[1] "ofn"        "-oTBLCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BLCA-TP/15111049/BLCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/15082908/transformed.cor.cli.txt"

nPatients in clinical file=412, in cluster file=408, common to both=408
[1]  69 408
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                          101                           307 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                          101                           307 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          202                           206 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          202                           206 
[1] "AMP PEAK  3(1Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                          216                           192 
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                          216                           192 
[1] "AMP PEAK  4(2P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE 
                          150                           258 
  AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE 
                          150                           258 
[1] "AMP PEAK  5(3P25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE 
                          190                           218 
  AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE 
                          190                           218 
[1] "AMP PEAK  6(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           218                            190 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           218                            190 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           73                           335 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           73                           335 
[1] "AMP PEAK  8(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                           62                           346 
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                           62                           346 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           205                            203 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           205                            203 
[1] "AMP PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          170                           238 
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          170                           238 
[1] "AMP PEAK 11(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                         35                         373 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                         35                         373 
[1] "AMP PEAK 12(6Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE 
                           46                           362 
  AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE 
                           46                           362 
[1] "AMP PEAK 13(7P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE 
                          201                           207 
  AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE 
                          201                           207 
[1] "AMP PEAK 14(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE 
                          190                           218 
  AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE 
                          190                           218 
[1] "AMP PEAK 15(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE 
                           123                            285 
  AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE 
                           123                            285 
[1] "AMP PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE 
                           140                            268 
  AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE 
                           140                            268 
[1] "AMP PEAK 17(8Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE 
                          264                           144 
  AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE 
                          264                           144 
[1] "AMP PEAK 18(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE 
                           88                           320 
  AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE 
                           88                           320 
[1] "AMP PEAK 19(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE 
                         182                          226 
  AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE 
                         182                          226 
[1] "AMP PEAK 20(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE 
                          51                          357 
  AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE 
                          51                          357 
[1] "AMP PEAK 21(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE 
                           135                            273 
  AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE 
                           135                            273 
[1] "AMP PEAK 22(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE 
                            71                            337 
  AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE 
                            71                            337 
[1] "AMP PEAK 23(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE 
                           131                            277 
  AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE 
                           131                            277 
[1] "AMP PEAK 24(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE 
                         118                          290 
  AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE 
                         118                          290 
[1] "AMP PEAK 25(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE 
                           128                            280 
  AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE 
                           128                            280 
[1] "AMP PEAK 26(16P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE 
                            87                            321 
  AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE 
                            87                            321 
[1] "AMP PEAK 27(16Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE 
                           108                            300 
  AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE 
                           108                            300 
[1] "AMP PEAK 28(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE 
                         166                          242 
  AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE 
                         166                          242 
[1] "AMP PEAK 29(17Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE 
                           194                            214 
  AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE 
                           194                            214 
[1] "AMP PEAK 30(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         164                          244 
  AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE 
                         164                          244 
[1] "AMP PEAK 31(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE 
                            154                             254 
  AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE 
                            154                             254 
[1] "AMP PEAK 32(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE 
                            262                             146 
  AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE 
                            262                             146 
[1] "AMP PEAK 33(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE 
                            87                            321 
  AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE 
                            87                            321 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            91                            317 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            91                            317 
[1] "DEL PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                           71                           337 
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                           71                           337 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                          134                           274 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                          134                           274 
[1] "DEL PEAK  4(2Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                        174                         234 
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                        174                         234 
[1] "DEL PEAK  5(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                          208                           200 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                          208                           200 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                          117                           291 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                          117                           291 
[1] "DEL PEAK  7(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          162                           246 
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          162                           246 
[1] "DEL PEAK  8(4Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE 
                          177                           231 
  DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE 
                          177                           231 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          202                           206 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          202                           206 
[1] "DEL PEAK 10(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                          106                           302 
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                          106                           302 
[1] "DEL PEAK 11(6Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE 
                        190                         218 
  DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE 
                        190                         218 
[1] "DEL PEAK 12(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        190                         218 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        190                         218 
[1] "DEL PEAK 13(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           60                           348 
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           60                           348 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          242                           166 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          242                           166 
[1] "DEL PEAK 15(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          252                           156 
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          252                           156 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        178                         230 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        178                         230 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          239                           169 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          239                           169 
[1] "DEL PEAK 18(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE 
                           178                            230 
  DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE 
                           178                            230 
[1] "DEL PEAK 19(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE 
                             74                             334 
  DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE 
                             74                             334 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            166                             242 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            166                             242 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           211                            197 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           211                            197 
[1] "DEL PEAK 22(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE 
                           155                            253 
  DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE 
                           155                            253 
[1] "DEL PEAK 23(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         143                          265 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         143                          265 
[1] "DEL PEAK 24(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                            68                            340 
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                            68                            340 
[1] "DEL PEAK 25(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             88                             320 
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             88                             320 
[1] "DEL PEAK 26(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           156                            252 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           156                            252 
[1] "DEL PEAK 27(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                           137                            271 
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                           137                            271 
[1] "DEL PEAK 28(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE 
                           160                            248 
  DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE 
                           160                            248 
[1] "DEL PEAK 29(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE 
                           174                            234 
  DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE 
                           174                            234 
[1] "DEL PEAK 30(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           119                            289 
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           119                            289 
[1] "DEL PEAK 31(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         209                          199 
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         209                          199 
[1] "DEL PEAK 32(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         180                          228 
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         180                          228 
[1] "DEL PEAK 33(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           146                            262 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           146                            262 
[1] "DEL PEAK 34(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE 
                            187                             221 
  DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE 
                            187                             221 
[1] "DEL PEAK 35(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE 
                           92                           316 
  DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE 
                           92                           316 
[1] "DEL PEAK 36(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE 
                            84                            324 
  DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE 
                            84                            324 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 408 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 408 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       15     67      8     11
  AMP PEAK  1(1P34.2) WILD-TYPE    154     73     51     29
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          15                           154
  CLUS_2                          67                            73
  CLUS_3                           8                            51
  CLUS_4                          11                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       29     46     10     16
  AMP PEAK  1(1P34.2) WILD-TYPE    109     70     59     69
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          29                           109
  CLUS_2                          46                            70
  CLUS_3                          10                            59
  CLUS_4                          16                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED       11      9      9      0     10
  AMP PEAK  1(1P34.2) WILD-TYPE     26     20     25      5      9
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                           9                            20
  CLUS_3                           9                            25
  CLUS_4                           0                             5
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       10     15      8      6
  AMP PEAK  1(1P34.2) WILD-TYPE     32     23     18     12
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                          15                            23
  CLUS_3                           8                            18
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       28     44     29
  AMP PEAK  1(1P34.2) WILD-TYPE     88    136     79
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          28                            88
  CLUS_2                          44                           136
  CLUS_3                          29                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       35     20     46
  AMP PEAK  1(1P34.2) WILD-TYPE     83     92    128
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          35                            83
  CLUS_2                          20                            92
  CLUS_3                          46                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       32     32     37
  AMP PEAK  1(1P34.2) WILD-TYPE     88     64    152
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          32                            88
  CLUS_2                          32                            64
  CLUS_3                          37                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED       22     30     12     19     18
  AMP PEAK  1(1P34.2) WILD-TYPE     67     69     81     51     36
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          22                            67
  CLUS_2                          30                            69
  CLUS_3                          12                            81
  CLUS_4                          19                            51
  CLUS_5                          18                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       24     16     29     31
  AMP PEAK  1(1P34.2) WILD-TYPE     74     27    105     88
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          24                            74
  CLUS_2                          16                            27
  CLUS_3                          29                           105
  CLUS_4                          31                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED       19     17     26     19      1     18
  AMP PEAK  1(1P34.2) WILD-TYPE     55     29     67     47     30     66
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          19                            55
  CLUS_2                          17                            29
  CLUS_3                          26                            67
  CLUS_4                          19                            47
  CLUS_5                           1                            30
  CLUS_6                          18                            66
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       43    108     32     19
  AMP PEAK  2(1Q21.3) WILD-TYPE    126     32     27     21
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          43                           126
  CLUS_2                         108                            32
  CLUS_3                          32                            27
  CLUS_4                          19                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       58     77     27     40
  AMP PEAK  2(1Q21.3) WILD-TYPE     80     39     42     45
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          58                            80
  CLUS_2                          77                            39
  CLUS_3                          27                            42
  CLUS_4                          40                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       20     15     22      1      9
  AMP PEAK  2(1Q21.3) WILD-TYPE     17     14     12      4     10
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                          15                            14
  CLUS_3                          22                            12
  CLUS_4                           1                             4
  CLUS_5                           9                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       22     21     16      8
  AMP PEAK  2(1Q21.3) WILD-TYPE     20     17     10     10
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          22                            20
  CLUS_2                          21                            17
  CLUS_3                          16                            10
  CLUS_4                           8                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       63     92     46
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     88     62
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          63                            53
  CLUS_2                          92                            88
  CLUS_3                          46                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       68     50     83
  AMP PEAK  2(1Q21.3) WILD-TYPE     50     62     91
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          68                            50
  CLUS_2                          50                            62
  CLUS_3                          83                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       55     56     90
  AMP PEAK  2(1Q21.3) WILD-TYPE     65     40     99
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          55                            65
  CLUS_2                          56                            40
  CLUS_3                          90                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       41     56     36     42     26
  AMP PEAK  2(1Q21.3) WILD-TYPE     48     43     57     28     28
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          41                            48
  CLUS_2                          56                            43
  CLUS_3                          36                            57
  CLUS_4                          42                            28
  CLUS_5                          26                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       45     25     67     59
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     18     67     60
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          45                            53
  CLUS_2                          25                            18
  CLUS_3                          67                            67
  CLUS_4                          59                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       32     26     58     37      9     34
  AMP PEAK  2(1Q21.3) WILD-TYPE     42     20     35     29     22     50
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          32                            42
  CLUS_2                          26                            20
  CLUS_3                          58                            35
  CLUS_4                          37                            29
  CLUS_5                           9                            22
  CLUS_6                          34                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q23.3) MUTATED       54    116     26     20
  AMP PEAK  3(1Q23.3) WILD-TYPE    115     24     33     20
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          54                           115
  CLUS_2                         116                            24
  CLUS_3                          26                            33
  CLUS_4                          20                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q23.3) MUTATED       68     76     30     42
  AMP PEAK  3(1Q23.3) WILD-TYPE     70     40     39     43
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          68                            70
  CLUS_2                          76                            40
  CLUS_3                          30                            39
  CLUS_4                          42                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q23.3) MUTATED       22     16     21      1     11
  AMP PEAK  3(1Q23.3) WILD-TYPE     15     13     13      4      8
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          22                            15
  CLUS_2                          16                            13
  CLUS_3                          21                            13
  CLUS_4                           1                             4
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q23.3) MUTATED       22     22     16     11
  AMP PEAK  3(1Q23.3) WILD-TYPE     20     16     10      7
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          22                            20
  CLUS_2                          22                            16
  CLUS_3                          16                            10
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q23.3) MUTATED       64    102     49
  AMP PEAK  3(1Q23.3) WILD-TYPE     52     78     59
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          64                            52
  CLUS_2                         102                            78
  CLUS_3                          49                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q23.3) MUTATED       75     53     87
  AMP PEAK  3(1Q23.3) WILD-TYPE     43     59     87
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          75                            43
  CLUS_2                          53                            59
  CLUS_3                          87                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q23.3) MUTATED       58     66     91
  AMP PEAK  3(1Q23.3) WILD-TYPE     62     30     98
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          58                            62
  CLUS_2                          66                            30
  CLUS_3                          91                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q23.3) MUTATED       42     64     37     44     28
  AMP PEAK  3(1Q23.3) WILD-TYPE     47     35     56     26     26
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          42                            47
  CLUS_2                          64                            35
  CLUS_3                          37                            56
  CLUS_4                          44                            26
  CLUS_5                          28                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q23.3) MUTATED       46     31     68     65
  AMP PEAK  3(1Q23.3) WILD-TYPE     52     12     66     54
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          46                            52
  CLUS_2                          31                            12
  CLUS_3                          68                            66
  CLUS_4                          65                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q23.3) MUTATED       36     33     58     37     10     36
  AMP PEAK  3(1Q23.3) WILD-TYPE     38     13     35     29     21     48
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  CLUS_1                          36                            38
  CLUS_2                          33                            13
  CLUS_3                          58                            35
  CLUS_4                          37                            29
  CLUS_5                          10                            21
  CLUS_6                          36                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P25.1) MUTATED       28     86     14     22
  AMP PEAK  4(2P25.1) WILD-TYPE    141     54     45     18
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          28                           141
  CLUS_2                          86                            54
  CLUS_3                          14                            45
  CLUS_4                          22                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P25.1) MUTATED       38     73     15     24
  AMP PEAK  4(2P25.1) WILD-TYPE    100     43     54     61
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          38                           100
  CLUS_2                          73                            43
  CLUS_3                          15                            54
  CLUS_4                          24                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P25.1) MUTATED       17     10     14      2      7
  AMP PEAK  4(2P25.1) WILD-TYPE     20     19     20      3     12
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          17                            20
  CLUS_2                          10                            19
  CLUS_3                          14                            20
  CLUS_4                           2                             3
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P25.1) MUTATED       19     15     10      6
  AMP PEAK  4(2P25.1) WILD-TYPE     23     23     16     12
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                          15                            23
  CLUS_3                          10                            16
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P25.1) MUTATED       45     73     31
  AMP PEAK  4(2P25.1) WILD-TYPE     71    107     77
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          45                            71
  CLUS_2                          73                           107
  CLUS_3                          31                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P25.1) MUTATED       63     37     49
  AMP PEAK  4(2P25.1) WILD-TYPE     55     75    125
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          63                            55
  CLUS_2                          37                            75
  CLUS_3                          49                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P25.1) MUTATED       36     44     68
  AMP PEAK  4(2P25.1) WILD-TYPE     84     52    121
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          36                            84
  CLUS_2                          44                            52
  CLUS_3                          68                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P25.1) MUTATED       30     42     24     34     18
  AMP PEAK  4(2P25.1) WILD-TYPE     59     57     69     36     36
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          30                            59
  CLUS_2                          42                            57
  CLUS_3                          24                            69
  CLUS_4                          34                            36
  CLUS_5                          18                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P25.1) MUTATED       27     22     51     46
  AMP PEAK  4(2P25.1) WILD-TYPE     71     21     83     73
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          27                            71
  CLUS_2                          22                            21
  CLUS_3                          51                            83
  CLUS_4                          46                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P25.1) MUTATED       26     24     46     25      3     22
  AMP PEAK  4(2P25.1) WILD-TYPE     48     22     47     41     28     62
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P25.1) MUTATED AMP PEAK  4(2P25.1) WILD-TYPE
  CLUS_1                          26                            48
  CLUS_2                          24                            22
  CLUS_3                          46                            47
  CLUS_4                          25                            41
  CLUS_5                           3                            28
  CLUS_6                          22                            62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P25.2) MUTATED       41    102     22     25
  AMP PEAK  5(3P25.2) WILD-TYPE    128     38     37     15
D5V1, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          41                           128
  CLUS_2                         102                            38
  CLUS_3                          22                            37
  CLUS_4                          25                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P25.2) MUTATED       46     82     30     32
  AMP PEAK  5(3P25.2) WILD-TYPE     92     34     39     53
D5V2, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          46                            92
  CLUS_2                          82                            34
  CLUS_3                          30                            39
  CLUS_4                          32                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P25.2) MUTATED       24     11     13      1     10
  AMP PEAK  5(3P25.2) WILD-TYPE     13     18     21      4      9
D5V3, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          24                            13
  CLUS_2                          11                            18
  CLUS_3                          13                            21
  CLUS_4                           1                             4
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P25.2) MUTATED       28     16      7      8
  AMP PEAK  5(3P25.2) WILD-TYPE     14     22     19     10
D5V4, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          28                            14
  CLUS_2                          16                            22
  CLUS_3                           7                            19
  CLUS_4                           8                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P25.2) MUTATED       55    108     25
  AMP PEAK  5(3P25.2) WILD-TYPE     61     72     83
D5V5, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          55                            61
  CLUS_2                         108                            72
  CLUS_3                          25                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P25.2) MUTATED       78     60     50
  AMP PEAK  5(3P25.2) WILD-TYPE     40     52    124
D5V6, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          78                            40
  CLUS_2                          60                            52
  CLUS_3                          50                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P25.2) MUTATED       44     62     83
  AMP PEAK  5(3P25.2) WILD-TYPE     76     34    106
D5V7, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          44                            76
  CLUS_2                          62                            34
  CLUS_3                          83                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3P25.2) MUTATED       27     59     33     42     28
  AMP PEAK  5(3P25.2) WILD-TYPE     62     40     60     28     26
D5V8, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          27                            62
  CLUS_2                          59                            40
  CLUS_3                          33                            60
  CLUS_4                          42                            28
  CLUS_5                          28                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P25.2) MUTATED       30     36     66     53
  AMP PEAK  5(3P25.2) WILD-TYPE     68      7     68     66
D5V9, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          30                            68
  CLUS_2                          36                             7
  CLUS_3                          66                            68
  CLUS_4                          53                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P25.2) MUTATED       36     34     63     23      2     27
  AMP PEAK  5(3P25.2) WILD-TYPE     38     12     30     43     29     57
D5V10, multiclass
        clus
vv       AMP PEAK  5(3P25.2) MUTATED AMP PEAK  5(3P25.2) WILD-TYPE
  CLUS_1                          36                            38
  CLUS_2                          34                            12
  CLUS_3                          63                            30
  CLUS_4                          23                            43
  CLUS_5                           2                            29
  CLUS_6                          27                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       62    100     28     28
  AMP PEAK  6(3Q26.33) WILD-TYPE    107     40     31     12
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           62                            107
  CLUS_2                          100                             40
  CLUS_3                           28                             31
  CLUS_4                           28                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       72     67     34     45
  AMP PEAK  6(3Q26.33) WILD-TYPE     66     49     35     40
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           72                             66
  CLUS_2                           67                             49
  CLUS_3                           34                             35
  CLUS_4                           45                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.33) MUTATED       21     13     23      2      9
  AMP PEAK  6(3Q26.33) WILD-TYPE     16     16     11      3     10
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           21                             16
  CLUS_2                           13                             16
  CLUS_3                           23                             11
  CLUS_4                            2                              3
  CLUS_5                            9                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       22     16     19     11
  AMP PEAK  6(3Q26.33) WILD-TYPE     20     22      7      7
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           22                             20
  CLUS_2                           16                             22
  CLUS_3                           19                              7
  CLUS_4                           11                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       61     93     63
