 (1.00) |
0.0822 (1.00) |
2e-05 (0.0136) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0557 (1.00) |
0.00012 (0.0749) |
| del 21q11 2 | 176 (34%) | 339 |
0.0606 (1.00) |
0.0475 (1.00) |
1e-05 (0.00888) |
0.00022 (0.133) |
0.0124 (1.00) |
0.233 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
2e-05 (0.0136) |
0.49 (1.00) |
1e-05 (0.00888) |
| del 22q13 32 | 250 (49%) | 265 |
0.0255 (1.00) |
0.0808 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.739 (1.00) |
0.443 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.016 (1.00) |
1e-05 (0.00888) |
| amp 5p13 1 | 304 (59%) | 211 |
0.262 (1.00) |
1 (1.00) |
1e-05 (0.00888) |
0.00487 (1.00) |
0.101 (1.00) |
0.0496 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0001 (0.0626) |
0.00026 (0.156) |
0.225 (1.00) |
1e-05 (0.00888) |
| amp 8q24 21 | 324 (63%) | 191 |
0.0349 (1.00) |
0.0878 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.505 (1.00) |
0.79 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00102 (0.571) |
0.0743 (1.00) |
1e-05 (0.00888) |
| amp 10p15 1 | 141 (27%) | 374 |
0.0229 (1.00) |
0.0159 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00682 (1.00) |
0.0556 (1.00) |
4e-05 (0.0261) |
1e-05 (0.00888) |
5e-05 (0.0324) |
2e-05 (0.0136) |
0.0379 (1.00) |
0.00068 (0.388) |
| amp 18q11 2 | 104 (20%) | 411 |
0.194 (1.00) |
0.0196 (1.00) |
0.001 (0.561) |
1e-05 (0.00888) |
0.0785 (1.00) |
0.232 (1.00) |
8e-05 (0.0506) |
0.00012 (0.0749) |
0.00014 (0.0868) |
5e-05 (0.0324) |
0.457 (1.00) |
7e-05 (0.0447) |
| del 3p21 31 | 247 (48%) | 268 |
0.133 (1.00) |
0.348 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0345 (1.00) |
0.219 (1.00) |
0.0169 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.66 (1.00) |
2e-05 (0.0136) |
| del 8p23 2 | 252 (49%) | 263 |
0.00497 (1.00) |
0.00981 (1.00) |
1e-05 (0.00888) |
0.00061 (0.35) |
0.0224 (1.00) |
0.00038 (0.223) |
1e-05 (0.00888) |
1e-05 (0.00888) |
5e-05 (0.0324) |
0.00448 (1.00) |
0.0137 (1.00) |
0.00017 (0.105) |
| del 9q21 11 | 257 (50%) | 258 |
0.0337 (1.00) |
0.484 (1.00) |
3e-05 (0.0199) |
6e-05 (0.0385) |
0.242 (1.00) |
0.0417 (1.00) |
0.00264 (1.00) |
6e-05 (0.0385) |
5e-05 (0.0324) |
1e-05 (0.00888) |
0.219 (1.00) |
0.00019 (0.116) |
| del 3p26 2 | 232 (45%) | 283 |
0.0942 (1.00) |
0.241 (1.00) |
2e-05 (0.0136) |
0.00045 (0.263) |
0.0551 (1.00) |
0.377 (1.00) |
0.0933 (1.00) |
1e-05 (0.00888) |
3e-05 (0.0199) |
0.00013 (0.0809) |
0.813 (1.00) |
0.00026 (0.156) |
| del 10q26 3 | 147 (29%) | 368 |
0.616 (1.00) |
0.339 (1.00) |
1e-05 (0.00888) |
0.014 (1.00) |
0.00131 (0.726) |
0.00316 (1.00) |
3e-05 (0.0199) |
1e-05 (0.00888) |
0.00791 (1.00) |
0.00021 (0.127) |
0.0229 (1.00) |
0.00031 (0.185) |
| del 15q11 2 | 263 (51%) | 252 |
0.168 (1.00) |
0.3 (1.00) |
1e-05 (0.00888) |
0.00052 (0.3) |
0.036 (1.00) |
0.00177 (0.954) |
1e-05 (0.00888) |
1e-05 (0.00888) |
2e-05 (0.0136) |
0.0154 (1.00) |
0.271 (1.00) |
1e-05 (0.00888) |
| amp 5p15 33 | 334 (65%) | 181 |
0.878 (1.00) |
0.805 (1.00) |
1e-05 (0.00888) |
0.0691 (1.00) |
0.0154 (1.00) |
0.0125 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00132 (0.73) |
0.00094 (0.528) |
0.406 (1.00) |
1e-05 (0.00888) |
| amp 7q31 2 | 216 (42%) | 299 |
0.482 (1.00) |
0.311 (1.00) |
1e-05 (0.00888) |
0.00148 (0.808) |
0.0828 (1.00) |
0.12 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00056 (0.322) |
0.00305 (1.00) |
0.144 (1.00) |
1e-05 (0.00888) |
| amp 8p11 23 | 137 (27%) | 378 |
0.294 (1.00) |
0.101 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.692 (1.00) |
0.96 (1.00) |
1e-05 (0.00888) |
0.00017 (0.105) |
0.0168 (1.00) |
0.00514 (1.00) |
0.504 (1.00) |
0.0174 (1.00) |
| amp xq28 | 158 (31%) | 357 |
0.299 (1.00) |
0.243 (1.00) |
1e-05 (0.00888) |
7e-05 (0.0447) |
0.32 (1.00) |
0.552 (1.00) |
5e-05 (0.0324) |
4e-05 (0.0261) |
0.0101 (1.00) |
0.0896 (1.00) |
0.26 (1.00) |
0.0005 (0.289) |
| del 13q14 2 | 282 (55%) | 233 |
0.00867 (1.00) |
0.0649 (1.00) |
1e-05 (0.00888) |
0.0234 (1.00) |
0.00478 (1.00) |
0.00148 (0.808) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00168 (0.909) |
0.00698 (1.00) |
0.0492 (1.00) |
9e-05 (0.0566) |
| del 16q23 1 | 169 (33%) | 346 |
0.0603 (1.00) |
0.877 (1.00) |
2e-05 (0.0136) |
9e-05 (0.0566) |
0.219 (1.00) |
0.00092 (0.518) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.0278 (1.00) |
0.00255 (1.00) |
0.861 (1.00) |
0.0006 (0.344) |
| del 17p13 3 | 278 (54%) | 237 |
0.385 (1.00) |
0.787 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00049 (0.284) |
0.00063 (0.36) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00879 (1.00) |
0.0182 (1.00) |
0.603 (1.00) |
0.00113 (0.627) |
| del 18q21 32 | 254 (49%) | 261 |
0.113 (1.00) |
0.0795 (1.00) |
1e-05 (0.00888) |
0.768 (1.00) |
0.0193 (1.00) |
0.00016 (0.0987) |
3e-05 (0.0199) |
6e-05 (0.0385) |
0.0109 (1.00) |
0.165 (1.00) |
0.862 (1.00) |
0.0555 (1.00) |
| del 18q23 | 249 (48%) | 266 |
0.0292 (1.00) |
0.0255 (1.00) |
1e-05 (0.00888) |
0.596 (1.00) |
0.0072 (1.00) |
7e-05 (0.0447) |
1e-05 (0.00888) |
4e-05 (0.0261) |
0.00747 (1.00) |
0.183 (1.00) |
0.804 (1.00) |
0.057 (1.00) |
| del 19q13 33 | 194 (38%) | 321 |
0.274 (1.00) |
0.256 (1.00) |
1e-05 (0.00888) |
0.00067 (0.383) |
0.204 (1.00) |
0.212 (1.00) |
0.00192 (1.00) |
2e-05 (0.0136) |
2e-05 (0.0136) |
1e-05 (0.00888) |
0.577 (1.00) |
0.0119 (1.00) |
| amp 1q21 3 | 376 (73%) | 139 |
0.361 (1.00) |
0.521 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.11 (1.00) |
0.0293 (1.00) |
0.00464 (1.00) |
1e-05 (0.00888) |
0.00396 (1.00) |
0.00073 (0.415) |
0.00441 (1.00) |
0.24 (1.00) |
| del 1p36 13 | 120 (23%) | 395 |
0.796 (1.00) |
0.381 (1.00) |
1e-05 (0.00888) |
0.0025 (1.00) |
0.695 (1.00) |
0.103 (1.00) |
9e-05 (0.0566) |
1e-05 (0.00888) |
0.0113 (1.00) |
0.134 (1.00) |
0.011 (1.00) |
0.0245 (1.00) |
| del 1p13 1 | 151 (29%) | 364 |
0.619 (1.00) |
0.454 (1.00) |
1e-05 (0.00888) |
0.00091 (0.513) |
0.126 (1.00) |
0.0547 (1.00) |
0.00017 (0.105) |
0.00024 (0.144) |
0.156 (1.00) |
0.00222 (1.00) |
0.841 (1.00) |
0.777 (1.00) |
| del 3q29 | 135 (26%) | 380 |
0.711 (1.00) |
0.616 (1.00) |
0.125 (1.00) |
0.00021 (0.127) |
0.139 (1.00) |
0.0281 (1.00) |
8e-05 (0.0506) |
1e-05 (0.00888) |
0.853 (1.00) |
0.0426 (1.00) |
0.147 (1.00) |
0.246 (1.00) |
| del 9p21 3 | 292 (57%) | 223 |
0.522 (1.00) |
0.804 (1.00) |
0.00023 (0.139) |
0.132 (1.00) |
0.511 (1.00) |
0.0294 (1.00) |
2e-05 (0.0136) |
2e-05 (0.0136) |
0.14 (1.00) |
0.0024 (1.00) |
0.0442 (1.00) |
0.106 (1.00) |
| del 11p15 5 | 142 (28%) | 373 |
0.265 (1.00) |
0.0318 (1.00) |
1e-05 (0.00888) |
0.00139 (0.764) |
0.624 (1.00) |
0.334 (1.00) |
0.00043 (0.252) |
1e-05 (0.00888) |
0.00019 (0.116) |
0.00043 (0.252) |
0.0695 (1.00) |
0.00046 (0.268) |
| del 12q24 33 | 130 (25%) | 385 |
0.0624 (1.00) |
0.0716 (1.00) |
1e-05 (0.00888) |
0.0686 (1.00) |
0.0626 (1.00) |
0.185 (1.00) |
4e-05 (0.0261) |
1e-05 (0.00888) |
0.147 (1.00) |
0.018 (1.00) |
0.554 (1.00) |
0.463 (1.00) |
| del 13q12 11 | 293 (57%) | 222 |
0.00106 (0.593) |
0.0384 (1.00) |
1e-05 (0.00888) |
0.0114 (1.00) |
0.00667 (1.00) |
0.00047 (0.274) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00319 (1.00) |
0.00375 (1.00) |
0.245 (1.00) |
0.00047 (0.274) |
| del 13q12 13 | 292 (57%) | 223 |
0.00865 (1.00) |
0.0638 (1.00) |
1e-05 (0.00888) |
0.00482 (1.00) |
0.00883 (1.00) |
0.00083 (0.47) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00442 (1.00) |
0.00568 (1.00) |
0.213 (1.00) |
0.00054 (0.311) |
| del 13q34 | 241 (47%) | 274 |
0.0358 (1.00) |
0.112 (1.00) |
1e-05 (0.00888) |
0.166 (1.00) |
0.00133 (0.733) |
0.0148 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.00978 (1.00) |
0.0271 (1.00) |
0.226 (1.00) |
0.0177 (1.00) |
| del 20p13 | 130 (25%) | 385 |
0.106 (1.00) |
0.223 (1.00) |
1e-05 (0.00888) |
0.00236 (1.00) |
0.00344 (1.00) |
0.00044 (0.257) |
2e-05 (0.0136) |
1e-05 (0.00888) |
0.954 (1.00) |
0.706 (1.00) |
0.368 (1.00) |
0.0157 (1.00) |
| del xp22 2 | 144 (28%) | 371 |
0.689 (1.00) |
0.892 (1.00) |
1e-05 (0.00888) |
0.00205 (1.00) |
0.092 (1.00) |
0.0114 (1.00) |
0.00017 (0.105) |
0.0003 (0.179) |
0.341 (1.00) |
0.586 (1.00) |
0.962 (1.00) |
0.104 (1.00) |
| amp 6p21 1 | 189 (37%) | 326 |
0.674 (1.00) |
0.254 (1.00) |
1e-05 (0.00888) |
1e-05 (0.00888) |
0.1 (1.00) |
0.467 (1.00) |
0.00357 (1.00) |
0.0008 (0.454) |
0.0258 (1.00) |
0.00471 (1.00) |
0.349 (1.00) |
0.0275 (1.00) |
| del 6q22 31 | 255 (50%) | 260 |
0.542 (1.00) |
0.141 (1.00) |
0.00483 (1.00) |
1e-05 (0.00888) |
0.129 (1.00) |
0.0161 (1.00) |
0.0274 (1.00) |
0.00015 (0.0927) |
0.706 (1.00) |
0.00147 (0.804) |
0.666 (1.00) |
0.287 (1.00) |
| del 11q23 2 | 120 (23%) | 395 |
0.431 (1.00) |
0.846 (1.00) |
1e-05 (0.00888) |
0.00441 (1.00) |
0.0376 (1.00) |
0.336 (1.00) |
7e-05 (0.0447) |
0.00289 (1.00) |
0.00199 (1.00) |
0.0407 (1.00) |
0.0456 (1.00) |
0.31 (1.00) |
| del 11q25 | 116 (23%) | 399 |
0.107 (1.00) |
0.485 (1.00) |
3e-05 (0.0199) |
0.011 (1.00) |
0.00419 (1.00) |
0.148 (1.00) |
0.00023 (0.139) |
0.0111 (1.00) |
0.086 (1.00) |
0.175 (1.00) |
0.119 (1.00) |
0.456 (1.00) |
| amp 1p34 3 | 138 (27%) | 377 |
0.552 (1.00) |
0.58 (1.00) |
1e-05 (0.00888) |
0.26 (1.00) |
0.011 (1.00) |
0.16 (1.00) |
0.0524 (1.00) |
0.00191 (1.00) |
0.114 (1.00) |
0.00944 (1.00) |
0.305 (1.00) |
0.00652 (1.00) |
| amp 1p22 3 | 141 (27%) | 374 |
0.876 (1.00) |
1 (1.00) |
1e-05 (0.00888) |
0.125 (1.00) |
0.0166 (1.00) |
0.508 (1.00) |
0.0419 (1.00) |
0.0157 (1.00) |
0.123 (1.00) |
0.0379 (1.00) |
0.424 (1.00) |
0.176 (1.00) |
| amp 4q12 | 96 (19%) | 419 |
0.704 (1.00) |
0.256 (1.00) |
1e-05 (0.00888) |
0.117 (1.00) |
0.141 (1.00) |
0.0145 (1.00) |
0.00428 (1.00) |
0.00739 (1.00) |
0.00695 (1.00) |
0.00169 (0.913) |
0.827 (1.00) |
0.0011 (0.613) |
| amp 13q33 3 | 77 (15%) | 438 |
0.464 (1.00) |
0.52 (1.00) |
0.0902 (1.00) |
8e-05 (0.0506) |
0.194 (1.00) |
0.923 (1.00) |
0.474 (1.00) |
0.0211 (1.00) |
0.152 (1.00) |
0.12 (1.00) |
0.652 (1.00) |
0.0415 (1.00) |
| amp 16p11 2 | 168 (33%) | 347 |
0.802 (1.00) |
0.392 (1.00) |
1e-05 (0.00888) |
0.00704 (1.00) |
0.155 (1.00) |
0.226 (1.00) |
0.331 (1.00) |
0.0587 (1.00) |
0.0345 (1.00) |
0.105 (1.00) |
0.406 (1.00) |
0.182 (1.00) |
| amp 22q11 22 | 90 (17%) | 425 |
0.27 (1.00) |
0.127 (1.00) |
1e-05 (0.00888) |
0.362 (1.00) |
0.0129 (1.00) |
0.211 (1.00) |
0.561 (1.00) |
0.0619 (1.00) |
0.0398 (1.00) |
0.0419 (1.00) |
0.729 (1.00) |
0.0166 (1.00) |
| del 2q22 1 | 45 (9%) | 470 |
0.869 (1.00) |
0.781 (1.00) |
0.00036 (0.212) |
0.0113 (1.00) |
0.186 (1.00) |
0.449 (1.00) |
0.0241 (1.00) |
0.00517 (1.00) |
0.0169 (1.00) |
0.00468 (1.00) |
0.948 (1.00) |
0.038 (1.00) |
| del 6q26 | 257 (50%) | 258 |
0.369 (1.00) |
0.334 (1.00) |
0.00037 (0.218) |
0.0007 (0.398) |
0.0753 (1.00) |
0.0823 (1.00) |
0.103 (1.00) |
0.00489 (1.00) |
0.771 (1.00) |
0.0135 (1.00) |
0.516 (1.00) |
0.191 (1.00) |
| del 8p11 21 | 125 (24%) | 390 |
0.794 (1.00) |
0.508 (1.00) |
1e-05 (0.00888) |
0.175 (1.00) |
0.78 (1.00) |
0.0351 (1.00) |
0.00836 (1.00) |
0.059 (1.00) |
0.152 (1.00) |
0.573 (1.00) |
0.541 (1.00) |
0.13 (1.00) |
| del 9p23 | 286 (56%) | 229 |
0.522 (1.00) |
0.806 (1.00) |
0.00047 (0.274) |
0.262 (1.00) |
0.794 (1.00) |
0.243 (1.00) |
0.00353 (1.00) |
6e-05 (0.0385) |
0.12 (1.00) |
0.0281 (1.00) |
0.285 (1.00) |
0.215 (1.00) |
| del 10p15 3 | 125 (24%) | 390 |
1 (1.00) |
0.845 (1.00) |
5e-05 (0.0324) |
0.0107 (1.00) |
0.138 (1.00) |
0.121 (1.00) |
0.00531 (1.00) |
0.00084 (0.475) |
0.00142 (0.78) |
0.0166 (1.00) |
0.0325 (1.00) |
0.0126 (1.00) |
| del 12q12 | 98 (19%) | 417 |
0.6 (1.00) |
0.751 (1.00) |
0.00033 (0.195) |
0.117 (1.00) |
0.136 (1.00) |
0.0676 (1.00) |
0.00637 (1.00) |
0.0229 (1.00) |
0.0562 (1.00) |
0.212 (1.00) |
0.902 (1.00) |
0.0263 (1.00) |
| del 3q11 1 | 139 (27%) | 376 |
0.612 (1.00) |
0.686 (1.00) |
0.13 (1.00) |
0.022 (1.00) |
0.77 (1.00) |
0.766 (1.00) |
0.0844 (1.00) |
0.0016 (0.87) |
0.215 (1.00) |
0.694 (1.00) |
0.603 (1.00) |
0.859 (1.00) |
| del 6q11 1 | 139 (27%) | 376 |
