This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 118 genes and 10 molecular subtypes across 395 patients, 34 significant findings detected with P value < 0.05 and Q value < 0.25.
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TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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RB1 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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FGFR3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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KDM6A mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
-
STAG2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
ERCC2 mutation correlated to 'CN_CNMF'.
-
CREBBP mutation correlated to 'MIRSEQ_CNMF'.
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NFE2L2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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BAP1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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TFG mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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NFE2L3 mutation correlated to 'METHLYATION_CNMF'.
Table 1. Get Full Table Overview of the association between mutation status of 118 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 34 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
FGFR3 | 56 (14%) | 339 |
1e-05 (0.000983) |
1e-05 (0.000983) |
0.0677 (0.559) |
0.0112 (0.276) |
2e-05 (0.00169) |
1e-05 (0.000983) |
1e-05 (0.000983) |
1e-05 (0.000983) |
1e-05 (0.000983) |
1e-05 (0.000983) |
TP53 | 196 (50%) | 199 |
1e-05 (0.000983) |
1e-05 (0.000983) |
0.03 (0.437) |
0.00619 (0.22) |
0.0172 (0.337) |
2e-05 (0.00169) |
0.293 (0.837) |
0.00501 (0.219) |
0.0202 (0.346) |
4e-05 (0.00295) |
RB1 | 70 (18%) | 325 |
1e-05 (0.000983) |
0.031 (0.441) |
0.72 (1.00) |
0.0748 (0.566) |
3e-05 (0.00236) |
1e-05 (0.000983) |
0.264 (0.808) |
0.14 (0.704) |
0.00325 (0.153) |
1e-05 (0.000983) |
BAP1 | 14 (4%) | 381 |
0.0792 (0.574) |
0.00593 (0.22) |
0.74 (1.00) |
0.469 (0.945) |
0.0969 (0.591) |
0.00568 (0.22) |
0.0119 (0.282) |
0.409 (0.899) |
0.00556 (0.22) |
0.00607 (0.22) |
KDM6A | 103 (26%) | 292 |
0.148 (0.712) |
0.00117 (0.0767) |
0.594 (0.992) |
0.283 (0.829) |
0.00292 (0.145) |
0.0115 (0.276) |
0.479 (0.946) |
0.149 (0.713) |
0.0505 (0.509) |
0.0295 (0.437) |
STAG2 | 56 (14%) | 339 |
0.0297 (0.437) |
0.00354 (0.161) |
0.137 (0.704) |
0.462 (0.945) |
0.412 (0.903) |
0.00635 (0.22) |
0.0448 (0.491) |
0.18 (0.735) |
0.02 (0.346) |
0.047 (0.508) |
NFE2L2 | 24 (6%) | 371 |
0.00018 (0.0125) |
0.0793 (0.574) |
0.257 (0.805) |
0.683 (1.00) |
0.00196 (0.11) |
0.00806 (0.264) |
0.0768 (0.566) |
0.656 (1.00) |
0.39 (0.894) |
0.142 (0.707) |
TFG | 11 (3%) | 384 |
0.543 (0.981) |
0.086 (0.574) |
0.372 (0.892) |
0.0915 (0.577) |
0.00546 (0.22) |
0.0976 (0.591) |
0.178 (0.735) |
0.21 (0.771) |
0.0754 (0.566) |
0.00176 (0.104) |
ERCC2 | 38 (10%) | 357 |
0.00294 (0.145) |
0.0826 (0.574) |
0.0954 (0.591) |
0.0589 (0.53) |
0.798 (1.00) |
0.706 (1.00) |
0.0966 (0.591) |
0.403 (0.896) |
0.284 (0.829) |
0.00936 (0.268) |
CREBBP | 48 (12%) | 347 |
0.444 (0.934) |
0.425 (0.917) |
0.985 (1.00) |
0.159 (0.714) |
0.175 (0.73) |
0.544 (0.981) |
0.00247 (0.132) |
0.0339 (0.442) |
0.0848 (0.574) |
0.463 (0.945) |
NFE2L3 | 14 (4%) | 381 |
0.315 (0.843) |
0.00136 (0.0845) |
0.109 (0.622) |
0.869 (1.00) |
0.65 (1.00) |
0.106 (0.618) |
1 (1.00) |
0.568 (0.981) |
0.879 (1.00) |
0.768 (1.00) |
PIK3CA | 86 (22%) | 309 |
0.329 (0.853) |
0.959 (1.00) |
0.322 (0.853) |
0.729 (1.00) |
0.63 (0.998) |
0.766 (1.00) |
0.939 (1.00) |
0.949 (1.00) |
0.946 (1.00) |
0.602 (0.994) |
CDKN2A | 26 (7%) | 369 |
0.346 (0.864) |
0.0166 (0.333) |
0.416 (0.91) |
0.207 (0.769) |
0.184 (0.743) |
0.45 (0.938) |
0.839 (1.00) |
0.0542 (0.521) |
0.0381 (0.45) |
0.151 (0.714) |
RHOB | 26 (7%) | 369 |
0.0385 (0.45) |
0.241 (0.789) |
0.576 (0.984) |
0.525 (0.981) |
0.376 (0.893) |
0.162 (0.714) |
0.839 (1.00) |
0.639 (1.00) |
0.89 (1.00) |
0.88 (1.00) |
ELF3 | 46 (12%) | 349 |
0.377 (0.893) |
0.104 (0.609) |
0.654 (1.00) |
0.522 (0.981) |
0.0259 (0.419) |
0.0421 (0.469) |
0.28 (0.827) |
0.33 (0.853) |
0.376 (0.893) |
0.608 (0.998) |
TSC1 | 33 (8%) | 362 |
0.333 (0.855) |
0.914 (1.00) |
0.612 (0.998) |
0.567 (0.981) |
0.126 (0.668) |
0.234 (0.785) |
0.144 (0.707) |
0.0658 (0.552) |
0.629 (0.998) |
0.708 (1.00) |
CDKN1A | 35 (9%) | 360 |
0.702 (1.00) |
0.203 (0.76) |
0.731 (1.00) |
0.876 (1.00) |
0.385 (0.893) |
0.356 (0.875) |
0.0292 (0.437) |
0.168 (0.714) |
0.677 (1.00) |
0.598 (0.993) |
EP300 | 61 (15%) | 334 |
0.568 (0.981) |
0.877 (1.00) |
0.384 (0.893) |
0.385 (0.893) |
0.349 (0.866) |
0.31 (0.842) |
0.668 (1.00) |
0.645 (1.00) |
0.335 (0.857) |
0.155 (0.714) |
ARID1A | 97 (25%) | 298 |
0.621 (0.998) |
0.347 (0.865) |
0.456 (0.939) |
0.154 (0.714) |
0.571 (0.981) |
0.782 (1.00) |
0.0752 (0.566) |
0.169 (0.714) |
0.285 (0.831) |
0.0404 (0.46) |
ZFP36L1 | 29 (7%) | 366 |
0.615 (0.998) |
0.469 (0.945) |
0.93 (1.00) |
0.233 (0.785) |
1 (1.00) |
0.331 (0.854) |
1 (1.00) |
0.479 (0.946) |
0.982 (1.00) |
0.0974 (0.591) |
FBXW7 | 32 (8%) | 363 |
0.395 (0.895) |
0.273 (0.814) |
0.276 (0.82) |
0.666 (1.00) |
0.819 (1.00) |
0.25 (0.794) |
0.129 (0.683) |
0.225 (0.783) |
0.0796 (0.574) |
0.157 (0.714) |
HRAS | 17 (4%) | 378 |
0.37 (0.891) |
0.015 (0.322) |
0.0113 (0.276) |
0.233 (0.785) |
0.7 (1.00) |
0.776 (1.00) |
1 (1.00) |
0.297 (0.837) |
0.316 (0.843) |
0.19 (0.743) |
KRAS | 14 (4%) | 381 |
0.0317 (0.442) |
0.773 (1.00) |
0.478 (0.946) |
0.0982 (0.591) |
0.315 (0.843) |
0.404 (0.896) |
0.625 (0.998) |
0.496 (0.964) |
||
RHOA | 18 (5%) | 377 |
0.214 (0.772) |
0.35 (0.868) |
0.18 (0.735) |
0.403 (0.896) |
0.408 (0.899) |
0.483 (0.951) |
0.0515 (0.509) |
0.0896 (0.577) |
0.769 (1.00) |
0.628 (0.998) |
PTEN | 14 (4%) | 381 |
0.887 (1.00) |
0.094 (0.59) |
0.424 (0.917) |
0.432 (0.922) |
0.673 (1.00) |
0.159 (0.714) |
1 (1.00) |
0.96 (1.00) |
0.697 (1.00) |
0.756 (1.00) |
C3ORF70 | 17 (4%) | 378 |
0.682 (1.00) |
0.169 (0.714) |
0.188 (0.743) |
1 (1.00) |
0.95 (1.00) |
0.568 (0.981) |
0.774 (1.00) |
0.534 (0.981) |
0.788 (1.00) |
0.927 (1.00) |
RBM10 | 22 (6%) | 373 |
0.817 (1.00) |
0.199 (0.76) |
0.471 (0.945) |
0.891 (1.00) |
0.562 (0.981) |
0.886 (1.00) |
0.424 (0.917) |
0.805 (1.00) |
0.3 (0.837) |
0.17 (0.717) |
PSIP1 | 20 (5%) | 375 |
0.425 (0.917) |
0.0229 (0.386) |
0.0956 (0.591) |
0.313 (0.843) |
0.171 (0.717) |
0.0165 (0.333) |
0.0505 (0.509) |
0.00971 (0.268) |
0.0353 (0.444) |
0.0179 (0.341) |
ASXL2 | 36 (9%) | 359 |
0.188 (0.743) |
0.544 (0.981) |
0.313 (0.843) |
0.553 (0.981) |
0.619 (0.998) |
0.59 (0.992) |
0.364 (0.886) |
0.542 (0.981) |
0.389 (0.894) |
0.696 (1.00) |
FAT1 | 50 (13%) | 345 |
0.0711 (0.566) |
0.0657 (0.552) |
0.307 (0.84) |
0.714 (1.00) |
0.558 (0.981) |
0.196 (0.754) |
0.106 (0.618) |
0.654 (1.00) |
0.187 (0.743) |
0.0895 (0.577) |
SPTAN1 | 45 (11%) | 350 |
0.327 (0.853) |
0.218 (0.776) |
0.936 (1.00) |
0.168 (0.714) |
0.226 (0.785) |
0.204 (0.761) |
0.239 (0.785) |
0.0767 (0.566) |
0.041 (0.461) |
0.0659 (0.552) |
ZBTB7B | 11 (3%) | 384 |
0.0885 (0.577) |
0.826 (1.00) |
0.396 (0.896) |
0.39 (0.894) |
0.54 (0.981) |
0.399 (0.896) |
0.359 (0.878) |
0.227 (0.785) |
0.474 (0.946) |
0.0181 (0.341) |
CUL1 | 19 (5%) | 376 |
0.631 (0.998) |
0.92 (1.00) |
0.683 (1.00) |
0.156 (0.714) |
0.572 (0.982) |
0.454 (0.939) |
0.409 (0.899) |
0.904 (1.00) |
0.467 (0.945) |
0.581 (0.987) |
KLF5 | 23 (6%) | 372 |
0.139 (0.704) |
0.98 (1.00) |
0.271 (0.814) |
0.306 (0.84) |
0.63 (0.998) |
0.706 (1.00) |
0.49 (0.959) |
0.122 (0.66) |
0.0196 (0.346) |
0.236 (0.785) |
RXRA | 24 (6%) | 371 |
0.0405 (0.46) |
0.00859 (0.268) |
0.141 (0.704) |
0.721 (1.00) |
0.571 (0.981) |
0.26 (0.808) |
0.346 (0.864) |
0.0616 (0.547) |
0.37 (0.891) |
0.0727 (0.566) |
GNA13 | 12 (3%) | 383 |
0.738 (1.00) |
0.267 (0.811) |
0.726 (1.00) |
0.931 (1.00) |
0.0856 (0.574) |
0.368 (0.891) |
0.675 (1.00) |
0.354 (0.873) |
0.0725 (0.566) |
0.809 (1.00) |
METTL3 | 17 (4%) | 378 |
0.236 (0.785) |
0.641 (1.00) |
0.333 (0.855) |
0.222 (0.776) |
0.264 (0.808) |
0.0402 (0.46) |
0.636 (1.00) |
0.283 (0.829) |
||
ERBB3 | 41 (10%) | 354 |
0.312 (0.843) |
0.385 (0.893) |
0.59 (0.992) |
0.398 (0.896) |
0.381 (0.893) |
0.219 (0.776) |
0.791 (1.00) |
0.898 (1.00) |
0.877 (1.00) |
0.688 (1.00) |
RUNX1 | 14 (4%) | 381 |
0.0284 (0.437) |
0.473 (0.946) |
1 (1.00) |
0.19 (0.743) |
0.193 (0.744) |
0.222 (0.776) |
0.621 (0.998) |
0.775 (1.00) |
0.912 (1.00) |
0.62 (0.998) |
MBD1 | 13 (3%) | 382 |
0.0867 (0.574) |
0.979 (1.00) |
0.812 (1.00) |
0.715 (1.00) |
0.593 (0.992) |
0.518 (0.981) |
0.287 (0.832) |
0.553 (0.981) |
0.462 (0.945) |
0.508 (0.979) |
FOXQ1 | 14 (4%) | 381 |
0.541 (0.981) |
0.66 (1.00) |
0.53 (0.981) |
0.264 (0.808) |
0.303 (0.837) |
0.886 (1.00) |
0.935 (1.00) |
0.904 (1.00) |
0.933 (1.00) |
0.985 (1.00) |
RPTN | 15 (4%) | 380 |
0.845 (1.00) |
0.89 (1.00) |
0.0902 (0.577) |
0.329 (0.853) |
1 (1.00) |
1 (1.00) |
0.75 (1.00) |
0.11 (0.622) |
0.865 (1.00) |
0.653 (1.00) |
SF1 | 10 (3%) | 385 |
0.0487 (0.509) |
0.655 (1.00) |
1 (1.00) |
0.189 (0.743) |
0.778 (1.00) |
1 (1.00) |
0.00793 (0.264) |
0.202 (0.76) |
0.167 (0.714) |
0.0148 (0.322) |
DNAH6 | 16 (4%) | 379 |
0.617 (0.998) |
0.103 (0.609) |
0.534 (0.981) |
0.625 (0.998) |
0.00883 (0.268) |
0.0114 (0.276) |
1 (1.00) |
0.0337 (0.442) |
0.056 (0.521) |
0.0167 (0.333) |
ZNF185 | 5 (1%) | 390 |
0.0914 (0.577) |
0.561 (0.981) |
0.612 (0.998) |
0.865 (1.00) |
0.45 (0.938) |
0.181 (0.736) |
0.805 (1.00) |
0.788 (1.00) |
||
ATM | 53 (13%) | 342 |
0.564 (0.981) |
0.687 (1.00) |
0.18 (0.735) |
0.821 (1.00) |
0.618 (0.998) |
0.654 (1.00) |
0.0748 (0.566) |
0.212 (0.771) |
0.223 (0.777) |
0.18 (0.735) |
UNC93B1 | 7 (2%) | 388 |
0.278 (0.824) |
1 (1.00) |
0.556 (0.981) |
0.889 (1.00) |
0.791 (1.00) |
0.959 (1.00) |
0.716 (1.00) |
0.718 (1.00) |
||
UBA52 | 7 (2%) | 388 |
0.49 (0.959) |
0.66 (1.00) |
0.715 (1.00) |
0.213 (0.772) |
0.288 (0.832) |
0.88 (1.00) |
0.835 (1.00) |
0.901 (1.00) |
||
CNOT1 | 21 (5%) | 374 |
0.121 (0.659) |
0.524 (0.981) |
0.415 (0.908) |
0.86 (1.00) |
0.616 (0.998) |
0.451 (0.938) |
0.53 (0.981) |
0.715 (1.00) |
0.95 (1.00) |
0.965 (1.00) |
ERBB2 | 48 (12%) | 347 |
0.432 (0.922) |
0.43 (0.922) |
0.156 (0.714) |
0.408 (0.899) |
0.279 (0.826) |
0.205 (0.763) |
0.759 (1.00) |
0.185 (0.743) |
0.186 (0.743) |
0.288 (0.832) |
FAM47C | 21 (5%) | 374 |
0.556 (0.981) |
0.811 (1.00) |
0.0574 (0.525) |
0.182 (0.738) |
0.212 (0.771) |
0.718 (1.00) |
0.252 (0.797) |
0.165 (0.714) |
0.831 (1.00) |
0.742 (1.00) |
SF3B1 | 24 (6%) | 371 |
0.13 (0.683) |
0.79 (1.00) |
0.267 (0.811) |
0.429 (0.922) |
0.832 (1.00) |
0.615 (0.998) |
0.962 (1.00) |
0.936 (1.00) |
0.22 (0.776) |
0.33 (0.853) |
EPS8 | 14 (4%) | 381 |
0.111 (0.622) |
0.515 (0.981) |
0.782 (1.00) |
0.941 (1.00) |
0.0634 (0.552) |
0.676 (1.00) |
0.192 (0.744) |
0.273 (0.814) |
||
EPHA2 | 19 (5%) | 376 |
0.841 (1.00) |
0.0196 (0.346) |
0.448 (0.938) |
0.938 (1.00) |
0.165 (0.714) |
1 (1.00) |
0.447 (0.936) |
0.16 (0.714) |
0.586 (0.99) |
0.37 (0.891) |
OGDH | 19 (5%) | 376 |
0.0559 (0.521) |
0.247 (0.793) |
0.144 (0.707) |
0.326 (0.853) |
0.677 (1.00) |
0.866 (1.00) |
0.446 (0.936) |
0.315 (0.843) |
0.262 (0.808) |
0.636 (1.00) |
SCARF2 | 8 (2%) | 387 |
0.56 (0.981) |
0.0652 (0.552) |
0.0348 (0.442) |
0.162 (0.714) |
0.661 (1.00) |
0.22 (0.776) |
0.336 (0.857) |
0.569 (0.981) |
||
SSH3 | 15 (4%) | 380 |
0.0182 (0.341) |
0.0955 (0.591) |
0.533 (0.981) |
0.868 (1.00) |
0.0496 (0.509) |
0.398 (0.896) |
0.0699 (0.566) |
0.103 (0.609) |
0.338 (0.858) |
0.256 (0.805) |
HLA-A | 5 (1%) | 390 |
0.906 (1.00) |
0.303 (0.837) |
0.864 (1.00) |
1 (1.00) |
0.722 (1.00) |
0.722 (1.00) |
0.69 (1.00) |
0.495 (0.964) |
||
PARD3 | 23 (6%) | 372 |
0.715 (1.00) |
0.544 (0.981) |
0.824 (1.00) |
0.263 (0.808) |
0.892 (1.00) |
0.762 (1.00) |
0.157 (0.714) |
0.606 (0.998) |
0.534 (0.981) |
0.754 (1.00) |
RIPK4 | 17 (4%) | 378 |
0.531 (0.981) |
0.0747 (0.566) |
1 (1.00) |
1 (1.00) |
0.0505 (0.509) |
0.015 (0.322) |
0.733 (1.00) |
0.779 (1.00) |
0.271 (0.814) |
0.117 (0.648) |
TMCO4 | 12 (3%) | 383 |
0.477 (0.946) |
0.0367 (0.45) |
0.418 (0.912) |
0.073 (0.566) |
0.393 (0.895) |
0.301 (0.837) |
0.0763 (0.566) |
0.0856 (0.574) |
||
CDH1 | 14 (4%) | 381 |
0.574 (0.982) |
0.731 (1.00) |
1 (1.00) |
0.753 (1.00) |
0.94 (1.00) |
0.401 (0.896) |
0.264 (0.808) |
0.0595 (0.532) |
0.603 (0.994) |
0.326 (0.853) |
NRAS | 7 (2%) | 388 |
0.34 (0.86) |
0.47 (0.945) |
0.797 (1.00) |
0.64 (1.00) |
0.13 (0.683) |
0.464 (0.945) |
0.0288 (0.437) |
0.085 (0.574) |
||
ARID1B | 23 (6%) | 372 |
0.00998 (0.268) |
0.214 (0.772) |
0.925 (1.00) |
0.514 (0.981) |
0.0856 (0.574) |
0.0569 (0.525) |
0.0838 (0.574) |
0.0585 (0.53) |
0.391 (0.894) |
0.2 (0.76) |
ZNF511 | 10 (3%) | 385 |
0.554 (0.981) |
0.342 (0.863) |
1 (1.00) |
1 (1.00) |
0.759 (1.00) |
0.148 (0.712) |
0.561 (0.981) |
0.467 (0.945) |
||
FUS | 9 (2%) | 386 |
0.296 (0.837) |
0.799 (1.00) |
0.148 (0.712) |
1 (1.00) |
0.755 (1.00) |
0.359 (0.878) |
0.692 (1.00) |
0.345 (0.864) |
0.959 (1.00) |
0.991 (1.00) |
ASXL1 | 22 (6%) | 373 |
0.135 (0.701) |
0.0376 (0.45) |
0.79 (1.00) |
0.289 (0.832) |
0.642 (1.00) |
0.379 (0.893) |
0.0503 (0.509) |
0.302 (0.837) |
0.453 (0.939) |
0.161 (0.714) |
CNOT3 | 11 (3%) | 384 |
0.1 (0.597) |
0.625 (0.998) |
0.118 (0.648) |
0.803 (1.00) |
0.0911 (0.577) |
0.0895 (0.577) |
1 (1.00) |
0.0674 (0.559) |
0.00969 (0.268) |
0.0135 (0.307) |
ARID2 | 29 (7%) | 366 |
0.378 (0.893) |
0.399 (0.896) |
0.494 (0.963) |
0.263 (0.808) |
0.248 (0.793) |
0.189 (0.743) |
0.0126 (0.292) |
0.308 (0.841) |
0.0195 (0.346) |
0.161 (0.714) |
ZNF773 | 7 (2%) | 388 |
0.59 (0.992) |
0.592 (0.992) |
0.435 (0.923) |
0.501 (0.967) |
0.702 (1.00) |
0.634 (1.00) |
0.189 (0.743) |
0.324 (0.853) |
||
DAZAP1 | 6 (2%) | 389 |
0.741 (1.00) |
0.045 (0.491) |
0.18 (0.735) |
0.0104 (0.274) |
0.209 (0.771) |
0.024 (0.4) |
0.344 (0.864) |
0.428 (0.921) |
||
ADC | 6 (2%) | 389 |
0.855 (1.00) |
0.638 (1.00) |
1 (1.00) |
0.582 (0.987) |
0.773 (1.00) |
0.309 (0.842) |
0.941 (1.00) |
0.707 (1.00) |
||
FUT5 | 3 (1%) | 392 |
1 (1.00) |
0.394 (0.895) |
0.791 (1.00) |
0.111 (0.622) |
0.797 (1.00) |
0.337 (0.857) |
0.847 (1.00) |
0.273 (0.814) |
||
AHR | 22 (6%) | 373 |
0.545 (0.981) |
0.0533 (0.52) |
0.543 (0.981) |
0.211 (0.771) |
0.0644 (0.552) |
0.0755 (0.566) |
0.666 (1.00) |
0.313 (0.843) |
0.531 (0.981) |
0.511 (0.981) |
THRAP3 | 14 (4%) | 381 |
0.564 (0.981) |
0.336 (0.857) |
0.0723 (0.566) |
0.931 (1.00) |
0.836 (1.00) |
0.785 (1.00) |
1 (1.00) |
0.794 (1.00) |
1 (1.00) |
0.902 (1.00) |
TFPI2 | 6 (2%) | 389 |
0.742 (1.00) |
0.85 (1.00) |
0.773 (1.00) |
0.775 (1.00) |
0.67 (1.00) |
0.232 (0.785) |
0.202 (0.76) |
0.546 (0.981) |
||
NPAS4 | 13 (3%) | 382 |
0.249 (0.794) |
0.824 (1.00) |
0.803 (1.00) |
0.865 (1.00) |
0.823 (1.00) |
0.594 (0.992) |
0.549 (0.981) |
0.242 (0.789) |
0.433 (0.922) |
0.557 (0.981) |
TAF11 | 7 (2%) | 388 |
0.787 (1.00) |
0.307 (0.84) |
0.238 (0.785) |
0.886 (1.00) |
0.791 (1.00) |
0.923 (1.00) |
0.527 (0.981) |
0.641 (1.00) |
||
BCL2L1 | 4 (1%) | 391 |
0.0201 (0.346) |
0.0473 (0.508) |
0.296 (0.837) |
0.694 (1.00) |
0.371 (0.891) |
0.404 (0.896) |
0.382 (0.893) |
0.906 (1.00) |
||
TRERF1 | 21 (5%) | 374 |
0.318 (0.847) |
0.928 (1.00) |
0.813 (1.00) |
0.768 (1.00) |
0.956 (1.00) |
0.674 (1.00) |
1 (1.00) |
0.591 (0.992) |
0.74 (1.00) |
0.687 (1.00) |
CHD2 | 25 (6%) | 370 |
0.118 (0.648) |
0.597 (0.993) |
0.905 (1.00) |
0.612 (0.998) |
0.523 (0.981) |
0.629 (0.998) |
0.347 (0.865) |
0.454 (0.939) |
0.374 (0.893) |
0.442 (0.934) |
USP28 | 13 (3%) | 382 |
0.856 (1.00) |
0.653 (1.00) |
0.146 (0.712) |
0.581 (0.987) |
0.718 (1.00) |
1 (1.00) |
0.619 (0.998) |
0.487 (0.958) |
0.95 (1.00) |
0.838 (1.00) |
GPS2 | 10 (3%) | 385 |
0.716 (1.00) |
0.867 (1.00) |
0.478 (0.946) |
0.354 (0.873) |
0.922 (1.00) |
0.558 (0.981) |
0.238 (0.785) |
0.303 (0.837) |
1 (1.00) |
0.955 (1.00) |
F7 | 8 (2%) | 387 |
0.559 (0.981) |
0.421 (0.916) |
0.902 (1.00) |
0.543 (0.981) |
0.893 (1.00) |
0.217 (0.776) |
0.0345 (0.442) |
0.421 (0.916) |
||
IRX4 | 8 (2%) | 387 |
0.325 (0.853) |
0.382 (0.893) |
0.598 (0.993) |
0.443 (0.934) |
0.342 (0.863) |
0.735 (1.00) |
0.732 (1.00) |
0.75 (1.00) |
1 (1.00) |
0.974 (1.00) |
HSP90AA1 | 22 (6%) | 373 |
0.392 (0.895) |
0.96 (1.00) |
0.0858 (0.574) |
0.0348 (0.442) |
0.851 (1.00) |
0.757 (1.00) |
0.0822 (0.574) |
0.159 (0.714) |
1 (1.00) |
0.946 (1.00) |
TTYH1 | 7 (2%) | 388 |
0.789 (1.00) |
0.769 (1.00) |
0.328 (0.853) |
0.212 (0.771) |
0.161 (0.714) |
0.238 (0.785) |
0.201 (0.76) |
0.027 (0.426) |
0.0514 (0.509) |
0.248 (0.793) |
IL10RB | 7 (2%) | 388 |
0.247 (0.793) |
0.833 (1.00) |
0.235 (0.785) |
1 (1.00) |
0.159 (0.714) |
0.889 (1.00) |
1 (1.00) |
0.827 (1.00) |
0.247 (0.793) |
0.884 (1.00) |
THSD4 | 10 (3%) | 385 |
0.744 (1.00) |
0.87 (1.00) |
0.926 (1.00) |
0.467 (0.945) |
0.714 (1.00) |
0.363 (0.885) |
0.141 (0.704) |
0.757 (1.00) |
0.73 (1.00) |
0.246 (0.793) |
DDX3X | 15 (4%) | 380 |
0.562 (0.981) |
0.515 (0.981) |
0.924 (1.00) |
0.687 (1.00) |
1 (1.00) |
0.846 (1.00) |
1 (1.00) |
0.538 (0.981) |
0.269 (0.812) |
0.651 (1.00) |
DGKG | 14 (4%) | 381 |
0.0333 (0.442) |
0.265 (0.808) |
0.295 (0.837) |
0.0655 (0.552) |
0.886 (1.00) |
0.888 (1.00) |
0.124 (0.665) |
0.405 (0.897) |
0.369 (0.891) |
0.0816 (0.574) |
TAS2R9 | 6 (2%) | 389 |
0.0383 (0.45) |
0.236 (0.785) |
0.435 (0.923) |
0.882 (1.00) |
0.491 (0.96) |
0.973 (1.00) |
0.889 (1.00) |
0.858 (1.00) |
||
COL7A1 | 30 (8%) | 365 |
0.236 (0.785) |
0.562 (0.981) |
0.768 (1.00) |
0.301 (0.837) |
0.914 (1.00) |
0.256 (0.805) |
0.221 (0.776) |
0.391 (0.894) |
0.574 (0.982) |
0.637 (1.00) |
ZNF513 | 11 (3%) | 384 |
0.296 (0.837) |
0.972 (1.00) |
0.293 (0.837) |
0.937 (1.00) |
0.456 (0.939) |
0.538 (0.981) |
1 (1.00) |
0.722 (1.00) |
0.916 (1.00) |
0.759 (1.00) |
ACSL5 | 6 (2%) | 389 |
0.852 (1.00) |
0.771 (1.00) |
0.431 (0.922) |
0.0308 (0.441) |
0.282 (0.829) |
0.193 (0.744) |
0.262 (0.808) |
0.234 (0.785) |
||
C18ORF8 | 6 (2%) | 389 |
0.74 (1.00) |
0.143 (0.707) |
0.88 (1.00) |
0.58 (0.987) |
1 (1.00) |
0.524 (0.981) |
0.941 (1.00) |
0.497 (0.964) |
||
PRB2 | 7 (2%) | 388 |
0.0518 (0.509) |
0.111 (0.622) |
0.0558 (0.521) |
0.868 (1.00) |
0.716 (1.00) |
0.564 (0.981) |
0.292 (0.837) |
0.549 (0.981) |
0.682 (1.00) |
0.63 (0.998) |
POU3F1 | 3 (1%) | 392 |
0.141 (0.704) |
0.167 (0.714) |
0.172 (0.718) |
0.79 (1.00) |
0.246 (0.793) |
0.626 (0.998) |
0.0345 (0.442) |
0.119 (0.649) |
||
EZR | 12 (3%) | 383 |
0.303 (0.837) |
0.894 (1.00) |
0.783 (1.00) |
0.719 (1.00) |
0.569 (0.981) |
0.869 (1.00) |
0.703 (1.00) |
0.322 (0.853) |
0.95 (1.00) |
0.744 (1.00) |
ZEB2 | 16 (4%) | 379 |
0.297 (0.837) |
0.122 (0.66) |
0.898 (1.00) |
0.808 (1.00) |
0.596 (0.993) |
0.0244 (0.4) |
0.867 (1.00) |
0.966 (1.00) |
||
C12ORF43 | 8 (2%) | 387 |
0.134 (0.7) |
0.52 (0.981) |
0.166 (0.714) |
0.0863 (0.574) |
1 (1.00) |
0.719 (1.00) |
0.0514 (0.509) |
0.252 (0.797) |
0.527 (0.981) |
0.551 (0.981) |
NAP1L1 | 10 (3%) | 385 |
0.0365 (0.45) |
0.269 (0.812) |
0.556 (0.981) |
0.231 (0.785) |
0.167 (0.714) |
0.0555 (0.521) |
0.475 (0.946) |
0.569 (0.981) |
||
NAALADL1 | 7 (2%) | 388 |
0.706 (1.00) |
0.909 (1.00) |
1 (1.00) |
0.8 (1.00) |
0.701 (1.00) |
0.941 (1.00) |
0.0828 (0.574) |
0.287 (0.832) |
||
DENND5B | 20 (5%) | 375 |
0.387 (0.894) |
0.164 (0.714) |
0.11 (0.622) |
0.0099 (0.268) |
0.137 (0.704) |
0.453 (0.939) |
0.384 (0.893) |
0.872 (1.00) |
0.771 (1.00) |
0.807 (1.00) |
SF3B3 | 21 (5%) | 374 |
0.985 (1.00) |
0.957 (1.00) |
0.151 (0.714) |
0.4 (0.896) |
0.49 (0.959) |
0.2 (0.76) |
0.6 (0.993) |
0.95 (1.00) |
0.849 (1.00) |
0.158 (0.714) |
KIAA1522 | 15 (4%) | 380 |
0.087 (0.574) |
0.793 (1.00) |
0.229 (0.785) |
0.149 (0.713) |
0.141 (0.704) |
0.712 (1.00) |
0.152 (0.714) |
0.0755 (0.566) |
0.586 (0.99) |
0.24 (0.788) |
GTF2I | 16 (4%) | 379 |
0.0092 (0.268) |
0.629 (0.998) |
0.109 (0.622) |
0.671 (1.00) |
0.849 (1.00) |
0.723 (1.00) |
0.517 (0.981) |
0.946 (1.00) |
0.517 (0.981) |
0.146 (0.712) |
MOAP1 | 7 (2%) | 388 |
0.628 (0.998) |
0.236 (0.785) |
0.807 (1.00) |
1 (1.00) |
0.066 (0.552) |
0.639 (1.00) |
0.549 (0.981) |
0.6 (0.993) |
0.866 (1.00) |
0.692 (1.00) |
GAR1 | 4 (1%) | 391 |
0.441 (0.934) |
0.118 (0.648) |
1 (1.00) |
0.693 (1.00) |
0.582 (0.987) |
0.95 (1.00) |
0.55 (0.981) |
0.323 (0.853) |
||
RFTN2 | 11 (3%) | 384 |
0.404 (0.896) |
0.0382 (0.45) |
0.476 (0.946) |
0.193 (0.744) |
0.74 (1.00) |
0.239 (0.785) |
0.927 (1.00) |
0.378 (0.893) |
0.665 (1.00) |
0.056 (0.521) |
ZFP36L2 | 17 (4%) | 378 |
0.523 (0.981) |
0.763 (1.00) |
0.558 (0.981) |
0.656 (1.00) |
0.737 (1.00) |
0.701 (1.00) |
0.819 (1.00) |
0.777 (1.00) |
0.839 (1.00) |
0.771 (1.00) |
GUCY2C | 13 (3%) | 382 |
0.661 (1.00) |
0.733 (1.00) |
0.479 (0.946) |
0.444 (0.934) |
0.769 (1.00) |
0.77 (1.00) |
0.221 (0.776) |
0.993 (1.00) |
0.954 (1.00) |
0.209 (0.771) |
COPZ2 | 3 (1%) | 392 |
0.14 (0.704) |
0.074 (0.566) |
0.257 (0.805) |
0.11 (0.622) |
0.61 (0.998) |
0.468 (0.945) |
||||
ZNF791 | 10 (3%) | 385 |
0.77 (1.00) |
0.805 (1.00) |
0.0153 (0.322) |
0.506 (0.975) |
0.385 (0.893) |
0.169 (0.714) |
0.0806 (0.574) |
0.389 (0.894) |
||
BUD13 | 11 (3%) | 384 |
0.304 (0.837) |
0.2 (0.76) |
0.951 (1.00) |
0.522 (0.981) |
0.462 (0.945) |
0.0993 (0.595) |
0.583 (0.987) |
0.358 (0.878) |
0.5 (0.967) |
0.499 (0.966) |
HES1 | 11 (3%) | 384 |
0.849 (1.00) |
0.825 (1.00) |
0.373 (0.893) |
0.125 (0.666) |
0.63 (0.998) |
0.63 (0.998) |
0.674 (1.00) |
0.47 (0.945) |
0.328 (0.853) |
0.57 (0.981) |
HORMAD1 | 11 (3%) | 384 |
0.033 (0.442) |
0.0266 (0.425) |
0.929 (1.00) |
1 (1.00) |
0.74 (1.00) |
0.464 (0.945) |
0.0319 (0.442) |
0.772 (1.00) |
0.83 (1.00) |
0.917 (1.00) |
SND1 | 9 (2%) | 386 |
0.84 (1.00) |
0.907 (1.00) |
0.648 (1.00) |
0.352 (0.871) |
1 (1.00) |
0.528 (0.981) |
0.757 (1.00) |
0.878 (1.00) |
0.902 (1.00) |
0.978 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S1. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TP53 MUTATED | 42 | 86 | 48 | 19 |
TP53 WILD-TYPE | 120 | 51 | 11 | 15 |
Figure S1. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S2. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TP53 MUTATED | 71 | 73 | 21 | 31 |
TP53 WILD-TYPE | 64 | 39 | 48 | 48 |
Figure S2. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.44
Table S3. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
TP53 MUTATED | 15 | 11 | 25 | 1 | 11 |
TP53 WILD-TYPE | 22 | 18 | 11 | 4 | 9 |
Figure S3. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

P value = 0.00619 (Fisher's exact test), Q value = 0.22
Table S4. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
TP53 MUTATED | 16 | 16 | 21 | 10 |
TP53 WILD-TYPE | 27 | 22 | 6 | 9 |
Figure S4. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.34
Table S5. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TP53 MUTATED | 59 | 73 | 62 |
TP53 WILD-TYPE | 55 | 100 | 42 |
Figure S5. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017
Table S6. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TP53 MUTATED | 60 | 33 | 101 |
TP53 WILD-TYPE | 56 | 73 | 68 |
Figure S6. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.84
Table S7. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TP53 MUTATED | 62 | 41 | 92 |
TP53 WILD-TYPE | 57 | 55 | 85 |
P value = 0.00501 (Fisher's exact test), Q value = 0.22
Table S8. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TP53 MUTATED | 55 | 46 | 33 | 37 | 24 |
TP53 WILD-TYPE | 31 | 53 | 56 | 28 | 29 |
Figure S7. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.35
Table S9. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TP53 MUTATED | 57 | 16 | 55 | 60 |
TP53 WILD-TYPE | 36 | 27 | 72 | 59 |
Figure S8. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029
Table S10. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TP53 MUTATED | 33 | 18 | 49 | 33 | 3 | 52 |
TP53 WILD-TYPE | 41 | 29 | 39 | 32 | 24 | 29 |
Figure S9. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.85
Table S11. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
PIK3CA MUTATED | 37 | 24 | 17 | 8 |
PIK3CA WILD-TYPE | 125 | 113 | 42 | 26 |
P value = 0.959 (Fisher's exact test), Q value = 1
Table S12. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
PIK3CA MUTATED | 30 | 26 | 14 | 16 |
PIK3CA WILD-TYPE | 105 | 86 | 55 | 63 |
P value = 0.322 (Fisher's exact test), Q value = 0.85
Table S13. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
PIK3CA MUTATED | 6 | 6 | 11 | 0 | 2 |
PIK3CA WILD-TYPE | 31 | 23 | 25 | 5 | 18 |
P value = 0.729 (Fisher's exact test), Q value = 1
Table S14. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
PIK3CA MUTATED | 9 | 9 | 5 | 2 |
PIK3CA WILD-TYPE | 34 | 29 | 22 | 17 |
P value = 0.63 (Fisher's exact test), Q value = 1
Table S15. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
PIK3CA MUTATED | 24 | 35 | 26 |
PIK3CA WILD-TYPE | 90 | 138 | 78 |
P value = 0.766 (Fisher's exact test), Q value = 1
Table S16. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
PIK3CA MUTATED | 28 | 22 | 35 |
PIK3CA WILD-TYPE | 88 | 84 | 134 |
P value = 0.939 (Fisher's exact test), Q value = 1
Table S17. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
PIK3CA MUTATED | 25 | 20 | 40 |
PIK3CA WILD-TYPE | 94 | 76 | 137 |
P value = 0.949 (Fisher's exact test), Q value = 1
Table S18. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
PIK3CA MUTATED | 20 | 20 | 18 | 16 | 11 |
PIK3CA WILD-TYPE | 66 | 79 | 71 | 49 | 42 |
P value = 0.946 (Fisher's exact test), Q value = 1
Table S19. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
PIK3CA MUTATED | 22 | 8 | 28 | 26 |
PIK3CA WILD-TYPE | 71 | 35 | 99 | 93 |
P value = 0.602 (Fisher's exact test), Q value = 0.99
Table S20. Gene #2: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
PIK3CA MUTATED | 17 | 8 | 23 | 10 | 7 | 19 |
PIK3CA WILD-TYPE | 57 | 39 | 65 | 55 | 20 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S21. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RB1 MUTATED | 5 | 32 | 29 | 4 |
RB1 WILD-TYPE | 157 | 105 | 30 | 30 |
Figure S10. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.44
Table S22. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RB1 MUTATED | 31 | 14 | 7 | 18 |
RB1 WILD-TYPE | 104 | 98 | 62 | 61 |
Figure S11. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1
Table S23. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RB1 MUTATED | 4 | 6 | 7 | 0 | 3 |
RB1 WILD-TYPE | 33 | 23 | 29 | 5 | 17 |
P value = 0.0748 (Fisher's exact test), Q value = 0.57
Table S24. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RB1 MUTATED | 3 | 7 | 8 | 2 |
RB1 WILD-TYPE | 40 | 31 | 19 | 17 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0024
Table S25. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RB1 MUTATED | 31 | 14 | 23 |
RB1 WILD-TYPE | 83 | 159 | 81 |
Figure S12. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S26. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RB1 MUTATED | 16 | 6 | 46 |
RB1 WILD-TYPE | 100 | 100 | 123 |
Figure S13. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.81
Table S27. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RB1 MUTATED | 21 | 12 | 36 |
RB1 WILD-TYPE | 98 | 84 | 141 |
P value = 0.14 (Fisher's exact test), Q value = 0.7
Table S28. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RB1 MUTATED | 23 | 18 | 13 | 8 | 7 |
RB1 WILD-TYPE | 63 | 81 | 76 | 57 | 46 |
P value = 0.00325 (Fisher's exact test), Q value = 0.15
Table S29. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RB1 MUTATED | 29 | 5 | 17 | 17 |
RB1 WILD-TYPE | 64 | 38 | 110 | 102 |
Figure S14. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S30. Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RB1 MUTATED | 10 | 4 | 16 | 7 | 0 | 31 |
RB1 WILD-TYPE | 64 | 43 | 72 | 58 | 27 | 50 |
Figure S15. Get High-res Image Gene #3: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S31. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FGFR3 MUTATED | 43 | 7 | 2 | 4 |
FGFR3 WILD-TYPE | 119 | 130 | 57 | 30 |
Figure S16. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S32. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FGFR3 MUTATED | 8 | 9 | 22 | 17 |
FGFR3 WILD-TYPE | 127 | 103 | 47 | 62 |
Figure S17. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.56
Table S33. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FGFR3 MUTATED | 9 | 2 | 4 | 0 | 0 |
FGFR3 WILD-TYPE | 28 | 27 | 32 | 5 | 20 |
P value = 0.0112 (Fisher's exact test), Q value = 0.28
Table S34. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FGFR3 MUTATED | 9 | 0 | 4 | 2 |
FGFR3 WILD-TYPE | 34 | 38 | 23 | 17 |
Figure S18. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0017
Table S35. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FGFR3 MUTATED | 6 | 40 | 9 |
FGFR3 WILD-TYPE | 108 | 133 | 95 |
Figure S19. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S36. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FGFR3 MUTATED | 6 | 38 | 11 |
FGFR3 WILD-TYPE | 110 | 68 | 158 |
Figure S20. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S37. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FGFR3 MUTATED | 5 | 9 | 42 |
FGFR3 WILD-TYPE | 114 | 87 | 135 |
Figure S21. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S38. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FGFR3 MUTATED | 7 | 7 | 32 | 9 | 1 |
FGFR3 WILD-TYPE | 79 | 92 | 57 | 56 | 52 |
Figure S22. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S39. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FGFR3 MUTATED | 3 | 2 | 36 | 11 |
FGFR3 WILD-TYPE | 90 | 41 | 91 | 108 |
Figure S23. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098
Table S40. Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FGFR3 MUTATED | 4 | 2 | 15 | 8 | 20 | 3 |
FGFR3 WILD-TYPE | 70 | 45 | 73 | 57 | 7 | 78 |
Figure S24. Get High-res Image Gene #4: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.86
Table S41. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CDKN2A MUTATED | 11 | 6 | 5 | 4 |
CDKN2A WILD-TYPE | 151 | 131 | 54 | 30 |
P value = 0.0166 (Fisher's exact test), Q value = 0.33