  AMP PEAK  6(3Q26.33) WILD-TYPE     55     87     45
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           61                             55
  CLUS_2                           93                             87
  CLUS_3                           63                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       74     50     93
  AMP PEAK  6(3Q26.33) WILD-TYPE     44     62     81
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           74                             44
  CLUS_2                           50                             62
  CLUS_3                           93                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       62     56     98
  AMP PEAK  6(3Q26.33) WILD-TYPE     58     40     91
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           62                             58
  CLUS_2                           56                             40
  CLUS_3                           98                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.33) MUTATED       50     56     34     44     32
  AMP PEAK  6(3Q26.33) WILD-TYPE     39     43     59     26     22
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           50                             39
  CLUS_2                           56                             43
  CLUS_3                           34                             59
  CLUS_4                           44                             26
  CLUS_5                           32                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       54     29     65     62
  AMP PEAK  6(3Q26.33) WILD-TYPE     44     14     69     57
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           54                             44
  CLUS_2                           29                             14
  CLUS_3                           65                             69
  CLUS_4                           62                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.33) MUTATED       36     30     58     42      4     40
  AMP PEAK  6(3Q26.33) WILD-TYPE     38     16     35     24     27     44
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           36                             38
  CLUS_2                           30                             16
  CLUS_3                           58                             35
  CLUS_4                           42                             24
  CLUS_5                            4                             27
  CLUS_6                           40                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       23     34      7      9
  AMP PEAK  7(4P16.3) WILD-TYPE    146    106     52     31
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          23                           146
  CLUS_2                          34                           106
  CLUS_3                           7                            52
  CLUS_4                           9                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       15     29     11     18
  AMP PEAK  7(4P16.3) WILD-TYPE    123     87     58     67
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          15                           123
  CLUS_2                          29                            87
  CLUS_3                          11                            58
  CLUS_4                          18                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED       12      2      8      0      2
  AMP PEAK  7(4P16.3) WILD-TYPE     25     27     26      5     17
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                           2                            27
  CLUS_3                           8                            26
  CLUS_4                           0                             5
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       13      3      6      2
  AMP PEAK  7(4P16.3) WILD-TYPE     29     35     20     16
D7V4, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                           3                            35
  CLUS_3                           6                            20
  CLUS_4                           2                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       10     47     15
  AMP PEAK  7(4P16.3) WILD-TYPE    106    133     93
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          10                           106
  CLUS_2                          47                           133
  CLUS_3                          15                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       20     34     18
  AMP PEAK  7(4P16.3) WILD-TYPE     98     78    156
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          20                            98
  CLUS_2                          34                            78
  CLUS_3                          18                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED        6     27     40
  AMP PEAK  7(4P16.3) WILD-TYPE    114     69    149
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           6                           114
  CLUS_2                          27                            69
  CLUS_3                          40                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED       13     22     18     17      3
  AMP PEAK  7(4P16.3) WILD-TYPE     76     77     75     53     51
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                            76
  CLUS_2                          22                            77
  CLUS_3                          18                            75
  CLUS_4                          17                            53
  CLUS_5                           3                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       15      7     34     15
  AMP PEAK  7(4P16.3) WILD-TYPE     83     36    100    104
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          15                            83
  CLUS_2                           7                            36
  CLUS_3                          34                           100
  CLUS_4                          15                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        5      9     22     15      8     12
  AMP PEAK  7(4P16.3) WILD-TYPE     69     37     71     51     23     72
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                           9                            37
  CLUS_3                          22                            71
  CLUS_4                          15                            51
  CLUS_5                           8                            23
  CLUS_6                          12                            72
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       11     40      4      7
  AMP PEAK  8(4Q13.3) WILD-TYPE    158    100     55     33
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          11                           158
  CLUS_2                          40                           100
  CLUS_3                           4                            55
  CLUS_4                           7                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       17     28      5     12
  AMP PEAK  8(4Q13.3) WILD-TYPE    121     88     64     73
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          17                           121
  CLUS_2                          28                            88
  CLUS_3                           5                            64
  CLUS_4                          12                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q13.3) MUTATED        6      2      7      0      3
  AMP PEAK  8(4Q13.3) WILD-TYPE     31     27     27      5     16
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           2                            27
  CLUS_3                           7                            27
  CLUS_4                           0                             5
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED        6      4      4      4
  AMP PEAK  8(4Q13.3) WILD-TYPE     36     34     22     14
D8V4, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                           4                            34
  CLUS_3                           4                            22
  CLUS_4                           4                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       11     33     18
  AMP PEAK  8(4Q13.3) WILD-TYPE    105    147     90
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          11                           105
  CLUS_2                          33                           147
  CLUS_3                          18                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       18     21     23
  AMP PEAK  8(4Q13.3) WILD-TYPE    100     91    151
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          18                           100
  CLUS_2                          21                            91
  CLUS_3                          23                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED        9     20     33
  AMP PEAK  8(4Q13.3) WILD-TYPE    111     76    156
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           9                           111
  CLUS_2                          20                            76
  CLUS_3                          33                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q13.3) MUTATED       11     19      9     17      6
  AMP PEAK  8(4Q13.3) WILD-TYPE     78     80     84     53     48
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          11                            78
  CLUS_2                          19                            80
  CLUS_3                           9                            84
  CLUS_4                          17                            53
  CLUS_5                           6                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       12      6     30     13
  AMP PEAK  8(4Q13.3) WILD-TYPE     86     37    104    106
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          12                            86
  CLUS_2                           6                            37
  CLUS_3                          30                           104
  CLUS_4                          13                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q13.3) MUTATED        6      7     22     14      3      9
  AMP PEAK  8(4Q13.3) WILD-TYPE     68     39     71     52     28     75
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           6                            68
  CLUS_2                           7                            39
  CLUS_3                          22                            71
  CLUS_4                          14                            52
  CLUS_5                           3                            28
  CLUS_6                           9                            75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       42     96     42     25
  AMP PEAK  9(5P15.33) WILD-TYPE    127     44     17     15
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           42                            127
  CLUS_2                           96                             44
  CLUS_3                           42                             17
  CLUS_4                           25                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       75     65     22     43
  AMP PEAK  9(5P15.33) WILD-TYPE     63     51     47     42
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           75                             63
  CLUS_2                           65                             51
  CLUS_3                           22                             47
  CLUS_4                           43                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       17      8     18      0     12
  AMP PEAK  9(5P15.33) WILD-TYPE     20     21     16      5      7
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           17                             20
  CLUS_2                            8                             21
  CLUS_3                           18                             16
  CLUS_4                            0                              5
  CLUS_5                           12                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       19     14     10     12
  AMP PEAK  9(5P15.33) WILD-TYPE     23     24     16      6
D9V4, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           14                             24
  CLUS_3                           10                             16
  CLUS_4                           12                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       56     86     60
  AMP PEAK  9(5P15.33) WILD-TYPE     60     94     48
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           56                             60
  CLUS_2                           86                             94
  CLUS_3                           60                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       50     51    101
  AMP PEAK  9(5P15.33) WILD-TYPE     68     61     73
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           50                             68
  CLUS_2                           51                             61
  CLUS_3                          101                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       61     53     90
  AMP PEAK  9(5P15.33) WILD-TYPE     59     43     99
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           61                             59
  CLUS_2                           53                             43
  CLUS_3                           90                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       43     62     27     41     31
  AMP PEAK  9(5P15.33) WILD-TYPE     46     37     66     29     23
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           43                             46
  CLUS_2                           62                             37
  CLUS_3                           27                             66
  CLUS_4                           41                             29
  CLUS_5                           31                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       58     21     64     58
  AMP PEAK  9(5P15.33) WILD-TYPE     40     22     70     61
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           58                             40
  CLUS_2                           21                             22
  CLUS_3                           64                             70
  CLUS_4                           58                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED       31     26     50     37      6     51
  AMP PEAK  9(5P15.33) WILD-TYPE     43     20     43     29     25     33
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           31                             43
  CLUS_2                           26                             20
  CLUS_3                           50                             43
  CLUS_4                           37                             29
  CLUS_5                            6                             25
  CLUS_6                           51                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       25     94     36     15
  AMP PEAK 10(6P22.3) WILD-TYPE    144     46     23     25
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          25                           144
  CLUS_2                          94                            46
  CLUS_3                          36                            23
  CLUS_4                          15                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       53     73     20     24
  AMP PEAK 10(6P22.3) WILD-TYPE     85     43     49     61
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          53                            85
  CLUS_2                          73                            43
  CLUS_3                          20                            49
  CLUS_4                          24                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P22.3) MUTATED       16      9     12      0      9
  AMP PEAK 10(6P22.3) WILD-TYPE     21     20     22      5     10
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          16                            21
  CLUS_2                           9                            20
  CLUS_3                          12                            22
  CLUS_4                           0                             5
  CLUS_5                           9                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       14     13      9     10
  AMP PEAK 10(6P22.3) WILD-TYPE     28     25     17      8
D10V4, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                          13                            25
  CLUS_3                           9                            17
  CLUS_4                          10                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       46     82     39
  AMP PEAK 10(6P22.3) WILD-TYPE     70     98     69
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          46                            70
  CLUS_2                          82                            98
  CLUS_3                          39                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       53     44     70
  AMP PEAK 10(6P22.3) WILD-TYPE     65     68    104
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          53                            65
  CLUS_2                          44                            68
  CLUS_3                          70                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       40     44     85
  AMP PEAK 10(6P22.3) WILD-TYPE     80     52    104
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          40                            80
  CLUS_2                          44                            52
  CLUS_3                          85                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P22.3) MUTATED       35     43     32     36     23
  AMP PEAK 10(6P22.3) WILD-TYPE     54     56     61     34     31
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          35                            54
  CLUS_2                          43                            56
  CLUS_3                          32                            61
  CLUS_4                          36                            34
  CLUS_5                          23                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       46     16     63     43
  AMP PEAK 10(6P22.3) WILD-TYPE     52     27     71     76
D10V9, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          46                            52
  CLUS_2                          16                            27
  CLUS_3                          63                            71
  CLUS_4                          43                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P22.3) MUTATED       28     18     58     20      4     40
  AMP PEAK 10(6P22.3) WILD-TYPE     46     28     35     46     27     44
D10V10, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          28                            46
  CLUS_2                          18                            28
  CLUS_3                          58                            35
  CLUS_4                          20                            46
  CLUS_5                           4                            27
  CLUS_6                          40                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6Q21) MUTATED        9     20      6      0
  AMP PEAK 11(6Q21) WILD-TYPE    160    120     53     40
D11V1, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         9                         160
  CLUS_2                        20                         120
  CLUS_3                         6                          53
  CLUS_4                         0                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6Q21) MUTATED        7     17      6      5
  AMP PEAK 11(6Q21) WILD-TYPE    131     99     63     80
D11V2, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         7                         131
  CLUS_2                        17                          99
  CLUS_3                         6                          63
  CLUS_4                         5                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q21) MUTATED        7      1      3      0      2
  AMP PEAK 11(6Q21) WILD-TYPE     30     28     31      5     17
D11V3, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         7                          30
  CLUS_2                         1                          28
  CLUS_3                         3                          31
  CLUS_4                         0                           5
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6Q21) MUTATED        4      1      5      3
  AMP PEAK 11(6Q21) WILD-TYPE     38     37     21     15
D11V4, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         4                          38
  CLUS_2                         1                          37
  CLUS_3                         5                          21
  CLUS_4                         3                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       10     19      5
  AMP PEAK 11(6Q21) WILD-TYPE    106    161    103
D11V5, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        10                         106
  CLUS_2                        19                         161
  CLUS_3                         5                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       16      8     10
  AMP PEAK 11(6Q21) WILD-TYPE    102    104    164
D11V6, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        16                         102
  CLUS_2                         8                         104
  CLUS_3                        10                         164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED        9      8     18
  AMP PEAK 11(6Q21) WILD-TYPE    111     88    171
D11V7, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         9                         111
  CLUS_2                         8                          88
  CLUS_3                        18                         171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q21) MUTATED        8      8      9      7      3
  AMP PEAK 11(6Q21) WILD-TYPE     81     91     84     63     51
D11V8, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         8                          81
  CLUS_2                         8                          91
  CLUS_3                         9                          84
  CLUS_4                         7                          63
  CLUS_5                         3                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6Q21) MUTATED        9      6     13      6
  AMP PEAK 11(6Q21) WILD-TYPE     89     37    121    113
D11V9, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         9                          89
  CLUS_2                         6                          37
  CLUS_3                        13                         121
  CLUS_4                         6                         113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(6Q21) MUTATED        4      6     13      2      2      7
  AMP PEAK 11(6Q21) WILD-TYPE     70     40     80     64     29     77
D11V10, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                         4                          70
  CLUS_2                         6                          40
  CLUS_3                        13                          80
  CLUS_4                         2                          64
  CLUS_5                         2                          29
  CLUS_6                         7                          77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(6Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q23.3) MUTATED       12     26      5      3
  AMP PEAK 12(6Q23.3) WILD-TYPE    157    114     54     37
D12V1, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                          12                           157
  CLUS_2                          26                           114
  CLUS_3                           5                            54
  CLUS_4                           3                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q23.3) MUTATED       13     14      7     12
  AMP PEAK 12(6Q23.3) WILD-TYPE    125    102     62     73
D12V2, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                          13                           125
  CLUS_2                          14                           102
  CLUS_3                           7                            62
  CLUS_4                          12                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q23.3) MUTATED        6      3      5      0      2
  AMP PEAK 12(6Q23.3) WILD-TYPE     31     26     29      5     17
D12V3, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           3                            26
  CLUS_3                           5                            29
  CLUS_4                           0                             5
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q23.3) MUTATED        4      2      7      3
  AMP PEAK 12(6Q23.3) WILD-TYPE     38     36     19     15
D12V4, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                           2                            36
  CLUS_3                           7                            19
  CLUS_4                           3                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q23.3) MUTATED        9     25     11
  AMP PEAK 12(6Q23.3) WILD-TYPE    107    155     97
D12V5, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                           9                           107
  CLUS_2                          25                           155
  CLUS_3                          11                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q23.3) MUTATED       13     14     18
  AMP PEAK 12(6Q23.3) WILD-TYPE    105     98    156
D12V6, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                          13                           105
  CLUS_2                          14                            98
  CLUS_3                          18                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q23.3) MUTATED        8     13     25
  AMP PEAK 12(6Q23.3) WILD-TYPE    112     83    164
D12V7, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                           8                           112
  CLUS_2                          13                            83
  CLUS_3                          25                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q23.3) MUTATED       13     12     13      7      1
  AMP PEAK 12(6Q23.3) WILD-TYPE     76     87     80     63     53
D12V8, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                          13                            76
  CLUS_2                          12                            87
  CLUS_3                          13                            80
  CLUS_4                           7                            63
  CLUS_5                           1                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q23.3) MUTATED       10      8     17      8
  AMP PEAK 12(6Q23.3) WILD-TYPE     88     35    117    111
D12V9, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                          10                            88
  CLUS_2                           8                            35
  CLUS_3                          17                           117
  CLUS_4                           8                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(6Q23.3) MUTATED        4      8     14      4      2     11
  AMP PEAK 12(6Q23.3) WILD-TYPE     70     38     79     62     29     73
D12V10, multiclass
        clus
vv       AMP PEAK 12(6Q23.3) MUTATED AMP PEAK 12(6Q23.3) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                           8                            38
  CLUS_3                          14                            79
  CLUS_4                           4                            62
  CLUS_5                           2                            29
  CLUS_6                          11                            73
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7P21.1) MUTATED       40     95     38     28
  AMP PEAK 13(7P21.1) WILD-TYPE    129     45     21     12
D13V1, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          40                           129
  CLUS_2                          95                            45
  CLUS_3                          38                            21
  CLUS_4                          28                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7P21.1) MUTATED       69     72     26     34
  AMP PEAK 13(7P21.1) WILD-TYPE     69     44     43     51
D13V2, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          69                            69
  CLUS_2                          72                            44
  CLUS_3                          26                            43
  CLUS_4                          34                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7P21.1) MUTATED       20     11     22      1      8
  AMP PEAK 13(7P21.1) WILD-TYPE     17     18     12      4     11
D13V3, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                          11                            18
  CLUS_3                          22                            12
  CLUS_4                           1                             4
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7P21.1) MUTATED       19     16     16     11
  AMP PEAK 13(7P21.1) WILD-TYPE     23     22     10      7
D13V4, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                          16                            22
  CLUS_3                          16                            10
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P21.1) MUTATED       55     87     57
  AMP PEAK 13(7P21.1) WILD-TYPE     61     93     51
D13V5, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          55                            61
  CLUS_2                          87                            93
  CLUS_3                          57                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P21.1) MUTATED       65     43     91
  AMP PEAK 13(7P21.1) WILD-TYPE     53     69     83
D13V6, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          65                            53
  CLUS_2                          43                            69
  CLUS_3                          91                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P21.1) MUTATED       52     54     93
  AMP PEAK 13(7P21.1) WILD-TYPE     68     42     96
D13V7, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          52                            68
  CLUS_2                          54                            42
  CLUS_3                          93                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7P21.1) MUTATED       47     53     32     43     24
  AMP PEAK 13(7P21.1) WILD-TYPE     42     46     61     27     30
D13V8, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          47                            42
  CLUS_2                          53                            46
  CLUS_3                          32                            61
  CLUS_4                          43                            27
  CLUS_5                          24                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7P21.1) MUTATED       55     21     60     58
  AMP PEAK 13(7P21.1) WILD-TYPE     43     22     74     61
D13V9, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          55                            43
  CLUS_2                          21                            22
  CLUS_3                          60                            74
  CLUS_4                          58                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7P21.1) MUTATED       29     21     55     38      2     49
  AMP PEAK 13(7P21.1) WILD-TYPE     45     25     38     28     29     35
D13V10, multiclass
        clus
vv       AMP PEAK 13(7P21.1) MUTATED AMP PEAK 13(7P21.1) WILD-TYPE
  CLUS_1                          29                            45
  CLUS_2                          21                            25
  CLUS_3                          55                            38
  CLUS_4                          38                            28
  CLUS_5                           2                            29
  CLUS_6                          49                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7P11.2) MUTATED       37     88     38     27
  AMP PEAK 14(7P11.2) WILD-TYPE    132     52     21     13
D14V1, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          37                           132
  CLUS_2                          88                            52
  CLUS_3                          38                            21
  CLUS_4                          27                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7P11.2) MUTATED       66     67     24     33
  AMP PEAK 14(7P11.2) WILD-TYPE     72     49     45     52
D14V2, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          66                            72
  CLUS_2                          67                            49
  CLUS_3                          24                            45
  CLUS_4                          33                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7P11.2) MUTATED       22     12     22      1      7
  AMP PEAK 14(7P11.2) WILD-TYPE     15     17     12      4     12
D14V3, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          22                            15
  CLUS_2                          12                            17
  CLUS_3                          22                            12
  CLUS_4                           1                             4
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7P11.2) MUTATED       21     17     16     10
  AMP PEAK 14(7P11.2) WILD-TYPE     21     21     10      8
D14V4, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          21                            21
  CLUS_2                          17                            21
  CLUS_3                          16                            10
  CLUS_4                          10                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7P11.2) MUTATED       52     83     53
  AMP PEAK 14(7P11.2) WILD-TYPE     64     97     55
D14V5, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          52                            64
  CLUS_2                          83                            97
  CLUS_3                          53                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7P11.2) MUTATED       56     45     87
  AMP PEAK 14(7P11.2) WILD-TYPE     62     67     87
D14V6, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          56                            62
  CLUS_2                          45                            67
  CLUS_3                          87                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7P11.2) MUTATED       51     48     90
  AMP PEAK 14(7P11.2) WILD-TYPE     69     48     99
D14V7, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          51                            69
  CLUS_2                          48                            48
  CLUS_3                          90                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7P11.2) MUTATED       48     49     32     38     22
  AMP PEAK 14(7P11.2) WILD-TYPE     41     50     61     32     32
D14V8, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          48                            41
  CLUS_2                          49                            50
  CLUS_3                          32                            61
  CLUS_4                          38                            32
  CLUS_5                          22                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7P11.2) MUTATED       55     20     56     53
  AMP PEAK 14(7P11.2) WILD-TYPE     43     23     78     66
D14V9, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          55                            43
  CLUS_2                          20                            23
  CLUS_3                          56                            78
  CLUS_4                          53                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(7P11.2) MUTATED       27     21     51     35      3     47
  AMP PEAK 14(7P11.2) WILD-TYPE     47     25     42     31     28     37
D14V10, multiclass
        clus
vv       AMP PEAK 14(7P11.2) MUTATED AMP PEAK 14(7P11.2) WILD-TYPE
  CLUS_1                          27                            47
  CLUS_2                          21                            25
  CLUS_3                          51                            42
  CLUS_4                          35                            31
  CLUS_5                           3                            28
  CLUS_6                          47                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8P11.23) MUTATED       36     36     17     34
  AMP PEAK 15(8P11.23) WILD-TYPE    133    104     42      6
D15V1, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           36                            133
  CLUS_2                           36                            104
  CLUS_3                           17                             42
  CLUS_4                           34                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8P11.23) MUTATED       35     41     13     34
  AMP PEAK 15(8P11.23) WILD-TYPE    103     75     56     51
D15V2, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           35                            103
  CLUS_2                           41                             75
  CLUS_3                           13                             56
  CLUS_4                           34                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8P11.23) MUTATED       13     10     12      1      4
  AMP PEAK 15(8P11.23) WILD-TYPE     24     19     22      4     15
D15V3, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                           10                             19
  CLUS_3                           12                             22
  CLUS_4                            1                              4
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8P11.23) MUTATED       14     13      9      4
  AMP PEAK 15(8P11.23) WILD-TYPE     28     25     17     14
D15V4, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           13                             25
  CLUS_3                            9                             17
  CLUS_4                            4                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P11.23) MUTATED       30     58     33
  AMP PEAK 15(8P11.23) WILD-TYPE     86    122     75
D15V5, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           30                             86
  CLUS_2                           58                            122
  CLUS_3                           33                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P11.23) MUTATED       42     32     47
  AMP PEAK 15(8P11.23) WILD-TYPE     76     80    127
D15V6, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           42                             76
  CLUS_2                           32                             80
  CLUS_3                           47                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P11.23) MUTATED       27     26     69
  AMP PEAK 15(8P11.23) WILD-TYPE     93     70    120
D15V7, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           27                             93
  CLUS_2                           26                             70