0.953 (1.00) |
1 (1.00) |
0.312 (1.00) |
0.0885 (1.00) |
0.394 (1.00) |
0.924 (1.00) |
0.664 (1.00) |
0.835 (1.00) |
0.0308 (1.00) |
0.201 (1.00) |
0.732 (1.00) |
0.0774 (1.00) |
| del 12p13 2 | 139 (27%) | 376 |
0.256 (1.00) |
0.899 (1.00) |
0.00106 (0.593) |
0.00529 (1.00) |
0.166 (1.00) |
0.0633 (1.00) |
0.00163 (0.883) |
0.00292 (1.00) |
0.802 (1.00) |
0.977 (1.00) |
0.491 (1.00) |
0.0852 (1.00) |
| del 14q32 33 | 150 (29%) | 365 |
0.701 (1.00) |
0.286 (1.00) |
0.00472 (1.00) |
0.738 (1.00) |
0.771 (1.00) |
0.347 (1.00) |
0.213 (1.00) |
0.0971 (1.00) |
0.021 (1.00) |
0.287 (1.00) |
0.218 (1.00) |
0.0722 (1.00) |
| del 20q13 12 | 82 (16%) | 433 |
0.171 (1.00) |
0.579 (1.00) |
0.45 (1.00) |
0.264 (1.00) |
0.11 (1.00) |
0.129 (1.00) |
0.185 (1.00) |
0.0415 (1.00) |
0.147 (1.00) |
0.158 (1.00) |
0.044 (1.00) |
0.257 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S1. Gene #1: 'amp_1p34.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 1(1P34.3) MUTATED | 84 | 39 | 15 |
| AMP PEAK 1(1P34.3) WILD-TYPE | 107 | 190 | 80 |
Figure S1. Get High-res Image Gene #1: 'amp_1p34.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S2. Gene #2: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 2(1P22.3) MUTATED | 84 | 41 | 16 |
| AMP PEAK 2(1P22.3) WILD-TYPE | 107 | 188 | 79 |
Figure S2. Get High-res Image Gene #2: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S3. Gene #3: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 3(1Q21.3) MUTATED | 153 | 140 | 83 |
| AMP PEAK 3(1Q21.3) WILD-TYPE | 38 | 89 | 12 |
Figure S3. Get High-res Image Gene #3: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S4. Gene #3: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 3(1Q21.3) MUTATED | 66 | 113 | 85 | 63 |
| AMP PEAK 3(1Q21.3) WILD-TYPE | 30 | 12 | 23 | 53 |
Figure S4. Get High-res Image Gene #3: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S5. Gene #3: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 3(1Q21.3) MUTATED | 65 | 39 | 23 | 60 | 44 | 43 | 38 | 5 | 36 |
| AMP PEAK 3(1Q21.3) WILD-TYPE | 18 | 18 | 21 | 24 | 2 | 8 | 11 | 13 | 18 |
Figure S5. Get High-res Image Gene #3: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00029 (Fisher's exact test), Q value = 0.17
Table S6. Gene #4: 'amp_3q26.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| AMP PEAK 4(3Q26.2) MUTATED | 0 | 6 | 0 | 4 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 5 | 3 | 12 | 2 |
Figure S6. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S7. Gene #4: 'amp_3q26.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 4(3Q26.2) MUTATED | 85 | 44 | 41 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 106 | 185 | 54 |
Figure S7. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S8. Gene #4: 'amp_3q26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 4(3Q26.2) MUTATED | 7 | 58 | 37 | 40 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 89 | 67 | 71 | 76 |
Figure S8. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S9. Gene #4: 'amp_3q26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 4(3Q26.2) MUTATED | 56 | 7 | 32 | 50 | 17 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 82 | 105 | 44 | 56 | 37 |
Figure S9. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S10. Gene #4: 'amp_3q26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 4(3Q26.2) MUTATED | 23 | 5 | 20 | 57 | 5 | 17 | 18 | 5 | 12 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 60 | 52 | 24 | 27 | 41 | 34 | 31 | 13 | 42 |
Figure S10. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S11. Gene #4: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 4(3Q26.2) MUTATED | 41 | 103 | 24 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 148 | 125 | 69 |
Figure S11. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S12. Gene #4: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 4(3Q26.2) MUTATED | 12 | 67 | 35 | 54 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 59 | 131 | 106 | 46 |
Figure S12. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S13. Gene #4: 'amp_3q26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 4(3Q26.2) MUTATED | 15 | 101 | 25 |
| AMP PEAK 4(3Q26.2) WILD-TYPE | 88 | 147 | 58 |
Figure S13. Get High-res Image Gene #4: 'amp_3q26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S14. Gene #5: 'amp_4q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 5(4Q12) MUTATED | 62 | 21 | 13 |
| AMP PEAK 5(4Q12) WILD-TYPE | 129 | 208 | 82 |
Figure S14. Get High-res Image Gene #5: 'amp_4q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S15. Gene #6: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 6(5P15.33) MUTATED | 171 | 110 | 53 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 20 | 119 | 42 |
Figure S15. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S16. Gene #6: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 6(5P15.33) MUTATED | 111 | 63 | 33 | 73 | 33 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 27 | 49 | 43 | 33 | 21 |
Figure S16. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S17. Gene #6: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 6(5P15.33) MUTATED | 65 | 33 | 28 | 70 | 20 | 34 | 30 | 0 | 33 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 18 | 24 | 16 | 14 | 26 | 17 | 19 | 18 | 21 |
Figure S17. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S18. Gene #6: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 6(5P15.33) MUTATED | 43 | 187 | 56 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 60 | 61 | 27 |
Figure S18. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S19. Gene #7: 'amp_5p13.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 7(5P13.1) MUTATED | 154 | 96 | 54 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 37 | 133 | 41 |
Figure S19. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S20. Gene #7: 'amp_5p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 7(5P13.1) MUTATED | 94 | 55 | 29 | 76 | 31 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 44 | 57 | 47 | 30 | 23 |
Figure S20. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S21. Gene #7: 'amp_5p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 7(5P13.1) MUTATED | 59 | 29 | 22 | 67 | 18 | 36 | 24 | 0 | 30 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 24 | 28 | 22 | 17 | 28 | 15 | 25 | 18 | 24 |
Figure S21. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-04 (Fisher's exact test), Q value = 0.063
Table S22. Gene #7: 'amp_5p13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 7(5P13.1) MUTATED | 90 | 156 | 57 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 99 | 72 | 36 |
Figure S22. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.16
Table S23. Gene #7: 'amp_5p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 7(5P13.1) MUTATED | 41 | 126 | 64 | 72 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 30 | 72 | 77 | 28 |
Figure S23. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S24. Gene #7: 'amp_5p13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 7(5P13.1) MUTATED | 37 | 175 | 50 |
| AMP PEAK 7(5P13.1) WILD-TYPE | 66 | 73 | 33 |
Figure S24. Get High-res Image Gene #7: 'amp_5p13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S25. Gene #8: 'amp_6p21.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 8(6P21.1) MUTATED | 80 | 58 | 51 |
| AMP PEAK 8(6P21.1) WILD-TYPE | 111 | 171 | 44 |
Figure S25. Get High-res Image Gene #8: 'amp_6p21.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S26. Gene #8: 'amp_6p21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 8(6P21.1) MUTATED | 33 | 76 | 42 | 18 |
| AMP PEAK 8(6P21.1) WILD-TYPE | 63 | 49 | 66 | 98 |
Figure S26. Get High-res Image Gene #8: 'amp_6p21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S27. Gene #9: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 9(7P11.2) MUTATED | 145 | 89 | 39 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 46 | 140 | 56 |
Figure S27. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S28. Gene #9: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 9(7P11.2) MUTATED | 106 | 36 | 40 | 46 | 28 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 32 | 76 | 36 | 60 | 26 |
Figure S28. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S29. Gene #9: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 9(7P11.2) MUTATED | 53 | 23 | 35 | 48 | 9 | 23 | 32 | 2 | 31 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 30 | 34 | 9 | 36 | 37 | 28 | 17 | 16 | 23 |
Figure S29. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S30. Gene #9: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 9(7P11.2) MUTATED | 71 | 134 | 65 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 118 | 94 | 28 |
Figure S30. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S31. Gene #9: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 9(7P11.2) MUTATED | 22 | 127 | 64 | 57 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 49 | 71 | 77 | 43 |
Figure S31. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7e-05 (Fisher's exact test), Q value = 0.045
Table S32. Gene #9: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 9(7P11.2) MUTATED | 62 | 107 | 65 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 83 | 91 | 26 |
Figure S32. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S33. Gene #9: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 9(7P11.2) MUTATED | 31 | 154 | 49 |
| AMP PEAK 9(7P11.2) WILD-TYPE | 72 | 94 | 34 |
Figure S33. Get High-res Image Gene #9: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S34. Gene #10: 'amp_7q31.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 10(7Q31.2) MUTATED | 116 | 63 | 37 |
| AMP PEAK 10(7Q31.2) WILD-TYPE | 75 | 166 | 58 |
Figure S34. Get High-res Image Gene #10: 'amp_7q31.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S35. Gene #10: 'amp_7q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 10(7Q31.2) MUTATED | 86 | 24 | 33 | 36 | 23 |
| AMP PEAK 10(7Q31.2) WILD-TYPE | 52 | 88 | 43 | 70 | 31 |
Figure S35. Get High-res Image Gene #10: 'amp_7q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S36. Gene #10: 'amp_7q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 10(7Q31.2) MUTATED | 46 | 15 | 33 | 39 | 5 | 15 | 23 | 2 | 24 |
| AMP PEAK 10(7Q31.2) WILD-TYPE | 37 | 42 | 11 | 45 | 41 | 36 | 26 | 16 | 30 |
Figure S36. Get High-res Image Gene #10: 'amp_7q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S37. Gene #10: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 10(7Q31.2) MUTATED | 22 | 124 | 37 |
| AMP PEAK 10(7Q31.2) WILD-TYPE | 81 | 124 | 46 |
Figure S37. Get High-res Image Gene #10: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S38. Gene #11: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 11(8P11.23) MUTATED | 39 | 36 | 62 |
| AMP PEAK 11(8P11.23) WILD-TYPE | 152 | 193 | 33 |
Figure S38. Get High-res Image Gene #11: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S39. Gene #11: 'amp_8p11.23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 11(8P11.23) MUTATED | 18 | 54 | 25 | 22 |
| AMP PEAK 11(8P11.23) WILD-TYPE | 78 | 71 | 83 | 94 |
Figure S39. Get High-res Image Gene #11: 'amp_8p11.23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S40. Gene #11: 'amp_8p11.23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 11(8P11.23) MUTATED | 28 | 16 | 25 | 49 | 12 |
| AMP PEAK 11(8P11.23) WILD-TYPE | 110 | 96 | 51 | 57 | 42 |
Figure S40. Get High-res Image Gene #11: 'amp_8p11.23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.1
Table S41. Gene #11: 'amp_8p11.23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 11(8P11.23) MUTATED | 22 | 7 | 10 | 27 | 12 | 23 | 19 | 0 | 10 |
| AMP PEAK 11(8P11.23) WILD-TYPE | 61 | 50 | 34 | 57 | 34 | 28 | 30 | 18 | 44 |
Figure S41. Get High-res Image Gene #11: 'amp_8p11.23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S42. Gene #12: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 12(8P11.21) MUTATED | 55 | 46 | 73 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 136 | 183 | 22 |