Table S42. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CDKN2A MUTATED | 11 | 6 | 0 | 9 |
CDKN2A WILD-TYPE | 124 | 106 | 69 | 70 |
Figure S25. Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.91
Table S43. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CDKN2A MUTATED | 2 | 0 | 4 | 0 | 1 |
CDKN2A WILD-TYPE | 35 | 29 | 32 | 5 | 19 |
P value = 0.207 (Fisher's exact test), Q value = 0.77
Table S44. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CDKN2A MUTATED | 3 | 0 | 2 | 2 |
CDKN2A WILD-TYPE | 40 | 38 | 25 | 17 |
P value = 0.184 (Fisher's exact test), Q value = 0.74
Table S45. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CDKN2A MUTATED | 5 | 10 | 11 |
CDKN2A WILD-TYPE | 109 | 163 | 93 |
P value = 0.45 (Fisher's exact test), Q value = 0.94
Table S46. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CDKN2A MUTATED | 5 | 7 | 14 |
CDKN2A WILD-TYPE | 111 | 99 | 155 |
P value = 0.839 (Fisher's exact test), Q value = 1
Table S47. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CDKN2A MUTATED | 8 | 5 | 13 |
CDKN2A WILD-TYPE | 111 | 91 | 164 |
P value = 0.0542 (Fisher's exact test), Q value = 0.52
Table S48. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CDKN2A MUTATED | 11 | 5 | 3 | 6 | 1 |
CDKN2A WILD-TYPE | 75 | 94 | 86 | 59 | 52 |
P value = 0.0381 (Fisher's exact test), Q value = 0.45
Table S49. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CDKN2A MUTATED | 11 | 0 | 8 | 5 |
CDKN2A WILD-TYPE | 82 | 43 | 119 | 114 |
Figure S26. Get High-res Image Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.71
Table S50. Gene #5: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CDKN2A MUTATED | 1 | 2 | 5 | 6 | 1 | 9 |
CDKN2A WILD-TYPE | 73 | 45 | 83 | 59 | 26 | 72 |
P value = 0.0385 (Fisher's exact test), Q value = 0.45
Table S51. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RHOB MUTATED | 5 | 15 | 3 | 3 |
RHOB WILD-TYPE | 157 | 122 | 56 | 31 |
Figure S27. Get High-res Image Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.79
Table S52. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RHOB MUTATED | 8 | 12 | 3 | 3 |
RHOB WILD-TYPE | 127 | 100 | 66 | 76 |
P value = 0.576 (Fisher's exact test), Q value = 0.98
Table S53. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RHOB MUTATED | 2 | 1 | 4 | 0 | 0 |
RHOB WILD-TYPE | 35 | 28 | 32 | 5 | 20 |
P value = 0.525 (Fisher's exact test), Q value = 0.98
Table S54. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RHOB MUTATED | 2 | 2 | 3 | 0 |
RHOB WILD-TYPE | 41 | 36 | 24 | 19 |
P value = 0.376 (Fisher's exact test), Q value = 0.89
Table S55. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RHOB MUTATED | 5 | 15 | 6 |
RHOB WILD-TYPE | 109 | 158 | 98 |
P value = 0.162 (Fisher's exact test), Q value = 0.71
Table S56. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RHOB MUTATED | 11 | 8 | 7 |
RHOB WILD-TYPE | 105 | 98 | 162 |
P value = 0.839 (Fisher's exact test), Q value = 1
Table S57. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RHOB MUTATED | 8 | 5 | 13 |
RHOB WILD-TYPE | 111 | 91 | 164 |
P value = 0.639 (Fisher's exact test), Q value = 1
Table S58. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RHOB MUTATED | 5 | 5 | 9 | 3 | 4 |
RHOB WILD-TYPE | 81 | 94 | 80 | 62 | 49 |
P value = 0.89 (Fisher's exact test), Q value = 1
Table S59. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RHOB MUTATED | 5 | 2 | 10 | 8 |
RHOB WILD-TYPE | 88 | 41 | 117 | 111 |
P value = 0.88 (Fisher's exact test), Q value = 1
Table S60. Gene #6: 'RHOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RHOB MUTATED | 5 | 3 | 5 | 5 | 3 | 4 |
RHOB WILD-TYPE | 69 | 44 | 83 | 60 | 24 | 77 |
P value = 0.377 (Fisher's exact test), Q value = 0.89
Table S61. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ELF3 MUTATED | 19 | 15 | 5 | 7 |
ELF3 WILD-TYPE | 143 | 122 | 54 | 27 |
P value = 0.104 (Fisher's exact test), Q value = 0.61
Table S62. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ELF3 MUTATED | 9 | 18 | 8 | 11 |
ELF3 WILD-TYPE | 126 | 94 | 61 | 68 |
P value = 0.654 (Fisher's exact test), Q value = 1
Table S63. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ELF3 MUTATED | 4 | 3 | 3 | 0 | 0 |
ELF3 WILD-TYPE | 33 | 26 | 33 | 5 | 20 |
P value = 0.522 (Fisher's exact test), Q value = 0.98
Table S64. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ELF3 MUTATED | 3 | 4 | 3 | 0 |
ELF3 WILD-TYPE | 40 | 34 | 24 | 19 |
P value = 0.0259 (Fisher's exact test), Q value = 0.42
Table S65. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ELF3 MUTATED | 7 | 28 | 10 |
ELF3 WILD-TYPE | 107 | 145 | 94 |
Figure S28. Get High-res Image Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.47
Table S66. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ELF3 MUTATED | 16 | 17 | 12 |
ELF3 WILD-TYPE | 100 | 89 | 157 |
Figure S29. Get High-res Image Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.83
Table S67. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ELF3 MUTATED | 10 | 15 | 21 |
ELF3 WILD-TYPE | 109 | 81 | 156 |
P value = 0.33 (Fisher's exact test), Q value = 0.85
Table S68. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ELF3 MUTATED | 7 | 15 | 8 | 11 | 5 |
ELF3 WILD-TYPE | 79 | 84 | 81 | 54 | 48 |
P value = 0.376 (Fisher's exact test), Q value = 0.89
Table S69. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ELF3 MUTATED | 8 | 8 | 16 | 13 |
ELF3 WILD-TYPE | 85 | 35 | 111 | 106 |
P value = 0.608 (Fisher's exact test), Q value = 1
Table S70. Gene #7: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ELF3 MUTATED | 7 | 7 | 12 | 10 | 3 | 6 |
ELF3 WILD-TYPE | 67 | 40 | 76 | 55 | 24 | 75 |
P value = 0.333 (Fisher's exact test), Q value = 0.86
Table S71. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TSC1 MUTATED | 18 | 11 | 2 | 2 |
TSC1 WILD-TYPE | 144 | 126 | 57 | 32 |
P value = 0.914 (Fisher's exact test), Q value = 1
Table S72. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TSC1 MUTATED | 10 | 9 | 7 | 7 |
TSC1 WILD-TYPE | 125 | 103 | 62 | 72 |
P value = 0.612 (Fisher's exact test), Q value = 1
Table S73. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
TSC1 MUTATED | 6 | 2 | 2 | 0 | 2 |
TSC1 WILD-TYPE | 31 | 27 | 34 | 5 | 18 |
P value = 0.567 (Fisher's exact test), Q value = 0.98
Table S74. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
TSC1 MUTATED | 6 | 3 | 1 | 2 |
TSC1 WILD-TYPE | 37 | 35 | 26 | 17 |
P value = 0.126 (Fisher's exact test), Q value = 0.67
Table S75. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TSC1 MUTATED | 12 | 17 | 4 |
TSC1 WILD-TYPE | 102 | 156 | 100 |
P value = 0.234 (Fisher's exact test), Q value = 0.79
Table S76. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TSC1 MUTATED | 11 | 12 | 10 |
TSC1 WILD-TYPE | 105 | 94 | 159 |
P value = 0.144 (Fisher's exact test), Q value = 0.71
Table S77. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TSC1 MUTATED | 10 | 12 | 10 |
TSC1 WILD-TYPE | 109 | 84 | 167 |
P value = 0.0658 (Fisher's exact test), Q value = 0.55
Table S78. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TSC1 MUTATED | 4 | 13 | 6 | 2 | 7 |
TSC1 WILD-TYPE | 82 | 86 | 83 | 63 | 46 |
P value = 0.629 (Fisher's exact test), Q value = 1
Table S79. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TSC1 MUTATED | 5 | 3 | 12 | 12 |
TSC1 WILD-TYPE | 88 | 40 | 115 | 107 |
P value = 0.708 (Fisher's exact test), Q value = 1
Table S80. Gene #8: 'TSC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TSC1 MUTATED | 7 | 3 | 8 | 8 | 2 | 4 |
TSC1 WILD-TYPE | 67 | 44 | 80 | 57 | 25 | 77 |
P value = 0.148 (Fisher's exact test), Q value = 0.71
Table S81. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
KDM6A MUTATED | 42 | 38 | 10 | 13 |
KDM6A WILD-TYPE | 120 | 99 | 49 | 21 |
P value = 0.00117 (Fisher's exact test), Q value = 0.077
Table S82. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
KDM6A MUTATED | 25 | 36 | 28 | 14 |
KDM6A WILD-TYPE | 110 | 76 | 41 | 65 |
Figure S30. Get High-res Image Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.99
Table S83. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
KDM6A MUTATED | 9 | 5 | 10 | 2 | 3 |
KDM6A WILD-TYPE | 28 | 24 | 26 | 3 | 17 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S84. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
KDM6A MUTATED | 9 | 7 | 10 | 3 |
KDM6A WILD-TYPE | 34 | 31 | 17 | 16 |
P value = 0.00292 (Fisher's exact test), Q value = 0.14
Table S85. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
KDM6A MUTATED | 18 | 58 | 26 |
KDM6A WILD-TYPE | 96 | 115 | 78 |
Figure S31. Get High-res Image Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.28
Table S86. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
KDM6A MUTATED | 31 | 38 | 33 |
KDM6A WILD-TYPE | 85 | 68 | 136 |
Figure S32. Get High-res Image Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.95
Table S87. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
KDM6A MUTATED | 26 | 25 | 50 |
KDM6A WILD-TYPE | 93 | 71 | 127 |
P value = 0.149 (Fisher's exact test), Q value = 0.71
Table S88. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
KDM6A MUTATED | 19 | 23 | 30 | 20 | 9 |
KDM6A WILD-TYPE | 67 | 76 | 59 | 45 | 44 |
P value = 0.0505 (Fisher's exact test), Q value = 0.51
Table S89. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
KDM6A MUTATED | 18 | 14 | 41 | 24 |
KDM6A WILD-TYPE | 75 | 29 | 86 | 95 |
P value = 0.0295 (Fisher's exact test), Q value = 0.44
Table S90. Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
KDM6A MUTATED | 17 | 15 | 27 | 10 | 12 | 16 |
KDM6A WILD-TYPE | 57 | 32 | 61 | 55 | 15 | 65 |
Figure S33. Get High-res Image Gene #9: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1
Table S91. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CDKN1A MUTATED | 18 | 10 | 5 | 2 |
CDKN1A WILD-TYPE | 144 | 127 | 54 | 32 |
P value = 0.203 (Fisher's exact test), Q value = 0.76
Table S92. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CDKN1A MUTATED | 10 | 9 | 4 | 12 |
CDKN1A WILD-TYPE | 125 | 103 | 65 | 67 |
P value = 0.731 (Fisher's exact test), Q value = 1
Table S93. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CDKN1A MUTATED | 6 | 4 | 5 | 1 | 1 |
CDKN1A WILD-TYPE | 31 | 25 | 31 | 4 | 19 |
P value = 0.876 (Fisher's exact test), Q value = 1
Table S94. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CDKN1A MUTATED | 7 | 4 | 4 | 2 |
CDKN1A WILD-TYPE | 36 | 34 | 23 | 17 |
P value = 0.385 (Fisher's exact test), Q value = 0.89
Table S95. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CDKN1A MUTATED | 8 | 19 | 7 |
CDKN1A WILD-TYPE | 106 | 154 | 97 |
P value = 0.356 (Fisher's exact test), Q value = 0.87
Table S96. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CDKN1A MUTATED | 11 | 12 | 11 |
CDKN1A WILD-TYPE | 105 | 94 | 158 |
P value = 0.0292 (Fisher's exact test), Q value = 0.44
Table S97. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CDKN1A MUTATED | 5 | 14 | 16 |
CDKN1A WILD-TYPE | 114 | 82 | 161 |
Figure S34. Get High-res Image Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.71
Table S98. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CDKN1A MUTATED | 4 | 13 | 10 | 6 | 2 |
CDKN1A WILD-TYPE | 82 | 86 | 79 | 59 | 51 |
P value = 0.677 (Fisher's exact test), Q value = 1
Table S99. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CDKN1A MUTATED | 6 | 5 | 13 | 10 |
CDKN1A WILD-TYPE | 87 | 38 | 114 | 109 |
P value = 0.598 (Fisher's exact test), Q value = 0.99
Table S100. Gene #10: 'CDKN1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CDKN1A MUTATED | 4 | 6 | 8 | 6 | 4 | 6 |
CDKN1A WILD-TYPE | 70 | 41 | 80 | 59 | 23 | 75 |
P value = 0.568 (Fisher's exact test), Q value = 0.98
Table S101. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
EP300 MUTATED | 22 | 23 | 12 | 4 |
EP300 WILD-TYPE | 140 | 114 | 47 | 30 |
P value = 0.877 (Fisher's exact test), Q value = 1
Table S102. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
EP300 MUTATED | 23 | 16 | 9 | 13 |
EP300 WILD-TYPE | 112 | 96 | 60 | 66 |
P value = 0.384 (Fisher's exact test), Q value = 0.89
Table S103. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
EP300 MUTATED | 4 | 3 | 5 | 2 | 4 |
EP300 WILD-TYPE | 33 | 26 | 31 | 3 | 16 |
P value = 0.385 (Fisher's exact test), Q value = 0.89
Table S104. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
EP300 MUTATED | 8 | 3 | 3 | 4 |
EP300 WILD-TYPE | 35 | 35 | 24 | 15 |
P value = 0.349 (Fisher's exact test), Q value = 0.87
Table S105. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
EP300 MUTATED | 20 | 22 | 19 |
EP300 WILD-TYPE | 94 | 151 | 85 |
P value = 0.31 (Fisher's exact test), Q value = 0.84
Table S106. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
EP300 MUTATED | 18 | 12 | 31 |
EP300 WILD-TYPE | 98 | 94 | 138 |
P value = 0.668 (Fisher's exact test), Q value = 1
Table S107. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
EP300 MUTATED | 17 | 13 | 31 |
EP300 WILD-TYPE | 102 | 83 | 146 |
P value = 0.645 (Fisher's exact test), Q value = 1
Table S108. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
EP300 MUTATED | 9 | 16 | 15 | 12 | 9 |
EP300 WILD-TYPE | 77 | 83 | 74 | 53 | 44 |
P value = 0.335 (Fisher's exact test), Q value = 0.86
Table S109. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
EP300 MUTATED | 19 | 5 | 20 | 14 |
EP300 WILD-TYPE | 74 | 38 | 107 | 105 |
P value = 0.155 (Fisher's exact test), Q value = 0.71
Table S110. Gene #11: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
EP300 MUTATED | 9 | 4 | 16 | 8 | 2 | 19 |
EP300 WILD-TYPE | 65 | 43 | 72 | 57 | 25 | 62 |
P value = 0.621 (Fisher's exact test), Q value = 1
Table S111. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ARID1A MUTATED | 35 | 38 | 16 | 8 |
ARID1A WILD-TYPE | 127 | 99 | 43 | 26 |
P value = 0.347 (Fisher's exact test), Q value = 0.86
Table S112. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ARID1A MUTATED | 28 | 34 | 15 | 20 |
ARID1A WILD-TYPE | 107 | 78 | 54 | 59 |
P value = 0.456 (Fisher's exact test), Q value = 0.94
Table S113. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ARID1A MUTATED | 12 | 8 | 6 | 2 | 4 |
ARID1A WILD-TYPE | 25 | 21 | 30 | 3 | 16 |
P value = 0.154 (Fisher's exact test), Q value = 0.71
Table S114. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ARID1A MUTATED | 11 | 14 | 5 | 2 |
ARID1A WILD-TYPE | 32 | 24 | 22 | 17 |
P value = 0.571 (Fisher's exact test), Q value = 0.98
Table S115. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ARID1A MUTATED | 31 | 44 | 22 |
ARID1A WILD-TYPE | 83 | 129 | 82 |
P value = 0.782 (Fisher's exact test), Q value = 1
Table S116. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ARID1A MUTATED | 30 | 28 | 39 |
ARID1A WILD-TYPE | 86 | 78 | 130 |
P value = 0.0752 (Fisher's exact test), Q value = 0.57
Table S117. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ARID1A MUTATED | 26 | 32 | 38 |
ARID1A WILD-TYPE | 93 | 64 | 139 |
P value = 0.169 (Fisher's exact test), Q value = 0.71
Table S118. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ARID1A MUTATED | 16 | 28 | 17 | 17 | 18 |
ARID1A WILD-TYPE | 70 | 71 | 72 | 48 | 35 |
P value = 0.285 (Fisher's exact test), Q value = 0.83
Table S119. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ARID1A MUTATED | 18 | 15 | 31 | 30 |
ARID1A WILD-TYPE | 75 | 28 | 96 | 89 |
P value = 0.0404 (Fisher's exact test), Q value = 0.46
Table S120. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ARID1A MUTATED | 22 | 15 | 27 | 14 | 2 | 14 |
ARID1A WILD-TYPE | 52 | 32 | 61 | 51 | 25 | 67 |
Figure S35. Get High-res Image Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.44
Table S121. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
STAG2 MUTATED | 30 | 13 | 5 | 8 |
STAG2 WILD-TYPE | 132 | 124 | 54 | 26 |
Figure S36. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.16
Table S122. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
STAG2 MUTATED | 19 | 13 | 19 | 5 |
STAG2 WILD-TYPE | 116 | 99 | 50 | 74 |
Figure S37. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.7
Table S123. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
STAG2 MUTATED | 8 | 4 | 3 | 0 | 0 |
STAG2 WILD-TYPE | 29 | 25 | 33 | 5 | 20 |
P value = 0.462 (Fisher's exact test), Q value = 0.94
Table S124. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
STAG2 MUTATED | 8 | 3 | 2 | 2 |
STAG2 WILD-TYPE | 35 | 35 | 25 | 17 |
P value = 0.412 (Fisher's exact test), Q value = 0.9
Table S125. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
STAG2 MUTATED | 14 | 29 | 12 |
STAG2 WILD-TYPE | 100 | 144 | 92 |
P value = 0.00635 (Fisher's exact test), Q value = 0.22
Table S126. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
STAG2 MUTATED | 12 | 25 | 18 |
STAG2 WILD-TYPE | 104 | 81 | 151 |
Figure S38. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.49
Table S127. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
STAG2 MUTATED | 16 | 7 | 32 |
STAG2 WILD-TYPE | 103 | 89 | 145 |
Figure S39. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.74
Table S128. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
STAG2 MUTATED | 10 | 9 | 19 | 10 | 7 |
STAG2 WILD-TYPE | 76 | 90 | 70 | 55 | 46 |
P value = 0.02 (Fisher's exact test), Q value = 0.35
Table S129. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
STAG2 MUTATED | 11 | 1 | 25 | 14 |
STAG2 WILD-TYPE | 82 | 42 | 102 | 105 |
Figure S40. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.51
Table S130. Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
STAG2 MUTATED | 9 | 2 | 15 | 6 | 8 | 11 |
STAG2 WILD-TYPE | 65 | 45 | 73 | 59 | 19 | 70 |
Figure S41. Get High-res Image Gene #13: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.14
Table S131. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ERCC2 MUTATED | 6 | 19 | 7 | 6 |
ERCC2 WILD-TYPE | 156 | 118 | 52 | 28 |
Figure S42. Get High-res Image Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.57
Table S132. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ERCC2 MUTATED | 10 | 17 | 3 | 8 |
ERCC2 WILD-TYPE | 125 | 95 | 66 | 71 |
P value = 0.0954 (Fisher's exact test), Q value = 0.59
Table S133. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ERCC2 MUTATED | 3 | 0 | 6 | 1 | 1 |
ERCC2 WILD-TYPE | 34 | 29 | 30 | 4 | 19 |
P value = 0.0589 (Fisher's exact test), Q value = 0.53
Table S134. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ERCC2 MUTATED | 3 | 1 | 6 | 1 |
ERCC2 WILD-TYPE | 40 | 37 | 21 | 18 |
P value = 0.798 (Fisher's exact test), Q value = 1
Table S135. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ERCC2 MUTATED | 9 | 17 | 11 |
ERCC2 WILD-TYPE | 105 | 156 | 93 |
P value = 0.706 (Fisher's exact test), Q value = 1
Table S136. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ERCC2 MUTATED | 11 | 8 | 18 |
ERCC2 WILD-TYPE | 105 | 98 | 151 |
P value = 0.0966 (Fisher's exact test), Q value = 0.59
Table S137. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ERCC2 MUTATED | 7 | 14 | 16 |
ERCC2 WILD-TYPE | 112 | 82 | 161 |
P value = 0.403 (Fisher's exact test), Q value = 0.9
Table S138. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ERCC2 MUTATED | 7 | 13 | 5 | 8 | 4 |
ERCC2 WILD-TYPE | 79 | 86 | 84 | 57 | 49 |
P value = 0.284 (Fisher's exact test), Q value = 0.83
Table S139. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ERCC2 MUTATED | 11 | 6 | 13 | 7 |
ERCC2 WILD-TYPE | 82 | 37 | 114 | 112 |
P value = 0.00936 (Fisher's exact test), Q value = 0.27
Table S140. Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ERCC2 MUTATED | 4 | 8 | 10 | 2 | 0 | 13 |
ERCC2 WILD-TYPE | 70 | 39 | 78 | 63 | 27 | 68 |
Figure S43. Get High-res Image Gene #14: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1
Table S141. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZFP36L1 MUTATED | 10 | 10 | 5 | 4 |
ZFP36L1 WILD-TYPE | 152 | 127 | 54 | 30 |
P value = 0.469 (Fisher's exact test), Q value = 0.94
Table S142. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZFP36L1 MUTATED | 7 | 10 | 4 | 8 |
ZFP36L1 WILD-TYPE | 128 | 102 | 65 | 71 |
P value = 0.93 (Fisher's exact test), Q value = 1
Table S143. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ZFP36L1 MUTATED | 2 | 1 | 3 | 0 | 1 |
ZFP36L1 WILD-TYPE | 35 | 28 | 33 | 5 | 19 |
P value = 0.233 (Fisher's exact test), Q value = 0.79
Table S144. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ZFP36L1 MUTATED | 1 | 1 | 3 | 2 |
ZFP36L1 WILD-TYPE | 42 | 37 | 24 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
Table S145. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZFP36L1 MUTATED | 8 | 13 | 8 |
ZFP36L1 WILD-TYPE | 106 | 160 | 96 |
P value = 0.331 (Fisher's exact test), Q value = 0.85
Table S146. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZFP36L1 MUTATED | 11 | 9 | 9 |
ZFP36L1 WILD-TYPE | 105 | 97 | 160 |
P value = 1 (Fisher's exact test), Q value = 1
Table S147. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZFP36L1 MUTATED | 9 | 7 | 13 |
ZFP36L1 WILD-TYPE | 110 | 89 | 164 |
P value = 0.479 (Fisher's exact test), Q value = 0.95
Table S148. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZFP36L1 MUTATED | 5 | 5 | 6 | 7 | 6 |
ZFP36L1 WILD-TYPE | 81 | 94 | 83 | 58 | 47 |
P value = 0.982 (Fisher's exact test), Q value = 1
Table S149. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZFP36L1 MUTATED | 6 | 3 | 10 | 9 |
ZFP36L1 WILD-TYPE | 87 | 40 | 117 | 110 |
P value = 0.0974 (Fisher's exact test), Q value = 0.59
Table S150. Gene #15: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZFP36L1 MUTATED | 6 | 4 | 12 | 2 | 0 | 4 |
ZFP36L1 WILD-TYPE | 68 | 43 | 76 | 63 | 27 | 77 |
P value = 0.395 (Fisher's exact test), Q value = 0.9
Table S151. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FBXW7 MUTATED | 16 | 8 | 6 | 1 |
FBXW7 WILD-TYPE | 146 | 129 | 53 | 33 |
P value = 0.273 (Fisher's exact test), Q value = 0.81
Table S152. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FBXW7 MUTATED | 16 | 8 | 3 | 5 |
FBXW7 WILD-TYPE | 119 | 104 | 66 | 74 |
P value = 0.276 (Fisher's exact test), Q value = 0.82
Table S153. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FBXW7 MUTATED | 1 | 3 | 5 | 1 | 1 |
FBXW7 WILD-TYPE | 36 | 26 | 31 | 4 | 19 |
P value = 0.666 (Fisher's exact test), Q value = 1
Table S154. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FBXW7 MUTATED | 2 | 4 | 3 | 2 |
FBXW7 WILD-TYPE | 41 | 34 | 24 | 17 |
P value = 0.819 (Fisher's exact test), Q value = 1
Table S155. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FBXW7 MUTATED | 9 | 13 | 10 |
FBXW7 WILD-TYPE | 105 | 160 | 94 |
P value = 0.25 (Fisher's exact test), Q value = 0.79
Table S156. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FBXW7 MUTATED | 6 | 8 | 18 |
FBXW7 WILD-TYPE | 110 | 98 | 151 |
P value = 0.129 (Fisher's exact test), Q value = 0.68
Table S157. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FBXW7 MUTATED | 5 | 8 | 19 |
FBXW7 WILD-TYPE | 114 | 88 | 158 |
P value = 0.225 (Fisher's exact test), Q value = 0.78
Table S158. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FBXW7 MUTATED | 11 | 7 | 7 | 6 | 1 |
FBXW7 WILD-TYPE | 75 | 92 | 82 | 59 | 52 |
P value = 0.0796 (Fisher's exact test), Q value = 0.57
Table S159. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FBXW7 MUTATED | 13 | 4 | 10 | 5 |
FBXW7 WILD-TYPE | 80 | 39 | 117 | 114 |
P value = 0.157 (Fisher's exact test), Q value = 0.71
Table S160. Gene #16: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FBXW7 MUTATED | 2 | 6 | 7 | 4 | 2 | 11 |
FBXW7 WILD-TYPE | 72 | 41 | 81 | 61 | 25 | 70 |
P value = 0.37 (Fisher's exact test), Q value = 0.89
Table S161. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
HRAS MUTATED | 10 | 4 | 1 | 2 |
HRAS WILD-TYPE | 152 | 133 | 58 | 32 |
P value = 0.015 (Fisher's exact test), Q value = 0.32
Table S162. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
HRAS MUTATED | 4 | 2 | 2 | 9 |
HRAS WILD-TYPE | 131 | 110 | 67 | 70 |
Figure S44. Get High-res Image Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.28
Table S163. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
HRAS MUTATED | 3 | 0 | 1 | 2 | 0 |
HRAS WILD-TYPE | 34 | 29 | 35 | 3 | 20 |
Figure S45. Get High-res Image Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.79
Table S164. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
HRAS MUTATED | 4 | 0 | 1 | 1 |
HRAS WILD-TYPE | 39 | 38 | 26 | 18 |
P value = 0.7 (Fisher's exact test), Q value = 1
Table S165. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
HRAS MUTATED | 4 | 7 | 6 |
HRAS WILD-TYPE | 110 | 166 | 98 |
P value = 0.776 (Fisher's exact test), Q value = 1
Table S166. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
HRAS MUTATED | 4 | 4 | 9 |
HRAS WILD-TYPE | 112 | 102 | 160 |
P value = 1 (Fisher's exact test), Q value = 1
Table S167. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
HRAS MUTATED | 5 | 4 | 8 |
HRAS WILD-TYPE | 114 | 92 | 169 |
P value = 0.297 (Fisher's exact test), Q value = 0.84
Table S168. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
HRAS MUTATED | 5 | 3 | 7 | 1 | 1 |
HRAS WILD-TYPE | 81 | 96 | 82 | 64 | 52 |
P value = 0.316 (Fisher's exact test), Q value = 0.84
Table S169. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
HRAS MUTATED | 6 | 2 | 6 | 2 |
HRAS WILD-TYPE | 87 | 41 | 121 | 117 |
P value = 0.19 (Fisher's exact test), Q value = 0.74
Table S170. Gene #17: 'HRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
HRAS MUTATED | 3 | 2 | 3 | 0 | 1 | 7 |
HRAS WILD-TYPE | 71 | 45 | 85 | 65 | 26 | 74 |
P value = 0.444 (Fisher's exact test), Q value = 0.93
Table S171. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CREBBP MUTATED | 19 | 13 | 10 | 5 |
CREBBP WILD-TYPE | 143 | 124 | 49 | 29 |
P value = 0.425 (Fisher's exact test), Q value = 0.92
Table S172. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CREBBP MUTATED | 20 | 15 | 7 | 6 |
CREBBP WILD-TYPE | 115 | 97 | 62 | 73 |
P value = 0.985 (Fisher's exact test), Q value = 1
Table S173. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CREBBP MUTATED | 5 | 4 | 6 | 0 | 2 |
CREBBP WILD-TYPE | 32 | 25 | 30 | 5 | 18 |
P value = 0.159 (Fisher's exact test), Q value = 0.71
Table S174. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CREBBP MUTATED | 6 | 3 | 7 | 1 |
CREBBP WILD-TYPE | 37 | 35 | 20 | 18 |
P value = 0.175 (Fisher's exact test), Q value = 0.73
Table S175. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CREBBP MUTATED | 16 | 15 | 16 |
CREBBP WILD-TYPE | 98 | 158 | 88 |
P value = 0.544 (Fisher's exact test), Q value = 0.98
Table S176. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CREBBP MUTATED | 12 | 11 | 24 |
CREBBP WILD-TYPE | 104 | 95 | 145 |
P value = 0.00247 (Fisher's exact test), Q value = 0.13
Table S177. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CREBBP MUTATED | 15 | 3 | 29 |
CREBBP WILD-TYPE | 104 | 93 | 148 |
Figure S46. Get High-res Image Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.44
Table S178. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CREBBP MUTATED | 17 | 5 | 9 | 9 | 7 |
CREBBP WILD-TYPE | 69 | 94 | 80 | 56 | 46 |
Figure S47. Get High-res Image Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.57
Table S179. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CREBBP MUTATED | 16 | 1 | 16 | 14 |
CREBBP WILD-TYPE | 77 | 42 | 111 | 105 |
P value = 0.463 (Fisher's exact test), Q value = 0.94
Table S180. Gene #18: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CREBBP MUTATED | 10 | 2 | 11 | 7 | 4 | 13 |
CREBBP WILD-TYPE | 64 | 45 | 77 | 58 | 23 | 68 |
P value = 0.0317 (Fisher's exact test), Q value = 0.44
Table S181. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
KRAS MUTATED | 11 | 2 | 0 | 1 |
KRAS WILD-TYPE | 151 | 135 | 59 | 33 |
Figure S48. Get High-res Image Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1
Table S182. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
KRAS MUTATED | 4 | 6 | 2 | 2 |
KRAS WILD-TYPE | 131 | 106 | 67 | 77 |
P value = 0.478 (Fisher's exact test), Q value = 0.95
Table S183. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
KRAS MUTATED | 6 | 6 | 2 |
KRAS WILD-TYPE | 108 | 167 | 102 |
P value = 0.0982 (Fisher's exact test), Q value = 0.59
Table S184. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
KRAS MUTATED | 1 | 6 | 7 |
KRAS WILD-TYPE | 115 | 100 | 162 |
P value = 0.315 (Fisher's exact test), Q value = 0.84
Table S185. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
KRAS MUTATED | 4 | 1 | 8 |
KRAS WILD-TYPE | 115 | 95 | 169 |
P value = 0.404 (Fisher's exact test), Q value = 0.9
Table S186. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
KRAS MUTATED | 5 | 1 | 4 | 2 | 1 |
KRAS WILD-TYPE | 81 | 98 | 85 | 63 | 52 |
P value = 0.625 (Fisher's exact test), Q value = 1
Table S187. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
KRAS MUTATED | 3 | 1 | 6 | 2 |
KRAS WILD-TYPE | 90 | 42 | 121 | 117 |
P value = 0.496 (Fisher's exact test), Q value = 0.96
Table S188. Gene #19: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
KRAS MUTATED | 2 | 1 | 4 | 0 | 1 | 4 |
KRAS WILD-TYPE | 72 | 46 | 84 | 65 | 26 | 77 |
P value = 0.00018 (Fisher's exact test), Q value = 0.012
Table S189. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NFE2L2 MUTATED | 18 | 1 | 1 | 4 |
NFE2L2 WILD-TYPE | 144 | 136 | 58 | 30 |
Figure S49. Get High-res Image Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.57
Table S190. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NFE2L2 MUTATED | 11 | 3 | 2 | 8 |
NFE2L2 WILD-TYPE | 124 | 109 | 67 | 71 |
P value = 0.257 (Fisher's exact test), Q value = 0.8
Table S191. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
NFE2L2 MUTATED | 1 | 4 | 3 | 1 | 3 |
NFE2L2 WILD-TYPE | 36 | 25 | 33 | 4 | 17 |
P value = 0.683 (Fisher's exact test), Q value = 1
Table S192. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
NFE2L2 MUTATED | 3 | 4 | 4 | 1 |
NFE2L2 WILD-TYPE | 40 | 34 | 23 | 18 |
P value = 0.00196 (Fisher's exact test), Q value = 0.11
Table S193. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NFE2L2 MUTATED | 8 | 3 | 12 |
NFE2L2 WILD-TYPE | 106 | 170 | 92 |
Figure S50. Get High-res Image Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.26
Table S194. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NFE2L2 MUTATED | 6 | 1 | 16 |