  CLUS_3                           69                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8P11.23) MUTATED       27     28     29     26     12
  AMP PEAK 15(8P11.23) WILD-TYPE     62     71     64     44     42
D15V8, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           27                             62
  CLUS_2                           28                             71
  CLUS_3                           29                             64
  CLUS_4                           26                             44
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8P11.23) MUTATED       28     10     46     36
  AMP PEAK 15(8P11.23) WILD-TYPE     70     33     88     83
D15V9, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           28                             70
  CLUS_2                           10                             33
  CLUS_3                           46                             88
  CLUS_4                           36                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8P11.23) MUTATED       22     13     32     21      8     24
  AMP PEAK 15(8P11.23) WILD-TYPE     52     33     61     45     23     60
D15V10, multiclass
        clus
vv       AMP PEAK 15(8P11.23) MUTATED AMP PEAK 15(8P11.23) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           13                             33
  CLUS_3                           32                             61
  CLUS_4                           21                             45
  CLUS_5                            8                             23
  CLUS_6                           24                             60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8P11.21) MUTATED       40     46     18     36
  AMP PEAK 16(8P11.21) WILD-TYPE    129     94     41      4
D16V1, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           40                            129
  CLUS_2                           46                             94
  CLUS_3                           18                             41
  CLUS_4                           36                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8P11.21) MUTATED       40     52     14     34
  AMP PEAK 16(8P11.21) WILD-TYPE     98     64     55     51
D16V2, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           40                             98
  CLUS_2                           52                             64
  CLUS_3                           14                             55
  CLUS_4                           34                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8P11.21) MUTATED       12      7     13      1      6
  AMP PEAK 16(8P11.21) WILD-TYPE     25     22     21      4     13
D16V3, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                            7                             22
  CLUS_3                           13                             21
  CLUS_4                            1                              4
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8P11.21) MUTATED       13     13      8      5
  AMP PEAK 16(8P11.21) WILD-TYPE     29     25     18     13
D16V4, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           13                             25
  CLUS_3                            8                             18
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       35     71     32
  AMP PEAK 16(8P11.21) WILD-TYPE     81    109     76
D16V5, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           35                             81
  CLUS_2                           71                            109
  CLUS_3                           32                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       47     36     55
  AMP PEAK 16(8P11.21) WILD-TYPE     71     76    119
D16V6, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           47                             71
  CLUS_2                           36                             76
  CLUS_3                           55                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       30     30     79
  AMP PEAK 16(8P11.21) WILD-TYPE     90     66    110
D16V7, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           30                             90
  CLUS_2                           30                             66
  CLUS_3                           79                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8P11.21) MUTATED       29     34     30     35     11
  AMP PEAK 16(8P11.21) WILD-TYPE     60     65     63     35     43
D16V8, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           29                             60
  CLUS_2                           34                             65
  CLUS_3                           30                             63
  CLUS_4                           35                             35
  CLUS_5                           11                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8P11.21) MUTATED       34     15     51     35
  AMP PEAK 16(8P11.21) WILD-TYPE     64     28     83     84
D16V9, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           34                             64
  CLUS_2                           15                             28
  CLUS_3                           51                             83
  CLUS_4                           35                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(8P11.21) MUTATED       22     17     40     19      7     30
  AMP PEAK 16(8P11.21) WILD-TYPE     52     29     53     47     24     54
D16V10, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           17                             29
  CLUS_3                           40                             53
  CLUS_4                           19                             47
  CLUS_5                            7                             24
  CLUS_6                           30                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(8Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(8Q22.3) MUTATED       82    110     36     36
  AMP PEAK 17(8Q22.3) WILD-TYPE     87     30     23      4
D17V1, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          82                            87
  CLUS_2                         110                            30
  CLUS_3                          36                            23
  CLUS_4                          36                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(8Q22.3) MUTATED       83     96     34     51
  AMP PEAK 17(8Q22.3) WILD-TYPE     55     20     35     34
D17V2, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          83                            55
  CLUS_2                          96                            20
  CLUS_3                          34                            35
  CLUS_4                          51                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(8Q22.3) MUTATED       22     11     26      4     13
  AMP PEAK 17(8Q22.3) WILD-TYPE     15     18      8      1      6
D17V3, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          22                            15
  CLUS_2                          11                            18
  CLUS_3                          26                             8
  CLUS_4                           4                             1
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(8Q22.3) MUTATED       26     19     20     11
  AMP PEAK 17(8Q22.3) WILD-TYPE     16     19      6      7
D17V4, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          26                            16
  CLUS_2                          19                            19
  CLUS_3                          20                             6
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q22.3) MUTATED       70    123     68
  AMP PEAK 17(8Q22.3) WILD-TYPE     46     57     40
D17V5, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          70                            46
  CLUS_2                         123                            57
  CLUS_3                          68                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q22.3) MUTATED       83     72    106
  AMP PEAK 17(8Q22.3) WILD-TYPE     35     40     68
D17V6, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          83                            35
  CLUS_2                          72                            40
  CLUS_3                         106                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q22.3) MUTATED       66     70    126
  AMP PEAK 17(8Q22.3) WILD-TYPE     54     26     63
D17V7, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          66                            54
  CLUS_2                          70                            26
  CLUS_3                         126                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(8Q22.3) MUTATED       57     70     51     55     29
  AMP PEAK 17(8Q22.3) WILD-TYPE     32     29     42     15     25
D17V8, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          57                            32
  CLUS_2                          70                            29
  CLUS_3                          51                            42
  CLUS_4                          55                            15
  CLUS_5                          29                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(8Q22.3) MUTATED       62     35     89     71
  AMP PEAK 17(8Q22.3) WILD-TYPE     36      8     45     48
D17V9, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          62                            36
  CLUS_2                          35                             8
  CLUS_3                          89                            45
  CLUS_4                          71                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(8Q22.3) MUTATED       42     36     71     43     10     55
  AMP PEAK 17(8Q22.3) WILD-TYPE     32     10     22     23     21     29
D17V10, multiclass
        clus
vv       AMP PEAK 17(8Q22.3) MUTATED AMP PEAK 17(8Q22.3) WILD-TYPE
  CLUS_1                          42                            32
  CLUS_2                          36                            10
  CLUS_3                          71                            22
  CLUS_4                          43                            23
  CLUS_5                          10                            21
  CLUS_6                          55                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9P24.1) MUTATED       18     31     31      8
  AMP PEAK 18(9P24.1) WILD-TYPE    151    109     28     32
D18V1, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          18                           151
  CLUS_2                          31                           109
  CLUS_3                          31                            28
  CLUS_4                           8                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9P24.1) MUTATED       44     20      6     18
  AMP PEAK 18(9P24.1) WILD-TYPE     94     96     63     67
D18V2, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          44                            94
  CLUS_2                          20                            96
  CLUS_3                           6                            63
  CLUS_4                          18                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9P24.1) MUTATED        7      6     10      0      5
  AMP PEAK 18(9P24.1) WILD-TYPE     30     23     24      5     14
D18V3, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                           6                            23
  CLUS_3                          10                            24
  CLUS_4                           0                             5
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9P24.1) MUTATED        7      7      8      6
  AMP PEAK 18(9P24.1) WILD-TYPE     35     31     18     12
D18V4, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                           7                            31
  CLUS_3                           8                            18
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       25     29     32
  AMP PEAK 18(9P24.1) WILD-TYPE     91    151     76
D18V5, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          25                            91
  CLUS_2                          29                           151
  CLUS_3                          32                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       21     14     51
  AMP PEAK 18(9P24.1) WILD-TYPE     97     98    123
D18V6, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          21                            97
  CLUS_2                          14                            98
  CLUS_3                          51                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       26     18     44
  AMP PEAK 18(9P24.1) WILD-TYPE     94     78    145
D18V7, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          26                            94
  CLUS_2                          18                            78
  CLUS_3                          44                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9P24.1) MUTATED       27     23     11     15     12
  AMP PEAK 18(9P24.1) WILD-TYPE     62     76     82     55     42
D18V8, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          27                            62
  CLUS_2                          23                            76
  CLUS_3                          11                            82
  CLUS_4                          15                            55
  CLUS_5                          12                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9P24.1) MUTATED       38      7     18     22
  AMP PEAK 18(9P24.1) WILD-TYPE     60     36    116     97
D18V9, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          38                            60
  CLUS_2                           7                            36
  CLUS_3                          18                           116
  CLUS_4                          22                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9P24.1) MUTATED       18      8     19      6      2     32
  AMP PEAK 18(9P24.1) WILD-TYPE     56     38     74     60     29     52
D18V10, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          18                            56
  CLUS_2                           8                            38
  CLUS_3                          19                            74
  CLUS_4                           6                            60
  CLUS_5                           2                            29
  CLUS_6                          32                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(10P14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P14) MUTATED       25     99     33     25
  AMP PEAK 19(10P14) WILD-TYPE    144     41     26     15
D19V1, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         25                          144
  CLUS_2                         99                           41
  CLUS_3                         33                           26
  CLUS_4                         25                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P14) MUTATED       54     76     27     25
  AMP PEAK 19(10P14) WILD-TYPE     84     40     42     60
D19V2, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         54                           84
  CLUS_2                         76                           40
  CLUS_3                         27                           42
  CLUS_4                         25                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P14) MUTATED       19      9     14      1     10
  AMP PEAK 19(10P14) WILD-TYPE     18     20     20      4      9
D19V3, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         19                           18
  CLUS_2                          9                           20
  CLUS_3                         14                           20
  CLUS_4                          1                            4
  CLUS_5                         10                            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P14) MUTATED       22     14      9      8
  AMP PEAK 19(10P14) WILD-TYPE     20     24     17     10
D19V4, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         22                           20
  CLUS_2                         14                           24
  CLUS_3                          9                           17
  CLUS_4                          8                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P14) MUTATED       56     82     42
  AMP PEAK 19(10P14) WILD-TYPE     60     98     66
D19V5, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         56                           60
  CLUS_2                         82                           98
  CLUS_3                         42                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P14) MUTATED       73     39     68
  AMP PEAK 19(10P14) WILD-TYPE     45     73    106
D19V6, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         73                           45
  CLUS_2                         39                           73
  CLUS_3                         68                          106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P14) MUTATED       50     52     79
  AMP PEAK 19(10P14) WILD-TYPE     70     44    110
D19V7, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         50                           70
  CLUS_2                         52                           44
  CLUS_3                         79                          110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P14) MUTATED       36     49     34     38     24
  AMP PEAK 19(10P14) WILD-TYPE     53     50     59     32     30
D19V8, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         36                           53
  CLUS_2                         49                           50
  CLUS_3                         34                           59
  CLUS_4                         38                           32
  CLUS_5                         24                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P14) MUTATED       43     24     56     53
  AMP PEAK 19(10P14) WILD-TYPE     55     19     78     66
D19V9, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         43                           55
  CLUS_2                         24                           19
  CLUS_3                         56                           78
  CLUS_4                         53                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P14) MUTATED       35     24     52     32      2     31
  AMP PEAK 19(10P14) WILD-TYPE     39     22     41     34     29     53
D19V10, multiclass
        clus
vv       AMP PEAK 19(10P14) MUTATED AMP PEAK 19(10P14) WILD-TYPE
  CLUS_1                         35                           39
  CLUS_2                         24                           22
  CLUS_3                         52                           41
  CLUS_4                         32                           34
  CLUS_5                          2                           29
  CLUS_6                         31                           53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11P13) MUTATED        7     15     24      5
  AMP PEAK 20(11P13) WILD-TYPE    162    125     35     35
D20V1, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                          7                          162
  CLUS_2                         15                          125
  CLUS_3                         24                           35
  CLUS_4                          5                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11P13) MUTATED       24     19      3      5
  AMP PEAK 20(11P13) WILD-TYPE    114     97     66     80
D20V2, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         24                          114
  CLUS_2                         19                           97
  CLUS_3                          3                           66
  CLUS_4                          5                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(11P13) MUTATED        1      2      7      0      5
  AMP PEAK 20(11P13) WILD-TYPE     36     27     27      5     14
D20V3, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                          1                           36
  CLUS_2                          2                           27
  CLUS_3                          7                           27
  CLUS_4                          0                            5
  CLUS_5                          5                           14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11P13) MUTATED        1      3      5      6
  AMP PEAK 20(11P13) WILD-TYPE     41     35     21     12
D20V4, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                          1                           41
  CLUS_2                          3                           35
  CLUS_3                          5                           21
  CLUS_4                          6                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11P13) MUTATED       19     15     17
  AMP PEAK 20(11P13) WILD-TYPE     97    165     91
D20V5, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         19                           97
  CLUS_2                         15                          165
  CLUS_3                         17                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11P13) MUTATED       16      4     31
  AMP PEAK 20(11P13) WILD-TYPE    102    108    143
D20V6, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         16                          102
  CLUS_2                          4                          108
  CLUS_3                         31                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11P13) MUTATED       20      9     22
  AMP PEAK 20(11P13) WILD-TYPE    100     87    167
D20V7, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         20                          100
  CLUS_2                          9                           87
  CLUS_3                         22                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(11P13) MUTATED       15     13      5     11      7
  AMP PEAK 20(11P13) WILD-TYPE     74     86     88     59     47
D20V8, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         15                           74
  CLUS_2                         13                           86
  CLUS_3                          5                           88
  CLUS_4                         11                           59
  CLUS_5                          7                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11P13) MUTATED       20      3     12     16
  AMP PEAK 20(11P13) WILD-TYPE     78     40    122    103
D20V9, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                         20                           78
  CLUS_2                          3                           40
  CLUS_3                         12                          122
  CLUS_4                         16                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(11P13) MUTATED        9      3      9      9      0     21
  AMP PEAK 20(11P13) WILD-TYPE     65     43     84     57     31     63
D20V10, multiclass
        clus
vv       AMP PEAK 20(11P13) MUTATED AMP PEAK 20(11P13) WILD-TYPE
  CLUS_1                          9                           65
  CLUS_2                          3                           43
  CLUS_3                          9                           84
  CLUS_4                          9                           57
  CLUS_5                          0                           31
  CLUS_6                         21                           63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(11Q13.3) MUTATED       41     55     14     25
  AMP PEAK 21(11Q13.3) WILD-TYPE    128     85     45     15
D21V1, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           41                            128
  CLUS_2                           55                             85
  CLUS_3                           14                             45
  CLUS_4                           25                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(11Q13.3) MUTATED       40     45     17     33
  AMP PEAK 21(11Q13.3) WILD-TYPE     98     71     52     52
D21V2, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           40                             98
  CLUS_2                           45                             71
  CLUS_3                           17                             52
  CLUS_4                           33                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(11Q13.3) MUTATED       17      7     16      1      9
  AMP PEAK 21(11Q13.3) WILD-TYPE     20     22     18      4     10
D21V3, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           17                             20
  CLUS_2                            7                             22
  CLUS_3                           16                             18
  CLUS_4                            1                              4
  CLUS_5                            9                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(11Q13.3) MUTATED       19     10     10     11
  AMP PEAK 21(11Q13.3) WILD-TYPE     23     28     16      7
D21V4, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           10                             28
  CLUS_3                           10                             16
  CLUS_4                           11                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(11Q13.3) MUTATED       27     69     38
  AMP PEAK 21(11Q13.3) WILD-TYPE     89    111     70
D21V5, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           27                             89
  CLUS_2                           69                            111
  CLUS_3                           38                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(11Q13.3) MUTATED       44     39     51
  AMP PEAK 21(11Q13.3) WILD-TYPE     74     73    123
D21V6, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           44                             74
  CLUS_2                           39                             73
  CLUS_3                           51                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(11Q13.3) MUTATED       34     33     68
  AMP PEAK 21(11Q13.3) WILD-TYPE     86     63    121
D21V7, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           34                             86
  CLUS_2                           33                             63
  CLUS_3                           68                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(11Q13.3) MUTATED       26     39     27     29     14
  AMP PEAK 21(11Q13.3) WILD-TYPE     63     60     66     41     40
D21V8, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           26                             63
  CLUS_2                           39                             60
  CLUS_3                           27                             66
  CLUS_4                           29                             41
  CLUS_5                           14                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(11Q13.3) MUTATED       35     18     46     33
  AMP PEAK 21(11Q13.3) WILD-TYPE     63     25     88     86
D21V9, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           35                             63
  CLUS_2                           18                             25
  CLUS_3                           46                             88
  CLUS_4                           33                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(11Q13.3) MUTATED       21     17     32     20      9     33
  AMP PEAK 21(11Q13.3) WILD-TYPE     53     29     61     46     22     51
D21V10, multiclass
        clus
vv       AMP PEAK 21(11Q13.3) MUTATED AMP PEAK 21(11Q13.3) WILD-TYPE
  CLUS_1                           21                             53
  CLUS_2                           17                             29
  CLUS_3                           32                             61
  CLUS_4                           20                             46
  CLUS_5                            9                             22
  CLUS_6                           33                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(11Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11Q22.2) MUTATED       14     28     13     16
  AMP PEAK 22(11Q22.2) WILD-TYPE    155    112     46     24
D22V1, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           14                            155
  CLUS_2                           28                            112
  CLUS_3                           13                             46
  CLUS_4                           16                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11Q22.2) MUTATED       25     27      8     11
  AMP PEAK 22(11Q22.2) WILD-TYPE    113     89     61     74
D22V2, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           25                            113
  CLUS_2                           27                             89
  CLUS_3                            8                             61
  CLUS_4                           11                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11Q22.2) MUTATED        6      3      7      0      4
  AMP PEAK 22(11Q22.2) WILD-TYPE     31     26     27      5     15
D22V3, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                            3                             26
  CLUS_3                            7                             27
  CLUS_4                            0                              5
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11Q22.2) MUTATED        5      5      5      5
  AMP PEAK 22(11Q22.2) WILD-TYPE     37     33     21     13
D22V4, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                            5                             33
  CLUS_3                            5                             21
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11Q22.2) MUTATED       17     31     23
  AMP PEAK 22(11Q22.2) WILD-TYPE     99    149     85
D22V5, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           17                             99
  CLUS_2                           31                            149
  CLUS_3                           23                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11Q22.2) MUTATED       26     14     31
  AMP PEAK 22(11Q22.2) WILD-TYPE     92     98    143
D22V6, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           26                             92
  CLUS_2                           14                             98
  CLUS_3                           31                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11Q22.2) MUTATED       16     25     30
  AMP PEAK 22(11Q22.2) WILD-TYPE    104     71    159
D22V7, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           16                            104
  CLUS_2                           25                             71
  CLUS_3                           30                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11Q22.2) MUTATED       15     26     10     15      5
  AMP PEAK 22(11Q22.2) WILD-TYPE     74     73     83     55     49
D22V8, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           15                             74
  CLUS_2                           26                             73
  CLUS_3                           10                             83
  CLUS_4                           15                             55
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11Q22.2) MUTATED       29     12     15     15
  AMP PEAK 22(11Q22.2) WILD-TYPE     69     31    119    104
D22V9, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           29                             69
  CLUS_2                           12                             31
  CLUS_3                           15                            119
  CLUS_4                           15                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(11Q22.2) MUTATED       10     13     12     11      2     23
  AMP PEAK 22(11Q22.2) WILD-TYPE     64     33     81     55     29     61
D22V10, multiclass
        clus
vv       AMP PEAK 22(11Q22.2) MUTATED AMP PEAK 22(11Q22.2) WILD-TYPE
  CLUS_1                           10                             64
  CLUS_2                           13                             33
  CLUS_3                           12                             81
  CLUS_4                           11                             55
  CLUS_5                            2                             29
  CLUS_6                           23                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(12P12.1) MUTATED       36     54     24     17
  AMP PEAK 23(12P12.1) WILD-TYPE    133     86     35     23
D23V1, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           36                            133
  CLUS_2                           54                             86
  CLUS_3                           24                             35
  CLUS_4                           17                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(12P12.1) MUTATED       51     42     14     24
  AMP PEAK 23(12P12.1) WILD-TYPE     87     74     55     61
D23V2, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           51                             87
  CLUS_2                           42                             74
  CLUS_3                           14                             55
  CLUS_4                           24                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(12P12.1) MUTATED       13      7     13      1      6
  AMP PEAK 23(12P12.1) WILD-TYPE     24     22     21      4     13
D23V3, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                            7                             22
  CLUS_3                           13                             21
  CLUS_4                            1                              4
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(12P12.1) MUTATED       16      9      9      6
  AMP PEAK 23(12P12.1) WILD-TYPE     26     29     17     12
D23V4, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           16                             26
  CLUS_2                            9                             29
  CLUS_3                            9                             17
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(12P12.1) MUTATED       34     57     40
  AMP PEAK 23(12P12.1) WILD-TYPE     82    123     68
D23V5, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           57                            123
  CLUS_3                           40                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(12P12.1) MUTATED       34     36     61
  AMP PEAK 23(12P12.1) WILD-TYPE     84     76    113
D23V6, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           34                             84
  CLUS_2                           36                             76
  CLUS_3                           61                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(12P12.1) MUTATED       41     28     62
  AMP PEAK 23(12P12.1) WILD-TYPE     79     68    127
D23V7, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           41                             79
  CLUS_2                           28                             68
  CLUS_3                           62                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(12P12.1) MUTATED       34     33     21     30     13
  AMP PEAK 23(12P12.1) WILD-TYPE     55     66     72     40     41
D23V8, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           34                             55
  CLUS_2                           33                             66
  CLUS_3                           21                             72
  CLUS_4                           30                             40
  CLUS_5                           13                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(12P12.1) MUTATED       42     14     40     32
  AMP PEAK 23(12P12.1) WILD-TYPE     56     29     94     87
D23V9, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           42                             56
  CLUS_2                           14                             29
  CLUS_3                           40                             94
  CLUS_4                           32                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(12P12.1) MUTATED       15     14     34     27      6     32
  AMP PEAK 23(12P12.1) WILD-TYPE     59     32     59     39     25     52
D23V10, multiclass
        clus
vv       AMP PEAK 23(12P12.1) MUTATED AMP PEAK 23(12P12.1) WILD-TYPE
  CLUS_1                           15                             59
  CLUS_2                           14                             32
  CLUS_3                           34                             59
  CLUS_4                           27                             39
  CLUS_5                            6                             25
  CLUS_6                           32                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(12Q15) MUTATED       42     57      9     10
  AMP PEAK 24(12Q15) WILD-TYPE    127     83     50     30
D24V1, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         42                          127
  CLUS_2                         57                           83
  CLUS_3                          9                           50
  CLUS_4                         10                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(12Q15) MUTATED       33     43     19     23
  AMP PEAK 24(12Q15) WILD-TYPE    105     73     50     62
D24V2, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         33                          105
  CLUS_2                         43                           73
  CLUS_3                         19                           50
  CLUS_4                         23                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(12Q15) MUTATED       18      4     12      2      5
  AMP PEAK 24(12Q15) WILD-TYPE     19     25     22      3     14
D24V3, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         18                           19
  CLUS_2                          4                           25
  CLUS_3                         12                           22
  CLUS_4                          2                            3
  CLUS_5                          5                           14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(12Q15) MUTATED       20      6      8      7
  AMP PEAK 24(12Q15) WILD-TYPE     22     32     18     11
D24V4, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         20                           22
  CLUS_2                          6                           32
  CLUS_3                          8                           18
  CLUS_4                          7                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(12Q15) MUTATED       35     64     19
  AMP PEAK 24(12Q15) WILD-TYPE     81    116     89
D24V5, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         35                           81
  CLUS_2                         64                          116
  CLUS_3                         19                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(12Q15) MUTATED       41     40     37
  AMP PEAK 24(12Q15) WILD-TYPE     77     72    137
D24V6, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         41                           77
  CLUS_2                         40                           72
  CLUS_3                         37                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(12Q15) MUTATED       36     34     48
  AMP PEAK 24(12Q15) WILD-TYPE     84     62    141
D24V7, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         36                           84
