Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
17 October 2014  |  analyses__2014_10_17
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C17080BR
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 148 genes and 10 molecular subtypes across 41 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 148 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features
CN
CNMF
METHLYATION
CNMF
RPPA
CNMF
RPPA
CHIERARCHICAL
MRNASEQ
CNMF
MRNASEQ
CHIERARCHICAL
MIRSEQ
CNMF
MIRSEQ
CHIERARCHICAL
MIRSEQ
MATURE
CNMF
MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
KRAS 30 (73%) 11 0.0753
(1.00)
0.723
(1.00)
0.394
(1.00)
0.54
(1.00)
0.562
(1.00)
1
(1.00)
0.903
(1.00)
0.218
(1.00)
0.3
(1.00)
0.464
(1.00)
TP53 24 (59%) 17 0.00223
(1.00)
0.309
(1.00)
0.0584
(1.00)
0.0882
(1.00)
0.653
(1.00)
1
(1.00)
1
(1.00)
0.883
(1.00)
0.792
(1.00)
0.793
(1.00)
C19ORF55 7 (17%) 34 0.819
(1.00)
0.317
(1.00)
0.157
(1.00)
0.623
(1.00)
0.835
(1.00)
0.847
(1.00)
0.627
(1.00)
0.389
(1.00)
1
(1.00)
1
(1.00)
B4GALT2 5 (12%) 36 0.434
(1.00)
1
(1.00)
0.859
(1.00)
1
(1.00)
0.551
(1.00)
0.676
(1.00)
0.823
(1.00)
1
(1.00)
0.814
(1.00)
0.529
(1.00)
CDKN2A 7 (17%) 34 0.00682
(1.00)
0.0627
(1.00)
0.637
(1.00)
0.117
(1.00)
0.618
(1.00)
0.702
(1.00)
0.378
(1.00)
0.313
(1.00)
0.0411
(1.00)
0.571
(1.00)
NFIL3 6 (15%) 35 0.797
(1.00)
0.447
(1.00)
0.343
(1.00)
0.206
(1.00)
1
(1.00)
0.409
(1.00)
0.624
(1.00)
0.248
(1.00)
0.699
(1.00)
0.398
(1.00)
OTOF 9 (22%) 32 0.0771
(1.00)
0.421
(1.00)
0.343
(1.00)
0.391
(1.00)
0.866
(1.00)
1
(1.00)
0.638
(1.00)
1
(1.00)
0.637
(1.00)
0.861
(1.00)
IRS1 6 (15%) 35 1
(1.00)
0.539
(1.00)
0.735
(1.00)
0.229
(1.00)
0.155
(1.00)
0.267
(1.00)
0.141
(1.00)
0.134
(1.00)
0.23
(1.00)
0.249
(1.00)
GAS2L2 6 (15%) 35 1
(1.00)
0.842
(1.00)
0.513
(1.00)
0.904
(1.00)
1
(1.00)
1
(1.00)
0.875
(1.00)
1
(1.00)
1
(1.00)
0.615
(1.00)
RBM10 6 (15%) 35 0.387
(1.00)
0.122
(1.00)
0.2
(1.00)
0.694
(1.00)
0.3
(1.00)
0.261
(1.00)
0.161
(1.00)
0.164
(1.00)
0.815
(1.00)
0.0434
(1.00)
APP 6 (15%) 35 0.29
(1.00)
0.739
(1.00)
1
(1.00)
0.59
(1.00)
0.83
(1.00)
0.542
(1.00)
0.468
(1.00)
0.459
(1.00)
1
(1.00)
1
(1.00)
IPP 5 (12%) 36 0.569
(1.00)
0.398
(1.00)
0.508
(1.00)
0.0974
(1.00)
0.224
(1.00)
0.156
(1.00)
0.195
(1.00)
0.0793
(1.00)
1
(1.00)
0.0777
(1.00)
MAMLD1 7 (17%) 34 1
(1.00)
1
(1.00)
0.94
(1.00)
0.907
(1.00)
0.626
(1.00)
0.544
(1.00)
0.938
(1.00)
0.554
(1.00)
0.849
(1.00)
1
(1.00)
ARHGAP18 4 (10%) 37 1
(1.00)
0.173
(1.00)
1
(1.00)
0.352
(1.00)
0.681
(1.00)
0.417
(1.00)
1
(1.00)
0.345
(1.00)
PHF8 5 (12%) 36 0.161
(1.00)
0.193
(1.00)
0.634
(1.00)
0.467
(1.00)
0.151
(1.00)
0.0994
(1.00)
0.0641
(1.00)
0.575
(1.00)
0.33
(1.00)
0.554
(1.00)
THBS4 6 (15%) 35 0.214
(1.00)
1
(1.00)
0.733
(1.00)
1
(1.00)
0.349
(1.00)
1
(1.00)
0.853
(1.00)
1
(1.00)
0.698
(1.00)
1
(1.00)
SMAD4 7 (17%) 34 0.82
(1.00)
0.49
(1.00)
0.233
(1.00)
0.355
(1.00)
0.274
(1.00)
0.489
(1.00)
0.3
(1.00)
0.668
(1.00)
0.138
(1.00)
0.571
(1.00)
PTPRF 7 (17%) 34 0.554
(1.00)
0.488
(1.00)
0.889
(1.00)
0.951
(1.00)
0.55
(1.00)
0.732
(1.00)
0.214
(1.00)
0.843
(1.00)
0.853
(1.00)
0.164
(1.00)
MED12 6 (15%) 35 0.0364
(1.00)
0.182
(1.00)
0.242
(1.00)
0.929
(1.00)
0.349
(1.00)
0.41
(1.00)
0.206
(1.00)
0.387
(1.00)
0.842
(1.00)
0.834
(1.00)
BMP2K 4 (10%) 37 0.718
(1.00)
0.805
(1.00)
0.141
(1.00)
0.876
(1.00)
0.5
(1.00)
0.637
(1.00)
0.204
(1.00)
0.577
(1.00)
1
(1.00)
0.614
(1.00)
ZMYM5 4 (10%) 37 1
(1.00)
0.66
(1.00)
0.609
(1.00)
0.763
(1.00)
0.643
(1.00)
1
(1.00)
1
(1.00)
0.575
(1.00)
0.772
(1.00)
0.612
(1.00)
SYT15 4 (10%) 37 0.102
(1.00)
0.391
(1.00)
0.428
(1.00)
0.648
(1.00)
0.813
(1.00)
1
(1.00)
0.684
(1.00)
1
(1.00)
0.771
(1.00)
0.801
(1.00)
PLAU 4 (10%) 37 0.163
(1.00)
0.519
(1.00)
1
(1.00)
0.899
(1.00)
0.497
(1.00)
0.633
(1.00)
0.204
(1.00)
0.734
(1.00)
0.317
(1.00)
0.118
(1.00)
MEPCE 4 (10%) 37 0.353
(1.00)
0.659
(1.00)
0.428
(1.00)
0.648
(1.00)
0.645
(1.00)
0.488
(1.00)
1
(1.00)
0.574
(1.00)
0.333
(1.00)
1
(1.00)
ZMIZ1 5 (12%) 36 0.569
(1.00)
1
(1.00)
0.656
(1.00)
0.493
(1.00)
0.83
(1.00)
0.827
(1.00)
0.754
(1.00)
1
(1.00)
1
(1.00)
0.827
(1.00)
SLC39A5 4 (10%) 37 0.104
(1.00)
0.229
(1.00)
1
(1.00)
0.794
(1.00)
0.125
(1.00)
0.734
(1.00)
0.44
(1.00)
0.8
(1.00)
GUCY2F 5 (12%) 36 0.0757
(1.00)
0.397
(1.00)
0.386
(1.00)
0.823
(1.00)
1
(1.00)
1
(1.00)
0.195
(1.00)
1
(1.00)
0.515
(1.00)
0.829
(1.00)
EDC4 5 (12%) 36 0.434
(1.00)
0.473
(1.00)
0.862
(1.00)
0.825
(1.00)
0.813
(1.00)
1
(1.00)
0.877
(1.00)
1
(1.00)
0.594
(1.00)
0.612
(1.00)
SEH1L 3 (7%) 38 0.107
(1.00)
0.775
(1.00)
0.0718
(1.00)
0.755
(1.00)
0.504
(1.00)
1
(1.00)
0.713
(1.00)
0.406
(1.00)
SLC4A3 3 (7%) 38 0.666
(1.00)
0.425
(1.00)
1
(1.00)
0.898
(1.00)
0.567
(1.00)
0.111
(1.00)
0.702
(1.00)
1
(1.00)
1
(1.00)
0.0431
(1.00)
CD99L2 4 (10%) 37 1
(1.00)
0.521
(1.00)
0.498
(1.00)
0.634
(1.00)
0.205
(1.00)
0.736
(1.00)
0.769
(1.00)
0.348
(1.00)
SBNO1 4 (10%) 37 0.495
(1.00)
0.12
(1.00)
0.812
(1.00)
0.7
(1.00)
0.646
(1.00)
1
(1.00)
0.532
(1.00)
0.576
(1.00)
0.208
(1.00)
1
(1.00)
NPNT 3 (7%) 38 0.4
(1.00)
0.0343
(1.00)
0.899
(1.00)
0.255
(1.00)
0.391
(1.00)
0.528
(1.00)
0.256
(1.00)
0.432
(1.00)
1
(1.00)
0.258
(1.00)
TMEM175 5 (12%) 36 0.432
(1.00)
0.838
(1.00)
0.103
(1.00)
0.207
(1.00)
0.552
(1.00)
0.681
(1.00)
0.626
(1.00)
1
(1.00)
0.0636
(1.00)
0.401
(1.00)
IRX4 4 (10%) 37 0.719
(1.00)
0.23
(1.00)
0.112
(1.00)
0.185
(1.00)
0.274
(1.00)
0.0931
(1.00)
0.713
(1.00)
0.0743
(1.00)
CLCC1 3 (7%) 38 0.397
(1.00)
0.19
(1.00)
0.761
(1.00)
0.526
(1.00)
0.207
(1.00)
0.276
(1.00)
0.715
(1.00)
0.0735
(1.00)
BTNL8 4 (10%) 37 1
(1.00)
0.391
(1.00)
0.764
(1.00)
0.701
(1.00)
0.0735
(1.00)
0.0494
(1.00)
0.0346
(1.00)
0.416
(1.00)
0.592
(1.00)
0.17
(1.00)
SYNGAP1 5 (12%) 36 0.104
(1.00)
1
(1.00)
0.61
(1.00)
0.763
(1.00)
0.549
(1.00)
0.827
(1.00)
0.754
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
F8 4 (10%) 37 0.492
(1.00)
0.12
(1.00)
0.385
(1.00)
0.504
(1.00)
0.813
(1.00)
1
(1.00)
0.681
(1.00)
1
(1.00)
0.208
(1.00)
0.614
(1.00)
SORBS2 6 (15%) 35 0.0365
(1.00)
0.184
(1.00)
0.653
(1.00)
0.489
(1.00)
0.829
(1.00)
0.547
(1.00)
0.468
(1.00)
0.457
(1.00)
1
(1.00)
1
(1.00)
NR4A3 4 (10%) 37 0.352
(1.00)
0.66
(1.00)
0.428
(1.00)
0.646
(1.00)
0.643
(1.00)
0.489
(1.00)
1
(1.00)
0.577
(1.00)
0.77
(1.00)
1
(1.00)
ZNF337 4 (10%) 37 0.493
(1.00)
0.394
(1.00)
0.764
(1.00)
0.701
(1.00)
0.363
(1.00)
0.0471
(1.00)
0.434
(1.00)
0.416
(1.00)
0.596
(1.00)
0.0122
(1.00)
TAOK2 4 (10%) 37 0.163
(1.00)
0.231
(1.00)
0.19
(1.00)
0.706
(1.00)
0.0053
(1.00)
0.00295
(1.00)
0.022
(1.00)
0.092
(1.00)
0.321
(1.00)
0.12
(1.00)
UNC5A 4 (10%) 37 0.715
(1.00)
0.804
(1.00)
0.545
(1.00)
1
(1.00)
0.76
(1.00)
0.261
(1.00)
0.433
(1.00)
0.433
(1.00)
1
(1.00)
0.719
(1.00)
TNFSF9 4 (10%) 37 0.718
(1.00)
1
(1.00)
1
(1.00)
0.9
(1.00)
0.815
(1.00)
1
(1.00)
0.876
(1.00)
1
(1.00)
1
(1.00)
0.802
(1.00)
TEX2 4 (10%) 37 0.162
(1.00)
0.523
(1.00)
0.612
(1.00)
0.763
(1.00)
0.212
(1.00)
0.139
(1.00)
0.436
(1.00)
0.736
(1.00)
1
(1.00)
0.345
(1.00)
RBM43 3 (7%) 38 0.663
(1.00)
0.427
(1.00)
CIR1 3 (7%) 38 0.109
(1.00)
1
(1.00)
0.0706
(1.00)
0.754
(1.00)
0.506
(1.00)
1
(1.00)
0.487
(1.00)
0.404
(1.00)
TOX4 4 (10%) 37 0.355
(1.00)
0.657
(1.00)
0.735
(1.00)
0.704
(1.00)
0.495
(1.00)
0.634
(1.00)
0.438
(1.00)
0.733
(1.00)
0.595
(1.00)
0.346
(1.00)
HIBCH 3 (7%) 38 0.108
(1.00)
0.189
(1.00)
0.288
(1.00)
1
(1.00)
0.76
(1.00)
0.525
(1.00)
0.308
(1.00)
0.279
(1.00)
0.0861
(1.00)
0.718
(1.00)
CRAT 3 (7%) 38 0.395
(1.00)
0.19
(1.00)
0.00352
(1.00)
0.0248
(1.00)
0.00999
(1.00)
0.278
(1.00)
0.0871
(1.00)
0.719
(1.00)
SRP14 3 (7%) 38 0.109
(1.00)
0.573
(1.00)
0.567
(1.00)
1
(1.00)
0.31
(1.00)
1
(1.00)
0.144
(1.00)
1
(1.00)
PDZD7 4 (10%) 37 0.719
(1.00)
1
(1.00)
0.809
(1.00)
0.545
(1.00)
1
(1.00)
1
(1.00)
0.877
(1.00)
1
(1.00)
1
(1.00)
0.407
(1.00)
POP5 3 (7%) 38 0.275
(1.00)
0.421
(1.00)
1
(1.00)
0.9
(1.00)
0.76
(1.00)
0.756
(1.00)
0.701
(1.00)
1
(1.00)
0.485
(1.00)
1
(1.00)
UNC5D 3 (7%) 38 1
(1.00)
0.425
(1.00)
1
(1.00)
0.898
(1.00)
0.76
(1.00)
0.755
(1.00)
0.703
(1.00)
1
(1.00)
1
(1.00)
0.405
(1.00)
FAM47C 5 (12%) 36 1
(1.00)
1
(1.00)
0.939
(1.00)
0.303
(1.00)
0.377
(1.00)
1
(1.00)
0.625
(1.00)
0.258
(1.00)
1
(1.00)
0.673
(1.00)
TMEM184A 4 (10%) 37 0.715
(1.00)
0.525
(1.00)
0.463
(1.00)
0.0884
(1.00)
0.0447
(1.00)
0.0263
(1.00)
0.205
(1.00)
0.0359
(1.00)
1
(1.00)
0.0228
(1.00)
BEGAIN 4 (10%) 37 0.164
(1.00)
0.232
(1.00)
1
(1.00)
0.795
(1.00)
0.125
(1.00)
0.277
(1.00)
0.318
(1.00)
0.799
(1.00)
PASD1 5 (12%) 36 0.318
(1.00)
0.57
(1.00)
0.412
(1.00)
0.303
(1.00)
0.55
(1.00)
0.681
(1.00)
0.627
(1.00)
0.611
(1.00)
1
(1.00)
0.675
(1.00)
RBM45 4 (10%) 37 0.164
(1.00)
1
(1.00)
0.736
(1.00)
0.227
(1.00)
0.498
(1.00)
0.638
(1.00)
0.876
(1.00)
0.734
(1.00)
1
(1.00)
0.119
(1.00)
POM121 4 (10%) 37 0.719
(1.00)
0.805
(1.00)
1
(1.00)
0.63
(1.00)
1
(1.00)
0.637
(1.00)
0.602
(1.00)
0.277
(1.00)
0.771
(1.00)
0.346
(1.00)
EME2 3 (7%) 38 0.395
(1.00)
0.573
(1.00)
0.262
(1.00)
1
(1.00)
0.76
(1.00)
0.525
(1.00)
0.206
(1.00)
0.692
(1.00)
1
(1.00)
1
(1.00)
CUL4B 3 (7%) 38 0.399
(1.00)
0.775
(1.00)
0.0332
(1.00)
0.264
(1.00)
0.0936
(1.00)
0.28
(1.00)
0.713
(1.00)
0.118
(1.00)
DIAPH3 4 (10%) 37 1
(1.00)
0.657
(1.00)
1
(1.00)
0.795
(1.00)
0.48
(1.00)
0.575
(1.00)
1
(1.00)
1
(1.00)
IFT46 4 (10%) 37 0.163
(1.00)
1
(1.00)
0.068
(1.00)
0.3
(1.00)
0.76
(1.00)
0.526
(1.00)
0.43
(1.00)
0.692
(1.00)
1
(1.00)
1
(1.00)
OTUD4 5 (12%) 36 0.32
(1.00)
0.685
(1.00)
0.888
(1.00)
0.565
(1.00)
0.685
(1.00)
0.829
(1.00)
0.754
(1.00)
0.35
(1.00)
0.513
(1.00)
0.528
(1.00)
GABBR1 4 (10%) 37 0.105
(1.00)
0.393
(1.00)
0.605
(1.00)
0.421
(1.00)
1
(1.00)
1
(1.00)
0.681
(1.00)
1
(1.00)
0.771
(1.00)
0.613
(1.00)
MYH10 4 (10%) 37 0.163
(1.00)
0.522
(1.00)
0.812
(1.00)
1
(1.00)
0.495
(1.00)
0.139
(1.00)
0.877
(1.00)
0.736
(1.00)
1
(1.00)
0.118
(1.00)
ERF 4 (10%) 37 0.716
(1.00)
0.171
(1.00)
1
(1.00)
1
(1.00)
0.497
(1.00)
0.35
(1.00)
0.437
(1.00)
0.416
(1.00)
1
(1.00)
0.347
(1.00)
OR10A7 4 (10%) 37 0.718
(1.00)
1
(1.00)
0.762
(1.00)
0.494
(1.00)
1
(1.00)
0.755
(1.00)
0.824
(1.00)
1
(1.00)
0.334
(1.00)
1
(1.00)
BRDT 4 (10%) 37 0.163
(1.00)
1
(1.00)
0.499
(1.00)
0.635
(1.00)
0.435
(1.00)
0.734
(1.00)
1
(1.00)
0.121
(1.00)
CDHR5 4 (10%) 37 1
(1.00)
1
(1.00)
0.243
(1.00)
0.319
