Association of mutation, copy number alteration, and subtype markers with pathways
Rectum Adenocarcinoma (Primary solid tumor)
17 October 2014  |  analyses__2014_10_17
Maintainer Information
Citation Information
doi:10.7908/C1QC02DK
Maintained by Spring Yingchun Liu (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Association of mutation, copy number alteration, and subtype markers with pathways. Broad Institute of MIT and Harvard. doi:10.7908/C1QC02DK
- Overview
+ Introduction
- Summary

There are 11 genes with significant mutation (Q value <= 0.1) and 443 genes with significant copy number alteration (Q value <= 0.25). The identified marker genes (Q value <= 0.01 or within top 2000) are 2000 for subtype 1, 2000 for subtype 2, 2000 for subtype 3, 2000 for subtype 4. Pathways significantly enriched with these genes (Q value <= 0.01) are identified :

11 pathways significantly enriched with genes with copy number alteration or mutation.

0 pathways significantly enriched with marker genes of gene expression subtype 1

0 pathways significantly enriched with marker genes of gene expression subtype 2

0 pathways significantly enriched with marker genes of gene expression subtype 3

0 pathways significantly enriched with marker genes of gene expression subtype 4

- Results
+ The top five pathways enriched with genes with copy number alteration or mutation
+ The top five pathways enriched with marker genes of gene expression subtype 1
+ The top five pathways enriched with marker genes of gene expression subtype 2
+ The top five pathways enriched with marker genes of gene expression subtype 3
+ The top five pathways enriched with marker genes of gene expression subtype 4
+ Methods & Data
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