Figure S42. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00032 (Fisher's exact test), Q value = 0.19
Table S43. Gene #12: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 12(8P11.21) MUTATED | 21 | 61 | 37 | 33 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 75 | 64 | 71 | 83 |
Figure S43. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S44. Gene #12: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 12(8P11.21) MUTATED | 44 | 19 | 25 | 63 | 14 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 94 | 93 | 51 | 43 | 40 |
Figure S44. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S45. Gene #12: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 12(8P11.21) MUTATED | 26 | 9 | 20 | 35 | 15 | 30 | 18 | 0 | 12 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 57 | 48 | 24 | 49 | 31 | 21 | 31 | 18 | 42 |
Figure S45. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-04 (Fisher's exact test), Q value = 0.18
Table S46. Gene #12: 'amp_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 12(8P11.21) MUTATED | 45 | 97 | 31 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 144 | 131 | 62 |
Figure S46. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.063
Table S47. Gene #12: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 12(8P11.21) MUTATED | 18 | 75 | 32 | 48 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 53 | 123 | 109 | 52 |
Figure S47. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.12
Table S48. Gene #12: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 12(8P11.21) MUTATED | 19 | 102 | 27 |
| AMP PEAK 12(8P11.21) WILD-TYPE | 84 | 146 | 56 |
Figure S48. Get High-res Image Gene #12: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S49. Gene #13: 'amp_8q11.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 13(8Q11.1) MUTATED | 102 | 58 | 74 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 89 | 171 | 21 |
Figure S49. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S50. Gene #13: 'amp_8q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 13(8Q11.1) MUTATED | 28 | 78 | 57 | 41 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 68 | 47 | 51 | 75 |
Figure S50. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S51. Gene #13: 'amp_8q11.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 13(8Q11.1) MUTATED | 67 | 28 | 32 | 71 | 21 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 71 | 84 | 44 | 35 | 33 |
Figure S51. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S52. Gene #13: 'amp_8q11.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 13(8Q11.1) MUTATED | 35 | 16 | 26 | 42 | 18 | 37 | 24 | 0 | 21 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 48 | 41 | 18 | 42 | 28 | 14 | 25 | 18 | 33 |
Figure S52. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S53. Gene #13: 'amp_8q11.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 13(8Q11.1) MUTATED | 59 | 127 | 46 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 130 | 101 | 47 |
Figure S53. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00014 (Fisher's exact test), Q value = 0.087
Table S54. Gene #13: 'amp_8q11.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 13(8Q11.1) MUTATED | 28 | 102 | 44 | 58 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 43 | 96 | 97 | 42 |
Figure S54. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S55. Gene #13: 'amp_8q11.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 13(8Q11.1) MUTATED | 27 | 136 | 35 |
| AMP PEAK 13(8Q11.1) WILD-TYPE | 76 | 112 | 48 |
Figure S55. Get High-res Image Gene #13: 'amp_8q11.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S56. Gene #14: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 14(8Q24.21) MUTATED | 142 | 98 | 84 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 49 | 131 | 11 |
Figure S56. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S57. Gene #14: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 14(8Q24.21) MUTATED | 43 | 97 | 80 | 61 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 53 | 28 | 28 | 55 |
Figure S57. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S58. Gene #14: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 14(8Q24.21) MUTATED | 103 | 49 | 39 | 86 | 26 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 35 | 63 | 37 | 20 | 28 |
Figure S58. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S59. Gene #14: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 14(8Q24.21) MUTATED | 52 | 25 | 39 | 57 | 27 | 45 | 30 | 0 | 28 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 31 | 32 | 5 | 27 | 19 | 6 | 19 | 18 | 26 |
Figure S59. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S60. Gene #14: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 14(8Q24.21) MUTATED | 92 | 166 | 63 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 97 | 62 | 30 |
Figure S60. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S61. Gene #14: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 14(8Q24.21) MUTATED | 42 | 176 | 53 |
| AMP PEAK 14(8Q24.21) WILD-TYPE | 61 | 72 | 30 |
Figure S61. Get High-res Image Gene #14: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S62. Gene #15: 'amp_10p15.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 15(10P15.1) MUTATED | 59 | 37 | 45 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 132 | 192 | 50 |
Figure S62. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S63. Gene #15: 'amp_10p15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 15(10P15.1) MUTATED | 8 | 51 | 39 | 23 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 88 | 74 | 69 | 93 |
Figure S63. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.026
Table S64. Gene #15: 'amp_10p15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 15(10P15.1) MUTATED | 37 | 17 | 27 | 45 | 8 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 101 | 95 | 49 | 61 | 46 |
Figure S64. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S65. Gene #15: 'amp_10p15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 15(10P15.1) MUTATED | 22 | 4 | 13 | 22 | 14 | 23 | 25 | 0 | 11 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 61 | 53 | 31 | 62 | 32 | 28 | 24 | 18 | 43 |
Figure S65. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S66. Gene #15: 'amp_10p15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 15(10P15.1) MUTATED | 32 | 84 | 22 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 157 | 144 | 71 |
Figure S66. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S67. Gene #15: 'amp_10p15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 15(10P15.1) MUTATED | 16 | 69 | 18 | 35 |
| AMP PEAK 15(10P15.1) WILD-TYPE | 55 | 129 | 123 | 65 |
Figure S67. Get High-res Image Gene #15: 'amp_10p15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S68. Gene #16: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 16(11Q13.3) MUTATED | 93 | 34 | 47 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 98 | 195 | 48 |
Figure S68. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S69. Gene #16: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 16(11Q13.3) MUTATED | 15 | 56 | 48 | 30 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 81 | 69 | 60 | 86 |
Figure S69. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S70. Gene #16: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 16(11Q13.3) MUTATED | 58 | 21 | 17 | 56 | 12 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 80 | 91 | 59 | 50 | 42 |
Figure S70. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S71. Gene #16: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 16(11Q13.3) MUTATED | 31 | 15 | 18 | 33 | 4 | 34 | 15 | 2 | 12 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 52 | 42 | 26 | 51 | 42 | 17 | 34 | 16 | 42 |
Figure S71. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S72. Gene #16: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 16(11Q13.3) MUTATED | 35 | 105 | 31 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 154 | 123 | 62 |
Figure S72. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S73. Gene #16: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 16(11Q13.3) MUTATED | 11 | 83 | 30 | 47 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 60 | 115 | 111 | 53 |
Figure S73. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.1
Table S74. Gene #16: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 16(11Q13.3) MUTATED | 18 | 98 | 30 |
| AMP PEAK 16(11Q13.3) WILD-TYPE | 85 | 150 | 53 |
Figure S74. Get High-res Image Gene #16: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S75. Gene #17: 'amp_12p12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 17(12P12.1) MUTATED | 74 | 51 | 54 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 117 | 178 | 41 |
Figure S75. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S76. Gene #17: 'amp_12p12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 17(12P12.1) MUTATED | 10 | 57 | 43 | 40 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 86 | 68 | 65 | 76 |
Figure S76. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S77. Gene #17: 'amp_12p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 17(12P12.1) MUTATED | 55 | 10 | 38 | 53 | 16 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 83 | 102 | 38 | 53 | 38 |
Figure S77. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S78. Gene #17: 'amp_12p12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 17(12P12.1) MUTATED | 28 | 7 | 21 | 31 | 5 | 32 | 28 | 5 | 15 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 55 | 50 | 23 | 53 | 41 | 19 | 21 | 13 | 39 |
Figure S78. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S79. Gene #17: 'amp_12p12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 17(12P12.1) MUTATED | 44 | 103 | 29 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 145 | 125 | 64 |
Figure S79. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S80. Gene #17: 'amp_12p12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 17(12P12.1) MUTATED | 13 | 81 | 35 | 47 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 58 | 117 | 106 | 53 |
Figure S80. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S81. Gene #17: 'amp_12p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 17(12P12.1) MUTATED | 17 | 107 | 25 |
| AMP PEAK 17(12P12.1) WILD-TYPE | 86 | 141 | 58 |
Figure S81. Get High-res Image Gene #17: 'amp_12p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S82. Gene #18: 'amp_12q14.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 18(12Q14.1) MUTATED | 67 | 48 | 55 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 124 | 181 | 40 |
Figure S82. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S83. Gene #18: 'amp_12q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 18(12Q14.1) MUTATED | 11 | 63 | 33 | 38 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 85 | 62 | 75 | 78 |
Figure S83. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S84. Gene #18: 'amp_12q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 18(12Q14.1) MUTATED | 42 | 13 | 34 | 58 | 12 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 96 | 99 | 42 | 48 | 42 |
Figure S84. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S85. Gene #18: 'amp_12q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 18(12Q14.1) MUTATED | 18 | 11 | 18 | 28 | 6 | 36 | 30 | 2 | 10 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 65 | 46 | 26 | 56 | 40 | 15 | 19 | 16 | 44 |
Figure S85. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S86. Gene #18: 'amp_12q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 18(12Q14.1) MUTATED | 34 | 107 | 27 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 155 | 121 | 66 |