NFE2L2 WILD-TYPE | 110 | 105 | 153 |
Figure S51. Get High-res Image Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.57
Table S195. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NFE2L2 MUTATED | 12 | 4 | 7 |
NFE2L2 WILD-TYPE | 107 | 92 | 170 |
P value = 0.656 (Fisher's exact test), Q value = 1
Table S196. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NFE2L2 MUTATED | 7 | 5 | 3 | 5 | 3 |
NFE2L2 WILD-TYPE | 79 | 94 | 86 | 60 | 50 |
P value = 0.39 (Fisher's exact test), Q value = 0.89
Table S197. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NFE2L2 MUTATED | 8 | 1 | 5 | 8 |
NFE2L2 WILD-TYPE | 85 | 42 | 122 | 111 |
P value = 0.142 (Fisher's exact test), Q value = 0.71
Table S198. Gene #20: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NFE2L2 MUTATED | 4 | 1 | 2 | 8 | 1 | 6 |
NFE2L2 WILD-TYPE | 70 | 46 | 86 | 57 | 26 | 75 |
P value = 0.214 (Fisher's exact test), Q value = 0.77
Table S199. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RHOA MUTATED | 4 | 10 | 2 | 2 |
RHOA WILD-TYPE | 158 | 127 | 57 | 32 |
P value = 0.35 (Fisher's exact test), Q value = 0.87
Table S200. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RHOA MUTATED | 3 | 7 | 3 | 5 |
RHOA WILD-TYPE | 132 | 105 | 66 | 74 |
P value = 0.18 (Fisher's exact test), Q value = 0.74
Table S201. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RHOA MUTATED | 2 | 1 | 0 | 1 | 1 |
RHOA WILD-TYPE | 35 | 28 | 36 | 4 | 19 |
P value = 0.403 (Fisher's exact test), Q value = 0.9
Table S202. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RHOA MUTATED | 1 | 3 | 0 | 1 |
RHOA WILD-TYPE | 42 | 35 | 27 | 18 |
P value = 0.408 (Fisher's exact test), Q value = 0.9
Table S203. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RHOA MUTATED | 4 | 11 | 3 |
RHOA WILD-TYPE | 110 | 162 | 101 |
P value = 0.483 (Fisher's exact test), Q value = 0.95
Table S204. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RHOA MUTATED | 5 | 7 | 6 |
RHOA WILD-TYPE | 111 | 99 | 163 |
P value = 0.0515 (Fisher's exact test), Q value = 0.51
Table S205. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RHOA MUTATED | 4 | 9 | 5 |
RHOA WILD-TYPE | 115 | 87 | 172 |
P value = 0.0896 (Fisher's exact test), Q value = 0.58
Table S206. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RHOA MUTATED | 1 | 9 | 2 | 3 | 3 |
RHOA WILD-TYPE | 85 | 90 | 87 | 62 | 50 |
P value = 0.769 (Fisher's exact test), Q value = 1
Table S207. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RHOA MUTATED | 3 | 3 | 6 | 6 |
RHOA WILD-TYPE | 90 | 40 | 121 | 113 |
P value = 0.628 (Fisher's exact test), Q value = 1
Table S208. Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RHOA MUTATED | 3 | 3 | 6 | 4 | 0 | 2 |
RHOA WILD-TYPE | 71 | 44 | 82 | 61 | 27 | 79 |
P value = 0.887 (Fisher's exact test), Q value = 1
Table S209. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
PTEN MUTATED | 5 | 5 | 3 | 1 |
PTEN WILD-TYPE | 157 | 132 | 56 | 33 |
P value = 0.094 (Fisher's exact test), Q value = 0.59
Table S210. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
PTEN MUTATED | 7 | 6 | 1 | 0 |
PTEN WILD-TYPE | 128 | 106 | 68 | 79 |
P value = 0.424 (Fisher's exact test), Q value = 0.92
Table S211. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
PTEN MUTATED | 1 | 0 | 2 | 0 | 2 |
PTEN WILD-TYPE | 36 | 29 | 34 | 5 | 18 |
P value = 0.432 (Fisher's exact test), Q value = 0.92
Table S212. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
PTEN MUTATED | 1 | 1 | 1 | 2 |
PTEN WILD-TYPE | 42 | 37 | 26 | 17 |
P value = 0.673 (Fisher's exact test), Q value = 1
Table S213. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
PTEN MUTATED | 3 | 5 | 5 |
PTEN WILD-TYPE | 111 | 168 | 99 |
P value = 0.159 (Fisher's exact test), Q value = 0.71
Table S214. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
PTEN MUTATED | 1 | 4 | 8 |
PTEN WILD-TYPE | 115 | 102 | 161 |
P value = 1 (Fisher's exact test), Q value = 1
Table S215. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
PTEN MUTATED | 4 | 3 | 6 |
PTEN WILD-TYPE | 115 | 93 | 171 |
P value = 0.96 (Fisher's exact test), Q value = 1
Table S216. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
PTEN MUTATED | 4 | 3 | 3 | 2 | 1 |
PTEN WILD-TYPE | 82 | 96 | 86 | 63 | 52 |
P value = 0.697 (Fisher's exact test), Q value = 1
Table S217. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
PTEN MUTATED | 3 | 0 | 5 | 5 |
PTEN WILD-TYPE | 90 | 43 | 122 | 114 |
P value = 0.756 (Fisher's exact test), Q value = 1
Table S218. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
PTEN MUTATED | 3 | 1 | 2 | 2 | 0 | 5 |
PTEN WILD-TYPE | 71 | 46 | 86 | 63 | 27 | 76 |
P value = 0.682 (Fisher's exact test), Q value = 1
Table S219. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
C3ORF70 MUTATED | 8 | 4 | 3 | 2 |
C3ORF70 WILD-TYPE | 154 | 133 | 56 | 32 |
P value = 0.169 (Fisher's exact test), Q value = 0.71
Table S220. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
C3ORF70 MUTATED | 7 | 7 | 0 | 3 |
C3ORF70 WILD-TYPE | 128 | 105 | 69 | 76 |
P value = 0.188 (Fisher's exact test), Q value = 0.74
Table S221. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
C3ORF70 MUTATED | 2 | 0 | 2 | 1 | 0 |
C3ORF70 WILD-TYPE | 35 | 29 | 34 | 4 | 20 |
P value = 1 (Fisher's exact test), Q value = 1
Table S222. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
C3ORF70 MUTATED | 2 | 1 | 1 | 1 |
C3ORF70 WILD-TYPE | 41 | 37 | 26 | 18 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S223. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
C3ORF70 MUTATED | 5 | 7 | 5 |
C3ORF70 WILD-TYPE | 109 | 166 | 99 |
P value = 0.568 (Fisher's exact test), Q value = 0.98
Table S224. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
C3ORF70 MUTATED | 3 | 5 | 9 |
C3ORF70 WILD-TYPE | 113 | 101 | 160 |
P value = 0.774 (Fisher's exact test), Q value = 1
Table S225. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
C3ORF70 MUTATED | 5 | 3 | 9 |
C3ORF70 WILD-TYPE | 114 | 93 | 168 |
P value = 0.534 (Fisher's exact test), Q value = 0.98
Table S226. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
C3ORF70 MUTATED | 5 | 4 | 3 | 1 | 4 |
C3ORF70 WILD-TYPE | 81 | 95 | 86 | 64 | 49 |
P value = 0.788 (Fisher's exact test), Q value = 1
Table S227. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
C3ORF70 MUTATED | 5 | 1 | 4 | 6 |
C3ORF70 WILD-TYPE | 88 | 42 | 123 | 113 |
P value = 0.927 (Fisher's exact test), Q value = 1
Table S228. Gene #23: 'C3ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
C3ORF70 MUTATED | 3 | 2 | 4 | 4 | 0 | 3 |
C3ORF70 WILD-TYPE | 71 | 45 | 84 | 61 | 27 | 78 |
P value = 0.817 (Fisher's exact test), Q value = 1
Table S229. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RBM10 MUTATED | 7 | 9 | 3 | 2 |
RBM10 WILD-TYPE | 155 | 128 | 56 | 32 |
P value = 0.199 (Fisher's exact test), Q value = 0.76
Table S230. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RBM10 MUTATED | 10 | 8 | 3 | 1 |
RBM10 WILD-TYPE | 125 | 104 | 66 | 78 |
P value = 0.471 (Fisher's exact test), Q value = 0.94
Table S231. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RBM10 MUTATED | 1 | 1 | 4 | 0 | 0 |
RBM10 WILD-TYPE | 36 | 28 | 32 | 5 | 20 |
P value = 0.891 (Fisher's exact test), Q value = 1
Table S232. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RBM10 MUTATED | 3 | 2 | 1 | 0 |
RBM10 WILD-TYPE | 40 | 36 | 26 | 19 |
P value = 0.562 (Fisher's exact test), Q value = 0.98
Table S233. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RBM10 MUTATED | 5 | 9 | 8 |
RBM10 WILD-TYPE | 109 | 164 | 96 |
P value = 0.886 (Fisher's exact test), Q value = 1
Table S234. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RBM10 MUTATED | 6 | 7 | 9 |
RBM10 WILD-TYPE | 110 | 99 | 160 |
P value = 0.424 (Fisher's exact test), Q value = 0.92
Table S235. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RBM10 MUTATED | 5 | 8 | 9 |
RBM10 WILD-TYPE | 114 | 88 | 168 |
P value = 0.805 (Fisher's exact test), Q value = 1
Table S236. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RBM10 MUTATED | 4 | 8 | 4 | 4 | 2 |
RBM10 WILD-TYPE | 82 | 91 | 85 | 61 | 51 |
P value = 0.3 (Fisher's exact test), Q value = 0.84
Table S237. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RBM10 MUTATED | 5 | 4 | 4 | 9 |
RBM10 WILD-TYPE | 88 | 39 | 123 | 110 |
P value = 0.17 (Fisher's exact test), Q value = 0.72
Table S238. Gene #24: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RBM10 MUTATED | 3 | 6 | 4 | 6 | 0 | 3 |
RBM10 WILD-TYPE | 71 | 41 | 84 | 59 | 27 | 78 |
P value = 0.425 (Fisher's exact test), Q value = 0.92
Table S239. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
PSIP1 MUTATED | 8 | 10 | 1 | 1 |
PSIP1 WILD-TYPE | 154 | 127 | 58 | 33 |
P value = 0.0229 (Fisher's exact test), Q value = 0.39
Table S240. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
PSIP1 MUTATED | 3 | 12 | 2 | 3 |
PSIP1 WILD-TYPE | 132 | 100 | 67 | 76 |
Figure S52. Get High-res Image Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.59
Table S241. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
PSIP1 MUTATED | 3 | 2 | 0 | 1 | 0 |
PSIP1 WILD-TYPE | 34 | 27 | 36 | 4 | 20 |
P value = 0.313 (Fisher's exact test), Q value = 0.84
Table S242. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
PSIP1 MUTATED | 4 | 2 | 0 | 0 |
PSIP1 WILD-TYPE | 39 | 36 | 27 | 19 |
P value = 0.171 (Fisher's exact test), Q value = 0.72
Table S243. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
PSIP1 MUTATED | 3 | 13 | 4 |
PSIP1 WILD-TYPE | 111 | 160 | 100 |
P value = 0.0165 (Fisher's exact test), Q value = 0.33
Table S244. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
PSIP1 MUTATED | 5 | 11 | 4 |
PSIP1 WILD-TYPE | 111 | 95 | 165 |
Figure S53. Get High-res Image Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.51
Table S245. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
PSIP1 MUTATED | 2 | 4 | 14 |
PSIP1 WILD-TYPE | 117 | 92 | 163 |
P value = 0.00971 (Fisher's exact test), Q value = 0.27
Table S246. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
PSIP1 MUTATED | 0 | 5 | 7 | 7 | 1 |
PSIP1 WILD-TYPE | 86 | 94 | 82 | 58 | 52 |
Figure S54. Get High-res Image Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.44
Table S247. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
PSIP1 MUTATED | 1 | 1 | 12 | 6 |
PSIP1 WILD-TYPE | 92 | 42 | 115 | 113 |
Figure S55. Get High-res Image Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.34
Table S248. Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
PSIP1 MUTATED | 1 | 1 | 8 | 6 | 3 | 1 |
PSIP1 WILD-TYPE | 73 | 46 | 80 | 59 | 24 | 80 |
Figure S56. Get High-res Image Gene #25: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.74
Table S249. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ASXL2 MUTATED | 14 | 18 | 3 | 1 |
ASXL2 WILD-TYPE | 148 | 119 | 56 | 33 |
P value = 0.544 (Fisher's exact test), Q value = 0.98
Table S250. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ASXL2 MUTATED | 10 | 14 | 6 | 6 |
ASXL2 WILD-TYPE | 125 | 98 | 63 | 73 |
P value = 0.313 (Fisher's exact test), Q value = 0.84
Table S251. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ASXL2 MUTATED | 4 | 1 | 3 | 1 | 0 |
ASXL2 WILD-TYPE | 33 | 28 | 33 | 4 | 20 |
P value = 0.553 (Fisher's exact test), Q value = 0.98
Table S252. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ASXL2 MUTATED | 4 | 2 | 3 | 0 |
ASXL2 WILD-TYPE | 39 | 36 | 24 | 19 |
P value = 0.619 (Fisher's exact test), Q value = 1
Table S253. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ASXL2 MUTATED | 11 | 13 | 11 |
ASXL2 WILD-TYPE | 103 | 160 | 93 |
P value = 0.59 (Fisher's exact test), Q value = 0.99
Table S254. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ASXL2 MUTATED | 13 | 8 | 14 |
ASXL2 WILD-TYPE | 103 | 98 | 155 |
P value = 0.364 (Fisher's exact test), Q value = 0.89
Table S255. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ASXL2 MUTATED | 11 | 12 | 13 |
ASXL2 WILD-TYPE | 108 | 84 | 164 |
P value = 0.542 (Fisher's exact test), Q value = 0.98
Table S256. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ASXL2 MUTATED | 7 | 12 | 8 | 3 | 6 |
ASXL2 WILD-TYPE | 79 | 87 | 81 | 62 | 47 |
P value = 0.389 (Fisher's exact test), Q value = 0.89
Table S257. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ASXL2 MUTATED | 7 | 7 | 10 | 11 |
ASXL2 WILD-TYPE | 86 | 36 | 117 | 108 |
P value = 0.696 (Fisher's exact test), Q value = 1
Table S258. Gene #26: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ASXL2 MUTATED | 6 | 6 | 7 | 8 | 3 | 5 |
ASXL2 WILD-TYPE | 68 | 41 | 81 | 57 | 24 | 76 |
P value = 0.0711 (Fisher's exact test), Q value = 0.57
Table S259. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FAT1 MUTATED | 29 | 15 | 4 | 2 |
FAT1 WILD-TYPE | 133 | 122 | 55 | 32 |
P value = 0.0657 (Fisher's exact test), Q value = 0.55
Table S260. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FAT1 MUTATED | 23 | 14 | 3 | 10 |
FAT1 WILD-TYPE | 112 | 98 | 66 | 69 |
P value = 0.307 (Fisher's exact test), Q value = 0.84
Table S261. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FAT1 MUTATED | 3 | 3 | 6 | 2 | 2 |
FAT1 WILD-TYPE | 34 | 26 | 30 | 3 | 18 |
P value = 0.714 (Fisher's exact test), Q value = 1
Table S262. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FAT1 MUTATED | 4 | 5 | 5 | 2 |
FAT1 WILD-TYPE | 39 | 33 | 22 | 17 |
P value = 0.558 (Fisher's exact test), Q value = 0.98
Table S263. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FAT1 MUTATED | 15 | 18 | 15 |
FAT1 WILD-TYPE | 99 | 155 | 89 |
P value = 0.196 (Fisher's exact test), Q value = 0.75
Table S264. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FAT1 MUTATED | 9 | 14 | 25 |
FAT1 WILD-TYPE | 107 | 92 | 144 |
P value = 0.106 (Fisher's exact test), Q value = 0.62
Table S265. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FAT1 MUTATED | 20 | 7 | 23 |
FAT1 WILD-TYPE | 99 | 89 | 154 |
P value = 0.654 (Fisher's exact test), Q value = 1
Table S266. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FAT1 MUTATED | 15 | 10 | 10 | 8 | 7 |
FAT1 WILD-TYPE | 71 | 89 | 79 | 57 | 46 |
P value = 0.187 (Fisher's exact test), Q value = 0.74
Table S267. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FAT1 MUTATED | 16 | 2 | 18 | 13 |
FAT1 WILD-TYPE | 77 | 41 | 109 | 106 |
P value = 0.0895 (Fisher's exact test), Q value = 0.58
Table S268. Gene #27: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FAT1 MUTATED | 8 | 1 | 16 | 7 | 4 | 13 |
FAT1 WILD-TYPE | 66 | 46 | 72 | 58 | 23 | 68 |
P value = 0.327 (Fisher's exact test), Q value = 0.85
Table S269. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SPTAN1 MUTATED | 24 | 13 | 5 | 2 |
SPTAN1 WILD-TYPE | 138 | 124 | 54 | 32 |
P value = 0.218 (Fisher's exact test), Q value = 0.78
Table S270. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SPTAN1 MUTATED | 10 | 17 | 7 | 11 |
SPTAN1 WILD-TYPE | 125 | 95 | 62 | 68 |
P value = 0.936 (Fisher's exact test), Q value = 1
Table S271. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SPTAN1 MUTATED | 5 | 4 | 4 | 1 | 2 |
SPTAN1 WILD-TYPE | 32 | 25 | 32 | 4 | 18 |
P value = 0.168 (Fisher's exact test), Q value = 0.71
Table S272. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SPTAN1 MUTATED | 9 | 5 | 1 | 1 |
SPTAN1 WILD-TYPE | 34 | 33 | 26 | 18 |
P value = 0.226 (Fisher's exact test), Q value = 0.79
Table S273. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SPTAN1 MUTATED | 12 | 25 | 8 |
SPTAN1 WILD-TYPE | 102 | 148 | 96 |
P value = 0.204 (Fisher's exact test), Q value = 0.76
Table S274. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SPTAN1 MUTATED | 16 | 15 | 14 |
SPTAN1 WILD-TYPE | 100 | 91 | 155 |
P value = 0.239 (Fisher's exact test), Q value = 0.79
Table S275. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SPTAN1 MUTATED | 9 | 14 | 22 |
SPTAN1 WILD-TYPE | 110 | 82 | 155 |
P value = 0.0767 (Fisher's exact test), Q value = 0.57
Table S276. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SPTAN1 MUTATED | 4 | 13 | 16 | 7 | 5 |
SPTAN1 WILD-TYPE | 82 | 86 | 73 | 58 | 48 |
P value = 0.041 (Fisher's exact test), Q value = 0.46
Table S277. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SPTAN1 MUTATED | 6 | 2 | 22 | 15 |
SPTAN1 WILD-TYPE | 87 | 41 | 105 | 104 |
Figure S57. Get High-res Image Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.55
Table S278. Gene #28: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SPTAN1 MUTATED | 8 | 4 | 12 | 8 | 8 | 5 |
SPTAN1 WILD-TYPE | 66 | 43 | 76 | 57 | 19 | 76 |
P value = 0.0885 (Fisher's exact test), Q value = 0.58
Table S279. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZBTB7B MUTATED | 5 | 1 | 4 | 1 |
ZBTB7B WILD-TYPE | 157 | 136 | 55 | 33 |
P value = 0.826 (Fisher's exact test), Q value = 1
Table S280. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZBTB7B MUTATED | 4 | 4 | 2 | 1 |
ZBTB7B WILD-TYPE | 131 | 108 | 67 | 78 |
P value = 0.396 (Fisher's exact test), Q value = 0.9
Table S281. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ZBTB7B MUTATED | 0 | 2 | 2 | 0 | 0 |
ZBTB7B WILD-TYPE | 37 | 27 | 34 | 5 | 20 |
P value = 0.39 (Fisher's exact test), Q value = 0.89
Table S282. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ZBTB7B MUTATED | 0 | 2 | 1 | 1 |
ZBTB7B WILD-TYPE | 43 | 36 | 26 | 18 |
P value = 0.54 (Fisher's exact test), Q value = 0.98
Table S283. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZBTB7B MUTATED | 2 | 7 | 2 |
ZBTB7B WILD-TYPE | 112 | 166 | 102 |
P value = 0.399 (Fisher's exact test), Q value = 0.9
Table S284. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZBTB7B MUTATED | 2 | 5 | 4 |
ZBTB7B WILD-TYPE | 114 | 101 | 165 |
P value = 0.359 (Fisher's exact test), Q value = 0.88
Table S285. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZBTB7B MUTATED | 5 | 3 | 3 |
ZBTB7B WILD-TYPE | 114 | 93 | 174 |
P value = 0.227 (Fisher's exact test), Q value = 0.79
Table S286. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZBTB7B MUTATED | 0 | 4 | 2 | 2 | 3 |
ZBTB7B WILD-TYPE | 86 | 95 | 87 | 63 | 50 |
P value = 0.474 (Fisher's exact test), Q value = 0.95
Table S287. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZBTB7B MUTATED | 2 | 2 | 2 | 5 |
ZBTB7B WILD-TYPE | 91 | 41 | 125 | 114 |
P value = 0.0181 (Fisher's exact test), Q value = 0.34
Table S288. Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZBTB7B MUTATED | 5 | 2 | 0 | 0 | 2 | 2 |
ZBTB7B WILD-TYPE | 69 | 45 | 88 | 65 | 25 | 79 |
Figure S58. Get High-res Image Gene #29: 'ZBTB7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1
Table S289. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CUL1 MUTATED | 6 | 5 | 4 | 2 |
CUL1 WILD-TYPE | 156 | 132 | 55 | 32 |
P value = 0.92 (Fisher's exact test), Q value = 1
Table S290. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CUL1 MUTATED | 6 | 5 | 3 | 5 |
CUL1 WILD-TYPE | 129 | 107 | 66 | 74 |
P value = 0.683 (Fisher's exact test), Q value = 1
Table S291. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CUL1 MUTATED | 3 | 1 | 1 | 0 | 2 |
CUL1 WILD-TYPE | 34 | 28 | 35 | 5 | 18 |
P value = 0.156 (Fisher's exact test), Q value = 0.71
Table S292. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CUL1 MUTATED | 4 | 0 | 1 | 2 |
CUL1 WILD-TYPE | 39 | 38 | 26 | 17 |
P value = 0.572 (Fisher's exact test), Q value = 0.98
Table S293. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CUL1 MUTATED | 4 | 8 | 7 |
CUL1 WILD-TYPE | 110 | 165 | 97 |
P value = 0.454 (Fisher's exact test), Q value = 0.94
Table S294. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CUL1 MUTATED | 4 | 4 | 11 |
CUL1 WILD-TYPE | 112 | 102 | 158 |
P value = 0.409 (Fisher's exact test), Q value = 0.9
Table S295. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CUL1 MUTATED | 8 | 5 | 6 |
CUL1 WILD-TYPE | 111 | 91 | 171 |
P value = 0.904 (Fisher's exact test), Q value = 1
Table S296. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CUL1 MUTATED | 3 | 5 | 6 | 3 | 2 |
CUL1 WILD-TYPE | 83 | 94 | 83 | 62 | 51 |
P value = 0.467 (Fisher's exact test), Q value = 0.94
Table S297. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CUL1 MUTATED | 7 | 1 | 4 | 6 |
CUL1 WILD-TYPE | 86 | 42 | 123 | 113 |
P value = 0.581 (Fisher's exact test), Q value = 0.99
Table S298. Gene #30: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CUL1 MUTATED | 6 | 2 | 2 | 2 | 1 | 5 |
CUL1 WILD-TYPE | 68 | 45 | 86 | 63 | 26 | 76 |
P value = 0.139 (Fisher's exact test), Q value = 0.7
Table S299. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
KLF5 MUTATED | 12 | 4 | 3 | 4 |
KLF5 WILD-TYPE | 150 | 133 | 56 | 30 |
P value = 0.98 (Fisher's exact test), Q value = 1
Table S300. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
KLF5 MUTATED | 7 | 7 | 4 | 5 |
KLF5 WILD-TYPE | 128 | 105 | 65 | 74 |
P value = 0.271 (Fisher's exact test), Q value = 0.81
Table S301. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
KLF5 MUTATED | 4 | 1 | 4 | 1 | 0 |
KLF5 WILD-TYPE | 33 | 28 | 32 | 4 | 20 |
P value = 0.306 (Fisher's exact test), Q value = 0.84
Table S302. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
KLF5 MUTATED | 6 | 2 | 2 | 0 |
KLF5 WILD-TYPE | 37 | 36 | 25 | 19 |
P value = 0.63 (Fisher's exact test), Q value = 1
Table S303. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
KLF5 MUTATED | 7 | 12 | 4 |
KLF5 WILD-TYPE | 107 | 161 | 100 |
P value = 0.706 (Fisher's exact test), Q value = 1
Table S304. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
KLF5 MUTATED | 6 | 8 | 9 |
KLF5 WILD-TYPE | 110 | 98 | 160 |
P value = 0.49 (Fisher's exact test), Q value = 0.96
Table S305. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
KLF5 MUTATED | 6 | 8 | 9 |
KLF5 WILD-TYPE | 113 | 88 | 168 |
P value = 0.122 (Fisher's exact test), Q value = 0.66
Table S306. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
KLF5 MUTATED | 1 | 8 | 4 | 5 | 5 |
KLF5 WILD-TYPE | 85 | 91 | 85 | 60 | 48 |
P value = 0.0196 (Fisher's exact test), Q value = 0.35
Table S307. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
KLF5 MUTATED | 1 | 6 | 7 | 8 |
KLF5 WILD-TYPE | 92 | 37 | 120 | 111 |
Figure S59. Get High-res Image Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.79
Table S308. Gene #31: 'KLF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
KLF5 MUTATED | 5 | 5 | 5 | 5 | 1 | 1 |
KLF5 WILD-TYPE | 69 | 42 | 83 | 60 | 26 | 80 |
P value = 0.0405 (Fisher's exact test), Q value = 0.46
Table S309. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RXRA MUTATED | 7 | 15 | 1 | 1 |
RXRA WILD-TYPE | 155 | 122 | 58 | 33 |
Figure S60. Get High-res Image Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 0.27
Table S310. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RXRA MUTATED | 7 | 13 | 0 | 4 |
RXRA WILD-TYPE | 128 | 99 | 69 | 75 |
Figure S61. Get High-res Image Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.7
Table S311. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RXRA MUTATED | 7 | 1 | 2 | 1 | 1 |
RXRA WILD-TYPE | 30 | 28 | 34 | 4 | 19 |
P value = 0.721 (Fisher's exact test), Q value = 1
Table S312. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RXRA MUTATED | 5 | 4 | 1 | 2 |
RXRA WILD-TYPE | 38 | 34 | 26 | 17 |
P value = 0.571 (Fisher's exact test), Q value = 0.98
Table S313. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RXRA MUTATED | 5 | 13 | 6 |
RXRA WILD-TYPE | 109 | 160 | 98 |
P value = 0.26 (Fisher's exact test), Q value = 0.81
Table S314. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RXRA MUTATED | 5 | 10 | 9 |
RXRA WILD-TYPE | 111 | 96 | 160 |
P value = 0.346 (Fisher's exact test), Q value = 0.86
Table S315. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RXRA MUTATED | 6 | 9 | 9 |
RXRA WILD-TYPE | 113 | 87 | 168 |
P value = 0.0616 (Fisher's exact test), Q value = 0.55
Table S316. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RXRA MUTATED | 4 | 10 | 1 | 6 | 3 |
RXRA WILD-TYPE | 82 | 89 | 88 | 59 | 50 |
P value = 0.37 (Fisher's exact test), Q value = 0.89
Table S317. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RXRA MUTATED | 4 | 5 | 9 | 6 |
RXRA WILD-TYPE | 89 | 38 | 118 | 113 |
P value = 0.0727 (Fisher's exact test), Q value = 0.57
Table S318. Gene #32: 'RXRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RXRA MUTATED | 4 | 6 | 9 | 1 | 0 | 4 |
RXRA WILD-TYPE | 70 | 41 | 79 | 64 | 27 | 77 |
P value = 0.738 (Fisher's exact test), Q value = 1
Table S319. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
GNA13 MUTATED | 5 | 6 | 1 | 0 |
GNA13 WILD-TYPE | 157 | 131 | 58 | 34 |
P value = 0.267 (Fisher's exact test), Q value = 0.81
Table S320. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
GNA13 MUTATED | 2 | 3 | 2 | 5 |
GNA13 WILD-TYPE | 133 | 109 | 67 | 74 |
P value = 0.726 (Fisher's exact test), Q value = 1
Table S321. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
GNA13 MUTATED | 2 | 0 | 2 | 0 | 1 |
GNA13 WILD-TYPE | 35 | 29 | 34 | 5 | 19 |
P value = 0.931 (Fisher's exact test), Q value = 1
Table S322. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
GNA13 MUTATED | 2 | 2 | 1 | 0 |
GNA13 WILD-TYPE | 41 | 36 | 26 | 19 |
P value = 0.0856 (Fisher's exact test), Q value = 0.57
Table S323. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
GNA13 MUTATED | 7 | 4 | 1 |
GNA13 WILD-TYPE | 107 | 169 | 103 |
P value = 0.368 (Fisher's exact test), Q value = 0.89
Table S324. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
GNA13 MUTATED | 6 | 2 | 4 |
GNA13 WILD-TYPE | 110 | 104 | 165 |
P value = 0.675 (Fisher's exact test), Q value = 1
Table S325. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
GNA13 MUTATED | 3 | 4 | 4 |
GNA13 WILD-TYPE | 116 | 92 | 173 |
P value = 0.354 (Fisher's exact test), Q value = 0.87
Table S326. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
GNA13 MUTATED | 2 | 4 | 2 | 0 | 3 |
GNA13 WILD-TYPE | 84 | 95 | 87 | 65 | 50 |
P value = 0.0725 (Fisher's exact test), Q value = 0.57
Table S327. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
GNA13 MUTATED | 0 | 1 | 3 | 7 |
GNA13 WILD-TYPE | 93 | 42 | 124 | 112 |
P value = 0.809 (Fisher's exact test), Q value = 1
Table S328. Gene #33: 'GNA13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
GNA13 MUTATED | 3 | 1 | 3 | 3 | 0 | 1 |
GNA13 WILD-TYPE | 71 | 46 | 85 | 62 | 27 | 80 |
P value = 0.236 (Fisher's exact test), Q value = 0.79
Table S329. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
METTL3 MUTATED | 5 | 8 | 1 | 3 |
METTL3 WILD-TYPE | 157 | 129 | 58 | 31 |
P value = 0.641 (Fisher's exact test), Q value = 1
Table S330. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
METTL3 MUTATED | 4 | 7 | 3 | 3 |
METTL3 WILD-TYPE | 131 | 105 | 66 | 76 |
P value = 0.333 (Fisher's exact test), Q value = 0.86
Table S331. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
METTL3 MUTATED | 5 | 10 | 2 |
METTL3 WILD-TYPE | 109 | 163 | 102 |
P value = 0.222 (Fisher's exact test), Q value = 0.78
Table S332. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
METTL3 MUTATED | 7 | 6 | 4 |
METTL3 WILD-TYPE | 109 | 100 | 165 |
P value = 0.264 (Fisher's exact test), Q value = 0.81
Table S333. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
METTL3 MUTATED | 4 | 2 | 11 |
METTL3 WILD-TYPE | 115 | 94 | 166 |
P value = 0.0402 (Fisher's exact test), Q value = 0.46
Table S334. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
METTL3 MUTATED | 2 | 1 | 4 | 7 | 3 |
METTL3 WILD-TYPE | 84 | 98 | 85 | 58 | 50 |
Figure S62. Get High-res Image Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1
Table S335. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
METTL3 MUTATED | 2 | 1 | 7 | 6 |
METTL3 WILD-TYPE | 91 | 42 | 120 | 113 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S336. Gene #34: 'METTL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
METTL3 MUTATED | 2 | 1 | 7 | 4 | 1 | 1 |
METTL3 WILD-TYPE | 72 | 46 | 81 | 61 | 26 | 80 |
P value = 0.312 (Fisher's exact test), Q value = 0.84
Table S337. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ERBB3 MUTATED | 12 | 19 | 6 | 4 |
ERBB3 WILD-TYPE | 150 | 118 | 53 | 30 |
P value = 0.385 (Fisher's exact test), Q value = 0.89
Table S338. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ERBB3 MUTATED | 10 | 15 | 6 | 10 |
ERBB3 WILD-TYPE | 125 | 97 | 63 | 69 |
P value = 0.59 (Fisher's exact test), Q value = 0.99
Table S339. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ERBB3 MUTATED | 6 | 3 | 3 | 1 | 1 |
ERBB3 WILD-TYPE | 31 | 26 | 33 | 4 | 19 |
P value = 0.398 (Fisher's exact test), Q value = 0.9
Table S340. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ERBB3 MUTATED | 6 | 6 | 1 | 1 |
ERBB3 WILD-TYPE | 37 | 32 | 26 | 18 |
P value = 0.381 (Fisher's exact test), Q value = 0.89
Table S341. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ERBB3 MUTATED | 8 | 21 | 11 |
ERBB3 WILD-TYPE | 106 | 152 | 93 |
P value = 0.219 (Fisher's exact test), Q value = 0.78
Table S342. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ERBB3 MUTATED | 8 | 15 | 17 |
ERBB3 WILD-TYPE | 108 | 91 | 152 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S343. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ERBB3 MUTATED | 13 | 8 | 20 |
ERBB3 WILD-TYPE | 106 | 88 | 157 |
P value = 0.898 (Fisher's exact test), Q value = 1
Table S344. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ERBB3 MUTATED | 11 | 10 | 9 | 5 | 6 |
ERBB3 WILD-TYPE | 75 | 89 | 80 | 60 | 47 |
P value = 0.877 (Fisher's exact test), Q value = 1
Table S345. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ERBB3 MUTATED | 9 | 3 | 14 | 14 |
ERBB3 WILD-TYPE | 84 | 40 | 113 | 105 |
P value = 0.688 (Fisher's exact test), Q value = 1
Table S346. Gene #35: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ERBB3 MUTATED | 9 | 3 | 11 | 4 | 3 | 10 |
ERBB3 WILD-TYPE | 65 | 44 | 77 | 61 | 24 | 71 |
P value = 0.0284 (Fisher's exact test), Q value = 0.44
Table S347. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RUNX1 MUTATED | 2 | 10 | 2 | 0 |
RUNX1 WILD-TYPE | 160 | 127 | 57 | 34 |
Figure S63. Get High-res Image Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.95
Table S348. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RUNX1 MUTATED | 4 | 6 | 3 | 1 |
RUNX1 WILD-TYPE | 131 | 106 | 66 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