(1.00)
0.0449
(1.00)
0.139
(1.00)
0.436
(1.00)
0.734
(1.00)
0.0143
(1.00)
0.801
(1.00)
EPS8L3 3 (7%) 38 0.399
(1.00)
0.577
(1.00)
0.609
(1.00)
0.762
(1.00)
GPR25 3 (7%) 38 0.664
(1.00)
0.428
(1.00)
0.568
(1.00)
0.112
(1.00)
0.7
(1.00)
1
(1.00)
0.334
(1.00)
0.0412
(1.00)
PPARGC1B 3 (7%) 38 0.109
(1.00)
0.775
(1.00)
0.176
(1.00)
0.262
(1.00)
0.0946
(1.00)
0.28
(1.00)
0.713
(1.00)
0.115
(1.00)
FGF10 3 (7%) 38 0.172
(1.00)
0.288
(1.00)
1
(1.00)
1
(1.00)
0.822
(1.00)
0.692
(1.00)
SALL1 5 (12%) 36 1
(1.00)
1
(1.00)
0.304
(1.00)
0.341
(1.00)
1
(1.00)
1
(1.00)
0.877
(1.00)
1
(1.00)
0.772
(1.00)
0.614
(1.00)
VEPH1 4 (10%) 37 1
(1.00)
0.66
(1.00)
0.387
(1.00)
0.6
(1.00)
0.813
(1.00)
0.352
(1.00)
0.873
(1.00)
1
(1.00)
0.152
(1.00)
0.174
(1.00)
ATRX 3 (7%) 38 0.396
(1.00)
0.423
(1.00)
0.569
(1.00)
0.755
(1.00)
0.699
(1.00)
1
(1.00)
1
(1.00)
0.718
(1.00)
ST6GALNAC5 4 (10%) 37 0.162
(1.00)
0.806
(1.00)
0.305
(1.00)
0.338
(1.00)
0.645
(1.00)
0.488
(1.00)
0.76
(1.00)
0.574
(1.00)
1
(1.00)
1
(1.00)
DHX57 3 (7%) 38 1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.691
(1.00)
GNL3L 3 (7%) 38 0.398
(1.00)
1
(1.00)
0.507
(1.00)
0.202
(1.00)
0.271
(1.00)
0.263
(1.00)
0.592
(1.00)
0.695
(1.00)
1
(1.00)
0.556
(1.00)
MST1 5 (12%) 36 1
(1.00)
1
(1.00)
0.424
(1.00)
0.647
(1.00)
0.551
(1.00)
0.261
(1.00)
0.624
(1.00)
0.614
(1.00)
0.515
(1.00)
0.397
(1.00)
GRB7 4 (10%) 37 0.247
(1.00)
0.12
(1.00)
0.0546
(1.00)
0.156
(1.00)
0.815
(1.00)
1
(1.00)
0.685
(1.00)
1
(1.00)
0.152
(1.00)
0.615
(1.00)
TMC4 5 (12%) 36 0.566
(1.00)
1
(1.00)
0.242
(1.00)
0.928
(1.00)
1
(1.00)
1
(1.00)
0.236
(1.00)
1
(1.00)
0.321
(1.00)
0.613
(1.00)
MED9 3 (7%) 38 1
(1.00)
1
(1.00)
0.76
(1.00)
0.528
(1.00)
0.428
(1.00)
0.434
(1.00)
1
(1.00)
0.72
(1.00)
WASF3 3 (7%) 38 0.665
(1.00)
1
(1.00)
0.759
(1.00)
0.528
(1.00)
0.429
(1.00)
0.43
(1.00)
0.482
(1.00)
0.255
(1.00)
GIT1 3 (7%) 38 1
(1.00)
0.425
(1.00)
1
(1.00)
0.898
(1.00)
0.758
(1.00)
0.756
(1.00)
0.699
(1.00)
1
(1.00)
1
(1.00)
0.403
(1.00)
SV2A 3 (7%) 38 0.665
(1.00)
0.428
(1.00)
1
(1.00)
0.757
(1.00)
0.825
(1.00)
1
(1.00)
UGP2 4 (10%) 37 0.719
(1.00)
0.803
(1.00)
0.178
(1.00)
0.526
(1.00)
0.208
(1.00)
0.433
(1.00)
0.716
(1.00)
0.72
(1.00)
ERCC3 3 (7%) 38 0.397
(1.00)
0.126
(1.00)
0.177
(1.00)
0.111
(1.00)
0.095
(1.00)
0.161
(1.00)
0.715
(1.00)
0.116
(1.00)
ARMCX3 3 (7%) 38 0.106
(1.00)
1
(1.00)
1
(1.00)
0.899
(1.00)
0.39
(1.00)
0.347
(1.00)
0.127
(1.00)
0.436
(1.00)
1
(1.00)
0.258
(1.00)
TMCO1 3 (7%) 38 1
(1.00)
0.287
(1.00)
0.42
(1.00)
0.647
(1.00)
0.566
(1.00)
0.754
(1.00)
0.699
(1.00)
0.69
(1.00)
0.334
(1.00)
0.409
(1.00)
HMX2 3 (7%) 38 0.396
(1.00)
0.775
(1.00)
0.0334
(1.00)
0.263
(1.00)
0.0935
(1.00)
0.278
(1.00)
0.716
(1.00)
0.117
(1.00)
AARS2 4 (10%) 37 0.718
(1.00)
1
(1.00)
0.609
(1.00)
0.763
(1.00)
0.213
(1.00)
0.138
(1.00)
0.431
(1.00)
0.733
(1.00)
1
(1.00)
0.0381
(1.00)
ALS2CR11 3 (7%) 38 1
(1.00)
0.774
(1.00)
1
(1.00)
0.898
(1.00)
0.567
(1.00)
0.753
(1.00)
0.502
(1.00)
1
(1.00)
1
(1.00)
0.406
(1.00)
ARFGAP3 3 (7%) 38 1
(1.00)
0.776
(1.00)
0.567
(1.00)
0.757
(1.00)
1
(1.00)
1
(1.00)
0.143
(1.00)
0.257
(1.00)
SMG7 3 (7%) 38 1
(1.00)
0.286
(1.00)
0.425
(1.00)
0.649
(1.00)
0.57
(1.00)
0.755
(1.00)
0.706
(1.00)
0.69
(1.00)
0.333
(1.00)
0.404
(1.00)
CHGA 3 (7%) 38 0.271
(1.00)
0.125
(1.00)
0.0695
(1.00)
0.111
(1.00)
0.0938
(1.00)
0.162
(1.00)
1
(1.00)
0.0412
(1.00)
FAM63B 3 (7%) 38 0.107
(1.00)
1
(1.00)
0.177
(1.00)
0.263
(1.00)
0.0946
(1.00)
0.278
(1.00)
0.484
(1.00)
0.117
(1.00)
VPS36 3 (7%) 38 1
(1.00)
1
(1.00)
0.568
(1.00)
1
(1.00)
1
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
MAP3K7 3 (7%) 38 0.398
(1.00)
0.776
(1.00)
0.812
(1.00)
1
(1.00)
0.0327
(1.00)
0.264
(1.00)
0.504
(1.00)
0.28
(1.00)
0.713
(1.00)
0.116
(1.00)
OTX1 4 (10%) 37 1
(1.00)
0.121
(1.00)
0.544
(1.00)
0.181
(1.00)
0.815
(1.00)
1
(1.00)
0.682
(1.00)
1
(1.00)
0.153
(1.00)
0.614
(1.00)
THBS1 3 (7%) 38 1
(1.00)
1
(1.00)
0.76
(1.00)
0.527
(1.00)
0.43
(1.00)
0.434
(1.00)
INTS7 3 (7%) 38 1
(1.00)
0.425
(1.00)
0.567
(1.00)
0.757
(1.00)
0.701
(1.00)
1
(1.00)
1
(1.00)
0.718
(1.00)
ZNF644 3 (7%) 38 1
(1.00)
1
(1.00)
0.76
(1.00)
0.525
(1.00)
0.429
(1.00)
0.433
(1.00)
1
(1.00)
0.717
(1.00)
NFAT5 3 (7%) 38 0.397
(1.00)
0.575
(1.00)
0.607
(1.00)
0.765
(1.00)
1
(1.00)
0.754
(1.00)
1
(1.00)
0.69
(1.00)
0.331
(1.00)
1
(1.00)
WHSC1L1 3 (7%) 38 0.663
(1.00)
0.124
(1.00)
0.758
(1.00)
0.757
(1.00)
0.703
(1.00)
0.161
(1.00)
0.714
(1.00)
0.403
(1.00)
KIAA1211 3 (7%) 38 0.399
(1.00)
0.575
(1.00)
0.762
(1.00)
0.527
(1.00)
0.205
(1.00)
0.436
(1.00)
0.714
(1.00)
0.72
(1.00)
NAGPA 3 (7%) 38 0.663
(1.00)
0.288
(1.00)
1
(1.00)
1
(1.00)
0.823
(1.00)
0.692
(1.00)
0.332
(1.00)
1
(1.00)
PPIG 3 (7%) 38 0.396
(1.00)
0.125
(1.00)
SLITRK5 4 (10%) 37 0.717
(1.00)
0.808
(1.00)
0.814
(1.00)
1
(1.00)
1
(1.00)
0.576
(1.00)
1
(1.00)
1
(1.00)
MBD3 3 (7%) 38 0.398
(1.00)
0.777
(1.00)
0.176
(1.00)
0.263
(1.00)
0.095
(1.00)
1
(1.00)
0.714
(1.00)
0.717
(1.00)
FOXP2 5 (12%) 36 1
(1.00)
0.835
(1.00)
0.541
(1.00)
0.305
(1.00)
0.363
(1.00)
0.354
(1.00)
0.204
(1.00)
1
(1.00)
0.772
(1.00)
0.347
(1.00)
NAPSA 3 (7%) 38 0.398
(1.00)
0.776
(1.00)
0.811
(1.00)
0.546
(1.00)
EIF3C 3 (7%) 38 0.398
(1.00)
1
(1.00)
0.811
(1.00)
0.545
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
GTF2F1 3 (7%) 38 0.395
(1.00)
0.574
(1.00)
1
(1.00)
0.898
(1.00)
0.762
(1.00)
0.263
(1.00)
0.43
(1.00)
0.434
(1.00)
1
(1.00)
0.718
(1.00)
CCKAR 3 (7%) 38 0.396
(1.00)
0.773
(1.00)
MMP14 3 (7%) 38 1
(1.00)
1
(1.00)
0.179
(1.00)
0.262
(1.00)
0.0929
(1.00)
0.279
(1.00)
1
(1.00)
0.117
(1.00)
ATM 3 (7%) 38 0.109
(1.00)
0.423
(1.00)
0.0226
(1.00)
0.0442
(1.00)
CCDC28B 3 (7%) 38 0.0482
(1.00)
0.285
(1.00)
0.0236
(1.00)
0.0447
(1.00)
0.567
(1.00)
0.754
(1.00)
0.702
(1.00)
1
(1.00)
0.23
(1.00)
0.405
(1.00)
IFFO1 3 (7%) 38 0.272
(1.00)
0.284
(1.00)
0.423
(1.00)
0.647
(1.00)
1
(1.00)
0.756
(1.00)
0.825
(1.00)
0.69
(1.00)
0.332
(1.00)
0.405
(1.00)
TWISTNB 3 (7%) 38 0.395
(1.00)
0.574
(1.00)
1
(1.00)
0.753
(1.00)
1
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
RASGRF2 3 (7%) 38 1
(1.00)
0.426
(1.00)
1
(1.00)
0.9
(1.00)
0.569
(1.00)
0.758
(1.00)
0.705
(1.00)
1
(1.00)
1
(1.00)
0.405
(1.00)
SPAG9 3 (7%) 38 1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.691
(1.00)
1
(1.00)
1
(1.00)
SMCR7 3 (7%) 38 1
(1.00)
1
(1.00)
0.424
(1.00)
0.645
(1.00)
0.567
(1.00)
0.754
(1.00)
0.506
(1.00)
1
(1.00)
0.484
(1.00)
0.408
(1.00)
PSAT1 4 (10%) 37 0.496
(1.00)
0.393
(1.00)
0.144
(1.00)
0.351
(1.00)
1
(1.00)
1
(1.00)
0.823
(1.00)
1
(1.00)
PDILT 3 (7%) 38 1
(1.00)
1
(1.00)
1
(1.00)
0.898
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
CCDC8 3 (7%) 38 0.398
(1.00)
0.575
(1.00)
0.811
(1.00)
0.548
(1.00)
1
(1.00)
1
(1.00)
0.306
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
HIST1H2BK 3 (7%) 38 1
(1.00)
1
(1.00)
0.761
(1.00)
0.526
(1.00)
0.426
(1.00)
0.28
(1.00)
0.486
(1.00)
0.716
(1.00)
METAP1 3 (7%) 38 0.394
(1.00)
1
(1.00)
0.811
(1.00)
1
(1.00)
0.758
(1.00)
0.527
(1.00)
1
(1.00)
0.436
(1.00)
1
(1.00)
0.719
(1.00)
SCRIB 3 (7%) 38 1
(1.00)
1
(1.00)
0.176
(1.00)
0.263
(1.00)
0.0945
(1.00)
0.277
(1.00)
0.485
(1.00)
0.118
(1.00)
STAU1 3 (7%) 38 1
(1.00)
1
(1.00)
0.188
(1.00)
0.704
(1.00)
0.177
(1.00)
0.263
(1.00)
0.0936
(1.00)
0.688
(1.00)
0.485
(1.00)
1
(1.00)
GOLGA6B 3 (7%) 38 0.272
(1.00)
0.288
(1.00)
0.0238
(1.00)
0.0451
(1.00)
0.568
(1.00)
0.754
(1.00)
0.7
(1.00)
1
(1.00)
0.332
(1.00)
0.404
(1.00)
IRS4 4 (10%) 37 1
(1.00)
0.661
(1.00)
0.496
(1.00)
0.632
(1.00)
0.436
(1.00)
0.731
(1.00)
0.485
(1.00)
0.116
(1.00)
PDZD2 4 (10%) 37 1
(1.00)
1
(1.00)
0.161
(1.00)
0.236
(1.00)
0.498
(1.00)
0.634
(1.00)
0.436
(1.00)
0.733
(1.00)
1
(1.00)
0.346
(1.00)
CCDC135 3 (7%) 38 0.109
(1.00)
1
(1.00)
0.568
(1.00)
1
(1.00)
1
(1.00)
0.689
(1.00)
1
(1.00)
1
(1.00)
CEP72 3 (7%) 38 1
(1.00)
1
(1.00)
0.61
(1.00)
0.765
(1.00)
1
(1.00)
0.752
(1.00)
1
(1.00)
0.692
(1.00)
1
(1.00)
0.406
(1.00)
SMARCA2 3 (7%) 38 0.396
(1.00)
0.574
(1.00)
0.735
(1.00)
0.704
(1.00)
0.0338
(1.00)
0.0249
(1.00)
0.309
(1.00)
0.0584
(1.00)
0.716
(1.00)
0.0196
(1.00)
UBXN6 3 (7%) 38 1
(1.00)
1
(1.00)
1
(1.00)
0.756
(1.00)
0.822
(1.00)
0.691
(1.00)
0.331
(1.00)
1
(1.00)
YIPF2 3 (7%) 38 0.668
(1.00)
0.286
(1.00)
0.383
(1.00)
0.502
(1.00)
0.0714
(1.00)
0.112
(1.00)
0.703
(1.00)
1
(1.00)
0.23
(1.00)
0.407
(1.00)
GNAS 7 (17%) 34 0.202
(1.00)
0.31
(1.00)
0.381
(1.00)
0.786
(1.00)
0.348
(1.00)
0.845
(1.00)
0.0739
(1.00)
0.134
(1.00)
0.109
(1.00)
0.291
(1.00)
TGFBR2 3 (7%) 38 0.396
(1.00)
0.573
(1.00)
0.261
(1.00)
1
(1.00)
0.761
(1.00)
0.525
(1.00)
0.21
(1.00)
0.69
(1.00)
1
(1.00)
1
(1.00)
PARVB 3 (7%) 38 0.666
(1.00)
PTPN21 3 (7%) 38 0.271
(1.00)
0.286
(1.00)
0.0711
(1.00)
0.111
(1.00)
0.0927
(1.00)
1
(1.00)
0.0324
(1.00)
0.405
(1.00)
TSC22D1 3 (7%) 38 0.274
(1.00)
0.288
(1.00)
0.0231
(1.00)
0.0451
(1.00)
0.565
(1.00)
0.753
(1.00)
0.704
(1.00)
1
(1.00)
0.333
(1.00)
0.405
(1.00)
ZNF184 4 (10%) 37 0.247
(1.00)
0.118
(1.00)
0.363
(1.00)
0.353
(1.00)
0.68
(1.00)
1
(1.00)
0.0488
(1.00)
0.612
(1.00)
ANK3 5 (12%) 36 0.569
(1.00)
1
(1.00)
0.424
(1.00)
0.647
(1.00)
0.64
(1.00)
0.488
(1.00)
0.759
(1.00)
0.574
(1.00)
1
(1.00)
1
(1.00)
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
KRAS MUTATED 14 15 1
KRAS WILD-TYPE 7 2 2
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
KRAS MUTATED 15 5 9
KRAS WILD-TYPE 4 3 4
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
KRAS MUTATED 6 7 5 2 2
KRAS WILD-TYPE 2 2 2 4 0
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
KRAS MUTATED 3 7 6 5 1
KRAS WILD-TYPE 2 2 1 3 2
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
KRAS MUTATED 11 9 3
KRAS WILD-TYPE 5 3 3
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
KRAS MUTATED 10 10 3
KRAS WILD-TYPE 4 5 2
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
KRAS MUTATED 9 7 5 2
KRAS WILD-TYPE 3 4 3 1
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
KRAS MUTATED 17 4 2
KRAS WILD-TYPE 5 4 2
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
KRAS MUTATED 11 7 4
KRAS WILD-TYPE 5 6 0
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
KRAS MUTATED 13 7 2
KRAS WILD-TYPE 5 3 3
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TP53 MUTATED 8 15 1
TP53 WILD-TYPE 13 2 2

