[1] "ofn"        "-oTBLCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BLCA-TP/15111049/BLCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/15190394/transformed.cor.cli.txt"

nPatients in clinical file=412, in cluster file=395, common to both=395
[1] 118 395
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           196            199 
  TP53 MUTATED TP53 WILD-TYPE 
           196            199 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              86              309 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              86              309 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           70           325 
  RB1 MUTATED RB1 WILD-TYPE 
           70           325 
[1] "FGFR3 MUTATION ANALYSIS"
[1] 3
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             56             339 
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             56             339 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              369 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              369 
[1] "RHOB MUTATION ANALYSIS"
[1] 3
  RHOB MUTATED RHOB WILD-TYPE 
            26            369 
  RHOB MUTATED RHOB WILD-TYPE 
            26            369 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
            46            349 
  ELF3 MUTATED ELF3 WILD-TYPE 
            46            349 
[1] "TSC1 MUTATION ANALYSIS"
[1] 3
  TSC1 MUTATED TSC1 WILD-TYPE 
            33            362 
  TSC1 MUTATED TSC1 WILD-TYPE 
            33            362 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
            103             292 
  KDM6A MUTATED KDM6A WILD-TYPE 
            103             292 
[1] "CDKN1A MUTATION ANALYSIS"
[1] 3
  CDKN1A MUTATED CDKN1A WILD-TYPE 
              35              360 
  CDKN1A MUTATED CDKN1A WILD-TYPE 
              35              360 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             61             334 
  EP300 MUTATED EP300 WILD-TYPE 
             61             334 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              97              298 
  ARID1A MUTATED ARID1A WILD-TYPE 
              97              298 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             56             339 
  STAG2 MUTATED STAG2 WILD-TYPE 
             56             339 
[1] "ERCC2 MUTATION ANALYSIS"
[1] 3
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             38             357 
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             38             357 
[1] "ZFP36L1 MUTATION ANALYSIS"
[1] 3
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
               29               366 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
               29               366 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             32             363 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             32             363 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            17            378 
  HRAS MUTATED HRAS WILD-TYPE 
            17            378 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              48              347 
  CREBBP MUTATED CREBBP WILD-TYPE 
              48              347 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            14            381 
  KRAS MUTATED KRAS WILD-TYPE 
            14            381 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              24              371 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              24              371 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            18            377 
  RHOA MUTATED RHOA WILD-TYPE 
            18            377 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            381 
  PTEN MUTATED PTEN WILD-TYPE 
            14            381 
[1] "C3ORF70 MUTATION ANALYSIS"
[1] 3
  C3ORF70 MUTATED C3ORF70 WILD-TYPE 
               17               378 
  C3ORF70 MUTATED C3ORF70 WILD-TYPE 
               17               378 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             22             373 
  RBM10 MUTATED RBM10 WILD-TYPE 
             22             373 
[1] "PSIP1 MUTATION ANALYSIS"
[1] 3
  PSIP1 MUTATED PSIP1 WILD-TYPE 
             20             375 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
             20             375 
[1] "ASXL2 MUTATION ANALYSIS"
[1] 3
  ASXL2 MUTATED ASXL2 WILD-TYPE 
             36             359 
  ASXL2 MUTATED ASXL2 WILD-TYPE 
             36             359 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            50            345 
  FAT1 MUTATED FAT1 WILD-TYPE 
            50            345 
[1] "SPTAN1 MUTATION ANALYSIS"
[1] 3
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
              45              350 
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
              45              350 
[1] "ZBTB7B MUTATION ANALYSIS"
[1] 3
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
              11              384 
  ZBTB7B MUTATED ZBTB7B WILD-TYPE 
              11              384 
[1] "CUL1 MUTATION ANALYSIS"
[1] 3
  CUL1 MUTATED CUL1 WILD-TYPE 
            19            376 
  CUL1 MUTATED CUL1 WILD-TYPE 
            19            376 
[1] "KLF5 MUTATION ANALYSIS"
[1] 3
  KLF5 MUTATED KLF5 WILD-TYPE 
            23            372 
  KLF5 MUTATED KLF5 WILD-TYPE 
            23            372 
[1] "RXRA MUTATION ANALYSIS"
[1] 3
  RXRA MUTATED RXRA WILD-TYPE 
            24            371 
  RXRA MUTATED RXRA WILD-TYPE 
            24            371 
[1] "GNA13 MUTATION ANALYSIS"
[1] 3
  GNA13 MUTATED GNA13 WILD-TYPE 
             12             383 
  GNA13 MUTATED GNA13 WILD-TYPE 
             12             383 
[1] "METTL3 MUTATION ANALYSIS"
[1] 3
  METTL3 MUTATED METTL3 WILD-TYPE 
              17              378 
  METTL3 MUTATED METTL3 WILD-TYPE 
              17              378 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             41             354 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             41             354 
[1] "RUNX1 MUTATION ANALYSIS"
[1] 3
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             14             381 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             14             381 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
            13            382 
  MBD1 MUTATED MBD1 WILD-TYPE 
            13            382 
[1] "FOXQ1 MUTATION ANALYSIS"
[1] 3
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
             14             381 
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
             14             381 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            15            380 
  RPTN MUTATED RPTN WILD-TYPE 
            15            380 
[1] "SF1 MUTATION ANALYSIS"
[1] 3
  SF1 MUTATED SF1 WILD-TYPE 
           10           385 
  SF1 MUTATED SF1 WILD-TYPE 
           10           385 
[1] "DNAH6 MUTATION ANALYSIS"
[1] 3
  DNAH6 MUTATED DNAH6 WILD-TYPE 
             16             379 
  DNAH6 MUTATED DNAH6 WILD-TYPE 
             16             379 
[1] "ZNF185 MUTATION ANALYSIS"
[1] 3
  ZNF185 MUTATED ZNF185 WILD-TYPE 
               5              390 
  ZNF185 MUTATED ZNF185 WILD-TYPE 
               5              390 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           53           342 
  ATM MUTATED ATM WILD-TYPE 
           53           342 
[1] "UNC93B1 MUTATION ANALYSIS"
[1] 3
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                7               388 
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                7               388 
[1] "UBA52 MUTATION ANALYSIS"
[1] 3
  UBA52 MUTATED UBA52 WILD-TYPE 
              7             388 
  UBA52 MUTATED UBA52 WILD-TYPE 
              7             388 
[1] "CNOT1 MUTATION ANALYSIS"
[1] 3
  CNOT1 MUTATED CNOT1 WILD-TYPE 
             21             374 
  CNOT1 MUTATED CNOT1 WILD-TYPE 
             21             374 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             48             347 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             48             347 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              21              374 
  FAM47C MUTATED FAM47C WILD-TYPE 
              21              374 
[1] "SF3B1 MUTATION ANALYSIS"
[1] 3
  SF3B1 MUTATED SF3B1 WILD-TYPE 
             24             371 
  SF3B1 MUTATED SF3B1 WILD-TYPE 
             24             371 
[1] "EPS8 MUTATION ANALYSIS"
[1] 3
  EPS8 MUTATED EPS8 WILD-TYPE 
            14            381 
  EPS8 MUTATED EPS8 WILD-TYPE 
            14            381 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             19             376 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             19             376 
[1] "OGDH MUTATION ANALYSIS"
[1] 3
  OGDH MUTATED OGDH WILD-TYPE 
            19            376 
  OGDH MUTATED OGDH WILD-TYPE 
            19            376 
[1] "SCARF2 MUTATION ANALYSIS"
[1] 3
  SCARF2 MUTATED SCARF2 WILD-TYPE 
               8              387 
  SCARF2 MUTATED SCARF2 WILD-TYPE 
               8              387 
[1] "SSH3 MUTATION ANALYSIS"
[1] 3
  SSH3 MUTATED SSH3 WILD-TYPE 
            15            380 
  SSH3 MUTATED SSH3 WILD-TYPE 
            15            380 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              5             390 
  HLA-A MUTATED HLA-A WILD-TYPE 
              5             390 
[1] "PARD3 MUTATION ANALYSIS"
[1] 3
  PARD3 MUTATED PARD3 WILD-TYPE 
             23             372 
  PARD3 MUTATED PARD3 WILD-TYPE 
             23             372 
[1] "BAP1 MUTATION ANALYSIS"
[1] 3
  BAP1 MUTATED BAP1 WILD-TYPE 
            14            381 
  BAP1 MUTATED BAP1 WILD-TYPE 
            14            381 
[1] "RIPK4 MUTATION ANALYSIS"
[1] 3
  RIPK4 MUTATED RIPK4 WILD-TYPE 
             17             378 
  RIPK4 MUTATED RIPK4 WILD-TYPE 
             17             378 
[1] "TMCO4 MUTATION ANALYSIS"
[1] 3
  TMCO4 MUTATED TMCO4 WILD-TYPE 
             12             383 
  TMCO4 MUTATED TMCO4 WILD-TYPE 
             12             383 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            14            381 
  CDH1 MUTATED CDH1 WILD-TYPE 
            14            381 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             7            388 
  NRAS MUTATED NRAS WILD-TYPE 
             7            388 
[1] "ARID1B MUTATION ANALYSIS"
[1] 3
  ARID1B MUTATED ARID1B WILD-TYPE 
              23              372 
  ARID1B MUTATED ARID1B WILD-TYPE 
              23              372 
[1] "ZNF511 MUTATION ANALYSIS"
[1] 3
  ZNF511 MUTATED ZNF511 WILD-TYPE 
              10              385 
  ZNF511 MUTATED ZNF511 WILD-TYPE 
              10              385 
[1] "TFG MUTATION ANALYSIS"
[1] 3
  TFG MUTATED TFG WILD-TYPE 
           11           384 
  TFG MUTATED TFG WILD-TYPE 
           11           384 
[1] "FUS MUTATION ANALYSIS"
[1] 3
  FUS MUTATED FUS WILD-TYPE 
            9           386 
  FUS MUTATED FUS WILD-TYPE 
            9           386 
[1] "ASXL1 MUTATION ANALYSIS"
[1] 3
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             22             373 
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             22             373 
[1] "CNOT3 MUTATION ANALYSIS"
[1] 3
  CNOT3 MUTATED CNOT3 WILD-TYPE 
             11             384 
  CNOT3 MUTATED CNOT3 WILD-TYPE 
             11             384 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             29             366 
  ARID2 MUTATED ARID2 WILD-TYPE 
             29             366 
[1] "ZNF773 MUTATION ANALYSIS"
[1] 3
  ZNF773 MUTATED ZNF773 WILD-TYPE 
               7              388 
  ZNF773 MUTATED ZNF773 WILD-TYPE 
               7              388 
[1] "DAZAP1 MUTATION ANALYSIS"
[1] 3
  DAZAP1 MUTATED DAZAP1 WILD-TYPE 
               6              389 
  DAZAP1 MUTATED DAZAP1 WILD-TYPE 
               6              389 
[1] "ADC MUTATION ANALYSIS"
[1] 3
  ADC MUTATED ADC WILD-TYPE 
            6           389 
  ADC MUTATED ADC WILD-TYPE 
            6           389 
[1] "FUT5 MUTATION ANALYSIS"
[1] 3
  FUT5 MUTATED FUT5 WILD-TYPE 
             3            392 
  FUT5 MUTATED FUT5 WILD-TYPE 
             3            392 
[1] "AHR MUTATION ANALYSIS"
[1] 3
  AHR MUTATED AHR WILD-TYPE 
           22           373 
  AHR MUTATED AHR WILD-TYPE 
           22           373 
[1] "THRAP3 MUTATION ANALYSIS"
[1] 3
  THRAP3 MUTATED THRAP3 WILD-TYPE 
              14              381 
  THRAP3 MUTATED THRAP3 WILD-TYPE 
              14              381 
[1] "TFPI2 MUTATION ANALYSIS"
[1] 3
  TFPI2 MUTATED TFPI2 WILD-TYPE 
              6             389 
  TFPI2 MUTATED TFPI2 WILD-TYPE 
              6             389 
[1] "NPAS4 MUTATION ANALYSIS"
[1] 3
  NPAS4 MUTATED NPAS4 WILD-TYPE 
             13             382 
  NPAS4 MUTATED NPAS4 WILD-TYPE 
             13             382 
[1] "NFE2L3 MUTATION ANALYSIS"
[1] 3
  NFE2L3 MUTATED NFE2L3 WILD-TYPE 
              14              381 
  NFE2L3 MUTATED NFE2L3 WILD-TYPE 
              14              381 
[1] "TAF11 MUTATION ANALYSIS"
[1] 3
  TAF11 MUTATED TAF11 WILD-TYPE 
              7             388 
  TAF11 MUTATED TAF11 WILD-TYPE 
              7             388 
[1] "BCL2L1 MUTATION ANALYSIS"
[1] 3
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               4              391 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               4              391 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
              21              374 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
              21              374 
[1] "CHD2 MUTATION ANALYSIS"
[1] 3
  CHD2 MUTATED CHD2 WILD-TYPE 
            25            370 
  CHD2 MUTATED CHD2 WILD-TYPE 
            25            370 
[1] "USP28 MUTATION ANALYSIS"
[1] 3
  USP28 MUTATED USP28 WILD-TYPE 
             13             382 
  USP28 MUTATED USP28 WILD-TYPE 
             13             382 
[1] "GPS2 MUTATION ANALYSIS"
[1] 3
  GPS2 MUTATED GPS2 WILD-TYPE 
            10            385 
  GPS2 MUTATED GPS2 WILD-TYPE 
            10            385 
[1] "F7 MUTATION ANALYSIS"
[1] 3
  F7 MUTATED F7 WILD-TYPE 
           8          387 
  F7 MUTATED F7 WILD-TYPE 
           8          387 
[1] "IRX4 MUTATION ANALYSIS"
[1] 3
  IRX4 MUTATED IRX4 WILD-TYPE 
             8            387 
  IRX4 MUTATED IRX4 WILD-TYPE 
             8            387 
[1] "HSP90AA1 MUTATION ANALYSIS"
[1] 3
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                22                373 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                22                373 
[1] "TTYH1 MUTATION ANALYSIS"
[1] 3
  TTYH1 MUTATED TTYH1 WILD-TYPE 
              7             388 
  TTYH1 MUTATED TTYH1 WILD-TYPE 
              7             388 
[1] "IL10RB MUTATION ANALYSIS"
[1] 3
  IL10RB MUTATED IL10RB WILD-TYPE 
               7              388 
  IL10RB MUTATED IL10RB WILD-TYPE 
               7              388 
[1] "THSD4 MUTATION ANALYSIS"
[1] 3
  THSD4 MUTATED THSD4 WILD-TYPE 
             10             385 
  THSD4 MUTATED THSD4 WILD-TYPE 
             10             385 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             15             380 
  DDX3X MUTATED DDX3X WILD-TYPE 
             15             380 
[1] "DGKG MUTATION ANALYSIS"
[1] 3
  DGKG MUTATED DGKG WILD-TYPE 
            14            381 
  DGKG MUTATED DGKG WILD-TYPE 
            14            381 
[1] "TAS2R9 MUTATION ANALYSIS"
[1] 3
  TAS2R9 MUTATED TAS2R9 WILD-TYPE 
               6              389 
  TAS2R9 MUTATED TAS2R9 WILD-TYPE 
               6              389 
[1] "COL7A1 MUTATION ANALYSIS"
[1] 3
  COL7A1 MUTATED COL7A1 WILD-TYPE 
              30              365 
  COL7A1 MUTATED COL7A1 WILD-TYPE 
              30              365 
[1] "ZNF513 MUTATION ANALYSIS"
[1] 3
  ZNF513 MUTATED ZNF513 WILD-TYPE 
              11              384 
  ZNF513 MUTATED ZNF513 WILD-TYPE 
              11              384 
[1] "ACSL5 MUTATION ANALYSIS"
[1] 3
  ACSL5 MUTATED ACSL5 WILD-TYPE 
              6             389 
  ACSL5 MUTATED ACSL5 WILD-TYPE 
              6             389 
[1] "C18ORF8 MUTATION ANALYSIS"
[1] 3
  C18ORF8 MUTATED C18ORF8 WILD-TYPE 
                6               389 
  C18ORF8 MUTATED C18ORF8 WILD-TYPE 
                6               389 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            388 
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            388 
[1] "POU3F1 MUTATION ANALYSIS"
[1] 3
  POU3F1 MUTATED POU3F1 WILD-TYPE 
               3              392 
  POU3F1 MUTATED POU3F1 WILD-TYPE 
               3              392 
[1] "EZR MUTATION ANALYSIS"
[1] 3
  EZR MUTATED EZR WILD-TYPE 
           12           383 
  EZR MUTATED EZR WILD-TYPE 
           12           383 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            16            379 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            16            379 
[1] "C12ORF43 MUTATION ANALYSIS"
[1] 3
  C12ORF43 MUTATED C12ORF43 WILD-TYPE 
                 8                387 
  C12ORF43 MUTATED C12ORF43 WILD-TYPE 
                 8                387 
[1] "NAP1L1 MUTATION ANALYSIS"
[1] 3
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
              10              385 
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
              10              385 
[1] "NAALADL1 MUTATION ANALYSIS"
[1] 3
  NAALADL1 MUTATED NAALADL1 WILD-TYPE 
                 7                388 
  NAALADL1 MUTATED NAALADL1 WILD-TYPE 
                 7                388 
[1] "DENND5B MUTATION ANALYSIS"
[1] 3
  DENND5B MUTATED DENND5B WILD-TYPE 
               20               375 
  DENND5B MUTATED DENND5B WILD-TYPE 
               20               375 
[1] "SF3B3 MUTATION ANALYSIS"
[1] 3
  SF3B3 MUTATED SF3B3 WILD-TYPE 
             21             374 
  SF3B3 MUTATED SF3B3 WILD-TYPE 
             21             374 
[1] "KIAA1522 MUTATION ANALYSIS"
[1] 3
  KIAA1522 MUTATED KIAA1522 WILD-TYPE 
                15                380 
  KIAA1522 MUTATED KIAA1522 WILD-TYPE 
                15                380 
[1] "GTF2I MUTATION ANALYSIS"
[1] 3
  GTF2I MUTATED GTF2I WILD-TYPE 
             16             379 
  GTF2I MUTATED GTF2I WILD-TYPE 
             16             379 
[1] "MOAP1 MUTATION ANALYSIS"
[1] 3
  MOAP1 MUTATED MOAP1 WILD-TYPE 
              7             388 
  MOAP1 MUTATED MOAP1 WILD-TYPE 
              7             388 
[1] "GAR1 MUTATION ANALYSIS"
[1] 3
  GAR1 MUTATED GAR1 WILD-TYPE 
             4            391 
  GAR1 MUTATED GAR1 WILD-TYPE 
             4            391 
[1] "RFTN2 MUTATION ANALYSIS"
[1] 3
  RFTN2 MUTATED RFTN2 WILD-TYPE 
             11             384 
  RFTN2 MUTATED RFTN2 WILD-TYPE 
             11             384 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               17               378 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               17               378 
[1] "GUCY2C MUTATION ANALYSIS"
[1] 3
  GUCY2C MUTATED GUCY2C WILD-TYPE 
              13              382 
  GUCY2C MUTATED GUCY2C WILD-TYPE 
              13              382 
[1] "COPZ2 MUTATION ANALYSIS"
[1] 3
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              3             392 
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              3             392 
[1] "ZNF791 MUTATION ANALYSIS"
[1] 3
  ZNF791 MUTATED ZNF791 WILD-TYPE 
              10              385 
  ZNF791 MUTATED ZNF791 WILD-TYPE 
              10              385 
[1] "BUD13 MUTATION ANALYSIS"
[1] 3
  BUD13 MUTATED BUD13 WILD-TYPE 
             11             384 
  BUD13 MUTATED BUD13 WILD-TYPE 
             11             384 
[1] "HES1 MUTATION ANALYSIS"
[1] 3
  HES1 MUTATED HES1 WILD-TYPE 
            11            384 
  HES1 MUTATED HES1 WILD-TYPE 
            11            384 
[1] "HORMAD1 MUTATION ANALYSIS"
[1] 3
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
               11               384 
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
               11               384 
[1] "SND1 MUTATION ANALYSIS"
[1] 3
  SND1 MUTATED SND1 WILD-TYPE 
             9            386 
  SND1 MUTATED SND1 WILD-TYPE 
             9            386 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 395 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 395 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       42     86     48     19
  TP53 WILD-TYPE    120     51     11     15
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           42            120
  CLUS_2           86             51
  CLUS_3           48             11
  CLUS_4           19             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       71     73     21     31
  TP53 WILD-TYPE     64     39     48     48
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           71             64
  CLUS_2           73             39
  CLUS_3           21             48
  CLUS_4           31             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       15     11     25      1     11
  TP53 WILD-TYPE     22     18     11      4      9
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             22
  CLUS_2           11             18
  CLUS_3           25             11
  CLUS_4            1              4
  CLUS_5           11              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       16     16     21     10
  TP53 WILD-TYPE     27     22      6      9
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             27
  CLUS_2           16             22
  CLUS_3           21              6
  CLUS_4           10              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       59     73     62
  TP53 WILD-TYPE     55    100     42
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           59             55
  CLUS_2           73            100
  CLUS_3           62             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       60     33    101
  TP53 WILD-TYPE     56     73     68
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           60             56
  CLUS_2           33             73
  CLUS_3          101             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       62     41     92
  TP53 WILD-TYPE     57     55     85
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           62             57
  CLUS_2           41             55
  CLUS_3           92             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       55     46     33     37     24
  TP53 WILD-TYPE     31     53     56     28     29
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           55             31
  CLUS_2           46             53
  CLUS_3           33             56
  CLUS_4           37             28
  CLUS_5           24             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       57     16     55     60
  TP53 WILD-TYPE     36     27     72     59
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           57             36
  CLUS_2           16             27
  CLUS_3           55             72
  CLUS_4           60             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       33     18     49     33      3     52
  TP53 WILD-TYPE     41     29     39     32     24     29
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33             41
  CLUS_2           18             29
  CLUS_3           49             39
  CLUS_4           33             32
  CLUS_5            3             24
  CLUS_6           52             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       37     24     17      8
  PIK3CA WILD-TYPE    125    113     42     26
D2V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             37              125
  CLUS_2             24              113
  CLUS_3             17               42
  CLUS_4              8               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       30     26     14     16
  PIK3CA WILD-TYPE    105     86     55     63
D2V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             30              105
  CLUS_2             26               86
  CLUS_3             14               55
  CLUS_4             16               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        6      6     11      0      2
  PIK3CA WILD-TYPE     31     23     25      5     18
D2V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               31
  CLUS_2              6               23
  CLUS_3             11               25
  CLUS_4              0                5
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        9      9      5      2
  PIK3CA WILD-TYPE     34     29     22     17
D2V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               34
  CLUS_2              9               29
  CLUS_3              5               22
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       24     35     26
  PIK3CA WILD-TYPE     90    138     78
D2V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             24               90
  CLUS_2             35              138
  CLUS_3             26               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       28     22     35
  PIK3CA WILD-TYPE     88     84    134
D2V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             28               88
  CLUS_2             22               84
  CLUS_3             35              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       25     20     40
  PIK3CA WILD-TYPE     94     76    137
D2V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             25               94
  CLUS_2             20               76
  CLUS_3             40              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       20     20     18     16     11
  PIK3CA WILD-TYPE     66     79     71     49     42
D2V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               66
  CLUS_2             20               79
  CLUS_3             18               71
  CLUS_4             16               49
  CLUS_5             11               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       22      8     28     26
  PIK3CA WILD-TYPE     71     35     99     93
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22               71
  CLUS_2              8               35
  CLUS_3             28               99
  CLUS_4             26               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED       17      8     23     10      7     19
  PIK3CA WILD-TYPE     57     39     65     55     20     62
D2V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17               57
  CLUS_2              8               39
  CLUS_3             23               65
  CLUS_4             10               55
  CLUS_5              7               20
  CLUS_6             19               62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        5     32     29      4
  RB1 WILD-TYPE    157    105     30     30
D3V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5           157
  CLUS_2          32           105
  CLUS_3          29            30
  CLUS_4           4            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       31     14      7     18
  RB1 WILD-TYPE    104     98     62     61
D3V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          31           104
  CLUS_2          14            98
  CLUS_3           7            62
  CLUS_4          18            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        4      6      7      0      3
  RB1 WILD-TYPE     33     23     29      5     17
D3V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            33
  CLUS_2           6            23
  CLUS_3           7            29
  CLUS_4           0             5
  CLUS_5           3            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      7      8      2
  RB1 WILD-TYPE     40     31     19     17
D3V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            40
  CLUS_2           7            31
  CLUS_3           8            19
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       31     14     23
  RB1 WILD-TYPE     83    159     81
D3V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          31            83
  CLUS_2          14           159
  CLUS_3          23            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       16      6     46
  RB1 WILD-TYPE    100    100    123
D3V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          16           100
  CLUS_2           6           100
  CLUS_3          46           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       21     12     36
  RB1 WILD-TYPE     98     84    141
D3V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          21            98
  CLUS_2          12            84
  CLUS_3          36           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED       23     18     13      8      7
  RB1 WILD-TYPE     63     81     76     57     46
D3V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          23            63
  CLUS_2          18            81
  CLUS_3          13            76
  CLUS_4           8            57
  CLUS_5           7            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       29      5     17     17
  RB1 WILD-TYPE     64     38    110    102
D3V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          29            64
  CLUS_2           5            38
  CLUS_3          17           110
  CLUS_4          17           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1 MUTATED       10      4     16      7      0     31
  RB1 WILD-TYPE     64     43     72     58     27     50
D3V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          10            64
  CLUS_2           4            43
  CLUS_3          16            72
  CLUS_4           7            58
  CLUS_5           0            27
  CLUS_6          31            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = FGFR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED       43      7      2      4
  FGFR3 WILD-TYPE    119    130     57     30
D4V1, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1            43             119
  CLUS_2             7             130
  CLUS_3             2              57
  CLUS_4             4              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        8      9     22     17
  FGFR3 WILD-TYPE    127    103     47     62
D4V2, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             8             127
  CLUS_2             9             103
  CLUS_3            22              47
  CLUS_4            17              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGFR3 MUTATED        9      2      4      0      0
  FGFR3 WILD-TYPE     28     27     32      5     20
D4V3, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             9              28
  CLUS_2             2              27
  CLUS_3             4              32
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        9      0      4      2
  FGFR3 WILD-TYPE     34     38     23     17
D4V4, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             9              34
  CLUS_2             0              38
  CLUS_3             4              23
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        6     40      9
  FGFR3 WILD-TYPE    108    133     95
D4V5, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             6             108
  CLUS_2            40             133
  CLUS_3             9              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        6     38     11
  FGFR3 WILD-TYPE    110     68    158
D4V6, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             6             110
  CLUS_2            38              68
  CLUS_3            11             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        5      9     42
  FGFR3 WILD-TYPE    114     87    135
D4V7, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             5             114
  CLUS_2             9              87
  CLUS_3            42             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGFR3 MUTATED        7      7     32      9      1
  FGFR3 WILD-TYPE     79     92     57     56     52
D4V8, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             7              79
  CLUS_2             7              92
  CLUS_3            32              57
  CLUS_4             9              56
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        3      2     36     11
  FGFR3 WILD-TYPE     90     41     91    108
D4V9, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             3              90
  CLUS_2             2              41
  CLUS_3            36              91
  CLUS_4            11             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGFR3 MUTATED        4      2     15      8     20      3
  FGFR3 WILD-TYPE     70     45     73     57      7     78
D4V10, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             4              70
  CLUS_2             2              45
  CLUS_3            15              73
  CLUS_4             8              57
  CLUS_5            20               7
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       11      6      5      4
  CDKN2A WILD-TYPE    151    131     54     30
D5V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11              151
  CLUS_2              6              131
  CLUS_3              5               54
  CLUS_4              4               30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       11      6      0      9
  CDKN2A WILD-TYPE    124    106     69     70
D5V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11              124
  CLUS_2              6              106
  CLUS_3              0               69
  CLUS_4              9               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        2      0      4      0      1
  CDKN2A WILD-TYPE     35     29     32      5     19
D5V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               29
  CLUS_3              4               32
  CLUS_4              0                5
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        3      0      2      2
  CDKN2A WILD-TYPE     40     38     25     17
D5V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               40
  CLUS_2              0               38
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        5     10     11
  CDKN2A WILD-TYPE    109    163     93
D5V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5              109
  CLUS_2             10              163
  CLUS_3             11               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        5      7     14
  CDKN2A WILD-TYPE    111     99    155
D5V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5              111
  CLUS_2              7               99
  CLUS_3             14              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        8      5     13
  CDKN2A WILD-TYPE    111     91    164
D5V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              8              111
  CLUS_2              5               91
  CLUS_3             13              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED       11      5      3      6      1
  CDKN2A WILD-TYPE     75     94     86     59     52
D5V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11               75
  CLUS_2              5               94
  CLUS_3              3               86
  CLUS_4              6               59
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       11      0      8      5
  CDKN2A WILD-TYPE     82     43    119    114
D5V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11               82
  CLUS_2              0               43
  CLUS_3              8              119
  CLUS_4              5              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        1      2      5      6      1      9
  CDKN2A WILD-TYPE     73     45     83     59     26     72
D5V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               73
  CLUS_2              2               45
  CLUS_3              5               83
  CLUS_4              6               59
  CLUS_5              1               26
  CLUS_6              9               72
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = RHOB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        5     15      3      3
  RHOB WILD-TYPE    157    122     56     31
D6V1, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            5            157
  CLUS_2           15            122
  CLUS_3            3             56
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        8     12      3      3
  RHOB WILD-TYPE    127    100     66     76
D6V2, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            8            127
  CLUS_2           12            100
  CLUS_3            3             66
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOB MUTATED        2      1      4      0      0
  RHOB WILD-TYPE     35     28     32      5     20
D6V3, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             28
  CLUS_3            4             32
  CLUS_4            0              5
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        2      2      3      0
  RHOB WILD-TYPE     41     36     24     19
D6V4, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             41
  CLUS_2            2             36
  CLUS_3            3             24
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED        5     15      6
  RHOB WILD-TYPE    109    158     98
D6V5, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            5            109
  CLUS_2           15            158
  CLUS_3            6             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED       11      8      7
  RHOB WILD-TYPE    105     98    162
D6V6, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1           11            105
  CLUS_2            8             98
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED        8      5     13
  RHOB WILD-TYPE    111     91    164
D6V7, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            8            111
  CLUS_2            5             91
  CLUS_3           13            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOB MUTATED        5      5      9      3      4
  RHOB WILD-TYPE     81     94     80     62     49
D6V8, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            5             81
  CLUS_2            5             94
  CLUS_3            9             80
  CLUS_4            3             62
  CLUS_5            4             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        5      2     10      8