Table S349. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RUNX1 MUTATED | 1 | 1 | 1 | 0 | 0 |
RUNX1 WILD-TYPE | 36 | 28 | 35 | 5 | 20 |
P value = 0.19 (Fisher's exact test), Q value = 0.74
Table S350. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RUNX1 MUTATED | 0 | 1 | 2 | 0 |
RUNX1 WILD-TYPE | 43 | 37 | 25 | 19 |
P value = 0.193 (Fisher's exact test), Q value = 0.74
Table S351. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RUNX1 MUTATED | 6 | 3 | 5 |
RUNX1 WILD-TYPE | 108 | 170 | 99 |
P value = 0.222 (Fisher's exact test), Q value = 0.78
Table S352. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RUNX1 MUTATED | 5 | 1 | 8 |
RUNX1 WILD-TYPE | 111 | 105 | 161 |
P value = 0.621 (Fisher's exact test), Q value = 1
Table S353. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RUNX1 MUTATED | 3 | 2 | 8 |
RUNX1 WILD-TYPE | 116 | 94 | 169 |
P value = 0.775 (Fisher's exact test), Q value = 1
Table S354. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RUNX1 MUTATED | 4 | 2 | 2 | 3 | 2 |
RUNX1 WILD-TYPE | 82 | 97 | 87 | 62 | 51 |
P value = 0.912 (Fisher's exact test), Q value = 1
Table S355. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RUNX1 MUTATED | 4 | 1 | 5 | 3 |
RUNX1 WILD-TYPE | 89 | 42 | 122 | 116 |
P value = 0.62 (Fisher's exact test), Q value = 1
Table S356. Gene #36: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RUNX1 MUTATED | 1 | 1 | 3 | 4 | 0 | 4 |
RUNX1 WILD-TYPE | 73 | 46 | 85 | 61 | 27 | 77 |
P value = 0.0867 (Fisher's exact test), Q value = 0.57
Table S357. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
MBD1 MUTATED | 2 | 5 | 4 | 2 |
MBD1 WILD-TYPE | 160 | 132 | 55 | 32 |
P value = 0.979 (Fisher's exact test), Q value = 1
Table S358. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
MBD1 MUTATED | 4 | 4 | 2 | 3 |
MBD1 WILD-TYPE | 131 | 108 | 67 | 76 |
P value = 0.812 (Fisher's exact test), Q value = 1
Table S359. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
MBD1 MUTATED | 1 | 1 | 3 | 0 | 1 |
MBD1 WILD-TYPE | 36 | 28 | 33 | 5 | 19 |
P value = 0.715 (Fisher's exact test), Q value = 1
Table S360. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
MBD1 MUTATED | 1 | 2 | 2 | 1 |
MBD1 WILD-TYPE | 42 | 36 | 25 | 18 |
P value = 0.593 (Fisher's exact test), Q value = 0.99
Table S361. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
MBD1 MUTATED | 5 | 4 | 4 |
MBD1 WILD-TYPE | 109 | 169 | 100 |
P value = 0.518 (Fisher's exact test), Q value = 0.98
Table S362. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
MBD1 MUTATED | 2 | 4 | 7 |
MBD1 WILD-TYPE | 114 | 102 | 162 |
P value = 0.287 (Fisher's exact test), Q value = 0.83
Table S363. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
MBD1 MUTATED | 3 | 1 | 8 |
MBD1 WILD-TYPE | 116 | 95 | 169 |
P value = 0.553 (Fisher's exact test), Q value = 0.98
Table S364. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
MBD1 MUTATED | 3 | 1 | 3 | 2 | 3 |
MBD1 WILD-TYPE | 83 | 98 | 86 | 63 | 50 |
P value = 0.462 (Fisher's exact test), Q value = 0.94
Table S365. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
MBD1 MUTATED | 5 | 1 | 3 | 2 |
MBD1 WILD-TYPE | 88 | 42 | 124 | 117 |
P value = 0.508 (Fisher's exact test), Q value = 0.98
Table S366. Gene #37: 'MBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
MBD1 MUTATED | 3 | 1 | 3 | 0 | 0 | 4 |
MBD1 WILD-TYPE | 71 | 46 | 85 | 65 | 27 | 77 |
P value = 0.541 (Fisher's exact test), Q value = 0.98
Table S367. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FOXQ1 MUTATED | 6 | 7 | 1 | 0 |
FOXQ1 WILD-TYPE | 156 | 130 | 58 | 34 |
P value = 0.66 (Fisher's exact test), Q value = 1
Table S368. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FOXQ1 MUTATED | 5 | 5 | 3 | 1 |
FOXQ1 WILD-TYPE | 130 | 107 | 66 | 78 |
P value = 0.53 (Fisher's exact test), Q value = 0.98
Table S369. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FOXQ1 MUTATED | 2 | 0 | 2 | 0 | 2 |
FOXQ1 WILD-TYPE | 35 | 29 | 34 | 5 | 18 |
P value = 0.264 (Fisher's exact test), Q value = 0.81
Table S370. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FOXQ1 MUTATED | 3 | 1 | 0 | 2 |
FOXQ1 WILD-TYPE | 40 | 37 | 27 | 17 |
P value = 0.303 (Fisher's exact test), Q value = 0.84
Table S371. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FOXQ1 MUTATED | 2 | 9 | 3 |
FOXQ1 WILD-TYPE | 112 | 164 | 101 |
P value = 0.886 (Fisher's exact test), Q value = 1
Table S372. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FOXQ1 MUTATED | 5 | 3 | 6 |
FOXQ1 WILD-TYPE | 111 | 103 | 163 |
P value = 0.935 (Fisher's exact test), Q value = 1
Table S373. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FOXQ1 MUTATED | 3 | 3 | 7 |
FOXQ1 WILD-TYPE | 116 | 93 | 170 |
P value = 0.904 (Fisher's exact test), Q value = 1
Table S374. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FOXQ1 MUTATED | 3 | 2 | 4 | 2 | 2 |
FOXQ1 WILD-TYPE | 83 | 97 | 85 | 63 | 51 |
P value = 0.933 (Fisher's exact test), Q value = 1
Table S375. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FOXQ1 MUTATED | 3 | 2 | 4 | 4 |
FOXQ1 WILD-TYPE | 90 | 41 | 123 | 115 |
P value = 0.985 (Fisher's exact test), Q value = 1
Table S376. Gene #38: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FOXQ1 MUTATED | 3 | 2 | 3 | 2 | 0 | 3 |
FOXQ1 WILD-TYPE | 71 | 45 | 85 | 63 | 27 | 78 |
P value = 0.845 (Fisher's exact test), Q value = 1
Table S377. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RPTN MUTATED | 5 | 7 | 2 | 1 |
RPTN WILD-TYPE | 157 | 130 | 57 | 33 |
P value = 0.89 (Fisher's exact test), Q value = 1
Table S378. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RPTN MUTATED | 6 | 5 | 2 | 2 |
RPTN WILD-TYPE | 129 | 107 | 67 | 77 |
P value = 0.0902 (Fisher's exact test), Q value = 0.58
Table S379. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RPTN MUTATED | 1 | 1 | 0 | 0 | 3 |
RPTN WILD-TYPE | 36 | 28 | 36 | 5 | 17 |
P value = 0.329 (Fisher's exact test), Q value = 0.85
Table S380. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RPTN MUTATED | 2 | 1 | 0 | 2 |
RPTN WILD-TYPE | 41 | 37 | 27 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
Table S381. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RPTN MUTATED | 4 | 7 | 4 |
RPTN WILD-TYPE | 110 | 166 | 100 |
P value = 1 (Fisher's exact test), Q value = 1
Table S382. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RPTN MUTATED | 4 | 4 | 7 |
RPTN WILD-TYPE | 112 | 102 | 162 |
P value = 0.75 (Fisher's exact test), Q value = 1
Table S383. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RPTN MUTATED | 4 | 5 | 6 |
RPTN WILD-TYPE | 115 | 91 | 171 |
P value = 0.11 (Fisher's exact test), Q value = 0.62
Table S384. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RPTN MUTATED | 3 | 8 | 3 | 0 | 1 |
RPTN WILD-TYPE | 83 | 91 | 86 | 65 | 52 |
P value = 0.865 (Fisher's exact test), Q value = 1
Table S385. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RPTN MUTATED | 5 | 1 | 5 | 4 |
RPTN WILD-TYPE | 88 | 42 | 122 | 115 |
P value = 0.653 (Fisher's exact test), Q value = 1
Table S386. Gene #39: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RPTN MUTATED | 4 | 1 | 4 | 1 | 0 | 5 |
RPTN WILD-TYPE | 70 | 46 | 84 | 64 | 27 | 76 |
P value = 0.0487 (Fisher's exact test), Q value = 0.51
Table S387. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SF1 MUTATED | 2 | 8 | 0 | 0 |
SF1 WILD-TYPE | 160 | 129 | 59 | 34 |
Figure S64. Get High-res Image Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1
Table S388. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SF1 MUTATED | 3 | 3 | 3 | 1 |
SF1 WILD-TYPE | 132 | 109 | 66 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
Table S389. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SF1 MUTATED | 1 | 1 | 1 | 0 | 0 |
SF1 WILD-TYPE | 36 | 28 | 35 | 5 | 20 |
P value = 0.189 (Fisher's exact test), Q value = 0.74
Table S390. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SF1 MUTATED | 0 | 1 | 2 | 0 |
SF1 WILD-TYPE | 43 | 37 | 25 | 19 |
P value = 0.778 (Fisher's exact test), Q value = 1
Table S391. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SF1 MUTATED | 4 | 4 | 2 |
SF1 WILD-TYPE | 110 | 169 | 102 |
P value = 1 (Fisher's exact test), Q value = 1
Table S392. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SF1 MUTATED | 3 | 3 | 4 |
SF1 WILD-TYPE | 113 | 103 | 165 |
P value = 0.00793 (Fisher's exact test), Q value = 0.26
Table S393. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SF1 MUTATED | 0 | 6 | 4 |
SF1 WILD-TYPE | 119 | 90 | 173 |
Figure S65. Get High-res Image Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.76
Table S394. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SF1 MUTATED | 1 | 6 | 2 | 1 | 0 |
SF1 WILD-TYPE | 85 | 93 | 87 | 64 | 53 |
P value = 0.167 (Fisher's exact test), Q value = 0.71
Table S395. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SF1 MUTATED | 2 | 3 | 4 | 1 |
SF1 WILD-TYPE | 91 | 40 | 123 | 118 |
P value = 0.0148 (Fisher's exact test), Q value = 0.32
Table S396. Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SF1 MUTATED | 0 | 4 | 1 | 0 | 1 | 4 |
SF1 WILD-TYPE | 74 | 43 | 87 | 65 | 26 | 77 |
Figure S66. Get High-res Image Gene #40: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1
Table S397. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
DNAH6 MUTATED | 6 | 8 | 1 | 1 |
DNAH6 WILD-TYPE | 156 | 129 | 58 | 33 |
P value = 0.103 (Fisher's exact test), Q value = 0.61
Table S398. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
DNAH6 MUTATED | 3 | 7 | 5 | 1 |
DNAH6 WILD-TYPE | 132 | 105 | 64 | 78 |
P value = 0.534 (Fisher's exact test), Q value = 0.98
Table S399. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
DNAH6 MUTATED | 1 | 2 | 0 | 0 | 1 |
DNAH6 WILD-TYPE | 36 | 27 | 36 | 5 | 19 |
P value = 0.625 (Fisher's exact test), Q value = 1
Table S400. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
DNAH6 MUTATED | 1 | 2 | 0 | 1 |
DNAH6 WILD-TYPE | 42 | 36 | 27 | 18 |
P value = 0.00883 (Fisher's exact test), Q value = 0.27
Table S401. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
DNAH6 MUTATED | 4 | 12 | 0 |
DNAH6 WILD-TYPE | 110 | 161 | 104 |
Figure S67. Get High-res Image Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.28
Table S402. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
DNAH6 MUTATED | 5 | 9 | 2 |
DNAH6 WILD-TYPE | 111 | 97 | 167 |
Figure S68. Get High-res Image Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1
Table S403. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
DNAH6 MUTATED | 5 | 4 | 7 |
DNAH6 WILD-TYPE | 114 | 92 | 170 |
P value = 0.0337 (Fisher's exact test), Q value = 0.44
Table S404. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
DNAH6 MUTATED | 0 | 5 | 2 | 5 | 4 |
DNAH6 WILD-TYPE | 86 | 94 | 87 | 60 | 49 |
Figure S69. Get High-res Image Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.52
Table S405. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
DNAH6 MUTATED | 0 | 2 | 8 | 5 |
DNAH6 WILD-TYPE | 93 | 41 | 119 | 114 |
P value = 0.0167 (Fisher's exact test), Q value = 0.33
Table S406. Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
DNAH6 MUTATED | 5 | 2 | 6 | 0 | 2 | 0 |
DNAH6 WILD-TYPE | 69 | 45 | 82 | 65 | 25 | 81 |
Figure S70. Get High-res Image Gene #41: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.58
Table S407. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZNF185 MUTATED | 1 | 1 | 1 | 2 |
ZNF185 WILD-TYPE | 161 | 136 | 58 | 32 |
P value = 0.561 (Fisher's exact test), Q value = 0.98
Table S408. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZNF185 MUTATED | 1 | 2 | 0 | 2 |
ZNF185 WILD-TYPE | 134 | 110 | 69 | 77 |
P value = 0.612 (Fisher's exact test), Q value = 1
Table S409. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZNF185 MUTATED | 2 | 1 | 2 |
ZNF185 WILD-TYPE | 112 | 172 | 102 |
P value = 0.865 (Fisher's exact test), Q value = 1
Table S410. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZNF185 MUTATED | 1 | 1 | 3 |
ZNF185 WILD-TYPE | 115 | 105 | 166 |
P value = 0.45 (Fisher's exact test), Q value = 0.94
Table S411. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZNF185 MUTATED | 1 | 0 | 4 |
ZNF185 WILD-TYPE | 118 | 96 | 173 |
P value = 0.181 (Fisher's exact test), Q value = 0.74
Table S412. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZNF185 MUTATED | 3 | 0 | 1 | 0 | 1 |
ZNF185 WILD-TYPE | 83 | 99 | 88 | 65 | 52 |
P value = 0.805 (Fisher's exact test), Q value = 1
Table S413. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZNF185 MUTATED | 2 | 0 | 1 | 1 |
ZNF185 WILD-TYPE | 91 | 43 | 126 | 118 |
P value = 0.788 (Fisher's exact test), Q value = 1
Table S414. Gene #42: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZNF185 MUTATED | 0 | 0 | 1 | 1 | 0 | 2 |
ZNF185 WILD-TYPE | 74 | 47 | 87 | 64 | 27 | 79 |
P value = 0.564 (Fisher's exact test), Q value = 0.98
Table S415. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ATM MUTATED | 25 | 15 | 7 | 6 |
ATM WILD-TYPE | 137 | 122 | 52 | 28 |
P value = 0.687 (Fisher's exact test), Q value = 1
Table S416. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ATM MUTATED | 21 | 16 | 8 | 8 |
ATM WILD-TYPE | 114 | 96 | 61 | 71 |
P value = 0.18 (Fisher's exact test), Q value = 0.74
Table S417. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ATM MUTATED | 2 | 3 | 3 | 1 | 5 |
ATM WILD-TYPE | 35 | 26 | 33 | 4 | 15 |
P value = 0.821 (Fisher's exact test), Q value = 1
Table S418. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ATM MUTATED | 5 | 4 | 2 | 3 |
ATM WILD-TYPE | 38 | 34 | 25 | 16 |
P value = 0.618 (Fisher's exact test), Q value = 1
Table S419. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ATM MUTATED | 14 | 27 | 12 |
ATM WILD-TYPE | 100 | 146 | 92 |
P value = 0.654 (Fisher's exact test), Q value = 1
Table S420. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ATM MUTATED | 17 | 16 | 20 |
ATM WILD-TYPE | 99 | 90 | 149 |
P value = 0.0748 (Fisher's exact test), Q value = 0.57
Table S421. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ATM MUTATED | 9 | 16 | 27 |
ATM WILD-TYPE | 110 | 80 | 150 |
P value = 0.212 (Fisher's exact test), Q value = 0.77
Table S422. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ATM MUTATED | 8 | 16 | 11 | 13 | 4 |
ATM WILD-TYPE | 78 | 83 | 78 | 52 | 49 |
P value = 0.223 (Fisher's exact test), Q value = 0.78
Table S423. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ATM MUTATED | 15 | 7 | 20 | 10 |
ATM WILD-TYPE | 78 | 36 | 107 | 109 |
P value = 0.18 (Fisher's exact test), Q value = 0.74
Table S424. Gene #43: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ATM MUTATED | 6 | 8 | 17 | 5 | 5 | 11 |
ATM WILD-TYPE | 68 | 39 | 71 | 60 | 22 | 70 |
P value = 0.278 (Fisher's exact test), Q value = 0.82
Table S425. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
UNC93B1 MUTATED | 1 | 3 | 2 | 1 |
UNC93B1 WILD-TYPE | 161 | 134 | 57 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
Table S426. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
UNC93B1 MUTATED | 3 | 2 | 1 | 1 |
UNC93B1 WILD-TYPE | 132 | 110 | 68 | 78 |
P value = 0.556 (Fisher's exact test), Q value = 0.98
Table S427. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
UNC93B1 MUTATED | 1 | 3 | 3 |
UNC93B1 WILD-TYPE | 113 | 170 | 101 |
P value = 0.889 (Fisher's exact test), Q value = 1
Table S428. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
UNC93B1 MUTATED | 2 | 1 | 4 |
UNC93B1 WILD-TYPE | 114 | 105 | 165 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S429. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
UNC93B1 MUTATED | 3 | 1 | 3 |
UNC93B1 WILD-TYPE | 116 | 95 | 174 |
P value = 0.959 (Fisher's exact test), Q value = 1
Table S430. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
UNC93B1 MUTATED | 2 | 1 | 2 | 1 | 1 |
UNC93B1 WILD-TYPE | 84 | 98 | 87 | 64 | 52 |
P value = 0.716 (Fisher's exact test), Q value = 1
Table S431. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
UNC93B1 MUTATED | 3 | 0 | 2 | 2 |
UNC93B1 WILD-TYPE | 90 | 43 | 125 | 117 |
P value = 0.718 (Fisher's exact test), Q value = 1
Table S432. Gene #44: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
UNC93B1 MUTATED | 1 | 1 | 2 | 0 | 0 | 3 |
UNC93B1 WILD-TYPE | 73 | 46 | 86 | 65 | 27 | 78 |
P value = 0.49 (Fisher's exact test), Q value = 0.96
Table S433. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
UBA52 MUTATED | 4 | 1 | 1 | 1 |
UBA52 WILD-TYPE | 158 | 136 | 58 | 33 |
P value = 0.66 (Fisher's exact test), Q value = 1
Table S434. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
UBA52 MUTATED | 1 | 3 | 1 | 2 |
UBA52 WILD-TYPE | 134 | 109 | 68 | 77 |
P value = 0.715 (Fisher's exact test), Q value = 1
Table S435. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
UBA52 MUTATED | 3 | 3 | 1 |
UBA52 WILD-TYPE | 111 | 170 | 103 |
P value = 0.213 (Fisher's exact test), Q value = 0.77
Table S436. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
UBA52 MUTATED | 4 | 2 | 1 |
UBA52 WILD-TYPE | 112 | 104 | 168 |
P value = 0.288 (Fisher's exact test), Q value = 0.83
Table S437. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
UBA52 MUTATED | 2 | 0 | 5 |
UBA52 WILD-TYPE | 117 | 96 | 172 |
P value = 0.88 (Fisher's exact test), Q value = 1
Table S438. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
UBA52 MUTATED | 1 | 1 | 2 | 2 | 1 |
UBA52 WILD-TYPE | 85 | 98 | 87 | 63 | 52 |
P value = 0.835 (Fisher's exact test), Q value = 1
Table S439. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
UBA52 MUTATED | 1 | 0 | 2 | 3 |
UBA52 WILD-TYPE | 92 | 43 | 125 | 116 |
P value = 0.901 (Fisher's exact test), Q value = 1
Table S440. Gene #45: 'UBA52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
UBA52 MUTATED | 1 | 0 | 2 | 2 | 0 | 1 |
UBA52 WILD-TYPE | 73 | 47 | 86 | 63 | 27 | 80 |
P value = 0.121 (Fisher's exact test), Q value = 0.66
Table S441. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CNOT1 MUTATED | 9 | 9 | 0 | 3 |
CNOT1 WILD-TYPE | 153 | 128 | 59 | 31 |
P value = 0.524 (Fisher's exact test), Q value = 0.98
Table S442. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CNOT1 MUTATED | 5 | 9 | 3 | 4 |
CNOT1 WILD-TYPE | 130 | 103 | 66 | 75 |
P value = 0.415 (Fisher's exact test), Q value = 0.91
Table S443. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CNOT1 MUTATED | 2 | 0 | 4 | 0 | 1 |
CNOT1 WILD-TYPE | 35 | 29 | 32 | 5 | 19 |
P value = 0.86 (Fisher's exact test), Q value = 1
Table S444. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CNOT1 MUTATED | 3 | 1 | 2 | 1 |
CNOT1 WILD-TYPE | 40 | 37 | 25 | 18 |
P value = 0.616 (Fisher's exact test), Q value = 1
Table S445. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CNOT1 MUTATED | 4 | 11 | 5 |
CNOT1 WILD-TYPE | 110 | 162 | 99 |
P value = 0.451 (Fisher's exact test), Q value = 0.94
Table S446. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CNOT1 MUTATED | 5 | 8 | 7 |
CNOT1 WILD-TYPE | 111 | 98 | 162 |
P value = 0.53 (Fisher's exact test), Q value = 0.98
Table S447. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CNOT1 MUTATED | 4 | 6 | 11 |
CNOT1 WILD-TYPE | 115 | 90 | 166 |
P value = 0.715 (Fisher's exact test), Q value = 1
Table S448. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CNOT1 MUTATED | 4 | 5 | 4 | 6 | 2 |
CNOT1 WILD-TYPE | 82 | 94 | 85 | 59 | 51 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S449. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CNOT1 MUTATED | 4 | 2 | 8 | 6 |
CNOT1 WILD-TYPE | 89 | 41 | 119 | 113 |
P value = 0.965 (Fisher's exact test), Q value = 1
Table S450. Gene #46: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CNOT1 MUTATED | 3 | 3 | 5 | 3 | 2 | 4 |
CNOT1 WILD-TYPE | 71 | 44 | 83 | 62 | 25 | 77 |
P value = 0.432 (Fisher's exact test), Q value = 0.92
Table S451. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ERBB2 MUTATED | 17 | 16 | 11 | 4 |
ERBB2 WILD-TYPE | 145 | 121 | 48 | 30 |
P value = 0.43 (Fisher's exact test), Q value = 0.92
Table S452. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ERBB2 MUTATED | 18 | 9 | 10 | 11 |
ERBB2 WILD-TYPE | 117 | 103 | 59 | 68 |
P value = 0.156 (Fisher's exact test), Q value = 0.71
Table S453. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ERBB2 MUTATED | 3 | 0 | 3 | 1 | 0 |
ERBB2 WILD-TYPE | 34 | 29 | 33 | 4 | 20 |
P value = 0.408 (Fisher's exact test), Q value = 0.9
Table S454. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ERBB2 MUTATED | 4 | 1 | 2 | 0 |
ERBB2 WILD-TYPE | 39 | 37 | 25 | 19 |
P value = 0.279 (Fisher's exact test), Q value = 0.83
Table S455. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ERBB2 MUTATED | 15 | 16 | 16 |
ERBB2 WILD-TYPE | 99 | 157 | 88 |
P value = 0.205 (Fisher's exact test), Q value = 0.76
Table S456. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ERBB2 MUTATED | 10 | 11 | 26 |
ERBB2 WILD-TYPE | 106 | 95 | 143 |
P value = 0.759 (Fisher's exact test), Q value = 1
Table S457. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ERBB2 MUTATED | 16 | 11 | 19 |
ERBB2 WILD-TYPE | 103 | 85 | 158 |
P value = 0.185 (Fisher's exact test), Q value = 0.74
Table S458. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ERBB2 MUTATED | 11 | 12 | 10 | 3 | 10 |
ERBB2 WILD-TYPE | 75 | 87 | 79 | 62 | 43 |
P value = 0.186 (Fisher's exact test), Q value = 0.74
Table S459. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ERBB2 MUTATED | 14 | 4 | 9 | 17 |
ERBB2 WILD-TYPE | 79 | 39 | 118 | 102 |
P value = 0.288 (Fisher's exact test), Q value = 0.83
Table S460. Gene #47: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ERBB2 MUTATED | 7 | 5 | 7 | 11 | 1 | 13 |
ERBB2 WILD-TYPE | 67 | 42 | 81 | 54 | 26 | 68 |
P value = 0.556 (Fisher's exact test), Q value = 0.98
Table S461. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FAM47C MUTATED | 7 | 9 | 2 | 3 |
FAM47C WILD-TYPE | 155 | 128 | 57 | 31 |
P value = 0.811 (Fisher's exact test), Q value = 1
Table S462. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FAM47C MUTATED | 8 | 6 | 2 | 5 |
FAM47C WILD-TYPE | 127 | 106 | 67 | 74 |
P value = 0.0574 (Fisher's exact test), Q value = 0.53
Table S463. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FAM47C MUTATED | 0 | 1 | 5 | 0 | 3 |
FAM47C WILD-TYPE | 37 | 28 | 31 | 5 | 17 |
P value = 0.182 (Fisher's exact test), Q value = 0.74
Table S464. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FAM47C MUTATED | 1 | 2 | 4 | 2 |
FAM47C WILD-TYPE | 42 | 36 | 23 | 17 |
P value = 0.212 (Fisher's exact test), Q value = 0.77
Table S465. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FAM47C MUTATED | 4 | 8 | 9 |
FAM47C WILD-TYPE | 110 | 165 | 95 |
P value = 0.718 (Fisher's exact test), Q value = 1
Table S466. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FAM47C MUTATED | 7 | 4 | 10 |
FAM47C WILD-TYPE | 109 | 102 | 159 |
P value = 0.252 (Fisher's exact test), Q value = 0.8
Table S467. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FAM47C MUTATED | 7 | 2 | 12 |
FAM47C WILD-TYPE | 112 | 94 | 165 |
P value = 0.165 (Fisher's exact test), Q value = 0.71
Table S468. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FAM47C MUTATED | 8 | 2 | 3 | 5 | 3 |
FAM47C WILD-TYPE | 78 | 97 | 86 | 60 | 50 |
P value = 0.831 (Fisher's exact test), Q value = 1
Table S469. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FAM47C MUTATED | 6 | 1 | 6 | 7 |
FAM47C WILD-TYPE | 87 | 42 | 121 | 112 |
P value = 0.742 (Fisher's exact test), Q value = 1
Table S470. Gene #48: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FAM47C MUTATED | 4 | 1 | 5 | 4 | 0 | 6 |
FAM47C WILD-TYPE | 70 | 46 | 83 | 61 | 27 | 75 |
P value = 0.13 (Fisher's exact test), Q value = 0.68
Table S471. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SF3B1 MUTATED | 7 | 13 | 4 | 0 |
SF3B1 WILD-TYPE | 155 | 124 | 55 | 34 |
P value = 0.79 (Fisher's exact test), Q value = 1
Table S472. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SF3B1 MUTATED | 8 | 9 | 3 | 4 |
SF3B1 WILD-TYPE | 127 | 103 | 66 | 75 |
P value = 0.267 (Fisher's exact test), Q value = 0.81
Table S473. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SF3B1 MUTATED | 3 | 0 | 3 | 1 | 1 |
SF3B1 WILD-TYPE | 34 | 29 | 33 | 4 | 19 |
P value = 0.429 (Fisher's exact test), Q value = 0.92
Table S474. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SF3B1 MUTATED | 5 | 1 | 1 | 1 |
SF3B1 WILD-TYPE | 38 | 37 | 26 | 18 |
P value = 0.832 (Fisher's exact test), Q value = 1
Table S475. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SF3B1 MUTATED | 7 | 12 | 5 |
SF3B1 WILD-TYPE | 107 | 161 | 99 |
P value = 0.615 (Fisher's exact test), Q value = 1
Table S476. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SF3B1 MUTATED | 5 | 8 | 11 |
SF3B1 WILD-TYPE | 111 | 98 | 158 |
P value = 0.962 (Fisher's exact test), Q value = 1
Table S477. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SF3B1 MUTATED | 7 | 6 | 10 |
SF3B1 WILD-TYPE | 112 | 90 | 167 |
P value = 0.936 (Fisher's exact test), Q value = 1
Table S478. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SF3B1 MUTATED | 4 | 6 | 6 | 3 | 4 |
SF3B1 WILD-TYPE | 82 | 93 | 83 | 62 | 49 |
P value = 0.22 (Fisher's exact test), Q value = 0.78
Table S479. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SF3B1 MUTATED | 2 | 4 | 7 | 9 |
SF3B1 WILD-TYPE | 91 | 39 | 120 | 110 |
P value = 0.33 (Fisher's exact test), Q value = 0.85
Table S480. Gene #49: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SF3B1 MUTATED | 3 | 4 | 5 | 7 | 1 | 2 |
SF3B1 WILD-TYPE | 71 | 43 | 83 | 58 | 26 | 79 |
P value = 0.111 (Fisher's exact test), Q value = 0.62
Table S481. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
EPS8 MUTATED | 2 | 7 | 3 | 2 |
EPS8 WILD-TYPE | 160 | 130 | 56 | 32 |
P value = 0.515 (Fisher's exact test), Q value = 0.98
Table S482. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
EPS8 MUTATED | 5 | 6 | 2 | 1 |
EPS8 WILD-TYPE | 130 | 106 | 67 | 78 |
P value = 0.782 (Fisher's exact test), Q value = 1
Table S483. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
EPS8 MUTATED | 5 | 5 | 4 |
EPS8 WILD-TYPE | 109 | 168 | 100 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S484. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
EPS8 MUTATED | 4 | 3 | 7 |
EPS8 WILD-TYPE | 112 | 103 | 162 |
P value = 0.0634 (Fisher's exact test), Q value = 0.55
Table S485. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
EPS8 MUTATED | 8 | 2 | 3 |
EPS8 WILD-TYPE | 111 | 94 | 174 |
P value = 0.676 (Fisher's exact test), Q value = 1
Table S486. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
EPS8 MUTATED | 4 | 2 | 2 | 2 | 3 |
EPS8 WILD-TYPE | 82 | 97 | 87 | 63 | 50 |
P value = 0.192 (Fisher's exact test), Q value = 0.74
Table S487. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
EPS8 MUTATED | 3 | 0 | 2 | 7 |
EPS8 WILD-TYPE | 90 | 43 | 125 | 112 |
P value = 0.273 (Fisher's exact test), Q value = 0.81
Table S488. Gene #50: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
EPS8 MUTATED | 4 | 0 | 1 | 4 | 0 | 3 |
EPS8 WILD-TYPE | 70 | 47 | 87 | 61 | 27 | 78 |
P value = 0.841 (Fisher's exact test), Q value = 1
Table S489. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
EPHA2 MUTATED | 7 | 8 | 2 | 2 |
EPHA2 WILD-TYPE | 155 | 129 | 57 | 32 |
P value = 0.0196 (Fisher's exact test), Q value = 0.35
Table S490. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
EPHA2 MUTATED | 4 | 10 | 0 | 5 |
EPHA2 WILD-TYPE | 131 | 102 | 69 | 74 |
Figure S71. Get High-res Image Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.94
Table S491. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
EPHA2 MUTATED | 2 | 1 | 2 | 1 | 0 |
EPHA2 WILD-TYPE | 35 | 28 | 34 | 4 | 20 |
P value = 0.938 (Fisher's exact test), Q value = 1
Table S492. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
EPHA2 MUTATED | 3 | 1 | 1 | 1 |
EPHA2 WILD-TYPE | 40 | 37 | 26 | 18 |
P value = 0.165 (Fisher's exact test), Q value = 0.71
Table S493. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
EPHA2 MUTATED | 2 | 9 | 7 |
EPHA2 WILD-TYPE | 112 | 164 | 97 |
P value = 1 (Fisher's exact test), Q value = 1
Table S494. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
EPHA2 MUTATED | 5 | 5 | 8 |
EPHA2 WILD-TYPE | 111 | 101 | 161 |
P value = 0.447 (Fisher's exact test), Q value = 0.94
Table S495. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
EPHA2 MUTATED | 7 | 6 | 6 |
EPHA2 WILD-TYPE | 112 | 90 | 171 |
P value = 0.16 (Fisher's exact test), Q value = 0.71
Table S496. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
EPHA2 MUTATED | 5 | 7 | 1 | 5 | 1 |
EPHA2 WILD-TYPE | 81 | 92 | 88 | 60 | 52 |
P value = 0.586 (Fisher's exact test), Q value = 0.99
Table S497. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
EPHA2 MUTATED | 7 | 2 | 6 | 4 |
EPHA2 WILD-TYPE | 86 | 41 | 121 | 115 |
P value = 0.37 (Fisher's exact test), Q value = 0.89
Table S498. Gene #51: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
EPHA2 MUTATED | 1 | 3 | 5 | 2 | 1 | 7 |
EPHA2 WILD-TYPE | 73 | 44 | 83 | 63 | 26 | 74 |
P value = 0.0559 (Fisher's exact test), Q value = 0.52
Table S499. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
OGDH MUTATED | 4 | 10 | 5 | 0 |
OGDH WILD-TYPE | 158 | 127 | 54 | 34 |
P value = 0.247 (Fisher's exact test), Q value = 0.79
Table S500. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
OGDH MUTATED | 10 | 5 | 3 | 1 |
OGDH WILD-TYPE | 125 | 107 | 66 | 78 |
P value = 0.144 (Fisher's exact test), Q value = 0.71
Table S501. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
OGDH MUTATED | 1 | 0 | 1 | 1 | 0 |
OGDH WILD-TYPE | 36 | 29 | 35 | 4 | 20 |
P value = 0.326 (Fisher's exact test), Q value = 0.85
Table S502. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
OGDH MUTATED | 2 | 0 | 0 | 1 |
OGDH WILD-TYPE | 41 | 38 | 27 | 18 |
P value = 0.677 (Fisher's exact test), Q value = 1
Table S503. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
OGDH MUTATED | 7 | 7 | 4 |
OGDH WILD-TYPE | 107 | 166 | 100 |
P value = 0.866 (Fisher's exact test), Q value = 1
Table S504. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
OGDH MUTATED | 5 | 4 | 9 |
OGDH WILD-TYPE | 111 | 102 | 160 |
P value = 0.446 (Fisher's exact test), Q value = 0.94
Table S505. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
OGDH MUTATED | 7 | 6 | 6 |
OGDH WILD-TYPE | 112 | 90 | 171 |