Figure S86. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S87. Gene #18: 'amp_12q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 18(12Q14.1) MUTATED | 13 | 79 | 25 | 51 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 58 | 119 | 116 | 49 |
Figure S87. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S88. Gene #18: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 18(12Q14.1) MUTATED | 11 | 108 | 24 |
| AMP PEAK 18(12Q14.1) WILD-TYPE | 92 | 140 | 59 |
Figure S88. Get High-res Image Gene #18: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S89. Gene #19: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 19(12Q15) MUTATED | 65 | 51 | 55 |
| AMP PEAK 19(12Q15) WILD-TYPE | 126 | 178 | 40 |
Figure S89. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S90. Gene #19: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 19(12Q15) MUTATED | 11 | 64 | 36 | 35 |
| AMP PEAK 19(12Q15) WILD-TYPE | 85 | 61 | 72 | 81 |
Figure S90. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S91. Gene #19: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 19(12Q15) MUTATED | 41 | 13 | 35 | 58 | 12 |
| AMP PEAK 19(12Q15) WILD-TYPE | 97 | 99 | 41 | 48 | 42 |
Figure S91. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S92. Gene #19: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 19(12Q15) MUTATED | 18 | 11 | 17 | 28 | 6 | 36 | 29 | 4 | 10 |
| AMP PEAK 19(12Q15) WILD-TYPE | 65 | 46 | 27 | 56 | 40 | 15 | 20 | 14 | 44 |
Figure S92. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S93. Gene #19: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 19(12Q15) MUTATED | 35 | 110 | 25 |
| AMP PEAK 19(12Q15) WILD-TYPE | 154 | 118 | 68 |
Figure S93. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S94. Gene #19: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 19(12Q15) MUTATED | 12 | 77 | 29 | 52 |
| AMP PEAK 19(12Q15) WILD-TYPE | 59 | 121 | 112 | 48 |
Figure S94. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S95. Gene #19: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 19(12Q15) MUTATED | 13 | 106 | 26 |
| AMP PEAK 19(12Q15) WILD-TYPE | 90 | 142 | 57 |
Figure S95. Get High-res Image Gene #19: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8e-05 (Fisher's exact test), Q value = 0.051
Table S96. Gene #20: 'amp_13q33.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 20(13Q33.3) MUTATED | 13 | 34 | 11 | 8 |
| AMP PEAK 20(13Q33.3) WILD-TYPE | 83 | 91 | 97 | 108 |
Figure S96. Get High-res Image Gene #20: 'amp_13q33.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S97. Gene #21: 'amp_14q13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 21(14Q13.3) MUTATED | 103 | 63 | 64 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 88 | 166 | 31 |
Figure S97. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S98. Gene #21: 'amp_14q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 21(14Q13.3) MUTATED | 29 | 77 | 54 | 38 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 67 | 48 | 54 | 78 |
Figure S98. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S99. Gene #21: 'amp_14q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 21(14Q13.3) MUTATED | 81 | 39 | 10 | 74 | 15 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 57 | 73 | 66 | 32 | 39 |
Figure S99. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S100. Gene #21: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 21(14Q13.3) MUTATED | 47 | 25 | 21 | 55 | 9 | 40 | 8 | 0 | 14 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 36 | 32 | 23 | 29 | 37 | 11 | 41 | 18 | 40 |
Figure S100. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S101. Gene #21: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 21(14Q13.3) MUTATED | 55 | 125 | 47 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 134 | 103 | 46 |
Figure S101. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S102. Gene #21: 'amp_14q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 21(14Q13.3) MUTATED | 28 | 112 | 34 | 53 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 43 | 86 | 107 | 47 |
Figure S102. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00013 (Fisher's exact test), Q value = 0.081
Table S103. Gene #21: 'amp_14q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 21(14Q13.3) MUTATED | 27 | 125 | 41 |
| AMP PEAK 21(14Q13.3) WILD-TYPE | 76 | 123 | 42 |
Figure S103. Get High-res Image Gene #21: 'amp_14q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S104. Gene #22: 'amp_16p11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 22(16P11.2) MUTATED | 85 | 49 | 34 |
| AMP PEAK 22(16P11.2) WILD-TYPE | 106 | 180 | 61 |
Figure S104. Get High-res Image Gene #22: 'amp_16p11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S105. Gene #23: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 23(17Q12) MUTATED | 122 | 52 | 53 |
| AMP PEAK 23(17Q12) WILD-TYPE | 69 | 177 | 42 |
Figure S105. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S106. Gene #23: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 23(17Q12) MUTATED | 20 | 68 | 61 | 40 |
| AMP PEAK 23(17Q12) WILD-TYPE | 76 | 57 | 47 | 76 |
Figure S106. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S107. Gene #23: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 23(17Q12) MUTATED | 84 | 30 | 24 | 57 | 20 |
| AMP PEAK 23(17Q12) WILD-TYPE | 54 | 82 | 52 | 49 | 34 |
Figure S107. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S108. Gene #23: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 23(17Q12) MUTATED | 43 | 20 | 26 | 51 | 8 | 28 | 19 | 1 | 19 |
| AMP PEAK 23(17Q12) WILD-TYPE | 40 | 37 | 18 | 33 | 38 | 23 | 30 | 17 | 35 |
Figure S108. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S109. Gene #23: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 23(17Q12) MUTATED | 58 | 129 | 38 |
| AMP PEAK 23(17Q12) WILD-TYPE | 131 | 99 | 55 |
Figure S109. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S110. Gene #23: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 23(17Q12) MUTATED | 21 | 103 | 40 | 61 |
| AMP PEAK 23(17Q12) WILD-TYPE | 50 | 95 | 101 | 39 |
Figure S110. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S111. Gene #23: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 23(17Q12) MUTATED | 24 | 125 | 38 |
| AMP PEAK 23(17Q12) WILD-TYPE | 79 | 123 | 45 |
Figure S111. Get High-res Image Gene #23: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S112. Gene #24: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 24(17Q23.1) MUTATED | 130 | 64 | 55 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 61 | 165 | 40 |
Figure S112. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S113. Gene #24: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 24(17Q23.1) MUTATED | 22 | 68 | 74 | 46 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 74 | 57 | 34 | 70 |
Figure S113. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S114. Gene #24: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 24(17Q23.1) MUTATED | 95 | 37 | 30 | 54 | 21 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 43 | 75 | 46 | 52 | 33 |
Figure S114. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S115. Gene #24: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 24(17Q23.1) MUTATED | 52 | 25 | 30 | 49 | 7 | 28 | 24 | 0 | 22 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 31 | 32 | 14 | 35 | 39 | 23 | 25 | 18 | 32 |
Figure S115. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S116. Gene #24: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 24(17Q23.1) MUTATED | 68 | 136 | 43 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 121 | 92 | 50 |
Figure S116. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S117. Gene #24: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 24(17Q23.1) MUTATED | 26 | 111 | 48 | 62 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 45 | 87 | 93 | 38 |
Figure S117. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S118. Gene #24: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 24(17Q23.1) MUTATED | 28 | 134 | 43 |
| AMP PEAK 24(17Q23.1) WILD-TYPE | 75 | 114 | 40 |
Figure S118. Get High-res Image Gene #24: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S119. Gene #25: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 25(18Q11.2) MUTATED | 6 | 51 | 23 | 14 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 90 | 74 | 85 | 102 |
Figure S119. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.051
Table S120. Gene #25: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 25(18Q11.2) MUTATED | 24 | 12 | 19 | 37 | 6 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 114 | 100 | 57 | 69 | 48 |
Figure S120. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.075
Table S121. Gene #25: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 25(18Q11.2) MUTATED | 12 | 5 | 7 | 27 | 6 | 21 | 10 | 4 | 6 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 71 | 52 | 37 | 57 | 40 | 30 | 39 | 14 | 48 |
Figure S121. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00014 (Fisher's exact test), Q value = 0.087
Table S122. Gene #25: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 25(18Q11.2) MUTATED | 21 | 62 | 20 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 168 | 166 | 73 |
Figure S122. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S123. Gene #25: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 25(18Q11.2) MUTATED | 6 | 43 | 19 | 35 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 65 | 155 | 122 | 65 |
Figure S123. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7e-05 (Fisher's exact test), Q value = 0.045
Table S124. Gene #25: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 25(18Q11.2) MUTATED | 10 | 70 | 12 |
| AMP PEAK 25(18Q11.2) WILD-TYPE | 93 | 178 | 71 |
Figure S124. Get High-res Image Gene #25: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8e-05 (Fisher's exact test), Q value = 0.051
Table S125. Gene #26: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 26(19Q12) MUTATED | 56 | 43 | 40 |
| AMP PEAK 26(19Q12) WILD-TYPE | 135 | 186 | 55 |
Figure S125. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S126. Gene #26: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 26(19Q12) MUTATED | 15 | 56 | 22 | 31 |
| AMP PEAK 26(19Q12) WILD-TYPE | 81 | 69 | 86 | 85 |
Figure S126. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-04 (Fisher's exact test), Q value = 0.12
Table S127. Gene #26: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 26(19Q12) MUTATED | 38 | 17 | 28 | 40 | 8 |
| AMP PEAK 26(19Q12) WILD-TYPE | 100 | 95 | 48 | 66 | 46 |
Figure S127. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S128. Gene #26: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 26(19Q12) MUTATED | 18 | 5 | 14 | 32 | 12 | 17 | 23 | 1 | 9 |
| AMP PEAK 26(19Q12) WILD-TYPE | 65 | 52 | 30 | 52 | 34 | 34 | 26 | 17 | 45 |
Figure S128. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S129. Gene #26: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 26(19Q12) MUTATED | 30 | 86 | 23 |
| AMP PEAK 26(19Q12) WILD-TYPE | 159 | 142 | 70 |
Figure S129. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00032 (Fisher's exact test), Q value = 0.19
Table S130. Gene #26: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 26(19Q12) MUTATED | 14 | 61 | 24 | 40 |
| AMP PEAK 26(19Q12) WILD-TYPE | 57 | 137 | 117 | 60 |
Figure S130. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.026
Table S131. Gene #26: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 26(19Q12) MUTATED | 19 | 89 | 13 |
| AMP PEAK 26(19Q12) WILD-TYPE | 84 | 159 | 70 |
Figure S131. Get High-res Image Gene #26: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S132. Gene #27: 'amp_20q13.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 27(20Q13.33) MUTATED | 106 | 79 | 65 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 85 | 150 | 30 |
Figure S132. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S133. Gene #27: 'amp_20q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 27(20Q13.33) MUTATED | 36 | 83 | 48 | 45 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 60 | 42 | 60 | 71 |