  RHOB WILD-TYPE     88     41    117    111
D6V9, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            5             88
  CLUS_2            2             41
  CLUS_3           10            117
  CLUS_4            8            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOB MUTATED        5      3      5      5      3      4
  RHOB WILD-TYPE     69     44     83     60     24     77
D6V10, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            5             69
  CLUS_2            3             44
  CLUS_3            5             83
  CLUS_4            5             60
  CLUS_5            3             24
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = ELF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED       19     15      5      7
  ELF3 WILD-TYPE    143    122     54     27
D7V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           19            143
  CLUS_2           15            122
  CLUS_3            5             54
  CLUS_4            7             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        9     18      8     11
  ELF3 WILD-TYPE    126     94     61     68
D7V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            9            126
  CLUS_2           18             94
  CLUS_3            8             61
  CLUS_4           11             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        4      3      3      0      0
  ELF3 WILD-TYPE     33     26     33      5     20
D7V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            3             26
  CLUS_3            3             33
  CLUS_4            0              5
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        3      4      3      0
  ELF3 WILD-TYPE     40     34     24     19
D7V4, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            4             34
  CLUS_3            3             24
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        7     28     10
  ELF3 WILD-TYPE    107    145     94
D7V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            7            107
  CLUS_2           28            145
  CLUS_3           10             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED       16     17     12
  ELF3 WILD-TYPE    100     89    157
D7V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           16            100
  CLUS_2           17             89
  CLUS_3           12            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED       10     15     21
  ELF3 WILD-TYPE    109     81    156
D7V7, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           10            109
  CLUS_2           15             81
  CLUS_3           21            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        7     15      8     11      5
  ELF3 WILD-TYPE     79     84     81     54     48
D7V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            7             79
  CLUS_2           15             84
  CLUS_3            8             81
  CLUS_4           11             54
  CLUS_5            5             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        8      8     16     13
  ELF3 WILD-TYPE     85     35    111    106
D7V9, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            8             85
  CLUS_2            8             35
  CLUS_3           16            111
  CLUS_4           13            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF3 MUTATED        7      7     12     10      3      6
  ELF3 WILD-TYPE     67     40     76     55     24     75
D7V10, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            7             67
  CLUS_2            7             40
  CLUS_3           12             76
  CLUS_4           10             55
  CLUS_5            3             24
  CLUS_6            6             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = TSC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED       18     11      2      2
  TSC1 WILD-TYPE    144    126     57     32
D8V1, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           18            144
  CLUS_2           11            126
  CLUS_3            2             57
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED       10      9      7      7
  TSC1 WILD-TYPE    125    103     62     72
D8V2, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           10            125
  CLUS_2            9            103
  CLUS_3            7             62
  CLUS_4            7             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC1 MUTATED        6      2      2      0      2
  TSC1 WILD-TYPE     31     27     34      5     18
D8V3, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            6             31
  CLUS_2            2             27
  CLUS_3            2             34
  CLUS_4            0              5
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        6      3      1      2
  TSC1 WILD-TYPE     37     35     26     17
D8V4, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            6             37
  CLUS_2            3             35
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED       12     17      4
  TSC1 WILD-TYPE    102    156    100
D8V5, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           12            102
  CLUS_2           17            156
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED       11     12     10
  TSC1 WILD-TYPE    105     94    159
D8V6, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           11            105
  CLUS_2           12             94
  CLUS_3           10            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED       10     12     10
  TSC1 WILD-TYPE    109     84    167
D8V7, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           10            109
  CLUS_2           12             84
  CLUS_3           10            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC1 MUTATED        4     13      6      2      7
  TSC1 WILD-TYPE     82     86     83     63     46
D8V8, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            4             82
  CLUS_2           13             86
  CLUS_3            6             83
  CLUS_4            2             63
  CLUS_5            7             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        5      3     12     12
  TSC1 WILD-TYPE     88     40    115    107
D8V9, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            5             88
  CLUS_2            3             40
  CLUS_3           12            115
  CLUS_4           12            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSC1 MUTATED        7      3      8      8      2      4
  TSC1 WILD-TYPE     67     44     80     57     25     77
D8V10, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            7             67
  CLUS_2            3             44
  CLUS_3            8             80
  CLUS_4            8             57
  CLUS_5            2             25
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       42     38     10     13
  KDM6A WILD-TYPE    120     99     49     21
D9V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            42             120
  CLUS_2            38              99
  CLUS_3            10              49
  CLUS_4            13              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       25     36     28     14
  KDM6A WILD-TYPE    110     76     41     65
D9V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            25             110
  CLUS_2            36              76
  CLUS_3            28              41
  CLUS_4            14              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        9      5     10      2      3
  KDM6A WILD-TYPE     28     24     26      3     17
D9V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             9              28
  CLUS_2             5              24
  CLUS_3            10              26
  CLUS_4             2               3
  CLUS_5             3              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        9      7     10      3
  KDM6A WILD-TYPE     34     31     17     16
D9V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             9              34
  CLUS_2             7              31
  CLUS_3            10              17
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       18     58     26
  KDM6A WILD-TYPE     96    115     78
D9V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            18              96
  CLUS_2            58             115
  CLUS_3            26              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       31     38     33
  KDM6A WILD-TYPE     85     68    136
D9V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            31              85
  CLUS_2            38              68
  CLUS_3            33             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       26     25     50
  KDM6A WILD-TYPE     93     71    127
D9V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            26              93
  CLUS_2            25              71
  CLUS_3            50             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED       19     23     30     20      9
  KDM6A WILD-TYPE     67     76     59     45     44
D9V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            19              67
  CLUS_2            23              76
  CLUS_3            30              59
  CLUS_4            20              45
  CLUS_5             9              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       18     14     41     24
  KDM6A WILD-TYPE     75     29     86     95
D9V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            18              75
  CLUS_2            14              29
  CLUS_3            41              86
  CLUS_4            24              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED       17     15     27     10     12     16
  KDM6A WILD-TYPE     57     32     61     55     15     65
D9V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            17              57
  CLUS_2            15              32
  CLUS_3            27              61
  CLUS_4            10              55
  CLUS_5            12              15
  CLUS_6            16              65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = CDKN1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED       18     10      5      2
  CDKN1A WILD-TYPE    144    127     54     32
D10V1, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1             18              144
  CLUS_2             10              127
  CLUS_3              5               54
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED       10      9      4     12
  CDKN1A WILD-TYPE    125    103     65     67
D10V2, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1             10              125
  CLUS_2              9              103
  CLUS_3              4               65
  CLUS_4             12               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1A MUTATED        6      4      5      1      1
  CDKN1A WILD-TYPE     31     25     31      4     19
D10V3, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              6               31
  CLUS_2              4               25
  CLUS_3              5               31
  CLUS_4              1                4
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        7      4      4      2
  CDKN1A WILD-TYPE     36     34     23     17
D10V4, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              7               36
  CLUS_2              4               34
  CLUS_3              4               23
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED        8     19      7
  CDKN1A WILD-TYPE    106    154     97
D10V5, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              8              106
  CLUS_2             19              154
  CLUS_3              7               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED       11     12     11
  CDKN1A WILD-TYPE    105     94    158
D10V6, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1             11              105
  CLUS_2             12               94
  CLUS_3             11              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED        5     14     16
  CDKN1A WILD-TYPE    114     82    161
D10V7, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              5              114
  CLUS_2             14               82
  CLUS_3             16              161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1A MUTATED        4     13     10      6      2
  CDKN1A WILD-TYPE     82     86     79     59     51
D10V8, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              4               82
  CLUS_2             13               86
  CLUS_3             10               79
  CLUS_4              6               59
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        6      5     13     10
  CDKN1A WILD-TYPE     87     38    114    109
D10V9, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              6               87
  CLUS_2              5               38
  CLUS_3             13              114
  CLUS_4             10              109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN1A MUTATED        4      6      8      6      4      6
  CDKN1A WILD-TYPE     70     41     80     59     23     75
D10V10, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              4               70
  CLUS_2              6               41
  CLUS_3              8               80
  CLUS_4              6               59
  CLUS_5              4               23
  CLUS_6              6               75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = EP300 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       22     23     12      4
  EP300 WILD-TYPE    140    114     47     30
D11V1, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            22             140
  CLUS_2            23             114
  CLUS_3            12              47
  CLUS_4             4              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       23     16      9     13
  EP300 WILD-TYPE    112     96     60     66
D11V2, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            23             112
  CLUS_2            16              96
  CLUS_3             9              60
  CLUS_4            13              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP300 MUTATED        4      3      5      2      4
  EP300 WILD-TYPE     33     26     31      3     16
D11V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             3              26
  CLUS_3             5              31
  CLUS_4             2               3
  CLUS_5             4              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        8      3      3      4
  EP300 WILD-TYPE     35     35     24     15
D11V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             8              35
  CLUS_2             3              35
  CLUS_3             3              24
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       20     22     19
  EP300 WILD-TYPE     94    151     85
D11V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            20              94
  CLUS_2            22             151
  CLUS_3            19              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       18     12     31
  EP300 WILD-TYPE     98     94    138
D11V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            18              98
  CLUS_2            12              94
  CLUS_3            31             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       17     13     31
  EP300 WILD-TYPE    102     83    146
D11V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            17             102
  CLUS_2            13              83
  CLUS_3            31             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP300 MUTATED        9     16     15     12      9
  EP300 WILD-TYPE     77     83     74     53     44
D11V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             9              77
  CLUS_2            16              83
  CLUS_3            15              74
  CLUS_4            12              53
  CLUS_5             9              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       19      5     20     14
  EP300 WILD-TYPE     74     38    107    105
D11V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            19              74
  CLUS_2             5              38
  CLUS_3            20             107
  CLUS_4            14             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EP300 MUTATED        9      4     16      8      2     19
  EP300 WILD-TYPE     65     43     72     57     25     62
D11V10, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             9              65
  CLUS_2             4              43
  CLUS_3            16              72
  CLUS_4             8              57
  CLUS_5             2              25
  CLUS_6            19              62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       35     38     16      8
  ARID1A WILD-TYPE    127     99     43     26
D12V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             35              127
  CLUS_2             38               99
  CLUS_3             16               43
  CLUS_4              8               26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       28     34     15     20
  ARID1A WILD-TYPE    107     78     54     59
D12V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             28              107
  CLUS_2             34               78
  CLUS_3             15               54
  CLUS_4             20               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       12      8      6      2      4
  ARID1A WILD-TYPE     25     21     30      3     16
D12V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             12               25
  CLUS_2              8               21
  CLUS_3              6               30
  CLUS_4              2                3
  CLUS_5              4               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       11     14      5      2
  ARID1A WILD-TYPE     32     24     22     17
D12V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               32
  CLUS_2             14               24
  CLUS_3              5               22
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       31     44     22
  ARID1A WILD-TYPE     83    129     82
D12V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             31               83
  CLUS_2             44              129
  CLUS_3             22               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       30     28     39
  ARID1A WILD-TYPE     86     78    130
D12V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             30               86
  CLUS_2             28               78
  CLUS_3             39              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       26     32     38
  ARID1A WILD-TYPE     93     64    139
D12V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             26               93
  CLUS_2             32               64
  CLUS_3             38              139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       16     28     17     17     18
  ARID1A WILD-TYPE     70     71     72     48     35
D12V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             16               70
  CLUS_2             28               71
  CLUS_3             17               72
  CLUS_4             17               48
  CLUS_5             18               35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       18     15     31     30
  ARID1A WILD-TYPE     75     28     96     89
D12V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             18               75
  CLUS_2             15               28
  CLUS_3             31               96
  CLUS_4             30               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED       22     15     27     14      2     14
  ARID1A WILD-TYPE     52     32     61     51     25     67
D12V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             22               52
  CLUS_2             15               32
  CLUS_3             27               61
  CLUS_4             14               51
  CLUS_5              2               25
  CLUS_6             14               67
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED       30     13      5      8
  STAG2 WILD-TYPE    132    124     54     26
D13V1, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            30             132
  CLUS_2            13             124
  CLUS_3             5              54
  CLUS_4             8              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED       19     13     19      5
  STAG2 WILD-TYPE    116     99     50     74
D13V2, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            19             116
  CLUS_2            13              99
  CLUS_3            19              50
  CLUS_4             5              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        8      4      3      0      0
  STAG2 WILD-TYPE     29     25     33      5     20
D13V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             8              29
  CLUS_2             4              25
  CLUS_3             3              33
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        8      3      2      2
  STAG2 WILD-TYPE     35     35     25     17
D13V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             8              35
  CLUS_2             3              35
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED       14     29     12
  STAG2 WILD-TYPE    100    144     92
D13V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            14             100
  CLUS_2            29             144
  CLUS_3            12              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED       12     25     18
  STAG2 WILD-TYPE    104     81    151
D13V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            12             104
  CLUS_2            25              81
  CLUS_3            18             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED       16      7     32
  STAG2 WILD-TYPE    103     89    145
D13V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            16             103
  CLUS_2             7              89
  CLUS_3            32             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED       10      9     19     10      7
  STAG2 WILD-TYPE     76     90     70     55     46
D13V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            10              76
  CLUS_2             9              90
  CLUS_3            19              70
  CLUS_4            10              55
  CLUS_5             7              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED       11      1     25     14
  STAG2 WILD-TYPE     82     42    102    105
D13V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1            11              82
  CLUS_2             1              42
  CLUS_3            25             102
  CLUS_4            14             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAG2 MUTATED        9      2     15      6      8     11
  STAG2 WILD-TYPE     65     45     73     59     19     70
D13V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             9              65
  CLUS_2             2              45
  CLUS_3            15              73
  CLUS_4             6              59
  CLUS_5             8              19
  CLUS_6            11              70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = ERCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        6     19      7      6
  ERCC2 WILD-TYPE    156    118     52     28
D14V1, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             6             156
  CLUS_2            19             118
  CLUS_3             7              52
  CLUS_4             6              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED       10     17      3      8
  ERCC2 WILD-TYPE    125     95     66     71
D14V2, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1            10             125
  CLUS_2            17              95
  CLUS_3             3              66
  CLUS_4             8              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        3      0      6      1      1
  ERCC2 WILD-TYPE     34     29     30      4     19
D14V3, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              29
  CLUS_3             6              30
  CLUS_4             1               4
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        3      1      6      1
  ERCC2 WILD-TYPE     40     37     21     18
D14V4, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              37
  CLUS_3             6              21
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        9     17     11
  ERCC2 WILD-TYPE    105    156     93
D14V5, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             9             105
  CLUS_2            17             156
  CLUS_3            11              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED       11      8     18
  ERCC2 WILD-TYPE    105     98    151
D14V6, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1            11             105
  CLUS_2             8              98
  CLUS_3            18             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        7     14     16
  ERCC2 WILD-TYPE    112     82    161
D14V7, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             7             112
  CLUS_2            14              82
  CLUS_3            16             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        7     13      5      8      4
  ERCC2 WILD-TYPE     79     86     84     57     49
D14V8, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             7              79
  CLUS_2            13              86
  CLUS_3             5              84
  CLUS_4             8              57
  CLUS_5             4              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED       11      6     13      7
  ERCC2 WILD-TYPE     82     37    114    112
D14V9, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1            11              82
  CLUS_2             6              37
  CLUS_3            13             114
  CLUS_4             7             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERCC2 MUTATED        4      8     10      2      0     13
  ERCC2 WILD-TYPE     70     39     78     63     27     68
D14V10, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             4              70
  CLUS_2             8              39
  CLUS_3            10              78
  CLUS_4             2              63
  CLUS_5             0              27
  CLUS_6            13              68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = ZFP36L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED       10     10      5      4
  ZFP36L1 WILD-TYPE    152    127     54     30
D15V1, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1              10               152
  CLUS_2              10               127
  CLUS_3               5                54
  CLUS_4               4                30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        7     10      4      8
  ZFP36L1 WILD-TYPE    128    102     65     71
D15V2, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               7               128
  CLUS_2              10               102
  CLUS_3               4                65
  CLUS_4               8                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        2      1      3      0      1
  ZFP36L1 WILD-TYPE     35     28     33      5     19
D15V3, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                28
  CLUS_3               3                33
  CLUS_4               0                 5
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        1      1      3      2
  ZFP36L1 WILD-TYPE     42     37     24     17
D15V4, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               1                42
  CLUS_2               1                37
  CLUS_3               3                24
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L1 MUTATED        8     13      8
  ZFP36L1 WILD-TYPE    106    160     96
D15V5, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               8               106
  CLUS_2              13               160
  CLUS_3               8                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L1 MUTATED       11      9      9
  ZFP36L1 WILD-TYPE    105     97    160
D15V6, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1              11               105
  CLUS_2               9                97
  CLUS_3               9               160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L1 MUTATED        9      7     13
  ZFP36L1 WILD-TYPE    110     89    164
D15V7, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               9               110
  CLUS_2               7                89
  CLUS_3              13               164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        5      5      6      7      6
  ZFP36L1 WILD-TYPE     81     94     83     58     47
D15V8, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               5                81
  CLUS_2               5                94
  CLUS_3               6                83
  CLUS_4               7                58
  CLUS_5               6                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        6      3     10      9
  ZFP36L1 WILD-TYPE     87     40    117    110
D15V9, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               6                87
  CLUS_2               3                40
  CLUS_3              10               117
  CLUS_4               9               110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L1 MUTATED        6      4     12      2      0      4
  ZFP36L1 WILD-TYPE     68     43     76     63     27     77
D15V10, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               6                68
  CLUS_2               4                43
  CLUS_3              12                76
  CLUS_4               2                63
  CLUS_5               0                27
  CLUS_6               4                77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       16      8      6      1
  FBXW7 WILD-TYPE    146    129     53     33
D16V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            16             146
  CLUS_2             8             129
  CLUS_3             6              53
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       16      8      3      5
  FBXW7 WILD-TYPE    119    104     66     74
D16V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            16             119
  CLUS_2             8             104
  CLUS_3             3              66
  CLUS_4             5              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1      3      5      1      1
  FBXW7 WILD-TYPE     36     26     31      4     19
D16V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             3              26
  CLUS_3             5              31
  CLUS_4             1               4
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        2      4      3      2
  FBXW7 WILD-TYPE     41     34     24     17
D16V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             4              34
  CLUS_3             3              24
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        9     13     10
  FBXW7 WILD-TYPE    105    160     94
D16V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             9             105
  CLUS_2            13             160
  CLUS_3            10              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        6      8     18
  FBXW7 WILD-TYPE    110     98    151
D16V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6             110
  CLUS_2             8              98
  CLUS_3            18             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5      8     19
  FBXW7 WILD-TYPE    114     88    158
D16V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             114
  CLUS_2             8              88
  CLUS_3            19             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       11      7      7      6      1
  FBXW7 WILD-TYPE     75     92     82     59     52
D16V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              75
  CLUS_2             7              92
  CLUS_3             7              82
  CLUS_4             6              59
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       13      4     10      5
  FBXW7 WILD-TYPE     80     39    117    114
D16V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            13              80
  CLUS_2             4              39
  CLUS_3            10             117
  CLUS_4             5             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        2      6      7      4      2     11
  FBXW7 WILD-TYPE     72     41     81     61     25     70
D16V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             6              41
  CLUS_3             7              81
  CLUS_4             4              61
  CLUS_5             2              25
  CLUS_6            11              70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED       10      4      1      2
  HRAS WILD-TYPE    152    133     58     32
D17V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           10            152
  CLUS_2            4            133
  CLUS_3            1             58
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        4      2      2      9
  HRAS WILD-TYPE    131    110     67     70
D17V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4            131
  CLUS_2            2            110
  CLUS_3            2             67
  CLUS_4            9             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        3      0      1      2      0
  HRAS WILD-TYPE     34     29     35      3     20
D17V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             34
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            2              3
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        4      0      1      1
  HRAS WILD-TYPE     39     38     26     18
D17V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4             39
  CLUS_2            0             38
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        4      7      6
  HRAS WILD-TYPE    110    166     98
D17V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4            110
  CLUS_2            7            166
  CLUS_3            6             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        4      4      9
  HRAS WILD-TYPE    112    102    160
D17V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4            112
  CLUS_2            4            102
  CLUS_3            9            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        5      4      8
  HRAS WILD-TYPE    114     92    169
D17V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            5            114
  CLUS_2            4             92
  CLUS_3            8            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        5      3      7      1      1
  HRAS WILD-TYPE     81     96     82     64     52
D17V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            5             81
  CLUS_2            3             96
  CLUS_3            7             82
  CLUS_4            1             64
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        6      2      6      2
  HRAS WILD-TYPE     87     41    121    117
D17V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            6             87
  CLUS_2            2             41
  CLUS_3            6            121
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRAS MUTATED        3      2      3      0      1      7
  HRAS WILD-TYPE     71     45     85     65     26     74
D17V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             71
  CLUS_2            2             45
  CLUS_3            3             85
  CLUS_4            0             65
  CLUS_5            1             26
  CLUS_6            7             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       19     13     10      5
  CREBBP WILD-TYPE    143    124     49     29
D18V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             19              143
  CLUS_2             13              124
  CLUS_3             10               49
  CLUS_4              5               29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       20     15      7      6
  CREBBP WILD-TYPE    115     97     62     73
D18V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             20              115
  CLUS_2             15               97
  CLUS_3              7               62
  CLUS_4              6               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        5      4      6      0      2
  CREBBP WILD-TYPE     32     25     30      5     18
D18V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               32
  CLUS_2              4               25
  CLUS_3              6               30
  CLUS_4              0                5
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6      3      7      1
  CREBBP WILD-TYPE     37     35     20     18
D18V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               37
  CLUS_2              3               35
  CLUS_3              7               20
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       16     15     16
  CREBBP WILD-TYPE     98    158     88
D18V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             16               98
  CLUS_2             15              158
  CLUS_3             16               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       12     11     24
  CREBBP WILD-TYPE    104     95    145
D18V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             12              104
  CLUS_2             11               95
  CLUS_3             24              145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       15      3     29
  CREBBP WILD-TYPE    104     93    148
D18V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             15              104