  CLUS_2                         34                           62
  CLUS_3                         48                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(12Q15) MUTATED       16     35     23     27     17
  AMP PEAK 24(12Q15) WILD-TYPE     73     64     70     43     37
D24V8, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         16                           73
  CLUS_2                         35                           64
  CLUS_3                         23                           70
  CLUS_4                         27                           43
  CLUS_5                         17                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(12Q15) MUTATED       17     18     41     41
  AMP PEAK 24(12Q15) WILD-TYPE     81     25     93     78
D24V9, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         17                           81
  CLUS_2                         18                           25
  CLUS_3                         41                           93
  CLUS_4                         41                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(12Q15) MUTATED       21     17     31     30      7     11
  AMP PEAK 24(12Q15) WILD-TYPE     53     29     62     36     24     73
D24V10, multiclass
        clus
vv       AMP PEAK 24(12Q15) MUTATED AMP PEAK 24(12Q15) WILD-TYPE
  CLUS_1                         21                           53
  CLUS_2                         17                           29
  CLUS_3                         31                           62
  CLUS_4                         30                           36
  CLUS_5                          7                           24
  CLUS_6                         11                           73
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(13Q22.1) MUTATED       34     56     23     15
  AMP PEAK 25(13Q22.1) WILD-TYPE    135     84     36     25
D25V1, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           34                            135
  CLUS_2                           56                             84
  CLUS_3                           23                             36
  CLUS_4                           15                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(13Q22.1) MUTATED       41     38     20     29
  AMP PEAK 25(13Q22.1) WILD-TYPE     97     78     49     56
D25V2, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           41                             97
  CLUS_2                           38                             78
  CLUS_3                           20                             49
  CLUS_4                           29                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(13Q22.1) MUTATED       12     10     12      2      5
  AMP PEAK 25(13Q22.1) WILD-TYPE     25     19     22      3     14
D25V3, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           10                             19
  CLUS_3                           12                             22
  CLUS_4                            2                              3
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(13Q22.1) MUTATED       12     13     10      6
  AMP PEAK 25(13Q22.1) WILD-TYPE     30     25     16     12
D25V4, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                           13                             25
  CLUS_3                           10                             16
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(13Q22.1) MUTATED       34     58     34
  AMP PEAK 25(13Q22.1) WILD-TYPE     82    122     74
D25V5, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           58                            122
  CLUS_3                           34                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(13Q22.1) MUTATED       42     30     54
  AMP PEAK 25(13Q22.1) WILD-TYPE     76     82    120
D25V6, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           42                             76
  CLUS_2                           30                             82
  CLUS_3                           54                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(13Q22.1) MUTATED       36     30     62
  AMP PEAK 25(13Q22.1) WILD-TYPE     84     66    127
D25V7, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           36                             84
  CLUS_2                           30                             66
  CLUS_3                           62                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(13Q22.1) MUTATED       33     31     24     24     16
  AMP PEAK 25(13Q22.1) WILD-TYPE     56     68     69     46     38
D25V8, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           33                             56
  CLUS_2                           31                             68
  CLUS_3                           24                             69
  CLUS_4                           24                             46
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(13Q22.1) MUTATED       33     14     38     41
  AMP PEAK 25(13Q22.1) WILD-TYPE     65     29     96     78
D25V9, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           33                             65
  CLUS_2                           14                             29
  CLUS_3                           38                             96
  CLUS_4                           41                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(13Q22.1) MUTATED       22     15     33     24      4     28
  AMP PEAK 25(13Q22.1) WILD-TYPE     52     31     60     42     27     56
D25V10, multiclass
        clus
vv       AMP PEAK 25(13Q22.1) MUTATED AMP PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           15                             31
  CLUS_3                           33                             60
  CLUS_4                           24                             42
  CLUS_5                            4                             27
  CLUS_6                           28                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(16P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(16P13.2) MUTATED       22     50      9      6
  AMP PEAK 26(16P13.2) WILD-TYPE    147     90     50     34
D26V1, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           22                            147
  CLUS_2                           50                             90
  CLUS_3                            9                             50
  CLUS_4                            6                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(16P13.2) MUTATED       26     42     10      9
  AMP PEAK 26(16P13.2) WILD-TYPE    112     74     59     76
D26V2, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           26                            112
  CLUS_2                           42                             74
  CLUS_3                           10                             59
  CLUS_4                            9                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(16P13.2) MUTATED        9      5      9      0      4
  AMP PEAK 26(16P13.2) WILD-TYPE     28     24     25      5     15
D26V3, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                            5                             24
  CLUS_3                            9                             25
  CLUS_4                            0                              5
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(16P13.2) MUTATED        8      8      6      5
  AMP PEAK 26(16P13.2) WILD-TYPE     34     30     20     13
D26V4, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            8                             30
  CLUS_3                            6                             20
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(16P13.2) MUTATED       22     46     19
  AMP PEAK 26(16P13.2) WILD-TYPE     94    134     89
D26V5, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           22                             94
  CLUS_2                           46                            134
  CLUS_3                           19                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(16P13.2) MUTATED       34     21     32
  AMP PEAK 26(16P13.2) WILD-TYPE     84     91    142
D26V6, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           34                             84
  CLUS_2                           21                             91
  CLUS_3                           32                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(16P13.2) MUTATED       20     26     41
  AMP PEAK 26(16P13.2) WILD-TYPE    100     70    148
D26V7, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           20                            100
  CLUS_2                           26                             70
  CLUS_3                           41                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(16P13.2) MUTATED       22     26     11     18     10
  AMP PEAK 26(16P13.2) WILD-TYPE     67     73     82     52     44
D26V8, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           22                             67
  CLUS_2                           26                             73
  CLUS_3                           11                             82
  CLUS_4                           18                             52
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(16P13.2) MUTATED       19     13     34     21
  AMP PEAK 26(16P13.2) WILD-TYPE     79     30    100     98
D26V9, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           19                             79
  CLUS_2                           13                             30
  CLUS_3                           34                            100
  CLUS_4                           21                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(16P13.2) MUTATED       14     12     29     13      1     18
  AMP PEAK 26(16P13.2) WILD-TYPE     60     34     64     53     30     66
D26V10, multiclass
        clus
vv       AMP PEAK 26(16P13.2) MUTATED AMP PEAK 26(16P13.2) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                           12                             34
  CLUS_3                           29                             64
  CLUS_4                           13                             53
  CLUS_5                            1                             30
  CLUS_6                           18                             66
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(16Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(16Q22.1) MUTATED       31     58     10      9
  AMP PEAK 27(16Q22.1) WILD-TYPE    138     82     49     31
D27V1, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           31                            138
  CLUS_2                           58                             82
  CLUS_3                           10                             49
  CLUS_4                            9                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(16Q22.1) MUTATED       39     35     16     18
  AMP PEAK 27(16Q22.1) WILD-TYPE     99     81     53     67
D27V2, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           39                             99
  CLUS_2                           35                             81
  CLUS_3                           16                             53
  CLUS_4                           18                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(16Q22.1) MUTATED        7      6     16      0      6
  AMP PEAK 27(16Q22.1) WILD-TYPE     30     23     18      5     13
D27V3, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                            7                             30
  CLUS_2                            6                             23
  CLUS_3                           16                             18
  CLUS_4                            0                              5
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(16Q22.1) MUTATED        6     10     12      7
  AMP PEAK 27(16Q22.1) WILD-TYPE     36     28     14     11
D27V4, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           10                             28
  CLUS_3                           12                             14
  CLUS_4                            7                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(16Q22.1) MUTATED       38     42     27
  AMP PEAK 27(16Q22.1) WILD-TYPE     78    138     81
D27V5, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           38                             78
  CLUS_2                           42                            138
  CLUS_3                           27                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(16Q22.1) MUTATED       41     18     48
  AMP PEAK 27(16Q22.1) WILD-TYPE     77     94    126
D27V6, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           41                             77
  CLUS_2                           18                             94
  CLUS_3                           48                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(16Q22.1) MUTATED       35     33     40
  AMP PEAK 27(16Q22.1) WILD-TYPE     85     63    149
D27V7, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           35                             85
  CLUS_2                           33                             63
  CLUS_3                           40                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(16Q22.1) MUTATED       25     35     13     17     18
  AMP PEAK 27(16Q22.1) WILD-TYPE     64     64     80     53     36
D27V8, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           25                             64
  CLUS_2                           35                             64
  CLUS_3                           13                             80
  CLUS_4                           17                             53
  CLUS_5                           18                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(16Q22.1) MUTATED       26     14     28     39
  AMP PEAK 27(16Q22.1) WILD-TYPE     72     29    106     80
D27V9, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           26                             72
  CLUS_2                           14                             29
  CLUS_3                           28                            106
  CLUS_4                           39                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(16Q22.1) MUTATED       23     13     23     25      1     22
  AMP PEAK 27(16Q22.1) WILD-TYPE     51     33     70     41     30     62
D27V10, multiclass
        clus
vv       AMP PEAK 27(16Q22.1) MUTATED AMP PEAK 27(16Q22.1) WILD-TYPE
  CLUS_1                           23                             51
  CLUS_2                           13                             33
  CLUS_3                           23                             70
  CLUS_4                           25                             41
  CLUS_5                            1                             30
  CLUS_6                           22                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(17Q12) MUTATED       46     77     18     25
  AMP PEAK 28(17Q12) WILD-TYPE    123     63     41     15
D28V1, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         46                          123
  CLUS_2                         77                           63
  CLUS_3                         18                           41
  CLUS_4                         25                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(17Q12) MUTATED       40     61     27     38
  AMP PEAK 28(17Q12) WILD-TYPE     98     55     42     47
D28V2, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         40                           98
  CLUS_2                         61                           55
  CLUS_3                         27                           42
  CLUS_4                         38                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(17Q12) MUTATED       22     11     13      0      8
  AMP PEAK 28(17Q12) WILD-TYPE     15     18     21      5     11
D28V3, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         22                           15
  CLUS_2                         11                           18
  CLUS_3                         13                           21
  CLUS_4                          0                            5
  CLUS_5                          8                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(17Q12) MUTATED       26     11      9      8
  AMP PEAK 28(17Q12) WILD-TYPE     16     27     17     10
D28V4, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         26                           16
  CLUS_2                         11                           27
  CLUS_3                          9                           17
  CLUS_4                          8                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(17Q12) MUTATED       40     91     34
  AMP PEAK 28(17Q12) WILD-TYPE     76     89     74
D28V5, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         40                           76
  CLUS_2                         91                           89
  CLUS_3                         34                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(17Q12) MUTATED       50     56     59
  AMP PEAK 28(17Q12) WILD-TYPE     68     56    115
D28V6, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         50                           68
  CLUS_2                         56                           56
  CLUS_3                         59                          115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(17Q12) MUTATED       35     49     81
  AMP PEAK 28(17Q12) WILD-TYPE     85     47    108
D28V7, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         35                           85
  CLUS_2                         49                           47
  CLUS_3                         81                          108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(17Q12) MUTATED       29     46     33     38     19
  AMP PEAK 28(17Q12) WILD-TYPE     60     53     60     32     35
D28V8, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         29                           60
  CLUS_2                         46                           53
  CLUS_3                         33                           60
  CLUS_4                         38                           32
  CLUS_5                         19                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(17Q12) MUTATED       31     24     64     43
  AMP PEAK 28(17Q12) WILD-TYPE     67     19     70     76
D28V9, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         31                           67
  CLUS_2                         24                           19
  CLUS_3                         64                           70
  CLUS_4                         43                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(17Q12) MUTATED       23     26     57     25      5     26
  AMP PEAK 28(17Q12) WILD-TYPE     51     20     36     41     26     58
D28V10, multiclass
        clus
vv       AMP PEAK 28(17Q12) MUTATED AMP PEAK 28(17Q12) WILD-TYPE
  CLUS_1                         23                           51
  CLUS_2                         26                           20
  CLUS_3                         57                           36
  CLUS_4                         25                           41
  CLUS_5                          5                           26
  CLUS_6                         26                           58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(17Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(17Q23.3) MUTATED       56     87     24     27
  AMP PEAK 29(17Q23.3) WILD-TYPE    113     53     35     13
D29V1, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           56                            113
  CLUS_2                           87                             53
  CLUS_3                           24                             35
  CLUS_4                           27                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(17Q23.3) MUTATED       55     69     30     40
  AMP PEAK 29(17Q23.3) WILD-TYPE     83     47     39     45
D29V2, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           55                             83
  CLUS_2                           69                             47
  CLUS_3                           30                             39
  CLUS_4                           40                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(17Q23.3) MUTATED       26     13     19      1      9
  AMP PEAK 29(17Q23.3) WILD-TYPE     11     16     15      4     10
D29V3, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           26                             11
  CLUS_2                           13                             16
  CLUS_3                           19                             15
  CLUS_4                            1                              4
  CLUS_5                            9                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(17Q23.3) MUTATED       26     15     15     12
  AMP PEAK 29(17Q23.3) WILD-TYPE     16     23     11      6
D29V4, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                           15                             23
  CLUS_3                           15                             11
  CLUS_4                           12                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(17Q23.3) MUTATED       47     95     50
  AMP PEAK 29(17Q23.3) WILD-TYPE     69     85     58
D29V5, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           47                             69
  CLUS_2                           95                             85
  CLUS_3                           50                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(17Q23.3) MUTATED       58     58     76
  AMP PEAK 29(17Q23.3) WILD-TYPE     60     54     98
D29V6, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           58                             60
  CLUS_2                           58                             54
  CLUS_3                           76                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(17Q23.3) MUTATED       50     52     91
  AMP PEAK 29(17Q23.3) WILD-TYPE     70     44     98
D29V7, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           50                             70
  CLUS_2                           52                             44
  CLUS_3                           91                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(17Q23.3) MUTATED       43     45     40     40     25
  AMP PEAK 29(17Q23.3) WILD-TYPE     46     54     53     30     29
D29V8, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           43                             46
  CLUS_2                           45                             54
  CLUS_3                           40                             53
  CLUS_4                           40                             30
  CLUS_5                           25                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(17Q23.3) MUTATED       39     25     70     56
  AMP PEAK 29(17Q23.3) WILD-TYPE     59     18     64     63
D29V9, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           39                             59
  CLUS_2                           25                             18
  CLUS_3                           70                             64
  CLUS_4                           56                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(17Q23.3) MUTATED       28     27     55     38      6     36
  AMP PEAK 29(17Q23.3) WILD-TYPE     46     19     38     28     25     48
D29V10, multiclass
        clus
vv       AMP PEAK 29(17Q23.3) MUTATED AMP PEAK 29(17Q23.3) WILD-TYPE
  CLUS_1                           28                             46
  CLUS_2                           27                             19
  CLUS_3                           55                             38
  CLUS_4                           38                             28
  CLUS_5                            6                             25
  CLUS_6                           36                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(19Q12) MUTATED       35     91     21     17
  AMP PEAK 30(19Q12) WILD-TYPE    134     49     38     23
D30V1, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         35                          134
  CLUS_2                         91                           49
  CLUS_3                         21                           38
  CLUS_4                         17                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(19Q12) MUTATED       43     67     27     27
  AMP PEAK 30(19Q12) WILD-TYPE     95     49     42     58
D30V2, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         43                           95
  CLUS_2                         67                           49
  CLUS_3                         27                           42
  CLUS_4                         27                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(19Q12) MUTATED       18     11     15      1      8
  AMP PEAK 30(19Q12) WILD-TYPE     19     18     19      4     11
D30V3, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         18                           19
  CLUS_2                         11                           18
  CLUS_3                         15                           19
  CLUS_4                          1                            4
  CLUS_5                          8                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(19Q12) MUTATED       19     16     12      6
  AMP PEAK 30(19Q12) WILD-TYPE     23     22     14     12
D30V4, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         19                           23
  CLUS_2                         16                           22
  CLUS_3                         12                           14
  CLUS_4                          6                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(19Q12) MUTATED       46     80     38
  AMP PEAK 30(19Q12) WILD-TYPE     70    100     70
D30V5, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         46                           70
  CLUS_2                         80                          100
  CLUS_3                         38                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(19Q12) MUTATED       56     45     63
  AMP PEAK 30(19Q12) WILD-TYPE     62     67    111
D30V6, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         56                           62
  CLUS_2                         45                           67
  CLUS_3                         63                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(19Q12) MUTATED       51     44     69
  AMP PEAK 30(19Q12) WILD-TYPE     69     52    120
D30V7, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         51                           69
  CLUS_2                         44                           52
  CLUS_3                         69                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(19Q12) MUTATED       32     43     26     36     27
  AMP PEAK 30(19Q12) WILD-TYPE     57     56     67     34     27
D30V8, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         32                           57
  CLUS_2                         43                           56
  CLUS_3                         26                           67
  CLUS_4                         36                           34
  CLUS_5                         27                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(19Q12) MUTATED       33     22     57     47
  AMP PEAK 30(19Q12) WILD-TYPE     65     21     77     72
D30V9, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         33                           65
  CLUS_2                         22                           21
  CLUS_3                         57                           77
  CLUS_4                         47                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(19Q12) MUTATED       27     19     46     32      6     29
  AMP PEAK 30(19Q12) WILD-TYPE     47     27     47     34     25     55
D30V10, multiclass
        clus
vv       AMP PEAK 30(19Q12) MUTATED AMP PEAK 30(19Q12) WILD-TYPE
  CLUS_1                         27                           47
  CLUS_2                         19                           27
  CLUS_3                         46                           47
  CLUS_4                         32                           34
  CLUS_5                          6                           25
  CLUS_6                         29                           55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(19Q13.43) MUTATED       35     82     19     18
  AMP PEAK 31(19Q13.43) WILD-TYPE    134     58     40     22
D31V1, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            35                             134
  CLUS_2                            82                              58
  CLUS_3                            19                              40
  CLUS_4                            18                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(19Q13.43) MUTATED       39     61     22     32
  AMP PEAK 31(19Q13.43) WILD-TYPE     99     55     47     53
D31V2, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            39                              99
  CLUS_2                            61                              55
  CLUS_3                            22                              47
  CLUS_4                            32                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(19Q13.43) MUTATED       19      7     15      2     10
  AMP PEAK 31(19Q13.43) WILD-TYPE     18     22     19      3      9
D31V3, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            19                              18
  CLUS_2                             7                              22
  CLUS_3                            15                              19
  CLUS_4                             2                               3
  CLUS_5                            10                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(19Q13.43) MUTATED       19     12     14      8
  AMP PEAK 31(19Q13.43) WILD-TYPE     23     26     12     10
D31V4, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            19                              23
  CLUS_2                            12                              26
  CLUS_3                            14                              12
  CLUS_4                             8                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(19Q13.43) MUTATED       37     76     41
  AMP PEAK 31(19Q13.43) WILD-TYPE     79    104     67
D31V5, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            37                              79
  CLUS_2                            76                             104
  CLUS_3                            41                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(19Q13.43) MUTATED       49     40     65
  AMP PEAK 31(19Q13.43) WILD-TYPE     69     72    109
D31V6, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            49                              69
  CLUS_2                            40                              72
  CLUS_3                            65                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(19Q13.43) MUTATED       42     41     71
  AMP PEAK 31(19Q13.43) WILD-TYPE     78     55    118
D31V7, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            42                              78
  CLUS_2                            41                              55
  CLUS_3                            71                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(19Q13.43) MUTATED       30     43     24     38     19
  AMP PEAK 31(19Q13.43) WILD-TYPE     59     56     69     32     35
D31V8, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            30                              59
  CLUS_2                            43                              56
  CLUS_3                            24                              69
  CLUS_4                            38                              32
  CLUS_5                            19                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(19Q13.43) MUTATED       32     24     55     39
  AMP PEAK 31(19Q13.43) WILD-TYPE     66     19     79     80
D31V9, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            32                              66
  CLUS_2                            24                              19
  CLUS_3                            55                              79
  CLUS_4                            39                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(19Q13.43) MUTATED       22     24     47     24      7     26
  AMP PEAK 31(19Q13.43) WILD-TYPE     52     22     46     42     24     58
D31V10, multiclass
        clus
vv       AMP PEAK 31(19Q13.43) MUTATED AMP PEAK 31(19Q13.43) WILD-TYPE
  CLUS_1                            22                              52
  CLUS_2                            24                              22
  CLUS_3                            47                              46
  CLUS_4                            24                              42
  CLUS_5                             7                              24
  CLUS_6                            26                              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(20Q11.21) MUTATED       73    108     47     34
  AMP PEAK 32(20Q11.21) WILD-TYPE     96     32     12      6
D32V1, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            73                              96
  CLUS_2                           108                              32
  CLUS_3                            47                              12
  CLUS_4                            34                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(20Q11.21) MUTATED       82     88     37     55
  AMP PEAK 32(20Q11.21) WILD-TYPE     56     28     32     30
D32V2, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            82                              56
  CLUS_2                            88                              28
  CLUS_3                            37                              32
  CLUS_4                            55                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(20Q11.21) MUTATED       25     19     23      2     14
  AMP PEAK 32(20Q11.21) WILD-TYPE     12     10     11      3      5
D32V3, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            25                              12
  CLUS_2                            19                              10
  CLUS_3                            23                              11
  CLUS_4                             2                               3
  CLUS_5                            14                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(20Q11.21) MUTATED       22     28     17     16
  AMP PEAK 32(20Q11.21) WILD-TYPE     20     10      9      2
D32V4, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            22                              20
  CLUS_2                            28                              10
  CLUS_3                            17                               9
  CLUS_4                            16                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(20Q11.21) MUTATED       72    120     68
  AMP PEAK 32(20Q11.21) WILD-TYPE     44     60     40
D32V5, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            72                              44
  CLUS_2                           120                              60
  CLUS_3                            68                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(20Q11.21) MUTATED       86     64    110
  AMP PEAK 32(20Q11.21) WILD-TYPE     32     48     64
D32V6, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            86                              32
  CLUS_2                            64                              48
  CLUS_3                           110                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(20Q11.21) MUTATED       74     67    121
  AMP PEAK 32(20Q11.21) WILD-TYPE     46     29     68
D32V7, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            74                              46
  CLUS_2                            67                              29
  CLUS_3                           121                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(20Q11.21) MUTATED       53     71     51     52     35
  AMP PEAK 32(20Q11.21) WILD-TYPE     36     28     42     18     19
D32V8, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            53                              36
  CLUS_2                            71                              28
  CLUS_3                            51                              42
  CLUS_4                            52                              18
  CLUS_5                            35                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(20Q11.21) MUTATED       64     33     82     79
  AMP PEAK 32(20Q11.21) WILD-TYPE     34     10     52     40
D32V9, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            64                              34
  CLUS_2                            33                              10
  CLUS_3                            82                              52
  CLUS_4                            79                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(20Q11.21) MUTATED       48     34     69     46     10     51
  AMP PEAK 32(20Q11.21) WILD-TYPE     26     12     24     20     21     33
D32V10, multiclass
        clus
vv       AMP PEAK 32(20Q11.21) MUTATED AMP PEAK 32(20Q11.21) WILD-TYPE
  CLUS_1                            48                              26
  CLUS_2                            34                              12
  CLUS_3                            69                              24
  CLUS_4                            46                              20
  CLUS_5                            10                              21
  CLUS_6                            51                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(22Q12.2) MUTATED       19     48      9     11
  AMP PEAK 33(22Q12.2) WILD-TYPE    150     92     50     29
D33V1, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           19                            150
  CLUS_2                           48                             92
  CLUS_3                            9                             50
  CLUS_4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(22Q12.2) MUTATED       20     35     12     20
  AMP PEAK 33(22Q12.2) WILD-TYPE    118     81     57     65
D33V2, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           20                            118
  CLUS_2                           35                             81
  CLUS_3                           12                             57
  CLUS_4                           20                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(22Q12.2) MUTATED       11      5     10      1      2
  AMP PEAK 33(22Q12.2) WILD-TYPE     26     24     24      4     17
D33V3, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           11                             26
  CLUS_2                            5                             24
  CLUS_3                           10                             24
  CLUS_4                            1                              4
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(22Q12.2) MUTATED       12      9      5      3
  AMP PEAK 33(22Q12.2) WILD-TYPE     30     29     21     15
D33V4, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            9                             29
  CLUS_3                            5                             21