Figure S1.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TP53 MUTATED 13 3 7
TP53 WILD-TYPE 6 5 6
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TP53 MUTATED 7 5 3 1 2
TP53 WILD-TYPE 1 4 4 5 0
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0882 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TP53 MUTATED 4 5 6 3 0
TP53 WILD-TYPE 1 4 1 5 3
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TP53 MUTATED 8 8 3
TP53 WILD-TYPE 8 4 3
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TP53 MUTATED 8 8 3
TP53 WILD-TYPE 6 7 2
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TP53 MUTATED 7 6 4 2
TP53 WILD-TYPE 5 5 4 1
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TP53 MUTATED 13 4 2
TP53 WILD-TYPE 9 4 2
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TP53 MUTATED 9 7 3
TP53 WILD-TYPE 7 6 1
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TP53 MUTATED 11 6 2
TP53 WILD-TYPE 7 4 3
'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
C19ORF55 MUTATED 3 4 0
C19ORF55 WILD-TYPE 18 13 3
'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
C19ORF55 MUTATED 5 0 2
C19ORF55 WILD-TYPE 14 8 11
'C19ORF55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
C19ORF55 MUTATED 4 1 1 0 0
C19ORF55 WILD-TYPE 4 8 6 6 2
'C19ORF55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
C19ORF55 MUTATED 2 1 2 1 0
C19ORF55 WILD-TYPE 3 8 5 7 3
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
C19ORF55 MUTATED 2 3 1
C19ORF55 WILD-TYPE 14 9 5
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
C19ORF55 MUTATED 3 2 1
C19ORF55 WILD-TYPE 11 13 4
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
C19ORF55 MUTATED 3 1 1 1
C19ORF55 WILD-TYPE 9 10 7 2
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
C19ORF55 MUTATED 5 0 1
C19ORF55 WILD-TYPE 17 8 3
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
C19ORF55 MUTATED 3 2 1
C19ORF55 WILD-TYPE 13 11 3
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
C19ORF55 MUTATED 3 2 1
C19ORF55 WILD-TYPE 15 8 4
'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
B4GALT2 MUTATED 2 2 1
B4GALT2 WILD-TYPE 19 15 2
'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
B4GALT2 MUTATED 2 1 2
B4GALT2 WILD-TYPE 17 7 11
'B4GALT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
B4GALT2 MUTATED 2 1 1 0 0
B4GALT2 WILD-TYPE 6 8 6 6 2
'B4GALT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
B4GALT2 MUTATED 1 1 1 1 0
B4GALT2 WILD-TYPE 4 8 6 7 3
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
B4GALT2 MUTATED 2 3 0
B4GALT2 WILD-TYPE 14 9 6
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
B4GALT2 MUTATED 3 2 0
B4GALT2 WILD-TYPE 11 13 5
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
B4GALT2 MUTATED 3 1 1 0
B4GALT2 WILD-TYPE 9 10 7 3
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
B4GALT2 MUTATED 4 1 0
B4GALT2 WILD-TYPE 18 7 4
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
B4GALT2 MUTATED 2 2 1
B4GALT2 WILD-TYPE 14 11 3
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
B4GALT2 MUTATED 4 1 0
B4GALT2 WILD-TYPE 14 9 5
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00682 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CDKN2A MUTATED 0 6 1
CDKN2A WILD-TYPE 21 11 2