  CLUS_2              3               93
  CLUS_3             29              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED       17      5      9      9      7
  CREBBP WILD-TYPE     69     94     80     56     46
D18V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             17               69
  CLUS_2              5               94
  CLUS_3              9               80
  CLUS_4              9               56
  CLUS_5              7               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       16      1     16     14
  CREBBP WILD-TYPE     77     42    111    105
D18V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             16               77
  CLUS_2              1               42
  CLUS_3             16              111
  CLUS_4             14              105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREBBP MUTATED       10      2     11      7      4     13
  CREBBP WILD-TYPE     64     45     77     58     23     68
D18V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             10               64
  CLUS_2              2               45
  CLUS_3             11               77
  CLUS_4              7               58
  CLUS_5              4               23
  CLUS_6             13               68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       11      2      0      1
  KRAS WILD-TYPE    151    135     59     33
D19V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11            151
  CLUS_2            2            135
  CLUS_3            0             59
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        4      6      2      2
  KRAS WILD-TYPE    131    106     67     77
D19V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4            131
  CLUS_2            6            106
  CLUS_3            2             67
  CLUS_4            2             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        0      0      0      0      0
  KRAS WILD-TYPE     37     29     36      5     20
D19V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        0      0      0      0
  KRAS WILD-TYPE     43     38     27     19
D19V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        6      6      2
  KRAS WILD-TYPE    108    167    102
D19V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            6            108
  CLUS_2            6            167
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        1      6      7
  KRAS WILD-TYPE    115    100    162
D19V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            1            115
  CLUS_2            6            100
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        4      1      8
  KRAS WILD-TYPE    115     95    169
D19V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4            115
  CLUS_2            1             95
  CLUS_3            8            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        5      1      4      2      1
  KRAS WILD-TYPE     81     98     85     63     52
D19V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            5             81
  CLUS_2            1             98
  CLUS_3            4             85
  CLUS_4            2             63
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        3      1      6      2
  KRAS WILD-TYPE     90     42    121    117
D19V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3             90
  CLUS_2            1             42
  CLUS_3            6            121
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        2      1      4      0      1      4
  KRAS WILD-TYPE     72     46     84     65     26     77
D19V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2             72
  CLUS_2            1             46
  CLUS_3            4             84
  CLUS_4            0             65
  CLUS_5            1             26
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED       18      1      1      4
  NFE2L2 WILD-TYPE    144    136     58     30
D20V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             18              144
  CLUS_2              1              136
  CLUS_3              1               58
  CLUS_4              4               30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED       11      3      2      8
  NFE2L2 WILD-TYPE    124    109     67     71
D20V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             11              124
  CLUS_2              3              109
  CLUS_3              2               67
  CLUS_4              8               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        1      4      3      1      3
  NFE2L2 WILD-TYPE     36     25     33      4     17
D20V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              4               25
  CLUS_3              3               33
  CLUS_4              1                4
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        3      4      4      1
  NFE2L2 WILD-TYPE     40     34     23     18
D20V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              4               34
  CLUS_3              4               23
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        8      3     12
  NFE2L2 WILD-TYPE    106    170     92
D20V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8              106
  CLUS_2              3              170
  CLUS_3             12               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        6      1     16
  NFE2L2 WILD-TYPE    110    105    153
D20V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              6              110
  CLUS_2              1              105
  CLUS_3             16              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED       12      4      7
  NFE2L2 WILD-TYPE    107     92    170
D20V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             12              107
  CLUS_2              4               92
  CLUS_3              7              170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        7      5      3      5      3
  NFE2L2 WILD-TYPE     79     94     86     60     50
D20V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7               79
  CLUS_2              5               94
  CLUS_3              3               86
  CLUS_4              5               60
  CLUS_5              3               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        8      1      5      8
  NFE2L2 WILD-TYPE     85     42    122    111
D20V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8               85
  CLUS_2              1               42
  CLUS_3              5              122
  CLUS_4              8              111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L2 MUTATED        4      1      2      8      1      6
  NFE2L2 WILD-TYPE     70     46     86     57     26     75
D20V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               70
  CLUS_2              1               46
  CLUS_3              2               86
  CLUS_4              8               57
  CLUS_5              1               26
  CLUS_6              6               75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        4     10      2      2
  RHOA WILD-TYPE    158    127     57     32
D21V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            158
  CLUS_2           10            127
  CLUS_3            2             57
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        3      7      3      5
  RHOA WILD-TYPE    132    105     66     74
D21V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            132
  CLUS_2            7            105
  CLUS_3            3             66
  CLUS_4            5             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        2      1      0      1      1
  RHOA WILD-TYPE     35     28     36      4     19
D21V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             28
  CLUS_3            0             36
  CLUS_4            1              4
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        1      3      0      1
  RHOA WILD-TYPE     42     35     27     18
D21V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             42
  CLUS_2            3             35
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4     11      3
  RHOA WILD-TYPE    110    162    101
D21V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            110
  CLUS_2           11            162
  CLUS_3            3            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        5      7      6
  RHOA WILD-TYPE    111     99    163
D21V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5            111
  CLUS_2            7             99
  CLUS_3            6            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      9      5
  RHOA WILD-TYPE    115     87    172
D21V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            115
  CLUS_2            9             87
  CLUS_3            5            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1      9      2      3      3
  RHOA WILD-TYPE     85     90     87     62     50
D21V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             85
  CLUS_2            9             90
  CLUS_3            2             87
  CLUS_4            3             62
  CLUS_5            3             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        3      3      6      6
  RHOA WILD-TYPE     90     40    121    113
D21V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             90
  CLUS_2            3             40
  CLUS_3            6            121
  CLUS_4            6            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        3      3      6      4      0      2
  RHOA WILD-TYPE     71     44     82     61     27     79
D21V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             71
  CLUS_2            3             44
  CLUS_3            6             82
  CLUS_4            4             61
  CLUS_5            0             27
  CLUS_6            2             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        5      5      3      1
  PTEN WILD-TYPE    157    132     56     33
D22V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5            157
  CLUS_2            5            132
  CLUS_3            3             56
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        7      6      1      0
  PTEN WILD-TYPE    128    106     68     79
D22V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7            128
  CLUS_2            6            106
  CLUS_3            1             68
  CLUS_4            0             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        1      0      2      0      2
  PTEN WILD-TYPE     36     29     34      5     18
D22V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             29
  CLUS_3            2             34
  CLUS_4            0              5
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      1      1      2
  PTEN WILD-TYPE     42     37     26     17
D22V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             42
  CLUS_2            1             37
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3      5      5
  PTEN WILD-TYPE    111    168     99
D22V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            111
  CLUS_2            5            168
  CLUS_3            5             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      4      8
  PTEN WILD-TYPE    115    102    161
D22V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            115
  CLUS_2            4            102
  CLUS_3            8            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        4      3      6
  PTEN WILD-TYPE    115     93    171
D22V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            115
  CLUS_2            3             93
  CLUS_3            6            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        4      3      3      2      1
  PTEN WILD-TYPE     82     96     86     63     52
D22V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             82
  CLUS_2            3             96
  CLUS_3            3             86
  CLUS_4            2             63
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3      0      5      5
  PTEN WILD-TYPE     90     43    122    114
D22V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             90
  CLUS_2            0             43
  CLUS_3            5            122
  CLUS_4            5            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        3      1      2      2      0      5
  PTEN WILD-TYPE     71     46     86     63     27     76
D22V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             71
  CLUS_2            1             46
  CLUS_3            2             86
  CLUS_4            2             63
  CLUS_5            0             27
  CLUS_6            5             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = C3ORF70 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF70 MUTATED        8      4      3      2
  C3ORF70 WILD-TYPE    154    133     56     32
D23V1, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               8               154
  CLUS_2               4               133
  CLUS_3               3                56
  CLUS_4               2                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF70 MUTATED        7      7      0      3
  C3ORF70 WILD-TYPE    128    105     69     76
D23V2, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               7               128
  CLUS_2               7               105
  CLUS_3               0                69
  CLUS_4               3                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF70 MUTATED        2      0      2      1      0
  C3ORF70 WILD-TYPE     35     29     34      4     20
D23V3, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                29
  CLUS_3               2                34
  CLUS_4               1                 4
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF70 MUTATED        2      1      1      1
  C3ORF70 WILD-TYPE     41     37     26     18
D23V4, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               2                41
  CLUS_2               1                37
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF70 MUTATED        5      7      5
  C3ORF70 WILD-TYPE    109    166     99
D23V5, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               5               109
  CLUS_2               7               166
  CLUS_3               5                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF70 MUTATED        3      5      9
  C3ORF70 WILD-TYPE    113    101    160
D23V6, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               3               113
  CLUS_2               5               101
  CLUS_3               9               160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF70 MUTATED        5      3      9
  C3ORF70 WILD-TYPE    114     93    168
D23V7, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               5               114
  CLUS_2               3                93
  CLUS_3               9               168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF70 MUTATED        5      4      3      1      4
  C3ORF70 WILD-TYPE     81     95     86     64     49
D23V8, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               5                81
  CLUS_2               4                95
  CLUS_3               3                86
  CLUS_4               1                64
  CLUS_5               4                49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF70 MUTATED        5      1      4      6
  C3ORF70 WILD-TYPE     88     42    123    113
D23V9, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               5                88
  CLUS_2               1                42
  CLUS_3               4               123
  CLUS_4               6               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C3ORF70 MUTATED        3      2      4      4      0      3
  C3ORF70 WILD-TYPE     71     45     84     61     27     78
D23V10, multiclass
        clus
vv       C3ORF70 MUTATED C3ORF70 WILD-TYPE
  CLUS_1               3                71
  CLUS_2               2                45
  CLUS_3               4                84
  CLUS_4               4                61
  CLUS_5               0                27
  CLUS_6               3                78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        7      9      3      2
  RBM10 WILD-TYPE    155    128     56     32
D24V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             7             155
  CLUS_2             9             128
  CLUS_3             3              56
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED       10      8      3      1
  RBM10 WILD-TYPE    125    104     66     78
D24V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1            10             125
  CLUS_2             8             104
  CLUS_3             3              66
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        1      1      4      0      0
  RBM10 WILD-TYPE     36     28     32      5     20
D24V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              28
  CLUS_3             4              32
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        3      2      1      0
  RBM10 WILD-TYPE     40     36     26     19
D24V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             2              36
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        5      9      8
  RBM10 WILD-TYPE    109    164     96
D24V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5             109
  CLUS_2             9             164
  CLUS_3             8              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        6      7      9
  RBM10 WILD-TYPE    110     99    160
D24V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             6             110
  CLUS_2             7              99
  CLUS_3             9             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        5      8      9
  RBM10 WILD-TYPE    114     88    168
D24V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5             114
  CLUS_2             8              88
  CLUS_3             9             168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        4      8      4      4      2
  RBM10 WILD-TYPE     82     91     85     61     51
D24V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             8              91
  CLUS_3             4              85
  CLUS_4             4              61
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        5      4      4      9
  RBM10 WILD-TYPE     88     39    123    110
D24V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              88
  CLUS_2             4              39
  CLUS_3             4             123
  CLUS_4             9             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM10 MUTATED        3      6      4      6      0      3
  RBM10 WILD-TYPE     71     41     84     59     27     78
D24V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             6              41
  CLUS_3             4              84
  CLUS_4             6              59
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = PSIP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        8     10      1      1
  PSIP1 WILD-TYPE    154    127     58     33
D25V1, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             8             154
  CLUS_2            10             127
  CLUS_3             1              58
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        3     12      2      3
  PSIP1 WILD-TYPE    132    100     67     76
D25V2, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             3             132
  CLUS_2            12             100
  CLUS_3             2              67
  CLUS_4             3              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSIP1 MUTATED        3      2      0      1      0
  PSIP1 WILD-TYPE     34     27     36      4     20
D25V3, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              27
  CLUS_3             0              36
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        4      2      0      0
  PSIP1 WILD-TYPE     39     36     27     19
D25V4, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             2              36
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        3     13      4
  PSIP1 WILD-TYPE    111    160    100
D25V5, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             3             111
  CLUS_2            13             160
  CLUS_3             4             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        5     11      4
  PSIP1 WILD-TYPE    111     95    165
D25V6, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2            11              95
  CLUS_3             4             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        2      4     14
  PSIP1 WILD-TYPE    117     92    163
D25V7, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             4              92
  CLUS_3            14             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSIP1 MUTATED        0      5      7      7      1
  PSIP1 WILD-TYPE     86     94     82     58     52
D25V8, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             5              94
  CLUS_3             7              82
  CLUS_4             7              58
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        1      1     12      6
  PSIP1 WILD-TYPE     92     42    115    113
D25V9, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             1              42
  CLUS_3            12             115
  CLUS_4             6             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSIP1 MUTATED        1      1      8      6      3      1
  PSIP1 WILD-TYPE     73     46     80     59     24     80
D25V10, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             1              46
  CLUS_3             8              80
  CLUS_4             6              59
  CLUS_5             3              24
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = ASXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED       14     18      3      1
  ASXL2 WILD-TYPE    148    119     56     33
D26V1, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1            14             148
  CLUS_2            18             119
  CLUS_3             3              56
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED       10     14      6      6
  ASXL2 WILD-TYPE    125     98     63     73
D26V2, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1            10             125
  CLUS_2            14              98
  CLUS_3             6              63
  CLUS_4             6              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        4      1      3      1      0
  ASXL2 WILD-TYPE     33     28     33      4     20
D26V3, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              28
  CLUS_3             3              33
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        4      2      3      0
  ASXL2 WILD-TYPE     39     36     24     19
D26V4, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             2              36
  CLUS_3             3              24
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED       11     13     11
  ASXL2 WILD-TYPE    103    160     93
D26V5, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1            11             103
  CLUS_2            13             160
  CLUS_3            11              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED       13      8     14
  ASXL2 WILD-TYPE    103     98    155
D26V6, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1            13             103
  CLUS_2             8              98
  CLUS_3            14             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED       11     12     13
  ASXL2 WILD-TYPE    108     84    164
D26V7, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1            11             108
  CLUS_2            12              84
  CLUS_3            13             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        7     12      8      3      6
  ASXL2 WILD-TYPE     79     87     81     62     47
D26V8, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             7              79
  CLUS_2            12              87
  CLUS_3             8              81
  CLUS_4             3              62
  CLUS_5             6              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        7      7     10     11
  ASXL2 WILD-TYPE     86     36    117    108
D26V9, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             7              86
  CLUS_2             7              36
  CLUS_3            10             117
  CLUS_4            11             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASXL2 MUTATED        6      6      7      8      3      5
  ASXL2 WILD-TYPE     68     41     81     57     24     76
D26V10, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             6              68
  CLUS_2             6              41
  CLUS_3             7              81
  CLUS_4             8              57
  CLUS_5             3              24
  CLUS_6             5              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       29     15      4      2
  FAT1 WILD-TYPE    133    122     55     32
D27V1, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           29            133
  CLUS_2           15            122
  CLUS_3            4             55
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       23     14      3     10
  FAT1 WILD-TYPE    112     98     66     69
D27V2, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           23            112
  CLUS_2           14             98
  CLUS_3            3             66
  CLUS_4           10             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        3      3      6      2      2
  FAT1 WILD-TYPE     34     26     30      3     18
D27V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            3             26
  CLUS_3            6             30
  CLUS_4            2              3
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        4      5      5      2
  FAT1 WILD-TYPE     39     33     22     17
D27V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             39
  CLUS_2            5             33
  CLUS_3            5             22
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       15     18     15
  FAT1 WILD-TYPE     99    155     89
D27V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           15             99
  CLUS_2           18            155
  CLUS_3           15             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        9     14     25
  FAT1 WILD-TYPE    107     92    144
D27V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            9            107
  CLUS_2           14             92
  CLUS_3           25            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       20      7     23
  FAT1 WILD-TYPE     99     89    154
D27V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           20             99
  CLUS_2            7             89
  CLUS_3           23            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED       15     10     10      8      7
  FAT1 WILD-TYPE     71     89     79     57     46
D27V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           15             71
  CLUS_2           10             89
  CLUS_3           10             79
  CLUS_4            8             57
  CLUS_5            7             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       16      2     18     13
  FAT1 WILD-TYPE     77     41    109    106
D27V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             77
  CLUS_2            2             41
  CLUS_3           18            109
  CLUS_4           13            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAT1 MUTATED        8      1     16      7      4     13
  FAT1 WILD-TYPE     66     46     72     58     23     68
D27V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            8             66
  CLUS_2            1             46
  CLUS_3           16             72
  CLUS_4            7             58
  CLUS_5            4             23
  CLUS_6           13             68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = SPTAN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED       24     13      5      2
  SPTAN1 WILD-TYPE    138    124     54     32
D28V1, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1             24              138
  CLUS_2             13              124
  CLUS_3              5               54
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED       10     17      7     11
  SPTAN1 WILD-TYPE    125     95     62     68
D28V2, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1             10              125
  CLUS_2             17               95
  CLUS_3              7               62
  CLUS_4             11               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        5      4      4      1      2
  SPTAN1 WILD-TYPE     32     25     32      4     18
D28V3, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              5               32
  CLUS_2              4               25
  CLUS_3              4               32
  CLUS_4              1                4
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        9      5      1      1
  SPTAN1 WILD-TYPE     34     33     26     18
D28V4, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              9               34
  CLUS_2              5               33
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED       12     25      8
  SPTAN1 WILD-TYPE    102    148     96
D28V5, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1             12              102
  CLUS_2             25              148
  CLUS_3              8               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED       16     15     14
  SPTAN1 WILD-TYPE    100     91    155
D28V6, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1             16              100
  CLUS_2             15               91
  CLUS_3             14              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        9     14     22
  SPTAN1 WILD-TYPE    110     82    155
D28V7, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              9              110
  CLUS_2             14               82
  CLUS_3             22              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        4     13     16      7      5
  SPTAN1 WILD-TYPE     82     86     73     58     48
D28V8, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              4               82
  CLUS_2             13               86
  CLUS_3             16               73
  CLUS_4              7               58
  CLUS_5              5               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        6      2     22     15
  SPTAN1 WILD-TYPE     87     41    105    104
D28V9, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              6               87
  CLUS_2              2               41
  CLUS_3             22              105
  CLUS_4             15              104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTAN1 MUTATED        8      4     12      8      8      5
  SPTAN1 WILD-TYPE     66     43     76     57     19     76
D28V10, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              8               66
  CLUS_2              4               43
  CLUS_3             12               76
  CLUS_4              8               57
  CLUS_5              8               19
  CLUS_6              5               76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = ZBTB7B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7B MUTATED        5      1      4      1
  ZBTB7B WILD-TYPE    157    136     55     33
D29V1, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              5              157
  CLUS_2              1              136
  CLUS_3              4               55
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7B MUTATED        4      4      2      1
  ZBTB7B WILD-TYPE    131    108     67     78
D29V2, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              4              131
  CLUS_2              4              108
  CLUS_3              2               67
  CLUS_4              1               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7B MUTATED        0      2      2      0      0
  ZBTB7B WILD-TYPE     37     27     34      5     20
D29V3, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              0               37
  CLUS_2              2               27
  CLUS_3              2               34
  CLUS_4              0                5
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7B MUTATED        0      2      1      1
  ZBTB7B WILD-TYPE     43     36     26     18
D29V4, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              0               43
  CLUS_2              2               36
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7B MUTATED        2      7      2
  ZBTB7B WILD-TYPE    112    166    102
D29V5, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              2              112
  CLUS_2              7              166
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7B MUTATED        2      5      4
  ZBTB7B WILD-TYPE    114    101    165
D29V6, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              2              114
  CLUS_2              5              101
  CLUS_3              4              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7B MUTATED        5      3      3
  ZBTB7B WILD-TYPE    114     93    174
D29V7, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              5              114
  CLUS_2              3               93
  CLUS_3              3              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7B MUTATED        0      4      2      2      3
  ZBTB7B WILD-TYPE     86     95     87     63     50
D29V8, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              0               86
  CLUS_2              4               95
  CLUS_3              2               87
  CLUS_4              2               63
  CLUS_5              3               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7B MUTATED        2      2      2      5
  ZBTB7B WILD-TYPE     91     41    125    114
D29V9, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              2               91
  CLUS_2              2               41
  CLUS_3              2              125
  CLUS_4              5              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB7B MUTATED        5      2      0      0      2      2
  ZBTB7B WILD-TYPE     69     45     88     65     25     79
D29V10, multiclass
        clus
vv       ZBTB7B MUTATED ZBTB7B WILD-TYPE
  CLUS_1              5               69
  CLUS_2              2               45
  CLUS_3              0               88
  CLUS_4              0               65
  CLUS_5              2               25
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = CUL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        6      5      4      2
  CUL1 WILD-TYPE    156    132     55     32
D30V1, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            6            156
  CLUS_2            5            132
  CLUS_3            4             55
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        6      5      3      5
  CUL1 WILD-TYPE    129    107     66     74
D30V2, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            6            129
  CLUS_2            5            107
  CLUS_3            3             66
  CLUS_4            5             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        3      1      1      0      2
  CUL1 WILD-TYPE     34     28     35      5     18
D30V3, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            1             28
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        4      0      1      2
  CUL1 WILD-TYPE     39     38     26     17
D30V4, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            4             39
  CLUS_2            0             38
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL1 MUTATED        4      8      7
  CUL1 WILD-TYPE    110    165     97
D30V5, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            4            110
  CLUS_2            8            165
  CLUS_3            7             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL1 MUTATED        4      4     11
  CUL1 WILD-TYPE    112    102    158
D30V6, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            4            112
  CLUS_2            4            102
  CLUS_3           11            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL1 MUTATED        8      5      6
  CUL1 WILD-TYPE    111     91    171
D30V7, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            8            111
  CLUS_2            5             91
  CLUS_3            6            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        3      5      6      3      2
  CUL1 WILD-TYPE     83     94     83     62     51
D30V8, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            3             83
  CLUS_2            5             94
  CLUS_3            6             83
  CLUS_4            3             62
  CLUS_5            2             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        7      1      4      6
  CUL1 WILD-TYPE     86     42    123    113
D30V9, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            7             86
  CLUS_2            1             42
  CLUS_3            4            123
  CLUS_4            6            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL1 MUTATED        6      2      2      2      1      5
  CUL1 WILD-TYPE     68     45     86     63     26     76
D30V10, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            6             68
  CLUS_2            2             45
  CLUS_3            2             86
  CLUS_4            2             63
  CLUS_5            1             26
  CLUS_6            5             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = KLF5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED       12      4      3      4