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(22Q12.2) MUTATED       22     50     14
  AMP PEAK 33(22Q12.2) WILD-TYPE     94    130     94
D33V5, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           22                             94
  CLUS_2                           50                            130
  CLUS_3                           14                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(22Q12.2) MUTATED       32     26     28
  AMP PEAK 33(22Q12.2) WILD-TYPE     86     86    146
D33V6, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           32                             86
  CLUS_2                           26                             86
  CLUS_3                           28                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(22Q12.2) MUTATED       19     19     48
  AMP PEAK 33(22Q12.2) WILD-TYPE    101     77    141
D33V7, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           19                            101
  CLUS_2                           19                             77
  CLUS_3                           48                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(22Q12.2) MUTATED       15     20     18     22     11
  AMP PEAK 33(22Q12.2) WILD-TYPE     74     79     75     48     43
D33V8, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           15                             74
  CLUS_2                           20                             79
  CLUS_3                           18                             75
  CLUS_4                           22                             48
  CLUS_5                           11                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(22Q12.2) MUTATED       16     10     33     26
  AMP PEAK 33(22Q12.2) WILD-TYPE     82     33    101     93
D33V9, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           16                             82
  CLUS_2                           10                             33
  CLUS_3                           33                            101
  CLUS_4                           26                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(22Q12.2) MUTATED       17     10     29     10      2     17
  AMP PEAK 33(22Q12.2) WILD-TYPE     57     36     64     56     29     67
D33V10, multiclass
        clus
vv       AMP PEAK 33(22Q12.2) MUTATED AMP PEAK 33(22Q12.2) WILD-TYPE
  CLUS_1                           17                             57
  CLUS_2                           10                             36
  CLUS_3                           29                             64
  CLUS_4                           10                             56
  CLUS_5                            2                             29
  CLUS_6                           17                             67
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       33     34     13     11
  DEL PEAK  1(1P36.11) WILD-TYPE    136    106     46     29
D34V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           33                            136
  CLUS_2                           34                            106
  CLUS_3                           13                             46
  CLUS_4                           11                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       34     33     12     12
  DEL PEAK  1(1P36.11) WILD-TYPE    104     83     57     73
D34V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           34                            104
  CLUS_2                           33                             83
  CLUS_3                           12                             57
  CLUS_4                           12                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        3      8      9      1      5
  DEL PEAK  1(1P36.11) WILD-TYPE     34     21     25      4     14
D34V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            8                             21
  CLUS_3                            9                             25
  CLUS_4                            1                              4
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        3     10      9      4
  DEL PEAK  1(1P36.11) WILD-TYPE     39     28     17     14
D34V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           10                             28
  CLUS_3                            9                             17
  CLUS_4                            4                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       22     42     26
  DEL PEAK  1(1P36.11) WILD-TYPE     94    138     82
D34V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           22                             94
  CLUS_2                           42                            138
  CLUS_3                           26                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       26     24     40
  DEL PEAK  1(1P36.11) WILD-TYPE     92     88    134
D34V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           26                             92
  CLUS_2                           24                             88
  CLUS_3                           40                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       27     24     39
  DEL PEAK  1(1P36.11) WILD-TYPE     93     72    150
D34V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           27                             93
  CLUS_2                           24                             72
  CLUS_3                           39                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       20     30     16     18      6
  DEL PEAK  1(1P36.11) WILD-TYPE     69     69     77     52     48
D34V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           20                             69
  CLUS_2                           30                             69
  CLUS_3                           16                             77
  CLUS_4                           18                             52
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       27     11     29     18
  DEL PEAK  1(1P36.11) WILD-TYPE     71     32    105    101
D34V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           27                             71
  CLUS_2                           11                             32
  CLUS_3                           29                            105
  CLUS_4                           18                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       12     14     23     14      3     19
  DEL PEAK  1(1P36.11) WILD-TYPE     62     32     70     52     28     65
D34V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           14                             32
  CLUS_3                           23                             70
  CLUS_4                           14                             52
  CLUS_5                            3                             28
  CLUS_6                           19                             65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q32.1) MUTATED       18     36     12      5
  DEL PEAK  2(1Q32.1) WILD-TYPE    151    104     47     35
D35V1, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                           151
  CLUS_2                          36                           104
  CLUS_3                          12                            47
  CLUS_4                           5                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q32.1) MUTATED       17     31     12     11
  DEL PEAK  2(1Q32.1) WILD-TYPE    121     85     57     74
D35V2, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          17                           121
  CLUS_2                          31                            85
  CLUS_3                          12                            57
  CLUS_4                          11                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q32.1) MUTATED        4      6      6      2      5
  DEL PEAK  2(1Q32.1) WILD-TYPE     33     23     28      3     14
D35V3, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                           6                            23
  CLUS_3                           6                            28
  CLUS_4                           2                             3
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q32.1) MUTATED        6      8      4      5
  DEL PEAK  2(1Q32.1) WILD-TYPE     36     30     22     13
D35V4, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                           8                            30
  CLUS_3                           4                            22
  CLUS_4                           5                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q32.1) MUTATED       18     37     15
  DEL PEAK  2(1Q32.1) WILD-TYPE     98    143     93
D35V5, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                            98
  CLUS_2                          37                           143
  CLUS_3                          15                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q32.1) MUTATED       28     20     22
  DEL PEAK  2(1Q32.1) WILD-TYPE     90     92    152
D35V6, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          28                            90
  CLUS_2                          20                            92
  CLUS_3                          22                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q32.1) MUTATED       18     20     33
  DEL PEAK  2(1Q32.1) WILD-TYPE    102     76    156
D35V7, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                           102
  CLUS_2                          20                            76
  CLUS_3                          33                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q32.1) MUTATED       10     19     15     17     10
  DEL PEAK  2(1Q32.1) WILD-TYPE     79     80     78     53     44
D35V8, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                            79
  CLUS_2                          19                            80
  CLUS_3                          15                            78
  CLUS_4                          17                            53
  CLUS_5                          10                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q32.1) MUTATED       16      9     28     16
  DEL PEAK  2(1Q32.1) WILD-TYPE     82     34    106    103
D35V9, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          16                            82
  CLUS_2                           9                            34
  CLUS_3                          28                           106
  CLUS_4                          16                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q32.1) MUTATED       11      7     22     14      1     14
  DEL PEAK  2(1Q32.1) WILD-TYPE     63     39     71     52     30     70
D35V10, multiclass
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          11                            63
  CLUS_2                           7                            39
  CLUS_3                          22                            71
  CLUS_4                          14                            52
  CLUS_5                           1                            30
  CLUS_6                          14                            70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       37     60     22     15
  DEL PEAK  3(2Q22.1) WILD-TYPE    132     80     37     25
D36V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          37                           132
  CLUS_2                          60                            80
  CLUS_3                          22                            37
  CLUS_4                          15                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       36     51     19     28
  DEL PEAK  3(2Q22.1) WILD-TYPE    102     65     50     57
D36V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          36                           102
  CLUS_2                          51                            65
  CLUS_3                          19                            50
  CLUS_4                          28                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       13      9      7      0      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     24     20     27      5     11
D36V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          13                            24
  CLUS_2                           9                            20
  CLUS_3                           7                            27
  CLUS_4                           0                             5
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       13     10      8      6
  DEL PEAK  3(2Q22.1) WILD-TYPE     29     28     18     12
D36V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          10                            28
  CLUS_3                           8                            18
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       34     68     30
  DEL PEAK  3(2Q22.1) WILD-TYPE     82    112     78
D36V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          34                            82
  CLUS_2                          68                           112
  CLUS_3                          30                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       44     40     48
  DEL PEAK  3(2Q22.1) WILD-TYPE     74     72    126
D36V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          44                            74
  CLUS_2                          40                            72
  CLUS_3                          48                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       29     34     69
  DEL PEAK  3(2Q22.1) WILD-TYPE     91     62    120
D36V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          29                            91
  CLUS_2                          34                            62
  CLUS_3                          69                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       30     30     29     30     13
  DEL PEAK  3(2Q22.1) WILD-TYPE     59     69     64     40     41
D36V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          30                            59
  CLUS_2                          30                            69
  CLUS_3                          29                            64
  CLUS_4                          30                            40
  CLUS_5                          13                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       30     14     52     31
  DEL PEAK  3(2Q22.1) WILD-TYPE     68     29     82     88
D36V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          30                            68
  CLUS_2                          14                            29
  CLUS_3                          52                            82
  CLUS_4                          31                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED       20     16     43     20      4     24
  DEL PEAK  3(2Q22.1) WILD-TYPE     54     30     50     46     27     60
D36V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          20                            54
  CLUS_2                          16                            30
  CLUS_3                          43                            50
  CLUS_4                          20                            46
  CLUS_5                           4                            27
  CLUS_6                          24                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  4(2Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q34) MUTATED       39     83     37     15
  DEL PEAK  4(2Q34) WILD-TYPE    130     57     22     25
D37V1, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        39                         130
  CLUS_2                        83                          57
  CLUS_3                        37                          22
  CLUS_4                        15                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q34) MUTATED       45     67     26     36
  DEL PEAK  4(2Q34) WILD-TYPE     93     49     43     49
D37V2, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        45                          93
  CLUS_2                        67                          49
  CLUS_3                        26                          43
  CLUS_4                        36                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q34) MUTATED       16     11     17      1      8
  DEL PEAK  4(2Q34) WILD-TYPE     21     18     17      4     11
D37V3, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        16                          21
  CLUS_2                        11                          18
  CLUS_3                        17                          17
  CLUS_4                         1                           4
  CLUS_5                         8                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q34) MUTATED       17     16     14      6
  DEL PEAK  4(2Q34) WILD-TYPE     25     22     12     12
D37V4, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        17                          25
  CLUS_2                        16                          22
  CLUS_3                        14                          12
  CLUS_4                         6                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q34) MUTATED       49     82     41
  DEL PEAK  4(2Q34) WILD-TYPE     67     98     67
D37V5, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        49                          67
  CLUS_2                        82                          98
  CLUS_3                        41                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q34) MUTATED       57     51     64
  DEL PEAK  4(2Q34) WILD-TYPE     61     61    110
D37V6, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        57                          61
  CLUS_2                        51                          61
  CLUS_3                        64                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q34) MUTATED       43     48     82
  DEL PEAK  4(2Q34) WILD-TYPE     77     48    107
D37V7, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        43                          77
  CLUS_2                        48                          48
  CLUS_3                        82                         107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q34) MUTATED       37     46     37     34     19
  DEL PEAK  4(2Q34) WILD-TYPE     52     53     56     36     35
D37V8, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        37                          52
  CLUS_2                        46                          53
  CLUS_3                        37                          56
  CLUS_4                        34                          36
  CLUS_5                        19                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q34) MUTATED       40     22     60     46
  DEL PEAK  4(2Q34) WILD-TYPE     58     21     74     73
D37V9, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        40                          58
  CLUS_2                        22                          21
  CLUS_3                        60                          74
  CLUS_4                        46                          73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q34) MUTATED       30     24     51     23      4     36
  DEL PEAK  4(2Q34) WILD-TYPE     44     22     42     43     27     48
D37V10, multiclass
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  CLUS_1                        30                          44
  CLUS_2                        24                          22
  CLUS_3                        51                          42
  CLUS_4                        23                          43
  CLUS_5                         4                          27
  CLUS_6                        36                          48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  5(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       51    100     38     19
  DEL PEAK  5(2Q37.1) WILD-TYPE    118     40     21     21
D38V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          51                           118
  CLUS_2                         100                            40
  CLUS_3                          38                            21
  CLUS_4                          19                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       52     75     31     50
  DEL PEAK  5(2Q37.1) WILD-TYPE     86     41     38     35
D38V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          52                            86
  CLUS_2                          75                            41
  CLUS_3                          31                            38
  CLUS_4                          50                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.1) MUTATED       22     13     18      1      9
  DEL PEAK  5(2Q37.1) WILD-TYPE     15     16     16      4     10
D38V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          22                            15
  CLUS_2                          13                            16
  CLUS_3                          18                            16
  CLUS_4                           1                             4
  CLUS_5                           9                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       23     19     15      6
  DEL PEAK  5(2Q37.1) WILD-TYPE     19     19     11     12
D38V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          23                            19
  CLUS_2                          19                            19
  CLUS_3                          15                            11
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED       54    103     48
  DEL PEAK  5(2Q37.1) WILD-TYPE     62     77     60
D38V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          54                            62
  CLUS_2                         103                            77
  CLUS_3                          48                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED       62     66     77
  DEL PEAK  5(2Q37.1) WILD-TYPE     56     46     97
D38V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          62                            56
  CLUS_2                          66                            46
  CLUS_3                          77                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.1) MUTATED       51     60     96
  DEL PEAK  5(2Q37.1) WILD-TYPE     69     36     93
D38V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          51                            69
  CLUS_2                          60                            36
  CLUS_3                          96                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.1) MUTATED       42     59     43     42     21
  DEL PEAK  5(2Q37.1) WILD-TYPE     47     40     50     28     33
D38V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          42                            47
  CLUS_2                          59                            40
  CLUS_3                          43                            50
  CLUS_4                          42                            28
  CLUS_5                          21                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.1) MUTATED       44     26     76     56
  DEL PEAK  5(2Q37.1) WILD-TYPE     54     17     58     63
D38V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          44                            54
  CLUS_2                          26                            17
  CLUS_3                          76                            58
  CLUS_4                          56                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.1) MUTATED       34     27     61     33      9     38
  DEL PEAK  5(2Q37.1) WILD-TYPE     40     19     32     33     22     46
D38V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  CLUS_1                          34                            40
  CLUS_2                          27                            19
  CLUS_3                          61                            32
  CLUS_4                          33                            33
  CLUS_5                           9                            22
  CLUS_6                          38                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       33     54     13     17
  DEL PEAK  6(3P14.2) WILD-TYPE    136     86     46     23
D39V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          33                           136
  CLUS_2                          54                            86
  CLUS_3                          13                            46
  CLUS_4                          17                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       48     30     14     25
  DEL PEAK  6(3P14.2) WILD-TYPE     90     86     55     60
D39V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          48                            90
  CLUS_2                          30                            86
  CLUS_3                          14                            55
  CLUS_4                          25                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        6      9     16      1      9
  DEL PEAK  6(3P14.2) WILD-TYPE     31     20     18      4     10
D39V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           9                            20
  CLUS_3                          16                            18
  CLUS_4                           1                             4
  CLUS_5                           9                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        7     14     10     10
  DEL PEAK  6(3P14.2) WILD-TYPE     35     24     16      8
D39V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          14                            24
  CLUS_3                          10                            16
  CLUS_4                          10                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       22     35     58
  DEL PEAK  6(3P14.2) WILD-TYPE     94    145     50
D39V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          22                            94
  CLUS_2                          35                           145
  CLUS_3                          58                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       27     19     69
  DEL PEAK  6(3P14.2) WILD-TYPE     91     93    105
D39V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          27                            91
  CLUS_2                          19                            93
  CLUS_3                          69                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       33     27     57
  DEL PEAK  6(3P14.2) WILD-TYPE     87     69    132
D39V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          33                            87
  CLUS_2                          27                            69
  CLUS_3                          57                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       42     25     14     25     11
  DEL PEAK  6(3P14.2) WILD-TYPE     47     74     79     45     43
D39V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          42                            47
  CLUS_2                          25                            74
  CLUS_3                          14                            79
  CLUS_4                          25                            45
  CLUS_5                          11                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       47     10     31     27
  DEL PEAK  6(3P14.2) WILD-TYPE     51     33    103     92
D39V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          47                            51
  CLUS_2                          10                            33
  CLUS_3                          31                           103
  CLUS_4                          27                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED       11     12     29     26      1     36
  DEL PEAK  6(3P14.2) WILD-TYPE     63     34     64     40     30     48
D39V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            63
  CLUS_2                          12                            34
  CLUS_3                          29                            64
  CLUS_4                          26                            40
  CLUS_5                           1                            30
  CLUS_6                          36                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  7(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       38     68     34     22
  DEL PEAK  7(4Q22.1) WILD-TYPE    131     72     25     18
D40V1, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          38                           131
  CLUS_2                          68                            72
  CLUS_3                          34                            25
  CLUS_4                          22                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       56     55     19     32
  DEL PEAK  7(4Q22.1) WILD-TYPE     82     61     50     53
D40V2, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          56                            82
  CLUS_2                          55                            61
  CLUS_3                          19                            50
  CLUS_4                          32                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q22.1) MUTATED       15     15     10      2      8
  DEL PEAK  7(4Q22.1) WILD-TYPE     22     14     24      3     11
D40V3, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                          15                            14
  CLUS_3                          10                            24
  CLUS_4                           2                             3
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       14     19     10      7
  DEL PEAK  7(4Q22.1) WILD-TYPE     28     19     16     11
D40V4, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                          19                            19
  CLUS_3                          10                            16
  CLUS_4                           7                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       47     59     53
  DEL PEAK  7(4Q22.1) WILD-TYPE     69    121     55
D40V5, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          47                            69
  CLUS_2                          59                           121
  CLUS_3                          53                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       53     28     78
  DEL PEAK  7(4Q22.1) WILD-TYPE     65     84     96
D40V6, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          53                            65
  CLUS_2                          28                            84
  CLUS_3                          78                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       50     37     75
  DEL PEAK  7(4Q22.1) WILD-TYPE     70     59    114
D40V7, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          50                            70
  CLUS_2                          37                            59
  CLUS_3                          75                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q22.1) MUTATED       48     39     25     28     22
  DEL PEAK  7(4Q22.1) WILD-TYPE     41     60     68     42     32
D40V8, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          48                            41
  CLUS_2                          39                            60
  CLUS_3                          25                            68
  CLUS_4                          28                            42
  CLUS_5                          22                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       48     12     44     52
  DEL PEAK  7(4Q22.1) WILD-TYPE     50     31     90     67
D40V9, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          48                            50
  CLUS_2                          12                            31
  CLUS_3                          44                            90
  CLUS_4                          52                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q22.1) MUTATED       26     15     34     32      6     43
  DEL PEAK  7(4Q22.1) WILD-TYPE     48     31     59     34     25     41
D40V10, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          26                            48
  CLUS_2                          15                            31
  CLUS_3                          34                            59
  CLUS_4                          32                            34
  CLUS_5                           6                            25
  CLUS_6                          43                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK  8(4Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.2) MUTATED       36     81     40     20
  DEL PEAK  8(4Q34.2) WILD-TYPE    133     59     19     20
D41V1, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          36                           133
  CLUS_2                          81                            59
  CLUS_3                          40                            19
  CLUS_4                          20                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.2) MUTATED       56     64     23     34
  DEL PEAK  8(4Q34.2) WILD-TYPE     82     52     46     51
D41V2, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          56                            82
  CLUS_2                          64                            52
  CLUS_3                          23                            46
  CLUS_4                          34                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q34.2) MUTATED       16     14     11      1     10
  DEL PEAK  8(4Q34.2) WILD-TYPE     21     15     23      4      9
D41V3, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          16                            21
  CLUS_2                          14                            15
  CLUS_3                          11                            23
  CLUS_4                           1                             4
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.2) MUTATED       17     18      9      8
  DEL PEAK  8(4Q34.2) WILD-TYPE     25     20     17     10
D41V4, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          17                            25
  CLUS_2                          18                            20
  CLUS_3                           9                            17
  CLUS_4                           8                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.2) MUTATED       49     71     54
  DEL PEAK  8(4Q34.2) WILD-TYPE     67    109     54
D41V5, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          49                            67
  CLUS_2                          71                           109
  CLUS_3                          54                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.2) MUTATED       55     37     82
  DEL PEAK  8(4Q34.2) WILD-TYPE     63     75     92
D41V6, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          55                            63
  CLUS_2                          37                            75
  CLUS_3                          82                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.2) MUTATED       52     48     76
  DEL PEAK  8(4Q34.2) WILD-TYPE     68     48    113
D41V7, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          52                            68
  CLUS_2                          48                            48
  CLUS_3                          76                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q34.2) MUTATED       44     49     29     32     22
  DEL PEAK  8(4Q34.2) WILD-TYPE     45     50     64     38     32
D41V8, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          44                            45
  CLUS_2                          49                            50
  CLUS_3                          29                            64
  CLUS_4                          32                            38
  CLUS_5                          22                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.2) MUTATED       47     17     52     54
  DEL PEAK  8(4Q34.2) WILD-TYPE     51     26     82     65
D41V9, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          47                            51
  CLUS_2                          17                            26
  CLUS_3                          52                            82
  CLUS_4                          54                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q34.2) MUTATED       27     20     45     33      3     42
  DEL PEAK  8(4Q34.2) WILD-TYPE     47     26     48     33     28     42
D41V10, multiclass
        clus
vv       DEL PEAK  8(4Q34.2) MUTATED DEL PEAK  8(4Q34.2) WILD-TYPE
  CLUS_1                          27                            47
  CLUS_2                          20                            26
  CLUS_3                          45                            48
  CLUS_4                          33                            33
  CLUS_5                           3                            28
  CLUS_6                          42                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       44    100     35     23
  DEL PEAK  9(5Q12.1) WILD-TYPE    125     40     24     17
D42V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          44                           125
  CLUS_2                         100                            40
  CLUS_3                          35                            24
  CLUS_4                          23                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       65     76     23     38
  DEL PEAK  9(5Q12.1) WILD-TYPE     73     40     46     47
D42V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          65                            73
  CLUS_2                          76                            40
  CLUS_3                          23                            46
  CLUS_4                          38                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       19     17     19      2     11
  DEL PEAK  9(5Q12.1) WILD-TYPE     18     12     15      3      8
D42V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                            18
  CLUS_2                          17                            12
  CLUS_3                          19                            15
  CLUS_4                           2                             3
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       20     22     14     12
  DEL PEAK  9(5Q12.1) WILD-TYPE     22     16     12      6
D42V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          20                            22
  CLUS_2                          22                            16
  CLUS_3                          14                            12
  CLUS_4                          12                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       62     87     52
  DEL PEAK  9(5Q12.1) WILD-TYPE     54     93     56
D42V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          62                            54
  CLUS_2                          87                            93
  CLUS_3                          52                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       73     46     82
  DEL PEAK  9(5Q12.1) WILD-TYPE     45     66     92
D42V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          73                            45
  CLUS_2                          46                            66
  CLUS_3                          82                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       62     58     82
  DEL PEAK  9(5Q12.1) WILD-TYPE     58     38    107
D42V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          62                            58
  CLUS_2                          58                            38