Figure S2.  Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CDKN2A MUTATED 6 1 0
CDKN2A WILD-TYPE 13 7 13
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
CDKN2A MUTATED 2 0 1 1 0
CDKN2A WILD-TYPE 6 9 6 5 2
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
CDKN2A MUTATED 0 0 3 1 0
CDKN2A WILD-TYPE 5 9 4 7 3
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 13 9 6
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 11 12 5
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CDKN2A MUTATED 3 3 0 0
CDKN2A WILD-TYPE 9 8 8 3
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 19 5 4
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CDKN2A MUTATED 4 0 2
CDKN2A WILD-TYPE 12 13 2

Figure S3.  Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 15 7 5
'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
NFIL3 MUTATED 4 2 0
NFIL3 WILD-TYPE 17 15 3
'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NFIL3 MUTATED 4 0 2
NFIL3 WILD-TYPE 15 8 11
'NFIL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
NFIL3 MUTATED 1 0 1 1 1
NFIL3 WILD-TYPE 7 9 6 5 1
'NFIL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
NFIL3 MUTATED 0 0 2 1 1
NFIL3 WILD-TYPE 5 9 5 7 2
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
NFIL3 MUTATED 3 2 1
NFIL3 WILD-TYPE 13 10 5
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
NFIL3 MUTATED 1 4 1
NFIL3 WILD-TYPE 13 11 4
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
NFIL3 MUTATED 3 1 1 1
NFIL3 WILD-TYPE 9 10 7 2
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
NFIL3 MUTATED 6 0 0
NFIL3 WILD-TYPE 16 8 4
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
NFIL3 MUTATED 4 2 0
NFIL3 WILD-TYPE 12 11 4
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
NFIL3 MUTATED 5 1 0
NFIL3 WILD-TYPE 13 9 5
'OTOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
OTOF MUTATED 7 1 1
OTOF WILD-TYPE 14 16 2
'OTOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OTOF MUTATED 3 3 3
OTOF WILD-TYPE 16 5 10
'OTOF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
OTOF MUTATED 1 3 3 0 0
OTOF WILD-TYPE 7 6 4 6 2
'OTOF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
OTOF MUTATED 1 3 0 3 0
OTOF WILD-TYPE 4 6 7 5 3
'OTOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
OTOF MUTATED 3 3 2
OTOF WILD-TYPE 13 9 4
'OTOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
OTOF MUTATED 3 4 1
OTOF WILD-TYPE 11 11 4
'OTOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
OTOF MUTATED 2 3 3 0
OTOF WILD-TYPE 10 8 5 3
'OTOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
OTOF MUTATED 5 2 1
OTOF WILD-TYPE 17 6 3
'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
OTOF MUTATED 4 4 0
OTOF WILD-TYPE 12 9 4
'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'OTOF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
OTOF MUTATED 4 3 1
OTOF WILD-TYPE 14 7 4
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
IRS1 MUTATED 3 3 0
IRS1 WILD-TYPE 18 14 3
'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IRS1 MUTATED 3 2 1
IRS1 WILD-TYPE 16 6 12
'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
IRS1 MUTATED 1 0 1 1 0
IRS1 WILD-TYPE 7 9 6 5 2
'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
IRS1 MUTATED 1 0 0 1 1
IRS1 WILD-TYPE 4 9 7 7 2
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
IRS1 MUTATED 1 4 1
IRS1 WILD-TYPE 15 8 5
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
IRS1 MUTATED 4 1 1
IRS1 WILD-TYPE 10 14 4
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
IRS1 MUTATED 1 4 0 1
IRS1 WILD-TYPE 11 7 8 2
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
IRS1 MUTATED 2 3 1
IRS1 WILD-TYPE 20 5 3
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
IRS1 MUTATED 2 2 2
IRS1 WILD-TYPE 14 11 2
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
IRS1 MUTATED 2 2 2
IRS1 WILD-TYPE 16 8 3
'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
GAS2L2 MUTATED 3 3 0
GAS2L2 WILD-TYPE 18 14 3
'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GAS2L2 MUTATED 4 1 1
GAS2L2 WILD-TYPE 15 7 12
'GAS2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
GAS2L2 MUTATED 2 1 1 0 1
GAS2L2 WILD-TYPE 6 8 6 6 1
'GAS2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
GAS2L2 MUTATED 1 1 2 1 0
GAS2L2 WILD-TYPE 4 8 5 7 3
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
GAS2L2 MUTATED 2 1 1
GAS2L2 WILD-TYPE 14 11 5
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
GAS2L2 MUTATED 2 2 0
GAS2L2 WILD-TYPE 12 13 5
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
GAS2L2 MUTATED 1 2 1 0
GAS2L2 WILD-TYPE 11 9 7 3
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
GAS2L2 MUTATED 3 1 0
GAS2L2 WILD-TYPE 19 7 4
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
GAS2L2 MUTATED 2 2 0
GAS2L2 WILD-TYPE 14 11 4
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
GAS2L2 MUTATED 2 2 0
GAS2L2 WILD-TYPE 16 8 5
'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
RBM10 MUTATED 2 3 1
RBM10 WILD-TYPE 19 14 2
'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM10 MUTATED 4 2 0
RBM10 WILD-TYPE 15 6 13
'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
RBM10 MUTATED 1 1 3 0 1
RBM10 WILD-TYPE 7 8 4 6 1
'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
RBM10 MUTATED 1 1 1 3 0
RBM10 WILD-TYPE 4 8 6 5 3
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
RBM10 MUTATED 1 3 1
RBM10 WILD-TYPE 15 9 5
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
RBM10 MUTATED 4 1 0
RBM10 WILD-TYPE 10 14 5
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
RBM10 MUTATED 1 4 0 0
RBM10 WILD-TYPE 11 7 8 3
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
RBM10 MUTATED 2 3 0
RBM10 WILD-TYPE 20 5 4
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
RBM10 MUTATED 2 2 1
RBM10 WILD-TYPE 14 11 3
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
RBM10 MUTATED 1 4 0
RBM10 WILD-TYPE 17 6 5

Figure S4.  Get High-res Image Gene #10: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
APP MUTATED 5 1 0
APP WILD-TYPE 16 16 3
'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
APP MUTATED 2 1 3
APP WILD-TYPE 17 7 10
'APP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
APP MUTATED 1 2 1 1 0
APP WILD-TYPE 7 7 6 5 2
'APP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
APP MUTATED 1 2 0 1 1
APP WILD-TYPE 4 7 7 7 2
'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
APP MUTATED 3 1 1
APP WILD-TYPE 13 11 5
'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
APP MUTATED 1 3 1
APP WILD-TYPE 13 12 4
'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
APP MUTATED 1 1 2 1
APP WILD-TYPE 11 10 6 2
'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
APP MUTATED 4 0 1
APP WILD-TYPE 18 8 3
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
APP MUTATED 3 2 0
APP WILD-TYPE 13 11 4
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'APP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
APP MUTATED 3 1 1
APP WILD-TYPE 15 9 4
'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
IPP MUTATED 4 1 0
IPP WILD-TYPE 17 16 3
'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IPP MUTATED 2 0 3
IPP WILD-TYPE 17 8 10
'IPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
IPP MUTATED 2 0 2 1 0
IPP WILD-TYPE 6 9 5 5 2
'IPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
IPP MUTATED 2 0 0 2 1
IPP WILD-TYPE 3 9 7 6 2
'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
IPP MUTATED 1 2 2
IPP WILD-TYPE 15 10 4
'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
IPP MUTATED 2 1 2
IPP WILD-TYPE 12 14 3
'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
IPP MUTATED 0 2 2 1
IPP WILD-TYPE 12 9 6 2
'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
IPP MUTATED 3 0 2
IPP WILD-TYPE 19 8 2
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
IPP MUTATED 3 2 0
IPP WILD-TYPE 13 11 4
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'IPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
IPP MUTATED 1 2 2
IPP WILD-TYPE 17 8 3
'MAMLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
MAMLD1 MUTATED 4 3 0
MAMLD1 WILD-TYPE 17 14 3
'MAMLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MAMLD1 MUTATED 4 1 2
MAMLD1 WILD-TYPE 15 7 11
'MAMLD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
MAMLD1 MUTATED 2 1 1 1 0
MAMLD1 WILD-TYPE 6 8 6 5 2
'MAMLD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
MAMLD1 MUTATED 1 1 1 1 1
MAMLD1 WILD-TYPE 4 8 6 7 2
'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
MAMLD1 MUTATED 4 3 0
MAMLD1 WILD-TYPE 12 9 6
'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
MAMLD1 MUTATED 4 3 0
MAMLD1 WILD-TYPE 10 12 5
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
MAMLD1 MUTATED 2 3 2 0
MAMLD1 WILD-TYPE 10 8 6 3
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
MAMLD1 MUTATED 6 1 0
MAMLD1 WILD-TYPE 16 7 4
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
MAMLD1 MUTATED 4 2 1
MAMLD1 WILD-TYPE 12 11 3
'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
MAMLD1 MUTATED 4 2 1
MAMLD1 WILD-TYPE 14 8 4
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 19 15 3
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 17 6 13
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
ARHGAP18 MUTATED 2 1 1
ARHGAP18 WILD-TYPE 14 11 5
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
ARHGAP18 MUTATED 3 1 0
ARHGAP18 WILD-TYPE 11 14 5
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
ARHGAP18 MUTATED 2 2 0 0
ARHGAP18 WILD-TYPE 10 9 8 3
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 20 6 4
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
ARHGAP18 MUTATED 2 2 0
ARHGAP18 WILD-TYPE 14 11 4
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
ARHGAP18 MUTATED 1 2 1
ARHGAP18 WILD-TYPE 17 8 4
'PHF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S139.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PHF8 MUTATED 1 3 1
PHF8 WILD-TYPE 20 14 2
'PHF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S140.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PHF8 MUTATED 4 1 0
PHF8 WILD-TYPE 15 7 13
'PHF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
PHF8 MUTATED 2 0 1 1 0
PHF8 WILD-TYPE 6 9 6 5 2
'PHF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
PHF8 MUTATED 1 0 1 1 1
PHF8 WILD-TYPE 4 9 6 7 2
'PHF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PHF8 MUTATED 4 0 0
PHF8 WILD-TYPE 12 12 6
'PHF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
PHF8 MUTATED 0 4 0
PHF8 WILD-TYPE 14 11 5
'PHF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
PHF8 MUTATED 4 0 0 0
PHF8 WILD-TYPE 8 11 8 3
'PHF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
PHF8 MUTATED 4 0 0
PHF8 WILD-TYPE 18 8 4
'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
PHF8 MUTATED 3 0 0
PHF8 WILD-TYPE 13 13 4
'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'PHF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
PHF8 MUTATED 3 0 0
PHF8 WILD-TYPE 15 10 5
'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S149.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
THBS4 MUTATED 4 1 1
THBS4 WILD-TYPE 17 16 2
'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S150.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
THBS4 MUTATED 3 1 2
THBS4 WILD-TYPE 16 7 11
'THBS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
THBS4 MUTATED 2 2 2 0 0
THBS4 WILD-TYPE 6 7 5 6 2
'THBS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
THBS4 MUTATED 1 2 1 2 0
THBS4 WILD-TYPE 4 7 6 6 3
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
THBS4 MUTATED 3 1 2
THBS4 WILD-TYPE 13 11 4
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
THBS4 MUTATED 2 3 1
THBS4 WILD-TYPE 12 12 4
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
THBS4 MUTATED 2 2 1 1
THBS4 WILD-TYPE 10 9 7 2
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
THBS4 MUTATED 4 1 1
THBS4 WILD-TYPE 18 7 3
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
THBS4 MUTATED 4 2 0
THBS4 WILD-TYPE 12 11 4
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'THBS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
THBS4 MUTATED 3 2 1
THBS4 WILD-TYPE 15 8 4
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S159.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SMAD4 MUTATED 3 4 0
SMAD4 WILD-TYPE 18 13 3
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S160.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SMAD4 MUTATED 5 1 1
SMAD4 WILD-TYPE 14 7 12
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SMAD4 MUTATED 1 1 4 1 0
SMAD4 WILD-TYPE 7 8 3 5 2
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SMAD4 MUTATED 1 1 1 4 0
SMAD4 WILD-TYPE 4 8 6 4 3
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SMAD4 MUTATED 2 4 0
SMAD4 WILD-TYPE 14 8 6
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SMAD4 MUTATED 4 2 0
SMAD4 WILD-TYPE 10 13 5
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SMAD4 MUTATED 1 4 1 0
SMAD4 WILD-TYPE 11 7 7 3
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SMAD4 MUTATED 4 2 0
SMAD4 WILD-TYPE 18 6 4
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SMAD4 MUTATED 3 1 2
SMAD4 WILD-TYPE 13 12 2
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SMAD4 MUTATED 3 3 0
SMAD4 WILD-TYPE 15 7 5
'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S169.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PTPRF MUTATED 3 3 1
PTPRF WILD-TYPE 18 14 2
'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S170.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PTPRF MUTATED 5 1 1
PTPRF WILD-TYPE 14 7 12
'PTPRF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
PTPRF MUTATED 1 1 2 1 0
PTPRF WILD-TYPE 7 8 5 5 2
'PTPRF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
PTPRF MUTATED 1 1 1 2 0
PTPRF WILD-TYPE 4 8 6 6 3
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PTPRF MUTATED 2 3 2
PTPRF WILD-TYPE 14 9 4
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
PTPRF MUTATED 4 2 1
PTPRF WILD-TYPE 10 13 4
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
PTPRF MUTATED 2 4 0 1
PTPRF WILD-TYPE 10 7 8 2
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
PTPRF MUTATED 4 2 1
PTPRF WILD-TYPE 18 6 3
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
PTPRF MUTATED 4 2 1
PTPRF WILD-TYPE 12 11 3
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'PTPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
PTPRF MUTATED 2 4 1
PTPRF WILD-TYPE 16 6 4
'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S179.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
MED12 MUTATED 6 0 0
MED12 WILD-TYPE 15 17 3