Figure S133. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S134. Gene #27: 'amp_20q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 27(20Q13.33) MUTATED | 71 | 41 | 27 | 75 | 19 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 67 | 71 | 49 | 31 | 35 |
Figure S134. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S135. Gene #27: 'amp_20q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 27(20Q13.33) MUTATED | 34 | 21 | 28 | 56 | 21 | 36 | 17 | 2 | 18 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 49 | 36 | 16 | 28 | 25 | 15 | 32 | 16 | 36 |
Figure S135. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S136. Gene #27: 'amp_20q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 27(20Q13.33) MUTATED | 66 | 138 | 42 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 123 | 90 | 51 |
Figure S136. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S137. Gene #27: 'amp_20q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 27(20Q13.33) MUTATED | 24 | 106 | 53 | 63 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 47 | 92 | 88 | 37 |
Figure S137. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S138. Gene #27: 'amp_20q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 27(20Q13.33) MUTATED | 30 | 140 | 37 |
| AMP PEAK 27(20Q13.33) WILD-TYPE | 73 | 108 | 46 |
Figure S138. Get High-res Image Gene #27: 'amp_20q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S139. Gene #28: 'amp_22q11.22' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 28(22Q11.22) MUTATED | 54 | 23 | 13 |
| AMP PEAK 28(22Q11.22) WILD-TYPE | 137 | 206 | 82 |
Figure S139. Get High-res Image Gene #28: 'amp_22q11.22' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S140. Gene #29: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| AMP PEAK 29(XQ28) MUTATED | 94 | 34 | 30 |
| AMP PEAK 29(XQ28) WILD-TYPE | 97 | 195 | 65 |
Figure S140. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.045
Table S141. Gene #29: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| AMP PEAK 29(XQ28) MUTATED | 16 | 47 | 44 | 25 |
| AMP PEAK 29(XQ28) WILD-TYPE | 80 | 78 | 64 | 91 |
Figure S141. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S142. Gene #29: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| AMP PEAK 29(XQ28) MUTATED | 65 | 23 | 17 | 32 | 12 |
| AMP PEAK 29(XQ28) WILD-TYPE | 73 | 89 | 59 | 74 | 42 |
Figure S142. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.026
Table S143. Gene #29: 'amp_xq28' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| AMP PEAK 29(XQ28) MUTATED | 32 | 13 | 23 | 34 | 6 | 13 | 13 | 0 | 15 |
| AMP PEAK 29(XQ28) WILD-TYPE | 51 | 44 | 21 | 50 | 40 | 38 | 36 | 18 | 39 |
Figure S143. Get High-res Image Gene #29: 'amp_xq28' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S144. Gene #30: 'del_1p36.13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 1(1P36.13) MUTATED | 30 | 45 | 45 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 161 | 184 | 50 |
Figure S144. Get High-res Image Gene #30: 'del_1p36.13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.057
Table S145. Gene #30: 'del_1p36.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 1(1P36.13) MUTATED | 31 | 15 | 23 | 38 | 5 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 107 | 97 | 53 | 68 | 49 |
Figure S145. Get High-res Image Gene #30: 'del_1p36.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S146. Gene #30: 'del_1p36.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 1(1P36.13) MUTATED | 12 | 9 | 15 | 17 | 11 | 25 | 17 | 2 | 4 |
| DEL PEAK 1(1P36.13) WILD-TYPE | 71 | 48 | 29 | 67 | 35 | 26 | 32 | 16 | 50 |
Figure S146. Get High-res Image Gene #30: 'del_1p36.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S147. Gene #31: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 2(1P13.1) MUTATED | 49 | 47 | 55 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 142 | 182 | 40 |
Figure S147. Get High-res Image Gene #31: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.1
Table S148. Gene #31: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 2(1P13.1) MUTATED | 34 | 26 | 23 | 50 | 10 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 104 | 86 | 53 | 56 | 44 |
Figure S148. Get High-res Image Gene #31: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00024 (Fisher's exact test), Q value = 0.14
Table S149. Gene #31: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 2(1P13.1) MUTATED | 18 | 15 | 15 | 22 | 20 | 27 | 16 | 2 | 8 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 65 | 42 | 29 | 62 | 26 | 24 | 33 | 16 | 46 |
Figure S149. Get High-res Image Gene #31: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00036 (Fisher's exact test), Q value = 0.21
Table S150. Gene #32: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 3(2Q22.1) MUTATED | 23 | 8 | 14 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 168 | 221 | 81 |
Figure S150. Get High-res Image Gene #32: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S151. Gene #33: 'del_3p26.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 4(3P26.2) MUTATED | 103 | 76 | 53 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 88 | 153 | 42 |
Figure S151. Get High-res Image Gene #33: 'del_3p26.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S152. Gene #33: 'del_3p26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 4(3P26.2) MUTATED | 28 | 24 | 17 | 57 | 13 | 35 | 28 | 0 | 18 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 55 | 33 | 27 | 27 | 33 | 16 | 21 | 18 | 36 |
Figure S152. Get High-res Image Gene #33: 'del_3p26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S153. Gene #33: 'del_3p26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 4(3P26.2) MUTATED | 60 | 115 | 53 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 129 | 113 | 40 |
Figure S153. Get High-res Image Gene #33: 'del_3p26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.081
Table S154. Gene #33: 'del_3p26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 4(3P26.2) MUTATED | 30 | 85 | 49 | 64 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 41 | 113 | 92 | 36 |
Figure S154. Get High-res Image Gene #33: 'del_3p26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00026 (Fisher's exact test), Q value = 0.16
Table S155. Gene #33: 'del_3p26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 4(3P26.2) MUTATED | 30 | 131 | 37 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 73 | 117 | 46 |
Figure S155. Get High-res Image Gene #33: 'del_3p26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S156. Gene #34: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 5(3P21.31) MUTATED | 110 | 78 | 59 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 81 | 151 | 36 |
Figure S156. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S157. Gene #34: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 5(3P21.31) MUTATED | 37 | 85 | 45 | 47 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 59 | 40 | 63 | 69 |
Figure S157. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S158. Gene #34: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 5(3P21.31) MUTATED | 28 | 25 | 19 | 61 | 13 | 37 | 30 | 1 | 19 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 55 | 32 | 25 | 23 | 33 | 14 | 19 | 17 | 35 |
Figure S158. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S159. Gene #34: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 5(3P21.31) MUTATED | 64 | 125 | 54 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 125 | 103 | 39 |
Figure S159. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S160. Gene #34: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 5(3P21.31) MUTATED | 32 | 93 | 49 | 69 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 39 | 105 | 92 | 31 |
Figure S160. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S161. Gene #34: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 5(3P21.31) MUTATED | 31 | 141 | 39 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 72 | 107 | 44 |
Figure S161. Get High-res Image Gene #34: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.13
Table S162. Gene #36: 'del_3q29' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 7(3Q29) MUTATED | 35 | 43 | 30 | 15 |
| DEL PEAK 7(3Q29) WILD-TYPE | 61 | 82 | 78 | 101 |
Figure S162. Get High-res Image Gene #36: 'del_3q29' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.051
Table S163. Gene #36: 'del_3q29' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 7(3Q29) MUTATED | 22 | 40 | 13 | 41 | 15 |
| DEL PEAK 7(3Q29) WILD-TYPE | 116 | 72 | 63 | 65 | 39 |
Figure S163. Get High-res Image Gene #36: 'del_3q29' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S164. Gene #36: 'del_3q29' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 7(3Q29) MUTATED | 17 | 19 | 5 | 12 | 22 | 29 | 14 | 0 | 13 |
| DEL PEAK 7(3Q29) WILD-TYPE | 66 | 38 | 39 | 72 | 24 | 22 | 35 | 18 | 41 |
Figure S164. Get High-res Image Gene #36: 'del_3q29' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S165. Gene #37: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 8(4P16.3) MUTATED | 54 | 34 | 42 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 137 | 195 | 53 |
Figure S165. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S166. Gene #37: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 8(4P16.3) MUTATED | 7 | 49 | 25 | 32 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 89 | 76 | 83 | 84 |
Figure S166. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S167. Gene #37: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 8(4P16.3) MUTATED | 35 | 12 | 20 | 45 | 13 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 103 | 100 | 56 | 61 | 41 |
Figure S167. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S168. Gene #37: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 8(4P16.3) MUTATED | 18 | 9 | 9 | 39 | 4 | 23 | 11 | 2 | 10 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 65 | 48 | 35 | 45 | 42 | 28 | 38 | 16 | 44 |
Figure S168. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S169. Gene #37: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 8(4P16.3) MUTATED | 24 | 80 | 25 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 165 | 148 | 68 |
Figure S169. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S170. Gene #37: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 8(4P16.3) MUTATED | 6 | 57 | 25 | 41 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 65 | 141 | 116 | 59 |
Figure S170. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00035 (Fisher's exact test), Q value = 0.21
Table S171. Gene #37: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 8(4P16.3) MUTATED | 13 | 80 | 18 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 90 | 168 | 65 |
Figure S171. Get High-res Image Gene #37: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S172. Gene #38: 'del_4q34.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 9(4Q34.3) MUTATED | 78 | 49 | 59 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 113 | 180 | 36 |
Figure S172. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S173. Gene #38: 'del_4q34.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 9(4Q34.3) MUTATED | 9 | 75 | 35 | 41 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 87 | 50 | 73 | 75 |
Figure S173. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S174. Gene #38: 'del_4q34.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 9(4Q34.3) MUTATED | 45 | 18 | 37 | 64 | 14 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 93 | 94 | 39 | 42 | 40 |
Figure S174. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S175. Gene #38: 'del_4q34.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 9(4Q34.3) MUTATED | 24 | 9 | 6 | 50 | 8 | 36 | 29 | 1 | 15 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 59 | 48 | 38 | 34 | 38 | 15 | 20 | 17 | 39 |