  CLUS_3                          82                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       42     60     28     43     29
  DEL PEAK  9(5Q12.1) WILD-TYPE     47     39     65     27     25
D42V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          42                            47
  CLUS_2                          60                            39
  CLUS_3                          28                            65
  CLUS_4                          43                            27
  CLUS_5                          29                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       45     28     60     66
  DEL PEAK  9(5Q12.1) WILD-TYPE     53     15     74     53
D42V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          45                            53
  CLUS_2                          28                            15
  CLUS_3                          60                            74
  CLUS_4                          66                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       37     31     50     38      6     37
  DEL PEAK  9(5Q12.1) WILD-TYPE     37     15     43     28     25     47
D42V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          37                            37
  CLUS_2                          31                            15
  CLUS_3                          50                            43
  CLUS_4                          38                            28
  CLUS_5                           6                            25
  CLUS_6                          37                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 10(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       20     49     19     18
  DEL PEAK 10(6P25.3) WILD-TYPE    149     91     40     22
D43V1, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          20                           149
  CLUS_2                          49                            91
  CLUS_3                          19                            40
  CLUS_4                          18                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       26     47     16     17
  DEL PEAK 10(6P25.3) WILD-TYPE    112     69     53     68
D43V2, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          26                           112
  CLUS_2                          47                            69
  CLUS_3                          16                            53
  CLUS_4                          17                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       12      8     11      1      4
  DEL PEAK 10(6P25.3) WILD-TYPE     25     21     23      4     15
D43V3, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                           8                            21
  CLUS_3                          11                            23
  CLUS_4                           1                             4
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       11     11      8      6
  DEL PEAK 10(6P25.3) WILD-TYPE     31     27     18     12
D43V4, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          11                            31
  CLUS_2                          11                            27
  CLUS_3                           8                            18
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       26     52     26
  DEL PEAK 10(6P25.3) WILD-TYPE     90    128     82
D43V5, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          26                            90
  CLUS_2                          52                           128
  CLUS_3                          26                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       42     26     36
  DEL PEAK 10(6P25.3) WILD-TYPE     76     86    138
D43V6, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          42                            76
  CLUS_2                          26                            86
  CLUS_3                          36                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       30     31     44
  DEL PEAK 10(6P25.3) WILD-TYPE     90     65    145
D43V7, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          30                            90
  CLUS_2                          31                            65
  CLUS_3                          44                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       22     30     14     25     14
  DEL PEAK 10(6P25.3) WILD-TYPE     67     69     79     45     40
D43V8, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          22                            67
  CLUS_2                          30                            69
  CLUS_3                          14                            79
  CLUS_4                          25                            45
  CLUS_5                          14                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       19     15     30     39
  DEL PEAK 10(6P25.3) WILD-TYPE     79     28    104     80
D43V9, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          19                            79
  CLUS_2                          15                            28
  CLUS_3                          30                           104
  CLUS_4                          39                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED       17     16     30     20      1     19
  DEL PEAK 10(6P25.3) WILD-TYPE     57     30     63     46     30     65
D43V10, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          17                            57
  CLUS_2                          16                            30
  CLUS_3                          30                            63
  CLUS_4                          20                            46
  CLUS_5                           1                            30
  CLUS_6                          19                            65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 11(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       44     94     25     27
  DEL PEAK 11(6Q21) WILD-TYPE    125     46     34     13
D44V1, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        44                         125
  CLUS_2                        94                          46
  CLUS_3                        25                          34
  CLUS_4                        27                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       54     67     28     41
  DEL PEAK 11(6Q21) WILD-TYPE     84     49     41     44
D44V2, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        54                          84
  CLUS_2                        67                          49
  CLUS_3                        28                          41
  CLUS_4                        41                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q21) MUTATED       17     13     15      2      6
  DEL PEAK 11(6Q21) WILD-TYPE     20     16     19      3     13
D44V3, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        17                          20
  CLUS_2                        13                          16
  CLUS_3                        15                          19
  CLUS_4                         2                           3
  CLUS_5                         6                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       19     19      8      7
  DEL PEAK 11(6Q21) WILD-TYPE     23     19     18     11
D44V4, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        19                          23
  CLUS_2                        19                          19
  CLUS_3                         8                          18
  CLUS_4                         7                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       59     81     48
  DEL PEAK 11(6Q21) WILD-TYPE     57     99     60
D44V5, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        59                          57
  CLUS_2                        81                          99
  CLUS_3                        48                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       65     48     75
  DEL PEAK 11(6Q21) WILD-TYPE     53     64     99
D44V6, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        65                          53
  CLUS_2                        48                          64
  CLUS_3                        75                          99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q21) MUTATED       59     55     75
  DEL PEAK 11(6Q21) WILD-TYPE     61     41    114
D44V7, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        59                          61
  CLUS_2                        55                          41
  CLUS_3                        75                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q21) MUTATED       36     60     27     39     27
  DEL PEAK 11(6Q21) WILD-TYPE     53     39     66     31     27
D44V8, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        36                          53
  CLUS_2                        60                          39
  CLUS_3                        27                          66
  CLUS_4                        39                          31
  CLUS_5                        27                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q21) MUTATED       43     26     59     59
  DEL PEAK 11(6Q21) WILD-TYPE     55     17     75     60
D44V9, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        43                          55
  CLUS_2                        26                          17
  CLUS_3                        59                          75
  CLUS_4                        59                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q21) MUTATED       30     30     54     37      4     32
  DEL PEAK 11(6Q21) WILD-TYPE     44     16     39     29     27     52
D44V10, multiclass
        clus
vv       DEL PEAK 11(6Q21) MUTATED DEL PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        30                          44
  CLUS_2                        30                          16
  CLUS_3                        54                          39
  CLUS_4                        37                          29
  CLUS_5                         4                          27
  CLUS_6                        32                          52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 12(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       43     93     26     28
  DEL PEAK 12(6Q27) WILD-TYPE    126     47     33     12
D45V1, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        43                         126
  CLUS_2                        93                          47
  CLUS_3                        26                          33
  CLUS_4                        28                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       54     67     30     39
  DEL PEAK 12(6Q27) WILD-TYPE     84     49     39     46
D45V2, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        54                          84
  CLUS_2                        67                          49
  CLUS_3                        30                          39
  CLUS_4                        39                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       19     10     16      2      7
  DEL PEAK 12(6Q27) WILD-TYPE     18     19     18      3     12
D45V3, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        19                          18
  CLUS_2                        10                          19
  CLUS_3                        16                          18
  CLUS_4                         2                           3
  CLUS_5                         7                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       20     19      8      7
  DEL PEAK 12(6Q27) WILD-TYPE     22     19     18     11
D45V4, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        20                          22
  CLUS_2                        19                          19
  CLUS_3                         8                          18
  CLUS_4                         7                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       58     85     46
  DEL PEAK 12(6Q27) WILD-TYPE     58     95     62
D45V5, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        58                          58
  CLUS_2                        85                          95
  CLUS_3                        46                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       69     47     73
  DEL PEAK 12(6Q27) WILD-TYPE     49     65    101
D45V6, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        69                          49
  CLUS_2                        47                          65
  CLUS_3                        73                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       58     55     76
  DEL PEAK 12(6Q27) WILD-TYPE     62     41    113
D45V7, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        58                          62
  CLUS_2                        55                          41
  CLUS_3                        76                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       33     57     28     44     27
  DEL PEAK 12(6Q27) WILD-TYPE     56     42     65     26     27
D45V8, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        33                          56
  CLUS_2                        57                          42
  CLUS_3                        28                          65
  CLUS_4                        44                          26
  CLUS_5                        27                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       42     24     60     61
  DEL PEAK 12(6Q27) WILD-TYPE     56     19     74     58
D45V9, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        42                          56
  CLUS_2                        24                          19
  CLUS_3                        60                          74
  CLUS_4                        61                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED       33     28     55     38      3     30
  DEL PEAK 12(6Q27) WILD-TYPE     41     18     38     28     28     54
D45V10, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        33                          41
  CLUS_2                        28                          18
  CLUS_3                        55                          38
  CLUS_4                        38                          28
  CLUS_5                         3                          28
  CLUS_6                        30                          54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 13(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       10     30     11      9
  DEL PEAK 13(7Q36.3) WILD-TYPE    159    110     48     31
D46V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          10                           159
  CLUS_2                          30                           110
  CLUS_3                          11                            48
  CLUS_4                           9                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       18     21      7     14
  DEL PEAK 13(7Q36.3) WILD-TYPE    120     95     62     71
D46V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          18                           120
  CLUS_2                          21                            95
  CLUS_3                           7                            62
  CLUS_4                          14                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED        2      1      8      0      3
  DEL PEAK 13(7Q36.3) WILD-TYPE     35     28     26      5     16
D46V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           1                            28
  CLUS_3                           8                            26
  CLUS_4                           0                             5
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED        3      4      6      1
  DEL PEAK 13(7Q36.3) WILD-TYPE     39     34     20     17
D46V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                           4                            34
  CLUS_3                           6                            20
  CLUS_4                           1                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       13     25     22
  DEL PEAK 13(7Q36.3) WILD-TYPE    103    155     86
D46V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          13                           103
  CLUS_2                          25                           155
  CLUS_3                          22                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       18     13     29
  DEL PEAK 13(7Q36.3) WILD-TYPE    100     99    145
D46V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          18                           100
  CLUS_2                          13                            99
  CLUS_3                          29                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       14     18     28
  DEL PEAK 13(7Q36.3) WILD-TYPE    106     78    161
D46V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                           106
  CLUS_2                          18                            78
  CLUS_3                          28                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED       14     16      7     20      3
  DEL PEAK 13(7Q36.3) WILD-TYPE     75     83     86     50     51
D46V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                            75
  CLUS_2                          16                            83
  CLUS_3                           7                            86
  CLUS_4                          20                            50
  CLUS_5                           3                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       22      6     21     11
  DEL PEAK 13(7Q36.3) WILD-TYPE     76     37    113    108
D46V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          22                            76
  CLUS_2                           6                            37
  CLUS_3                          21                           113
  CLUS_4                          11                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        3      7     20     13      1     16
  DEL PEAK 13(7Q36.3) WILD-TYPE     71     39     73     53     30     68
D46V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           7                            39
  CLUS_3                          20                            73
  CLUS_4                          13                            53
  CLUS_5                           1                            30
  CLUS_6                          16                            68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       64    119     46     13
  DEL PEAK 14(8P23.3) WILD-TYPE    105     21     13     27
D47V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          64                           105
  CLUS_2                         119                            21
  CLUS_3                          46                            13
  CLUS_4                          13                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       88     89     26     39
  DEL PEAK 14(8P23.3) WILD-TYPE     50     27     43     46
D47V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          88                            50
  CLUS_2                          89                            27
  CLUS_3                          26                            43
  CLUS_4                          39                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       17     17     16      4     11
  DEL PEAK 14(8P23.3) WILD-TYPE     20     12     18      1      8
D47V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          17                            20
  CLUS_2                          17                            12
  CLUS_3                          16                            18
  CLUS_4                           4                             1
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       20     24     10     11
  DEL PEAK 14(8P23.3) WILD-TYPE     22     14     16      7
D47V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          20                            22
  CLUS_2                          24                            14
  CLUS_3                          10                            16
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       76     98     67
  DEL PEAK 14(8P23.3) WILD-TYPE     40     82     41
D47V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          76                            40
  CLUS_2                          98                            82
  CLUS_3                          67                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       85     50    106
  DEL PEAK 14(8P23.3) WILD-TYPE     33     62     68
D47V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          85                            33
  CLUS_2                          50                            62
  CLUS_3                         106                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       72     65    103
  DEL PEAK 14(8P23.3) WILD-TYPE     48     31     86
D47V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          72                            48
  CLUS_2                          65                            31
  CLUS_3                         103                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       49     69     44     41     37
  DEL PEAK 14(8P23.3) WILD-TYPE     40     30     49     29     17
D47V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          49                            40
  CLUS_2                          69                            30
  CLUS_3                          44                            49
  CLUS_4                          41                            29
  CLUS_5                          37                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       62     27     69     77
  DEL PEAK 14(8P23.3) WILD-TYPE     36     16     65     42
D47V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          62                            36
  CLUS_2                          27                            16
  CLUS_3                          69                            65
  CLUS_4                          77                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       46     30     59     40      7     53
  DEL PEAK 14(8P23.3) WILD-TYPE     28     16     34     26     24     31
D47V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          46                            28
  CLUS_2                          30                            16
  CLUS_3                          59                            34
  CLUS_4                          40                            26
  CLUS_5                           7                            24
  CLUS_6                          53                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 15(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.3) MUTATED       66    126     46     14
  DEL PEAK 15(8P21.3) WILD-TYPE    103     14     13     26
D48V1, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          66                           103
  CLUS_2                         126                            14
  CLUS_3                          46                            13
  CLUS_4                          14                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.3) MUTATED       90     89     31     42
  DEL PEAK 15(8P21.3) WILD-TYPE     48     27     38     43
D48V2, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          90                            48
  CLUS_2                          89                            27
  CLUS_3                          31                            38
  CLUS_4                          42                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.3) MUTATED       21     18     17      4     13
  DEL PEAK 15(8P21.3) WILD-TYPE     16     11     17      1      6
D48V3, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          21                            16
  CLUS_2                          18                            11
  CLUS_3                          17                            17
  CLUS_4                           4                             1
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.3) MUTATED       24     27     10     12
  DEL PEAK 15(8P21.3) WILD-TYPE     18     11     16      6
D48V4, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          24                            18
  CLUS_2                          27                            11
  CLUS_3                          10                            16
  CLUS_4                          12                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       75    106     70
  DEL PEAK 15(8P21.3) WILD-TYPE     41     74     38
D48V5, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          75                            41
  CLUS_2                         106                            74
  CLUS_3                          70                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       83     57    111
  DEL PEAK 15(8P21.3) WILD-TYPE     35     55     63
D48V6, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          83                            35
  CLUS_2                          57                            55
  CLUS_3                         111                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       70     71    109
  DEL PEAK 15(8P21.3) WILD-TYPE     50     25     80
D48V7, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          70                            50
  CLUS_2                          71                            25
  CLUS_3                         109                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.3) MUTATED       49     75     49     42     35
  DEL PEAK 15(8P21.3) WILD-TYPE     40     24     44     28     19
D48V8, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          49                            40
  CLUS_2                          75                            24
  CLUS_3                          49                            44
  CLUS_4                          42                            28
  CLUS_5                          35                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.3) MUTATED       67     30     74     74
  DEL PEAK 15(8P21.3) WILD-TYPE     31     13     60     45
D48V9, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          67                            31
  CLUS_2                          30                            13
  CLUS_3                          74                            60
  CLUS_4                          74                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P21.3) MUTATED       45     33     64     39      8     56
  DEL PEAK 15(8P21.3) WILD-TYPE     29     13     29     27     23     28
D48V10, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          45                            29
  CLUS_2                          33                            13
  CLUS_3                          64                            29
  CLUS_4                          39                            27
  CLUS_5                           8                            23
  CLUS_6                          56                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       82     75      2     19
  DEL PEAK 16(9P23) WILD-TYPE     87     65     57     21
D49V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        82                          87
  CLUS_2                        75                          65
  CLUS_3                         2                          57
  CLUS_4                        19                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       40     60     37     41
  DEL PEAK 16(9P23) WILD-TYPE     98     56     32     44
D49V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        40                          98
  CLUS_2                        60                          56
  CLUS_3                        37                          32
  CLUS_4                        41                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       21     13     15      4      6
  DEL PEAK 16(9P23) WILD-TYPE     16     16     19      1     13
D49V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        21                          16
  CLUS_2                        13                          16
  CLUS_3                        15                          19
  CLUS_4                         4                           1
  CLUS_5                         6                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       26     16      9      8
  DEL PEAK 16(9P23) WILD-TYPE     16     22     17     10
D49V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        26                          16
  CLUS_2                        16                          22
  CLUS_3                         9                          17
  CLUS_4                         8                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       48     92     38
  DEL PEAK 16(9P23) WILD-TYPE     68     88     70
D49V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        48                          68
  CLUS_2                        92                          88
  CLUS_3                        38                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       62     60     56
  DEL PEAK 16(9P23) WILD-TYPE     56     52    118
D49V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        62                          56
  CLUS_2                        60                          52
  CLUS_3                        56                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       45     52     80
  DEL PEAK 16(9P23) WILD-TYPE     75     44    109
D49V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        45                          75
  CLUS_2                        52                          44
  CLUS_3                        80                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       28     49     38     40     22
  DEL PEAK 16(9P23) WILD-TYPE     61     50     55     30     32
D49V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        28                          61
  CLUS_2                        49                          50
  CLUS_3                        38                          55
  CLUS_4                        40                          30
  CLUS_5                        22                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       22     26     69     56
  DEL PEAK 16(9P23) WILD-TYPE     76     17     65     63
D49V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        22                          76
  CLUS_2                        26                          17
  CLUS_3                        69                          65
  CLUS_4                        56                          63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       27     26     43     37     18     22
  DEL PEAK 16(9P23) WILD-TYPE     47     20     50     29     13     62
D49V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        27                          47
  CLUS_2                        26                          20
  CLUS_3                        43                          50
  CLUS_4                        37                          29
  CLUS_5                        18                          13
  CLUS_6                        22                          62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED      118     89      7     25
  DEL PEAK 17(9P21.3) WILD-TYPE     51     51     52     15
D50V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         118                            51
  CLUS_2                          89                            51
  CLUS_3                           7                            52
  CLUS_4                          25                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       72     70     44     53
  DEL PEAK 17(9P21.3) WILD-TYPE     66     46     25     32
D50V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          72                            66
  CLUS_2                          70                            46
  CLUS_3                          44                            25
  CLUS_4                          53                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       26     15     19      4     13
  DEL PEAK 17(9P21.3) WILD-TYPE     11     14     15      1      6
D50V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          26                            11
  CLUS_2                          15                            14
  CLUS_3                          19                            15
  CLUS_4                           4                             1
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       33     17     14     13
  DEL PEAK 17(9P21.3) WILD-TYPE      9     21     12      5
D50V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          33                             9
  CLUS_2                          17                            21
  CLUS_3                          14                            12
  CLUS_4                          13                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       58    117     63
  DEL PEAK 17(9P21.3) WILD-TYPE     58     63     45
D50V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          58                            58
  CLUS_2                         117                            63
  CLUS_3                          63                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       75     74     89
  DEL PEAK 17(9P21.3) WILD-TYPE     43     38     85
D50V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          75                            43
  CLUS_2                          74                            38
  CLUS_3                          89                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       63     63    110
  DEL PEAK 17(9P21.3) WILD-TYPE     57     33     79
D50V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          63                            57
  CLUS_2                          63                            33
  CLUS_3                         110                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       50     61     53     48     24
  DEL PEAK 17(9P21.3) WILD-TYPE     39     38     40     22     30
D50V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          50                            39
  CLUS_2                          61                            38
  CLUS_3                          53                            40
  CLUS_4                          48                            22
  CLUS_5                          24                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       47     30     86     69
  DEL PEAK 17(9P21.3) WILD-TYPE     51     13     48     50
D50V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          47                            51
  CLUS_2                          30                            13
  CLUS_3                          86                            48
  CLUS_4                          69                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       34     33     52     49     25     39
  DEL PEAK 17(9P21.3) WILD-TYPE     40     13     41     17      6     45
D50V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          34                            40
  CLUS_2                          33                            13
  CLUS_3                          52                            41
  CLUS_4                          49                            17
  CLUS_5                          25                             6
  CLUS_6                          39                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 18(9Q22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9Q22.33) MUTATED       82     67      8     21
  DEL PEAK 18(9Q22.33) WILD-TYPE     87     73     51     19
D51V1, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           82                             87
  CLUS_2                           67                             73
  CLUS_3                            8                             51
  CLUS_4                           21                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9Q22.33) MUTATED       35     61     38     44
  DEL PEAK 18(9Q22.33) WILD-TYPE    103     55     31     41
D51V2, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           35                            103
  CLUS_2                           61                             55
  CLUS_3                           38                             31
  CLUS_4                           44                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q22.33) MUTATED       21     13      9      3      6
  DEL PEAK 18(9Q22.33) WILD-TYPE     16     16     25      2     13
D51V3, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           21                             16
  CLUS_2                           13                             16
  CLUS_3                            9                             25
  CLUS_4                            3                              2
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9Q22.33) MUTATED       26     14      9      3
  DEL PEAK 18(9Q22.33) WILD-TYPE     16     24     17     15
D51V4, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                           14                             24
  CLUS_3                            9                             17
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q22.33) MUTATED       42    107     29
  DEL PEAK 18(9Q22.33) WILD-TYPE     74     73     79
D51V5, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           42                             74
  CLUS_2                          107                             73
  CLUS_3                           29                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q22.33) MUTATED       64     68     46
  DEL PEAK 18(9Q22.33) WILD-TYPE     54     44    128
D51V6, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           64                             54
  CLUS_2                           68                             44
  CLUS_3                           46                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q22.33) MUTATED       39     50     88
  DEL PEAK 18(9Q22.33) WILD-TYPE     81     46    101
D51V7, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           39                             81
  CLUS_2                           50                             46
  CLUS_3                           88                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q22.33) MUTATED       21     45     46     41     24
  DEL PEAK 18(9Q22.33) WILD-TYPE     68     54     47     29     30
D51V8, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           21                             68
  CLUS_2                           45                             54
  CLUS_3                           46                             47
  CLUS_4                           41                             29
  CLUS_5                           24                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9Q22.33) MUTATED       19     25     80     49
  DEL PEAK 18(9Q22.33) WILD-TYPE     79     18     54     70
D51V9, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           19                             79
  CLUS_2                           25                             18
  CLUS_3                           80                             54
  CLUS_4                           49                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q22.33) MUTATED       29     25     48     34     25     12
  DEL PEAK 18(9Q22.33) WILD-TYPE     45     21     45     32      6     72
D51V10, multiclass
        clus
vv       DEL PEAK 18(9Q22.33) MUTATED DEL PEAK 18(9Q22.33) WILD-TYPE