Figure S5.  Get High-res Image Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S180.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MED12 MUTATED 2 0 4
MED12 WILD-TYPE 17 8 9
'MED12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
MED12 MUTATED 0 2 1 0 1
MED12 WILD-TYPE 8 7 6 6 1
'MED12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
MED12 MUTATED 0 2 1 1 0
MED12 WILD-TYPE 5 7 6 7 3
'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
MED12 MUTATED 3 1 2
MED12 WILD-TYPE 13 11 4
'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
MED12 MUTATED 2 2 2
MED12 WILD-TYPE 12 13 3
'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
MED12 MUTATED 2 1 1 2
MED12 WILD-TYPE 10 10 7 1
'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
MED12 MUTATED 5 0 1
MED12 WILD-TYPE 17 8 3
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
MED12 MUTATED 3 3 0
MED12 WILD-TYPE 13 10 4
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'MED12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
MED12 MUTATED 4 1 1
MED12 WILD-TYPE 14 9 4
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S189.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
BMP2K MUTATED 3 1 0
BMP2K WILD-TYPE 18 16 3
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S190.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BMP2K MUTATED 2 0 2
BMP2K WILD-TYPE 17 8 11
'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
BMP2K MUTATED 0 1 2 0 1
BMP2K WILD-TYPE 8 8 5 6 1
'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
BMP2K MUTATED 0 1 1 2 0
BMP2K WILD-TYPE 5 8 6 6 3
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
BMP2K MUTATED 1 2 1
BMP2K WILD-TYPE 15 10 5
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
BMP2K MUTATED 2 1 1
BMP2K WILD-TYPE 12 14 4
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
BMP2K MUTATED 0 2 1 1
BMP2K WILD-TYPE 12 9 7 2
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
BMP2K MUTATED 4 0 0
BMP2K WILD-TYPE 18 8 4
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
BMP2K MUTATED 2 2 0
BMP2K WILD-TYPE 14 11 4
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
BMP2K MUTATED 2 2 0
BMP2K WILD-TYPE 16 8 5
'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S199.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
ZMYM5 MUTATED 2 2 0
ZMYM5 WILD-TYPE 19 15 3
'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S200.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZMYM5 MUTATED 3 0 1
ZMYM5 WILD-TYPE 16 8 12
'ZMYM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
ZMYM5 MUTATED 0 2 1 0 0
ZMYM5 WILD-TYPE 8 7 6 6 2
'ZMYM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
ZMYM5 MUTATED 0 2 0 1 0
ZMYM5 WILD-TYPE 5 7 7 7 3
'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
ZMYM5 MUTATED 3 1 0
ZMYM5 WILD-TYPE 13 11 6
'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
ZMYM5 MUTATED 2 2 0
ZMYM5 WILD-TYPE 12 13 5
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
ZMYM5 MUTATED 2 1 1 0
ZMYM5 WILD-TYPE 10 10 7 3
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
ZMYM5 MUTATED 4 0 0
ZMYM5 WILD-TYPE 18 8 4
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
ZMYM5 MUTATED 3 1 0
ZMYM5 WILD-TYPE 13 12 4
'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
ZMYM5 MUTATED 2 2 0
ZMYM5 WILD-TYPE 16 8 5
'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S209.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SYT15 MUTATED 3 0 1
SYT15 WILD-TYPE 18 17 2
'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S210.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SYT15 MUTATED 3 1 0
SYT15 WILD-TYPE 16 7 13
'SYT15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SYT15 MUTATED 0 1 2 0 0
SYT15 WILD-TYPE 8 8 5 6 2
'SYT15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SYT15 MUTATED 0 1 0 2 0
SYT15 WILD-TYPE 5 8 7 6 3
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SYT15 MUTATED 2 2 0
SYT15 WILD-TYPE 14 10 6
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SYT15 MUTATED 2 2 0
SYT15 WILD-TYPE 12 13 5
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SYT15 MUTATED 2 2 0 0
SYT15 WILD-TYPE 10 9 8 3
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SYT15 MUTATED 3 1 0
SYT15 WILD-TYPE 19 7 4
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SYT15 MUTATED 3 1 0
SYT15 WILD-TYPE 13 12 4
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'SYT15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SYT15 MUTATED 2 1 1
SYT15 WILD-TYPE 16 9 4
'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S219.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PLAU MUTATED 4 0 0
PLAU WILD-TYPE 17 17 3
'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S220.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PLAU MUTATED 1 1 2
PLAU WILD-TYPE 18 7 11
'PLAU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
PLAU MUTATED 1 1 1 0 0
PLAU WILD-TYPE 7 8 6 6 2
'PLAU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
PLAU MUTATED 1 1 0 1 0
PLAU WILD-TYPE 4 8 7 7 3
'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PLAU MUTATED 1 2 1
PLAU WILD-TYPE 15 10 5
'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
PLAU MUTATED 2 1 1
PLAU WILD-TYPE 12 14 4
'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
PLAU MUTATED 0 2 1 1
PLAU WILD-TYPE 12 9 7 2
'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
PLAU MUTATED 2 1 1
PLAU WILD-TYPE 20 7 3
'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
PLAU MUTATED 1 3 0
PLAU WILD-TYPE 15 10 4
'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'PLAU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
PLAU MUTATED 1 1 2
PLAU WILD-TYPE 17 9 3
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S229.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
MEPCE MUTATED 2 1 1
MEPCE WILD-TYPE 19 16 2
'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S230.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MEPCE MUTATED 3 0 1
MEPCE WILD-TYPE 16 8 12
'MEPCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
MEPCE MUTATED 0 1 2 0 0
MEPCE WILD-TYPE 8 8 5 6 2
'MEPCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
MEPCE MUTATED 0 1 0 2 0
MEPCE WILD-TYPE 5 8 7 6 3
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
MEPCE MUTATED 3 1 0
MEPCE WILD-TYPE 13 11 6
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
MEPCE MUTATED 1 3 0
MEPCE WILD-TYPE 13 12 5
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
MEPCE MUTATED 2 1 1 0
MEPCE WILD-TYPE 10 10 7 3
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
MEPCE MUTATED 4 0 0
MEPCE WILD-TYPE 18 8 4
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
MEPCE MUTATED 3 0 0
MEPCE WILD-TYPE 13 13 4
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'MEPCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
MEPCE MUTATED 2 1 0
MEPCE WILD-TYPE 16 9 5
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S239.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
ZMIZ1 MUTATED 4 1 0
ZMIZ1 WILD-TYPE 17 16 3
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S240.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZMIZ1 MUTATED 2 1 2
ZMIZ1 WILD-TYPE 17 7 11
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
ZMIZ1 MUTATED 1 3 1 0 0
ZMIZ1 WILD-TYPE 7 6 6 6 2
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
ZMIZ1 MUTATED 1 3 0 1 0
ZMIZ1 WILD-TYPE 4 6 7 7 3
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
ZMIZ1 MUTATED 3 1 1
ZMIZ1 WILD-TYPE 13 11 5
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
ZMIZ1 MUTATED 2 3 0
ZMIZ1 WILD-TYPE 12 12 5
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
ZMIZ1 MUTATED 1 2 2 0
ZMIZ1 WILD-TYPE 11 9 6 3
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
ZMIZ1 MUTATED 4 1 0
ZMIZ1 WILD-TYPE 18 7 4
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
ZMIZ1 MUTATED 3 2 0
ZMIZ1 WILD-TYPE 13 11 4
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
ZMIZ1 MUTATED 3 2 0
ZMIZ1 WILD-TYPE 15 8 5
'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S249.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SLC39A5 MUTATED 3 0 1
SLC39A5 WILD-TYPE 18 17 2
'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S250.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SLC39A5 MUTATED 1 0 3
SLC39A5 WILD-TYPE 18 8 10
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SLC39A5 MUTATED 2 1 1
SLC39A5 WILD-TYPE 14 11 5
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SLC39A5 MUTATED 1 2 1
SLC39A5 WILD-TYPE 13 13 4
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SLC39A5 MUTATED 0 1 2 1
SLC39A5 WILD-TYPE 12 10 6 2
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SLC39A5 MUTATED 2 1 1
SLC39A5 WILD-TYPE 20 7 3
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SLC39A5 MUTATED 1 2 1
SLC39A5 WILD-TYPE 15 11 3
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SLC39A5 MUTATED 2 1 1
SLC39A5 WILD-TYPE 16 9 4
'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S257.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
GUCY2F MUTATED 4 0 1
GUCY2F WILD-TYPE 17 17 2
'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S258.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GUCY2F MUTATED 2 0 3
GUCY2F WILD-TYPE 17 8 10
'GUCY2F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S259.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
GUCY2F MUTATED 0 1 1 1 1
GUCY2F WILD-TYPE 8 8 6 5 1
'GUCY2F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S260.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
GUCY2F MUTATED 0 1 1 1 1
GUCY2F WILD-TYPE 5 8 6 7 2
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
GUCY2F MUTATED 2 2 1
GUCY2F WILD-TYPE 14 10 5
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
GUCY2F MUTATED 2 2 1
GUCY2F WILD-TYPE 12 13 4
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
GUCY2F MUTATED 0 2 2 1
GUCY2F WILD-TYPE 12 9 6 2
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
GUCY2F MUTATED 4 1 0
GUCY2F WILD-TYPE 18 7 4
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
GUCY2F MUTATED 3 1 1
GUCY2F WILD-TYPE 13 12 3
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
GUCY2F MUTATED 3 2 0
GUCY2F WILD-TYPE 15 8 5
'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S267.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
EDC4 MUTATED 2 2 1
EDC4 WILD-TYPE 19 15 2
'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S268.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EDC4 MUTATED 4 0 1
EDC4 WILD-TYPE 15 8 12
'EDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S269.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
EDC4 MUTATED 2 1 1 0 0
EDC4 WILD-TYPE 6 8 6 6 2
'EDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S270.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
EDC4 MUTATED 0 1 2 1 0
EDC4 WILD-TYPE 5 8 5 7 3
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
EDC4 MUTATED 2 2 0
EDC4 WILD-TYPE 14 10 6
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
EDC4 MUTATED 2 2 0
EDC4 WILD-TYPE 12 13 5
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
EDC4 MUTATED 1 2 1 0
EDC4 WILD-TYPE 11 9 7 3
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
EDC4 MUTATED 3 1 0
EDC4 WILD-TYPE 19 7 4
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
EDC4 MUTATED 2 1 1
EDC4 WILD-TYPE 14 12 3
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'EDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
EDC4 MUTATED 2 2 0
EDC4 WILD-TYPE 16 8 5
'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S277.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SEH1L MUTATED 2 0 1
SEH1L WILD-TYPE 19 17 2
'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S278.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SEH1L MUTATED 1 1 1
SEH1L WILD-TYPE 18 7 12
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 1

Table S279.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SEH1L MUTATED 0 3 0
SEH1L WILD-TYPE 16 9 6
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S280.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SEH1L MUTATED 2 1 0
SEH1L WILD-TYPE 12 14 5
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SEH1L MUTATED 0 2 1 0
SEH1L WILD-TYPE 12 9 7 3
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SEH1L MUTATED 2 1 0
SEH1L WILD-TYPE 20 7 4
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SEH1L MUTATED 1 2 0
SEH1L WILD-TYPE 15 11 4
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'SEH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SEH1L MUTATED 1 2 0
SEH1L WILD-TYPE 17 8 5
'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S285.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SLC4A3 MUTATED 1 2 0
SLC4A3 WILD-TYPE 20 15 3
'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S286.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SLC4A3 MUTATED 2 1 0
SLC4A3 WILD-TYPE 17 7 13
'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S287.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SLC4A3 MUTATED 1 1 1 0 0
SLC4A3 WILD-TYPE 7 8 6 6 2
'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S288.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SLC4A3 MUTATED 1 1 0 1 0
SLC4A3 WILD-TYPE 4 8 7 7 3
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S289.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SLC4A3 MUTATED 1 2 0
SLC4A3 WILD-TYPE 15 10 6
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S290.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SLC4A3 MUTATED 3 0 0
SLC4A3 WILD-TYPE 11 15 5
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SLC4A3 MUTATED 1 2 0 0
SLC4A3 WILD-TYPE 11 9 8 3
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SLC4A3 MUTATED 2 1 0
SLC4A3 WILD-TYPE 20 7 4
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SLC4A3 MUTATED 2 1 0
SLC4A3 WILD-TYPE 14 12 4
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SLC4A3 MUTATED 0 3 0
SLC4A3 WILD-TYPE 18 7 5

Figure S6.  Get High-res Image Gene #30: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD99L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S295.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CD99L2 MUTATED 2 2 0
CD99L2 WILD-TYPE 19 15 3
'CD99L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S296.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CD99L2 MUTATED 1 1 2
CD99L2 WILD-TYPE 18 7 11
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S297.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CD99L2 MUTATED 1 2 1
CD99L2 WILD-TYPE 15 10 5
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S298.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CD99L2 MUTATED 2 1 1
CD99L2 WILD-TYPE 12 14 4
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S299.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CD99L2 MUTATED 0 2 1 1
CD99L2 WILD-TYPE 12 9 7 2
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S300.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CD99L2 MUTATED 2 1 1
CD99L2 WILD-TYPE 20 7 3
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CD99L2 MUTATED 3 1 0
CD99L2 WILD-TYPE 13 12 4
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CD99L2 MUTATED 1 2 1
CD99L2 WILD-TYPE 17 8 4
'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S303.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SBNO1 MUTATED 1 3 0
SBNO1 WILD-TYPE 20 14 3
'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S304.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SBNO1 MUTATED 4 0 0
SBNO1 WILD-TYPE 15 8 13
'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S305.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SBNO1 MUTATED 1 2 0 1 0
SBNO1 WILD-TYPE 7 7 7 5 2
'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S306.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SBNO1 MUTATED 1 2 1 0 0
SBNO1 WILD-TYPE 4 7 6 8 3
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S307.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SBNO1 MUTATED 3 1 0
SBNO1 WILD-TYPE 13 11 6
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S308.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SBNO1 MUTATED 2 2 0
SBNO1 WILD-TYPE 12 13 5
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S309.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SBNO1 MUTATED 3 1 0 0
SBNO1 WILD-TYPE 9 10 8 3
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S310.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SBNO1 MUTATED 4 0 0
SBNO1 WILD-TYPE 18 8 4
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SBNO1 MUTATED 3 0 1
SBNO1 WILD-TYPE 13 13 3
'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SBNO1 MUTATED 3 1 0
SBNO1 WILD-TYPE 15 9 5
'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S313.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
NPNT MUTATED 3 0 0
NPNT WILD-TYPE 18 17 3
'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 1

Table S314.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NPNT MUTATED 0 0 3
NPNT WILD-TYPE 19 8 10

Figure S7.  Get High-res Image Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NPNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S315.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
NPNT MUTATED 1 1 0 1 0
NPNT WILD-TYPE 7 8 7 5 2
'NPNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S316.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
NPNT MUTATED 1 1 0 0 1
NPNT WILD-TYPE 4 8 7 8 2
'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S317.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
NPNT MUTATED 2 0 1
NPNT WILD-TYPE 14 12 5
'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S318.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
NPNT MUTATED 1 1 1
NPNT WILD-TYPE 13 14 4
'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S319.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
NPNT MUTATED 1 0 1 1
NPNT WILD-TYPE 11 11 7 2
'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S320.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
NPNT MUTATED 2 0 1
NPNT WILD-TYPE 20 8 3
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
NPNT MUTATED 2 1 0
NPNT WILD-TYPE 14 12 4
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'NPNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
NPNT MUTATED 2 0 1
NPNT WILD-TYPE 16 10 4
'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S323.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TMEM175 MUTATED 2 2 1
TMEM175 WILD-TYPE 19 15 2
'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S324.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TMEM175 MUTATED 3 1 1
TMEM175 WILD-TYPE 16 7 12
'TMEM175 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S325.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TMEM175 MUTATED 0 1 3 0 0
TMEM175 WILD-TYPE 8 8 4 6 2
'TMEM175 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S326.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TMEM175 MUTATED 0 1 0 3 0
TMEM175 WILD-TYPE 5 8 7 5 3
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S327.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TMEM175 MUTATED 2 3 0
TMEM175 WILD-TYPE 14 9 6
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S328.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TMEM175 MUTATED 3 2 0
TMEM175 WILD-TYPE 11 13 5
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S329.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TMEM175 MUTATED 1 3 1 0
TMEM175 WILD-TYPE 11 8 7 3
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S330.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TMEM175 MUTATED 4 1 0
TMEM175 WILD-TYPE 18 7 4
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TMEM175 MUTATED 5 0 0
TMEM175 WILD-TYPE 11 13 4
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TMEM175 MUTATED 2 3 0
TMEM175 WILD-TYPE 16 7 5
'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S333.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
IRX4 MUTATED 3 1 0
IRX4 WILD-TYPE 18 16 3
'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S334.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IRX4 MUTATED 1 0 3
IRX4 WILD-TYPE 18 8 10
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S335.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
IRX4 MUTATED 2 0 2
IRX4 WILD-TYPE 14 12 4
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S336.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
IRX4 MUTATED 1 1 2
IRX4 WILD-TYPE 13 14 3
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S337.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
IRX4 MUTATED 2 0 1 1
IRX4 WILD-TYPE 10 11 7 2
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 1