Figure S175. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S176. Gene #38: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 9(4Q34.3) MUTATED | 39 | 117 | 29 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 150 | 111 | 64 |
Figure S176. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S177. Gene #38: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 9(4Q34.3) MUTATED | 12 | 80 | 29 | 64 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 59 | 118 | 112 | 36 |
Figure S177. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S178. Gene #38: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 9(4Q34.3) MUTATED | 20 | 119 | 20 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 83 | 129 | 63 |
Figure S178. Get High-res Image Gene #38: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S179. Gene #39: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 10(5Q12.1) MUTATED | 97 | 40 | 42 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 94 | 189 | 53 |
Figure S179. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S180. Gene #39: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 10(5Q12.1) MUTATED | 14 | 63 | 38 | 35 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 82 | 62 | 70 | 81 |
Figure S180. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S181. Gene #39: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 10(5Q12.1) MUTATED | 57 | 19 | 29 | 52 | 12 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 81 | 93 | 47 | 54 | 42 |
Figure S181. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S182. Gene #39: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 10(5Q12.1) MUTATED | 30 | 11 | 13 | 46 | 6 | 24 | 24 | 1 | 14 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 53 | 46 | 31 | 38 | 40 | 27 | 25 | 17 | 40 |
Figure S182. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S183. Gene #39: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 10(5Q12.1) MUTATED | 36 | 115 | 25 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 153 | 113 | 68 |
Figure S183. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S184. Gene #39: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 10(5Q12.1) MUTATED | 12 | 75 | 33 | 56 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 59 | 123 | 108 | 44 |
Figure S184. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S185. Gene #39: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 10(5Q12.1) MUTATED | 14 | 113 | 21 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 89 | 135 | 62 |
Figure S185. Get High-res Image Gene #39: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S186. Gene #40: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 11(5Q31.1) MUTATED | 106 | 53 | 51 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 85 | 176 | 44 |
Figure S186. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S187. Gene #40: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 11(5Q31.1) MUTATED | 18 | 70 | 47 | 41 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 78 | 55 | 61 | 75 |
Figure S187. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S188. Gene #40: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 11(5Q31.1) MUTATED | 66 | 23 | 33 | 59 | 15 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 72 | 89 | 43 | 47 | 39 |
Figure S188. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S189. Gene #40: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 11(5Q31.1) MUTATED | 36 | 12 | 16 | 47 | 10 | 30 | 26 | 1 | 18 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 47 | 45 | 28 | 37 | 36 | 21 | 23 | 17 | 36 |
Figure S189. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S190. Gene #40: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 11(5Q31.1) MUTATED | 46 | 130 | 31 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 143 | 98 | 62 |
Figure S190. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S191. Gene #40: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 11(5Q31.1) MUTATED | 18 | 89 | 36 | 64 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 53 | 109 | 105 | 36 |
Figure S191. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S192. Gene #40: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 11(5Q31.1) MUTATED | 21 | 130 | 28 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 82 | 118 | 55 |
Figure S192. Get High-res Image Gene #40: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S193. Gene #42: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 13(6Q22.31) MUTATED | 53 | 65 | 70 | 36 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 43 | 60 | 38 | 80 |
Figure S193. Get High-res Image Gene #42: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.093
Table S194. Gene #42: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 13(6Q22.31) MUTATED | 46 | 24 | 21 | 31 | 34 | 33 | 19 | 4 | 29 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 37 | 33 | 23 | 53 | 12 | 18 | 30 | 14 | 25 |
Figure S194. Get High-res Image Gene #42: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00037 (Fisher's exact test), Q value = 0.22
Table S195. Gene #43: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 14(6Q26) MUTATED | 102 | 94 | 61 |
| DEL PEAK 14(6Q26) WILD-TYPE | 89 | 135 | 34 |
Figure S195. Get High-res Image Gene #43: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S196. Gene #44: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 15(8P23.2) MUTATED | 137 | 73 | 42 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 54 | 156 | 53 |
Figure S196. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00038 (Fisher's exact test), Q value = 0.22
Table S197. Gene #44: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 15(8P23.2) MUTATED | 20 | 9 | 33 | 13 | 11 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 20 | 24 | 12 | 18 | 21 |
Figure S197. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S198. Gene #44: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 15(8P23.2) MUTATED | 96 | 39 | 32 | 50 | 21 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 42 | 73 | 44 | 56 | 33 |
Figure S198. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S199. Gene #44: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 15(8P23.2) MUTATED | 49 | 22 | 31 | 56 | 10 | 20 | 24 | 2 | 24 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 34 | 35 | 13 | 28 | 36 | 31 | 25 | 16 | 30 |
Figure S199. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S200. Gene #44: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 15(8P23.2) MUTATED | 68 | 127 | 54 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 121 | 101 | 39 |
Figure S200. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.1
Table S201. Gene #44: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 15(8P23.2) MUTATED | 32 | 137 | 41 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 71 | 111 | 42 |
Figure S201. Get High-res Image Gene #44: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S202. Gene #45: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 16(8P11.21) MUTATED | 84 | 36 | 5 |
| DEL PEAK 16(8P11.21) WILD-TYPE | 107 | 193 | 90 |
Figure S202. Get High-res Image Gene #45: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.039
Table S203. Gene #46: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 17(9P23) MUTATED | 41 | 31 | 19 | 54 | 22 | 26 | 42 | 10 | 23 |
| DEL PEAK 17(9P23) WILD-TYPE | 42 | 26 | 25 | 30 | 24 | 25 | 7 | 8 | 31 |
Figure S203. Get High-res Image Gene #46: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00023 (Fisher's exact test), Q value = 0.14
Table S204. Gene #47: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 18(9P21.3) MUTATED | 130 | 112 | 50 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 61 | 117 | 45 |
Figure S204. Get High-res Image Gene #47: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S205. Gene #47: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 18(9P21.3) MUTATED | 73 | 60 | 64 | 51 | 27 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 65 | 52 | 12 | 55 | 27 |
Figure S205. Get High-res Image Gene #47: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S206. Gene #47: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 18(9P21.3) MUTATED | 43 | 33 | 21 | 54 | 22 | 24 | 44 | 11 | 23 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 40 | 24 | 23 | 30 | 24 | 27 | 5 | 7 | 31 |
Figure S206. Get High-res Image Gene #47: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S207. Gene #48: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 19(9Q21.11) MUTATED | 106 | 89 | 62 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 85 | 140 | 33 |
Figure S207. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.039
Table S208. Gene #48: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 19(9Q21.11) MUTATED | 37 | 83 | 44 | 54 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 59 | 42 | 64 | 62 |
Figure S208. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.039
Table S209. Gene #48: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 19(9Q21.11) MUTATED | 34 | 27 | 19 | 52 | 15 | 37 | 32 | 4 | 24 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 49 | 30 | 25 | 32 | 31 | 14 | 17 | 14 | 30 |
Figure S209. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S210. Gene #48: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 19(9Q21.11) MUTATED | 70 | 126 | 58 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 119 | 102 | 35 |
Figure S210. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S211. Gene #48: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 19(9Q21.11) MUTATED | 26 | 102 | 55 | 71 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 45 | 96 | 86 | 29 |
Figure S211. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.12
Table S212. Gene #48: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 19(9Q21.11) MUTATED | 34 | 142 | 40 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 69 | 106 | 43 |
Figure S212. Get High-res Image Gene #48: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.032
Table S213. Gene #49: 'del_10p15.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 20(10P15.3) MUTATED | 65 | 37 | 23 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 126 | 192 | 72 |
Figure S213. Get High-res Image Gene #49: 'del_10p15.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S214. Gene #50: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 21(10Q26.3) MUTATED | 79 | 42 | 26 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 112 | 187 | 69 |
Figure S214. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S215. Gene #50: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 21(10Q26.3) MUTATED | 59 | 19 | 13 | 34 | 16 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 79 | 93 | 63 | 72 | 38 |
Figure S215. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S216. Gene #50: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 21(10Q26.3) MUTATED | 30 | 16 | 15 | 43 | 1 | 11 | 9 | 2 | 14 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 53 | 41 | 29 | 41 | 45 | 40 | 40 | 16 | 40 |
Figure S216. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.13
Table S217. Gene #50: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 21(10Q26.3) MUTATED | 10 | 60 | 32 | 43 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 61 | 138 | 109 | 57 |
Figure S217. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00031 (Fisher's exact test), Q value = 0.18
Table S218. Gene #50: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 21(10Q26.3) MUTATED | 14 | 84 | 26 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 89 | 164 | 57 |
Figure S218. Get High-res Image Gene #50: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S219. Gene #51: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 22(11P15.5) MUTATED | 79 | 35 | 28 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 112 | 194 | 67 |