P value = 0.315 (Fisher's exact test), Q value = 0.84
Table S506. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
OGDH MUTATED | 5 | 6 | 1 | 3 | 4 |
OGDH WILD-TYPE | 81 | 93 | 88 | 62 | 49 |
P value = 0.262 (Fisher's exact test), Q value = 0.81
Table S507. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
OGDH MUTATED | 7 | 3 | 3 | 6 |
OGDH WILD-TYPE | 86 | 40 | 124 | 113 |
P value = 0.636 (Fisher's exact test), Q value = 1
Table S508. Gene #52: 'OGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
OGDH MUTATED | 2 | 3 | 4 | 5 | 0 | 5 |
OGDH WILD-TYPE | 72 | 44 | 84 | 60 | 27 | 76 |
P value = 0.56 (Fisher's exact test), Q value = 0.98
Table S509. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SCARF2 MUTATED | 3 | 4 | 0 | 1 |
SCARF2 WILD-TYPE | 159 | 133 | 59 | 33 |
P value = 0.0652 (Fisher's exact test), Q value = 0.55
Table S510. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SCARF2 MUTATED | 0 | 3 | 3 | 2 |
SCARF2 WILD-TYPE | 135 | 109 | 66 | 77 |
P value = 0.0348 (Fisher's exact test), Q value = 0.44
Table S511. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SCARF2 MUTATED | 0 | 7 | 1 |
SCARF2 WILD-TYPE | 114 | 166 | 103 |
Figure S72. Get High-res Image Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.71
Table S512. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SCARF2 MUTATED | 3 | 4 | 1 |
SCARF2 WILD-TYPE | 113 | 102 | 168 |
P value = 0.661 (Fisher's exact test), Q value = 1
Table S513. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SCARF2 MUTATED | 2 | 3 | 3 |
SCARF2 WILD-TYPE | 117 | 93 | 174 |
P value = 0.22 (Fisher's exact test), Q value = 0.78
Table S514. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SCARF2 MUTATED | 0 | 2 | 1 | 3 | 2 |
SCARF2 WILD-TYPE | 86 | 97 | 88 | 62 | 51 |
P value = 0.336 (Fisher's exact test), Q value = 0.86
Table S515. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SCARF2 MUTATED | 0 | 1 | 4 | 2 |
SCARF2 WILD-TYPE | 93 | 42 | 123 | 117 |
P value = 0.569 (Fisher's exact test), Q value = 0.98
Table S516. Gene #53: 'SCARF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SCARF2 MUTATED | 1 | 1 | 3 | 2 | 0 | 0 |
SCARF2 WILD-TYPE | 73 | 46 | 85 | 63 | 27 | 81 |
P value = 0.0182 (Fisher's exact test), Q value = 0.34
Table S517. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SSH3 MUTATED | 10 | 2 | 0 | 3 |
SSH3 WILD-TYPE | 152 | 135 | 59 | 31 |
Figure S73. Get High-res Image Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.59
Table S518. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SSH3 MUTATED | 2 | 3 | 5 | 5 |
SSH3 WILD-TYPE | 133 | 109 | 64 | 74 |
P value = 0.533 (Fisher's exact test), Q value = 0.98
Table S519. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SSH3 MUTATED | 2 | 1 | 0 | 0 | 0 |
SSH3 WILD-TYPE | 35 | 28 | 36 | 5 | 20 |
P value = 0.868 (Fisher's exact test), Q value = 1
Table S520. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SSH3 MUTATED | 2 | 1 | 0 | 0 |
SSH3 WILD-TYPE | 41 | 37 | 27 | 19 |
P value = 0.0496 (Fisher's exact test), Q value = 0.51
Table S521. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SSH3 MUTATED | 1 | 11 | 3 |
SSH3 WILD-TYPE | 113 | 162 | 101 |
Figure S74. Get High-res Image Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.9
Table S522. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SSH3 MUTATED | 6 | 5 | 4 |
SSH3 WILD-TYPE | 110 | 101 | 165 |
P value = 0.0699 (Fisher's exact test), Q value = 0.57
Table S523. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SSH3 MUTATED | 1 | 6 | 8 |
SSH3 WILD-TYPE | 118 | 90 | 169 |
P value = 0.103 (Fisher's exact test), Q value = 0.61
Table S524. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SSH3 MUTATED | 0 | 6 | 4 | 4 | 1 |
SSH3 WILD-TYPE | 86 | 93 | 85 | 61 | 52 |
P value = 0.338 (Fisher's exact test), Q value = 0.86
Table S525. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SSH3 MUTATED | 2 | 3 | 7 | 3 |
SSH3 WILD-TYPE | 91 | 40 | 120 | 116 |
P value = 0.256 (Fisher's exact test), Q value = 0.8
Table S526. Gene #54: 'SSH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SSH3 MUTATED | 1 | 3 | 4 | 4 | 2 | 1 |
SSH3 WILD-TYPE | 73 | 44 | 84 | 61 | 25 | 80 |
P value = 0.906 (Fisher's exact test), Q value = 1
Table S527. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
HLA-A MUTATED | 3 | 2 | 0 | 0 |
HLA-A WILD-TYPE | 159 | 135 | 59 | 34 |
P value = 0.303 (Fisher's exact test), Q value = 0.84
Table S528. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
HLA-A MUTATED | 2 | 0 | 2 | 1 |
HLA-A WILD-TYPE | 133 | 112 | 67 | 78 |
P value = 0.864 (Fisher's exact test), Q value = 1
Table S529. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
HLA-A MUTATED | 2 | 2 | 1 |
HLA-A WILD-TYPE | 112 | 171 | 103 |
P value = 1 (Fisher's exact test), Q value = 1
Table S530. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
HLA-A MUTATED | 2 | 1 | 2 |
HLA-A WILD-TYPE | 114 | 105 | 167 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S531. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
HLA-A MUTATED | 1 | 2 | 2 |
HLA-A WILD-TYPE | 118 | 94 | 175 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S532. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
HLA-A MUTATED | 1 | 2 | 0 | 1 | 1 |
HLA-A WILD-TYPE | 85 | 97 | 89 | 64 | 52 |
P value = 0.69 (Fisher's exact test), Q value = 1
Table S533. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
HLA-A MUTATED | 1 | 1 | 1 | 2 |
HLA-A WILD-TYPE | 92 | 42 | 126 | 117 |
P value = 0.495 (Fisher's exact test), Q value = 0.96
Table S534. Gene #55: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
HLA-A MUTATED | 1 | 1 | 0 | 1 | 1 | 1 |
HLA-A WILD-TYPE | 73 | 46 | 88 | 64 | 26 | 80 |
P value = 0.715 (Fisher's exact test), Q value = 1
Table S535. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
PARD3 MUTATED | 8 | 8 | 4 | 3 |
PARD3 WILD-TYPE | 154 | 129 | 55 | 31 |
P value = 0.544 (Fisher's exact test), Q value = 0.98
Table S536. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
PARD3 MUTATED | 9 | 8 | 4 | 2 |
PARD3 WILD-TYPE | 126 | 104 | 65 | 77 |
P value = 0.824 (Fisher's exact test), Q value = 1
Table S537. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
PARD3 MUTATED | 3 | 2 | 2 | 0 | 0 |
PARD3 WILD-TYPE | 34 | 27 | 34 | 5 | 20 |
P value = 0.263 (Fisher's exact test), Q value = 0.81
Table S538. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
PARD3 MUTATED | 3 | 4 | 0 | 0 |
PARD3 WILD-TYPE | 40 | 34 | 27 | 19 |
P value = 0.892 (Fisher's exact test), Q value = 1
Table S539. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
PARD3 MUTATED | 7 | 11 | 5 |
PARD3 WILD-TYPE | 107 | 162 | 99 |
P value = 0.762 (Fisher's exact test), Q value = 1
Table S540. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
PARD3 MUTATED | 6 | 5 | 12 |
PARD3 WILD-TYPE | 110 | 101 | 157 |
P value = 0.157 (Fisher's exact test), Q value = 0.71
Table S541. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
PARD3 MUTATED | 3 | 8 | 10 |
PARD3 WILD-TYPE | 116 | 88 | 167 |
P value = 0.606 (Fisher's exact test), Q value = 1
Table S542. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
PARD3 MUTATED | 5 | 7 | 2 | 4 | 3 |
PARD3 WILD-TYPE | 81 | 92 | 87 | 61 | 50 |
P value = 0.534 (Fisher's exact test), Q value = 0.98
Table S543. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
PARD3 MUTATED | 5 | 4 | 5 | 5 |
PARD3 WILD-TYPE | 88 | 39 | 122 | 114 |
P value = 0.754 (Fisher's exact test), Q value = 1
Table S544. Gene #56: 'PARD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
PARD3 MUTATED | 4 | 4 | 5 | 3 | 0 | 3 |
PARD3 WILD-TYPE | 70 | 43 | 83 | 62 | 27 | 78 |
P value = 0.0792 (Fisher's exact test), Q value = 0.57
Table S545. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
BAP1 MUTATED | 2 | 9 | 2 | 1 |
BAP1 WILD-TYPE | 160 | 128 | 57 | 33 |
P value = 0.00593 (Fisher's exact test), Q value = 0.22
Table S546. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
BAP1 MUTATED | 0 | 8 | 3 | 3 |
BAP1 WILD-TYPE | 135 | 104 | 66 | 76 |
Figure S75. Get High-res Image Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1
Table S547. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
BAP1 MUTATED | 2 | 0 | 1 | 0 | 1 |
BAP1 WILD-TYPE | 35 | 29 | 35 | 5 | 19 |
P value = 0.469 (Fisher's exact test), Q value = 0.94
Table S548. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
BAP1 MUTATED | 2 | 0 | 1 | 1 |
BAP1 WILD-TYPE | 41 | 38 | 26 | 18 |
P value = 0.0969 (Fisher's exact test), Q value = 0.59
Table S549. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
BAP1 MUTATED | 3 | 10 | 1 |
BAP1 WILD-TYPE | 111 | 163 | 103 |
P value = 0.00568 (Fisher's exact test), Q value = 0.22
Table S550. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
BAP1 MUTATED | 8 | 5 | 1 |
BAP1 WILD-TYPE | 108 | 101 | 168 |
Figure S76. Get High-res Image Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.28
Table S551. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
BAP1 MUTATED | 0 | 6 | 8 |
BAP1 WILD-TYPE | 119 | 90 | 169 |
Figure S77. Get High-res Image Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.9
Table S552. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
BAP1 MUTATED | 2 | 5 | 5 | 2 | 0 |
BAP1 WILD-TYPE | 84 | 94 | 84 | 63 | 53 |
P value = 0.00556 (Fisher's exact test), Q value = 0.22
Table S553. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
BAP1 MUTATED | 0 | 4 | 8 | 2 |
BAP1 WILD-TYPE | 93 | 39 | 119 | 117 |
Figure S78. Get High-res Image Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.22
Table S554. Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
BAP1 MUTATED | 0 | 4 | 6 | 2 | 2 | 0 |
BAP1 WILD-TYPE | 74 | 43 | 82 | 63 | 25 | 81 |
Figure S79. Get High-res Image Gene #57: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.98
Table S555. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RIPK4 MUTATED | 6 | 8 | 1 | 2 |
RIPK4 WILD-TYPE | 156 | 129 | 58 | 32 |
P value = 0.0747 (Fisher's exact test), Q value = 0.57
Table S556. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RIPK4 MUTATED | 2 | 9 | 2 | 4 |
RIPK4 WILD-TYPE | 133 | 103 | 67 | 75 |
P value = 1 (Fisher's exact test), Q value = 1
Table S557. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RIPK4 MUTATED | 2 | 1 | 1 | 0 | 1 |
RIPK4 WILD-TYPE | 35 | 28 | 35 | 5 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
Table S558. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RIPK4 MUTATED | 2 | 1 | 1 | 1 |
RIPK4 WILD-TYPE | 41 | 37 | 26 | 18 |
P value = 0.0505 (Fisher's exact test), Q value = 0.51
Table S559. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RIPK4 MUTATED | 4 | 12 | 1 |
RIPK4 WILD-TYPE | 110 | 161 | 103 |
P value = 0.015 (Fisher's exact test), Q value = 0.32
Table S560. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RIPK4 MUTATED | 7 | 8 | 2 |
RIPK4 WILD-TYPE | 109 | 98 | 167 |
Figure S80. Get High-res Image Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1
Table S561. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RIPK4 MUTATED | 4 | 5 | 8 |
RIPK4 WILD-TYPE | 115 | 91 | 169 |
P value = 0.779 (Fisher's exact test), Q value = 1
Table S562. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RIPK4 MUTATED | 2 | 4 | 4 | 4 | 3 |
RIPK4 WILD-TYPE | 84 | 95 | 85 | 61 | 50 |
P value = 0.271 (Fisher's exact test), Q value = 0.81
Table S563. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RIPK4 MUTATED | 1 | 2 | 7 | 7 |
RIPK4 WILD-TYPE | 92 | 41 | 120 | 112 |
P value = 0.117 (Fisher's exact test), Q value = 0.65
Table S564. Gene #58: 'RIPK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RIPK4 MUTATED | 5 | 1 | 6 | 4 | 1 | 0 |
RIPK4 WILD-TYPE | 69 | 46 | 82 | 61 | 26 | 81 |
P value = 0.477 (Fisher's exact test), Q value = 0.95
Table S565. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TMCO4 MUTATED | 4 | 7 | 1 | 0 |
TMCO4 WILD-TYPE | 158 | 130 | 58 | 34 |
P value = 0.0367 (Fisher's exact test), Q value = 0.45
Table S566. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TMCO4 MUTATED | 1 | 5 | 5 | 1 |
TMCO4 WILD-TYPE | 134 | 107 | 64 | 78 |
Figure S81. Get High-res Image Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.91
Table S567. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TMCO4 MUTATED | 2 | 8 | 2 |
TMCO4 WILD-TYPE | 112 | 165 | 102 |
P value = 0.073 (Fisher's exact test), Q value = 0.57
Table S568. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TMCO4 MUTATED | 2 | 7 | 3 |
TMCO4 WILD-TYPE | 114 | 99 | 166 |
P value = 0.393 (Fisher's exact test), Q value = 0.9
Table S569. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TMCO4 MUTATED | 2 | 2 | 8 |
TMCO4 WILD-TYPE | 117 | 94 | 169 |
P value = 0.301 (Fisher's exact test), Q value = 0.84
Table S570. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TMCO4 MUTATED | 1 | 2 | 6 | 2 | 1 |
TMCO4 WILD-TYPE | 85 | 97 | 83 | 63 | 52 |
P value = 0.0763 (Fisher's exact test), Q value = 0.57
Table S571. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TMCO4 MUTATED | 1 | 0 | 8 | 2 |
TMCO4 WILD-TYPE | 92 | 43 | 119 | 117 |
P value = 0.0856 (Fisher's exact test), Q value = 0.57
Table S572. Gene #59: 'TMCO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TMCO4 MUTATED | 1 | 0 | 6 | 1 | 2 | 1 |
TMCO4 WILD-TYPE | 73 | 47 | 82 | 64 | 25 | 80 |
P value = 0.574 (Fisher's exact test), Q value = 0.98
Table S573. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CDH1 MUTATED | 5 | 4 | 3 | 2 |
CDH1 WILD-TYPE | 157 | 133 | 56 | 32 |
P value = 0.731 (Fisher's exact test), Q value = 1
Table S574. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CDH1 MUTATED | 4 | 4 | 4 | 2 |
CDH1 WILD-TYPE | 131 | 108 | 65 | 77 |
P value = 1 (Fisher's exact test), Q value = 1
Table S575. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CDH1 MUTATED | 2 | 1 | 1 | 0 | 1 |
CDH1 WILD-TYPE | 35 | 28 | 35 | 5 | 19 |
P value = 0.753 (Fisher's exact test), Q value = 1
Table S576. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CDH1 MUTATED | 2 | 2 | 0 | 1 |
CDH1 WILD-TYPE | 41 | 36 | 27 | 18 |
P value = 0.94 (Fisher's exact test), Q value = 1
Table S577. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CDH1 MUTATED | 4 | 7 | 3 |
CDH1 WILD-TYPE | 110 | 166 | 101 |
P value = 0.401 (Fisher's exact test), Q value = 0.9
Table S578. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CDH1 MUTATED | 2 | 5 | 7 |
CDH1 WILD-TYPE | 114 | 101 | 162 |
P value = 0.264 (Fisher's exact test), Q value = 0.81
Table S579. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CDH1 MUTATED | 6 | 1 | 7 |
CDH1 WILD-TYPE | 113 | 95 | 170 |
P value = 0.0595 (Fisher's exact test), Q value = 0.53
Table S580. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CDH1 MUTATED | 5 | 1 | 6 | 0 | 2 |
CDH1 WILD-TYPE | 81 | 98 | 83 | 65 | 51 |
P value = 0.603 (Fisher's exact test), Q value = 0.99
Table S581. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CDH1 MUTATED | 4 | 0 | 6 | 4 |
CDH1 WILD-TYPE | 89 | 43 | 121 | 115 |
P value = 0.326 (Fisher's exact test), Q value = 0.85
Table S582. Gene #60: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CDH1 MUTATED | 2 | 0 | 4 | 1 | 1 | 6 |
CDH1 WILD-TYPE | 72 | 47 | 84 | 64 | 26 | 75 |
P value = 0.34 (Fisher's exact test), Q value = 0.86
Table S583. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NRAS MUTATED | 2 | 5 | 0 | 0 |
NRAS WILD-TYPE | 160 | 132 | 59 | 34 |
P value = 0.47 (Fisher's exact test), Q value = 0.94
Table S584. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NRAS MUTATED | 2 | 3 | 2 | 0 |
NRAS WILD-TYPE | 133 | 109 | 67 | 79 |
P value = 0.797 (Fisher's exact test), Q value = 1
Table S585. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NRAS MUTATED | 1 | 4 | 2 |
NRAS WILD-TYPE | 113 | 169 | 102 |
P value = 0.64 (Fisher's exact test), Q value = 1
Table S586. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NRAS MUTATED | 3 | 2 | 2 |
NRAS WILD-TYPE | 113 | 104 | 167 |
P value = 0.13 (Fisher's exact test), Q value = 0.68
Table S587. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NRAS MUTATED | 0 | 3 | 4 |
NRAS WILD-TYPE | 119 | 93 | 173 |
P value = 0.464 (Fisher's exact test), Q value = 0.94
Table S588. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NRAS MUTATED | 1 | 3 | 3 | 0 | 0 |
NRAS WILD-TYPE | 85 | 96 | 86 | 65 | 53 |
P value = 0.0288 (Fisher's exact test), Q value = 0.44
Table S589. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NRAS MUTATED | 2 | 3 | 2 | 0 |
NRAS WILD-TYPE | 91 | 40 | 125 | 119 |
Figure S82. Get High-res Image Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.57
Table S590. Gene #61: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NRAS MUTATED | 0 | 3 | 2 | 0 | 1 | 1 |
NRAS WILD-TYPE | 74 | 44 | 86 | 65 | 26 | 80 |
P value = 0.00998 (Fisher's exact test), Q value = 0.27
Table S591. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ARID1B MUTATED | 7 | 15 | 0 | 1 |
ARID1B WILD-TYPE | 155 | 122 | 59 | 33 |
Figure S83. Get High-res Image Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.77
Table S592. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ARID1B MUTATED | 5 | 10 | 2 | 6 |
ARID1B WILD-TYPE | 130 | 102 | 67 | 73 |
P value = 0.925 (Fisher's exact test), Q value = 1
Table S593. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ARID1B MUTATED | 2 | 1 | 1 | 0 | 0 |
ARID1B WILD-TYPE | 35 | 28 | 35 | 5 | 20 |
P value = 0.514 (Fisher's exact test), Q value = 0.98
Table S594. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ARID1B MUTATED | 3 | 1 | 0 | 0 |
ARID1B WILD-TYPE | 40 | 37 | 27 | 19 |
P value = 0.0856 (Fisher's exact test), Q value = 0.57
Table S595. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ARID1B MUTATED | 7 | 14 | 2 |
ARID1B WILD-TYPE | 107 | 159 | 102 |
P value = 0.0569 (Fisher's exact test), Q value = 0.52
Table S596. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ARID1B MUTATED | 12 | 5 | 6 |
ARID1B WILD-TYPE | 104 | 101 | 163 |
P value = 0.0838 (Fisher's exact test), Q value = 0.57
Table S597. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ARID1B MUTATED | 4 | 10 | 9 |
ARID1B WILD-TYPE | 115 | 86 | 168 |
P value = 0.0585 (Fisher's exact test), Q value = 0.53
Table S598. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ARID1B MUTATED | 1 | 9 | 6 | 6 | 1 |
ARID1B WILD-TYPE | 85 | 90 | 83 | 59 | 52 |
P value = 0.391 (Fisher's exact test), Q value = 0.89
Table S599. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ARID1B MUTATED | 4 | 5 | 7 | 6 |
ARID1B WILD-TYPE | 89 | 38 | 120 | 113 |
P value = 0.2 (Fisher's exact test), Q value = 0.76
Table S600. Gene #62: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ARID1B MUTATED | 3 | 5 | 8 | 4 | 0 | 2 |
ARID1B WILD-TYPE | 71 | 42 | 80 | 61 | 27 | 79 |
P value = 0.554 (Fisher's exact test), Q value = 0.98
Table S601. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZNF511 MUTATED | 4 | 5 | 0 | 1 |
ZNF511 WILD-TYPE | 158 | 132 | 59 | 33 |
P value = 0.342 (Fisher's exact test), Q value = 0.86
Table S602. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZNF511 MUTATED | 4 | 3 | 3 | 0 |
ZNF511 WILD-TYPE | 131 | 109 | 66 | 79 |
P value = 1 (Fisher's exact test), Q value = 1
Table S603. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZNF511 MUTATED | 3 | 4 | 2 |
ZNF511 WILD-TYPE | 111 | 169 | 102 |
P value = 1 (Fisher's exact test), Q value = 1
Table S604. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZNF511 MUTATED | 3 | 2 | 4 |
ZNF511 WILD-TYPE | 113 | 104 | 165 |
P value = 0.759 (Fisher's exact test), Q value = 1
Table S605. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZNF511 MUTATED | 3 | 1 | 5 |
ZNF511 WILD-TYPE | 116 | 95 | 172 |
P value = 0.148 (Fisher's exact test), Q value = 0.71
Table S606. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZNF511 MUTATED | 4 | 1 | 0 | 2 | 2 |
ZNF511 WILD-TYPE | 82 | 98 | 89 | 63 | 51 |
P value = 0.561 (Fisher's exact test), Q value = 0.98
Table S607. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZNF511 MUTATED | 4 | 1 | 2 | 2 |
ZNF511 WILD-TYPE | 89 | 42 | 125 | 117 |
P value = 0.467 (Fisher's exact test), Q value = 0.94
Table S608. Gene #63: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZNF511 MUTATED | 3 | 1 | 1 | 0 | 1 | 3 |
ZNF511 WILD-TYPE | 71 | 46 | 87 | 65 | 26 | 78 |
P value = 0.543 (Fisher's exact test), Q value = 0.98
Table S609. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TFG MUTATED | 3 | 6 | 1 | 0 |
TFG WILD-TYPE | 159 | 131 | 58 | 34 |
P value = 0.086 (Fisher's exact test), Q value = 0.57
Table S610. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TFG MUTATED | 1 | 5 | 4 | 1 |
TFG WILD-TYPE | 134 | 107 | 65 | 78 |
P value = 0.372 (Fisher's exact test), Q value = 0.89
Table S611. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
TFG MUTATED | 1 | 0 | 1 | 0 | 2 |
TFG WILD-TYPE | 36 | 29 | 35 | 5 | 18 |
P value = 0.0915 (Fisher's exact test), Q value = 0.58
Table S612. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
TFG MUTATED | 2 | 0 | 0 | 2 |
TFG WILD-TYPE | 41 | 38 | 27 | 17 |
P value = 0.00546 (Fisher's exact test), Q value = 0.22
Table S613. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TFG MUTATED | 0 | 10 | 1 |
TFG WILD-TYPE | 114 | 163 | 103 |
Figure S84. Get High-res Image Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.59
Table S614. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TFG MUTATED | 3 | 6 | 2 |
TFG WILD-TYPE | 113 | 100 | 167 |
P value = 0.178 (Fisher's exact test), Q value = 0.74
Table S615. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TFG MUTATED | 1 | 2 | 8 |
TFG WILD-TYPE | 118 | 94 | 169 |
P value = 0.21 (Fisher's exact test), Q value = 0.77
Table S616. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TFG MUTATED | 1 | 2 | 4 | 4 | 0 |
TFG WILD-TYPE | 85 | 97 | 85 | 61 | 53 |
P value = 0.0754 (Fisher's exact test), Q value = 0.57
Table S617. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TFG MUTATED | 1 | 0 | 8 | 2 |
TFG WILD-TYPE | 92 | 43 | 119 | 117 |
P value = 0.00176 (Fisher's exact test), Q value = 0.1
Table S618. Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TFG MUTATED | 1 | 0 | 9 | 1 | 0 | 0 |
TFG WILD-TYPE | 73 | 47 | 79 | 64 | 27 | 81 |
Figure S85. Get High-res Image Gene #64: 'TFG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.84
Table S619. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FUS MUTATED | 3 | 2 | 2 | 2 |
FUS WILD-TYPE | 159 | 135 | 57 | 32 |
P value = 0.799 (Fisher's exact test), Q value = 1
Table S620. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FUS MUTATED | 3 | 2 | 1 | 3 |
FUS WILD-TYPE | 132 | 110 | 68 | 76 |
P value = 0.148 (Fisher's exact test), Q value = 0.71
Table S621. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
FUS MUTATED | 1 | 0 | 2 | 1 | 0 |
FUS WILD-TYPE | 36 | 29 | 34 | 4 | 20 |
P value = 1 (Fisher's exact test), Q value = 1
Table S622. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
FUS MUTATED | 2 | 1 | 1 | 0 |
FUS WILD-TYPE | 41 | 37 | 26 | 19 |
P value = 0.755 (Fisher's exact test), Q value = 1
Table S623. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FUS MUTATED | 3 | 3 | 3 |
FUS WILD-TYPE | 111 | 170 | 101 |
P value = 0.359 (Fisher's exact test), Q value = 0.88
Table S624. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FUS MUTATED | 1 | 2 | 6 |
FUS WILD-TYPE | 115 | 104 | 163 |
P value = 0.692 (Fisher's exact test), Q value = 1
Table S625. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FUS MUTATED | 3 | 3 | 3 |
FUS WILD-TYPE | 116 | 93 | 174 |
P value = 0.345 (Fisher's exact test), Q value = 0.86
Table S626. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FUS MUTATED | 1 | 2 | 1 | 4 | 1 |
FUS WILD-TYPE | 85 | 97 | 88 | 61 | 52 |
P value = 0.959 (Fisher's exact test), Q value = 1
Table S627. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FUS MUTATED | 2 | 1 | 2 | 3 |
FUS WILD-TYPE | 91 | 42 | 125 | 116 |
P value = 0.991 (Fisher's exact test), Q value = 1
Table S628. Gene #65: 'FUS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FUS MUTATED | 1 | 1 | 2 | 2 | 0 | 2 |
FUS WILD-TYPE | 73 | 46 | 86 | 63 | 27 | 79 |
P value = 0.135 (Fisher's exact test), Q value = 0.7
Table S629. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ASXL1 MUTATED | 6 | 11 | 5 | 0 |
ASXL1 WILD-TYPE | 156 | 126 | 54 | 34 |
P value = 0.0376 (Fisher's exact test), Q value = 0.45
Table S630. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ASXL1 MUTATED | 7 | 12 | 1 | 2 |
ASXL1 WILD-TYPE | 128 | 100 | 68 | 77 |
Figure S86. Get High-res Image Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1
Table S631. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ASXL1 MUTATED | 4 | 1 | 2 | 0 | 2 |
ASXL1 WILD-TYPE | 33 | 28 | 34 | 5 | 18 |
P value = 0.289 (Fisher's exact test), Q value = 0.83
Table S632. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ASXL1 MUTATED | 5 | 3 | 0 | 1 |
ASXL1 WILD-TYPE | 38 | 35 | 27 | 18 |
P value = 0.642 (Fisher's exact test), Q value = 1
Table S633. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ASXL1 MUTATED | 5 | 12 | 5 |
ASXL1 WILD-TYPE | 109 | 161 | 99 |
P value = 0.379 (Fisher's exact test), Q value = 0.89
Table S634. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ASXL1 MUTATED | 5 | 9 | 8 |
ASXL1 WILD-TYPE | 111 | 97 | 161 |
P value = 0.0503 (Fisher's exact test), Q value = 0.51
Table S635. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ASXL1 MUTATED | 2 | 8 | 12 |
ASXL1 WILD-TYPE | 117 | 88 | 165 |
P value = 0.302 (Fisher's exact test), Q value = 0.84
Table S636. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ASXL1 MUTATED | 4 | 8 | 3 | 6 | 1 |
ASXL1 WILD-TYPE | 82 | 91 | 86 | 59 | 52 |
P value = 0.453 (Fisher's exact test), Q value = 0.94
Table S637. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ASXL1 MUTATED | 5 | 3 | 10 | 4 |
ASXL1 WILD-TYPE | 88 | 40 | 117 | 115 |
P value = 0.161 (Fisher's exact test), Q value = 0.71
Table S638. Gene #66: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ASXL1 MUTATED | 1 | 3 | 10 | 3 | 1 | 4 |
ASXL1 WILD-TYPE | 73 | 44 | 78 | 62 | 26 | 77 |
P value = 0.1 (Fisher's exact test), Q value = 0.6
Table S639. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CNOT3 MUTATED | 5 | 1 | 3 | 2 |
CNOT3 WILD-TYPE | 157 | 136 | 56 | 32 |
P value = 0.625 (Fisher's exact test), Q value = 1
Table S640. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CNOT3 MUTATED | 6 | 2 | 1 | 2 |
CNOT3 WILD-TYPE | 129 | 110 | 68 | 77 |
P value = 0.118 (Fisher's exact test), Q value = 0.65
Table S641. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CNOT3 MUTATED | 2 | 2 | 0 | 1 | 0 |
CNOT3 WILD-TYPE | 35 | 27 | 36 | 4 | 20 |
P value = 0.803 (Fisher's exact test), Q value = 1
Table S642. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CNOT3 MUTATED | 3 | 1 | 1 | 0 |
CNOT3 WILD-TYPE | 40 | 37 | 26 | 19 |
P value = 0.0911 (Fisher's exact test), Q value = 0.58
Table S643. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CNOT3 MUTATED | 3 | 2 | 6 |
CNOT3 WILD-TYPE | 111 | 171 | 98 |
P value = 0.0895 (Fisher's exact test), Q value = 0.58
Table S644. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CNOT3 MUTATED | 4 | 0 | 7 |
CNOT3 WILD-TYPE | 112 | 106 | 162 |
P value = 1 (Fisher's exact test), Q value = 1
Table S645. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CNOT3 MUTATED | 3 | 3 | 5 |
CNOT3 WILD-TYPE | 116 | 93 | 172 |
P value = 0.0674 (Fisher's exact test), Q value = 0.56
Table S646. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CNOT3 MUTATED | 3 | 6 | 0 | 2 | 0 |
CNOT3 WILD-TYPE | 83 | 93 | 89 | 63 | 53 |
P value = 0.00969 (Fisher's exact test), Q value = 0.27
Table S647. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CNOT3 MUTATED | 6 | 3 | 1 | 1 |
CNOT3 WILD-TYPE | 87 | 40 | 126 | 118 |
Figure S87. Get High-res Image Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.31
Table S648. Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CNOT3 MUTATED | 0 | 2 | 0 | 3 | 0 | 6 |
CNOT3 WILD-TYPE | 74 | 45 | 88 | 62 | 27 | 75 |
Figure S88. Get High-res Image Gene #67: 'CNOT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.89
Table S649. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ARID2 MUTATED | 9 | 13 | 6 | 1 |
ARID2 WILD-TYPE | 153 | 124 | 53 | 33 |
P value = 0.399 (Fisher's exact test), Q value = 0.9
Table S650. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ARID2 MUTATED | 7 | 12 | 4 | 6 |
ARID2 WILD-TYPE | 128 | 100 | 65 | 73 |
P value = 0.494 (Fisher's exact test), Q value = 0.96
Table S651. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ARID2 MUTATED | 2 | 3 | 5 | 1 | 1 |
ARID2 WILD-TYPE | 35 | 26 | 31 | 4 | 19 |
P value = 0.263 (Fisher's exact test), Q value = 0.81
Table S652. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ARID2 MUTATED | 3 | 6 | 3 | 0 |
ARID2 WILD-TYPE | 40 | 32 | 24 | 19 |
P value = 0.248 (Fisher's exact test), Q value = 0.79
Table S653. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ARID2 MUTATED | 9 | 16 | 4 |
ARID2 WILD-TYPE | 105 | 157 | 100 |
P value = 0.189 (Fisher's exact test), Q value = 0.74
Table S654. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ARID2 MUTATED | 11 | 10 | 8 |
ARID2 WILD-TYPE | 105 | 96 | 161 |
P value = 0.0126 (Fisher's exact test), Q value = 0.29
Table S655. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ARID2 MUTATED | 11 | 12 | 6 |
ARID2 WILD-TYPE | 108 | 84 | 171 |
Figure S89. Get High-res Image Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.84
Table S656. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ARID2 MUTATED | 3 | 8 | 7 | 4 | 7 |
ARID2 WILD-TYPE | 83 | 91 | 82 | 61 | 46 |
P value = 0.0195 (Fisher's exact test), Q value = 0.35
Table S657. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ARID2 MUTATED | 3 | 4 | 6 | 16 |
ARID2 WILD-TYPE | 90 | 39 | 121 | 103 |
Figure S90. Get High-res Image Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.71
Table S658. Gene #68: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ARID2 MUTATED | 10 | 4 | 6 | 6 | 0 | 3 |
ARID2 WILD-TYPE | 64 | 43 | 82 | 59 | 27 | 78 |
P value = 0.59 (Fisher's exact test), Q value = 0.99
Table S659. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZNF773 MUTATED | 2 | 3 | 2 | 0 |
ZNF773 WILD-TYPE | 160 | 134 | 57 | 34 |