  KLF5 WILD-TYPE    150    133     56     30
D31V1, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1           12            150
  CLUS_2            4            133
  CLUS_3            3             56
  CLUS_4            4             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        7      7      4      5
  KLF5 WILD-TYPE    128    105     65     74
D31V2, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            7            128
  CLUS_2            7            105
  CLUS_3            4             65
  CLUS_4            5             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF5 MUTATED        4      1      4      1      0
  KLF5 WILD-TYPE     33     28     32      4     20
D31V3, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            1             28
  CLUS_3            4             32
  CLUS_4            1              4
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        6      2      2      0
  KLF5 WILD-TYPE     37     36     25     19
D31V4, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6             37
  CLUS_2            2             36
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        7     12      4
  KLF5 WILD-TYPE    107    161    100
D31V5, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            7            107
  CLUS_2           12            161
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        6      8      9
  KLF5 WILD-TYPE    110     98    160
D31V6, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6            110
  CLUS_2            8             98
  CLUS_3            9            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        6      8      9
  KLF5 WILD-TYPE    113     88    168
D31V7, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6            113
  CLUS_2            8             88
  CLUS_3            9            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF5 MUTATED        1      8      4      5      5
  KLF5 WILD-TYPE     85     91     85     60     48
D31V8, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            8             91
  CLUS_3            4             85
  CLUS_4            5             60
  CLUS_5            5             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        1      6      7      8
  KLF5 WILD-TYPE     92     37    120    111
D31V9, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            1             92
  CLUS_2            6             37
  CLUS_3            7            120
  CLUS_4            8            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLF5 MUTATED        5      5      5      5      1      1
  KLF5 WILD-TYPE     69     42     83     60     26     80
D31V10, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            5             69
  CLUS_2            5             42
  CLUS_3            5             83
  CLUS_4            5             60
  CLUS_5            1             26
  CLUS_6            1             80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = RXRA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        7     15      1      1
  RXRA WILD-TYPE    155    122     58     33
D32V1, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            7            155
  CLUS_2           15            122
  CLUS_3            1             58
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        7     13      0      4
  RXRA WILD-TYPE    128     99     69     75
D32V2, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            7            128
  CLUS_2           13             99
  CLUS_3            0             69
  CLUS_4            4             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RXRA MUTATED        7      1      2      1      1
  RXRA WILD-TYPE     30     28     34      4     19
D32V3, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            7             30
  CLUS_2            1             28
  CLUS_3            2             34
  CLUS_4            1              4
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        5      4      1      2
  RXRA WILD-TYPE     38     34     26     17
D32V4, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5             38
  CLUS_2            4             34
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        5     13      6
  RXRA WILD-TYPE    109    160     98
D32V5, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5            109
  CLUS_2           13            160
  CLUS_3            6             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        5     10      9
  RXRA WILD-TYPE    111     96    160
D32V6, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5            111
  CLUS_2           10             96
  CLUS_3            9            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        6      9      9
  RXRA WILD-TYPE    113     87    168
D32V7, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            6            113
  CLUS_2            9             87
  CLUS_3            9            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RXRA MUTATED        4     10      1      6      3
  RXRA WILD-TYPE     82     89     88     59     50
D32V8, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4             82
  CLUS_2           10             89
  CLUS_3            1             88
  CLUS_4            6             59
  CLUS_5            3             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        4      5      9      6
  RXRA WILD-TYPE     89     38    118    113
D32V9, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4             89
  CLUS_2            5             38
  CLUS_3            9            118
  CLUS_4            6            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RXRA MUTATED        4      6      9      1      0      4
  RXRA WILD-TYPE     70     41     79     64     27     77
D32V10, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4             70
  CLUS_2            6             41
  CLUS_3            9             79
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = GNA13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA13 MUTATED        5      6      1      0
  GNA13 WILD-TYPE    157    131     58     34
D33V1, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             5             157
  CLUS_2             6             131
  CLUS_3             1              58
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA13 MUTATED        2      3      2      5
  GNA13 WILD-TYPE    133    109     67     74
D33V2, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             3             109
  CLUS_3             2              67
  CLUS_4             5              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNA13 MUTATED        2      0      2      0      1
  GNA13 WILD-TYPE     35     29     34      5     19
D33V3, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              29
  CLUS_3             2              34
  CLUS_4             0               5
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA13 MUTATED        2      2      1      0
  GNA13 WILD-TYPE     41     36     26     19
D33V4, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             2              36
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA13 MUTATED        7      4      1
  GNA13 WILD-TYPE    107    169    103
D33V5, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             7             107
  CLUS_2             4             169
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA13 MUTATED        6      2      4
  GNA13 WILD-TYPE    110    104    165
D33V6, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             6             110
  CLUS_2             2             104
  CLUS_3             4             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA13 MUTATED        3      4      4
  GNA13 WILD-TYPE    116     92    173
D33V7, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             4              92
  CLUS_3             4             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNA13 MUTATED        2      4      2      0      3
  GNA13 WILD-TYPE     84     95     87     65     50
D33V8, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             4              95
  CLUS_3             2              87
  CLUS_4             0              65
  CLUS_5             3              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA13 MUTATED        0      1      3      7
  GNA13 WILD-TYPE     93     42    124    112
D33V9, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             0              93
  CLUS_2             1              42
  CLUS_3             3             124
  CLUS_4             7             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNA13 MUTATED        3      1      3      3      0      1
  GNA13 WILD-TYPE     71     46     85     62     27     80
D33V10, multiclass
        clus
vv       GNA13 MUTATED GNA13 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             1              46
  CLUS_3             3              85
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = METTL3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL3 MUTATED        5      8      1      3
  METTL3 WILD-TYPE    157    129     58     31
D34V1, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              5              157
  CLUS_2              8              129
  CLUS_3              1               58
  CLUS_4              3               31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL3 MUTATED        4      7      3      3
  METTL3 WILD-TYPE    131    105     66     76
D34V2, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              4              131
  CLUS_2              7              105
  CLUS_3              3               66
  CLUS_4              3               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL3 MUTATED        1      0      0      0      0
  METTL3 WILD-TYPE     36     29     36      5     20
D34V3, multiclass
[1] "Remove cluster labels:" "METTL3 MUTATED"        
clus
  METTL3 MUTATED METTL3 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AD       TCGA-DK-A1AE 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL3 MUTATED        0      0      1      0
  METTL3 WILD-TYPE     43     38     26     19
D34V4, multiclass
[1] "Remove cluster labels:" "METTL3 MUTATED"        
clus
  METTL3 MUTATED METTL3 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AD       TCGA-DK-A1AE 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"METTL3 WILD-TYPE" "METTL3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL3 MUTATED        5     10      2
  METTL3 WILD-TYPE    109    163    102
D34V5, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              5              109
  CLUS_2             10              163
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL3 MUTATED        7      6      4
  METTL3 WILD-TYPE    109    100    165
D34V6, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              7              109
  CLUS_2              6              100
  CLUS_3              4              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL3 MUTATED        4      2     11
  METTL3 WILD-TYPE    115     94    166
D34V7, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              4              115
  CLUS_2              2               94
  CLUS_3             11              166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL3 MUTATED        2      1      4      7      3
  METTL3 WILD-TYPE     84     98     85     58     50
D34V8, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              1               98
  CLUS_3              4               85
  CLUS_4              7               58
  CLUS_5              3               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL3 MUTATED        2      1      7      6
  METTL3 WILD-TYPE     91     42    120    113
D34V9, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              2               91
  CLUS_2              1               42
  CLUS_3              7              120
  CLUS_4              6              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  METTL3 MUTATED        2      1      7      4      1      1
  METTL3 WILD-TYPE     72     46     81     61     26     80
D34V10, multiclass
        clus
vv       METTL3 MUTATED METTL3 WILD-TYPE
  CLUS_1              2               72
  CLUS_2              1               46
  CLUS_3              7               81
  CLUS_4              4               61
  CLUS_5              1               26
  CLUS_6              1               80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = ERBB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED       12     19      6      4
  ERBB3 WILD-TYPE    150    118     53     30
D35V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            12             150
  CLUS_2            19             118
  CLUS_3             6              53
  CLUS_4             4              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED       10     15      6     10
  ERBB3 WILD-TYPE    125     97     63     69
D35V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            10             125
  CLUS_2            15              97
  CLUS_3             6              63
  CLUS_4            10              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        6      3      3      1      1
  ERBB3 WILD-TYPE     31     26     33      4     19
D35V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              31
  CLUS_2             3              26
  CLUS_3             3              33
  CLUS_4             1               4
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        6      6      1      1
  ERBB3 WILD-TYPE     37     32     26     18
D35V4, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              37
  CLUS_2             6              32
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        8     21     11
  ERBB3 WILD-TYPE    106    152     93
D35V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             8             106
  CLUS_2            21             152
  CLUS_3            11              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        8     15     17
  ERBB3 WILD-TYPE    108     91    152
D35V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             8             108
  CLUS_2            15              91
  CLUS_3            17             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       13      8     20
  ERBB3 WILD-TYPE    106     88    157
D35V7, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            13             106
  CLUS_2             8              88
  CLUS_3            20             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED       11     10      9      5      6
  ERBB3 WILD-TYPE     75     89     80     60     47
D35V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            11              75
  CLUS_2            10              89
  CLUS_3             9              80
  CLUS_4             5              60
  CLUS_5             6              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        9      3     14     14
  ERBB3 WILD-TYPE     84     40    113    105
D35V9, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             9              84
  CLUS_2             3              40
  CLUS_3            14             113
  CLUS_4            14             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB3 MUTATED        9      3     11      4      3     10
  ERBB3 WILD-TYPE     65     44     77     61     24     71
D35V10, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             9              65
  CLUS_2             3              44
  CLUS_3            11              77
  CLUS_4             4              61
  CLUS_5             3              24
  CLUS_6            10              71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = RUNX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        2     10      2      0
  RUNX1 WILD-TYPE    160    127     57     34
D36V1, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             2             160
  CLUS_2            10             127
  CLUS_3             2              57
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        4      6      3      1
  RUNX1 WILD-TYPE    131    106     66     78
D36V2, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             4             131
  CLUS_2             6             106
  CLUS_3             3              66
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1 MUTATED        1      1      1      0      0
  RUNX1 WILD-TYPE     36     28     35      5     20
D36V3, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              28
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        0      1      2      0
  RUNX1 WILD-TYPE     43     37     25     19
D36V4, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             0              43
  CLUS_2             1              37
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED        6      3      5
  RUNX1 WILD-TYPE    108    170     99
D36V5, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             6             108
  CLUS_2             3             170
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED        5      1      8
  RUNX1 WILD-TYPE    111    105    161
D36V6, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             1             105
  CLUS_3             8             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED        3      2      8
  RUNX1 WILD-TYPE    116     94    169
D36V7, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             2              94
  CLUS_3             8             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX1 MUTATED        4      2      2      3      2
  RUNX1 WILD-TYPE     82     97     87     62     51
D36V8, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             2              97
  CLUS_3             2              87
  CLUS_4             3              62
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        4      1      5      3
  RUNX1 WILD-TYPE     89     42    122    116
D36V9, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             4              89
  CLUS_2             1              42
  CLUS_3             5             122
  CLUS_4             3             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUNX1 MUTATED        1      1      3      4      0      4
  RUNX1 WILD-TYPE     73     46     85     61     27     77
D36V10, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             1              46
  CLUS_3             3              85
  CLUS_4             4              61
  CLUS_5             0              27
  CLUS_6             4              77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = MBD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD1 MUTATED        2      5      4      2
  MBD1 WILD-TYPE    160    132     55     32
D37V1, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2            160
  CLUS_2            5            132
  CLUS_3            4             55
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD1 MUTATED        4      4      2      3
  MBD1 WILD-TYPE    131    108     67     76
D37V2, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            4            131
  CLUS_2            4            108
  CLUS_3            2             67
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD1 MUTATED        1      1      3      0      1
  MBD1 WILD-TYPE     36     28     33      5     19
D37V3, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             28
  CLUS_3            3             33
  CLUS_4            0              5
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD1 MUTATED        1      2      2      1
  MBD1 WILD-TYPE     42     36     25     18
D37V4, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            1             42
  CLUS_2            2             36
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD1 MUTATED        5      4      4
  MBD1 WILD-TYPE    109    169    100
D37V5, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            5            109
  CLUS_2            4            169
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD1 MUTATED        2      4      7
  MBD1 WILD-TYPE    114    102    162
D37V6, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2            114
  CLUS_2            4            102
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD1 MUTATED        3      1      8
  MBD1 WILD-TYPE    116     95    169
D37V7, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3            116
  CLUS_2            1             95
  CLUS_3            8            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD1 MUTATED        3      1      3      2      3
  MBD1 WILD-TYPE     83     98     86     63     50
D37V8, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3             83
  CLUS_2            1             98
  CLUS_3            3             86
  CLUS_4            2             63
  CLUS_5            3             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD1 MUTATED        5      1      3      2
  MBD1 WILD-TYPE     88     42    124    117
D37V9, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            5             88
  CLUS_2            1             42
  CLUS_3            3            124
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD1 MUTATED        3      1      3      0      0      4
  MBD1 WILD-TYPE     71     46     85     65     27     77
D37V10, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3             71
  CLUS_2            1             46
  CLUS_3            3             85
  CLUS_4            0             65
  CLUS_5            0             27
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = FOXQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        6      7      1      0
  FOXQ1 WILD-TYPE    156    130     58     34
D38V1, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             6             156
  CLUS_2             7             130
  CLUS_3             1              58
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        5      5      3      1
  FOXQ1 WILD-TYPE    130    107     66     78
D38V2, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             5             130
  CLUS_2             5             107
  CLUS_3             3              66
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        2      0      2      0      2
  FOXQ1 WILD-TYPE     35     29     34      5     18
D38V3, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              29
  CLUS_3             2              34
  CLUS_4             0               5
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        3      1      0      2
  FOXQ1 WILD-TYPE     40     37     27     17
D38V4, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              37
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      9      3
  FOXQ1 WILD-TYPE    112    164    101
D38V5, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             9             164
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        5      3      6
  FOXQ1 WILD-TYPE    111    103    163
D38V6, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             3             103
  CLUS_3             6             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        3      3      7
  FOXQ1 WILD-TYPE    116     93    170
D38V7, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             3              93
  CLUS_3             7             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        3      2      4      2      2
  FOXQ1 WILD-TYPE     83     97     85     63     51
D38V8, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             2              97
  CLUS_3             4              85
  CLUS_4             2              63
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        3      2      4      4
  FOXQ1 WILD-TYPE     90     41    123    115
D38V9, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              90
  CLUS_2             2              41
  CLUS_3             4             123
  CLUS_4             4             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXQ1 MUTATED        3      2      3      2      0      3
  FOXQ1 WILD-TYPE     71     45     85     63     27     78
D38V10, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             2              45
  CLUS_3             3              85
  CLUS_4             2              63
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = RPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        5      7      2      1
  RPTN WILD-TYPE    157    130     57     33
D39V1, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            5            157
  CLUS_2            7            130
  CLUS_3            2             57
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        6      5      2      2
  RPTN WILD-TYPE    129    107     67     77
D39V2, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            6            129
  CLUS_2            5            107
  CLUS_3            2             67
  CLUS_4            2             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        1      1      0      0      3
  RPTN WILD-TYPE     36     28     36      5     17
D39V3, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             28
  CLUS_3            0             36
  CLUS_4            0              5
  CLUS_5            3             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        2      1      0      2
  RPTN WILD-TYPE     41     37     27     17
D39V4, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2             41
  CLUS_2            1             37
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        4      7      4
  RPTN WILD-TYPE    110    166    100
D39V5, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4            110
  CLUS_2            7            166
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        4      4      7
  RPTN WILD-TYPE    112    102    162
D39V6, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4            112
  CLUS_2            4            102
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        4      5      6
  RPTN WILD-TYPE    115     91    171
D39V7, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4            115
  CLUS_2            5             91
  CLUS_3            6            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        3      8      3      0      1
  RPTN WILD-TYPE     83     91     86     65     52
D39V8, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3             83
  CLUS_2            8             91
  CLUS_3            3             86
  CLUS_4            0             65
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        5      1      5      4
  RPTN WILD-TYPE     88     42    122    115
D39V9, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            5             88
  CLUS_2            1             42
  CLUS_3            5            122
  CLUS_4            4            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPTN MUTATED        4      1      4      1      0      5
  RPTN WILD-TYPE     70     46     84     64     27     76
D39V10, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4             70
  CLUS_2            1             46
  CLUS_3            4             84
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            5             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = SF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        2      8      0      0
  SF1 WILD-TYPE    160    129     59     34
D40V1, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           2           160
  CLUS_2           8           129
  CLUS_3           0            59
  CLUS_4           0            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        3      3      3      1
  SF1 WILD-TYPE    132    109     66     78
D40V2, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           3           132
  CLUS_2           3           109
  CLUS_3           3            66
  CLUS_4           1            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF1 MUTATED        1      1      1      0      0
  SF1 WILD-TYPE     36     28     35      5     20
D40V3, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           1            36
  CLUS_2           1            28
  CLUS_3           1            35
  CLUS_4           0             5
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        0      1      2      0
  SF1 WILD-TYPE     43     37     25     19
D40V4, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           0            43
  CLUS_2           1            37
  CLUS_3           2            25
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        4      4      2
  SF1 WILD-TYPE    110    169    102
D40V5, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           4           110
  CLUS_2           4           169
  CLUS_3           2           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        3      3      4
  SF1 WILD-TYPE    113    103    165
D40V6, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           3           113
  CLUS_2           3           103
  CLUS_3           4           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        0      6      4
  SF1 WILD-TYPE    119     90    173
D40V7, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           0           119
  CLUS_2           6            90
  CLUS_3           4           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF1 MUTATED        1      6      2      1      0
  SF1 WILD-TYPE     85     93     87     64     53
D40V8, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           1            85
  CLUS_2           6            93
  CLUS_3           2            87
  CLUS_4           1            64
  CLUS_5           0            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        2      3      4      1
  SF1 WILD-TYPE     91     40    123    118
D40V9, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           2            91
  CLUS_2           3            40
  CLUS_3           4           123
  CLUS_4           1           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF1 MUTATED        0      4      1      0      1      4
  SF1 WILD-TYPE     74     43     87     65     26     77
D40V10, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           0            74
  CLUS_2           4            43
  CLUS_3           1            87
  CLUS_4           0            65
  CLUS_5           1            26
  CLUS_6           4            77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DNAH6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        6      8      1      1
  DNAH6 WILD-TYPE    156    129     58     33
D41V1, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             6             156
  CLUS_2             8             129
  CLUS_3             1              58
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        3      7      5      1
  DNAH6 WILD-TYPE    132    105     64     78
D41V2, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             7             105
  CLUS_3             5              64
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH6 MUTATED        1      2      0      0      1
  DNAH6 WILD-TYPE     36     27     36      5     19
D41V3, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              27
  CLUS_3             0              36
  CLUS_4             0               5
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        1      2      0      1
  DNAH6 WILD-TYPE     42     36     27     18
D41V4, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             2              36
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED        4     12      0
  DNAH6 WILD-TYPE    110    161    104
D41V5, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             4             110
  CLUS_2            12             161
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED        5      9      2
  DNAH6 WILD-TYPE    111     97    167
D41V6, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             9              97
  CLUS_3             2             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED        5      4      7
  DNAH6 WILD-TYPE    114     92    170
D41V7, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             5             114
  CLUS_2             4              92
  CLUS_3             7             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH6 MUTATED        0      5      2      5      4
  DNAH6 WILD-TYPE     86     94     87     60     49
D41V8, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             5              94
  CLUS_3             2              87
  CLUS_4             5              60
  CLUS_5             4              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        0      2      8      5
  DNAH6 WILD-TYPE     93     41    119    114
D41V9, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             0              93
  CLUS_2             2              41
  CLUS_3             8             119
  CLUS_4             5             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH6 MUTATED        5      2      6      0      2      0
  DNAH6 WILD-TYPE     69     45     82     65     25     81
D41V10, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             5              69
  CLUS_2             2              45
  CLUS_3             6              82
  CLUS_4             0              65
  CLUS_5             2              25
  CLUS_6             0              81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = ZNF185 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        1      1      1      2
  ZNF185 WILD-TYPE    161    136     58     32
D42V1, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              1              161
  CLUS_2              1              136
  CLUS_3              1               58
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        1      2      0      2
  ZNF185 WILD-TYPE    134    110     69     77
D42V2, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              2              110
  CLUS_3              0               69
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        0      0      2      0      0
  ZNF185 WILD-TYPE     37     29     34      5     20
D42V3, multiclass
[1] "Remove cluster labels:" "ZNF185 MUTATED"        
clus
  ZNF185 MUTATED ZNF185 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A2EC       TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A2EL       TCGA-G2-A2EO       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3WC       TCGA-GC-A3YS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-K4-A3WV 
"ZNF185 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        0      1      1      0
  ZNF185 WILD-TYPE     43     37     26     19
D42V4, multiclass
[1] "Remove cluster labels:" "ZNF185 MUTATED"        
clus
  ZNF185 MUTATED ZNF185 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A2EC       TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A2EL       TCGA-G2-A2EO       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3WC       TCGA-GC-A3YS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" "ZNF185 WILD-TYPE" 
      TCGA-K4-A3WV 
"ZNF185 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF185 MUTATED        2      1      2
  ZNF185 WILD-TYPE    112    172    102
D42V5, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              2              112
  CLUS_2              1              172
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF185 MUTATED        1      1      3
  ZNF185 WILD-TYPE    115    105    166
D42V6, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              1              105
  CLUS_3              3              166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF185 MUTATED        1      0      4
  ZNF185 WILD-TYPE    118     96    173
D42V7, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              1              118
  CLUS_2              0               96
  CLUS_3              4              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF185 MUTATED        3      0      1      0      1
  ZNF185 WILD-TYPE     83     99     88     65     52
D42V8, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              3               83
  CLUS_2              0               99
  CLUS_3              1               88
  CLUS_4              0               65
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF185 MUTATED        2      0      1      1
  ZNF185 WILD-TYPE     91     43    126    118
D42V9, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              2               91
  CLUS_2              0               43
  CLUS_3              1              126
  CLUS_4              1              118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF185 MUTATED        0      0      1      1      0      2
  ZNF185 WILD-TYPE     74     47     87     64     27     79
D42V10, multiclass
        clus
vv       ZNF185 MUTATED ZNF185 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              0               47
  CLUS_3              1               87
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       25     15      7      6
  ATM WILD-TYPE    137    122     52     28
D43V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          25           137
  CLUS_2          15           122
  CLUS_3           7            52
  CLUS_4           6            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       21     16      8      8
  ATM WILD-TYPE    114     96     61     71
D43V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          21           114
  CLUS_2          16            96
  CLUS_3           8            61
  CLUS_4           8            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        2      3      3      1      5
  ATM WILD-TYPE     35     26     33      4     15
D43V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            35
  CLUS_2           3            26
  CLUS_3           3            33
  CLUS_4           1             4
  CLUS_5           5            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        5      4      2      3