Figure S219. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S220. Gene #51: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 22(11P15.5) MUTATED | 23 | 6 | 11 | 34 | 8 | 13 | 23 | 0 | 13 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 60 | 51 | 33 | 50 | 38 | 38 | 26 | 18 | 41 |
Figure S220. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.12
Table S221. Gene #51: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 22(11P15.5) MUTATED | 35 | 83 | 22 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 154 | 145 | 71 |
Figure S221. Get High-res Image Gene #51: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S222. Gene #52: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 23(11Q23.2) MUTATED | 39 | 39 | 42 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 152 | 190 | 53 |
Figure S222. Get High-res Image Gene #52: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.045
Table S223. Gene #52: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 23(11Q23.2) MUTATED | 26 | 13 | 25 | 37 | 10 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 112 | 99 | 51 | 69 | 44 |
Figure S223. Get High-res Image Gene #52: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S224. Gene #53: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 24(11Q25) MUTATED | 43 | 35 | 38 |
| DEL PEAK 24(11Q25) WILD-TYPE | 148 | 194 | 57 |
Figure S224. Get High-res Image Gene #53: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.14
Table S225. Gene #53: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 24(11Q25) MUTATED | 24 | 14 | 26 | 35 | 10 |
| DEL PEAK 24(11Q25) WILD-TYPE | 114 | 98 | 50 | 71 | 44 |
Figure S225. Get High-res Image Gene #53: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00033 (Fisher's exact test), Q value = 0.2
Table S226. Gene #55: 'del_12q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 26(12Q12) MUTATED | 53 | 35 | 10 |
| DEL PEAK 26(12Q12) WILD-TYPE | 138 | 194 | 85 |
Figure S226. Get High-res Image Gene #55: 'del_12q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S227. Gene #56: 'del_12q24.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 27(12Q24.33) MUTATED | 65 | 55 | 10 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 126 | 174 | 85 |
Figure S227. Get High-res Image Gene #56: 'del_12q24.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.026
Table S228. Gene #56: 'del_12q24.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 27(12Q24.33) MUTATED | 46 | 35 | 7 | 16 | 18 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 92 | 77 | 69 | 90 | 36 |
Figure S228. Get High-res Image Gene #56: 'del_12q24.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S229. Gene #56: 'del_12q24.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 27(12Q24.33) MUTATED | 31 | 18 | 4 | 24 | 15 | 2 | 6 | 2 | 20 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 52 | 39 | 40 | 60 | 31 | 49 | 43 | 16 | 34 |
Figure S229. Get High-res Image Gene #56: 'del_12q24.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S230. Gene #57: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 28(13Q12.11) MUTATED | 147 | 79 | 67 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 44 | 150 | 28 |
Figure S230. Get High-res Image Gene #57: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S231. Gene #57: 'del_13q12.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 28(13Q12.11) MUTATED | 101 | 45 | 30 | 76 | 27 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 37 | 67 | 46 | 30 | 27 |
Figure S231. Get High-res Image Gene #57: 'del_13q12.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S232. Gene #57: 'del_13q12.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 28(13Q12.11) MUTATED | 60 | 24 | 29 | 61 | 14 | 37 | 24 | 1 | 29 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 23 | 33 | 15 | 23 | 32 | 14 | 25 | 17 | 25 |
Figure S232. Get High-res Image Gene #57: 'del_13q12.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S233. Gene #58: 'del_13q12.13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 29(13Q12.13) MUTATED | 147 | 77 | 68 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 44 | 152 | 27 |
Figure S233. Get High-res Image Gene #58: 'del_13q12.13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S234. Gene #58: 'del_13q12.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 29(13Q12.13) MUTATED | 99 | 47 | 29 | 76 | 27 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 39 | 65 | 47 | 30 | 27 |
Figure S234. Get High-res Image Gene #58: 'del_13q12.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S235. Gene #58: 'del_13q12.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 29(13Q12.13) MUTATED | 60 | 26 | 28 | 58 | 14 | 39 | 23 | 1 | 29 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 23 | 31 | 16 | 26 | 32 | 12 | 26 | 17 | 25 |
Figure S235. Get High-res Image Gene #58: 'del_13q12.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S236. Gene #59: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 30(13Q14.2) MUTATED | 143 | 72 | 67 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 48 | 157 | 28 |
Figure S236. Get High-res Image Gene #59: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S237. Gene #59: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 30(13Q14.2) MUTATED | 98 | 43 | 28 | 74 | 25 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 40 | 69 | 48 | 32 | 29 |
Figure S237. Get High-res Image Gene #59: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S238. Gene #59: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 30(13Q14.2) MUTATED | 59 | 24 | 29 | 54 | 11 | 40 | 23 | 1 | 27 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 24 | 33 | 15 | 30 | 35 | 11 | 26 | 17 | 27 |
Figure S238. Get High-res Image Gene #59: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 9e-05 (Fisher's exact test), Q value = 0.057
Table S239. Gene #59: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 30(13Q14.2) MUTATED | 39 | 157 | 44 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 64 | 91 | 39 |
Figure S239. Get High-res Image Gene #59: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S240. Gene #60: 'del_13q34' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 31(13Q34) MUTATED | 117 | 62 | 62 |
| DEL PEAK 31(13Q34) WILD-TYPE | 74 | 167 | 33 |
Figure S240. Get High-res Image Gene #60: 'del_13q34' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S241. Gene #60: 'del_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 31(13Q34) MUTATED | 80 | 38 | 25 | 65 | 22 |
| DEL PEAK 31(13Q34) WILD-TYPE | 58 | 74 | 51 | 41 | 32 |
Figure S241. Get High-res Image Gene #60: 'del_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S242. Gene #60: 'del_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 31(13Q34) MUTATED | 53 | 19 | 24 | 43 | 13 | 33 | 21 | 1 | 23 |
| DEL PEAK 31(13Q34) WILD-TYPE | 30 | 38 | 20 | 41 | 33 | 18 | 28 | 17 | 31 |
Figure S242. Get High-res Image Gene #60: 'del_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S243. Gene #62: 'del_15q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 33(15Q11.2) MUTATED | 126 | 78 | 59 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 65 | 151 | 36 |
Figure S243. Get High-res Image Gene #62: 'del_15q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S244. Gene #62: 'del_15q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 33(15Q11.2) MUTATED | 96 | 43 | 15 | 68 | 26 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 42 | 69 | 61 | 38 | 28 |
Figure S244. Get High-res Image Gene #62: 'del_15q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S245. Gene #62: 'del_15q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 33(15Q11.2) MUTATED | 55 | 26 | 30 | 54 | 11 | 35 | 10 | 0 | 27 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 28 | 31 | 14 | 30 | 35 | 16 | 39 | 18 | 27 |
Figure S245. Get High-res Image Gene #62: 'del_15q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S246. Gene #62: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 33(15Q11.2) MUTATED | 71 | 134 | 56 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 118 | 94 | 37 |
Figure S246. Get High-res Image Gene #62: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S247. Gene #62: 'del_15q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 33(15Q11.2) MUTATED | 32 | 138 | 51 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 71 | 110 | 32 |
Figure S247. Get High-res Image Gene #62: 'del_15q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S248. Gene #63: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 34(16Q23.1) MUTATED | 79 | 48 | 42 |
| DEL PEAK 34(16Q23.1) WILD-TYPE | 112 | 181 | 53 |
Figure S248. Get High-res Image Gene #63: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.057
Table S249. Gene #63: 'del_16q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 34(16Q23.1) MUTATED | 17 | 47 | 50 | 32 |
| DEL PEAK 34(16Q23.1) WILD-TYPE | 79 | 78 | 58 | 84 |
Figure S249. Get High-res Image Gene #63: 'del_16q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S250. Gene #63: 'del_16q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 34(16Q23.1) MUTATED | 69 | 19 | 26 | 40 | 11 |
| DEL PEAK 34(16Q23.1) WILD-TYPE | 69 | 93 | 50 | 66 | 43 |
Figure S250. Get High-res Image Gene #63: 'del_16q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S251. Gene #63: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 34(16Q23.1) MUTATED | 42 | 10 | 24 | 35 | 9 | 17 | 17 | 0 | 11 |
| DEL PEAK 34(16Q23.1) WILD-TYPE | 41 | 47 | 20 | 49 | 37 | 34 | 32 | 18 | 43 |
Figure S251. Get High-res Image Gene #63: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S252. Gene #64: 'del_17p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 35(17P13.3) MUTATED | 149 | 78 | 51 |
| DEL PEAK 35(17P13.3) WILD-TYPE | 42 | 151 | 44 |
Figure S252. Get High-res Image Gene #64: 'del_17p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S253. Gene #64: 'del_17p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 35(17P13.3) MUTATED | 34 | 69 | 79 | 55 |
| DEL PEAK 35(17P13.3) WILD-TYPE | 62 | 56 | 29 | 61 |
Figure S253. Get High-res Image Gene #64: 'del_17p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S254. Gene #64: 'del_17p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 35(17P13.3) MUTATED | 98 | 42 | 36 | 61 | 24 |
| DEL PEAK 35(17P13.3) WILD-TYPE | 40 | 70 | 40 | 45 | 30 |
Figure S254. Get High-res Image Gene #64: 'del_17p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S255. Gene #64: 'del_17p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 35(17P13.3) MUTATED | 59 | 26 | 27 | 51 | 10 | 33 | 22 | 6 | 27 |
| DEL PEAK 35(17P13.3) WILD-TYPE | 24 | 31 | 17 | 33 | 36 | 18 | 27 | 12 | 27 |
Figure S255. Get High-res Image Gene #64: 'del_17p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S256. Gene #65: 'del_18q21.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 36(18Q21.32) MUTATED | 135 | 87 | 32 |
| DEL PEAK 36(18Q21.32) WILD-TYPE | 56 | 142 | 63 |
Figure S256. Get High-res Image Gene #65: 'del_18q21.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 0.099
Table S257. Gene #65: 'del_18q21.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 36(18Q21.32) MUTATED | 19 | 10 | 36 | 16 | 14 |
| DEL PEAK 36(18Q21.32) WILD-TYPE | 21 | 23 | 9 | 15 | 18 |
Figure S257. Get High-res Image Gene #65: 'del_18q21.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.02
Table S258. Gene #65: 'del_18q21.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 36(18Q21.32) MUTATED | 91 | 42 | 40 | 42 | 23 |
| DEL PEAK 36(18Q21.32) WILD-TYPE | 47 | 70 | 36 | 64 | 31 |
Figure S258. Get High-res Image Gene #65: 'del_18q21.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.039
Table S259. Gene #65: 'del_18q21.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 36(18Q21.32) MUTATED | 44 | 28 | 28 | 51 | 9 | 17 | 30 | 9 | 22 |