  CLUS_1                           29                             45
  CLUS_2                           25                             21
  CLUS_3                           48                             45
  CLUS_4                           34                             32
  CLUS_5                           25                              6
  CLUS_6                           12                             72
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 19(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10P11.21) MUTATED       25     31     12      6
  DEL PEAK 19(10P11.21) WILD-TYPE    144    109     47     34
D52V1, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            25                             144
  CLUS_2                            31                             109
  CLUS_3                            12                              47
  CLUS_4                             6                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10P11.21) MUTATED       25     22     10     17
  DEL PEAK 19(10P11.21) WILD-TYPE    113     94     59     68
D52V2, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            25                             113
  CLUS_2                            22                              94
  CLUS_3                            10                              59
  CLUS_4                            17                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10P11.21) MUTATED        7      9      9      0      3
  DEL PEAK 19(10P11.21) WILD-TYPE     30     20     25      5     16
D52V3, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                             7                              30
  CLUS_2                             9                              20
  CLUS_3                             9                              25
  CLUS_4                             0                               5
  CLUS_5                             3                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10P11.21) MUTATED        6      8      9      5
  DEL PEAK 19(10P11.21) WILD-TYPE     36     30     17     13
D52V4, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                             8                              30
  CLUS_3                             9                              17
  CLUS_4                             5                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10P11.21) MUTATED       11     31     30
  DEL PEAK 19(10P11.21) WILD-TYPE    105    149     78
D52V5, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            11                             105
  CLUS_2                            31                             149
  CLUS_3                            30                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10P11.21) MUTATED       14     19     39
  DEL PEAK 19(10P11.21) WILD-TYPE    104     93    135
D52V6, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            14                             104
  CLUS_2                            19                              93
  CLUS_3                            39                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10P11.21) MUTATED       24     18     32
  DEL PEAK 19(10P11.21) WILD-TYPE     96     78    157
D52V7, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            24                              96
  CLUS_2                            18                              78
  CLUS_3                            32                             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10P11.21) MUTATED       22     21     10     15      6
  DEL PEAK 19(10P11.21) WILD-TYPE     67     78     83     55     48
D52V8, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            22                              67
  CLUS_2                            21                              78
  CLUS_3                            10                              83
  CLUS_4                            15                              55
  CLUS_5                             6                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10P11.21) MUTATED       23      7     25     17
  DEL PEAK 19(10P11.21) WILD-TYPE     75     36    109    102
D52V9, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                            23                              75
  CLUS_2                             7                              36
  CLUS_3                            25                             109
  CLUS_4                            17                             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10P11.21) MUTATED        9      8     19     12      4     20
  DEL PEAK 19(10P11.21) WILD-TYPE     65     38     74     54     27     64
D52V10, multiclass
        clus
vv       DEL PEAK 19(10P11.21) MUTATED DEL PEAK 19(10P11.21) WILD-TYPE
  CLUS_1                             9                              65
  CLUS_2                             8                              38
  CLUS_3                            19                              74
  CLUS_4                            12                              54
  CLUS_5                             4                              27
  CLUS_6                            20                              64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED       34     80     34     18
  DEL PEAK 20(10Q23.31) WILD-TYPE    135     60     25     22
D53V1, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            34                             135
  CLUS_2                            80                              60
  CLUS_3                            34                              25
  CLUS_4                            18                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED       46     65     23     32
  DEL PEAK 20(10Q23.31) WILD-TYPE     92     51     46     53
D53V2, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            46                              92
  CLUS_2                            65                              51
  CLUS_3                            23                              46
  CLUS_4                            32                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       13     13     12      1     10
  DEL PEAK 20(10Q23.31) WILD-TYPE     24     16     22      4      9
D53V3, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            13                              24
  CLUS_2                            13                              16
  CLUS_3                            12                              22
  CLUS_4                             1                               4
  CLUS_5                            10                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED       13     17     10      9
  DEL PEAK 20(10Q23.31) WILD-TYPE     29     21     16      9
D53V4, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            17                              21
  CLUS_3                            10                              16
  CLUS_4                             9                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       36     81     46
  DEL PEAK 20(10Q23.31) WILD-TYPE     80     99     62
D53V5, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            36                              80
  CLUS_2                            81                              99
  CLUS_3                            46                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       52     43     68
  DEL PEAK 20(10Q23.31) WILD-TYPE     66     69    106
D53V6, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            52                              66
  CLUS_2                            43                              69
  CLUS_3                            68                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       43     43     79
  DEL PEAK 20(10Q23.31) WILD-TYPE     77     53    110
D53V7, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            43                              77
  CLUS_2                            43                              53
  CLUS_3                            79                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       37     41     29     37     21
  DEL PEAK 20(10Q23.31) WILD-TYPE     52     58     64     33     33
D53V8, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            37                              52
  CLUS_2                            41                              58
  CLUS_3                            29                              64
  CLUS_4                            37                              33
  CLUS_5                            21                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q23.31) MUTATED       37     17     61     46
  DEL PEAK 20(10Q23.31) WILD-TYPE     61     26     73     73
D53V9, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            37                              61
  CLUS_2                            17                              26
  CLUS_3                            61                              73
  CLUS_4                            46                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       28     18     50     27      8     30
  DEL PEAK 20(10Q23.31) WILD-TYPE     46     28     43     39     23     54
D53V10, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            28                              46
  CLUS_2                            18                              28
  CLUS_3                            50                              43
  CLUS_4                            27                              39
  CLUS_5                             8                              23
  CLUS_6                            30                              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       66    102     18     25
  DEL PEAK 21(11P15.5) WILD-TYPE    103     38     41     15
D54V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           66                            103
  CLUS_2                          102                             38
  CLUS_3                           18                             41
  CLUS_4                           25                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       51     71     44     45
  DEL PEAK 21(11P15.5) WILD-TYPE     87     45     25     40
D54V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             87
  CLUS_2                           71                             45
  CLUS_3                           44                             25
  CLUS_4                           45                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       22     17     16      1      8
  DEL PEAK 21(11P15.5) WILD-TYPE     15     12     18      4     11
D54V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           22                             15
  CLUS_2                           17                             12
  CLUS_3                           16                             18
  CLUS_4                            1                              4
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       22     24     10      8
  DEL PEAK 21(11P15.5) WILD-TYPE     20     14     16     10
D54V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           22                             20
  CLUS_2                           24                             14
  CLUS_3                           10                             16
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       54    110     44
  DEL PEAK 21(11P15.5) WILD-TYPE     62     70     64
D54V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           54                             62
  CLUS_2                          110                             70
  CLUS_3                           44                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       76     66     66
  DEL PEAK 21(11P15.5) WILD-TYPE     42     46    108
D54V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           76                             42
  CLUS_2                           66                             46
  CLUS_3                           66                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       54     61     95
  DEL PEAK 21(11P15.5) WILD-TYPE     66     35     94
D54V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           54                             66
  CLUS_2                           61                             35
  CLUS_3                           95                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       38     54     47     41     30
  DEL PEAK 21(11P15.5) WILD-TYPE     51     45     46     29     24
D54V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           38                             51
  CLUS_2                           54                             45
  CLUS_3                           47                             46
  CLUS_4                           41                             29
  CLUS_5                           30                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       37     25     75     68
  DEL PEAK 21(11P15.5) WILD-TYPE     61     18     59     51
D54V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           25                             18
  CLUS_3                           75                             59
  CLUS_4                           68                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       40     29     54     37     16     29
  DEL PEAK 21(11P15.5) WILD-TYPE     34     17     39     29     15     55
D54V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           40                             34
  CLUS_2                           29                             17
  CLUS_3                           54                             39
  CLUS_4                           37                             29
  CLUS_5                           16                             15
  CLUS_6                           29                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 22(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.3) MUTATED       50     66     18     21
  DEL PEAK 22(11Q23.3) WILD-TYPE    119     74     41     19
D55V1, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           50                            119
  CLUS_2                           66                             74
  CLUS_3                           18                             41
  CLUS_4                           21                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.3) MUTATED       44     48     23     40
  DEL PEAK 22(11Q23.3) WILD-TYPE     94     68     46     45
D55V2, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           44                             94
  CLUS_2                           48                             68
  CLUS_3                           23                             46
  CLUS_4                           40                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q23.3) MUTATED       14      8     14      2      5
  DEL PEAK 22(11Q23.3) WILD-TYPE     23     21     20      3     14
D55V3, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                            8                             21
  CLUS_3                           14                             20
  CLUS_4                            2                              3
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.3) MUTATED       15     11     11      6
  DEL PEAK 22(11Q23.3) WILD-TYPE     27     27     15     12
D55V4, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                           11                             27
  CLUS_3                           11                             15
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q23.3) MUTATED       34     74     44
  DEL PEAK 22(11Q23.3) WILD-TYPE     82    106     64
D55V5, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           74                            106
  CLUS_3                           44                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q23.3) MUTATED       40     48     64
  DEL PEAK 22(11Q23.3) WILD-TYPE     78     64    110
D55V6, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           40                             78
  CLUS_2                           48                             64
  CLUS_3                           64                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q23.3) MUTATED       43     31     81
  DEL PEAK 22(11Q23.3) WILD-TYPE     77     65    108
D55V7, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           43                             77
  CLUS_2                           31                             65
  CLUS_3                           81                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11Q23.3) MUTATED       40     32     37     31     15
  DEL PEAK 22(11Q23.3) WILD-TYPE     49     67     56     39     39
D55V8, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           40                             49
  CLUS_2                           32                             67
  CLUS_3                           37                             56
  CLUS_4                           31                             39
  CLUS_5                           15                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q23.3) MUTATED       38     13     56     41
  DEL PEAK 22(11Q23.3) WILD-TYPE     60     30     78     78
D55V9, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           38                             60
  CLUS_2                           13                             30
  CLUS_3                           56                             78
  CLUS_4                           41                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q23.3) MUTATED       21     15     38     27     12     35
  DEL PEAK 22(11Q23.3) WILD-TYPE     53     31     55     39     19     49
D55V10, multiclass
        clus
vv       DEL PEAK 22(11Q23.3) MUTATED DEL PEAK 22(11Q23.3) WILD-TYPE
  CLUS_1                           21                             53
  CLUS_2                           15                             31
  CLUS_3                           38                             55
  CLUS_4                           27                             39
  CLUS_5                           12                             19
  CLUS_6                           35                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 23(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       42     65     16     20
  DEL PEAK 23(11Q25) WILD-TYPE    127     75     43     20
D56V1, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         42                          127
  CLUS_2                         65                           75
  CLUS_3                         16                           43
  CLUS_4                         20                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       43     47     19     34
  DEL PEAK 23(11Q25) WILD-TYPE     95     69     50     51
D56V2, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         43                           95
  CLUS_2                         47                           69
  CLUS_3                         19                           50
  CLUS_4                         34                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q25) MUTATED       14      8     11      2      5
  DEL PEAK 23(11Q25) WILD-TYPE     23     21     23      3     14
D56V3, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         14                           23
  CLUS_2                          8                           21
  CLUS_3                         11                           23
  CLUS_4                          2                            3
  CLUS_5                          5                           14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       16     11      7      6
  DEL PEAK 23(11Q25) WILD-TYPE     26     27     19     12
D56V4, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         16                           26
  CLUS_2                         11                           27
  CLUS_3                          7                           19
  CLUS_4                          6                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q25) MUTATED       31     70     40
  DEL PEAK 23(11Q25) WILD-TYPE     85    110     68
D56V5, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         31                           85
  CLUS_2                         70                          110
  CLUS_3                         40                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q25) MUTATED       36     45     60
  DEL PEAK 23(11Q25) WILD-TYPE     82     67    114
D56V6, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         36                           82
  CLUS_2                         45                           67
  CLUS_3                         60                          114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q25) MUTATED       39     30     74
  DEL PEAK 23(11Q25) WILD-TYPE     81     66    115
D56V7, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         39                           81
  CLUS_2                         30                           66
  CLUS_3                         74                          115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q25) MUTATED       35     33     34     29     12
  DEL PEAK 23(11Q25) WILD-TYPE     54     66     59     41     42
D56V8, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         35                           54
  CLUS_2                         33                           66
  CLUS_3                         34                           59
  CLUS_4                         29                           41
  CLUS_5                         12                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q25) MUTATED       34     13     53     36
  DEL PEAK 23(11Q25) WILD-TYPE     64     30     81     83
D56V9, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         34                           64
  CLUS_2                         13                           30
  CLUS_3                         53                           81
  CLUS_4                         36                           83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q25) MUTATED       18     14     39     24     10     31
  DEL PEAK 23(11Q25) WILD-TYPE     56     32     54     42     21     53
D56V10, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         18                           56
  CLUS_2                         14                           32
  CLUS_3                         39                           54
  CLUS_4                         24                           42
  CLUS_5                         10                           21
  CLUS_6                         31                           53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 24(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       19     35      7      7
  DEL PEAK 24(12P13.1) WILD-TYPE    150    105     52     33
D57V1, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           19                            150
  CLUS_2                           35                            105
  CLUS_3                            7                             52
  CLUS_4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED       13     33     11     11
  DEL PEAK 24(12P13.1) WILD-TYPE    125     83     58     74
D57V2, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           13                            125
  CLUS_2                           33                             83
  CLUS_3                           11                             58
  CLUS_4                           11                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED        7      3      4      1      3
  DEL PEAK 24(12P13.1) WILD-TYPE     30     26     30      4     16
D57V3, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                            7                             30
  CLUS_2                            3                             26
  CLUS_3                            4                             30
  CLUS_4                            1                              4
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED        4      6      5      3
  DEL PEAK 24(12P13.1) WILD-TYPE     38     32     21     15
D57V4, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                            6                             32
  CLUS_3                            5                             21
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       21     38      8
  DEL PEAK 24(12P13.1) WILD-TYPE     95    142    100
D57V5, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           21                             95
  CLUS_2                           38                            142
  CLUS_3                            8                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       34     18     15
  DEL PEAK 24(12P13.1) WILD-TYPE     84     94    159
D57V6, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           34                             84
  CLUS_2                           18                             94
  CLUS_3                           15                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       23     17     28
  DEL PEAK 24(12P13.1) WILD-TYPE     97     79    161
D57V7, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           23                             97
  CLUS_2                           17                             79
  CLUS_3                           28                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       13     16     18      9     12
  DEL PEAK 24(12P13.1) WILD-TYPE     76     83     75     61     42
D57V8, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           16                             83
  CLUS_3                           18                             75
  CLUS_4                            9                             61
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12P13.1) MUTATED        7      9     27     24
  DEL PEAK 24(12P13.1) WILD-TYPE     91     34    107     95
D57V9, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                            7                             91
  CLUS_2                            9                             34
  CLUS_3                           27                            107
  CLUS_4                           24                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       18      8     19     10      3      9
  DEL PEAK 24(12P13.1) WILD-TYPE     56     38     74     56     28     75
D57V10, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           18                             56
  CLUS_2                            8                             38
  CLUS_3                           19                             74
  CLUS_4                           10                             56
  CLUS_5                            3                             28
  CLUS_6                            9                             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 25(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       17     41     20     10
  DEL PEAK 25(12Q24.33) WILD-TYPE    152     99     39     30
D58V1, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                             152
  CLUS_2                            41                              99
  CLUS_3                            20                              39
  CLUS_4                            10                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       25     28     19     16
  DEL PEAK 25(12Q24.33) WILD-TYPE    113     88     50     69
D58V2, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            25                             113
  CLUS_2                            28                              88
  CLUS_3                            19                              50
  CLUS_4                            16                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q24.33) MUTATED        5      6      5      1      3
  DEL PEAK 25(12Q24.33) WILD-TYPE     32     23     29      4     16
D58V3, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                             5                              32
  CLUS_2                             6                              23
  CLUS_3                             5                              29
  CLUS_4                             1                               4
  CLUS_5                             3                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED        4      9      5      2
  DEL PEAK 25(12Q24.33) WILD-TYPE     38     29     21     16
D58V4, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                             4                              38
  CLUS_2                             9                              29
  CLUS_3                             5                              21
  CLUS_4                             2                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       26     40     21
  DEL PEAK 25(12Q24.33) WILD-TYPE     90    140     87
D58V5, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            26                              90
  CLUS_2                            40                             140
  CLUS_3                            21                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       27     19     41
  DEL PEAK 25(12Q24.33) WILD-TYPE     91     93    133
D58V6, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            27                              91
  CLUS_2                            19                              93
  CLUS_3                            41                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       26     21     41
  DEL PEAK 25(12Q24.33) WILD-TYPE     94     75    148
D58V7, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            26                              94
  CLUS_2                            21                              75
  CLUS_3                            41                             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q24.33) MUTATED       17     22     22     12     15
  DEL PEAK 25(12Q24.33) WILD-TYPE     72     77     71     58     39
D58V8, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                              72
  CLUS_2                            22                              77
  CLUS_3                            22                              71
  CLUS_4                            12                              58
  CLUS_5                            15                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       21      9     31     25
  DEL PEAK 25(12Q24.33) WILD-TYPE     77     34    103     94
D58V9, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            21                              77
  CLUS_2                             9                              34
  CLUS_3                            31                             103
  CLUS_4                            25                              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       17     10     26     10      3     20
  DEL PEAK 25(12Q24.33) WILD-TYPE     57     36     67     56     28     64
D58V10, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                              57
  CLUS_2                            10                              36
  CLUS_3                            26                              67
  CLUS_4                            10                              56
  CLUS_5                             3                              28
  CLUS_6                            20                              64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 26(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       24     69     43     20
  DEL PEAK 26(13Q14.2) WILD-TYPE    145     71     16     20
D59V1, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           24                            145
  CLUS_2                           69                             71
  CLUS_3                           43                             16
  CLUS_4                           20                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       59     45     19     33
  DEL PEAK 26(13Q14.2) WILD-TYPE     79     71     50     52
D59V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           59                             79
  CLUS_2                           45                             71
  CLUS_3                           19                             50
  CLUS_4                           33                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(13Q14.2) MUTATED       10     13     22      1      5
  DEL PEAK 26(13Q14.2) WILD-TYPE     27     16     12      4     14
D59V3, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           13                             16
  CLUS_3                           22                             12
  CLUS_4                            1                              4
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       11     17     18      5
  DEL PEAK 26(13Q14.2) WILD-TYPE     31     21      8     13
D59V4, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           17                             21
  CLUS_3                           18                              8
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       46     56     51
  DEL PEAK 26(13Q14.2) WILD-TYPE     70    124     57
D59V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           46                             70
  CLUS_2                           56                            124
  CLUS_3                           51                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       43     31     79
  DEL PEAK 26(13Q14.2) WILD-TYPE     75     81     95
D59V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           43                             75
  CLUS_2                           31                             81
  CLUS_3                           79                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       42     36     78
  DEL PEAK 26(13Q14.2) WILD-TYPE     78     60    111
D59V7, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           42                             78
  CLUS_2                           36                             60
  CLUS_3                           78                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(13Q14.2) MUTATED       47     42     21     30     16
  DEL PEAK 26(13Q14.2) WILD-TYPE     42     57     72     40     38
D59V8, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           47                             42
  CLUS_2                           42                             57
  CLUS_3                           21                             72
  CLUS_4                           30                             40
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       52     14     52     36
  DEL PEAK 26(13Q14.2) WILD-TYPE     46     29     82     83
D59V9, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           52                             46
  CLUS_2                           14                             29
  CLUS_3                           52                             82
  CLUS_4                           36                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       17     18     48     21      3     47
  DEL PEAK 26(13Q14.2) WILD-TYPE     57     28     45     45     28     37
D59V10, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           17                             57
  CLUS_2                           18                             28
  CLUS_3                           48                             45
  CLUS_4                           21                             45
  CLUS_5                            3                             28
  CLUS_6                           47                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 27(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       32     83     12     10
  DEL PEAK 27(14Q24.1) WILD-TYPE    137     57     47     30
D60V1, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           32                            137
  CLUS_2                           83                             57
  CLUS_3                           12                             47
  CLUS_4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       35     63     25     14
  DEL PEAK 27(14Q24.1) WILD-TYPE    103     53     44     71
D60V2, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           35                            103
  CLUS_2                           63                             53
  CLUS_3                           25                             44
  CLUS_4                           14                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(14Q24.1) MUTATED       14      5      9      2      6
  DEL PEAK 27(14Q24.1) WILD-TYPE     23     24     25      3     13
D60V3, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                            5                             24
  CLUS_3                            9                             25
  CLUS_4                            2                              3
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       15      8      6      7
  DEL PEAK 27(14Q24.1) WILD-TYPE     27     30     20     11
D60V4, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                            8                             30
  CLUS_3                            6                             20
  CLUS_4                            7                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       37     74     25
  DEL PEAK 27(14Q24.1) WILD-TYPE     79    106     83
D60V5, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           37                             79
  CLUS_2                           74                            106
  CLUS_3                           25                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       64     35     37
  DEL PEAK 27(14Q24.1) WILD-TYPE     54     77    137
D60V6, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           64                             54
  CLUS_2                           35                             77
  CLUS_3                           37                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       37     45     54
  DEL PEAK 27(14Q24.1) WILD-TYPE     83     51    135
D60V7, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           37                             83
  CLUS_2                           45                             51
  CLUS_3                           54                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(14Q24.1) MUTATED       22     40     20     34     20
  DEL PEAK 27(14Q24.1) WILD-TYPE     67     59     73     36     34
D60V8, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             67
  CLUS_2                           40                             59
  CLUS_3                           20                             73
  CLUS_4                           34                             36
  CLUS_5                           20                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       23     23     42     46
  DEL PEAK 27(14Q24.1) WILD-TYPE     75     20     92     73
D60V9, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           23                             75
  CLUS_2                           23                             20
  CLUS_3                           42                             92
  CLUS_4                           46                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       22     22     40     31      3     16
  DEL PEAK 27(14Q24.1) WILD-TYPE     52     24     53     35     28     68
D60V10, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           22                             24
  CLUS_3                           40                             53