P value = 0.592 (Fisher's exact test), Q value = 0.99
Table S660. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZNF773 MUTATED | 3 | 3 | 1 | 0 |
ZNF773 WILD-TYPE | 132 | 109 | 68 | 79 |
P value = 0.435 (Fisher's exact test), Q value = 0.92
Table S661. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZNF773 MUTATED | 2 | 4 | 0 |
ZNF773 WILD-TYPE | 112 | 169 | 104 |
P value = 0.501 (Fisher's exact test), Q value = 0.97
Table S662. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZNF773 MUTATED | 1 | 3 | 2 |
ZNF773 WILD-TYPE | 115 | 103 | 167 |
P value = 0.702 (Fisher's exact test), Q value = 1
Table S663. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZNF773 MUTATED | 1 | 2 | 4 |
ZNF773 WILD-TYPE | 118 | 94 | 173 |
P value = 0.634 (Fisher's exact test), Q value = 1
Table S664. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZNF773 MUTATED | 2 | 3 | 2 | 0 | 0 |
ZNF773 WILD-TYPE | 84 | 96 | 87 | 65 | 53 |
P value = 0.189 (Fisher's exact test), Q value = 0.74
Table S665. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZNF773 MUTATED | 3 | 1 | 3 | 0 |
ZNF773 WILD-TYPE | 90 | 42 | 124 | 119 |
P value = 0.324 (Fisher's exact test), Q value = 0.85
Table S666. Gene #69: 'ZNF773 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZNF773 MUTATED | 0 | 1 | 3 | 0 | 0 | 3 |
ZNF773 WILD-TYPE | 74 | 46 | 85 | 65 | 27 | 78 |
P value = 0.741 (Fisher's exact test), Q value = 1
Table S667. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
DAZAP1 MUTATED | 2 | 2 | 1 | 1 |
DAZAP1 WILD-TYPE | 160 | 135 | 58 | 33 |
P value = 0.045 (Fisher's exact test), Q value = 0.49
Table S668. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
DAZAP1 MUTATED | 1 | 5 | 0 | 0 |
DAZAP1 WILD-TYPE | 134 | 107 | 69 | 79 |
Figure S91. Get High-res Image Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.74
Table S669. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
DAZAP1 MUTATED | 1 | 5 | 0 |
DAZAP1 WILD-TYPE | 113 | 168 | 104 |
P value = 0.0104 (Fisher's exact test), Q value = 0.27
Table S670. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
DAZAP1 MUTATED | 0 | 5 | 1 |
DAZAP1 WILD-TYPE | 116 | 101 | 168 |
Figure S92. Get High-res Image Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.77
Table S671. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
DAZAP1 MUTATED | 1 | 0 | 5 |
DAZAP1 WILD-TYPE | 118 | 96 | 172 |
P value = 0.024 (Fisher's exact test), Q value = 0.4
Table S672. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
DAZAP1 MUTATED | 0 | 0 | 3 | 3 | 0 |
DAZAP1 WILD-TYPE | 86 | 99 | 86 | 62 | 53 |
Figure S93. Get High-res Image Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.86
Table S673. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
DAZAP1 MUTATED | 1 | 0 | 3 | 0 |
DAZAP1 WILD-TYPE | 92 | 43 | 124 | 119 |
P value = 0.428 (Fisher's exact test), Q value = 0.92
Table S674. Gene #70: 'DAZAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
DAZAP1 MUTATED | 0 | 0 | 3 | 0 | 0 | 1 |
DAZAP1 WILD-TYPE | 74 | 47 | 85 | 65 | 27 | 80 |
P value = 0.855 (Fisher's exact test), Q value = 1
Table S675. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ADC MUTATED | 3 | 3 | 0 | 0 |
ADC WILD-TYPE | 159 | 134 | 59 | 34 |
P value = 0.638 (Fisher's exact test), Q value = 1
Table S676. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ADC MUTATED | 2 | 3 | 0 | 1 |
ADC WILD-TYPE | 133 | 109 | 69 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
Table S677. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ADC MUTATED | 2 | 3 | 1 |
ADC WILD-TYPE | 112 | 170 | 103 |
P value = 0.582 (Fisher's exact test), Q value = 0.99
Table S678. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ADC MUTATED | 3 | 1 | 2 |
ADC WILD-TYPE | 113 | 105 | 167 |
P value = 0.773 (Fisher's exact test), Q value = 1
Table S679. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ADC MUTATED | 1 | 2 | 3 |
ADC WILD-TYPE | 118 | 94 | 174 |
P value = 0.309 (Fisher's exact test), Q value = 0.84
Table S680. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ADC MUTATED | 0 | 3 | 1 | 2 | 0 |
ADC WILD-TYPE | 86 | 96 | 88 | 63 | 53 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S681. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ADC MUTATED | 1 | 1 | 2 | 2 |
ADC WILD-TYPE | 92 | 42 | 125 | 117 |
P value = 0.707 (Fisher's exact test), Q value = 1
Table S682. Gene #71: 'ADC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ADC MUTATED | 1 | 1 | 2 | 2 | 0 | 0 |
ADC WILD-TYPE | 73 | 46 | 86 | 63 | 27 | 81 |
P value = 1 (Fisher's exact test), Q value = 1
Table S683. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
FUT5 MUTATED | 2 | 1 | 0 | 0 |
FUT5 WILD-TYPE | 160 | 136 | 59 | 34 |
P value = 0.394 (Fisher's exact test), Q value = 0.9
Table S684. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
FUT5 MUTATED | 0 | 1 | 1 | 1 |
FUT5 WILD-TYPE | 135 | 111 | 68 | 78 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S685. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
FUT5 MUTATED | 1 | 2 | 0 |
FUT5 WILD-TYPE | 113 | 171 | 104 |
P value = 0.111 (Fisher's exact test), Q value = 0.62
Table S686. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
FUT5 MUTATED | 1 | 2 | 0 |
FUT5 WILD-TYPE | 115 | 104 | 169 |
P value = 0.797 (Fisher's exact test), Q value = 1
Table S687. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
FUT5 MUTATED | 1 | 0 | 2 |
FUT5 WILD-TYPE | 118 | 96 | 175 |
P value = 0.337 (Fisher's exact test), Q value = 0.86
Table S688. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
FUT5 MUTATED | 0 | 0 | 1 | 1 | 1 |
FUT5 WILD-TYPE | 86 | 99 | 88 | 64 | 52 |
P value = 0.847 (Fisher's exact test), Q value = 1
Table S689. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
FUT5 MUTATED | 0 | 0 | 2 | 1 |
FUT5 WILD-TYPE | 93 | 43 | 125 | 118 |
P value = 0.273 (Fisher's exact test), Q value = 0.81
Table S690. Gene #72: 'FUT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
FUT5 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 |
FUT5 WILD-TYPE | 74 | 47 | 87 | 64 | 26 | 81 |
P value = 0.545 (Fisher's exact test), Q value = 0.98
Table S691. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
AHR MUTATED | 9 | 9 | 4 | 0 |
AHR WILD-TYPE | 153 | 128 | 55 | 34 |
P value = 0.0533 (Fisher's exact test), Q value = 0.52
Table S692. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
AHR MUTATED | 3 | 7 | 8 | 4 |
AHR WILD-TYPE | 132 | 105 | 61 | 75 |
P value = 0.543 (Fisher's exact test), Q value = 0.98
Table S693. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
AHR MUTATED | 1 | 3 | 2 | 0 | 0 |
AHR WILD-TYPE | 36 | 26 | 34 | 5 | 20 |
P value = 0.211 (Fisher's exact test), Q value = 0.77
Table S694. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
AHR MUTATED | 1 | 4 | 0 | 1 |
AHR WILD-TYPE | 42 | 34 | 27 | 18 |
P value = 0.0644 (Fisher's exact test), Q value = 0.55
Table S695. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
AHR MUTATED | 3 | 15 | 4 |
AHR WILD-TYPE | 111 | 158 | 100 |
P value = 0.0755 (Fisher's exact test), Q value = 0.57
Table S696. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
AHR MUTATED | 7 | 10 | 5 |
AHR WILD-TYPE | 109 | 96 | 164 |
P value = 0.666 (Fisher's exact test), Q value = 1
Table S697. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
AHR MUTATED | 5 | 5 | 12 |
AHR WILD-TYPE | 114 | 91 | 165 |
P value = 0.313 (Fisher's exact test), Q value = 0.84
Table S698. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
AHR MUTATED | 2 | 4 | 8 | 5 | 3 |
AHR WILD-TYPE | 84 | 95 | 81 | 60 | 50 |
P value = 0.531 (Fisher's exact test), Q value = 0.98
Table S699. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
AHR MUTATED | 3 | 2 | 10 | 6 |
AHR WILD-TYPE | 90 | 41 | 117 | 113 |
P value = 0.511 (Fisher's exact test), Q value = 0.98
Table S700. Gene #73: 'AHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
AHR MUTATED | 3 | 4 | 7 | 3 | 2 | 2 |
AHR WILD-TYPE | 71 | 43 | 81 | 62 | 25 | 79 |
P value = 0.564 (Fisher's exact test), Q value = 0.98
Table S701. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
THRAP3 MUTATED | 4 | 6 | 2 | 2 |
THRAP3 WILD-TYPE | 158 | 131 | 57 | 32 |
P value = 0.336 (Fisher's exact test), Q value = 0.86
Table S702. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
THRAP3 MUTATED | 3 | 5 | 1 | 5 |
THRAP3 WILD-TYPE | 132 | 107 | 68 | 74 |
P value = 0.0723 (Fisher's exact test), Q value = 0.57
Table S703. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
THRAP3 MUTATED | 0 | 1 | 3 | 1 | 0 |
THRAP3 WILD-TYPE | 37 | 28 | 33 | 4 | 20 |
P value = 0.931 (Fisher's exact test), Q value = 1
Table S704. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
THRAP3 MUTATED | 2 | 2 | 1 | 0 |
THRAP3 WILD-TYPE | 41 | 36 | 26 | 19 |
P value = 0.836 (Fisher's exact test), Q value = 1
Table S705. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
THRAP3 MUTATED | 3 | 7 | 4 |
THRAP3 WILD-TYPE | 111 | 166 | 100 |
P value = 0.785 (Fisher's exact test), Q value = 1
Table S706. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
THRAP3 MUTATED | 5 | 4 | 5 |
THRAP3 WILD-TYPE | 111 | 102 | 164 |
P value = 1 (Fisher's exact test), Q value = 1
Table S707. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
THRAP3 MUTATED | 4 | 3 | 7 |
THRAP3 WILD-TYPE | 115 | 93 | 170 |
P value = 0.794 (Fisher's exact test), Q value = 1
Table S708. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
THRAP3 MUTATED | 2 | 5 | 2 | 3 | 2 |
THRAP3 WILD-TYPE | 84 | 94 | 87 | 62 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
Table S709. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
THRAP3 MUTATED | 3 | 1 | 5 | 5 |
THRAP3 WILD-TYPE | 90 | 42 | 122 | 114 |
P value = 0.902 (Fisher's exact test), Q value = 1
Table S710. Gene #74: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
THRAP3 MUTATED | 3 | 1 | 4 | 1 | 1 | 4 |
THRAP3 WILD-TYPE | 71 | 46 | 84 | 64 | 26 | 77 |
P value = 0.742 (Fisher's exact test), Q value = 1
Table S711. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TFPI2 MUTATED | 2 | 2 | 1 | 1 |
TFPI2 WILD-TYPE | 160 | 135 | 58 | 33 |
P value = 0.85 (Fisher's exact test), Q value = 1
Table S712. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TFPI2 MUTATED | 3 | 2 | 0 | 1 |
TFPI2 WILD-TYPE | 132 | 110 | 69 | 78 |
P value = 0.773 (Fisher's exact test), Q value = 1
Table S713. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TFPI2 MUTATED | 2 | 2 | 2 |
TFPI2 WILD-TYPE | 112 | 171 | 102 |
P value = 0.775 (Fisher's exact test), Q value = 1
Table S714. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TFPI2 MUTATED | 1 | 2 | 3 |
TFPI2 WILD-TYPE | 115 | 104 | 166 |
P value = 0.67 (Fisher's exact test), Q value = 1
Table S715. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TFPI2 MUTATED | 1 | 1 | 4 |
TFPI2 WILD-TYPE | 118 | 95 | 173 |
P value = 0.232 (Fisher's exact test), Q value = 0.79
Table S716. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TFPI2 MUTATED | 3 | 1 | 0 | 2 | 0 |
TFPI2 WILD-TYPE | 83 | 98 | 89 | 63 | 53 |
P value = 0.202 (Fisher's exact test), Q value = 0.76
Table S717. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TFPI2 MUTATED | 4 | 0 | 1 | 1 |
TFPI2 WILD-TYPE | 89 | 43 | 126 | 118 |
P value = 0.546 (Fisher's exact test), Q value = 0.98
Table S718. Gene #75: 'TFPI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TFPI2 MUTATED | 0 | 0 | 2 | 1 | 0 | 3 |
TFPI2 WILD-TYPE | 74 | 47 | 86 | 64 | 27 | 78 |
P value = 0.249 (Fisher's exact test), Q value = 0.79
Table S719. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NPAS4 MUTATED | 3 | 7 | 1 | 2 |
NPAS4 WILD-TYPE | 159 | 130 | 58 | 32 |
P value = 0.824 (Fisher's exact test), Q value = 1
Table S720. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NPAS4 MUTATED | 3 | 4 | 3 | 3 |
NPAS4 WILD-TYPE | 132 | 108 | 66 | 76 |
P value = 0.803 (Fisher's exact test), Q value = 1
Table S721. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
NPAS4 MUTATED | 2 | 2 | 1 | 0 | 0 |
NPAS4 WILD-TYPE | 35 | 27 | 35 | 5 | 20 |
P value = 0.865 (Fisher's exact test), Q value = 1
Table S722. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
NPAS4 MUTATED | 1 | 2 | 1 | 1 |
NPAS4 WILD-TYPE | 42 | 36 | 26 | 18 |
P value = 0.823 (Fisher's exact test), Q value = 1
Table S723. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NPAS4 MUTATED | 3 | 7 | 3 |
NPAS4 WILD-TYPE | 111 | 166 | 101 |
P value = 0.594 (Fisher's exact test), Q value = 0.99
Table S724. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NPAS4 MUTATED | 5 | 4 | 4 |
NPAS4 WILD-TYPE | 111 | 102 | 165 |
P value = 0.549 (Fisher's exact test), Q value = 0.98
Table S725. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NPAS4 MUTATED | 3 | 5 | 5 |
NPAS4 WILD-TYPE | 116 | 91 | 172 |
P value = 0.242 (Fisher's exact test), Q value = 0.79
Table S726. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NPAS4 MUTATED | 1 | 5 | 1 | 4 | 2 |
NPAS4 WILD-TYPE | 85 | 94 | 88 | 61 | 51 |
P value = 0.433 (Fisher's exact test), Q value = 0.92
Table S727. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NPAS4 MUTATED | 1 | 2 | 6 | 4 |
NPAS4 WILD-TYPE | 92 | 41 | 121 | 115 |
P value = 0.557 (Fisher's exact test), Q value = 0.98
Table S728. Gene #76: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NPAS4 MUTATED | 2 | 3 | 4 | 3 | 0 | 1 |
NPAS4 WILD-TYPE | 72 | 44 | 84 | 62 | 27 | 80 |
P value = 0.315 (Fisher's exact test), Q value = 0.84
Table S729. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NFE2L3 MUTATED | 3 | 6 | 3 | 2 |
NFE2L3 WILD-TYPE | 159 | 131 | 56 | 32 |
P value = 0.00136 (Fisher's exact test), Q value = 0.084
Table S730. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NFE2L3 MUTATED | 1 | 10 | 0 | 3 |
NFE2L3 WILD-TYPE | 134 | 102 | 69 | 76 |
Figure S94. Get High-res Image Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.62
Table S731. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
NFE2L3 MUTATED | 1 | 1 | 0 | 1 | 0 |
NFE2L3 WILD-TYPE | 36 | 28 | 36 | 4 | 20 |
P value = 0.869 (Fisher's exact test), Q value = 1
Table S732. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
NFE2L3 MUTATED | 2 | 1 | 0 | 0 |
NFE2L3 WILD-TYPE | 41 | 37 | 27 | 19 |
P value = 0.65 (Fisher's exact test), Q value = 1
Table S733. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NFE2L3 MUTATED | 3 | 8 | 3 |
NFE2L3 WILD-TYPE | 111 | 165 | 101 |
P value = 0.106 (Fisher's exact test), Q value = 0.62
Table S734. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NFE2L3 MUTATED | 4 | 7 | 3 |
NFE2L3 WILD-TYPE | 112 | 99 | 166 |
P value = 1 (Fisher's exact test), Q value = 1
Table S735. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NFE2L3 MUTATED | 4 | 3 | 7 |
NFE2L3 WILD-TYPE | 115 | 93 | 170 |
P value = 0.568 (Fisher's exact test), Q value = 0.98
Table S736. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NFE2L3 MUTATED | 1 | 4 | 3 | 4 | 2 |
NFE2L3 WILD-TYPE | 85 | 95 | 86 | 61 | 51 |
P value = 0.879 (Fisher's exact test), Q value = 1
Table S737. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NFE2L3 MUTATED | 3 | 2 | 5 | 3 |
NFE2L3 WILD-TYPE | 90 | 41 | 122 | 116 |
P value = 0.768 (Fisher's exact test), Q value = 1
Table S738. Gene #77: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NFE2L3 MUTATED | 2 | 2 | 5 | 1 | 0 | 3 |
NFE2L3 WILD-TYPE | 72 | 45 | 83 | 64 | 27 | 78 |
P value = 0.787 (Fisher's exact test), Q value = 1
Table S739. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TAF11 MUTATED | 3 | 2 | 2 | 0 |
TAF11 WILD-TYPE | 159 | 135 | 57 | 34 |
P value = 0.307 (Fisher's exact test), Q value = 0.84
Table S740. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TAF11 MUTATED | 5 | 1 | 0 | 1 |
TAF11 WILD-TYPE | 130 | 111 | 69 | 78 |
P value = 0.238 (Fisher's exact test), Q value = 0.79
Table S741. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TAF11 MUTATED | 3 | 1 | 3 |
TAF11 WILD-TYPE | 111 | 172 | 101 |
P value = 0.886 (Fisher's exact test), Q value = 1
Table S742. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TAF11 MUTATED | 2 | 1 | 4 |
TAF11 WILD-TYPE | 114 | 105 | 165 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S743. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TAF11 MUTATED | 3 | 1 | 3 |
TAF11 WILD-TYPE | 116 | 95 | 174 |
P value = 0.923 (Fisher's exact test), Q value = 1
Table S744. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TAF11 MUTATED | 1 | 3 | 1 | 1 | 1 |
TAF11 WILD-TYPE | 85 | 96 | 88 | 64 | 52 |
P value = 0.527 (Fisher's exact test), Q value = 0.98
Table S745. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TAF11 MUTATED | 3 | 1 | 1 | 2 |
TAF11 WILD-TYPE | 90 | 42 | 126 | 117 |
P value = 0.641 (Fisher's exact test), Q value = 1
Table S746. Gene #78: 'TAF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TAF11 MUTATED | 2 | 1 | 1 | 0 | 0 | 3 |
TAF11 WILD-TYPE | 72 | 46 | 87 | 65 | 27 | 78 |
P value = 0.0201 (Fisher's exact test), Q value = 0.35
Table S747. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
BCL2L1 MUTATED | 0 | 2 | 0 | 2 |
BCL2L1 WILD-TYPE | 162 | 135 | 59 | 32 |
Figure S95. Get High-res Image Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.51
Table S748. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
BCL2L1 MUTATED | 0 | 1 | 0 | 3 |
BCL2L1 WILD-TYPE | 135 | 111 | 69 | 76 |
Figure S96. Get High-res Image Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.84
Table S749. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
BCL2L1 MUTATED | 0 | 2 | 2 |
BCL2L1 WILD-TYPE | 114 | 171 | 102 |
P value = 0.694 (Fisher's exact test), Q value = 1
Table S750. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
BCL2L1 MUTATED | 1 | 2 | 1 |
BCL2L1 WILD-TYPE | 115 | 104 | 168 |
P value = 0.371 (Fisher's exact test), Q value = 0.89
Table S751. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
BCL2L1 MUTATED | 0 | 1 | 3 |
BCL2L1 WILD-TYPE | 119 | 95 | 174 |
P value = 0.404 (Fisher's exact test), Q value = 0.9
Table S752. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
BCL2L1 MUTATED | 1 | 1 | 0 | 2 | 0 |
BCL2L1 WILD-TYPE | 85 | 98 | 89 | 63 | 53 |
P value = 0.382 (Fisher's exact test), Q value = 0.89
Table S753. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
BCL2L1 MUTATED | 1 | 1 | 2 | 0 |
BCL2L1 WILD-TYPE | 92 | 42 | 125 | 119 |
P value = 0.906 (Fisher's exact test), Q value = 1
Table S754. Gene #79: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
BCL2L1 MUTATED | 0 | 1 | 1 | 1 | 0 | 1 |
BCL2L1 WILD-TYPE | 74 | 46 | 87 | 64 | 27 | 80 |
P value = 0.318 (Fisher's exact test), Q value = 0.85
Table S755. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TRERF1 MUTATED | 5 | 8 | 5 | 2 |
TRERF1 WILD-TYPE | 157 | 129 | 54 | 32 |
P value = 0.928 (Fisher's exact test), Q value = 1
Table S756. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TRERF1 MUTATED | 6 | 7 | 4 | 4 |
TRERF1 WILD-TYPE | 129 | 105 | 65 | 75 |
P value = 0.813 (Fisher's exact test), Q value = 1
Table S757. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
TRERF1 MUTATED | 4 | 1 | 4 | 0 | 2 |
TRERF1 WILD-TYPE | 33 | 28 | 32 | 5 | 18 |
P value = 0.768 (Fisher's exact test), Q value = 1
Table S758. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
TRERF1 MUTATED | 5 | 2 | 2 | 2 |
TRERF1 WILD-TYPE | 38 | 36 | 25 | 17 |
P value = 0.956 (Fisher's exact test), Q value = 1
Table S759. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TRERF1 MUTATED | 5 | 9 | 6 |
TRERF1 WILD-TYPE | 109 | 164 | 98 |
P value = 0.674 (Fisher's exact test), Q value = 1
Table S760. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TRERF1 MUTATED | 6 | 7 | 7 |
TRERF1 WILD-TYPE | 110 | 99 | 162 |
P value = 1 (Fisher's exact test), Q value = 1
Table S761. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TRERF1 MUTATED | 6 | 5 | 10 |
TRERF1 WILD-TYPE | 113 | 91 | 167 |
P value = 0.591 (Fisher's exact test), Q value = 0.99
Table S762. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TRERF1 MUTATED | 4 | 5 | 8 | 2 | 2 |
TRERF1 WILD-TYPE | 82 | 94 | 81 | 63 | 51 |
P value = 0.74 (Fisher's exact test), Q value = 1
Table S763. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TRERF1 MUTATED | 3 | 3 | 7 | 6 |
TRERF1 WILD-TYPE | 90 | 40 | 120 | 113 |
P value = 0.687 (Fisher's exact test), Q value = 1
Table S764. Gene #80: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TRERF1 MUTATED | 5 | 3 | 6 | 2 | 0 | 3 |
TRERF1 WILD-TYPE | 69 | 44 | 82 | 63 | 27 | 78 |
P value = 0.118 (Fisher's exact test), Q value = 0.65
Table S765. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
CHD2 MUTATED | 8 | 10 | 7 | 0 |
CHD2 WILD-TYPE | 154 | 127 | 52 | 34 |
P value = 0.597 (Fisher's exact test), Q value = 0.99
Table S766. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
CHD2 MUTATED | 10 | 9 | 3 | 3 |
CHD2 WILD-TYPE | 125 | 103 | 66 | 76 |
P value = 0.905 (Fisher's exact test), Q value = 1
Table S767. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
CHD2 MUTATED | 4 | 3 | 2 | 0 | 2 |
CHD2 WILD-TYPE | 33 | 26 | 34 | 5 | 18 |
P value = 0.612 (Fisher's exact test), Q value = 1
Table S768. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
CHD2 MUTATED | 3 | 5 | 1 | 2 |
CHD2 WILD-TYPE | 40 | 33 | 26 | 17 |
P value = 0.523 (Fisher's exact test), Q value = 0.98
Table S769. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
CHD2 MUTATED | 7 | 9 | 9 |
CHD2 WILD-TYPE | 107 | 164 | 95 |
P value = 0.629 (Fisher's exact test), Q value = 1
Table S770. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
CHD2 MUTATED | 7 | 5 | 13 |
CHD2 WILD-TYPE | 109 | 101 | 156 |
P value = 0.347 (Fisher's exact test), Q value = 0.86
Table S771. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
CHD2 MUTATED | 11 | 5 | 9 |
CHD2 WILD-TYPE | 108 | 91 | 168 |
P value = 0.454 (Fisher's exact test), Q value = 0.94
Table S772. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
CHD2 MUTATED | 5 | 7 | 3 | 4 | 6 |
CHD2 WILD-TYPE | 81 | 92 | 86 | 61 | 47 |
P value = 0.374 (Fisher's exact test), Q value = 0.89
Table S773. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
CHD2 MUTATED | 8 | 1 | 6 | 10 |
CHD2 WILD-TYPE | 85 | 42 | 121 | 109 |
P value = 0.442 (Fisher's exact test), Q value = 0.93
Table S774. Gene #81: 'CHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
CHD2 MUTATED | 6 | 1 | 6 | 4 | 0 | 8 |
CHD2 WILD-TYPE | 68 | 46 | 82 | 61 | 27 | 73 |
P value = 0.856 (Fisher's exact test), Q value = 1
Table S775. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
USP28 MUTATED | 5 | 4 | 3 | 1 |
USP28 WILD-TYPE | 157 | 133 | 56 | 33 |
P value = 0.653 (Fisher's exact test), Q value = 1
Table S776. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
USP28 MUTATED | 5 | 3 | 1 | 4 |
USP28 WILD-TYPE | 130 | 109 | 68 | 75 |
P value = 0.146 (Fisher's exact test), Q value = 0.71
Table S777. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
USP28 MUTATED | 1 | 0 | 1 | 1 | 0 |
USP28 WILD-TYPE | 36 | 29 | 35 | 4 | 20 |
P value = 0.581 (Fisher's exact test), Q value = 0.99
Table S778. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
USP28 MUTATED | 2 | 0 | 1 | 0 |
USP28 WILD-TYPE | 41 | 38 | 26 | 19 |
P value = 0.718 (Fisher's exact test), Q value = 1
Table S779. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
USP28 MUTATED | 4 | 7 | 2 |
USP28 WILD-TYPE | 110 | 166 | 102 |
P value = 1 (Fisher's exact test), Q value = 1
Table S780. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
USP28 MUTATED | 4 | 3 | 6 |
USP28 WILD-TYPE | 112 | 103 | 163 |
P value = 0.619 (Fisher's exact test), Q value = 1
Table S781. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
USP28 MUTATED | 3 | 2 | 8 |
USP28 WILD-TYPE | 116 | 94 | 169 |
P value = 0.487 (Fisher's exact test), Q value = 0.96
Table S782. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
USP28 MUTATED | 1 | 3 | 4 | 4 | 1 |
USP28 WILD-TYPE | 85 | 96 | 85 | 61 | 52 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S783. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
USP28 MUTATED | 2 | 1 | 5 | 4 |
USP28 WILD-TYPE | 91 | 42 | 122 | 115 |
P value = 0.838 (Fisher's exact test), Q value = 1
Table S784. Gene #82: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
USP28 MUTATED | 3 | 1 | 4 | 2 | 1 | 1 |
USP28 WILD-TYPE | 71 | 46 | 84 | 63 | 26 | 80 |
P value = 0.716 (Fisher's exact test), Q value = 1
Table S785. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
GPS2 MUTATED | 3 | 5 | 1 | 1 |
GPS2 WILD-TYPE | 159 | 132 | 58 | 33 |
P value = 0.867 (Fisher's exact test), Q value = 1
Table S786. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
GPS2 MUTATED | 3 | 3 | 1 | 3 |
GPS2 WILD-TYPE | 132 | 109 | 68 | 76 |
P value = 0.478 (Fisher's exact test), Q value = 0.95
Table S787. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
GPS2 MUTATED | 3 | 0 | 1 | 0 | 0 |
GPS2 WILD-TYPE | 34 | 29 | 35 | 5 | 20 |
P value = 0.354 (Fisher's exact test), Q value = 0.87
Table S788. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
GPS2 MUTATED | 3 | 0 | 1 | 0 |
GPS2 WILD-TYPE | 40 | 38 | 26 | 19 |
P value = 0.922 (Fisher's exact test), Q value = 1
Table S789. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
GPS2 MUTATED | 3 | 5 | 2 |
GPS2 WILD-TYPE | 111 | 168 | 102 |
P value = 0.558 (Fisher's exact test), Q value = 0.98
Table S790. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
GPS2 MUTATED | 3 | 4 | 3 |
GPS2 WILD-TYPE | 113 | 102 | 166 |
P value = 0.238 (Fisher's exact test), Q value = 0.79
Table S791. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
GPS2 MUTATED | 4 | 4 | 2 |
GPS2 WILD-TYPE | 115 | 92 | 175 |
P value = 0.303 (Fisher's exact test), Q value = 0.84
Table S792. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
GPS2 MUTATED | 3 | 5 | 1 | 0 | 1 |
GPS2 WILD-TYPE | 83 | 94 | 88 | 65 | 52 |
P value = 1 (Fisher's exact test), Q value = 1
Table S793. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
GPS2 MUTATED | 2 | 1 | 4 | 3 |
GPS2 WILD-TYPE | 91 | 42 | 123 | 116 |
P value = 0.955 (Fisher's exact test), Q value = 1
Table S794. Gene #83: 'GPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
GPS2 MUTATED | 1 | 1 | 3 | 2 | 1 | 2 |
GPS2 WILD-TYPE | 73 | 46 | 85 | 63 | 26 | 79 |
P value = 0.559 (Fisher's exact test), Q value = 0.98
Table S795. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
F7 MUTATED | 3 | 4 | 0 | 1 |
F7 WILD-TYPE | 159 | 133 | 59 | 33 |
P value = 0.421 (Fisher's exact test), Q value = 0.92
Table S796. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
F7 MUTATED | 2 | 4 | 0 | 2 |
F7 WILD-TYPE | 133 | 108 | 69 | 77 |
P value = 0.902 (Fisher's exact test), Q value = 1
Table S797. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
F7 MUTATED | 3 | 3 | 2 |
F7 WILD-TYPE | 111 | 170 | 102 |
P value = 0.543 (Fisher's exact test), Q value = 0.98
Table S798. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
F7 MUTATED | 1 | 2 | 5 |
F7 WILD-TYPE | 115 | 104 | 164 |
P value = 0.893 (Fisher's exact test), Q value = 1
Table S799. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
F7 MUTATED | 2 | 1 | 4 |
F7 WILD-TYPE | 117 | 95 | 173 |
P value = 0.217 (Fisher's exact test), Q value = 0.78
Table S800. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
F7 MUTATED | 4 | 1 | 2 | 0 | 0 |
F7 WILD-TYPE | 82 | 98 | 87 | 65 | 53 |
P value = 0.0345 (Fisher's exact test), Q value = 0.44
Table S801. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
F7 MUTATED | 1 | 0 | 6 | 0 |
F7 WILD-TYPE | 92 | 43 | 121 | 119 |
Figure S97. Get High-res Image Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.92
Table S802. Gene #84: 'F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
F7 MUTATED | 1 | 0 | 4 | 0 | 0 | 2 |
F7 WILD-TYPE | 73 | 47 | 84 | 65 | 27 | 79 |
P value = 0.325 (Fisher's exact test), Q value = 0.85
Table S803. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
IRX4 MUTATED | 1 | 4 | 1 | 1 |
IRX4 WILD-TYPE | 161 | 133 | 58 | 33 |
P value = 0.382 (Fisher's exact test), Q value = 0.89
Table S804. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
IRX4 MUTATED | 1 | 3 | 1 | 3 |
IRX4 WILD-TYPE | 134 | 109 | 68 | 76 |
P value = 0.598 (Fisher's exact test), Q value = 0.99
Table S805. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
IRX4 MUTATED | 0 | 1 | 1 | 0 | 1 |
IRX4 WILD-TYPE | 37 | 28 | 35 | 5 | 19 |
P value = 0.443 (Fisher's exact test), Q value = 0.93
Table S806. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
IRX4 MUTATED | 0 | 1 | 1 | 1 |
IRX4 WILD-TYPE | 43 | 37 | 26 | 18 |
P value = 0.342 (Fisher's exact test), Q value = 0.86
Table S807. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
IRX4 MUTATED | 1 | 3 | 4 |
IRX4 WILD-TYPE | 113 | 170 | 100 |
P value = 0.735 (Fisher's exact test), Q value = 1
Table S808. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
IRX4 MUTATED | 3 | 1 | 4 |
IRX4 WILD-TYPE | 113 | 105 | 165 |
P value = 0.732 (Fisher's exact test), Q value = 1
Table S809. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
IRX4 MUTATED | 2 | 1 | 5 |
IRX4 WILD-TYPE | 117 | 95 | 172 |
P value = 0.75 (Fisher's exact test), Q value = 1
Table S810. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
IRX4 MUTATED | 1 | 1 | 3 | 2 | 1 |
IRX4 WILD-TYPE | 85 | 98 | 86 | 63 | 52 |
P value = 1 (Fisher's exact test), Q value = 1
Table S811. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
IRX4 MUTATED | 2 | 1 | 3 | 2 |
IRX4 WILD-TYPE | 91 | 42 | 124 | 117 |
P value = 0.974 (Fisher's exact test), Q value = 1
Table S812. Gene #85: 'IRX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
IRX4 MUTATED | 1 | 1 | 3 | 1 | 0 | 2 |
IRX4 WILD-TYPE | 73 | 46 | 85 | 64 | 27 | 79 |
P value = 0.392 (Fisher's exact test), Q value = 0.89
Table S813. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
HSP90AA1 MUTATED | 6 | 10 | 3 | 3 |
HSP90AA1 WILD-TYPE | 156 | 127 | 56 | 31 |
P value = 0.96 (Fisher's exact test), Q value = 1
Table S814. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
HSP90AA1 MUTATED | 8 | 6 | 3 | 5 |
HSP90AA1 WILD-TYPE | 127 | 106 | 66 | 74 |
P value = 0.0858 (Fisher's exact test), Q value = 0.57
Table S815. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
HSP90AA1 MUTATED | 0 | 4 | 3 | 0 | 0 |
HSP90AA1 WILD-TYPE | 37 | 25 | 33 | 5 | 20 |
P value = 0.0348 (Fisher's exact test), Q value = 0.44