Table S338.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
IRX4 MUTATED 2 0 2
IRX4 WILD-TYPE 20 8 2
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S339.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
IRX4 MUTATED 1 2 0
IRX4 WILD-TYPE 15 11 4
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S340.  Gene #35: 'IRX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
IRX4 MUTATED 1 0 2
IRX4 WILD-TYPE 17 10 3
'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S341.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CLCC1 MUTATED 3 0 0
CLCC1 WILD-TYPE 18 17 3
'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S342.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CLCC1 MUTATED 0 1 2
CLCC1 WILD-TYPE 19 7 11
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S343.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CLCC1 MUTATED 1 1 1
CLCC1 WILD-TYPE 15 11 5
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S344.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CLCC1 MUTATED 1 1 1
CLCC1 WILD-TYPE 13 14 4
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S345.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CLCC1 MUTATED 0 1 1 1
CLCC1 WILD-TYPE 12 10 7 2
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S346.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CLCC1 MUTATED 1 1 1
CLCC1 WILD-TYPE 21 7 3
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S347.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CLCC1 MUTATED 1 2 0
CLCC1 WILD-TYPE 15 11 4
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S348.  Gene #36: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CLCC1 MUTATED 1 0 2
CLCC1 WILD-TYPE 17 10 3
'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
BTNL8 MUTATED 2 2 0
BTNL8 WILD-TYPE 19 15 3
'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S350.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BTNL8 MUTATED 3 1 0
BTNL8 WILD-TYPE 16 7 13
'BTNL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S351.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
BTNL8 MUTATED 1 1 2 0 0
BTNL8 WILD-TYPE 7 8 5 6 2
'BTNL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S352.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
BTNL8 MUTATED 1 1 0 2 0
BTNL8 WILD-TYPE 4 8 7 6 3
'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S353.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
BTNL8 MUTATED 0 3 1
BTNL8 WILD-TYPE 16 9 5
'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S354.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
BTNL8 MUTATED 4 0 0
BTNL8 WILD-TYPE 10 15 5

Figure S8.  Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 1

Table S355.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
BTNL8 MUTATED 0 4 0 0
BTNL8 WILD-TYPE 12 7 8 3

Figure S9.  Get High-res Image Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S356.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
BTNL8 MUTATED 2 2 0
BTNL8 WILD-TYPE 20 6 4
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S357.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
BTNL8 MUTATED 2 1 1
BTNL8 WILD-TYPE 14 12 3
'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S358.  Gene #37: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
BTNL8 MUTATED 1 3 0
BTNL8 WILD-TYPE 17 7 5
'SYNGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S359.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SYNGAP1 MUTATED 5 0 0
SYNGAP1 WILD-TYPE 16 17 3
'SYNGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S360.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SYNGAP1 MUTATED 2 1 2
SYNGAP1 WILD-TYPE 17 7 11
'SYNGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S361.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SYNGAP1 MUTATED 0 2 1 0 0
SYNGAP1 WILD-TYPE 8 7 6 6 2
'SYNGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S362.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SYNGAP1 MUTATED 0 2 0 1 0
SYNGAP1 WILD-TYPE 5 7 7 7 3
'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S363.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SYNGAP1 MUTATED 2 3 0
SYNGAP1 WILD-TYPE 14 9 6
'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S364.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SYNGAP1 MUTATED 2 3 0
SYNGAP1 WILD-TYPE 12 12 5
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S365.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SYNGAP1 MUTATED 1 2 2 0
SYNGAP1 WILD-TYPE 11 9 6 3
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S366.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SYNGAP1 MUTATED 4 1 0
SYNGAP1 WILD-TYPE 18 7 4
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S367.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SYNGAP1 MUTATED 3 2 0
SYNGAP1 WILD-TYPE 13 11 4
'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S368.  Gene #38: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SYNGAP1 MUTATED 3 1 1
SYNGAP1 WILD-TYPE 15 9 4
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S369.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
F8 MUTATED 1 3 0
F8 WILD-TYPE 20 14 3
'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S370.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
F8 MUTATED 4 0 0
F8 WILD-TYPE 15 8 13
'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S371.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
F8 MUTATED 1 0 2 0 0
F8 WILD-TYPE 7 9 5 6 2
'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S372.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
F8 MUTATED 0 0 1 2 0
F8 WILD-TYPE 5 9 6 6 3
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S373.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
F8 MUTATED 2 2 0
F8 WILD-TYPE 14 10 6
'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
F8 MUTATED 2 2 0
F8 WILD-TYPE 12 13 5
'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S375.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
F8 MUTATED 2 2 0 0
F8 WILD-TYPE 10 9 8 3
'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
F8 MUTATED 3 1 0
F8 WILD-TYPE 19 7 4
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S377.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
F8 MUTATED 3 0 1
F8 WILD-TYPE 13 13 3
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S378.  Gene #39: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
F8 MUTATED 2 2 0
F8 WILD-TYPE 16 8 5
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S379.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SORBS2 MUTATED 6 0 0
SORBS2 WILD-TYPE 15 17 3

Figure S10.  Get High-res Image Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S380.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SORBS2 MUTATED 2 0 4
SORBS2 WILD-TYPE 17 8 9
'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S381.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
SORBS2 MUTATED 1 3 1 0 0
SORBS2 WILD-TYPE 7 6 6 6 2
'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S382.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
SORBS2 MUTATED 1 3 0 1 0
SORBS2 WILD-TYPE 4 6 7 7 3
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S383.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SORBS2 MUTATED 3 1 1
SORBS2 WILD-TYPE 13 11 5
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S384.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SORBS2 MUTATED 1 3 1
SORBS2 WILD-TYPE 13 12 4
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S385.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SORBS2 MUTATED 1 1 2 1
SORBS2 WILD-TYPE 11 10 6 2
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S386.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SORBS2 MUTATED 4 0 1
SORBS2 WILD-TYPE 18 8 3
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S387.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SORBS2 MUTATED 3 2 0
SORBS2 WILD-TYPE 13 11 4
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S388.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SORBS2 MUTATED 3 1 1
SORBS2 WILD-TYPE 15 9 4
'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S389.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
NR4A3 MUTATED 2 1 1
NR4A3 WILD-TYPE 19 16 2
'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S390.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
NR4A3 MUTATED 3 0 1
NR4A3 WILD-TYPE 16 8 12
'NR4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S391.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
NR4A3 MUTATED 0 1 2 0 0
NR4A3 WILD-TYPE 8 8 5 6 2
'NR4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S392.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
NR4A3 MUTATED 0 1 0 2 0
NR4A3 WILD-TYPE 5 8 7 6 3
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S393.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 13 11 6
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S394.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
NR4A3 MUTATED 1 3 0
NR4A3 WILD-TYPE 13 12 5
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S395.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
NR4A3 MUTATED 2 1 1 0
NR4A3 WILD-TYPE 10 10 7 3
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S396.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
NR4A3 MUTATED 4 0 0
NR4A3 WILD-TYPE 18 8 4
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S397.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 13 12 4
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S398.  Gene #41: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
NR4A3 MUTATED 3 1 0
NR4A3 WILD-TYPE 15 9 5
'ZNF337 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S399.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
ZNF337 MUTATED 1 3 0
ZNF337 WILD-TYPE 20 14 3
'ZNF337 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S400.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ZNF337 MUTATED 3 1 0
ZNF337 WILD-TYPE 16 7 13
'ZNF337 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S401.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
ZNF337 MUTATED 1 1 2 0 0
ZNF337 WILD-TYPE 7 8 5 6 2
'ZNF337 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S402.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
ZNF337 MUTATED 1 1 0 2 0
ZNF337 WILD-TYPE 4 8 7 6 3
'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S403.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
ZNF337 MUTATED 1 3 0
ZNF337 WILD-TYPE 15 9 6
'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 1

Table S404.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
ZNF337 MUTATED 4 0 0
ZNF337 WILD-TYPE 10 15 5

Figure S11.  Get High-res Image Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S405.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
ZNF337 MUTATED 1 3 0 0
ZNF337 WILD-TYPE 11 8 8 3
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S406.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
ZNF337 MUTATED 2 2 0
ZNF337 WILD-TYPE 20 6 4
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S407.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
ZNF337 MUTATED 2 1 1
ZNF337 WILD-TYPE 14 12 3
'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S408.  Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
ZNF337 MUTATED 0 4 0
ZNF337 WILD-TYPE 18 6 5

Figure S12.  Get High-res Image Gene #42: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S409.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TAOK2 MUTATED 4 0 0
TAOK2 WILD-TYPE 17 17 3
'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S410.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TAOK2 MUTATED 1 0 3
TAOK2 WILD-TYPE 18 8 10
'TAOK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S411.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TAOK2 MUTATED 1 0 1 0 1
TAOK2 WILD-TYPE 7 9 6 6 1
'TAOK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S412.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TAOK2 MUTATED 1 0 1 1 0
TAOK2 WILD-TYPE 4 9 6 7 3
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 1

Table S413.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TAOK2 MUTATED 0 1 3
TAOK2 WILD-TYPE 16 11 3

Figure S13.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00295 (Fisher's exact test), Q value = 1

Table S414.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TAOK2 MUTATED 1 0 3
TAOK2 WILD-TYPE 13 15 2

Figure S14.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S415.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TAOK2 MUTATED 0 1 1 2
TAOK2 WILD-TYPE 12 10 7 1

Figure S15.  Get High-res Image Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S416.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TAOK2 MUTATED 2 0 2
TAOK2 WILD-TYPE 20 8 2
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S417.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TAOK2 MUTATED 1 3 0
TAOK2 WILD-TYPE 15 10 4
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S418.  Gene #43: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TAOK2 MUTATED 1 1 2
TAOK2 WILD-TYPE 17 9 3
'UNC5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S419.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
UNC5A MUTATED 3 1 0
UNC5A WILD-TYPE 18 16 3
'UNC5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S420.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
UNC5A MUTATED 2 0 2
UNC5A WILD-TYPE 17 8 11
'UNC5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S421.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
UNC5A MUTATED 1 1 1 0 1
UNC5A WILD-TYPE 7 8 6 6 1
'UNC5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S422.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
UNC5A MUTATED 1 1 1 1 0
UNC5A WILD-TYPE 4 8 6 7 3
'UNC5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S423.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
UNC5A MUTATED 1 1 1
UNC5A WILD-TYPE 15 11 5
'UNC5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S424.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
UNC5A MUTATED 2 0 1
UNC5A WILD-TYPE 12 15 4
'UNC5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S425.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
UNC5A MUTATED 1 1 0 1
UNC5A WILD-TYPE 11 10 8 2
'UNC5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S426.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
UNC5A MUTATED 2 0 1
UNC5A WILD-TYPE 20 8 3
'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S427.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
UNC5A MUTATED 2 1 0
UNC5A WILD-TYPE 14 12 4
'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S428.  Gene #44: 'UNC5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
UNC5A MUTATED 1 1 1
UNC5A WILD-TYPE 17 9 4
'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S429.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TNFSF9 MUTATED 3 1 0
TNFSF9 WILD-TYPE 18 16 3
'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S430.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TNFSF9 MUTATED 2 1 1
TNFSF9 WILD-TYPE 17 7 12
'TNFSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TNFSF9 MUTATED 1 1 1 0 0
TNFSF9 WILD-TYPE 7 8 6 6 2
'TNFSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S432.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TNFSF9 MUTATED 1 1 0 1 0
TNFSF9 WILD-TYPE 4 8 7 7 3
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S433.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 14 10 6
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S434.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 12 13 5
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S435.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TNFSF9 MUTATED 1 2 1 0
TNFSF9 WILD-TYPE 11 9 7 3
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S436.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TNFSF9 MUTATED 3 1 0
TNFSF9 WILD-TYPE 19 7 4
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TNFSF9 MUTATED 2 2 0
TNFSF9 WILD-TYPE 14 11 4
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S438.  Gene #45: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TNFSF9 MUTATED 2 1 1
TNFSF9 WILD-TYPE 16 9 4
'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S439.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TEX2 MUTATED 4 0 0
TEX2 WILD-TYPE 17 17 3
'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S440.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TEX2 MUTATED 1 1 2
TEX2 WILD-TYPE 18 7 11
'TEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S441.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TEX2 MUTATED 0 2 1 0 0
TEX2 WILD-TYPE 8 7 6 6 2
'TEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S442.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TEX2 MUTATED 0 2 0 1 0
TEX2 WILD-TYPE 5 7 7 7 3
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S443.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TEX2 MUTATED 1 1 2
TEX2 WILD-TYPE 15 11 4
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S444.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TEX2 MUTATED 3 0 1
TEX2 WILD-TYPE 11 15 4
'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S445.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TEX2 MUTATED 1 2 0 1
TEX2 WILD-TYPE 11 9 8 2
'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S446.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TEX2 MUTATED 2 1 1
TEX2 WILD-TYPE 20 7 3
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S447.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TEX2 MUTATED 2 2 0
TEX2 WILD-TYPE 14 11 4
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S448.  Gene #46: 'TEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TEX2 MUTATED 1 2 1
TEX2 WILD-TYPE 17 8 4
'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S449.  Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
RBM43 MUTATED 1 2 0
RBM43 WILD-TYPE 20 15 3
'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S450.  Gene #47: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM43 MUTATED 2 1 0
RBM43 WILD-TYPE 17 7 13
'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S451.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CIR1 MUTATED 2 0 1
CIR1 WILD-TYPE 19 17 2
'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CIR1 MUTATED 2 0 1
CIR1 WILD-TYPE 17 8 12
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S453.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CIR1 MUTATED 0 3 0
CIR1 WILD-TYPE 16 9 6
'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S454.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CIR1 MUTATED 2 1 0
CIR1 WILD-TYPE 12 14 5
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S455.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CIR1 MUTATED 0 2 1 0
CIR1 WILD-TYPE 12 9 7 3
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S456.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CIR1 MUTATED 2 1 0
CIR1 WILD-TYPE 20 7 4
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S457.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CIR1 MUTATED 1 1 1
CIR1 WILD-TYPE 15 12 3
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S458.  Gene #48: 'CIR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CIR1 MUTATED 1 2 0
CIR1 WILD-TYPE 17 8 5
'TOX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S459.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TOX4 MUTATED 2 1 1
TOX4 WILD-TYPE 19 16 2
'TOX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S460.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TOX4 MUTATED 3 0 1
TOX4 WILD-TYPE 16 8 12
'TOX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S461.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TOX4 MUTATED 1 0 1 1 0
TOX4 WILD-TYPE 7 9 6 5 2
'TOX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S462.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TOX4 MUTATED 1 0 1 1 0
TOX4 WILD-TYPE 4 9 6 7 3
'TOX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S463.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TOX4 MUTATED 1 2 1
TOX4 WILD-TYPE 15 10 5
'TOX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S464.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TOX4 MUTATED 2 1 1
TOX4 WILD-TYPE 12 14 4
'TOX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S465.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TOX4 MUTATED 1 2 0 1
TOX4 WILD-TYPE 11 9 8 2
'TOX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S466.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TOX4 MUTATED 2 1 1
TOX4 WILD-TYPE 20 7 3
'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S467.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TOX4 MUTATED 2 1 1
TOX4 WILD-TYPE 14 12 3
'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S468.  Gene #49: 'TOX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TOX4 MUTATED 1 2 1
TOX4 WILD-TYPE 17 8 4
'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S469.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
HIBCH MUTATED 2 0 1
HIBCH WILD-TYPE 19 17 2
'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S470.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
HIBCH MUTATED 0 1 2
HIBCH WILD-TYPE 19 7 11
'HIBCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S471.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
HIBCH MUTATED 0 1 0 2 0
HIBCH WILD-TYPE 8 8 7 4 2
'HIBCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S472.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
HIBCH MUTATED 0 1 1 1 0
HIBCH WILD-TYPE 5 8 6 7 3
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S473.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 15 11 5
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S474.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 13 14 4
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S475.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
HIBCH MUTATED 0 1 2 0
HIBCH WILD-TYPE 12 10 6 3
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S476.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 21 7 3
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S477.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
HIBCH MUTATED 0 3 0
HIBCH WILD-TYPE 16 10 4
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S478.  Gene #50: 'HIBCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
HIBCH MUTATED 1 1 1
HIBCH WILD-TYPE 17 9 4
'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S479.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CRAT MUTATED 3 0 0
CRAT WILD-TYPE 18 17 3
'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S480.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CRAT MUTATED 0 1 2
CRAT WILD-TYPE 19 7 11
'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 1