  ATM WILD-TYPE     38     34     25     16
D43V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5            38
  CLUS_2           4            34
  CLUS_3           2            25
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       14     27     12
  ATM WILD-TYPE    100    146     92
D43V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          14           100
  CLUS_2          27           146
  CLUS_3          12            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       17     16     20
  ATM WILD-TYPE     99     90    149
D43V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          17            99
  CLUS_2          16            90
  CLUS_3          20           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        9     16     27
  ATM WILD-TYPE    110     80    150
D43V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           9           110
  CLUS_2          16            80
  CLUS_3          27           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        8     16     11     13      4
  ATM WILD-TYPE     78     83     78     52     49
D43V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           8            78
  CLUS_2          16            83
  CLUS_3          11            78
  CLUS_4          13            52
  CLUS_5           4            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       15      7     20     10
  ATM WILD-TYPE     78     36    107    109
D43V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          15            78
  CLUS_2           7            36
  CLUS_3          20           107
  CLUS_4          10           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        6      8     17      5      5     11
  ATM WILD-TYPE     68     39     71     60     22     70
D43V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           6            68
  CLUS_2           8            39
  CLUS_3          17            71
  CLUS_4           5            60
  CLUS_5           5            22
  CLUS_6          11            70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = UNC93B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC93B1 MUTATED        1      3      2      1
  UNC93B1 WILD-TYPE    161    134     57     33
D44V1, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               1               161
  CLUS_2               3               134
  CLUS_3               2                57
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC93B1 MUTATED        3      2      1      1
  UNC93B1 WILD-TYPE    132    110     68     78
D44V2, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               3               132
  CLUS_2               2               110
  CLUS_3               1                68
  CLUS_4               1                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC93B1 MUTATED        1      1      0      0      0
  UNC93B1 WILD-TYPE     36     28     36      5     20
D44V3, multiclass
[1] "Remove cluster labels:" "UNC93B1 MUTATED"       
clus
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2               125 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB        TCGA-BT-A2LD 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A3PJ        TCGA-BT-A3PK        TCGA-BT-A42B        TCGA-BT-A42C 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F1        TCGA-C4-A0F6 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-C4-A0F7        TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CF-A3MF        TCGA-CF-A3MG        TCGA-CF-A3MH        TCGA-CF-A3MI 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CU-A0YN        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1AA 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A3IK        TCGA-DK-A3IL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ        TCGA-DK-A3IT 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3IU        TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-FD-A3B3        TCGA-FD-A3B4 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FJ-A3Z7 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-G2-A2EC        TCGA-G2-A2EF 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3WC        TCGA-GC-A3YS 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GU-A42R        TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JZ 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QH        TCGA-GV-A3QI 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-H4-A2HQ        TCGA-HQ-A2OE        TCGA-K4-A3WS        TCGA-K4-A3WU 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-K4-A3WV 
"UNC93B1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC93B1 MUTATED        1      1      0      0
  UNC93B1 WILD-TYPE     42     37     27     19
D44V4, multiclass
[1] "Remove cluster labels:" "UNC93B1 MUTATED"       
clus
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2               125 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB        TCGA-BT-A2LD 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BT-A3PJ        TCGA-BT-A3PK        TCGA-BT-A42B        TCGA-BT-A42C 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F1        TCGA-C4-A0F6 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-C4-A0F7        TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CF-A3MF        TCGA-CF-A3MG        TCGA-CF-A3MH        TCGA-CF-A3MI 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CU-A0YN        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1AA 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A3IK        TCGA-DK-A3IL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ        TCGA-DK-A3IT 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3IU        TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-FD-A3B3        TCGA-FD-A3B4 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SL 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FJ-A3Z7 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-G2-A2EC        TCGA-G2-A2EF 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3WC        TCGA-GC-A3YS 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GU-A42R        TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JZ 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QH        TCGA-GV-A3QI 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-H4-A2HQ        TCGA-HQ-A2OE        TCGA-K4-A3WS        TCGA-K4-A3WU 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-K4-A3WV 
"UNC93B1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UNC93B1 MUTATED        1      3      3
  UNC93B1 WILD-TYPE    113    170    101
D44V5, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               1               113
  CLUS_2               3               170
  CLUS_3               3               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UNC93B1 MUTATED        2      1      4
  UNC93B1 WILD-TYPE    114    105    165
D44V6, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               2               114
  CLUS_2               1               105
  CLUS_3               4               165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UNC93B1 MUTATED        3      1      3
  UNC93B1 WILD-TYPE    116     95    174
D44V7, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               3               116
  CLUS_2               1                95
  CLUS_3               3               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC93B1 MUTATED        2      1      2      1      1
  UNC93B1 WILD-TYPE     84     98     87     64     52
D44V8, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               1                98
  CLUS_3               2                87
  CLUS_4               1                64
  CLUS_5               1                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC93B1 MUTATED        3      0      2      2
  UNC93B1 WILD-TYPE     90     43    125    117
D44V9, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               3                90
  CLUS_2               0                43
  CLUS_3               2               125
  CLUS_4               2               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC93B1 MUTATED        1      1      2      0      0      3
  UNC93B1 WILD-TYPE     73     46     86     65     27     78
D44V10, multiclass
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  CLUS_1               1                73
  CLUS_2               1                46
  CLUS_3               2                86
  CLUS_4               0                65
  CLUS_5               0                27
  CLUS_6               3                78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = UBA52 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA52 MUTATED        4      1      1      1
  UBA52 WILD-TYPE    158    136     58     33
D45V1, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             4             158
  CLUS_2             1             136
  CLUS_3             1              58
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA52 MUTATED        1      3      1      2
  UBA52 WILD-TYPE    134    109     68     77
D45V2, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             3             109
  CLUS_3             1              68
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBA52 MUTATED        0      0      1      0      0
  UBA52 WILD-TYPE     37     29     35      5     20
D45V3, multiclass
[1] "Remove cluster labels:" "UBA52 MUTATED"         
clus
  UBA52 MUTATED UBA52 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3IL      TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3IT      TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3WX      TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A2EL      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA52 MUTATED        0      0      1      0
  UBA52 WILD-TYPE     43     38     26     19
D45V4, multiclass
[1] "Remove cluster labels:" "UBA52 MUTATED"         
clus
  UBA52 MUTATED UBA52 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3IL      TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3IT      TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-DK-A3WX      TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A2EL      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"UBA52 WILD-TYPE" "UBA52 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBA52 MUTATED        3      3      1
  UBA52 WILD-TYPE    111    170    103
D45V5, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             3             111
  CLUS_2             3             170
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBA52 MUTATED        4      2      1
  UBA52 WILD-TYPE    112    104    168
D45V6, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             4             112
  CLUS_2             2             104
  CLUS_3             1             168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBA52 MUTATED        2      0      5
  UBA52 WILD-TYPE    117     96    172
D45V7, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             0              96
  CLUS_3             5             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBA52 MUTATED        1      1      2      2      1
  UBA52 WILD-TYPE     85     98     87     63     52
D45V8, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             1              98
  CLUS_3             2              87
  CLUS_4             2              63
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA52 MUTATED        1      0      2      3
  UBA52 WILD-TYPE     92     43    125    116
D45V9, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             0              43
  CLUS_3             2             125
  CLUS_4             3             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBA52 MUTATED        1      0      2      2      0      1
  UBA52 WILD-TYPE     73     47     86     63     27     80
D45V10, multiclass
        clus
vv       UBA52 MUTATED UBA52 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             0              47
  CLUS_3             2              86
  CLUS_4             2              63
  CLUS_5             0              27
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = CNOT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT1 MUTATED        9      9      0      3
  CNOT1 WILD-TYPE    153    128     59     31
D46V1, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             9             153
  CLUS_2             9             128
  CLUS_3             0              59
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT1 MUTATED        5      9      3      4
  CNOT1 WILD-TYPE    130    103     66     75
D46V2, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             5             130
  CLUS_2             9             103
  CLUS_3             3              66
  CLUS_4             4              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT1 MUTATED        2      0      4      0      1
  CNOT1 WILD-TYPE     35     29     32      5     19
D46V3, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              29
  CLUS_3             4              32
  CLUS_4             0               5
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT1 MUTATED        3      1      2      1
  CNOT1 WILD-TYPE     40     37     25     18
D46V4, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              37
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT1 MUTATED        4     11      5
  CNOT1 WILD-TYPE    110    162     99
D46V5, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             4             110
  CLUS_2            11             162
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT1 MUTATED        5      8      7
  CNOT1 WILD-TYPE    111     98    162
D46V6, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             8              98
  CLUS_3             7             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT1 MUTATED        4      6     11
  CNOT1 WILD-TYPE    115     90    166
D46V7, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             4             115
  CLUS_2             6              90
  CLUS_3            11             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT1 MUTATED        4      5      4      6      2
  CNOT1 WILD-TYPE     82     94     85     59     51
D46V8, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             5              94
  CLUS_3             4              85
  CLUS_4             6              59
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT1 MUTATED        4      2      8      6
  CNOT1 WILD-TYPE     89     41    119    113
D46V9, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             4              89
  CLUS_2             2              41
  CLUS_3             8             119
  CLUS_4             6             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNOT1 MUTATED        3      3      5      3      2      4
  CNOT1 WILD-TYPE     71     44     83     62     25     77
D46V10, multiclass
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             3              44
  CLUS_3             5              83
  CLUS_4             3              62
  CLUS_5             2              25
  CLUS_6             4              77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = ERBB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED       17     16     11      4
  ERBB2 WILD-TYPE    145    121     48     30
D47V1, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            17             145
  CLUS_2            16             121
  CLUS_3            11              48
  CLUS_4             4              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED       18      9     10     11
  ERBB2 WILD-TYPE    117    103     59     68
D47V2, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            18             117
  CLUS_2             9             103
  CLUS_3            10              59
  CLUS_4            11              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        3      0      3      1      0
  ERBB2 WILD-TYPE     34     29     33      4     20
D47V3, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              29
  CLUS_3             3              33
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        4      1      2      0
  ERBB2 WILD-TYPE     39     37     25     19
D47V4, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             1              37
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       15     16     16
  ERBB2 WILD-TYPE     99    157     88
D47V5, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            15              99
  CLUS_2            16             157
  CLUS_3            16              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       10     11     26
  ERBB2 WILD-TYPE    106     95    143
D47V6, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            10             106
  CLUS_2            11              95
  CLUS_3            26             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       16     11     19
  ERBB2 WILD-TYPE    103     85    158
D47V7, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            16             103
  CLUS_2            11              85
  CLUS_3            19             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED       11     12     10      3     10
  ERBB2 WILD-TYPE     75     87     79     62     43
D47V8, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            11              75
  CLUS_2            12              87
  CLUS_3            10              79
  CLUS_4             3              62
  CLUS_5            10              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED       14      4      9     17
  ERBB2 WILD-TYPE     79     39    118    102
D47V9, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            14              79
  CLUS_2             4              39
  CLUS_3             9             118
  CLUS_4            17             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2 MUTATED        7      5      7     11      1     13
  ERBB2 WILD-TYPE     67     42     81     54     26     68
D47V10, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             7              67
  CLUS_2             5              42
  CLUS_3             7              81
  CLUS_4            11              54
  CLUS_5             1              26
  CLUS_6            13              68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        7      9      2      3
  FAM47C WILD-TYPE    155    128     57     31
D48V1, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7              155
  CLUS_2              9              128
  CLUS_3              2               57
  CLUS_4              3               31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        8      6      2      5
  FAM47C WILD-TYPE    127    106     67     74
D48V2, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8              127
  CLUS_2              6              106
  CLUS_3              2               67
  CLUS_4              5               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        0      1      5      0      3
  FAM47C WILD-TYPE     37     28     31      5     17
D48V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               28
  CLUS_3              5               31
  CLUS_4              0                5
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      2      4      2
  FAM47C WILD-TYPE     42     36     23     17
D48V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               42
  CLUS_2              2               36
  CLUS_3              4               23
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        4      8      9
  FAM47C WILD-TYPE    110    165     95
D48V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              4              110
  CLUS_2              8              165
  CLUS_3              9               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        7      4     10
  FAM47C WILD-TYPE    109    102    159
D48V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7              109
  CLUS_2              4              102
  CLUS_3             10              159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        7      2     12
  FAM47C WILD-TYPE    112     94    165
D48V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7              112
  CLUS_2              2               94
  CLUS_3             12              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        8      2      3      5      3
  FAM47C WILD-TYPE     78     97     86     60     50
D48V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              8               78
  CLUS_2              2               97
  CLUS_3              3               86
  CLUS_4              5               60
  CLUS_5              3               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        6      1      6      7
  FAM47C WILD-TYPE     87     42    121    112
D48V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              6               87
  CLUS_2              1               42
  CLUS_3              6              121
  CLUS_4              7              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM47C MUTATED        4      1      5      4      0      6
  FAM47C WILD-TYPE     70     46     83     61     27     75
D48V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              4               70
  CLUS_2              1               46
  CLUS_3              5               83
  CLUS_4              4               61
  CLUS_5              0               27
  CLUS_6              6               75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = SF3B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B1 MUTATED        7     13      4      0
  SF3B1 WILD-TYPE    155    124     55     34
D49V1, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             7             155
  CLUS_2            13             124
  CLUS_3             4              55
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B1 MUTATED        8      9      3      4
  SF3B1 WILD-TYPE    127    103     66     75
D49V2, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             8             127
  CLUS_2             9             103
  CLUS_3             3              66
  CLUS_4             4              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B1 MUTATED        3      0      3      1      1
  SF3B1 WILD-TYPE     34     29     33      4     19
D49V3, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              29
  CLUS_3             3              33
  CLUS_4             1               4
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B1 MUTATED        5      1      1      1
  SF3B1 WILD-TYPE     38     37     26     18
D49V4, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             5              38
  CLUS_2             1              37
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B1 MUTATED        7     12      5
  SF3B1 WILD-TYPE    107    161     99
D49V5, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             7             107
  CLUS_2            12             161
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B1 MUTATED        5      8     11
  SF3B1 WILD-TYPE    111     98    158
D49V6, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             8              98
  CLUS_3            11             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B1 MUTATED        7      6     10
  SF3B1 WILD-TYPE    112     90    167
D49V7, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             7             112
  CLUS_2             6              90
  CLUS_3            10             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B1 MUTATED        4      6      6      3      4
  SF3B1 WILD-TYPE     82     93     83     62     49
D49V8, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             6              93
  CLUS_3             6              83
  CLUS_4             3              62
  CLUS_5             4              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B1 MUTATED        2      4      7      9
  SF3B1 WILD-TYPE     91     39    120    110
D49V9, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             2              91
  CLUS_2             4              39
  CLUS_3             7             120
  CLUS_4             9             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B1 MUTATED        3      4      5      7      1      2
  SF3B1 WILD-TYPE     71     43     83     58     26     79
D49V10, multiclass
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             4              43
  CLUS_3             5              83
  CLUS_4             7              58
  CLUS_5             1              26
  CLUS_6             2              79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = EPS8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8 MUTATED        2      7      3      2
  EPS8 WILD-TYPE    160    130     56     32
D50V1, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            2            160
  CLUS_2            7            130
  CLUS_3            3             56
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8 MUTATED        5      6      2      1
  EPS8 WILD-TYPE    130    106     67     78
D50V2, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            5            130
  CLUS_2            6            106
  CLUS_3            2             67
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8 MUTATED        0      1      1      0      0
  EPS8 WILD-TYPE     37     28     35      5     20
D50V3, multiclass
[1] "Remove cluster labels:" "EPS8 MUTATED"          
clus
  EPS8 MUTATED EPS8 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A42C     TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-C4-A0F6     TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A27C 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-K4-A3WV 
"EPS8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8 MUTATED        0      1      1      0
  EPS8 WILD-TYPE     43     37     26     19
D50V4, multiclass
[1] "Remove cluster labels:" "EPS8 MUTATED"          
clus
  EPS8 MUTATED EPS8 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-BT-A42C     TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-C4-A0F6     TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A27C 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" "EPS8 WILD-TYPE" 
    TCGA-K4-A3WV 
"EPS8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPS8 MUTATED        5      5      4
  EPS8 WILD-TYPE    109    168    100
D50V5, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            5            109
  CLUS_2            5            168
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPS8 MUTATED        4      3      7
  EPS8 WILD-TYPE    112    103    162
D50V6, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            4            112
  CLUS_2            3            103
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPS8 MUTATED        8      2      3
  EPS8 WILD-TYPE    111     94    174
D50V7, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            8            111
  CLUS_2            2             94
  CLUS_3            3            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS8 MUTATED        4      2      2      2      3
  EPS8 WILD-TYPE     82     97     87     63     50
D50V8, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            4             82
  CLUS_2            2             97
  CLUS_3            2             87
  CLUS_4            2             63
  CLUS_5            3             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS8 MUTATED        3      0      2      7
  EPS8 WILD-TYPE     90     43    125    112
D50V9, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            3             90
  CLUS_2            0             43
  CLUS_3            2            125
  CLUS_4            7            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPS8 MUTATED        4      0      1      4      0      3
  EPS8 WILD-TYPE     70     47     87     61     27     78
D50V10, multiclass
        clus
vv       EPS8 MUTATED EPS8 WILD-TYPE
  CLUS_1            4             70
  CLUS_2            0             47
  CLUS_3            1             87
  CLUS_4            4             61
  CLUS_5            0             27
  CLUS_6            3             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        7      8      2      2
  EPHA2 WILD-TYPE    155    129     57     32
D51V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7             155
  CLUS_2             8             129
  CLUS_3             2              57
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        4     10      0      5
  EPHA2 WILD-TYPE    131    102     69     74
D51V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4             131
  CLUS_2            10             102
  CLUS_3             0              69
  CLUS_4             5              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        2      1      2      1      0
  EPHA2 WILD-TYPE     35     28     34      4     20
D51V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              28
  CLUS_3             2              34
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        3      1      1      1
  EPHA2 WILD-TYPE     40     37     26     18
D51V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              37
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        2      9      7
  EPHA2 WILD-TYPE    112    164     97
D51V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             9             164
  CLUS_3             7              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        5      5      8
  EPHA2 WILD-TYPE    111    101    161
D51V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             5             101
  CLUS_3             8             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        7      6      6
  EPHA2 WILD-TYPE    112     90    171
D51V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7             112
  CLUS_2             6              90
  CLUS_3             6             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        5      7      1      5      1
  EPHA2 WILD-TYPE     81     92     88     60     52
D51V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              81
  CLUS_2             7              92
  CLUS_3             1              88
  CLUS_4             5              60
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        7      2      6      4
  EPHA2 WILD-TYPE     86     41    121    115
D51V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7              86
  CLUS_2             2              41
  CLUS_3             6             121
  CLUS_4             4             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA2 MUTATED        1      3      5      2      1      7
  EPHA2 WILD-TYPE     73     44     83     63     26     74
D51V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             3              44
  CLUS_3             5              83
  CLUS_4             2              63
  CLUS_5             1              26
  CLUS_6             7              74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = OGDH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED        4     10      5      0
  OGDH WILD-TYPE    158    127     54     34
D52V1, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            4            158
  CLUS_2           10            127
  CLUS_3            5             54
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED       10      5      3      1
  OGDH WILD-TYPE    125    107     66     78
D52V2, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1           10            125
  CLUS_2            5            107
  CLUS_3            3             66
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGDH MUTATED        1      0      1      1      0
  OGDH WILD-TYPE     36     29     35      4     20
D52V3, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            1              4
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED        2      0      0      1
  OGDH WILD-TYPE     41     38     27     18
D52V4, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             38
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        7      7      4
  OGDH WILD-TYPE    107    166    100
D52V5, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            7            107
  CLUS_2            7            166
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        5      4      9
  OGDH WILD-TYPE    111    102    160
D52V6, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            5            111
  CLUS_2            4            102
  CLUS_3            9            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        7      6      6
  OGDH WILD-TYPE    112     90    171
D52V7, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            7            112
  CLUS_2            6             90
  CLUS_3            6            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGDH MUTATED        5      6      1      3      4
  OGDH WILD-TYPE     81     93     88     62     49
D52V8, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            5             81
  CLUS_2            6             93
  CLUS_3            1             88
  CLUS_4            3             62
  CLUS_5            4             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED        7      3      3      6
  OGDH WILD-TYPE     86     40    124    113
D52V9, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            7             86
  CLUS_2            3             40
  CLUS_3            3            124
  CLUS_4            6            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGDH MUTATED        2      3      4      5      0      5
  OGDH WILD-TYPE     72     44     84     60     27     76
D52V10, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            2             72
  CLUS_2            3             44
  CLUS_3            4             84
  CLUS_4            5             60
  CLUS_5            0             27
  CLUS_6            5             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = SCARF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARF2 MUTATED        3      4      0      1
  SCARF2 WILD-TYPE    159    133     59     33
D53V1, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              3              159
  CLUS_2              4              133
  CLUS_3              0               59
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARF2 MUTATED        0      3      3      2
  SCARF2 WILD-TYPE    135    109     66     77
D53V2, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              0              135
  CLUS_2              3              109
  CLUS_3              3               66
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCARF2 MUTATED        0      0      0      0      0
  SCARF2 WILD-TYPE     37     29     36      5     20
D53V3, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARF2 MUTATED        0      0      0      0
  SCARF2 WILD-TYPE     43     38     27     19
D53V4, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARF2 MUTATED        0      7      1
  SCARF2 WILD-TYPE    114    166    103
D53V5, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              0              114
  CLUS_2              7              166
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARF2 MUTATED        3      4      1
  SCARF2 WILD-TYPE    113    102    168
D53V6, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              3              113
  CLUS_2              4              102
  CLUS_3              1              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARF2 MUTATED        2      3      3
  SCARF2 WILD-TYPE    117     93    174
D53V7, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              2              117
  CLUS_2              3               93
  CLUS_3              3              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCARF2 MUTATED        0      2      1      3      2
  SCARF2 WILD-TYPE     86     97     88     62     51
D53V8, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              2               97
  CLUS_3              1               88
  CLUS_4              3               62
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARF2 MUTATED        0      1      4      2
  SCARF2 WILD-TYPE     93     42    123    117
D53V9, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              0               93
  CLUS_2              1               42
  CLUS_3              4              123
  CLUS_4              2              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCARF2 MUTATED        1      1      3      2      0      0
  SCARF2 WILD-TYPE     73     46     85     63     27     81
D53V10, multiclass
        clus
vv       SCARF2 MUTATED SCARF2 WILD-TYPE
  CLUS_1              1               73
  CLUS_2              1               46
  CLUS_3              3               85
  CLUS_4              2               63
  CLUS_5              0               27
  CLUS_6              0               81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = SSH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSH3 MUTATED       10      2      0      3
  SSH3 WILD-TYPE    152    135     59     31
D54V1, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1           10            152
  CLUS_2            2            135
  CLUS_3            0             59
  CLUS_4            3             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSH3 MUTATED        2      3      5      5
  SSH3 WILD-TYPE    133    109     64     74
D54V2, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            2            133
  CLUS_2            3            109
  CLUS_3            5             64
  CLUS_4            5             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSH3 MUTATED        2      1      0      0      0
  SSH3 WILD-TYPE     35     28     36      5     20
D54V3, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             28
  CLUS_3            0             36
  CLUS_4            0              5
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSH3 MUTATED        2      1      0      0
  SSH3 WILD-TYPE     41     37     27     19