Table S816. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
HSP90AA1 MUTATED | 0 | 5 | 2 | 0 |
HSP90AA1 WILD-TYPE | 43 | 33 | 25 | 19 |
Figure S98. Get High-res Image Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1
Table S817. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
HSP90AA1 MUTATED | 6 | 9 | 7 |
HSP90AA1 WILD-TYPE | 108 | 164 | 97 |
P value = 0.757 (Fisher's exact test), Q value = 1
Table S818. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
HSP90AA1 MUTATED | 5 | 6 | 11 |
HSP90AA1 WILD-TYPE | 111 | 100 | 158 |
P value = 0.0822 (Fisher's exact test), Q value = 0.57
Table S819. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
HSP90AA1 MUTATED | 4 | 10 | 8 |
HSP90AA1 WILD-TYPE | 115 | 86 | 169 |
P value = 0.159 (Fisher's exact test), Q value = 0.71
Table S820. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
HSP90AA1 MUTATED | 2 | 9 | 3 | 6 | 2 |
HSP90AA1 WILD-TYPE | 84 | 90 | 86 | 59 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
Table S821. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
HSP90AA1 MUTATED | 5 | 2 | 8 | 7 |
HSP90AA1 WILD-TYPE | 88 | 41 | 119 | 112 |
P value = 0.946 (Fisher's exact test), Q value = 1
Table S822. Gene #86: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
HSP90AA1 MUTATED | 3 | 2 | 6 | 5 | 1 | 5 |
HSP90AA1 WILD-TYPE | 71 | 45 | 82 | 60 | 26 | 76 |
P value = 0.789 (Fisher's exact test), Q value = 1
Table S823. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TTYH1 MUTATED | 3 | 2 | 2 | 0 |
TTYH1 WILD-TYPE | 159 | 135 | 57 | 34 |
P value = 0.769 (Fisher's exact test), Q value = 1
Table S824. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TTYH1 MUTATED | 4 | 1 | 1 | 1 |
TTYH1 WILD-TYPE | 131 | 111 | 68 | 78 |
P value = 0.328 (Fisher's exact test), Q value = 0.85
Table S825. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
TTYH1 MUTATED | 0 | 1 | 3 | 0 | 0 |
TTYH1 WILD-TYPE | 37 | 28 | 33 | 5 | 20 |
P value = 0.212 (Fisher's exact test), Q value = 0.77
Table S826. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
TTYH1 MUTATED | 0 | 2 | 2 | 0 |
TTYH1 WILD-TYPE | 43 | 36 | 25 | 19 |
P value = 0.161 (Fisher's exact test), Q value = 0.71
Table S827. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TTYH1 MUTATED | 4 | 1 | 2 |
TTYH1 WILD-TYPE | 110 | 172 | 102 |
P value = 0.238 (Fisher's exact test), Q value = 0.79
Table S828. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TTYH1 MUTATED | 2 | 0 | 5 |
TTYH1 WILD-TYPE | 114 | 106 | 164 |
P value = 0.201 (Fisher's exact test), Q value = 0.76
Table S829. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TTYH1 MUTATED | 4 | 2 | 1 |
TTYH1 WILD-TYPE | 115 | 94 | 176 |
P value = 0.027 (Fisher's exact test), Q value = 0.43
Table S830. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TTYH1 MUTATED | 4 | 0 | 0 | 1 | 2 |
TTYH1 WILD-TYPE | 82 | 99 | 89 | 64 | 51 |
Figure S99. Get High-res Image Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.51
Table S831. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TTYH1 MUTATED | 1 | 0 | 0 | 5 |
TTYH1 WILD-TYPE | 92 | 43 | 127 | 114 |
P value = 0.248 (Fisher's exact test), Q value = 0.79
Table S832. Gene #87: 'TTYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TTYH1 MUTATED | 2 | 0 | 0 | 3 | 0 | 1 |
TTYH1 WILD-TYPE | 72 | 47 | 88 | 62 | 27 | 80 |
P value = 0.247 (Fisher's exact test), Q value = 0.79
Table S833. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
IL10RB MUTATED | 1 | 4 | 2 | 0 |
IL10RB WILD-TYPE | 161 | 133 | 57 | 34 |
P value = 0.833 (Fisher's exact test), Q value = 1
Table S834. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
IL10RB MUTATED | 3 | 1 | 1 | 2 |
IL10RB WILD-TYPE | 132 | 111 | 68 | 77 |
P value = 0.235 (Fisher's exact test), Q value = 0.79
Table S835. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
IL10RB MUTATED | 0 | 0 | 3 | 0 | 1 |
IL10RB WILD-TYPE | 37 | 29 | 33 | 5 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
Table S836. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
IL10RB MUTATED | 2 | 1 | 1 | 0 |
IL10RB WILD-TYPE | 41 | 37 | 26 | 19 |
P value = 0.159 (Fisher's exact test), Q value = 0.71
Table S837. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
IL10RB MUTATED | 4 | 1 | 2 |
IL10RB WILD-TYPE | 110 | 172 | 102 |
P value = 0.889 (Fisher's exact test), Q value = 1
Table S838. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
IL10RB MUTATED | 2 | 1 | 4 |
IL10RB WILD-TYPE | 114 | 105 | 165 |
P value = 1 (Fisher's exact test), Q value = 1
Table S839. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
IL10RB MUTATED | 2 | 2 | 3 |
IL10RB WILD-TYPE | 117 | 94 | 174 |
P value = 0.827 (Fisher's exact test), Q value = 1
Table S840. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
IL10RB MUTATED | 1 | 1 | 3 | 1 | 1 |
IL10RB WILD-TYPE | 85 | 98 | 86 | 64 | 52 |
P value = 0.247 (Fisher's exact test), Q value = 0.79
Table S841. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
IL10RB MUTATED | 4 | 0 | 1 | 2 |
IL10RB WILD-TYPE | 89 | 43 | 126 | 117 |
P value = 0.884 (Fisher's exact test), Q value = 1
Table S842. Gene #88: 'IL10RB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
IL10RB MUTATED | 1 | 0 | 3 | 1 | 0 | 2 |
IL10RB WILD-TYPE | 73 | 47 | 85 | 64 | 27 | 79 |
P value = 0.744 (Fisher's exact test), Q value = 1
Table S843. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
THSD4 MUTATED | 6 | 3 | 1 | 0 |
THSD4 WILD-TYPE | 156 | 134 | 58 | 34 |
P value = 0.87 (Fisher's exact test), Q value = 1
Table S844. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
THSD4 MUTATED | 3 | 3 | 1 | 3 |
THSD4 WILD-TYPE | 132 | 109 | 68 | 76 |
P value = 0.926 (Fisher's exact test), Q value = 1
Table S845. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
THSD4 MUTATED | 2 | 1 | 1 | 0 | 0 |
THSD4 WILD-TYPE | 35 | 28 | 35 | 5 | 20 |
P value = 0.467 (Fisher's exact test), Q value = 0.94
Table S846. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
THSD4 MUTATED | 2 | 0 | 1 | 1 |
THSD4 WILD-TYPE | 41 | 38 | 26 | 18 |
P value = 0.714 (Fisher's exact test), Q value = 1
Table S847. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
THSD4 MUTATED | 2 | 6 | 2 |
THSD4 WILD-TYPE | 112 | 167 | 102 |
P value = 0.363 (Fisher's exact test), Q value = 0.89
Table S848. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
THSD4 MUTATED | 1 | 4 | 5 |
THSD4 WILD-TYPE | 115 | 102 | 164 |
P value = 0.141 (Fisher's exact test), Q value = 0.7
Table S849. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
THSD4 MUTATED | 3 | 0 | 7 |
THSD4 WILD-TYPE | 116 | 96 | 170 |
P value = 0.757 (Fisher's exact test), Q value = 1
Table S850. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
THSD4 MUTATED | 2 | 1 | 3 | 2 | 2 |
THSD4 WILD-TYPE | 84 | 98 | 86 | 63 | 51 |
P value = 0.73 (Fisher's exact test), Q value = 1
Table S851. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
THSD4 MUTATED | 2 | 0 | 5 | 3 |
THSD4 WILD-TYPE | 91 | 43 | 122 | 116 |
P value = 0.246 (Fisher's exact test), Q value = 0.79
Table S852. Gene #89: 'THSD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
THSD4 MUTATED | 3 | 0 | 5 | 0 | 0 | 2 |
THSD4 WILD-TYPE | 71 | 47 | 83 | 65 | 27 | 79 |
P value = 0.562 (Fisher's exact test), Q value = 0.98
Table S853. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
DDX3X MUTATED | 8 | 4 | 3 | 0 |
DDX3X WILD-TYPE | 154 | 133 | 56 | 34 |
P value = 0.515 (Fisher's exact test), Q value = 0.98
Table S854. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
DDX3X MUTATED | 6 | 6 | 2 | 1 |
DDX3X WILD-TYPE | 129 | 106 | 67 | 78 |
P value = 0.924 (Fisher's exact test), Q value = 1
Table S855. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
DDX3X MUTATED | 2 | 1 | 1 | 0 | 0 |
DDX3X WILD-TYPE | 35 | 28 | 35 | 5 | 20 |
P value = 0.687 (Fisher's exact test), Q value = 1
Table S856. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
DDX3X MUTATED | 2 | 2 | 0 | 0 |
DDX3X WILD-TYPE | 41 | 36 | 27 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
Table S857. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
DDX3X MUTATED | 4 | 7 | 4 |
DDX3X WILD-TYPE | 110 | 166 | 100 |
P value = 0.846 (Fisher's exact test), Q value = 1
Table S858. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
DDX3X MUTATED | 5 | 3 | 7 |
DDX3X WILD-TYPE | 111 | 103 | 162 |
P value = 1 (Fisher's exact test), Q value = 1
Table S859. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
DDX3X MUTATED | 4 | 4 | 7 |
DDX3X WILD-TYPE | 115 | 92 | 170 |
P value = 0.538 (Fisher's exact test), Q value = 0.98
Table S860. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
DDX3X MUTATED | 6 | 4 | 3 | 1 | 1 |
DDX3X WILD-TYPE | 80 | 95 | 86 | 64 | 52 |
P value = 0.269 (Fisher's exact test), Q value = 0.81
Table S861. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
DDX3X MUTATED | 6 | 2 | 4 | 2 |
DDX3X WILD-TYPE | 87 | 41 | 123 | 117 |
P value = 0.651 (Fisher's exact test), Q value = 1
Table S862. Gene #90: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
DDX3X MUTATED | 1 | 2 | 4 | 2 | 0 | 5 |
DDX3X WILD-TYPE | 73 | 45 | 84 | 63 | 27 | 76 |
P value = 0.0333 (Fisher's exact test), Q value = 0.44
Table S863. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
DGKG MUTATED | 3 | 5 | 6 | 0 |
DGKG WILD-TYPE | 159 | 132 | 53 | 34 |
Figure S100. Get High-res Image Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.81
Table S864. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
DGKG MUTATED | 5 | 6 | 0 | 3 |
DGKG WILD-TYPE | 130 | 106 | 69 | 76 |
P value = 0.295 (Fisher's exact test), Q value = 0.84
Table S865. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
DGKG MUTATED | 0 | 0 | 2 | 0 | 1 |
DGKG WILD-TYPE | 37 | 29 | 34 | 5 | 19 |
P value = 0.0655 (Fisher's exact test), Q value = 0.55
Table S866. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
DGKG MUTATED | 0 | 0 | 2 | 1 |
DGKG WILD-TYPE | 43 | 38 | 25 | 18 |
P value = 0.886 (Fisher's exact test), Q value = 1
Table S867. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
DGKG MUTATED | 5 | 6 | 3 |
DGKG WILD-TYPE | 109 | 167 | 101 |
P value = 0.888 (Fisher's exact test), Q value = 1
Table S868. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
DGKG MUTATED | 5 | 3 | 6 |
DGKG WILD-TYPE | 111 | 103 | 163 |
P value = 0.124 (Fisher's exact test), Q value = 0.66
Table S869. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
DGKG MUTATED | 1 | 4 | 9 |
DGKG WILD-TYPE | 118 | 92 | 168 |
P value = 0.405 (Fisher's exact test), Q value = 0.9
Table S870. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
DGKG MUTATED | 5 | 4 | 2 | 3 | 0 |
DGKG WILD-TYPE | 81 | 95 | 87 | 62 | 53 |
P value = 0.369 (Fisher's exact test), Q value = 0.89
Table S871. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
DGKG MUTATED | 2 | 1 | 7 | 2 |
DGKG WILD-TYPE | 91 | 42 | 120 | 117 |
P value = 0.0816 (Fisher's exact test), Q value = 0.57
Table S872. Gene #91: 'DGKG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
DGKG MUTATED | 0 | 1 | 7 | 1 | 0 | 3 |
DGKG WILD-TYPE | 74 | 46 | 81 | 64 | 27 | 78 |
P value = 0.0383 (Fisher's exact test), Q value = 0.45
Table S873. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
TAS2R9 MUTATED | 2 | 0 | 3 | 1 |
TAS2R9 WILD-TYPE | 160 | 137 | 56 | 33 |
Figure S101. Get High-res Image Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.79
Table S874. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
TAS2R9 MUTATED | 2 | 0 | 2 | 2 |
TAS2R9 WILD-TYPE | 133 | 112 | 67 | 77 |
P value = 0.435 (Fisher's exact test), Q value = 0.92
Table S875. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
TAS2R9 MUTATED | 2 | 4 | 0 |
TAS2R9 WILD-TYPE | 112 | 169 | 104 |
P value = 0.882 (Fisher's exact test), Q value = 1
Table S876. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
TAS2R9 MUTATED | 2 | 2 | 2 |
TAS2R9 WILD-TYPE | 114 | 104 | 167 |
P value = 0.491 (Fisher's exact test), Q value = 0.96
Table S877. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
TAS2R9 MUTATED | 2 | 0 | 4 |
TAS2R9 WILD-TYPE | 117 | 96 | 173 |
P value = 0.973 (Fisher's exact test), Q value = 1
Table S878. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
TAS2R9 MUTATED | 1 | 1 | 2 | 1 | 1 |
TAS2R9 WILD-TYPE | 85 | 98 | 87 | 64 | 52 |
P value = 0.889 (Fisher's exact test), Q value = 1
Table S879. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
TAS2R9 MUTATED | 1 | 0 | 3 | 2 |
TAS2R9 WILD-TYPE | 92 | 43 | 124 | 117 |
P value = 0.858 (Fisher's exact test), Q value = 1
Table S880. Gene #92: 'TAS2R9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
TAS2R9 MUTATED | 1 | 0 | 3 | 1 | 0 | 1 |
TAS2R9 WILD-TYPE | 73 | 47 | 85 | 64 | 27 | 80 |
P value = 0.236 (Fisher's exact test), Q value = 0.79
Table S881. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
COL7A1 MUTATED | 14 | 13 | 1 | 2 |
COL7A1 WILD-TYPE | 148 | 124 | 58 | 32 |
P value = 0.562 (Fisher's exact test), Q value = 0.98
Table S882. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
COL7A1 MUTATED | 9 | 11 | 3 | 7 |
COL7A1 WILD-TYPE | 126 | 101 | 66 | 72 |
P value = 0.768 (Fisher's exact test), Q value = 1
Table S883. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
COL7A1 MUTATED | 4 | 3 | 3 | 1 | 3 |
COL7A1 WILD-TYPE | 33 | 26 | 33 | 4 | 17 |
P value = 0.301 (Fisher's exact test), Q value = 0.84
Table S884. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
COL7A1 MUTATED | 4 | 2 | 5 | 3 |
COL7A1 WILD-TYPE | 39 | 36 | 22 | 16 |
P value = 0.914 (Fisher's exact test), Q value = 1
Table S885. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
COL7A1 MUTATED | 8 | 13 | 9 |
COL7A1 WILD-TYPE | 106 | 160 | 95 |
P value = 0.256 (Fisher's exact test), Q value = 0.8
Table S886. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
COL7A1 MUTATED | 13 | 6 | 11 |
COL7A1 WILD-TYPE | 103 | 100 | 158 |
P value = 0.221 (Fisher's exact test), Q value = 0.78
Table S887. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
COL7A1 MUTATED | 6 | 11 | 13 |
COL7A1 WILD-TYPE | 113 | 85 | 164 |
P value = 0.391 (Fisher's exact test), Q value = 0.89
Table S888. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
COL7A1 MUTATED | 9 | 10 | 4 | 5 | 2 |
COL7A1 WILD-TYPE | 77 | 89 | 85 | 60 | 51 |
P value = 0.574 (Fisher's exact test), Q value = 0.98
Table S889. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
COL7A1 MUTATED | 10 | 4 | 9 | 7 |
COL7A1 WILD-TYPE | 83 | 39 | 118 | 112 |
P value = 0.637 (Fisher's exact test), Q value = 1
Table S890. Gene #93: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
COL7A1 MUTATED | 3 | 5 | 7 | 7 | 1 | 7 |
COL7A1 WILD-TYPE | 71 | 42 | 81 | 58 | 26 | 74 |
P value = 0.296 (Fisher's exact test), Q value = 0.84
Table S891. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZNF513 MUTATED | 4 | 5 | 0 | 2 |
ZNF513 WILD-TYPE | 158 | 132 | 59 | 32 |
P value = 0.972 (Fisher's exact test), Q value = 1
Table S892. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZNF513 MUTATED | 3 | 4 | 2 | 2 |
ZNF513 WILD-TYPE | 132 | 108 | 67 | 77 |
P value = 0.293 (Fisher's exact test), Q value = 0.84
Table S893. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ZNF513 MUTATED | 2 | 0 | 2 | 1 | 1 |
ZNF513 WILD-TYPE | 35 | 29 | 34 | 4 | 19 |
P value = 0.937 (Fisher's exact test), Q value = 1
Table S894. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ZNF513 MUTATED | 3 | 1 | 1 | 1 |
ZNF513 WILD-TYPE | 40 | 37 | 26 | 18 |
P value = 0.456 (Fisher's exact test), Q value = 0.94
Table S895. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZNF513 MUTATED | 4 | 6 | 1 |
ZNF513 WILD-TYPE | 110 | 167 | 103 |
P value = 0.538 (Fisher's exact test), Q value = 0.98
Table S896. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZNF513 MUTATED | 4 | 4 | 3 |
ZNF513 WILD-TYPE | 112 | 102 | 166 |
P value = 1 (Fisher's exact test), Q value = 1
Table S897. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZNF513 MUTATED | 3 | 3 | 5 |
ZNF513 WILD-TYPE | 116 | 93 | 172 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S898. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZNF513 MUTATED | 2 | 3 | 1 | 3 | 2 |
ZNF513 WILD-TYPE | 84 | 96 | 88 | 62 | 51 |
P value = 0.916 (Fisher's exact test), Q value = 1
Table S899. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZNF513 MUTATED | 2 | 1 | 5 | 3 |
ZNF513 WILD-TYPE | 91 | 42 | 122 | 116 |
P value = 0.759 (Fisher's exact test), Q value = 1
Table S900. Gene #94: 'ZNF513 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZNF513 MUTATED | 2 | 1 | 5 | 1 | 0 | 2 |
ZNF513 WILD-TYPE | 72 | 46 | 83 | 64 | 27 | 79 |
P value = 0.852 (Fisher's exact test), Q value = 1
Table S901. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ACSL5 MUTATED | 3 | 3 | 0 | 0 |
ACSL5 WILD-TYPE | 159 | 134 | 59 | 34 |
P value = 0.771 (Fisher's exact test), Q value = 1
Table S902. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ACSL5 MUTATED | 1 | 2 | 1 | 2 |
ACSL5 WILD-TYPE | 134 | 110 | 68 | 77 |
P value = 0.431 (Fisher's exact test), Q value = 0.92
Table S903. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ACSL5 MUTATED | 2 | 4 | 0 |
ACSL5 WILD-TYPE | 112 | 169 | 104 |
P value = 0.0308 (Fisher's exact test), Q value = 0.44
Table S904. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ACSL5 MUTATED | 2 | 4 | 0 |
ACSL5 WILD-TYPE | 114 | 102 | 169 |
Figure S102. Get High-res Image Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.83
Table S905. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ACSL5 MUTATED | 0 | 2 | 4 |
ACSL5 WILD-TYPE | 119 | 94 | 173 |
P value = 0.193 (Fisher's exact test), Q value = 0.74
Table S906. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ACSL5 MUTATED | 0 | 2 | 1 | 3 | 0 |
ACSL5 WILD-TYPE | 86 | 97 | 88 | 62 | 53 |
P value = 0.262 (Fisher's exact test), Q value = 0.81
Table S907. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ACSL5 MUTATED | 0 | 1 | 4 | 1 |
ACSL5 WILD-TYPE | 93 | 42 | 123 | 118 |
P value = 0.234 (Fisher's exact test), Q value = 0.79
Table S908. Gene #95: 'ACSL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ACSL5 MUTATED | 0 | 1 | 3 | 1 | 1 | 0 |
ACSL5 WILD-TYPE | 74 | 46 | 85 | 64 | 26 | 81 |
P value = 0.74 (Fisher's exact test), Q value = 1
Table S909. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
C18ORF8 MUTATED | 2 | 2 | 1 | 1 |
C18ORF8 WILD-TYPE | 160 | 135 | 58 | 33 |
P value = 0.143 (Fisher's exact test), Q value = 0.71
Table S910. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
C18ORF8 MUTATED | 0 | 3 | 2 | 1 |
C18ORF8 WILD-TYPE | 135 | 109 | 67 | 78 |
P value = 0.88 (Fisher's exact test), Q value = 1
Table S911. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
C18ORF8 MUTATED | 1 | 3 | 2 |
C18ORF8 WILD-TYPE | 113 | 170 | 102 |
P value = 0.58 (Fisher's exact test), Q value = 0.99
Table S912. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
C18ORF8 MUTATED | 3 | 1 | 2 |
C18ORF8 WILD-TYPE | 113 | 105 | 167 |
P value = 1 (Fisher's exact test), Q value = 1
Table S913. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
C18ORF8 MUTATED | 2 | 1 | 3 |
C18ORF8 WILD-TYPE | 117 | 95 | 174 |
P value = 0.524 (Fisher's exact test), Q value = 0.98
Table S914. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
C18ORF8 MUTATED | 2 | 1 | 1 | 0 | 2 |
C18ORF8 WILD-TYPE | 84 | 98 | 88 | 65 | 51 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S915. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
C18ORF8 MUTATED | 1 | 1 | 2 | 2 |
C18ORF8 WILD-TYPE | 92 | 42 | 125 | 117 |
P value = 0.497 (Fisher's exact test), Q value = 0.96
Table S916. Gene #96: 'C18ORF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
C18ORF8 MUTATED | 2 | 0 | 3 | 1 | 0 | 0 |
C18ORF8 WILD-TYPE | 72 | 47 | 85 | 64 | 27 | 81 |
P value = 0.0518 (Fisher's exact test), Q value = 0.51
Table S917. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
PRB2 MUTATED | 0 | 5 | 1 | 1 |
PRB2 WILD-TYPE | 162 | 132 | 58 | 33 |
P value = 0.111 (Fisher's exact test), Q value = 0.62
Table S918. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
PRB2 MUTATED | 1 | 5 | 0 | 1 |
PRB2 WILD-TYPE | 134 | 107 | 69 | 78 |
P value = 0.0558 (Fisher's exact test), Q value = 0.52
Table S919. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
PRB2 MUTATED | 0 | 0 | 1 | 1 | 1 |
PRB2 WILD-TYPE | 37 | 29 | 35 | 4 | 19 |
P value = 0.868 (Fisher's exact test), Q value = 1
Table S920. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
PRB2 MUTATED | 2 | 1 | 0 | 0 |
PRB2 WILD-TYPE | 41 | 37 | 27 | 19 |
P value = 0.716 (Fisher's exact test), Q value = 1
Table S921. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
PRB2 MUTATED | 3 | 3 | 1 |
PRB2 WILD-TYPE | 111 | 170 | 103 |
P value = 0.564 (Fisher's exact test), Q value = 0.98
Table S922. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
PRB2 MUTATED | 2 | 3 | 2 |
PRB2 WILD-TYPE | 114 | 103 | 167 |
P value = 0.292 (Fisher's exact test), Q value = 0.84
Table S923. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
PRB2 MUTATED | 2 | 0 | 5 |
PRB2 WILD-TYPE | 117 | 96 | 172 |
P value = 0.549 (Fisher's exact test), Q value = 0.98
Table S924. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
PRB2 MUTATED | 2 | 1 | 2 | 0 | 2 |
PRB2 WILD-TYPE | 84 | 98 | 87 | 65 | 51 |
P value = 0.682 (Fisher's exact test), Q value = 1
Table S925. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
PRB2 MUTATED | 1 | 0 | 4 | 2 |
PRB2 WILD-TYPE | 92 | 43 | 123 | 117 |
P value = 0.63 (Fisher's exact test), Q value = 1
Table S926. Gene #97: 'PRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
PRB2 MUTATED | 1 | 0 | 4 | 1 | 0 | 1 |
PRB2 WILD-TYPE | 73 | 47 | 84 | 64 | 27 | 80 |
P value = 0.141 (Fisher's exact test), Q value = 0.7
Table S927. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
POU3F1 MUTATED | 0 | 2 | 0 | 1 |
POU3F1 WILD-TYPE | 162 | 135 | 59 | 33 |
P value = 0.167 (Fisher's exact test), Q value = 0.71
Table S928. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
POU3F1 MUTATED | 0 | 1 | 0 | 2 |
POU3F1 WILD-TYPE | 135 | 111 | 69 | 77 |
P value = 0.172 (Fisher's exact test), Q value = 0.72
Table S929. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
POU3F1 MUTATED | 2 | 0 | 1 |
POU3F1 WILD-TYPE | 112 | 173 | 103 |
P value = 0.79 (Fisher's exact test), Q value = 1
Table S930. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
POU3F1 MUTATED | 1 | 0 | 2 |
POU3F1 WILD-TYPE | 115 | 106 | 167 |
P value = 0.246 (Fisher's exact test), Q value = 0.79
Table S931. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
POU3F1 MUTATED | 0 | 2 | 1 |
POU3F1 WILD-TYPE | 119 | 94 | 176 |
P value = 0.626 (Fisher's exact test), Q value = 1
Table S932. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
POU3F1 MUTATED | 1 | 2 | 0 | 0 | 0 |
POU3F1 WILD-TYPE | 85 | 97 | 89 | 65 | 53 |
P value = 0.0345 (Fisher's exact test), Q value = 0.44
Table S933. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
POU3F1 MUTATED | 0 | 2 | 1 | 0 |
POU3F1 WILD-TYPE | 93 | 41 | 126 | 119 |
Figure S103. Get High-res Image Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.65
Table S934. Gene #98: 'POU3F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
POU3F1 MUTATED | 0 | 2 | 1 | 0 | 0 | 0 |
POU3F1 WILD-TYPE | 74 | 45 | 87 | 65 | 27 | 81 |
P value = 0.303 (Fisher's exact test), Q value = 0.84
Table S935. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
EZR MUTATED | 5 | 3 | 4 | 0 |
EZR WILD-TYPE | 157 | 134 | 55 | 34 |
P value = 0.894 (Fisher's exact test), Q value = 1
Table S936. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
EZR MUTATED | 5 | 4 | 1 | 2 |
EZR WILD-TYPE | 130 | 108 | 68 | 77 |
P value = 0.783 (Fisher's exact test), Q value = 1
Table S937. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
EZR MUTATED | 3 | 1 | 2 | 0 | 0 |
EZR WILD-TYPE | 34 | 28 | 34 | 5 | 20 |
P value = 0.719 (Fisher's exact test), Q value = 1
Table S938. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
EZR MUTATED | 1 | 2 | 2 | 1 |
EZR WILD-TYPE | 42 | 36 | 25 | 18 |
P value = 0.569 (Fisher's exact test), Q value = 0.98
Table S939. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
EZR MUTATED | 5 | 5 | 2 |
EZR WILD-TYPE | 109 | 168 | 102 |
P value = 0.869 (Fisher's exact test), Q value = 1
Table S940. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
EZR MUTATED | 3 | 4 | 5 |
EZR WILD-TYPE | 113 | 102 | 164 |
P value = 0.703 (Fisher's exact test), Q value = 1
Table S941. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
EZR MUTATED | 5 | 2 | 5 |
EZR WILD-TYPE | 114 | 94 | 172 |
P value = 0.322 (Fisher's exact test), Q value = 0.85
Table S942. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
EZR MUTATED | 1 | 3 | 3 | 1 | 4 |
EZR WILD-TYPE | 85 | 96 | 86 | 64 | 49 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S943. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
EZR MUTATED | 2 | 1 | 5 | 4 |
EZR WILD-TYPE | 91 | 42 | 122 | 115 |
P value = 0.744 (Fisher's exact test), Q value = 1
Table S944. Gene #99: 'EZR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
EZR MUTATED | 3 | 1 | 5 | 1 | 0 | 2 |
EZR WILD-TYPE | 71 | 46 | 83 | 64 | 27 | 79 |
P value = 0.297 (Fisher's exact test), Q value = 0.84
Table S945. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZEB2 MUTATED | 6 | 9 | 1 | 0 |
ZEB2 WILD-TYPE | 156 | 128 | 58 | 34 |
P value = 0.122 (Fisher's exact test), Q value = 0.66
Table S946. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZEB2 MUTATED | 6 | 7 | 3 | 0 |
ZEB2 WILD-TYPE | 129 | 105 | 66 | 79 |
P value = 0.898 (Fisher's exact test), Q value = 1
Table S947. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZEB2 MUTATED | 4 | 7 | 5 |
ZEB2 WILD-TYPE | 110 | 166 | 99 |
P value = 0.808 (Fisher's exact test), Q value = 1
Table S948. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZEB2 MUTATED | 6 | 4 | 6 |
ZEB2 WILD-TYPE | 110 | 102 | 163 |
P value = 0.596 (Fisher's exact test), Q value = 0.99
Table S949. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZEB2 MUTATED | 6 | 4 | 5 |
ZEB2 WILD-TYPE | 113 | 92 | 172 |
P value = 0.0244 (Fisher's exact test), Q value = 0.4
Table S950. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZEB2 MUTATED | 4 | 2 | 0 | 5 | 4 |
ZEB2 WILD-TYPE | 82 | 97 | 89 | 60 | 49 |
Figure S104. Get High-res Image Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1
Table S951. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZEB2 MUTATED | 5 | 1 | 5 | 4 |
ZEB2 WILD-TYPE | 88 | 42 | 122 | 115 |
P value = 0.966 (Fisher's exact test), Q value = 1
Table S952. Gene #100: 'ZEB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZEB2 MUTATED | 3 | 2 | 4 | 2 | 0 | 4 |
ZEB2 WILD-TYPE | 71 | 45 | 84 | 63 | 27 | 77 |
P value = 0.134 (Fisher's exact test), Q value = 0.7
Table S953. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
C12ORF43 MUTATED | 1 | 6 | 1 | 0 |
C12ORF43 WILD-TYPE | 161 | 131 | 58 | 34 |
P value = 0.52 (Fisher's exact test), Q value = 0.98
Table S954. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
C12ORF43 MUTATED | 4 | 3 | 1 | 0 |
C12ORF43 WILD-TYPE | 131 | 109 | 68 | 79 |
P value = 0.166 (Fisher's exact test), Q value = 0.71
Table S955. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
C12ORF43 MUTATED | 0 | 0 | 1 | 0 | 2 |
C12ORF43 WILD-TYPE | 37 | 29 | 35 | 5 | 18 |
P value = 0.0863 (Fisher's exact test), Q value = 0.57
Table S956. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
C12ORF43 MUTATED | 1 | 0 | 0 | 2 |
C12ORF43 WILD-TYPE | 42 | 38 | 27 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
Table S957. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
C12ORF43 MUTATED | 2 | 3 | 2 |
C12ORF43 WILD-TYPE | 112 | 170 | 102 |
P value = 0.719 (Fisher's exact test), Q value = 1
Table S958. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
C12ORF43 MUTATED | 1 | 2 | 4 |
C12ORF43 WILD-TYPE | 115 | 104 | 165 |
P value = 0.0514 (Fisher's exact test), Q value = 0.51
Table S959. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
C12ORF43 MUTATED | 0 | 4 | 3 |
C12ORF43 WILD-TYPE | 119 | 92 | 174 |
P value = 0.252 (Fisher's exact test), Q value = 0.8
Table S960. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
C12ORF43 MUTATED | 2 | 4 | 0 | 1 | 0 |
C12ORF43 WILD-TYPE | 84 | 95 | 89 | 64 | 53 |
P value = 0.527 (Fisher's exact test), Q value = 0.98
Table S961. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
C12ORF43 MUTATED | 3 | 1 | 1 | 2 |
C12ORF43 WILD-TYPE | 90 | 42 | 126 | 117 |
P value = 0.551 (Fisher's exact test), Q value = 0.98
Table S962. Gene #101: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
C12ORF43 MUTATED | 0 | 1 | 1 | 2 | 0 | 3 |
C12ORF43 WILD-TYPE | 74 | 46 | 87 | 63 | 27 | 78 |
P value = 0.0365 (Fisher's exact test), Q value = 0.45
Table S963. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NAP1L1 MUTATED | 2 | 2 | 3 | 3 |
NAP1L1 WILD-TYPE | 160 | 135 | 56 | 31 |
Figure S105. Get High-res Image Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.81
Table S964. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NAP1L1 MUTATED | 6 | 3 | 0 | 1 |
NAP1L1 WILD-TYPE | 129 | 109 | 69 | 78 |
P value = 0.556 (Fisher's exact test), Q value = 0.98
Table S965. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NAP1L1 MUTATED | 3 | 3 | 4 |
NAP1L1 WILD-TYPE | 111 | 170 | 100 |
P value = 0.231 (Fisher's exact test), Q value = 0.79
Table S966. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NAP1L1 MUTATED | 1 | 2 | 7 |
NAP1L1 WILD-TYPE | 115 | 104 | 162 |
P value = 0.167 (Fisher's exact test), Q value = 0.71
Table S967. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NAP1L1 MUTATED | 6 | 1 | 3 |
NAP1L1 WILD-TYPE | 113 | 95 | 174 |
P value = 0.0555 (Fisher's exact test), Q value = 0.52
Table S968. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NAP1L1 MUTATED | 1 | 3 | 0 | 2 | 4 |
NAP1L1 WILD-TYPE | 85 | 96 | 89 | 63 | 49 |
P value = 0.475 (Fisher's exact test), Q value = 0.95
Table S969. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NAP1L1 MUTATED | 3 | 0 | 2 | 5 |
NAP1L1 WILD-TYPE | 90 | 43 | 125 | 114 |
P value = 0.569 (Fisher's exact test), Q value = 0.98
Table S970. Gene #102: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NAP1L1 MUTATED | 4 | 0 | 2 | 1 | 0 | 3 |
NAP1L1 WILD-TYPE | 70 | 47 | 86 | 64 | 27 | 78 |