Table S481.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CRAT MUTATED 0 0 3
CRAT WILD-TYPE 16 12 3

Figure S16.  Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0248 (Fisher's exact test), Q value = 1

Table S482.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CRAT MUTATED 1 0 2
CRAT WILD-TYPE 13 15 3

Figure S17.  Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 1

Table S483.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CRAT MUTATED 0 1 0 2
CRAT WILD-TYPE 12 10 8 1

Figure S18.  Get High-res Image Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S484.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CRAT MUTATED 1 1 1
CRAT WILD-TYPE 21 7 3
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S485.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CRAT MUTATED 0 3 0
CRAT WILD-TYPE 16 10 4
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S486.  Gene #51: 'CRAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CRAT MUTATED 1 1 1
CRAT WILD-TYPE 17 9 4
'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S487.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
SRP14 MUTATED 2 0 1
SRP14 WILD-TYPE 19 17 2
'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S488.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
SRP14 MUTATED 1 0 2
SRP14 WILD-TYPE 18 8 11
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S489.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
SRP14 MUTATED 1 2 0
SRP14 WILD-TYPE 15 10 6
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S490.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
SRP14 MUTATED 1 2 0
SRP14 WILD-TYPE 13 13 5
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S491.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
SRP14 MUTATED 0 1 2 0
SRP14 WILD-TYPE 12 10 6 3
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S492.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
SRP14 MUTATED 2 1 0
SRP14 WILD-TYPE 20 7 4
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S493.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
SRP14 MUTATED 0 2 1
SRP14 WILD-TYPE 16 11 3
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494.  Gene #52: 'SRP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
SRP14 MUTATED 2 1 0
SRP14 WILD-TYPE 16 9 5
'PDZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S495.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PDZD7 MUTATED 3 1 0
PDZD7 WILD-TYPE 18 16 3
'PDZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S496.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PDZD7 MUTATED 2 1 1
PDZD7 WILD-TYPE 17 7 12
'PDZD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S497.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
PDZD7 MUTATED 0 1 1 1 0
PDZD7 WILD-TYPE 8 8 6 5 2
'PDZD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S498.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
PDZD7 MUTATED 0 1 0 1 1
PDZD7 WILD-TYPE 5 8 7 7 2
'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S499.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PDZD7 MUTATED 2 1 1
PDZD7 WILD-TYPE 14 11 5
'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S500.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
PDZD7 MUTATED 2 2 0
PDZD7 WILD-TYPE 12 13 5
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S501.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
PDZD7 MUTATED 1 2 1 0
PDZD7 WILD-TYPE 11 9 7 3
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S502.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
PDZD7 MUTATED 3 1 0
PDZD7 WILD-TYPE 19 7 4
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
PDZD7 MUTATED 2 1 0
PDZD7 WILD-TYPE 14 12 4
'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S504.  Gene #53: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
PDZD7 MUTATED 1 2 0
PDZD7 WILD-TYPE 17 8 5
'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S505.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
POP5 MUTATED 1 1 1
POP5 WILD-TYPE 20 16 2
'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S506.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 17 7 13
'POP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S507.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
POP5 MUTATED 1 1 1 0 0
POP5 WILD-TYPE 7 8 6 6 2
'POP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S508.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
POP5 MUTATED 1 1 0 1 0
POP5 WILD-TYPE 4 8 7 7 3
'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S509.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
POP5 MUTATED 1 1 1
POP5 WILD-TYPE 15 11 5
'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S510.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 12 14 5
'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S511.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
POP5 MUTATED 1 2 0 0
POP5 WILD-TYPE 11 9 8 3
'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S512.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 20 7 4
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S513.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
POP5 MUTATED 1 1 1
POP5 WILD-TYPE 15 12 3
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514.  Gene #54: 'POP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
POP5 MUTATED 2 1 0
POP5 WILD-TYPE 16 9 5
'UNC5D MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S515.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 19 16 3
'UNC5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S516.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 17 7 13
'UNC5D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S517.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
UNC5D MUTATED 1 1 1 0 0
UNC5D WILD-TYPE 7 8 6 6 2
'UNC5D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S518.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
UNC5D MUTATED 1 1 0 1 0
UNC5D WILD-TYPE 4 8 7 7 3
'UNC5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S519.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
UNC5D MUTATED 1 1 1
UNC5D WILD-TYPE 15 11 5
'UNC5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S520.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 12 14 5
'UNC5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S521.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
UNC5D MUTATED 1 2 0 0
UNC5D WILD-TYPE 11 9 8 3
'UNC5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S522.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 20 7 4
'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S523.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
UNC5D MUTATED 2 1 0
UNC5D WILD-TYPE 14 12 4
'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S524.  Gene #55: 'UNC5D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
UNC5D MUTATED 1 2 0
UNC5D WILD-TYPE 17 8 5
'FAM47C MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
FAM47C MUTATED 3 2 0
FAM47C WILD-TYPE 18 15 3
'FAM47C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S526.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
FAM47C MUTATED 2 1 2
FAM47C WILD-TYPE 17 7 11
'FAM47C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S527.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
FAM47C MUTATED 2 1 1 1 0
FAM47C WILD-TYPE 6 8 6 5 2
'FAM47C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S528.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
FAM47C MUTATED 2 1 0 1 1
FAM47C WILD-TYPE 3 8 7 7 2
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S529.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
FAM47C MUTATED 2 1 2
FAM47C WILD-TYPE 14 11 4
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S530.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
FAM47C MUTATED 2 2 1
FAM47C WILD-TYPE 12 13 4
'FAM47C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S531.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
FAM47C MUTATED 1 2 1 1
FAM47C WILD-TYPE 11 9 7 2
'FAM47C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S532.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
FAM47C MUTATED 2 2 1
FAM47C WILD-TYPE 20 6 3
'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S533.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
FAM47C MUTATED 3 2 0
FAM47C WILD-TYPE 13 11 4
'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S534.  Gene #56: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
FAM47C MUTATED 2 2 1
FAM47C WILD-TYPE 16 8 4
'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S535.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
TMEM184A MUTATED 3 1 0
TMEM184A WILD-TYPE 18 16 3
'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S536.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
TMEM184A MUTATED 1 1 2
TMEM184A WILD-TYPE 18 7 11
'TMEM184A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S537.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
TMEM184A MUTATED 2 0 1 0 0
TMEM184A WILD-TYPE 6 9 6 6 2
'TMEM184A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S538.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
TMEM184A MUTATED 2 0 0 1 0
TMEM184A WILD-TYPE 3 9 7 7 3
'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S539.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
TMEM184A MUTATED 0 2 2
TMEM184A WILD-TYPE 16 10 4

Figure S19.  Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S540.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
TMEM184A MUTATED 2 0 2
TMEM184A WILD-TYPE 12 15 3

Figure S20.  Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S541.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
TMEM184A MUTATED 0 2 1 1
TMEM184A WILD-TYPE 12 9 7 2
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S542.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
TMEM184A MUTATED 1 1 2
TMEM184A WILD-TYPE 21 7 2

Figure S21.  Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S543.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
TMEM184A MUTATED 2 2 0
TMEM184A WILD-TYPE 14 11 4
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S544.  Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
TMEM184A MUTATED 0 2 2
TMEM184A WILD-TYPE 18 8 3

Figure S22.  Get High-res Image Gene #57: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BEGAIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S545.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
BEGAIN MUTATED 4 0 0
BEGAIN WILD-TYPE 17 17 3
'BEGAIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S546.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BEGAIN MUTATED 1 0 3
BEGAIN WILD-TYPE 18 8 10
'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S547.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
BEGAIN MUTATED 2 1 1
BEGAIN WILD-TYPE 14 11 5
'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S548.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
BEGAIN MUTATED 1 2 1
BEGAIN WILD-TYPE 13 13 4
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S549.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
BEGAIN MUTATED 0 1 2 1
BEGAIN WILD-TYPE 12 10 6 2
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S550.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
BEGAIN MUTATED 3 0 1
BEGAIN WILD-TYPE 19 8 3
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S551.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
BEGAIN MUTATED 1 3 0
BEGAIN WILD-TYPE 15 10 4
'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S552.  Gene #58: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
BEGAIN MUTATED 2 1 1
BEGAIN WILD-TYPE 16 9 4
'PASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S553.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PASD1 MUTATED 3 1 1
PASD1 WILD-TYPE 18 16 2
'PASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S554.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PASD1 MUTATED 2 2 1
PASD1 WILD-TYPE 17 6 12
'PASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S555.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
PASD1 MUTATED 1 0 1 2 0
PASD1 WILD-TYPE 7 9 6 4 2
'PASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S556.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
PASD1 MUTATED 0 0 1 2 1
PASD1 WILD-TYPE 5 9 6 6 2
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S557.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PASD1 MUTATED 2 3 0
PASD1 WILD-TYPE 14 9 6
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S558.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
PASD1 MUTATED 3 2 0
PASD1 WILD-TYPE 11 13 5
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S559.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
PASD1 MUTATED 1 3 1 0
PASD1 WILD-TYPE 11 8 7 3
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S560.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
PASD1 MUTATED 3 2 0
PASD1 WILD-TYPE 19 6 4
'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S561.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
PASD1 MUTATED 3 2 0
PASD1 WILD-TYPE 13 11 4
'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S562.  Gene #59: 'PASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
PASD1 MUTATED 2 2 1
PASD1 WILD-TYPE 16 8 4
'RBM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S563.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
RBM45 MUTATED 4 0 0
RBM45 WILD-TYPE 17 17 3
'RBM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
RBM45 MUTATED 2 1 1
RBM45 WILD-TYPE 17 7 12
'RBM45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S565.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
RBM45 MUTATED 1 0 1 1 0
RBM45 WILD-TYPE 7 9 6 5 2
'RBM45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S566.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
RBM45 MUTATED 1 0 0 1 1
RBM45 WILD-TYPE 4 9 7 7 2
'RBM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S567.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
RBM45 MUTATED 1 2 1
RBM45 WILD-TYPE 15 10 5
'RBM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S568.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
RBM45 MUTATED 2 1 1
RBM45 WILD-TYPE 12 14 4
'RBM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S569.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
RBM45 MUTATED 1 2 1 0
RBM45 WILD-TYPE 11 9 7 3
'RBM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S570.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
RBM45 MUTATED 2 1 1
RBM45 WILD-TYPE 20 7 3
'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
RBM45 MUTATED 2 2 0
RBM45 WILD-TYPE 14 11 4
'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S572.  Gene #60: 'RBM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
RBM45 MUTATED 1 1 2
RBM45 WILD-TYPE 17 9 3
'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S573.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
POM121 MUTATED 3 1 0
POM121 WILD-TYPE 18 16 3
'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S574.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
POM121 MUTATED 2 0 2
POM121 WILD-TYPE 17 8 11
'POM121 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S575.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
POM121 MUTATED 1 1 1 1 0
POM121 WILD-TYPE 7 8 6 5 2
'POM121 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S576.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
POM121 MUTATED 1 1 0 1 1
POM121 WILD-TYPE 4 8 7 7 2
'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S577.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
POM121 MUTATED 2 1 1
POM121 WILD-TYPE 14 11 5
'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S578.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
POM121 MUTATED 2 1 1
POM121 WILD-TYPE 12 14 4
'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S579.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
POM121 MUTATED 1 1 1 1
POM121 WILD-TYPE 11 10 7 2
'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S580.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
POM121 MUTATED 3 0 1
POM121 WILD-TYPE 19 8 3
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S581.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
POM121 MUTATED 3 1 0
POM121 WILD-TYPE 13 12 4
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S582.  Gene #61: 'POM121 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
POM121 MUTATED 1 2 1
POM121 WILD-TYPE 17 8 4
'EME2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S583.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
EME2 MUTATED 3 0 0
EME2 WILD-TYPE 18 17 3
'EME2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S584.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EME2 MUTATED 1 0 2
EME2 WILD-TYPE 18 8 11
'EME2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S585.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
EME2 MUTATED 0 1 1 0 1
EME2 WILD-TYPE 8 8 6 6 1
'EME2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S586.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
EME2 MUTATED 0 1 1 1 0
EME2 WILD-TYPE 5 8 6 7 3
'EME2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S587.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
EME2 MUTATED 1 1 1
EME2 WILD-TYPE 15 11 5
'EME2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S588.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
EME2 MUTATED 1 1 1
EME2 WILD-TYPE 13 14 4
'EME2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S589.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
EME2 MUTATED 0 1 1 1
EME2 WILD-TYPE 12 10 7 2
'EME2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S590.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
EME2 MUTATED 3 0 0
EME2 WILD-TYPE 19 8 4
'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S591.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
EME2 MUTATED 2 1 0
EME2 WILD-TYPE 14 12 4
'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S592.  Gene #62: 'EME2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
EME2 MUTATED 2 1 0
EME2 WILD-TYPE 16 9 5
'CUL4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S593.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CUL4B MUTATED 3 0 0
CUL4B WILD-TYPE 18 17 3
'CUL4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S594.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CUL4B MUTATED 1 1 1
CUL4B WILD-TYPE 18 7 12
'CUL4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 1