D54V4, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            1             37
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SSH3 MUTATED        1     11      3
  SSH3 WILD-TYPE    113    162    101
D54V5, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            1            113
  CLUS_2           11            162
  CLUS_3            3            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SSH3 MUTATED        6      5      4
  SSH3 WILD-TYPE    110    101    165
D54V6, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            6            110
  CLUS_2            5            101
  CLUS_3            4            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SSH3 MUTATED        1      6      8
  SSH3 WILD-TYPE    118     90    169
D54V7, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            1            118
  CLUS_2            6             90
  CLUS_3            8            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSH3 MUTATED        0      6      4      4      1
  SSH3 WILD-TYPE     86     93     85     61     52
D54V8, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            6             93
  CLUS_3            4             85
  CLUS_4            4             61
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSH3 MUTATED        2      3      7      3
  SSH3 WILD-TYPE     91     40    120    116
D54V9, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            2             91
  CLUS_2            3             40
  CLUS_3            7            120
  CLUS_4            3            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SSH3 MUTATED        1      3      4      4      2      1
  SSH3 WILD-TYPE     73     44     84     61     25     80
D54V10, multiclass
        clus
vv       SSH3 MUTATED SSH3 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            3             44
  CLUS_3            4             84
  CLUS_4            4             61
  CLUS_5            2             25
  CLUS_6            1             80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        3      2      0      0
  HLA-A WILD-TYPE    159    135     59     34
D55V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             159
  CLUS_2             2             135
  CLUS_3             0              59
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2      0      2      1
  HLA-A WILD-TYPE    133    112     67     78
D55V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             133
  CLUS_2             0             112
  CLUS_3             2              67
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        0      0      1      0      1
  HLA-A WILD-TYPE     37     29     35      5     19
D55V3, multiclass
[1] "Remove cluster labels:" "HLA-A MUTATED"         
clus
  HLA-A MUTATED HLA-A WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A3JM      TCGA-BT-A0S7 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N      TCGA-BT-A20O 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R      TCGA-BT-A20T 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W      TCGA-BT-A20X 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD      TCGA-BT-A3PH 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B      TCGA-BT-A42C 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1      TCGA-C4-A0F6 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS      TCGA-CF-A27C 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH      TCGA-CF-A3MI 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU      TCGA-CU-A3YL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6      TCGA-DK-A1AA 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD      TCGA-DK-A1AE 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WX      TCGA-DK-A3WY 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC      TCGA-E7-A3X6 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4      TCGA-FD-A3B5 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8      TCGA-FD-A3N5 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ      TCGA-FD-A3SL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO      TCGA-FD-A3SP 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS      TCGA-FJ-A3Z7 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC      TCGA-G2-A2EF 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE      TCGA-G2-A3VY 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-K4-A3WV 
"HLA-A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      0      0      1
  HLA-A WILD-TYPE     42     38     27     18
D55V4, multiclass
[1] "Remove cluster labels:" "HLA-A MUTATED"         
clus
  HLA-A MUTATED HLA-A WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A3JM      TCGA-BT-A0S7 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N      TCGA-BT-A20O 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R      TCGA-BT-A20T 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W      TCGA-BT-A20X 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD      TCGA-BT-A3PH 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B      TCGA-BT-A42C 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1      TCGA-C4-A0F6 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS      TCGA-CF-A27C 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH      TCGA-CF-A3MI 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU      TCGA-CU-A3YL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6      TCGA-DK-A1AA 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD      TCGA-DK-A1AE 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WX      TCGA-DK-A3WY 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC      TCGA-E7-A3X6 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4      TCGA-FD-A3B5 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8      TCGA-FD-A3N5 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ      TCGA-FD-A3SL 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO      TCGA-FD-A3SP 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS      TCGA-FJ-A3Z7 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC      TCGA-G2-A2EF 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE      TCGA-G2-A3VY 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-K4-A3WV 
"HLA-A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      2      1
  HLA-A WILD-TYPE    112    171    103
D55V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             112
  CLUS_2             2             171
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      1      2
  HLA-A WILD-TYPE    114    105    167
D55V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             114
  CLUS_2             1             105
  CLUS_3             2             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        1      2      2
  HLA-A WILD-TYPE    118     94    175
D55V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1             118
  CLUS_2             2              94
  CLUS_3             2             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      2      0      1      1
  HLA-A WILD-TYPE     85     97     89     64     52
D55V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              85
  CLUS_2             2              97
  CLUS_3             0              89
  CLUS_4             1              64
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      1      1      2
  HLA-A WILD-TYPE     92     42    126    117
D55V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              92
  CLUS_2             1              42
  CLUS_3             1             126
  CLUS_4             2             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        1      1      0      1      1      1
  HLA-A WILD-TYPE     73     46     88     64     26     80
D55V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              73
  CLUS_2             1              46
  CLUS_3             0              88
  CLUS_4             1              64
  CLUS_5             1              26
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = PARD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD3 MUTATED        8      8      4      3
  PARD3 WILD-TYPE    154    129     55     31
D56V1, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             8             154
  CLUS_2             8             129
  CLUS_3             4              55
  CLUS_4             3              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD3 MUTATED        9      8      4      2
  PARD3 WILD-TYPE    126    104     65     77
D56V2, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             9             126
  CLUS_2             8             104
  CLUS_3             4              65
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARD3 MUTATED        3      2      2      0      0
  PARD3 WILD-TYPE     34     27     34      5     20
D56V3, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              27
  CLUS_3             2              34
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD3 MUTATED        3      4      0      0
  PARD3 WILD-TYPE     40     34     27     19
D56V4, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             4              34
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARD3 MUTATED        7     11      5
  PARD3 WILD-TYPE    107    162     99
D56V5, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             7             107
  CLUS_2            11             162
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARD3 MUTATED        6      5     12
  PARD3 WILD-TYPE    110    101    157
D56V6, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             6             110
  CLUS_2             5             101
  CLUS_3            12             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARD3 MUTATED        3      8     10
  PARD3 WILD-TYPE    116     88    167
D56V7, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             8              88
  CLUS_3            10             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARD3 MUTATED        5      7      2      4      3
  PARD3 WILD-TYPE     81     92     87     61     50
D56V8, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             5              81
  CLUS_2             7              92
  CLUS_3             2              87
  CLUS_4             4              61
  CLUS_5             3              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD3 MUTATED        5      4      5      5
  PARD3 WILD-TYPE     88     39    122    114
D56V9, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             5              88
  CLUS_2             4              39
  CLUS_3             5             122
  CLUS_4             5             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARD3 MUTATED        4      4      5      3      0      3
  PARD3 WILD-TYPE     70     43     83     62     27     78
D56V10, multiclass
        clus
vv       PARD3 MUTATED PARD3 WILD-TYPE
  CLUS_1             4              70
  CLUS_2             4              43
  CLUS_3             5              83
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = BAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        2      9      2      1
  BAP1 WILD-TYPE    160    128     57     33
D57V1, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2            160
  CLUS_2            9            128
  CLUS_3            2             57
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        0      8      3      3
  BAP1 WILD-TYPE    135    104     66     76
D57V2, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            8            104
  CLUS_3            3             66
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAP1 MUTATED        2      0      1      0      1
  BAP1 WILD-TYPE     35     29     35      5     19
D57V3, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        2      0      1      1
  BAP1 WILD-TYPE     41     38     26     18
D57V4, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             38
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        3     10      1
  BAP1 WILD-TYPE    111    163    103
D57V5, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            3            111
  CLUS_2           10            163
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        8      5      1
  BAP1 WILD-TYPE    108    101    168
D57V6, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            8            108
  CLUS_2            5            101
  CLUS_3            1            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        0      6      8
  BAP1 WILD-TYPE    119     90    169
D57V7, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0            119
  CLUS_2            6             90
  CLUS_3            8            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAP1 MUTATED        2      5      5      2      0
  BAP1 WILD-TYPE     84     94     84     63     53
D57V8, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            5             94
  CLUS_3            5             84
  CLUS_4            2             63
  CLUS_5            0             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        0      4      8      2
  BAP1 WILD-TYPE     93     39    119    117
D57V9, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             93
  CLUS_2            4             39
  CLUS_3            8            119
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAP1 MUTATED        0      4      6      2      2      0
  BAP1 WILD-TYPE     74     43     82     63     25     81
D57V10, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0             74
  CLUS_2            4             43
  CLUS_3            6             82
  CLUS_4            2             63
  CLUS_5            2             25
  CLUS_6            0             81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = RIPK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        6      8      1      2
  RIPK4 WILD-TYPE    156    129     58     32
D58V1, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             6             156
  CLUS_2             8             129
  CLUS_3             1              58
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        2      9      2      4
  RIPK4 WILD-TYPE    133    103     67     75
D58V2, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             9             103
  CLUS_3             2              67
  CLUS_4             4              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIPK4 MUTATED        2      1      1      0      1
  RIPK4 WILD-TYPE     35     28     35      5     19
D58V3, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              28
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        2      1      1      1
  RIPK4 WILD-TYPE     41     37     26     18
D58V4, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             1              37
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        4     12      1
  RIPK4 WILD-TYPE    110    161    103
D58V5, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             4             110
  CLUS_2            12             161
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        7      8      2
  RIPK4 WILD-TYPE    109     98    167
D58V6, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             7             109
  CLUS_2             8              98
  CLUS_3             2             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        4      5      8
  RIPK4 WILD-TYPE    115     91    169
D58V7, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             4             115
  CLUS_2             5              91
  CLUS_3             8             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIPK4 MUTATED        2      4      4      4      3
  RIPK4 WILD-TYPE     84     95     85     61     50
D58V8, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             4              95
  CLUS_3             4              85
  CLUS_4             4              61
  CLUS_5             3              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        1      2      7      7
  RIPK4 WILD-TYPE     92     41    120    112
D58V9, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             2              41
  CLUS_3             7             120
  CLUS_4             7             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIPK4 MUTATED        5      1      6      4      1      0
  RIPK4 WILD-TYPE     69     46     82     61     26     81
D58V10, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             5              69
  CLUS_2             1              46
  CLUS_3             6              82
  CLUS_4             4              61
  CLUS_5             1              26
  CLUS_6             0              81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = TMCO4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO4 MUTATED        4      7      1      0
  TMCO4 WILD-TYPE    158    130     58     34
D59V1, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             4             158
  CLUS_2             7             130
  CLUS_3             1              58
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO4 MUTATED        1      5      5      1
  TMCO4 WILD-TYPE    134    107     64     78
D59V2, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             5             107
  CLUS_3             5              64
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO4 MUTATED        1      0      0      0      0
  TMCO4 WILD-TYPE     36     29     36      5     20
D59V3, multiclass
[1] "Remove cluster labels:" "TMCO4 MUTATED"         
clus
  TMCO4 MUTATED TMCO4 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3IL      TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3IT      TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3WX      TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A2EL      TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A3IE      TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GC-A3WC      TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GD-A3OQ      TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A3JW      TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A3QH      TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A40G      TCGA-H4-A2HO      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO4 MUTATED        0      0      0      1
  TMCO4 WILD-TYPE     43     38     27     18
D59V4, multiclass
[1] "Remove cluster labels:" "TMCO4 MUTATED"         
clus
  TMCO4 MUTATED TMCO4 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3IL      TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3IT      TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-DK-A3WX      TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A2EL      TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-G2-A3IE      TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GC-A3WC      TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GD-A3OQ      TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A3JW      TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A3QH      TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-GV-A40G      TCGA-H4-A2HO      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"TMCO4 WILD-TYPE" "TMCO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO4 MUTATED        2      8      2
  TMCO4 WILD-TYPE    112    165    102
D59V5, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             8             165
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO4 MUTATED        2      7      3
  TMCO4 WILD-TYPE    114     99    166
D59V6, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             2             114
  CLUS_2             7              99
  CLUS_3             3             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO4 MUTATED        2      2      8
  TMCO4 WILD-TYPE    117     94    169
D59V7, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             2              94
  CLUS_3             8             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMCO4 MUTATED        1      2      6      2      1
  TMCO4 WILD-TYPE     85     97     83     63     52
D59V8, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             2              97
  CLUS_3             6              83
  CLUS_4             2              63
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO4 MUTATED        1      0      8      2
  TMCO4 WILD-TYPE     92     43    119    117
D59V9, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             0              43
  CLUS_3             8             119
  CLUS_4             2             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMCO4 MUTATED        1      0      6      1      2      1
  TMCO4 WILD-TYPE     73     47     82     64     25     80
D59V10, multiclass
        clus
vv       TMCO4 MUTATED TMCO4 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             0              47
  CLUS_3             6              82
  CLUS_4             1              64
  CLUS_5             2              25
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        5      4      3      2
  CDH1 WILD-TYPE    157    133     56     32
D60V1, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5            157
  CLUS_2            4            133
  CLUS_3            3             56
  CLUS_4            2             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        4      4      4      2
  CDH1 WILD-TYPE    131    108     65     77
D60V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4            131
  CLUS_2            4            108
  CLUS_3            4             65
  CLUS_4            2             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        2      1      1      0      1
  CDH1 WILD-TYPE     35     28     35      5     19
D60V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             28
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        2      2      0      1
  CDH1 WILD-TYPE     41     36     27     18
D60V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            2             36
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        4      7      3
  CDH1 WILD-TYPE    110    166    101
D60V5, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4            110
  CLUS_2            7            166
  CLUS_3            3            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        2      5      7
  CDH1 WILD-TYPE    114    101    162
D60V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2            114
  CLUS_2            5            101
  CLUS_3            7            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        6      1      7
  CDH1 WILD-TYPE    113     95    170
D60V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            6            113
  CLUS_2            1             95
  CLUS_3            7            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        5      1      6      0      2
  CDH1 WILD-TYPE     81     98     83     65     51
D60V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5             81
  CLUS_2            1             98
  CLUS_3            6             83
  CLUS_4            0             65
  CLUS_5            2             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        4      0      6      4
  CDH1 WILD-TYPE     89     43    121    115
D60V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4             89
  CLUS_2            0             43
  CLUS_3            6            121
  CLUS_4            4            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH1 MUTATED        2      0      4      1      1      6
  CDH1 WILD-TYPE     72     47     84     64     26     75
D60V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             72
  CLUS_2            0             47
  CLUS_3            4             84
  CLUS_4            1             64
  CLUS_5            1             26
  CLUS_6            6             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2      5      0      0
  NRAS WILD-TYPE    160    132     59     34
D61V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2            160
  CLUS_2            5            132
  CLUS_3            0             59
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2      3      2      0
  NRAS WILD-TYPE    133    109     67     79
D61V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2            133
  CLUS_2            3            109
  CLUS_3            2             67
  CLUS_4            0             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      1      0      0      1
  NRAS WILD-TYPE     37     28     36      5     19
D61V3, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20X 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD     TCGA-BT-A3PH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS     TCGA-CF-A27C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FJ-A3Z7     TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-K4-A3WV 
"NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      1      0      1
  NRAS WILD-TYPE     43     37     27     18
D61V4, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20X 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD     TCGA-BT-A3PH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS     TCGA-CF-A27C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FJ-A3Z7     TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-K4-A3WV 
"NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      4      2
  NRAS WILD-TYPE    113    169    102
D61V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            113
  CLUS_2            4            169
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        3      2      2
  NRAS WILD-TYPE    113    104    167
D61V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            3            113
  CLUS_2            2            104
  CLUS_3            2            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      3      4
  NRAS WILD-TYPE    119     93    173
D61V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            119
  CLUS_2            3             93
  CLUS_3            4            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        1      3      3      0      0
  NRAS WILD-TYPE     85     96     86     65     53
D61V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1             85
  CLUS_2            3             96
  CLUS_3            3             86
  CLUS_4            0             65
  CLUS_5            0             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2      3      2      0
  NRAS WILD-TYPE     91     40    125    119
D61V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             91
  CLUS_2            3             40
  CLUS_3            2            125
  CLUS_4            0            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRAS MUTATED        0      3      2      0      1      1
  NRAS WILD-TYPE     74     44     86     65     26     80
D61V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             74
  CLUS_2            3             44
  CLUS_3            2             86
  CLUS_4            0             65
  CLUS_5            1             26
  CLUS_6            1             80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = ARID1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        7     15      0      1
  ARID1B WILD-TYPE    155    122     59     33
D62V1, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              7              155
  CLUS_2             15              122
  CLUS_3              0               59
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        5     10      2      6
  ARID1B WILD-TYPE    130    102     67     73
D62V2, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              5              130
  CLUS_2             10              102
  CLUS_3              2               67
  CLUS_4              6               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        2      1      1      0      0
  ARID1B WILD-TYPE     35     28     35      5     20
D62V3, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               28
  CLUS_3              1               35
  CLUS_4              0                5
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        3      1      0      0
  ARID1B WILD-TYPE     40     37     27     19
D62V4, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              3               40
  CLUS_2              1               37
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED        7     14      2
  ARID1B WILD-TYPE    107    159    102
D62V5, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              7              107
  CLUS_2             14              159
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED       12      5      6
  ARID1B WILD-TYPE    104    101    163
D62V6, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1             12              104
  CLUS_2              5              101
  CLUS_3              6              163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED        4     10      9
  ARID1B WILD-TYPE    115     86    168
D62V7, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              4              115
  CLUS_2             10               86
  CLUS_3              9              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1      9      6      6      1
  ARID1B WILD-TYPE     85     90     83     59     52
D62V8, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               85
  CLUS_2              9               90
  CLUS_3              6               83
  CLUS_4              6               59
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        4      5      7      6
  ARID1B WILD-TYPE     89     38    120    113
D62V9, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              4               89
  CLUS_2              5               38
  CLUS_3              7              120
  CLUS_4              6              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1B MUTATED        3      5      8      4      0      2
  ARID1B WILD-TYPE     71     42     80     61     27     79
D62V10, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              3               71
  CLUS_2              5               42
  CLUS_3              8               80
  CLUS_4              4               61
  CLUS_5              0               27
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = ZNF511 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF511 MUTATED        4      5      0      1
  ZNF511 WILD-TYPE    158    132     59     33
D63V1, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              4              158
  CLUS_2              5              132
  CLUS_3              0               59
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF511 MUTATED        4      3      3      0
  ZNF511 WILD-TYPE    131    109     66     79
D63V2, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              4              131
  CLUS_2              3              109
  CLUS_3              3               66
  CLUS_4              0               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF511 MUTATED        0      0      1      0      0
  ZNF511 WILD-TYPE     37     29     35      5     20
D63V3, multiclass
[1] "Remove cluster labels:" "ZNF511 MUTATED"        
clus
  ZNF511 MUTATED ZNF511 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A2EC       TCGA-G2-A2EF       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF511 MUTATED        0      0      0      1
  ZNF511 WILD-TYPE     43     38     27     18
D63V4, multiclass
[1] "Remove cluster labels:" "ZNF511 MUTATED"        
clus
  ZNF511 MUTATED ZNF511 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A2EC       TCGA-G2-A2EF       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"ZNF511 WILD-TYPE" "ZNF511 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF511 MUTATED        3      4      2
  ZNF511 WILD-TYPE    111    169    102
D63V5, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              3              111
  CLUS_2              4              169
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF511 MUTATED        3      2      4
  ZNF511 WILD-TYPE    113    104    165
D63V6, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              3              113
  CLUS_2              2              104
  CLUS_3              4              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF511 MUTATED        3      1      5
  ZNF511 WILD-TYPE    116     95    172
D63V7, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              3              116
  CLUS_2              1               95
  CLUS_3              5              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF511 MUTATED        4      1      0      2      2
  ZNF511 WILD-TYPE     82     98     89     63     51
D63V8, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              1               98
  CLUS_3              0               89
  CLUS_4              2               63
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF511 MUTATED        4      1      2      2
  ZNF511 WILD-TYPE     89     42    125    117
D63V9, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              4               89
  CLUS_2              1               42
  CLUS_3              2              125
  CLUS_4              2              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF511 MUTATED        3      1      1      0      1      3
  ZNF511 WILD-TYPE     71     46     87     65     26     78
D63V10, multiclass
        clus
vv       ZNF511 MUTATED ZNF511 WILD-TYPE
  CLUS_1              3               71
  CLUS_2              1               46
  CLUS_3              1               87
  CLUS_4              0               65
  CLUS_5              1               26
  CLUS_6              3               78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = TFG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFG MUTATED        3      6      1      0
  TFG WILD-TYPE    159    131     58     34
D64V1, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           3           159
  CLUS_2           6           131
  CLUS_3           1            58
  CLUS_4           0            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFG MUTATED        1      5      4      1
  TFG WILD-TYPE    134    107     65     78
D64V2, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1           134
  CLUS_2           5           107
  CLUS_3           4            65
  CLUS_4           1            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFG MUTATED        1      0      1      0      2
  TFG WILD-TYPE     36     29     35      5     18
D64V3, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1            36
  CLUS_2           0            29
  CLUS_3           1            35
  CLUS_4           0             5
  CLUS_5           2            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFG MUTATED        2      0      0      2
  TFG WILD-TYPE     41     38     27     17
D64V4, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           2            41
  CLUS_2           0            38
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TFG MUTATED        0     10      1
  TFG WILD-TYPE    114    163    103
D64V5, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           0           114
  CLUS_2          10           163
  CLUS_3           1           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TFG MUTATED        3      6      2
  TFG WILD-TYPE    113    100    167
D64V6, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           3           113
  CLUS_2           6           100
  CLUS_3           2           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TFG MUTATED        1      2      8
  TFG WILD-TYPE    118     94    169
D64V7, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1           118
  CLUS_2           2            94
  CLUS_3           8           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFG MUTATED        1      2      4      4      0
  TFG WILD-TYPE     85     97     85     61     53
D64V8, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1            85
  CLUS_2           2            97
  CLUS_3           4            85
  CLUS_4           4            61
  CLUS_5           0            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFG MUTATED        1      0      8      2
  TFG WILD-TYPE     92     43    119    117
D64V9, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1            92
  CLUS_2           0            43
  CLUS_3           8           119
  CLUS_4           2           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFG MUTATED        1      0      9      1      0      0
  TFG WILD-TYPE     73     47     79     64     27     81
D64V10, multiclass
        clus
vv       TFG MUTATED TFG WILD-TYPE
  CLUS_1           1            73
  CLUS_2           0            47
  CLUS_3           9            79
  CLUS_4           1            64
  CLUS_5           0            27
  CLUS_6           0            81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = FUS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUS MUTATED        3      2      2      2
  FUS WILD-TYPE    159    135     57     32
D65V1, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           3           159
  CLUS_2           2           135
  CLUS_3           2            57
  CLUS_4           2            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUS MUTATED        3      2      1      3
  FUS WILD-TYPE    132    110     68     76
D65V2, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           3           132
  CLUS_2           2           110
  CLUS_3           1            68
  CLUS_4           3            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUS MUTATED        1      0      2      1      0
  FUS WILD-TYPE     36     29     34      4     20
D65V3, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           1            36
  CLUS_2           0            29
  CLUS_3           2            34
  CLUS_4           1             4
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUS MUTATED        2      1      1      0
  FUS WILD-TYPE     41     37     26     19
D65V4, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           2            41
  CLUS_2           1            37