P value = 0.706 (Fisher's exact test), Q value = 1
Table S971. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
NAALADL1 MUTATED | 2 | 4 | 1 | 0 |
NAALADL1 WILD-TYPE | 160 | 133 | 58 | 34 |
P value = 0.909 (Fisher's exact test), Q value = 1
Table S972. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
NAALADL1 MUTATED | 2 | 3 | 1 | 1 |
NAALADL1 WILD-TYPE | 133 | 109 | 68 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
Table S973. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
NAALADL1 MUTATED | 2 | 3 | 2 |
NAALADL1 WILD-TYPE | 112 | 170 | 102 |
P value = 0.8 (Fisher's exact test), Q value = 1
Table S974. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
NAALADL1 MUTATED | 3 | 1 | 3 |
NAALADL1 WILD-TYPE | 113 | 105 | 166 |
P value = 0.701 (Fisher's exact test), Q value = 1
Table S975. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
NAALADL1 MUTATED | 1 | 2 | 4 |
NAALADL1 WILD-TYPE | 118 | 94 | 173 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S976. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
NAALADL1 MUTATED | 2 | 2 | 2 | 1 | 0 |
NAALADL1 WILD-TYPE | 84 | 97 | 87 | 64 | 53 |
P value = 0.0828 (Fisher's exact test), Q value = 0.57
Table S977. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
NAALADL1 MUTATED | 3 | 2 | 2 | 0 |
NAALADL1 WILD-TYPE | 90 | 41 | 125 | 119 |
P value = 0.287 (Fisher's exact test), Q value = 0.83
Table S978. Gene #103: 'NAALADL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
NAALADL1 MUTATED | 0 | 2 | 3 | 0 | 0 | 2 |
NAALADL1 WILD-TYPE | 74 | 45 | 85 | 65 | 27 | 79 |
P value = 0.387 (Fisher's exact test), Q value = 0.89
Table S979. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
DENND5B MUTATED | 7 | 10 | 3 | 0 |
DENND5B WILD-TYPE | 155 | 127 | 56 | 34 |
P value = 0.164 (Fisher's exact test), Q value = 0.71
Table S980. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
DENND5B MUTATED | 8 | 9 | 1 | 2 |
DENND5B WILD-TYPE | 127 | 103 | 68 | 77 |
P value = 0.11 (Fisher's exact test), Q value = 0.62
Table S981. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
DENND5B MUTATED | 5 | 1 | 1 | 1 | 0 |
DENND5B WILD-TYPE | 32 | 28 | 35 | 4 | 20 |
P value = 0.0099 (Fisher's exact test), Q value = 0.27
Table S982. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
DENND5B MUTATED | 7 | 0 | 1 | 0 |
DENND5B WILD-TYPE | 36 | 38 | 26 | 19 |
Figure S106. Get High-res Image Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.7
Table S983. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
DENND5B MUTATED | 9 | 9 | 2 |
DENND5B WILD-TYPE | 105 | 164 | 102 |
P value = 0.453 (Fisher's exact test), Q value = 0.94
Table S984. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
DENND5B MUTATED | 5 | 8 | 7 |
DENND5B WILD-TYPE | 111 | 98 | 162 |
P value = 0.384 (Fisher's exact test), Q value = 0.89
Table S985. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
DENND5B MUTATED | 9 | 4 | 7 |
DENND5B WILD-TYPE | 110 | 92 | 170 |
P value = 0.872 (Fisher's exact test), Q value = 1
Table S986. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
DENND5B MUTATED | 4 | 4 | 4 | 4 | 4 |
DENND5B WILD-TYPE | 82 | 95 | 85 | 61 | 49 |
P value = 0.771 (Fisher's exact test), Q value = 1
Table S987. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
DENND5B MUTATED | 4 | 1 | 7 | 8 |
DENND5B WILD-TYPE | 89 | 42 | 120 | 111 |
P value = 0.807 (Fisher's exact test), Q value = 1
Table S988. Gene #104: 'DENND5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
DENND5B MUTATED | 6 | 2 | 5 | 3 | 0 | 4 |
DENND5B WILD-TYPE | 68 | 45 | 83 | 62 | 27 | 77 |
P value = 0.985 (Fisher's exact test), Q value = 1
Table S989. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SF3B3 MUTATED | 9 | 8 | 3 | 1 |
SF3B3 WILD-TYPE | 153 | 129 | 56 | 33 |
P value = 0.957 (Fisher's exact test), Q value = 1
Table S990. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SF3B3 MUTATED | 8 | 5 | 4 | 4 |
SF3B3 WILD-TYPE | 127 | 107 | 65 | 75 |
P value = 0.151 (Fisher's exact test), Q value = 0.71
Table S991. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SF3B3 MUTATED | 2 | 0 | 3 | 1 | 0 |
SF3B3 WILD-TYPE | 35 | 29 | 33 | 4 | 20 |
P value = 0.4 (Fisher's exact test), Q value = 0.9
Table S992. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SF3B3 MUTATED | 2 | 1 | 3 | 0 |
SF3B3 WILD-TYPE | 41 | 37 | 24 | 19 |
P value = 0.49 (Fisher's exact test), Q value = 0.96
Table S993. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SF3B3 MUTATED | 7 | 10 | 3 |
SF3B3 WILD-TYPE | 107 | 163 | 101 |
P value = 0.2 (Fisher's exact test), Q value = 0.76
Table S994. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SF3B3 MUTATED | 7 | 8 | 5 |
SF3B3 WILD-TYPE | 109 | 98 | 164 |
P value = 0.6 (Fisher's exact test), Q value = 0.99
Table S995. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SF3B3 MUTATED | 5 | 4 | 12 |
SF3B3 WILD-TYPE | 114 | 92 | 165 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S996. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SF3B3 MUTATED | 4 | 7 | 4 | 3 | 3 |
SF3B3 WILD-TYPE | 82 | 92 | 85 | 62 | 50 |
P value = 0.849 (Fisher's exact test), Q value = 1
Table S997. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SF3B3 MUTATED | 4 | 2 | 9 | 6 |
SF3B3 WILD-TYPE | 89 | 41 | 118 | 113 |
P value = 0.158 (Fisher's exact test), Q value = 0.71
Table S998. Gene #105: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SF3B3 MUTATED | 2 | 1 | 4 | 6 | 4 | 4 |
SF3B3 WILD-TYPE | 72 | 46 | 84 | 59 | 23 | 77 |
P value = 0.087 (Fisher's exact test), Q value = 0.57
Table S999. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
KIAA1522 MUTATED | 3 | 8 | 1 | 3 |
KIAA1522 WILD-TYPE | 159 | 129 | 58 | 31 |
P value = 0.793 (Fisher's exact test), Q value = 1
Table S1000. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
KIAA1522 MUTATED | 4 | 6 | 2 | 3 |
KIAA1522 WILD-TYPE | 131 | 106 | 67 | 76 |
P value = 0.229 (Fisher's exact test), Q value = 0.79
Table S1001. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
KIAA1522 MUTATED | 3 | 0 | 0 | 0 | 0 |
KIAA1522 WILD-TYPE | 34 | 29 | 36 | 5 | 20 |
P value = 0.149 (Fisher's exact test), Q value = 0.71
Table S1002. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
KIAA1522 MUTATED | 3 | 0 | 0 | 0 |
KIAA1522 WILD-TYPE | 40 | 38 | 27 | 19 |
P value = 0.141 (Fisher's exact test), Q value = 0.7
Table S1003. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
KIAA1522 MUTATED | 4 | 10 | 1 |
KIAA1522 WILD-TYPE | 110 | 163 | 103 |
P value = 0.712 (Fisher's exact test), Q value = 1
Table S1004. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
KIAA1522 MUTATED | 5 | 5 | 5 |
KIAA1522 WILD-TYPE | 111 | 101 | 164 |
P value = 0.152 (Fisher's exact test), Q value = 0.71
Table S1005. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
KIAA1522 MUTATED | 3 | 7 | 5 |
KIAA1522 WILD-TYPE | 116 | 89 | 172 |
P value = 0.0755 (Fisher's exact test), Q value = 0.57
Table S1006. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
KIAA1522 MUTATED | 1 | 8 | 3 | 3 | 0 |
KIAA1522 WILD-TYPE | 85 | 91 | 86 | 62 | 53 |
P value = 0.586 (Fisher's exact test), Q value = 0.99
Table S1007. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
KIAA1522 MUTATED | 3 | 3 | 5 | 3 |
KIAA1522 WILD-TYPE | 90 | 40 | 122 | 116 |
P value = 0.24 (Fisher's exact test), Q value = 0.79
Table S1008. Gene #106: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
KIAA1522 MUTATED | 0 | 2 | 5 | 4 | 0 | 3 |
KIAA1522 WILD-TYPE | 74 | 45 | 83 | 61 | 27 | 78 |
P value = 0.0092 (Fisher's exact test), Q value = 0.27
Table S1009. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
GTF2I MUTATED | 2 | 8 | 6 | 0 |
GTF2I WILD-TYPE | 160 | 129 | 53 | 34 |
Figure S107. Get High-res Image Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1
Table S1010. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
GTF2I MUTATED | 5 | 7 | 2 | 2 |
GTF2I WILD-TYPE | 130 | 105 | 67 | 77 |
P value = 0.109 (Fisher's exact test), Q value = 0.62
Table S1011. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
GTF2I MUTATED | 1 | 1 | 0 | 1 | 0 |
GTF2I WILD-TYPE | 36 | 28 | 36 | 4 | 20 |
P value = 0.671 (Fisher's exact test), Q value = 1
Table S1012. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
GTF2I MUTATED | 1 | 2 | 0 | 0 |
GTF2I WILD-TYPE | 42 | 36 | 27 | 19 |
P value = 0.849 (Fisher's exact test), Q value = 1
Table S1013. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
GTF2I MUTATED | 5 | 6 | 5 |
GTF2I WILD-TYPE | 109 | 167 | 99 |
P value = 0.723 (Fisher's exact test), Q value = 1
Table S1014. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
GTF2I MUTATED | 6 | 3 | 7 |
GTF2I WILD-TYPE | 110 | 103 | 162 |
P value = 0.517 (Fisher's exact test), Q value = 0.98
Table S1015. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
GTF2I MUTATED | 7 | 3 | 6 |
GTF2I WILD-TYPE | 112 | 93 | 171 |
P value = 0.946 (Fisher's exact test), Q value = 1
Table S1016. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
GTF2I MUTATED | 5 | 4 | 3 | 2 | 2 |
GTF2I WILD-TYPE | 81 | 95 | 86 | 63 | 51 |
P value = 0.517 (Fisher's exact test), Q value = 0.98
Table S1017. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
GTF2I MUTATED | 5 | 0 | 5 | 6 |
GTF2I WILD-TYPE | 88 | 43 | 122 | 113 |
P value = 0.146 (Fisher's exact test), Q value = 0.71
Table S1018. Gene #107: 'GTF2I MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
GTF2I MUTATED | 1 | 0 | 7 | 3 | 0 | 5 |
GTF2I WILD-TYPE | 73 | 47 | 81 | 62 | 27 | 76 |
P value = 0.628 (Fisher's exact test), Q value = 1
Table S1019. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
MOAP1 MUTATED | 3 | 4 | 0 | 0 |
MOAP1 WILD-TYPE | 159 | 133 | 59 | 34 |
P value = 0.236 (Fisher's exact test), Q value = 0.79
Table S1020. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
MOAP1 MUTATED | 1 | 4 | 0 | 2 |
MOAP1 WILD-TYPE | 134 | 108 | 69 | 77 |
P value = 0.807 (Fisher's exact test), Q value = 1
Table S1021. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
MOAP1 MUTATED | 2 | 0 | 1 | 0 | 0 |
MOAP1 WILD-TYPE | 35 | 29 | 35 | 5 | 20 |
P value = 1 (Fisher's exact test), Q value = 1
Table S1022. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
MOAP1 MUTATED | 1 | 1 | 1 | 0 |
MOAP1 WILD-TYPE | 42 | 37 | 26 | 19 |
P value = 0.066 (Fisher's exact test), Q value = 0.55
Table S1023. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
MOAP1 MUTATED | 0 | 6 | 1 |
MOAP1 WILD-TYPE | 114 | 167 | 103 |
P value = 0.639 (Fisher's exact test), Q value = 1
Table S1024. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
MOAP1 MUTATED | 3 | 2 | 2 |
MOAP1 WILD-TYPE | 113 | 104 | 167 |
P value = 0.549 (Fisher's exact test), Q value = 0.98
Table S1025. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
MOAP1 MUTATED | 2 | 3 | 2 |
MOAP1 WILD-TYPE | 117 | 93 | 175 |
P value = 0.6 (Fisher's exact test), Q value = 0.99
Table S1026. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
MOAP1 MUTATED | 0 | 3 | 2 | 1 | 1 |
MOAP1 WILD-TYPE | 86 | 96 | 87 | 64 | 52 |
P value = 0.866 (Fisher's exact test), Q value = 1
Table S1027. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
MOAP1 MUTATED | 1 | 1 | 3 | 2 |
MOAP1 WILD-TYPE | 92 | 42 | 124 | 117 |
P value = 0.692 (Fisher's exact test), Q value = 1
Table S1028. Gene #108: 'MOAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
MOAP1 MUTATED | 2 | 1 | 2 | 0 | 1 | 1 |
MOAP1 WILD-TYPE | 72 | 46 | 86 | 65 | 26 | 80 |
P value = 0.441 (Fisher's exact test), Q value = 0.93
Table S1029. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
GAR1 MUTATED | 1 | 2 | 0 | 1 |
GAR1 WILD-TYPE | 161 | 135 | 59 | 33 |
P value = 0.118 (Fisher's exact test), Q value = 0.65
Table S1030. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
GAR1 MUTATED | 0 | 3 | 0 | 1 |
GAR1 WILD-TYPE | 135 | 109 | 69 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
Table S1031. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
GAR1 MUTATED | 1 | 2 | 1 |
GAR1 WILD-TYPE | 113 | 171 | 103 |
P value = 0.693 (Fisher's exact test), Q value = 1
Table S1032. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
GAR1 MUTATED | 1 | 2 | 1 |
GAR1 WILD-TYPE | 115 | 104 | 168 |
P value = 0.582 (Fisher's exact test), Q value = 0.99
Table S1033. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
GAR1 MUTATED | 1 | 0 | 3 |
GAR1 WILD-TYPE | 118 | 96 | 174 |
P value = 0.95 (Fisher's exact test), Q value = 1
Table S1034. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
GAR1 MUTATED | 1 | 1 | 1 | 0 | 1 |
GAR1 WILD-TYPE | 85 | 98 | 88 | 65 | 52 |
P value = 0.55 (Fisher's exact test), Q value = 0.98
Table S1035. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
GAR1 MUTATED | 0 | 0 | 3 | 1 |
GAR1 WILD-TYPE | 93 | 43 | 124 | 118 |
P value = 0.323 (Fisher's exact test), Q value = 0.85
Table S1036. Gene #109: 'GAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
GAR1 MUTATED | 1 | 0 | 2 | 0 | 1 | 0 |
GAR1 WILD-TYPE | 73 | 47 | 86 | 65 | 26 | 81 |
P value = 0.404 (Fisher's exact test), Q value = 0.9
Table S1037. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
RFTN2 MUTATED | 7 | 2 | 2 | 0 |
RFTN2 WILD-TYPE | 155 | 135 | 57 | 34 |
P value = 0.0382 (Fisher's exact test), Q value = 0.45
Table S1038. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
RFTN2 MUTATED | 2 | 4 | 5 | 0 |
RFTN2 WILD-TYPE | 133 | 108 | 64 | 79 |
Figure S108. Get High-res Image Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.95
Table S1039. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
RFTN2 MUTATED | 0 | 1 | 2 | 0 | 0 |
RFTN2 WILD-TYPE | 37 | 28 | 34 | 5 | 20 |
P value = 0.193 (Fisher's exact test), Q value = 0.74
Table S1040. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
RFTN2 MUTATED | 0 | 1 | 2 | 0 |
RFTN2 WILD-TYPE | 43 | 37 | 25 | 19 |
P value = 0.74 (Fisher's exact test), Q value = 1
Table S1041. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
RFTN2 MUTATED | 2 | 6 | 3 |
RFTN2 WILD-TYPE | 112 | 167 | 101 |
P value = 0.239 (Fisher's exact test), Q value = 0.79
Table S1042. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
RFTN2 MUTATED | 6 | 2 | 3 |
RFTN2 WILD-TYPE | 110 | 104 | 166 |
P value = 0.927 (Fisher's exact test), Q value = 1
Table S1043. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
RFTN2 MUTATED | 4 | 2 | 5 |
RFTN2 WILD-TYPE | 115 | 94 | 172 |
P value = 0.378 (Fisher's exact test), Q value = 0.89
Table S1044. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
RFTN2 MUTATED | 2 | 1 | 5 | 1 | 2 |
RFTN2 WILD-TYPE | 84 | 98 | 84 | 64 | 51 |
P value = 0.665 (Fisher's exact test), Q value = 1
Table S1045. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
RFTN2 MUTATED | 2 | 0 | 4 | 5 |
RFTN2 WILD-TYPE | 91 | 43 | 123 | 114 |
P value = 0.056 (Fisher's exact test), Q value = 0.52
Table S1046. Gene #110: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
RFTN2 MUTATED | 2 | 0 | 4 | 5 | 0 | 0 |
RFTN2 WILD-TYPE | 72 | 47 | 84 | 60 | 27 | 81 |
P value = 0.523 (Fisher's exact test), Q value = 0.98
Table S1047. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZFP36L2 MUTATED | 6 | 8 | 3 | 0 |
ZFP36L2 WILD-TYPE | 156 | 129 | 56 | 34 |
P value = 0.763 (Fisher's exact test), Q value = 1
Table S1048. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZFP36L2 MUTATED | 5 | 5 | 2 | 5 |
ZFP36L2 WILD-TYPE | 130 | 107 | 67 | 74 |
P value = 0.558 (Fisher's exact test), Q value = 0.98
Table S1049. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
ZFP36L2 MUTATED | 1 | 0 | 3 | 0 | 1 |
ZFP36L2 WILD-TYPE | 36 | 29 | 33 | 5 | 19 |
P value = 0.656 (Fisher's exact test), Q value = 1
Table S1050. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
ZFP36L2 MUTATED | 1 | 1 | 2 | 1 |
ZFP36L2 WILD-TYPE | 42 | 37 | 25 | 18 |
P value = 0.737 (Fisher's exact test), Q value = 1
Table S1051. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZFP36L2 MUTATED | 5 | 9 | 3 |
ZFP36L2 WILD-TYPE | 109 | 164 | 101 |
P value = 0.701 (Fisher's exact test), Q value = 1
Table S1052. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZFP36L2 MUTATED | 5 | 6 | 6 |
ZFP36L2 WILD-TYPE | 111 | 100 | 163 |
P value = 0.819 (Fisher's exact test), Q value = 1
Table S1053. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZFP36L2 MUTATED | 4 | 4 | 9 |
ZFP36L2 WILD-TYPE | 115 | 92 | 168 |
P value = 0.777 (Fisher's exact test), Q value = 1
Table S1054. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZFP36L2 MUTATED | 2 | 4 | 4 | 4 | 3 |
ZFP36L2 WILD-TYPE | 84 | 95 | 85 | 61 | 50 |
P value = 0.839 (Fisher's exact test), Q value = 1
Table S1055. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZFP36L2 MUTATED | 3 | 1 | 7 | 6 |
ZFP36L2 WILD-TYPE | 90 | 42 | 120 | 113 |
P value = 0.771 (Fisher's exact test), Q value = 1
Table S1056. Gene #111: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZFP36L2 MUTATED | 2 | 1 | 6 | 4 | 1 | 3 |
ZFP36L2 WILD-TYPE | 72 | 46 | 82 | 61 | 26 | 78 |
P value = 0.661 (Fisher's exact test), Q value = 1
Table S1057. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
GUCY2C MUTATED | 5 | 5 | 3 | 0 |
GUCY2C WILD-TYPE | 157 | 132 | 56 | 34 |
P value = 0.733 (Fisher's exact test), Q value = 1
Table S1058. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
GUCY2C MUTATED | 5 | 4 | 3 | 1 |
GUCY2C WILD-TYPE | 130 | 108 | 66 | 78 |
P value = 0.479 (Fisher's exact test), Q value = 0.95
Table S1059. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
GUCY2C MUTATED | 0 | 1 | 2 | 0 | 0 |
GUCY2C WILD-TYPE | 37 | 28 | 34 | 5 | 20 |
P value = 0.444 (Fisher's exact test), Q value = 0.93
Table S1060. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
GUCY2C MUTATED | 0 | 1 | 1 | 1 |
GUCY2C WILD-TYPE | 43 | 37 | 26 | 18 |
P value = 0.769 (Fisher's exact test), Q value = 1
Table S1061. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
GUCY2C MUTATED | 5 | 5 | 3 |
GUCY2C WILD-TYPE | 109 | 168 | 101 |
P value = 0.77 (Fisher's exact test), Q value = 1
Table S1062. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
GUCY2C MUTATED | 5 | 3 | 5 |
GUCY2C WILD-TYPE | 111 | 103 | 164 |
P value = 0.221 (Fisher's exact test), Q value = 0.78
Table S1063. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
GUCY2C MUTATED | 7 | 2 | 4 |
GUCY2C WILD-TYPE | 112 | 94 | 173 |
P value = 0.993 (Fisher's exact test), Q value = 1
Table S1064. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
GUCY2C MUTATED | 3 | 4 | 3 | 2 | 1 |
GUCY2C WILD-TYPE | 83 | 95 | 86 | 63 | 52 |
P value = 0.954 (Fisher's exact test), Q value = 1
Table S1065. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
GUCY2C MUTATED | 4 | 1 | 4 | 4 |
GUCY2C WILD-TYPE | 89 | 42 | 123 | 115 |
P value = 0.209 (Fisher's exact test), Q value = 0.77
Table S1066. Gene #112: 'GUCY2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
GUCY2C MUTATED | 0 | 1 | 3 | 2 | 2 | 5 |
GUCY2C WILD-TYPE | 74 | 46 | 85 | 63 | 25 | 76 |
P value = 0.14 (Fisher's exact test), Q value = 0.7
Table S1067. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
COPZ2 MUTATED | 0 | 2 | 0 | 1 |
COPZ2 WILD-TYPE | 162 | 135 | 59 | 33 |
P value = 0.074 (Fisher's exact test), Q value = 0.57
Table S1068. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
COPZ2 MUTATED | 0 | 3 | 0 | 0 |
COPZ2 WILD-TYPE | 135 | 109 | 69 | 79 |
P value = 0.257 (Fisher's exact test), Q value = 0.8
Table S1069. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
COPZ2 MUTATED | 0 | 3 | 0 |
COPZ2 WILD-TYPE | 114 | 170 | 104 |
P value = 0.11 (Fisher's exact test), Q value = 0.62
Table S1070. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
COPZ2 MUTATED | 1 | 2 | 0 |
COPZ2 WILD-TYPE | 115 | 104 | 169 |
P value = 0.61 (Fisher's exact test), Q value = 1
Table S1071. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
COPZ2 MUTATED | 0 | 1 | 2 |
COPZ2 WILD-TYPE | 119 | 95 | 175 |
P value = 0.468 (Fisher's exact test), Q value = 0.94
Table S1072. Gene #113: 'COPZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
COPZ2 MUTATED | 0 | 1 | 0 | 1 | 1 |
COPZ2 WILD-TYPE | 86 | 98 | 89 | 64 | 52 |
P value = 0.77 (Fisher's exact test), Q value = 1
Table S1073. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
ZNF791 MUTATED | 3 | 4 | 2 | 1 |
ZNF791 WILD-TYPE | 159 | 133 | 57 | 33 |
P value = 0.805 (Fisher's exact test), Q value = 1
Table S1074. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
ZNF791 MUTATED | 5 | 2 | 1 | 2 |
ZNF791 WILD-TYPE | 130 | 110 | 68 | 77 |
P value = 0.0153 (Fisher's exact test), Q value = 0.32
Table S1075. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
ZNF791 MUTATED | 7 | 1 | 2 |
ZNF791 WILD-TYPE | 107 | 172 | 102 |
Figure S109. Get High-res Image Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.98
Table S1076. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
ZNF791 MUTATED | 4 | 1 | 5 |
ZNF791 WILD-TYPE | 112 | 105 | 164 |
P value = 0.385 (Fisher's exact test), Q value = 0.89
Table S1077. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
ZNF791 MUTATED | 5 | 1 | 4 |
ZNF791 WILD-TYPE | 114 | 95 | 173 |
P value = 0.169 (Fisher's exact test), Q value = 0.71
Table S1078. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
ZNF791 MUTATED | 2 | 2 | 2 | 0 | 4 |
ZNF791 WILD-TYPE | 84 | 97 | 87 | 65 | 49 |
P value = 0.0806 (Fisher's exact test), Q value = 0.57
Table S1079. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
ZNF791 MUTATED | 2 | 0 | 1 | 7 |
ZNF791 WILD-TYPE | 91 | 43 | 126 | 112 |
P value = 0.389 (Fisher's exact test), Q value = 0.89
Table S1080. Gene #114: 'ZNF791 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
ZNF791 MUTATED | 4 | 0 | 1 | 3 | 0 | 2 |
ZNF791 WILD-TYPE | 70 | 47 | 87 | 62 | 27 | 79 |
P value = 0.304 (Fisher's exact test), Q value = 0.84
Table S1081. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
BUD13 MUTATED | 2 | 6 | 2 | 1 |
BUD13 WILD-TYPE | 160 | 131 | 57 | 33 |
P value = 0.2 (Fisher's exact test), Q value = 0.76
Table S1082. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
BUD13 MUTATED | 3 | 6 | 0 | 2 |
BUD13 WILD-TYPE | 132 | 106 | 69 | 77 |
P value = 0.951 (Fisher's exact test), Q value = 1
Table S1083. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
BUD13 MUTATED | 2 | 2 | 1 | 0 | 1 |
BUD13 WILD-TYPE | 35 | 27 | 35 | 5 | 19 |
P value = 0.522 (Fisher's exact test), Q value = 0.98
Table S1084. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
BUD13 MUTATED | 1 | 2 | 1 | 2 |
BUD13 WILD-TYPE | 42 | 36 | 26 | 17 |
P value = 0.462 (Fisher's exact test), Q value = 0.94
Table S1085. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
BUD13 MUTATED | 4 | 6 | 1 |
BUD13 WILD-TYPE | 110 | 167 | 103 |
P value = 0.0993 (Fisher's exact test), Q value = 0.6
Table S1086. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
BUD13 MUTATED | 3 | 6 | 2 |
BUD13 WILD-TYPE | 113 | 100 | 167 |
P value = 0.583 (Fisher's exact test), Q value = 0.99
Table S1087. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
BUD13 MUTATED | 2 | 4 | 5 |
BUD13 WILD-TYPE | 117 | 92 | 172 |
P value = 0.358 (Fisher's exact test), Q value = 0.88
Table S1088. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
BUD13 MUTATED | 1 | 5 | 1 | 3 | 1 |
BUD13 WILD-TYPE | 85 | 94 | 88 | 62 | 52 |
P value = 0.5 (Fisher's exact test), Q value = 0.97
Table S1089. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
BUD13 MUTATED | 1 | 2 | 5 | 3 |
BUD13 WILD-TYPE | 92 | 41 | 122 | 116 |
P value = 0.499 (Fisher's exact test), Q value = 0.97
Table S1090. Gene #115: 'BUD13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
BUD13 MUTATED | 1 | 2 | 5 | 2 | 0 | 1 |
BUD13 WILD-TYPE | 73 | 45 | 83 | 63 | 27 | 80 |
P value = 0.849 (Fisher's exact test), Q value = 1
Table S1091. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
HES1 MUTATED | 5 | 5 | 1 | 0 |
HES1 WILD-TYPE | 157 | 132 | 58 | 34 |
P value = 0.825 (Fisher's exact test), Q value = 1
Table S1092. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
HES1 MUTATED | 4 | 4 | 2 | 1 |
HES1 WILD-TYPE | 131 | 108 | 67 | 78 |
P value = 0.373 (Fisher's exact test), Q value = 0.89
Table S1093. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
HES1 MUTATED | 1 | 0 | 1 | 0 | 2 |
HES1 WILD-TYPE | 36 | 29 | 35 | 5 | 18 |
P value = 0.125 (Fisher's exact test), Q value = 0.67
Table S1094. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
HES1 MUTATED | 0 | 1 | 1 | 2 |
HES1 WILD-TYPE | 43 | 37 | 26 | 17 |
P value = 0.63 (Fisher's exact test), Q value = 1
Table S1095. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
HES1 MUTATED | 2 | 5 | 4 |
HES1 WILD-TYPE | 112 | 168 | 100 |
P value = 0.63 (Fisher's exact test), Q value = 1
Table S1096. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
HES1 MUTATED | 2 | 4 | 5 |
HES1 WILD-TYPE | 114 | 102 | 164 |
P value = 0.674 (Fisher's exact test), Q value = 1
Table S1097. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
HES1 MUTATED | 3 | 4 | 4 |
HES1 WILD-TYPE | 116 | 92 | 173 |
P value = 0.47 (Fisher's exact test), Q value = 0.94
Table S1098. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
HES1 MUTATED | 1 | 4 | 1 | 3 | 2 |
HES1 WILD-TYPE | 85 | 95 | 88 | 62 | 51 |
P value = 0.328 (Fisher's exact test), Q value = 0.85
Table S1099. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
HES1 MUTATED | 3 | 3 | 3 | 2 |
HES1 WILD-TYPE | 90 | 40 | 124 | 117 |
P value = 0.57 (Fisher's exact test), Q value = 0.98
Table S1100. Gene #116: 'HES1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
HES1 MUTATED | 1 | 3 | 2 | 3 | 0 | 2 |
HES1 WILD-TYPE | 73 | 44 | 86 | 62 | 27 | 79 |
P value = 0.033 (Fisher's exact test), Q value = 0.44
Table S1101. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
HORMAD1 MUTATED | 2 | 6 | 0 | 3 |
HORMAD1 WILD-TYPE | 160 | 131 | 59 | 31 |
Figure S110. Get High-res Image Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.42
Table S1102. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
HORMAD1 MUTATED | 0 | 5 | 2 | 4 |
HORMAD1 WILD-TYPE | 135 | 107 | 67 | 75 |
Figure S111. Get High-res Image Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1
Table S1103. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
HORMAD1 MUTATED | 2 | 1 | 3 | 0 | 1 |
HORMAD1 WILD-TYPE | 35 | 28 | 33 | 5 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
Table S1104. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
HORMAD1 MUTATED | 3 | 2 | 1 | 1 |
HORMAD1 WILD-TYPE | 40 | 36 | 26 | 18 |
P value = 0.74 (Fisher's exact test), Q value = 1
Table S1105. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
HORMAD1 MUTATED | 2 | 6 | 3 |
HORMAD1 WILD-TYPE | 112 | 167 | 101 |
P value = 0.464 (Fisher's exact test), Q value = 0.94
Table S1106. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
HORMAD1 MUTATED | 5 | 3 | 3 |
HORMAD1 WILD-TYPE | 111 | 103 | 166 |
P value = 0.0319 (Fisher's exact test), Q value = 0.44
Table S1107. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
HORMAD1 MUTATED | 0 | 5 | 6 |
HORMAD1 WILD-TYPE | 119 | 91 | 171 |
Figure S112. Get High-res Image Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1
Table S1108. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
HORMAD1 MUTATED | 2 | 5 | 2 | 1 | 1 |
HORMAD1 WILD-TYPE | 84 | 94 | 87 | 64 | 52 |
P value = 0.83 (Fisher's exact test), Q value = 1
Table S1109. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
HORMAD1 MUTATED | 3 | 2 | 3 | 3 |
HORMAD1 WILD-TYPE | 90 | 41 | 124 | 116 |
P value = 0.917 (Fisher's exact test), Q value = 1
Table S1110. Gene #117: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
HORMAD1 MUTATED | 2 | 2 | 2 | 1 | 1 | 3 |
HORMAD1 WILD-TYPE | 72 | 45 | 86 | 64 | 26 | 78 |
P value = 0.84 (Fisher's exact test), Q value = 1
Table S1111. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 162 | 137 | 59 | 34 |
SND1 MUTATED | 3 | 4 | 1 | 1 |
SND1 WILD-TYPE | 159 | 133 | 58 | 33 |
P value = 0.907 (Fisher's exact test), Q value = 1
Table S1112. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 69 | 79 |
SND1 MUTATED | 3 | 3 | 2 | 1 |
SND1 WILD-TYPE | 132 | 109 | 67 | 78 |
P value = 0.648 (Fisher's exact test), Q value = 1
Table S1113. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 29 | 36 | 5 | 20 |
SND1 MUTATED | 2 | 0 | 2 | 0 | 0 |
SND1 WILD-TYPE | 35 | 29 | 34 | 5 | 20 |
P value = 0.352 (Fisher's exact test), Q value = 0.87
Table S1114. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 38 | 27 | 19 |
SND1 MUTATED | 3 | 0 | 1 | 0 |
SND1 WILD-TYPE | 40 | 38 | 26 | 19 |
P value = 1 (Fisher's exact test), Q value = 1
Table S1115. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 173 | 104 |
SND1 MUTATED | 3 | 4 | 2 |
SND1 WILD-TYPE | 111 | 169 | 102 |
P value = 0.528 (Fisher's exact test), Q value = 0.98
Table S1116. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 116 | 106 | 169 |
SND1 MUTATED | 4 | 1 | 4 |
SND1 WILD-TYPE | 112 | 105 | 165 |
P value = 0.757 (Fisher's exact test), Q value = 1
Table S1117. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 119 | 96 | 177 |
SND1 MUTATED | 3 | 1 | 5 |
SND1 WILD-TYPE | 116 | 95 | 172 |
P value = 0.878 (Fisher's exact test), Q value = 1
Table S1118. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 86 | 99 | 89 | 65 | 53 |
SND1 MUTATED | 1 | 3 | 2 | 1 | 2 |
SND1 WILD-TYPE | 85 | 96 | 87 | 64 | 51 |
P value = 0.902 (Fisher's exact test), Q value = 1
Table S1119. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 93 | 43 | 127 | 119 |
SND1 MUTATED | 3 | 1 | 2 | 3 |
SND1 WILD-TYPE | 90 | 42 | 125 | 116 |
P value = 0.978 (Fisher's exact test), Q value = 1
Table S1120. Gene #118: 'SND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 74 | 47 | 88 | 65 | 27 | 81 |
SND1 MUTATED | 2 | 1 | 2 | 1 | 0 | 3 |
SND1 WILD-TYPE | 72 | 46 | 86 | 64 | 27 | 78 |
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Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
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Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/15190394/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BLCA-TP/15111049/BLCA-TP.transferedmergedcluster.txt
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Number of patients = 395
-
Number of significantly mutated genes = 118
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Number of Molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.