| DEL PEAK 36(18Q21.32) WILD-TYPE | 39 | 29 | 16 | 33 | 37 | 34 | 19 | 9 | 32 |
Figure S259. Get High-res Image Gene #65: 'del_18q21.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S260. Gene #66: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 37(18Q23) MUTATED | 135 | 84 | 30 |
| DEL PEAK 37(18Q23) WILD-TYPE | 56 | 145 | 65 |
Figure S260. Get High-res Image Gene #66: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.045
Table S261. Gene #66: 'del_18q23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 37(18Q23) MUTATED | 17 | 8 | 35 | 16 | 14 |
| DEL PEAK 37(18Q23) WILD-TYPE | 23 | 25 | 10 | 15 | 18 |
Figure S261. Get High-res Image Gene #66: 'del_18q23' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S262. Gene #66: 'del_18q23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 37(18Q23) MUTATED | 92 | 42 | 40 | 38 | 23 |
| DEL PEAK 37(18Q23) WILD-TYPE | 46 | 70 | 36 | 68 | 31 |
Figure S262. Get High-res Image Gene #66: 'del_18q23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.026
Table S263. Gene #66: 'del_18q23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 37(18Q23) MUTATED | 42 | 27 | 29 | 50 | 9 | 17 | 30 | 9 | 22 |
| DEL PEAK 37(18Q23) WILD-TYPE | 41 | 30 | 15 | 34 | 37 | 34 | 19 | 9 | 32 |
Figure S263. Get High-res Image Gene #66: 'del_18q23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S264. Gene #67: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 38(19P13.3) MUTATED | 118 | 87 | 70 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 73 | 142 | 25 |
Figure S264. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S265. Gene #67: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 38(19P13.3) MUTATED | 41 | 95 | 48 | 53 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 55 | 30 | 60 | 63 |
Figure S265. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S266. Gene #67: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 38(19P13.3) MUTATED | 70 | 49 | 50 | 76 | 17 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 68 | 63 | 26 | 30 | 37 |
Figure S266. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S267. Gene #67: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 38(19P13.3) MUTATED | 29 | 20 | 22 | 56 | 37 | 34 | 43 | 4 | 17 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 54 | 37 | 22 | 28 | 9 | 17 | 6 | 14 | 37 |
Figure S267. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S268. Gene #67: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 38(19P13.3) MUTATED | 78 | 151 | 41 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 111 | 77 | 52 |
Figure S268. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S269. Gene #67: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 38(19P13.3) MUTATED | 35 | 113 | 49 | 73 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 36 | 85 | 92 | 27 |
Figure S269. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00031 (Fisher's exact test), Q value = 0.18
Table S270. Gene #67: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 38(19P13.3) MUTATED | 46 | 153 | 33 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 57 | 95 | 50 |
Figure S270. Get High-res Image Gene #67: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S271. Gene #68: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 39(19P13.2) MUTATED | 117 | 84 | 67 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 74 | 145 | 28 |
Figure S271. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S272. Gene #68: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 39(19P13.2) MUTATED | 38 | 95 | 50 | 49 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 58 | 30 | 58 | 67 |
Figure S272. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S273. Gene #68: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 39(19P13.2) MUTATED | 71 | 47 | 45 | 77 | 17 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 67 | 65 | 31 | 29 | 37 |
Figure S273. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S274. Gene #68: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 39(19P13.2) MUTATED | 31 | 18 | 23 | 48 | 36 | 40 | 39 | 4 | 18 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 52 | 39 | 21 | 36 | 10 | 11 | 10 | 14 | 36 |
Figure S274. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S275. Gene #68: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 39(19P13.2) MUTATED | 76 | 148 | 39 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 113 | 80 | 54 |
Figure S275. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S276. Gene #68: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 39(19P13.2) MUTATED | 36 | 108 | 47 | 72 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 35 | 90 | 94 | 28 |
Figure S276. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.075
Table S277. Gene #68: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 39(19P13.2) MUTATED | 43 | 152 | 32 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 60 | 96 | 51 |
Figure S277. Get High-res Image Gene #68: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S278. Gene #69: 'del_19q13.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 40(19Q13.33) MUTATED | 98 | 52 | 44 |
| DEL PEAK 40(19Q13.33) WILD-TYPE | 93 | 177 | 51 |
Figure S278. Get High-res Image Gene #69: 'del_19q13.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S279. Gene #69: 'del_19q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 40(19Q13.33) MUTATED | 29 | 16 | 21 | 40 | 22 | 24 | 23 | 0 | 10 |
| DEL PEAK 40(19Q13.33) WILD-TYPE | 54 | 41 | 23 | 44 | 24 | 27 | 26 | 18 | 44 |
Figure S279. Get High-res Image Gene #69: 'del_19q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S280. Gene #69: 'del_19q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 40(19Q13.33) MUTATED | 47 | 108 | 35 |
| DEL PEAK 40(19Q13.33) WILD-TYPE | 142 | 120 | 58 |
Figure S280. Get High-res Image Gene #69: 'del_19q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S281. Gene #69: 'del_19q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 40(19Q13.33) MUTATED | 23 | 87 | 28 | 52 |
| DEL PEAK 40(19Q13.33) WILD-TYPE | 48 | 111 | 113 | 48 |
Figure S281. Get High-res Image Gene #69: 'del_19q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S282. Gene #70: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 41(20P13) MUTATED | 73 | 38 | 19 |
| DEL PEAK 41(20P13) WILD-TYPE | 118 | 191 | 76 |
Figure S282. Get High-res Image Gene #70: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S283. Gene #70: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 41(20P13) MUTATED | 56 | 23 | 21 | 14 | 12 |
| DEL PEAK 41(20P13) WILD-TYPE | 82 | 89 | 55 | 92 | 42 |
Figure S283. Get High-res Image Gene #70: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S284. Gene #70: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 41(20P13) MUTATED | 32 | 16 | 20 | 15 | 0 | 10 | 16 | 3 | 14 |
| DEL PEAK 41(20P13) WILD-TYPE | 51 | 41 | 24 | 69 | 46 | 41 | 33 | 15 | 40 |
Figure S284. Get High-res Image Gene #70: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S285. Gene #72: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 43(21Q11.2) MUTATED | 57 | 64 | 55 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 134 | 165 | 40 |
Figure S285. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00022 (Fisher's exact test), Q value = 0.13
Table S286. Gene #72: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 43(21Q11.2) MUTATED | 16 | 55 | 38 | 37 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 80 | 70 | 70 | 79 |
Figure S286. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S287. Gene #72: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 43(21Q11.2) MUTATED | 49 | 13 | 30 | 59 | 12 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 89 | 99 | 46 | 47 | 42 |
Figure S287. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S288. Gene #72: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 43(21Q11.2) MUTATED | 18 | 9 | 18 | 33 | 10 | 34 | 24 | 3 | 14 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 65 | 48 | 26 | 51 | 36 | 17 | 25 | 15 | 40 |
Figure S288. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S289. Gene #72: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 43(21Q11.2) MUTATED | 41 | 108 | 24 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 148 | 120 | 69 |
Figure S289. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.014
Table S290. Gene #72: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 43(21Q11.2) MUTATED | 16 | 73 | 32 | 52 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 55 | 125 | 109 | 48 |
Figure S290. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S291. Gene #72: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 43(21Q11.2) MUTATED | 18 | 106 | 23 |
| DEL PEAK 43(21Q11.2) WILD-TYPE | 85 | 142 | 60 |
Figure S291. Get High-res Image Gene #72: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S292. Gene #73: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 44(22Q13.32) MUTATED | 116 | 65 | 69 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 75 | 164 | 26 |
Figure S292. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S293. Gene #73: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 96 | 125 | 108 | 116 |
| DEL PEAK 44(22Q13.32) MUTATED | 25 | 75 | 67 | 49 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 71 | 50 | 41 | 67 |
Figure S293. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S294. Gene #73: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 44(22Q13.32) MUTATED | 80 | 33 | 36 | 74 | 12 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 58 | 79 | 40 | 32 | 42 |
Figure S294. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S295. Gene #73: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 44(22Q13.32) MUTATED | 52 | 14 | 24 | 47 | 14 | 39 | 28 | 4 | 13 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 31 | 43 | 20 | 37 | 32 | 12 | 21 | 14 | 41 |
Figure S295. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S296. Gene #73: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 44(22Q13.32) MUTATED | 65 | 138 | 44 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 124 | 90 | 49 |
Figure S296. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S297. Gene #73: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 44(22Q13.32) MUTATED | 24 | 116 | 46 | 61 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 47 | 82 | 95 | 39 |
Figure S297. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S298. Gene #73: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 44(22Q13.32) MUTATED | 32 | 144 | 34 |
| DEL PEAK 44(22Q13.32) WILD-TYPE | 71 | 104 | 49 |
Figure S298. Get High-res Image Gene #73: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.0089
Table S299. Gene #74: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 191 | 229 | 95 |
| DEL PEAK 45(XP22.2) MUTATED | 82 | 37 | 25 |
| DEL PEAK 45(XP22.2) WILD-TYPE | 109 | 192 | 70 |
Figure S299. Get High-res Image Gene #74: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.1
Table S300. Gene #74: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 138 | 112 | 76 | 106 | 54 |
| DEL PEAK 45(XP22.2) MUTATED | 59 | 28 | 13 | 25 | 10 |
| DEL PEAK 45(XP22.2) WILD-TYPE | 79 | 84 | 63 | 81 | 44 |
Figure S300. Get High-res Image Gene #74: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3e-04 (Fisher's exact test), Q value = 0.18
Table S301. Gene #74: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
|---|---|---|---|---|---|---|---|---|---|
| ALL | 83 | 57 | 44 | 84 | 46 | 51 | 49 | 18 | 54 |
| DEL PEAK 45(XP22.2) MUTATED | 36 | 16 | 18 | 27 | 8 | 8 | 8 | 1 | 13 |
| DEL PEAK 45(XP22.2) WILD-TYPE | 47 | 41 | 26 | 57 | 38 | 43 | 41 | 17 | 41 |
Figure S301. Get High-res Image Gene #74: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = LUAD-TP.transferedmergedcluster.txt
-
Number of patients = 515
-
Number of significantly focal cnvs = 74
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.