  CLUS_3           1            26
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FUS MUTATED        3      3      3
  FUS WILD-TYPE    111    170    101
D65V5, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           3           111
  CLUS_2           3           170
  CLUS_3           3           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FUS MUTATED        1      2      6
  FUS WILD-TYPE    115    104    163
D65V6, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           1           115
  CLUS_2           2           104
  CLUS_3           6           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FUS MUTATED        3      3      3
  FUS WILD-TYPE    116     93    174
D65V7, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           3           116
  CLUS_2           3            93
  CLUS_3           3           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUS MUTATED        1      2      1      4      1
  FUS WILD-TYPE     85     97     88     61     52
D65V8, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           1            85
  CLUS_2           2            97
  CLUS_3           1            88
  CLUS_4           4            61
  CLUS_5           1            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUS MUTATED        2      1      2      3
  FUS WILD-TYPE     91     42    125    116
D65V9, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           2            91
  CLUS_2           1            42
  CLUS_3           2           125
  CLUS_4           3           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FUS MUTATED        1      1      2      2      0      2
  FUS WILD-TYPE     73     46     86     63     27     79
D65V10, multiclass
        clus
vv       FUS MUTATED FUS WILD-TYPE
  CLUS_1           1            73
  CLUS_2           1            46
  CLUS_3           2            86
  CLUS_4           2            63
  CLUS_5           0            27
  CLUS_6           2            79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = ASXL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        6     11      5      0
  ASXL1 WILD-TYPE    156    126     54     34
D66V1, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             6             156
  CLUS_2            11             126
  CLUS_3             5              54
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        7     12      1      2
  ASXL1 WILD-TYPE    128    100     68     77
D66V2, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             7             128
  CLUS_2            12             100
  CLUS_3             1              68
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL1 MUTATED        4      1      2      0      2
  ASXL1 WILD-TYPE     33     28     34      5     18
D66V3, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             4              33
  CLUS_2             1              28
  CLUS_3             2              34
  CLUS_4             0               5
  CLUS_5             2              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        5      3      0      1
  ASXL1 WILD-TYPE     38     35     27     18
D66V4, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5              38
  CLUS_2             3              35
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        5     12      5
  ASXL1 WILD-TYPE    109    161     99
D66V5, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5             109
  CLUS_2            12             161
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        5      9      8
  ASXL1 WILD-TYPE    111     97    161
D66V6, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             9              97
  CLUS_3             8             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        2      8     12
  ASXL1 WILD-TYPE    117     88    165
D66V7, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             8              88
  CLUS_3            12             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL1 MUTATED        4      8      3      6      1
  ASXL1 WILD-TYPE     82     91     86     59     52
D66V8, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             8              91
  CLUS_3             3              86
  CLUS_4             6              59
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        5      3     10      4
  ASXL1 WILD-TYPE     88     40    117    115
D66V9, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5              88
  CLUS_2             3              40
  CLUS_3            10             117
  CLUS_4             4             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASXL1 MUTATED        1      3     10      3      1      4
  ASXL1 WILD-TYPE     73     44     78     62     26     77
D66V10, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             3              44
  CLUS_3            10              78
  CLUS_4             3              62
  CLUS_5             1              26
  CLUS_6             4              77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = CNOT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        5      1      3      2
  CNOT3 WILD-TYPE    157    136     56     32
D67V1, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             5             157
  CLUS_2             1             136
  CLUS_3             3              56
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        6      2      1      2
  CNOT3 WILD-TYPE    129    110     68     77
D67V2, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             6             129
  CLUS_2             2             110
  CLUS_3             1              68
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT3 MUTATED        2      2      0      1      0
  CNOT3 WILD-TYPE     35     27     36      4     20
D67V3, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              27
  CLUS_3             0              36
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        3      1      1      0
  CNOT3 WILD-TYPE     40     37     26     19
D67V4, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              37
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        3      2      6
  CNOT3 WILD-TYPE    111    171     98
D67V5, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             3             111
  CLUS_2             2             171
  CLUS_3             6              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        4      0      7
  CNOT3 WILD-TYPE    112    106    162
D67V6, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             4             112
  CLUS_2             0             106
  CLUS_3             7             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        3      3      5
  CNOT3 WILD-TYPE    116     93    172
D67V7, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             3              93
  CLUS_3             5             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT3 MUTATED        3      6      0      2      0
  CNOT3 WILD-TYPE     83     93     89     63     53
D67V8, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             6              93
  CLUS_3             0              89
  CLUS_4             2              63
  CLUS_5             0              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        6      3      1      1
  CNOT3 WILD-TYPE     87     40    126    118
D67V9, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             6              87
  CLUS_2             3              40
  CLUS_3             1             126
  CLUS_4             1             118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNOT3 MUTATED        0      2      0      3      0      6
  CNOT3 WILD-TYPE     74     45     88     62     27     75
D67V10, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             0              74
  CLUS_2             2              45
  CLUS_3             0              88
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             6              75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        9     13      6      1
  ARID2 WILD-TYPE    153    124     53     33
D68V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             9             153
  CLUS_2            13             124
  CLUS_3             6              53
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        7     12      4      6
  ARID2 WILD-TYPE    128    100     65     73
D68V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             7             128
  CLUS_2            12             100
  CLUS_3             4              65
  CLUS_4             6              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        2      3      5      1      1
  ARID2 WILD-TYPE     35     26     31      4     19
D68V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              26
  CLUS_3             5              31
  CLUS_4             1               4
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        3      6      3      0
  ARID2 WILD-TYPE     40     32     24     19
D68V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             6              32
  CLUS_3             3              24
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        9     16      4
  ARID2 WILD-TYPE    105    157    100
D68V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             9             105
  CLUS_2            16             157
  CLUS_3             4             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       11     10      8
  ARID2 WILD-TYPE    105     96    161
D68V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            11             105
  CLUS_2            10              96
  CLUS_3             8             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       11     12      6
  ARID2 WILD-TYPE    108     84    171
D68V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            11             108
  CLUS_2            12              84
  CLUS_3             6             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        3      8      7      4      7
  ARID2 WILD-TYPE     83     91     82     61     46
D68V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             8              91
  CLUS_3             7              82
  CLUS_4             4              61
  CLUS_5             7              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        3      4      6     16
  ARID2 WILD-TYPE     90     39    121    103
D68V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3              90
  CLUS_2             4              39
  CLUS_3             6             121
  CLUS_4            16             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID2 MUTATED       10      4      6      6      0      3
  ARID2 WILD-TYPE     64     43     82     59     27     78
D68V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            10              64
  CLUS_2             4              43
  CLUS_3             6              82
  CLUS_4             6              59
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = ZNF773 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF773 MUTATED        2      3      2      0
  ZNF773 WILD-TYPE    160    134     57     34
D69V1, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              2              160
  CLUS_2              3              134
  CLUS_3              2               57
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF773 MUTATED        3      3      1      0
  ZNF773 WILD-TYPE    132    109     68     79
D69V2, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              3              109
  CLUS_3              1               68
  CLUS_4              0               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF773 MUTATED        1      0      0      0      0
  ZNF773 WILD-TYPE     36     29     36      5     20
D69V3, multiclass
[1] "Remove cluster labels:" "ZNF773 MUTATED"        
clus
  ZNF773 MUTATED ZNF773 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF773 MUTATED        0      0      0      1
  ZNF773 WILD-TYPE     43     38     27     18
D69V4, multiclass
[1] "Remove cluster labels:" "ZNF773 MUTATED"        
clus
  ZNF773 MUTATED ZNF773 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-E5-A2PC       TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3B4       TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3B8       TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SJ       TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SO       TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-FD-A3SS       TCGA-FJ-A3Z7       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"ZNF773 WILD-TYPE" "ZNF773 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF773 MUTATED        2      4      0
  ZNF773 WILD-TYPE    112    169    104
D69V5, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              2              112
  CLUS_2              4              169
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF773 MUTATED        1      3      2
  ZNF773 WILD-TYPE    115    103    167
D69V6, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              3              103
  CLUS_3              2              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF773 MUTATED        1      2      4
  ZNF773 WILD-TYPE    118     94    173
D69V7, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              1              118
  CLUS_2              2               94
  CLUS_3              4              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF773 MUTATED        2      3      2      0      0
  ZNF773 WILD-TYPE     84     96     87     65     53
D69V8, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              3               96
  CLUS_3              2               87
  CLUS_4              0               65
  CLUS_5              0               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF773 MUTATED        3      1      3      0
  ZNF773 WILD-TYPE     90     42    124    119
D69V9, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              3               90
  CLUS_2              1               42
  CLUS_3              3              124
  CLUS_4              0              119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF773 MUTATED        0      1      3      0      0      3
  ZNF773 WILD-TYPE     74     46     85     65     27     78
D69V10, multiclass
        clus
vv       ZNF773 MUTATED ZNF773 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              1               46
  CLUS_3              3               85
  CLUS_4              0               65
  CLUS_5              0               27
  CLUS_6              3               78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DAZAP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAZAP1 MUTATED        2      2      1      1
  DAZAP1 WILD-TYPE    160    135     58     33
D70V1, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              2              160
  CLUS_2              2              135
  CLUS_3              1               58
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAZAP1 MUTATED        1      5      0      0
  DAZAP1 WILD-TYPE    134    107     69     79
D70V2, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              1              134
  CLUS_2              5              107
  CLUS_3              0               69
  CLUS_4              0               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAZAP1 MUTATED        0      0      0      0      0
  DAZAP1 WILD-TYPE     37     29     36      5     20
D70V3, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAZAP1 MUTATED        0      0      0      0
  DAZAP1 WILD-TYPE     43     38     27     19
D70V4, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DAZAP1 MUTATED        1      5      0
  DAZAP1 WILD-TYPE    113    168    104
D70V5, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              1              113
  CLUS_2              5              168
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DAZAP1 MUTATED        0      5      1
  DAZAP1 WILD-TYPE    116    101    168
D70V6, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              0              116
  CLUS_2              5              101
  CLUS_3              1              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DAZAP1 MUTATED        1      0      5
  DAZAP1 WILD-TYPE    118     96    172
D70V7, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              1              118
  CLUS_2              0               96
  CLUS_3              5              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAZAP1 MUTATED        0      0      3      3      0
  DAZAP1 WILD-TYPE     86     99     86     62     53
D70V8, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              0               86
  CLUS_2              0               99
  CLUS_3              3               86
  CLUS_4              3               62
  CLUS_5              0               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAZAP1 MUTATED        1      0      3      0
  DAZAP1 WILD-TYPE     92     43    124    119
D70V9, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              1               92
  CLUS_2              0               43
  CLUS_3              3              124
  CLUS_4              0              119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAZAP1 MUTATED        0      0      3      0      0      1
  DAZAP1 WILD-TYPE     74     47     85     65     27     80
D70V10, multiclass
        clus
vv       DAZAP1 MUTATED DAZAP1 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              0               47
  CLUS_3              3               85
  CLUS_4              0               65
  CLUS_5              0               27
  CLUS_6              1               80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = ADC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        3      3      0      0
  ADC WILD-TYPE    159    134     59     34
D71V1, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           3           159
  CLUS_2           3           134
  CLUS_3           0            59
  CLUS_4           0            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        2      3      0      1
  ADC WILD-TYPE    133    109     69     78
D71V2, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           2           133
  CLUS_2           3           109
  CLUS_3           0            69
  CLUS_4           1            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        0      0      0      0      1
  ADC WILD-TYPE     37     29     36      5     19
D71V3, multiclass
[1] "Remove cluster labels:" "ADC MUTATED"           
clus
  ADC MUTATED ADC WILD-TYPE 
            1           126 
   TCGA-BL-A0C8    TCGA-BL-A13I    TCGA-BL-A13J    TCGA-BL-A3JM    TCGA-BT-A0S7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A0YX    TCGA-BT-A20J    TCGA-BT-A20N    TCGA-BT-A20O    TCGA-BT-A20P 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A20Q    TCGA-BT-A20R    TCGA-BT-A20T    TCGA-BT-A20U    TCGA-BT-A20V 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A20W    TCGA-BT-A20X    TCGA-BT-A2LA    TCGA-BT-A2LB    TCGA-BT-A2LD 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A3PH    TCGA-BT-A3PJ    TCGA-BT-A3PK    TCGA-BT-A42B    TCGA-BT-A42C 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-C4-A0EZ    TCGA-C4-A0F0    TCGA-C4-A0F1    TCGA-C4-A0F6    TCGA-C4-A0F7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CF-A1HR    TCGA-CF-A1HS    TCGA-CF-A27C    TCGA-CF-A3MF    TCGA-CF-A3MG 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CF-A3MH    TCGA-CF-A3MI    TCGA-CU-A0YN    TCGA-CU-A3KJ    TCGA-CU-A3QU 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CU-A3YL    TCGA-DK-A1A3    TCGA-DK-A1A5    TCGA-DK-A1A6    TCGA-DK-A1AA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A1AB    TCGA-DK-A1AC    TCGA-DK-A1AD    TCGA-DK-A1AE    TCGA-DK-A1AF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A1AG    TCGA-DK-A2HX    TCGA-DK-A2I1    TCGA-DK-A2I2    TCGA-DK-A2I4 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3IK    TCGA-DK-A3IL    TCGA-DK-A3IM    TCGA-DK-A3IN    TCGA-DK-A3IQ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3IT    TCGA-DK-A3IU    TCGA-DK-A3IV    TCGA-DK-A3WW    TCGA-DK-A3WX 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3WY    TCGA-DK-A3X1    TCGA-DK-A3X2    TCGA-E5-A2PC    TCGA-E7-A3X6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-E7-A3Y1    TCGA-FD-A3B3    TCGA-FD-A3B4    TCGA-FD-A3B5    TCGA-FD-A3B6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3B7    TCGA-FD-A3B8    TCGA-FD-A3N5    TCGA-FD-A3N6    TCGA-FD-A3NA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3SJ    TCGA-FD-A3SL    TCGA-FD-A3SM    TCGA-FD-A3SN    TCGA-FD-A3SO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3SP    TCGA-FD-A3SQ    TCGA-FD-A3SR    TCGA-FD-A3SS    TCGA-FJ-A3Z7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FJ-A3ZE    TCGA-FJ-A3ZF    TCGA-G2-A2EC    TCGA-G2-A2EF    TCGA-G2-A2EJ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-G2-A2EK    TCGA-G2-A2EL    TCGA-G2-A2EO    TCGA-G2-A2ES    TCGA-G2-A3IB 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-G2-A3VY    TCGA-GC-A3BM    TCGA-GC-A3I6    TCGA-GC-A3WC    TCGA-GC-A3YS 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GD-A2C5    TCGA-GD-A3OP    TCGA-GD-A3OQ    TCGA-GD-A3OS    TCGA-GU-A42R 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GV-A3JV    TCGA-GV-A3JW    TCGA-GV-A3JZ    TCGA-GV-A3QF    TCGA-GV-A3QG 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GV-A3QH    TCGA-GV-A3QI    TCGA-GV-A3QK    TCGA-GV-A40E    TCGA-GV-A40G 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-H4-A2HO    TCGA-H4-A2HQ    TCGA-HQ-A2OE    TCGA-K4-A3WS    TCGA-K4-A3WU 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-K4-A3WV 
"ADC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        1      0      0      0
  ADC WILD-TYPE     42     38     27     19
D71V4, multiclass
[1] "Remove cluster labels:" "ADC MUTATED"           
clus
  ADC MUTATED ADC WILD-TYPE 
            1           126 
   TCGA-BL-A0C8    TCGA-BL-A13I    TCGA-BL-A13J    TCGA-BL-A3JM    TCGA-BT-A0S7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A0YX    TCGA-BT-A20J    TCGA-BT-A20N    TCGA-BT-A20O    TCGA-BT-A20P 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A20Q    TCGA-BT-A20R    TCGA-BT-A20T    TCGA-BT-A20U    TCGA-BT-A20V 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A20W    TCGA-BT-A20X    TCGA-BT-A2LA    TCGA-BT-A2LB    TCGA-BT-A2LD 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-BT-A3PH    TCGA-BT-A3PJ    TCGA-BT-A3PK    TCGA-BT-A42B    TCGA-BT-A42C 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-C4-A0EZ    TCGA-C4-A0F0    TCGA-C4-A0F1    TCGA-C4-A0F6    TCGA-C4-A0F7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CF-A1HR    TCGA-CF-A1HS    TCGA-CF-A27C    TCGA-CF-A3MF    TCGA-CF-A3MG 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CF-A3MH    TCGA-CF-A3MI    TCGA-CU-A0YN    TCGA-CU-A3KJ    TCGA-CU-A3QU 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-CU-A3YL    TCGA-DK-A1A3    TCGA-DK-A1A5    TCGA-DK-A1A6    TCGA-DK-A1AA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A1AB    TCGA-DK-A1AC    TCGA-DK-A1AD    TCGA-DK-A1AE    TCGA-DK-A1AF 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A1AG    TCGA-DK-A2HX    TCGA-DK-A2I1    TCGA-DK-A2I2    TCGA-DK-A2I4 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3IK    TCGA-DK-A3IL    TCGA-DK-A3IM    TCGA-DK-A3IN    TCGA-DK-A3IQ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3IT    TCGA-DK-A3IU    TCGA-DK-A3IV    TCGA-DK-A3WW    TCGA-DK-A3WX 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-DK-A3WY    TCGA-DK-A3X1    TCGA-DK-A3X2    TCGA-E5-A2PC    TCGA-E7-A3X6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-E7-A3Y1    TCGA-FD-A3B3    TCGA-FD-A3B4    TCGA-FD-A3B5    TCGA-FD-A3B6 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3B7    TCGA-FD-A3B8    TCGA-FD-A3N5    TCGA-FD-A3N6    TCGA-FD-A3NA 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3SJ    TCGA-FD-A3SL    TCGA-FD-A3SM    TCGA-FD-A3SN    TCGA-FD-A3SO 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FD-A3SP    TCGA-FD-A3SQ    TCGA-FD-A3SR    TCGA-FD-A3SS    TCGA-FJ-A3Z7 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-FJ-A3ZE    TCGA-FJ-A3ZF    TCGA-G2-A2EC    TCGA-G2-A2EF    TCGA-G2-A2EJ 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-G2-A2EK    TCGA-G2-A2EL    TCGA-G2-A2EO    TCGA-G2-A2ES    TCGA-G2-A3IB 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-G2-A3VY    TCGA-GC-A3BM    TCGA-GC-A3I6    TCGA-GC-A3WC    TCGA-GC-A3YS 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GD-A2C5    TCGA-GD-A3OP    TCGA-GD-A3OQ    TCGA-GD-A3OS    TCGA-GU-A42R 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GV-A3JV    TCGA-GV-A3JW    TCGA-GV-A3JZ    TCGA-GV-A3QF    TCGA-GV-A3QG 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-GV-A3QH    TCGA-GV-A3QI    TCGA-GV-A3QK    TCGA-GV-A40E    TCGA-GV-A40G 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-H4-A2HO    TCGA-H4-A2HQ    TCGA-HQ-A2OE    TCGA-K4-A3WS    TCGA-K4-A3WU 
"ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" "ADC WILD-TYPE" 
   TCGA-K4-A3WV 
"ADC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADC MUTATED        2      3      1
  ADC WILD-TYPE    112    170    103
D71V5, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           2           112
  CLUS_2           3           170
  CLUS_3           1           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADC MUTATED        3      1      2
  ADC WILD-TYPE    113    105    167
D71V6, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           3           113
  CLUS_2           1           105
  CLUS_3           2           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADC MUTATED        1      2      3
  ADC WILD-TYPE    118     94    174
D71V7, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           1           118
  CLUS_2           2            94
  CLUS_3           3           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADC MUTATED        0      3      1      2      0
  ADC WILD-TYPE     86     96     88     63     53
D71V8, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           0            86
  CLUS_2           3            96
  CLUS_3           1            88
  CLUS_4           2            63
  CLUS_5           0            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADC MUTATED        1      1      2      2
  ADC WILD-TYPE     92     42    125    117
D71V9, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           1            92
  CLUS_2           1            42
  CLUS_3           2           125
  CLUS_4           2           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADC MUTATED        1      1      2      2      0      0
  ADC WILD-TYPE     73     46     86     63     27     81
D71V10, multiclass
        clus
vv       ADC MUTATED ADC WILD-TYPE
  CLUS_1           1            73
  CLUS_2           1            46
  CLUS_3           2            86
  CLUS_4           2            63
  CLUS_5           0            27
  CLUS_6           0            81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = FUT5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT5 MUTATED        2      1      0      0
  FUT5 WILD-TYPE    160    136     59     34
D72V1, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            2            160
  CLUS_2            1            136
  CLUS_3            0             59
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT5 MUTATED        0      1      1      1
  FUT5 WILD-TYPE    135    111     68     78
D72V2, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            1            111
  CLUS_3            1             68
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUT5 MUTATED        1      0      0      0      0
  FUT5 WILD-TYPE     36     29     36      5     20
D72V3, multiclass
[1] "Remove cluster labels:" "FUT5 MUTATED"          
clus
  FUT5 MUTATED FUT5 WILD-TYPE 
             1            126 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A42C     TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-C4-A0F6     TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CF-A27C     TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CF-A3MI     TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CU-A3YL     TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A1AA     TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A1AE     TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A2I1     TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3IL     TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3IT     TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3WX     TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-E5-A2PC     TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3B4     TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3B8     TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SJ     TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SO     TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SR 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SS     TCGA-FJ-A3Z7     TCGA-FJ-A3ZF     TCGA-G2-A2EC 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A2EF     TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A2EO     TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A3VY     TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GC-A3YS     TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GD-A3OS     TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GV-A3JZ     TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GV-A3QI     TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-H4-A2HO     TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-K4-A3WU     TCGA-K4-A3WV 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT5 MUTATED        0      0      0      1
  FUT5 WILD-TYPE     43     38     27     18
D72V4, multiclass
[1] "Remove cluster labels:" "FUT5 MUTATED"          
clus
  FUT5 MUTATED FUT5 WILD-TYPE 
             1            126 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-BT-A42C     TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-C4-A0F6     TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CF-A27C     TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CF-A3MI     TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-CU-A3YL     TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A1AA     TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A1AE     TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A2I1     TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3IL     TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3IT     TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-DK-A3WX     TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-E5-A2PC     TCGA-E7-A3X6     TCGA-E7-A3Y1     TCGA-FD-A3B3 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3B4     TCGA-FD-A3B5     TCGA-FD-A3B6     TCGA-FD-A3B7 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3B8     TCGA-FD-A3N5     TCGA-FD-A3N6     TCGA-FD-A3NA 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SJ     TCGA-FD-A3SL     TCGA-FD-A3SM     TCGA-FD-A3SN 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SO     TCGA-FD-A3SP     TCGA-FD-A3SQ     TCGA-FD-A3SR 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-FD-A3SS     TCGA-FJ-A3Z7     TCGA-FJ-A3ZF     TCGA-G2-A2EC 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A2EF     TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A2EO     TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-G2-A3VY     TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GC-A3YS     TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GD-A3OS     TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GV-A3JZ     TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-GV-A3QI     TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-H4-A2HO     TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
    TCGA-K4-A3WU     TCGA-K4-A3WV 
"FUT5 WILD-TYPE" "FUT5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FUT5 MUTATED        1      2      0
  FUT5 WILD-TYPE    113    171    104
D72V5, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            1            113
  CLUS_2            2            171
  CLUS_3            0            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FUT5 MUTATED        1      2      0
  FUT5 WILD-TYPE    115    104    169
D72V6, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            1            115
  CLUS_2            2            104
  CLUS_3            0            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FUT5 MUTATED        1      0      2
  FUT5 WILD-TYPE    118     96    175
D72V7, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            1            118
  CLUS_2            0             96
  CLUS_3            2            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUT5 MUTATED        0      0      1      1      1
  FUT5 WILD-TYPE     86     99     88     64     52
D72V8, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            0             86
  CLUS_2            0             99
  CLUS_3            1             88
  CLUS_4            1             64
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT5 MUTATED        0      0      2      1
  FUT5 WILD-TYPE     93     43    125    118
D72V9, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            0             93
  CLUS_2            0             43
  CLUS_3            2            125
  CLUS_4            1            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FUT5 MUTATED        0      0      1      1      1      0
  FUT5 WILD-TYPE     74     47     87     64     26     81
D72V10, multiclass
        clus
vv       FUT5 MUTATED FUT5 WILD-TYPE
  CLUS_1            0             74
  CLUS_2            0             47
  CLUS_3            1             87
  CLUS_4            1             64
  CLUS_5            1             26
  CLUS_6            0             81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = AHR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHR MUTATED        9      9      4      0
  AHR WILD-TYPE    153    128     55     34
D73V1, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           9           153
  CLUS_2           9           128
  CLUS_3           4            55
  CLUS_4           0            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHR MUTATED        3      7      8      4
  AHR WILD-TYPE    132    105     61     75
D73V2, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           3           132
  CLUS_2           7           105
  CLUS_3           8            61
  CLUS_4           4            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AHR MUTATED        1      3      2      0      0
  AHR WILD-TYPE     36     26     34      5     20
D73V3, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           1            36
  CLUS_2           3            26
  CLUS_3           2            34
  CLUS_4           0             5
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHR MUTATED        1      4      0      1
  AHR WILD-TYPE     42     34     27     18
D73V4, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           1            42
  CLUS_2           4            34
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AHR MUTATED        3     15      4
  AHR WILD-TYPE    111    158    100
D73V5, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           3           111
  CLUS_2          15           158
  CLUS_3           4           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AHR MUTATED        7     10      5
  AHR WILD-TYPE    109     96    164
D73V6, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           7           109
  CLUS_2          10            96
  CLUS_3           5           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AHR MUTATED        5      5     12
  AHR WILD-TYPE    114     91    165
D73V7, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           5           114
  CLUS_2           5            91
  CLUS_3          12           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AHR MUTATED        2      4      8      5      3
  AHR WILD-TYPE     84     95     81     60     50
D73V8, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           2            84
  CLUS_2           4            95
  CLUS_3           8            81
  CLUS_4           5            60
  CLUS_5           3            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHR MUTATED        3      2     10      6
  AHR WILD-TYPE     90     41    117    113
D73V9, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           3            90
  CLUS_2           2            41
  CLUS_3          10           117
  CLUS_4           6           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AHR MUTATED        3      4      7      3      2      2
  AHR WILD-TYPE     71     43     81     62     25     79
D73V10, multiclass
        clus
vv       AHR MUTATED AHR WILD-TYPE
  CLUS_1           3            71
  CLUS_2           4            43
  CLUS_3           7            81
  CLUS_4           3            62
  CLUS_5           2            25
  CLUS_6           2            79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = THRAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        4      6      2      2
  THRAP3 WILD-TYPE    158    131     57     32
D74V1, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              4              158
  CLUS_2              6              131
  CLUS_3              2               57
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        3      5      1      5
  THRAP3 WILD-TYPE    132    107     68     74
D74V2, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              5              107
  CLUS_3              1               68
  CLUS_4              5               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRAP3 MUTATED        0      1      3      1      0
  THRAP3 WILD-TYPE     37     28     33      4     20
D74V3, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               28
  CLUS_3              3               33
  CLUS_4              1                4
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        2      2      1      0
  THRAP3 WILD-TYPE     41     36     26     19