Table S595.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CUL4B MUTATED 0 1 2
CUL4B WILD-TYPE 16 11 4

Figure S23.  Get High-res Image Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CUL4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S596.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CUL4B MUTATED 2 0 1
CUL4B WILD-TYPE 12 15 4
'CUL4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S597.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CUL4B MUTATED 0 2 0 1
CUL4B WILD-TYPE 12 9 8 2
'CUL4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S598.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CUL4B MUTATED 1 1 1
CUL4B WILD-TYPE 21 7 3
'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S599.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CUL4B MUTATED 1 2 0
CUL4B WILD-TYPE 15 11 4
'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S600.  Gene #63: 'CUL4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CUL4B MUTATED 0 2 1
CUL4B WILD-TYPE 18 8 4
'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S601.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
DIAPH3 MUTATED 2 2 0
DIAPH3 WILD-TYPE 19 15 3
'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S602.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
DIAPH3 MUTATED 3 0 1
DIAPH3 WILD-TYPE 16 8 12
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S603.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
DIAPH3 MUTATED 2 1 1
DIAPH3 WILD-TYPE 14 11 5
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S604.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
DIAPH3 MUTATED 1 2 1
DIAPH3 WILD-TYPE 13 13 4
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S605.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
DIAPH3 MUTATED 2 1 0 1
DIAPH3 WILD-TYPE 10 10 8 2
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S606.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
DIAPH3 MUTATED 4 0 0
DIAPH3 WILD-TYPE 18 8 4
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S607.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
DIAPH3 MUTATED 2 1 0
DIAPH3 WILD-TYPE 14 12 4
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608.  Gene #64: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
DIAPH3 MUTATED 2 1 0
DIAPH3 WILD-TYPE 16 9 5
'IFT46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S609.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
IFT46 MUTATED 4 0 0
IFT46 WILD-TYPE 17 17 3
'IFT46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S610.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
IFT46 MUTATED 2 1 1
IFT46 WILD-TYPE 17 7 12
'IFT46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S611.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
IFT46 MUTATED 0 0 2 1 1
IFT46 WILD-TYPE 8 9 5 5 1
'IFT46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S612.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
IFT46 MUTATED 0 0 1 2 1
IFT46 WILD-TYPE 5 9 6 6 2
'IFT46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S613.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
IFT46 MUTATED 1 1 1
IFT46 WILD-TYPE 15 11 5
'IFT46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S614.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
IFT46 MUTATED 1 1 1
IFT46 WILD-TYPE 13 14 4
'IFT46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S615.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
IFT46 MUTATED 1 1 0 1
IFT46 WILD-TYPE 11 10 8 2
'IFT46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S616.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
IFT46 MUTATED 3 0 0
IFT46 WILD-TYPE 19 8 4
'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S617.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
IFT46 MUTATED 2 1 0
IFT46 WILD-TYPE 14 12 4
'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S618.  Gene #65: 'IFT46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
IFT46 MUTATED 2 1 0
IFT46 WILD-TYPE 16 9 5
'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S619.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
OTUD4 MUTATED 3 1 1
OTUD4 WILD-TYPE 18 16 2
'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S620.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OTUD4 MUTATED 3 0 2
OTUD4 WILD-TYPE 16 8 11
'OTUD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S621.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
OTUD4 MUTATED 1 1 2 1 0
OTUD4 WILD-TYPE 7 8 5 5 2
'OTUD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S622.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
OTUD4 MUTATED 1 1 0 2 1
OTUD4 WILD-TYPE 4 8 7 6 2
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S623.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
OTUD4 MUTATED 3 2 0
OTUD4 WILD-TYPE 13 10 6
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S624.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
OTUD4 MUTATED 2 3 0
OTUD4 WILD-TYPE 12 12 5
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S625.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
OTUD4 MUTATED 1 2 2 0
OTUD4 WILD-TYPE 11 9 6 3
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S626.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
OTUD4 MUTATED 5 0 0
OTUD4 WILD-TYPE 17 8 4
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S627.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
OTUD4 MUTATED 3 1 1
OTUD4 WILD-TYPE 13 12 3
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S628.  Gene #66: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
OTUD4 MUTATED 4 1 0
OTUD4 WILD-TYPE 14 9 5
'GABBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S629.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
GABBR1 MUTATED 3 0 1
GABBR1 WILD-TYPE 18 17 2
'GABBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S630.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GABBR1 MUTATED 3 1 0
GABBR1 WILD-TYPE 16 7 13
'GABBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S631.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
GABBR1 MUTATED 0 1 2 1 0
GABBR1 WILD-TYPE 8 8 5 5 2
'GABBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S632.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
GABBR1 MUTATED 0 1 0 2 1
GABBR1 WILD-TYPE 5 8 7 6 2
'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
GABBR1 MUTATED 2 1 1
GABBR1 WILD-TYPE 14 11 5
'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S634.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
GABBR1 MUTATED 2 2 0
GABBR1 WILD-TYPE 12 13 5
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S635.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
GABBR1 MUTATED 2 2 0 0
GABBR1 WILD-TYPE 10 9 8 3
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S636.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
GABBR1 MUTATED 3 1 0
GABBR1 WILD-TYPE 19 7 4
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S637.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
GABBR1 MUTATED 3 1 0
GABBR1 WILD-TYPE 13 12 4
'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S638.  Gene #67: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
GABBR1 MUTATED 2 2 0
GABBR1 WILD-TYPE 16 8 5
'MYH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S639.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
MYH10 MUTATED 4 0 0
MYH10 WILD-TYPE 17 17 3
'MYH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S640.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
MYH10 MUTATED 1 1 2
MYH10 WILD-TYPE 18 7 11
'MYH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S641.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
MYH10 MUTATED 0 1 1 1 0
MYH10 WILD-TYPE 8 8 6 5 2
'MYH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S642.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
MYH10 MUTATED 0 1 1 1 0
MYH10 WILD-TYPE 5 8 6 7 3
'MYH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S643.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
MYH10 MUTATED 1 2 1
MYH10 WILD-TYPE 15 10 5
'MYH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S644.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
MYH10 MUTATED 3 0 1
MYH10 WILD-TYPE 11 15 4
'MYH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S645.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
MYH10 MUTATED 1 2 1 0
MYH10 WILD-TYPE 11 9 7 3
'MYH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S646.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
MYH10 MUTATED 2 1 1
MYH10 WILD-TYPE 20 7 3
'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S647.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
MYH10 MUTATED 2 2 0
MYH10 WILD-TYPE 14 11 4
'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S648.  Gene #68: 'MYH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
MYH10 MUTATED 1 1 2
MYH10 WILD-TYPE 17 9 3
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S649.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
ERF MUTATED 3 1 0
ERF WILD-TYPE 18 16 3
'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S650.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
ERF MUTATED 2 2 0
ERF WILD-TYPE 17 6 13
'ERF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S651.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
ERF MUTATED 1 1 1 0 0
ERF WILD-TYPE 7 8 6 6 2
'ERF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S652.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
ERF MUTATED 0 1 1 1 0
ERF WILD-TYPE 5 8 6 7 3
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S653.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
ERF MUTATED 1 2 1
ERF WILD-TYPE 15 10 5
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S654.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
ERF MUTATED 3 1 0
ERF WILD-TYPE 11 14 5
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S655.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
ERF MUTATED 1 3 0 0
ERF WILD-TYPE 11 8 8 3
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S656.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
ERF MUTATED 2 2 0
ERF WILD-TYPE 20 6 4
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
ERF MUTATED 2 2 0
ERF WILD-TYPE 14 11 4
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S658.  Gene #69: 'ERF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
ERF MUTATED 1 2 1
ERF WILD-TYPE 17 8 4
'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S659.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
OR10A7 MUTATED 3 1 0
OR10A7 WILD-TYPE 18 16 3
'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S660.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
OR10A7 MUTATED 2 1 1
OR10A7 WILD-TYPE 17 7 12
'OR10A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S661.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
OR10A7 MUTATED 0 2 1 1 0
OR10A7 WILD-TYPE 8 7 6 5 2
'OR10A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S662.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
OR10A7 MUTATED 0 2 0 1 1
OR10A7 WILD-TYPE 5 7 7 7 2
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S663.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 14 11 6
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S664.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 12 14 5
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S665.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
OR10A7 MUTATED 2 1 0 0
OR10A7 WILD-TYPE 10 10 8 3
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 20 7 4
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S667.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
OR10A7 MUTATED 3 0 0
OR10A7 WILD-TYPE 13 13 4
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S668.  Gene #70: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
OR10A7 MUTATED 2 1 0
OR10A7 WILD-TYPE 16 9 5
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S669.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
BRDT MUTATED 4 0 0
BRDT WILD-TYPE 17 17 3
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S670.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
BRDT MUTATED 2 1 1
BRDT WILD-TYPE 17 7 12
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S671.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
BRDT MUTATED 1 2 1
BRDT WILD-TYPE 15 10 5
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S672.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
BRDT MUTATED 2 1 1
BRDT WILD-TYPE 12 14 4
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S673.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
BRDT MUTATED 1 2 0 1
BRDT WILD-TYPE 11 9 8 2
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S674.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
BRDT MUTATED 2 1 1
BRDT WILD-TYPE 20 7 3
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S675.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
BRDT MUTATED 2 2 0
BRDT WILD-TYPE 14 11 4
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S676.  Gene #71: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
BRDT MUTATED 1 1 2
BRDT WILD-TYPE 17 9 3
'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S677.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
CDHR5 MUTATED 2 2 0
CDHR5 WILD-TYPE 19 15 3
'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S678.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
CDHR5 MUTATED 2 1 1
CDHR5 WILD-TYPE 17 7 12
'CDHR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S679.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
CDHR5 MUTATED 3 1 0 0 0
CDHR5 WILD-TYPE 5 8 7 6 2
'CDHR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S680.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
CDHR5 MUTATED 2 1 1 0 0
CDHR5 WILD-TYPE 3 8 6 8 3
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 1

Table S681.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
CDHR5 MUTATED 0 2 2
CDHR5 WILD-TYPE 16 10 4

Figure S24.  Get High-res Image Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S682.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
CDHR5 MUTATED 3 0 1
CDHR5 WILD-TYPE 11 15 4
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S683.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
CDHR5 MUTATED 1 2 0 1
CDHR5 WILD-TYPE 11 9 8 2
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S684.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
CDHR5 MUTATED 2 1 1
CDHR5 WILD-TYPE 20 7 3
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 1

Table S685.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
CDHR5 MUTATED 0 2 2
CDHR5 WILD-TYPE 16 11 2

Figure S25.  Get High-res Image Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S686.  Gene #72: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
CDHR5 MUTATED 2 1 1
CDHR5 WILD-TYPE 16 9 4
'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S687.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
EPS8L3 MUTATED 3 0 0
EPS8L3 WILD-TYPE 18 17 3
'EPS8L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S688.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
EPS8L3 MUTATED 1 0 2
EPS8L3 WILD-TYPE 18 8 11
'EPS8L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S689.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 8 9 7 6 2
EPS8L3 MUTATED 0 2 1 0 0
EPS8L3 WILD-TYPE 8 7 6 6 2
'EPS8L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S690.  Gene #73: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 5 9 7 8 3
EPS8L3 MUTATED 0 2 0 1 0
EPS8L3 WILD-TYPE 5 7 7 7 3
'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S691.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
GPR25 MUTATED 1 2 0
GPR25 WILD-TYPE 20 15 3
'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S692.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
GPR25 MUTATED 2 1 0
GPR25 WILD-TYPE 17 7 13
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S693.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
GPR25 MUTATED 1 2 0
GPR25 WILD-TYPE 15 10 6
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S694.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 14 15 5
GPR25 MUTATED 3 0 0
GPR25 WILD-TYPE 11 15 5
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S695.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 11 8 3
GPR25 MUTATED 1 2 0 0
GPR25 WILD-TYPE 11 9 8 3
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S696.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 22 8 4
GPR25 MUTATED 2 1 0
GPR25 WILD-TYPE 20 7 4
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S697.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 13 4
GPR25 MUTATED 3 0 0
GPR25 WILD-TYPE 13 13 4
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S698.  Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 10 5
GPR25 MUTATED 0 3 0
GPR25 WILD-TYPE 18 7 5

Figure S26.  Get High-res Image Gene #74: 'GPR25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S699.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 17 3
PPARGC1B MUTATED 2 0 1
PPARGC1B WILD-TYPE 19 17 2
'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S700.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 19 8 13
PPARGC1B MUTATED 1 1 1
PPARGC1B WILD-TYPE 18 7 12
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S701.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 16 12 6
PPARGC1B MUTATED 0 2 1
PPARGC1B WILD-TYPE 16 10 5
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S702.  Gene #75: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2