  CLUS_4                           31                             35
  CLUS_5                            3                             28
  CLUS_6                           16                             68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 28(15Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q13.1) MUTATED       23     80     39     18
  DEL PEAK 28(15Q13.1) WILD-TYPE    146     60     20     22
D61V1, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           23                            146
  CLUS_2                           80                             60
  CLUS_3                           39                             20
  CLUS_4                           18                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q13.1) MUTATED       55     64     16     25
  DEL PEAK 28(15Q13.1) WILD-TYPE     83     52     53     60
D61V2, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           55                             83
  CLUS_2                           64                             52
  CLUS_3                           16                             53
  CLUS_4                           25                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(15Q13.1) MUTATED       12      9     13      1     11
  DEL PEAK 28(15Q13.1) WILD-TYPE     25     20     21      4      8
D61V3, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                            9                             20
  CLUS_3                           13                             21
  CLUS_4                            1                              4
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q13.1) MUTATED       14     14      9      9
  DEL PEAK 28(15Q13.1) WILD-TYPE     28     24     17      9
D61V4, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           14                             24
  CLUS_3                            9                             17
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q13.1) MUTATED       49     66     42
  DEL PEAK 28(15Q13.1) WILD-TYPE     67    114     66
D61V5, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           49                             67
  CLUS_2                           66                            114
  CLUS_3                           42                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q13.1) MUTATED       51     38     68
  DEL PEAK 28(15Q13.1) WILD-TYPE     67     74    106
D61V6, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           51                             67
  CLUS_2                           38                             74
  CLUS_3                           68                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(15Q13.1) MUTATED       41     50     69
  DEL PEAK 28(15Q13.1) WILD-TYPE     79     46    120
D61V7, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           41                             79
  CLUS_2                           50                             46
  CLUS_3                           69                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(15Q13.1) MUTATED       30     52     21     37     20
  DEL PEAK 28(15Q13.1) WILD-TYPE     59     47     72     33     34
D61V8, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           30                             59
  CLUS_2                           52                             47
  CLUS_3                           21                             72
  CLUS_4                           37                             33
  CLUS_5                           20                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(15Q13.1) MUTATED       43     26     48     40
  DEL PEAK 28(15Q13.1) WILD-TYPE     55     17     86     79
D61V9, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           43                             55
  CLUS_2                           26                             17
  CLUS_3                           48                             86
  CLUS_4                           40                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(15Q13.1) MUTATED       24     26     45     24      1     37
  DEL PEAK 28(15Q13.1) WILD-TYPE     50     20     48     42     30     47
D61V10, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           24                             50
  CLUS_2                           26                             20
  CLUS_3                           45                             48
  CLUS_4                           24                             42
  CLUS_5                            1                             30
  CLUS_6                           37                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 29(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       30     82     45     17
  DEL PEAK 29(16P13.3) WILD-TYPE    139     58     14     23
D62V1, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           30                            139
  CLUS_2                           82                             58
  CLUS_3                           45                             14
  CLUS_4                           17                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       55     65     19     35
  DEL PEAK 29(16P13.3) WILD-TYPE     83     51     50     50
D62V2, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           55                             83
  CLUS_2                           65                             51
  CLUS_3                           19                             50
  CLUS_4                           35                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16P13.3) MUTATED       13     10      9      1     11
  DEL PEAK 29(16P13.3) WILD-TYPE     24     19     25      4      8
D62V3, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                           10                             19
  CLUS_3                            9                             25
  CLUS_4                            1                              4
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       13     13      9      9
  DEL PEAK 29(16P13.3) WILD-TYPE     29     25     17      9
D62V4, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           13                             25
  CLUS_3                            9                             17
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       52     75     47
  DEL PEAK 29(16P13.3) WILD-TYPE     64    105     61
D62V5, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           52                             64
  CLUS_2                           75                            105
  CLUS_3                           47                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       53     41     80
  DEL PEAK 29(16P13.3) WILD-TYPE     65     71     94
D62V6, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           53                             65
  CLUS_2                           41                             71
  CLUS_3                           80                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16P13.3) MUTATED       53     44     76
  DEL PEAK 29(16P13.3) WILD-TYPE     67     52    113
D62V7, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           53                             67
  CLUS_2                           44                             52
  CLUS_3                           76                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16P13.3) MUTATED       39     47     28     37     22
  DEL PEAK 29(16P13.3) WILD-TYPE     50     52     65     33     32
D62V8, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           39                             50
  CLUS_2                           47                             52
  CLUS_3                           28                             65
  CLUS_4                           37                             33
  CLUS_5                           22                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16P13.3) MUTATED       48     18     56     47
  DEL PEAK 29(16P13.3) WILD-TYPE     50     25     78     72
D62V9, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           48                             50
  CLUS_2                           18                             25
  CLUS_3                           56                             78
  CLUS_4                           47                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16P13.3) MUTATED       29     19     46     24      6     45
  DEL PEAK 29(16P13.3) WILD-TYPE     45     27     47     42     25     39
D62V10, multiclass
        clus
vv       DEL PEAK 29(16P13.3) MUTATED DEL PEAK 29(16P13.3) WILD-TYPE
  CLUS_1                           29                             45
  CLUS_2                           19                             27
  CLUS_3                           46                             47
  CLUS_4                           24                             42
  CLUS_5                            6                             25
  CLUS_6                           45                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 30(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       14     50     36     19
  DEL PEAK 30(16Q23.1) WILD-TYPE    155     90     23     21
D63V1, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           14                            155
  CLUS_2                           50                             90
  CLUS_3                           36                             23
  CLUS_4                           19                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       37     46     10     26
  DEL PEAK 30(16Q23.1) WILD-TYPE    101     70     59     59
D63V2, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           37                            101
  CLUS_2                           46                             70
  CLUS_3                           10                             59
  CLUS_4                           26                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q23.1) MUTATED       10      6      7      0      7
  DEL PEAK 30(16Q23.1) WILD-TYPE     27     23     27      5     12
D63V3, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                            6                             23
  CLUS_3                            7                             27
  CLUS_4                            0                              5
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED        9      8      4      9
  DEL PEAK 30(16Q23.1) WILD-TYPE     33     30     22      9
D63V4, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            8                             30
  CLUS_3                            4                             22
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       25     54     39
  DEL PEAK 30(16Q23.1) WILD-TYPE     91    126     69
D63V5, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           25                             91
  CLUS_2                           54                            126
  CLUS_3                           39                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       25     35     58
  DEL PEAK 30(16Q23.1) WILD-TYPE     93     77    116
D63V6, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           25                             93
  CLUS_2                           35                             77
  CLUS_3                           58                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q23.1) MUTATED       27     30     62
  DEL PEAK 30(16Q23.1) WILD-TYPE     93     66    127
D63V7, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           27                             93
  CLUS_2                           30                             66
  CLUS_3                           62                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q23.1) MUTATED       28     32     19     29     11
  DEL PEAK 30(16Q23.1) WILD-TYPE     61     67     74     41     43
D63V8, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           28                             61
  CLUS_2                           32                             67
  CLUS_3                           19                             74
  CLUS_4                           29                             41
  CLUS_5                           11                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q23.1) MUTATED       37     13     39     26
  DEL PEAK 30(16Q23.1) WILD-TYPE     61     30     95     93
D63V9, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           13                             30
  CLUS_3                           39                             95
  CLUS_4                           26                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q23.1) MUTATED       12     15     37     15      2     34
  DEL PEAK 30(16Q23.1) WILD-TYPE     62     31     56     51     29     50
D63V10, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           15                             31
  CLUS_3                           37                             56
  CLUS_4                           15                             51
  CLUS_5                            2                             29
  CLUS_6                           34                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 31(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P12) MUTATED       61     93     26     29
  DEL PEAK 31(17P12) WILD-TYPE    108     47     33     11
D64V1, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         61                          108
  CLUS_2                         93                           47
  CLUS_3                         26                           33
  CLUS_4                         29                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P12) MUTATED       60     76     37     36
  DEL PEAK 31(17P12) WILD-TYPE     78     40     32     49
D64V2, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         60                           78
  CLUS_2                         76                           40
  CLUS_3                         37                           32
  CLUS_4                         36                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED       24     11     19      2      8
  DEL PEAK 31(17P12) WILD-TYPE     13     18     15      3     11
D64V3, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         24                           13
  CLUS_2                         11                           18
  CLUS_3                         19                           15
  CLUS_4                          2                            3
  CLUS_5                          8                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P12) MUTATED       25     17     13      9
  DEL PEAK 31(17P12) WILD-TYPE     17     21     13      9
D64V4, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         25                           17
  CLUS_2                         17                           21
  CLUS_3                         13                           13
  CLUS_4                          9                            9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED       50    103     53
  DEL PEAK 31(17P12) WILD-TYPE     66     77     55
D64V5, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         50                           66
  CLUS_2                        103                           77
  CLUS_3                         53                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED       74     53     79
  DEL PEAK 31(17P12) WILD-TYPE     44     59     95
D64V6, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         74                           44
  CLUS_2                         53                           59
  CLUS_3                         79                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED       58     53     96
  DEL PEAK 31(17P12) WILD-TYPE     62     43     93
D64V7, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         58                           62
  CLUS_2                         53                           43
  CLUS_3                         96                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED       43     51     34     51     28
  DEL PEAK 31(17P12) WILD-TYPE     46     48     59     19     26
D64V8, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         43                           46
  CLUS_2                         51                           48
  CLUS_3                         34                           59
  CLUS_4                         51                           19
  CLUS_5                         28                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17P12) MUTATED       44     24     67     67
  DEL PEAK 31(17P12) WILD-TYPE     54     19     67     52
D64V9, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         44                           54
  CLUS_2                         24                           19
  CLUS_3                         67                           67
  CLUS_4                         67                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17P12) MUTATED       32     26     60     41      7     36
  DEL PEAK 31(17P12) WILD-TYPE     42     20     33     25     24     48
D64V10, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         32                           42
  CLUS_2                         26                           20
  CLUS_3                         60                           33
  CLUS_4                         41                           25
  CLUS_5                          7                           24
  CLUS_6                         36                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 32(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       53     82     28     17
  DEL PEAK 32(18Q23) WILD-TYPE    116     58     31     23
D65V1, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         53                          116
  CLUS_2                         82                           58
  CLUS_3                         28                           31
  CLUS_4                         17                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       59     57     26     38
  DEL PEAK 32(18Q23) WILD-TYPE     79     59     43     47
D65V2, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         59                           79
  CLUS_2                         57                           59
  CLUS_3                         26                           43
  CLUS_4                         38                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       17     15     13      1      8
  DEL PEAK 32(18Q23) WILD-TYPE     20     14     21      4     11
D65V3, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         17                           20
  CLUS_2                         15                           14
  CLUS_3                         13                           21
  CLUS_4                          1                            4
  CLUS_5                          8                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       20     18      9      7
  DEL PEAK 32(18Q23) WILD-TYPE     22     20     17     11
D65V4, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         20                           22
  CLUS_2                         18                           20
  CLUS_3                          9                           17
  CLUS_4                          7                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       53     83     42
  DEL PEAK 32(18Q23) WILD-TYPE     63     97     66
D65V5, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         53                           63
  CLUS_2                         83                           97
  CLUS_3                         42                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       61     43     74
  DEL PEAK 32(18Q23) WILD-TYPE     57     69    100
D65V6, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         61                           57
  CLUS_2                         43                           69
  CLUS_3                         74                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       53     64     62
  DEL PEAK 32(18Q23) WILD-TYPE     67     32    127
D65V7, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         53                           67
  CLUS_2                         64                           32
  CLUS_3                         62                          127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       29     73     29     28     20
  DEL PEAK 32(18Q23) WILD-TYPE     60     26     64     42     34
D65V8, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         29                           60
  CLUS_2                         73                           26
  CLUS_3                         29                           64
  CLUS_4                         28                           42
  CLUS_5                         20                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       42     30     53     53
  DEL PEAK 32(18Q23) WILD-TYPE     56     13     81     66
D65V9, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         42                           56
  CLUS_2                         30                           13
  CLUS_3                         53                           81
  CLUS_4                         53                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(18Q23) MUTATED       33     34     40     25      9     37
  DEL PEAK 32(18Q23) WILD-TYPE     41     12     53     41     22     47
D65V10, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         33                           41
  CLUS_2                         34                           12
  CLUS_3                         40                           53
  CLUS_4                         25                           41
  CLUS_5                          9                           22
  CLUS_6                         37                           47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 33(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       35     74     16     21
  DEL PEAK 33(19P13.3) WILD-TYPE    134     66     43     19
D66V1, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           35                            134
  CLUS_2                           74                             66
  CLUS_3                           16                             43
  CLUS_4                           21                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       48     49     18     31
  DEL PEAK 33(19P13.3) WILD-TYPE     90     67     51     54
D66V2, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           48                             90
  CLUS_2                           49                             67
  CLUS_3                           18                             51
  CLUS_4                           31                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED       16     12     11      2      8
  DEL PEAK 33(19P13.3) WILD-TYPE     21     17     23      3     11
D66V3, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           16                             21
  CLUS_2                           12                             17
  CLUS_3                           11                             23
  CLUS_4                            2                              3
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       17     18      8      6
  DEL PEAK 33(19P13.3) WILD-TYPE     25     20     18     12
D66V4, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                           18                             20
  CLUS_3                            8                             18
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       41     54     49
  DEL PEAK 33(19P13.3) WILD-TYPE     75    126     59
D66V5, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           41                             75
  CLUS_2                           54                            126
  CLUS_3                           49                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       49     25     70
  DEL PEAK 33(19P13.3) WILD-TYPE     69     87    104
D66V6, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           49                             69
  CLUS_2                           25                             87
  CLUS_3                           70                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       37     40     67
  DEL PEAK 33(19P13.3) WILD-TYPE     83     56    122
D66V7, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           37                             83
  CLUS_2                           40                             56
  CLUS_3                           67                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED       35     44     20     29     16
  DEL PEAK 33(19P13.3) WILD-TYPE     54     55     73     41     38
D66V8, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           35                             54
  CLUS_2                           44                             55
  CLUS_3                           20                             73
  CLUS_4                           29                             41
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       41     18     39     43
  DEL PEAK 33(19P13.3) WILD-TYPE     57     25     95     76
D66V9, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           41                             57
  CLUS_2                           18                             25
  CLUS_3                           39                             95
  CLUS_4                           43                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19P13.3) MUTATED       20     19     36     34      2     30
  DEL PEAK 33(19P13.3) WILD-TYPE     54     27     57     32     29     54
D66V10, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           20                             54
  CLUS_2                           19                             27
  CLUS_3                           36                             57
  CLUS_4                           34                             32
  CLUS_5                            2                             29
  CLUS_6                           30                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 34(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.32) MUTATED       27     92     49     19
  DEL PEAK 34(22Q13.32) WILD-TYPE    142     48     10     21
D67V1, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            27                             142
  CLUS_2                            92                              48
  CLUS_3                            49                              10
  CLUS_4                            19                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.32) MUTATED       69     64     18     36
  DEL PEAK 34(22Q13.32) WILD-TYPE     69     52     51     49
D67V2, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            69                              69
  CLUS_2                            64                              52
  CLUS_3                            18                              51
  CLUS_4                            36                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(22Q13.32) MUTATED       15     16     13      1      8
  DEL PEAK 34(22Q13.32) WILD-TYPE     22     13     21      4     11
D67V3, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            15                              22
  CLUS_2                            16                              13
  CLUS_3                            13                              21
  CLUS_4                             1                               4
  CLUS_5                             8                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.32) MUTATED       13     24      8      8
  DEL PEAK 34(22Q13.32) WILD-TYPE     29     14     18     10
D67V4, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            24                              14
  CLUS_3                             8                              18
  CLUS_4                             8                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.32) MUTATED       59     69     55
  DEL PEAK 34(22Q13.32) WILD-TYPE     57    111     53
D67V5, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            59                              57
  CLUS_2                            69                             111
  CLUS_3                            55                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.32) MUTATED       58     35     90
  DEL PEAK 34(22Q13.32) WILD-TYPE     60     77     84
D67V6, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            58                              60
  CLUS_2                            35                              77
  CLUS_3                            90                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.32) MUTATED       56     50     80
  DEL PEAK 34(22Q13.32) WILD-TYPE     64     46    109
D67V7, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            56                              64
  CLUS_2                            50                              46
  CLUS_3                            80                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(22Q13.32) MUTATED       44     55     26     35     26
  DEL PEAK 34(22Q13.32) WILD-TYPE     45     44     67     35     28
D67V8, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            44                              45
  CLUS_2                            55                              44
  CLUS_3                            26                              67
  CLUS_4                            35                              35
  CLUS_5                            26                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.32) MUTATED       58     18     50     57
  DEL PEAK 34(22Q13.32) WILD-TYPE     40     25     84     62
D67V9, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            58                              40
  CLUS_2                            18                              25
  CLUS_3                            50                              84
  CLUS_4                            57                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(22Q13.32) MUTATED       29     19     50     34      1     50
  DEL PEAK 34(22Q13.32) WILD-TYPE     45     27     43     32     30     34
D67V10, multiclass
        clus
vv       DEL PEAK 34(22Q13.32) MUTATED DEL PEAK 34(22Q13.32) WILD-TYPE
  CLUS_1                            29                              45
  CLUS_2                            19                              27
  CLUS_3                            50                              43
  CLUS_4                            34                              32
  CLUS_5                             1                              30
  CLUS_6                            50                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 35(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP11.3) MUTATED       33     30     15     14
  DEL PEAK 35(XP11.3) WILD-TYPE    136    110     44     26
D68V1, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          33                           136
  CLUS_2                          30                           110
  CLUS_3                          15                            44
  CLUS_4                          14                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP11.3) MUTATED       27     28     11     26
  DEL PEAK 35(XP11.3) WILD-TYPE    111     88     58     59
D68V2, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          27                           111
  CLUS_2                          28                            88
  CLUS_3                          11                            58
  CLUS_4                          26                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XP11.3) MUTATED       11      7      8      0      6
  DEL PEAK 35(XP11.3) WILD-TYPE     26     22     26      5     13
D68V3, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                           7                            22
  CLUS_3                           8                            26
  CLUS_4                           0                             5
  CLUS_5                           6                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP11.3) MUTATED       14      9      5      4
  DEL PEAK 35(XP11.3) WILD-TYPE     28     29     21     14
D68V4, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           9                            29
  CLUS_3                           5                            21
  CLUS_4                           4                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP11.3) MUTATED       23     36     32
  DEL PEAK 35(XP11.3) WILD-TYPE     93    144     76
D68V5, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          23                            93
  CLUS_2                          36                           144
  CLUS_3                          32                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP11.3) MUTATED       23     25     43
  DEL PEAK 35(XP11.3) WILD-TYPE     95     87    131
D68V6, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          23                            95
  CLUS_2                          25                            87
  CLUS_3                          43                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP11.3) MUTATED       20     21     51
  DEL PEAK 35(XP11.3) WILD-TYPE    100     75    138
D68V7, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          20                           100
  CLUS_2                          21                            75
  CLUS_3                          51                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XP11.3) MUTATED       25     22     20     18      7
  DEL PEAK 35(XP11.3) WILD-TYPE     64     77     73     52     47
D68V8, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          25                            64
  CLUS_2                          22                            77
  CLUS_3                          20                            73
  CLUS_4                          18                            52
  CLUS_5                           7                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP11.3) MUTATED       23      7     35     24
  DEL PEAK 35(XP11.3) WILD-TYPE     75     36     99     95
D68V9, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          23                            75
  CLUS_2                           7                            36
  CLUS_3                          35                            99
  CLUS_4                          24                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XP11.3) MUTATED       11      6     20     22     11     19
  DEL PEAK 35(XP11.3) WILD-TYPE     63     40     73     44     20     65
D68V10, multiclass
        clus
vv       DEL PEAK 35(XP11.3) MUTATED DEL PEAK 35(XP11.3) WILD-TYPE
  CLUS_1                          11                            63
  CLUS_2                           6                            40
  CLUS_3                          20                            73
  CLUS_4                          22                            44
  CLUS_5                          11                            20
  CLUS_6                          19                            65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 36(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XQ21.33) MUTATED       34     33      7     10
  DEL PEAK 36(XQ21.33) WILD-TYPE    135    107     52     30
D69V1, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           34                            135
  CLUS_2                           33                            107
  CLUS_3                            7                             52
  CLUS_4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XQ21.33) MUTATED       17     32     12     23
  DEL PEAK 36(XQ21.33) WILD-TYPE    121     84     57     62
D69V2, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           17                            121
  CLUS_2                           32                             84
  CLUS_3                           12                             57
  CLUS_4                           23                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XQ21.33) MUTATED        8      6      9      1      4
  DEL PEAK 36(XQ21.33) WILD-TYPE     29     23     25      4     15
D69V3, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                            6                             23
  CLUS_3                            9                             25
  CLUS_4                            1                              4
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XQ21.33) MUTATED        9      7      9      3
  DEL PEAK 36(XQ21.33) WILD-TYPE     33     31     17     15
D69V4, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            7                             31
  CLUS_3                            9                             17
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XQ21.33) MUTATED       14     44     25
  DEL PEAK 36(XQ21.33) WILD-TYPE    102    136     83
D69V5, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           14                            102
  CLUS_2                           44                            136
  CLUS_3                           25                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XQ21.33) MUTATED       21     31     31
  DEL PEAK 36(XQ21.33) WILD-TYPE     97     81    143
D69V6, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           21                             97
  CLUS_2                           31                             81
  CLUS_3                           31                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XQ21.33) MUTATED       17     21     46
  DEL PEAK 36(XQ21.33) WILD-TYPE    103     75    143
D69V7, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           17                            103
  CLUS_2                           21                             75
  CLUS_3                           46                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XQ21.33) MUTATED       19     20     18     22      5
  DEL PEAK 36(XQ21.33) WILD-TYPE     70     79     75     48     49
D69V8, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           19                             70
  CLUS_2                           20                             79
  CLUS_3                           18                             75
  CLUS_4                           22                             48
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XQ21.33) MUTATED       13     11     38     18
  DEL PEAK 36(XQ21.33) WILD-TYPE     85     32     96    101
D69V9, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                           13                             85
  CLUS_2                           11                             32
  CLUS_3                           38                             96
  CLUS_4                           18                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(XQ21.33) MUTATED        7     10     26     16      9     12
  DEL PEAK 36(XQ21.33) WILD-TYPE     67     36     67     50     22     72
D69V10, multiclass
        clus
vv       DEL PEAK 36(XQ21.33) MUTATED DEL PEAK 36(XQ21.33) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                           10                             36
  CLUS_3                           26                             67
  CLUS_4                           16                             50
  CLUS_5                            9                             22
  CLUS_6                           12                             72
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