D74V4, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              2               36
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        3      7      4
  THRAP3 WILD-TYPE    111    166    100
D74V5, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3              111
  CLUS_2              7              166
  CLUS_3              4              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        5      4      5
  THRAP3 WILD-TYPE    111    102    164
D74V6, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              5              111
  CLUS_2              4              102
  CLUS_3              5              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        4      3      7
  THRAP3 WILD-TYPE    115     93    170
D74V7, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              4              115
  CLUS_2              3               93
  CLUS_3              7              170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THRAP3 MUTATED        2      5      2      3      2
  THRAP3 WILD-TYPE     84     94     87     62     51
D74V8, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              5               94
  CLUS_3              2               87
  CLUS_4              3               62
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        3      1      5      5
  THRAP3 WILD-TYPE     90     42    122    114
D74V9, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3               90
  CLUS_2              1               42
  CLUS_3              5              122
  CLUS_4              5              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THRAP3 MUTATED        3      1      4      1      1      4
  THRAP3 WILD-TYPE     71     46     84     64     26     77
D74V10, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3               71
  CLUS_2              1               46
  CLUS_3              4               84
  CLUS_4              1               64
  CLUS_5              1               26
  CLUS_6              4               77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = TFPI2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFPI2 MUTATED        2      2      1      1
  TFPI2 WILD-TYPE    160    135     58     33
D75V1, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             2             160
  CLUS_2             2             135
  CLUS_3             1              58
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFPI2 MUTATED        3      2      0      1
  TFPI2 WILD-TYPE    132    110     69     78
D75V2, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             2             110
  CLUS_3             0              69
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFPI2 MUTATED        0      0      1      0      1
  TFPI2 WILD-TYPE     37     29     35      5     19
D75V3, multiclass
[1] "Remove cluster labels:" "TFPI2 MUTATED"         
clus
  TFPI2 MUTATED TFPI2 WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A6      TCGA-DK-A1AA 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD      TCGA-DK-A1AE 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WX      TCGA-DK-A3WY 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC      TCGA-E7-A3X6 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4      TCGA-FD-A3B5 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8      TCGA-FD-A3N5 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ      TCGA-FD-A3SL 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO      TCGA-FD-A3SP 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS      TCGA-FJ-A3Z7 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC      TCGA-G2-A2EF 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE      TCGA-G2-A3VY 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-K4-A3WV 
"TFPI2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFPI2 MUTATED        1      0      0      1
  TFPI2 WILD-TYPE     42     38     27     18
D75V4, multiclass
[1] "Remove cluster labels:" "TFPI2 MUTATED"         
clus
  TFPI2 MUTATED TFPI2 WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A6      TCGA-DK-A1AA 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD      TCGA-DK-A1AE 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WX      TCGA-DK-A3WY 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC      TCGA-E7-A3X6 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4      TCGA-FD-A3B5 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8      TCGA-FD-A3N5 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ      TCGA-FD-A3SL 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO      TCGA-FD-A3SP 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS      TCGA-FJ-A3Z7 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC      TCGA-G2-A2EF 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE      TCGA-G2-A3VY 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" "TFPI2 WILD-TYPE" 
     TCGA-K4-A3WV 
"TFPI2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TFPI2 MUTATED        2      2      2
  TFPI2 WILD-TYPE    112    171    102
D75V5, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             2             171
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TFPI2 MUTATED        1      2      3
  TFPI2 WILD-TYPE    115    104    166
D75V6, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             2             104
  CLUS_3             3             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TFPI2 MUTATED        1      1      4
  TFPI2 WILD-TYPE    118     95    173
D75V7, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             1             118
  CLUS_2             1              95
  CLUS_3             4             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFPI2 MUTATED        3      1      0      2      0
  TFPI2 WILD-TYPE     83     98     89     63     53
D75V8, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             3              83
  CLUS_2             1              98
  CLUS_3             0              89
  CLUS_4             2              63
  CLUS_5             0              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFPI2 MUTATED        4      0      1      1
  TFPI2 WILD-TYPE     89     43    126    118
D75V9, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             4              89
  CLUS_2             0              43
  CLUS_3             1             126
  CLUS_4             1             118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFPI2 MUTATED        0      0      2      1      0      3
  TFPI2 WILD-TYPE     74     47     86     64     27     78
D75V10, multiclass
        clus
vv       TFPI2 MUTATED TFPI2 WILD-TYPE
  CLUS_1             0              74
  CLUS_2             0              47
  CLUS_3             2              86
  CLUS_4             1              64
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = NPAS4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPAS4 MUTATED        3      7      1      2
  NPAS4 WILD-TYPE    159    130     58     32
D76V1, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             3             159
  CLUS_2             7             130
  CLUS_3             1              58
  CLUS_4             2              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPAS4 MUTATED        3      4      3      3
  NPAS4 WILD-TYPE    132    108     66     76
D76V2, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             4             108
  CLUS_3             3              66
  CLUS_4             3              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPAS4 MUTATED        2      2      1      0      0
  NPAS4 WILD-TYPE     35     27     35      5     20
D76V3, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              27
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPAS4 MUTATED        1      2      1      1
  NPAS4 WILD-TYPE     42     36     26     18
D76V4, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             2              36
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPAS4 MUTATED        3      7      3
  NPAS4 WILD-TYPE    111    166    101
D76V5, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             3             111
  CLUS_2             7             166
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPAS4 MUTATED        5      4      4
  NPAS4 WILD-TYPE    111    102    165
D76V6, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             5             111
  CLUS_2             4             102
  CLUS_3             4             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPAS4 MUTATED        3      5      5
  NPAS4 WILD-TYPE    116     91    172
D76V7, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             5              91
  CLUS_3             5             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPAS4 MUTATED        1      5      1      4      2
  NPAS4 WILD-TYPE     85     94     88     61     51
D76V8, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             5              94
  CLUS_3             1              88
  CLUS_4             4              61
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPAS4 MUTATED        1      2      6      4
  NPAS4 WILD-TYPE     92     41    121    115
D76V9, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             2              41
  CLUS_3             6             121
  CLUS_4             4             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPAS4 MUTATED        2      3      4      3      0      1
  NPAS4 WILD-TYPE     72     44     84     62     27     80
D76V10, multiclass
        clus
vv       NPAS4 MUTATED NPAS4 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             3              44
  CLUS_3             4              84
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = NFE2L3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L3 MUTATED        3      6      3      2
  NFE2L3 WILD-TYPE    159    131     56     32
D77V1, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              3              159
  CLUS_2              6              131
  CLUS_3              3               56
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L3 MUTATED        1     10      0      3
  NFE2L3 WILD-TYPE    134    102     69     76
D77V2, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              1              134
  CLUS_2             10              102
  CLUS_3              0               69
  CLUS_4              3               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L3 MUTATED        1      1      0      1      0
  NFE2L3 WILD-TYPE     36     28     36      4     20
D77V3, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               28
  CLUS_3              0               36
  CLUS_4              1                4
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L3 MUTATED        2      1      0      0
  NFE2L3 WILD-TYPE     41     37     27     19
D77V4, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              1               37
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L3 MUTATED        3      8      3
  NFE2L3 WILD-TYPE    111    165    101
D77V5, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              3              111
  CLUS_2              8              165
  CLUS_3              3              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L3 MUTATED        4      7      3
  NFE2L3 WILD-TYPE    112     99    166
D77V6, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              4              112
  CLUS_2              7               99
  CLUS_3              3              166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L3 MUTATED        4      3      7
  NFE2L3 WILD-TYPE    115     93    170
D77V7, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              4              115
  CLUS_2              3               93
  CLUS_3              7              170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L3 MUTATED        1      4      3      4      2
  NFE2L3 WILD-TYPE     85     95     86     61     51
D77V8, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              4               95
  CLUS_3              3               86
  CLUS_4              4               61
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L3 MUTATED        3      2      5      3
  NFE2L3 WILD-TYPE     90     41    122    116
D77V9, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              3               90
  CLUS_2              2               41
  CLUS_3              5              122
  CLUS_4              3              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L3 MUTATED        2      2      5      1      0      3
  NFE2L3 WILD-TYPE     72     45     83     64     27     78
D77V10, multiclass
        clus
vv       NFE2L3 MUTATED NFE2L3 WILD-TYPE
  CLUS_1              2               72
  CLUS_2              2               45
  CLUS_3              5               83
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              3               78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = TAF11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF11 MUTATED        3      2      2      0
  TAF11 WILD-TYPE    159    135     57     34
D78V1, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             3             159
  CLUS_2             2             135
  CLUS_3             2              57
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF11 MUTATED        5      1      0      1
  TAF11 WILD-TYPE    130    111     69     78
D78V2, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             5             130
  CLUS_2             1             111
  CLUS_3             0              69
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF11 MUTATED        0      0      1      0      0
  TAF11 WILD-TYPE     37     29     35      5     20
D78V3, multiclass
[1] "Remove cluster labels:" "TAF11 MUTATED"         
clus
  TAF11 MUTATED TAF11 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A3IK      TCGA-DK-A3IL 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF11 MUTATED        0      1      0      0
  TAF11 WILD-TYPE     43     37     27     19
D78V4, multiclass
[1] "Remove cluster labels:" "TAF11 MUTATED"         
clus
  TAF11 MUTATED TAF11 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AD 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A3IK      TCGA-DK-A3IL 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"TAF11 WILD-TYPE" "TAF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF11 MUTATED        3      1      3
  TAF11 WILD-TYPE    111    172    101
D78V5, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             3             111
  CLUS_2             1             172
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF11 MUTATED        2      1      4
  TAF11 WILD-TYPE    114    105    165
D78V6, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             2             114
  CLUS_2             1             105
  CLUS_3             4             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF11 MUTATED        3      1      3
  TAF11 WILD-TYPE    116     95    174
D78V7, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             1              95
  CLUS_3             3             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF11 MUTATED        1      3      1      1      1
  TAF11 WILD-TYPE     85     96     88     64     52
D78V8, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             3              96
  CLUS_3             1              88
  CLUS_4             1              64
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF11 MUTATED        3      1      1      2
  TAF11 WILD-TYPE     90     42    126    117
D78V9, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             3              90
  CLUS_2             1              42
  CLUS_3             1             126
  CLUS_4             2             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF11 MUTATED        2      1      1      0      0      3
  TAF11 WILD-TYPE     72     46     87     65     27     78
D78V10, multiclass
        clus
vv       TAF11 MUTATED TAF11 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             1              46
  CLUS_3             1              87
  CLUS_4             0              65
  CLUS_5             0              27
  CLUS_6             3              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = BCL2L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L1 MUTATED        0      2      0      2
  BCL2L1 WILD-TYPE    162    135     59     32
D79V1, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0              162
  CLUS_2              2              135
  CLUS_3              0               59
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L1 MUTATED        0      1      0      3
  BCL2L1 WILD-TYPE    135    111     69     76
D79V2, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0              135
  CLUS_2              1              111
  CLUS_3              0               69
  CLUS_4              3               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL2L1 MUTATED        0      0      2      0      0
  BCL2L1 WILD-TYPE     37     29     34      5     20
D79V3, multiclass
[1] "Remove cluster labels:" "BCL2L1 MUTATED"        
clus
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20O 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R       TCGA-BT-A20T 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W       TCGA-BT-A20X 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD       TCGA-BT-A3PH 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B       TCGA-BT-A42C 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1       TCGA-C4-A0F6 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS       TCGA-CF-A27C 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH       TCGA-CF-A3MI 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU       TCGA-CU-A3YL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6       TCGA-DK-A1AA 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD       TCGA-DK-A1AE 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3WC       TCGA-GC-A3YS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-K4-A3WV 
"BCL2L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L1 MUTATED        0      1      1      0
  BCL2L1 WILD-TYPE     43     37     26     19
D79V4, multiclass
[1] "Remove cluster labels:" "BCL2L1 MUTATED"        
clus
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20O 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R       TCGA-BT-A20T 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W       TCGA-BT-A20X 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD       TCGA-BT-A3PH 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B       TCGA-BT-A42C 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1       TCGA-C4-A0F6 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS       TCGA-CF-A27C 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH       TCGA-CF-A3MI 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU       TCGA-CU-A3YL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6       TCGA-DK-A1AA 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD       TCGA-DK-A1AE 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3WC       TCGA-GC-A3YS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-K4-A3WV 
"BCL2L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        0      2      2
  BCL2L1 WILD-TYPE    114    171    102
D79V5, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0              114
  CLUS_2              2              171
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        1      2      1
  BCL2L1 WILD-TYPE    115    104    168
D79V6, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              2              104
  CLUS_3              1              168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        0      1      3
  BCL2L1 WILD-TYPE    119     95    174
D79V7, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0              119
  CLUS_2              1               95
  CLUS_3              3              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL2L1 MUTATED        1      1      0      2      0
  BCL2L1 WILD-TYPE     85     98     89     63     53
D79V8, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              1               98
  CLUS_3              0               89
  CLUS_4              2               63
  CLUS_5              0               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L1 MUTATED        1      1      2      0
  BCL2L1 WILD-TYPE     92     42    125    119
D79V9, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               92
  CLUS_2              1               42
  CLUS_3              2              125
  CLUS_4              0              119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL2L1 MUTATED        0      1      1      1      0      1
  BCL2L1 WILD-TYPE     74     46     87     64     27     80
D79V10, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              1               46
  CLUS_3              1               87
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              1               80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = TRERF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        5      8      5      2
  TRERF1 WILD-TYPE    157    129     54     32
D80V1, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              5              157
  CLUS_2              8              129
  CLUS_3              5               54
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        6      7      4      4
  TRERF1 WILD-TYPE    129    105     65     75
D80V2, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              6              129
  CLUS_2              7              105
  CLUS_3              4               65
  CLUS_4              4               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRERF1 MUTATED        4      1      4      0      2
  TRERF1 WILD-TYPE     33     28     32      5     18
D80V3, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              1               28
  CLUS_3              4               32
  CLUS_4              0                5
  CLUS_5              2               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        5      2      2      2
  TRERF1 WILD-TYPE     38     36     25     17
D80V4, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              5               38
  CLUS_2              2               36
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        5      9      6
  TRERF1 WILD-TYPE    109    164     98
D80V5, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              5              109
  CLUS_2              9              164
  CLUS_3              6               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        6      7      7
  TRERF1 WILD-TYPE    110     99    162
D80V6, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              6              110
  CLUS_2              7               99
  CLUS_3              7              162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        6      5     10
  TRERF1 WILD-TYPE    113     91    167
D80V7, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              6              113
  CLUS_2              5               91
  CLUS_3             10              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRERF1 MUTATED        4      5      8      2      2
  TRERF1 WILD-TYPE     82     94     81     63     51
D80V8, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              4               82
  CLUS_2              5               94
  CLUS_3              8               81
  CLUS_4              2               63
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        3      3      7      6
  TRERF1 WILD-TYPE     90     40    120    113
D80V9, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3               90
  CLUS_2              3               40
  CLUS_3              7              120
  CLUS_4              6              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRERF1 MUTATED        5      3      6      2      0      3
  TRERF1 WILD-TYPE     69     44     82     63     27     78
D80V10, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              5               69
  CLUS_2              3               44
  CLUS_3              6               82
  CLUS_4              2               63
  CLUS_5              0               27
  CLUS_6              3               78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = CHD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD2 MUTATED        8     10      7      0
  CHD2 WILD-TYPE    154    127     52     34
D81V1, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            8            154
  CLUS_2           10            127
  CLUS_3            7             52
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD2 MUTATED       10      9      3      3
  CHD2 WILD-TYPE    125    103     66     76
D81V2, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1           10            125
  CLUS_2            9            103
  CLUS_3            3             66
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD2 MUTATED        4      3      2      0      2
  CHD2 WILD-TYPE     33     26     34      5     18
D81V3, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            4             33
  CLUS_2            3             26
  CLUS_3            2             34
  CLUS_4            0              5
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD2 MUTATED        3      5      1      2
  CHD2 WILD-TYPE     40     33     26     17
D81V4, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            5             33
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD2 MUTATED        7      9      9
  CHD2 WILD-TYPE    107    164     95
D81V5, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            7            107
  CLUS_2            9            164
  CLUS_3            9             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD2 MUTATED        7      5     13
  CHD2 WILD-TYPE    109    101    156
D81V6, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            7            109
  CLUS_2            5            101
  CLUS_3           13            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD2 MUTATED       11      5      9
  CHD2 WILD-TYPE    108     91    168
D81V7, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1           11            108
  CLUS_2            5             91
  CLUS_3            9            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD2 MUTATED        5      7      3      4      6
  CHD2 WILD-TYPE     81     92     86     61     47
D81V8, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            5             81
  CLUS_2            7             92
  CLUS_3            3             86
  CLUS_4            4             61
  CLUS_5            6             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD2 MUTATED        8      1      6     10
  CHD2 WILD-TYPE     85     42    121    109
D81V9, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            8             85
  CLUS_2            1             42
  CLUS_3            6            121
  CLUS_4           10            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHD2 MUTATED        6      1      6      4      0      8
  CHD2 WILD-TYPE     68     46     82     61     27     73
D81V10, multiclass
        clus
vv       CHD2 MUTATED CHD2 WILD-TYPE
  CLUS_1            6             68
  CLUS_2            1             46
  CLUS_3            6             82
  CLUS_4            4             61
  CLUS_5            0             27
  CLUS_6            8             73
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = USP28 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        5      4      3      1
  USP28 WILD-TYPE    157    133     56     33
D82V1, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             5             157
  CLUS_2             4             133
  CLUS_3             3              56
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        5      3      1      4
  USP28 WILD-TYPE    130    109     68     75
D82V2, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             5             130
  CLUS_2             3             109
  CLUS_3             1              68
  CLUS_4             4              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP28 MUTATED        1      0      1      1      0
  USP28 WILD-TYPE     36     29     35      4     20
D82V3, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             0              29
  CLUS_3             1              35
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        2      0      1      0
  USP28 WILD-TYPE     41     38     26     19
D82V4, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              38
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        4      7      2
  USP28 WILD-TYPE    110    166    102
D82V5, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4             110
  CLUS_2             7             166
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        4      3      6
  USP28 WILD-TYPE    112    103    163
D82V6, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4             112
  CLUS_2             3             103
  CLUS_3             6             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        3      2      8
  USP28 WILD-TYPE    116     94    169
D82V7, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             2              94
  CLUS_3             8             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP28 MUTATED        1      3      4      4      1
  USP28 WILD-TYPE     85     96     85     61     52
D82V8, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             3              96
  CLUS_3             4              85
  CLUS_4             4              61
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        2      1      5      4
  USP28 WILD-TYPE     91     42    122    115
D82V9, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             2              91
  CLUS_2             1              42
  CLUS_3             5             122
  CLUS_4             4             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP28 MUTATED        3      1      4      2      1      1
  USP28 WILD-TYPE     71     46     84     63     26     80
D82V10, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             1              46
  CLUS_3             4              84
  CLUS_4             2              63
  CLUS_5             1              26
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = GPS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPS2 MUTATED        3      5      1      1
  GPS2 WILD-TYPE    159    132     58     33
D83V1, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3            159
  CLUS_2            5            132
  CLUS_3            1             58
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPS2 MUTATED        3      3      1      3
  GPS2 WILD-TYPE    132    109     68     76
D83V2, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3            132
  CLUS_2            3            109
  CLUS_3            1             68
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPS2 MUTATED        3      0      1      0      0
  GPS2 WILD-TYPE     34     29     35      5     20
D83V3, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPS2 MUTATED        3      0      1      0
  GPS2 WILD-TYPE     40     38     26     19
D83V4, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            0             38
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPS2 MUTATED        3      5      2
  GPS2 WILD-TYPE    111    168    102
D83V5, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3            111
  CLUS_2            5            168
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPS2 MUTATED        3      4      3
  GPS2 WILD-TYPE    113    102    166
D83V6, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3            113
  CLUS_2            4            102
  CLUS_3            3            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPS2 MUTATED        4      4      2
  GPS2 WILD-TYPE    115     92    175
D83V7, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            4            115
  CLUS_2            4             92
  CLUS_3            2            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPS2 MUTATED        3      5      1      0      1
  GPS2 WILD-TYPE     83     94     88     65     52
D83V8, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            3             83
  CLUS_2            5             94
  CLUS_3            1             88
  CLUS_4            0             65
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPS2 MUTATED        2      1      4      3
  GPS2 WILD-TYPE     91     42    123    116
D83V9, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            2             91
  CLUS_2            1             42
  CLUS_3            4            123
  CLUS_4            3            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPS2 MUTATED        1      1      3      2      1      2
  GPS2 WILD-TYPE     73     46     85     63     26     79
D83V10, multiclass
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            1             46
  CLUS_3            3             85
  CLUS_4            2             63
  CLUS_5            1             26
  CLUS_6            2             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = F7 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F7 MUTATED        3      4      0      1
  F7 WILD-TYPE    159    133     59     33
D84V1, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          3          159
  CLUS_2          4          133
  CLUS_3          0           59
  CLUS_4          1           33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F7 MUTATED        2      4      0      2
  F7 WILD-TYPE    133    108     69     77
D84V2, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          2          133
  CLUS_2          4          108
  CLUS_3          0           69
  CLUS_4          2           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F7 MUTATED        1      0      0      0      0
  F7 WILD-TYPE     36     29     36      5     20
D84V3, multiclass
[1] "Remove cluster labels:" "F7 MUTATED"            
clus
  F7 MUTATED F7 WILD-TYPE 
           1          126 
  TCGA-BL-A0C8   TCGA-BL-A13I   TCGA-BL-A13J   TCGA-BL-A3JM   TCGA-BT-A0S7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A0YX   TCGA-BT-A20J   TCGA-BT-A20N   TCGA-BT-A20O   TCGA-BT-A20P 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A20Q   TCGA-BT-A20R   TCGA-BT-A20T   TCGA-BT-A20U   TCGA-BT-A20V 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A20W   TCGA-BT-A20X   TCGA-BT-A2LA   TCGA-BT-A2LB   TCGA-BT-A2LD 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A3PH   TCGA-BT-A3PJ   TCGA-BT-A3PK   TCGA-BT-A42B   TCGA-BT-A42C 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-C4-A0EZ   TCGA-C4-A0F0   TCGA-C4-A0F1   TCGA-C4-A0F6   TCGA-C4-A0F7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CF-A1HR   TCGA-CF-A1HS   TCGA-CF-A27C   TCGA-CF-A3MF   TCGA-CF-A3MG 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CF-A3MH   TCGA-CF-A3MI   TCGA-CU-A0YN   TCGA-CU-A3KJ   TCGA-CU-A3QU 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CU-A3YL   TCGA-DK-A1A3   TCGA-DK-A1A5   TCGA-DK-A1A6   TCGA-DK-A1AA 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A1AB   TCGA-DK-A1AC   TCGA-DK-A1AD   TCGA-DK-A1AE   TCGA-DK-A1AF 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A1AG   TCGA-DK-A2HX   TCGA-DK-A2I1   TCGA-DK-A2I2   TCGA-DK-A2I4 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3IK   TCGA-DK-A3IL   TCGA-DK-A3IM   TCGA-DK-A3IN   TCGA-DK-A3IQ 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3IT   TCGA-DK-A3IU   TCGA-DK-A3IV   TCGA-DK-A3WW   TCGA-DK-A3WX 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3WY   TCGA-DK-A3X1   TCGA-E5-A2PC   TCGA-E7-A3X6   TCGA-E7-A3Y1 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3B3   TCGA-FD-A3B4   TCGA-FD-A3B5   TCGA-FD-A3B6   TCGA-FD-A3B7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3B8   TCGA-FD-A3N5   TCGA-FD-A3N6   TCGA-FD-A3NA   TCGA-FD-A3SJ 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3SL   TCGA-FD-A3SM   TCGA-FD-A3SN   TCGA-FD-A3SO   TCGA-FD-A3SP 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3SQ   TCGA-FD-A3SR   TCGA-FD-A3SS   TCGA-FJ-A3Z7   TCGA-FJ-A3ZE 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FJ-A3ZF   TCGA-G2-A2EC   TCGA-G2-A2EF   TCGA-G2-A2EJ   TCGA-G2-A2EK 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-G2-A2EL   TCGA-G2-A2EO   TCGA-G2-A2ES   TCGA-G2-A3IB   TCGA-G2-A3IE 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-G2-A3VY   TCGA-GC-A3BM   TCGA-GC-A3I6   TCGA-GC-A3WC   TCGA-GC-A3YS 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GD-A2C5   TCGA-GD-A3OP   TCGA-GD-A3OQ   TCGA-GD-A3OS   TCGA-GU-A42R 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GV-A3JV   TCGA-GV-A3JW   TCGA-GV-A3JZ   TCGA-GV-A3QF   TCGA-GV-A3QG 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GV-A3QH   TCGA-GV-A3QI   TCGA-GV-A3QK   TCGA-GV-A40E   TCGA-GV-A40G 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-H4-A2HO   TCGA-H4-A2HQ   TCGA-HQ-A2OE   TCGA-K4-A3WS   TCGA-K4-A3WU 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-K4-A3WV 
"F7 WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F7 MUTATED        0      0      1      0
  F7 WILD-TYPE     43     38     26     19
D84V4, multiclass
[1] "Remove cluster labels:" "F7 MUTATED"            
clus
  F7 MUTATED F7 WILD-TYPE 
           1          126 
  TCGA-BL-A0C8   TCGA-BL-A13I   TCGA-BL-A13J   TCGA-BL-A3JM   TCGA-BT-A0S7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A0YX   TCGA-BT-A20J   TCGA-BT-A20N   TCGA-BT-A20O   TCGA-BT-A20P 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A20Q   TCGA-BT-A20R   TCGA-BT-A20T   TCGA-BT-A20U   TCGA-BT-A20V 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A20W   TCGA-BT-A20X   TCGA-BT-A2LA   TCGA-BT-A2LB   TCGA-BT-A2LD 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-BT-A3PH   TCGA-BT-A3PJ   TCGA-BT-A3PK   TCGA-BT-A42B   TCGA-BT-A42C 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-C4-A0EZ   TCGA-C4-A0F0   TCGA-C4-A0F1   TCGA-C4-A0F6   TCGA-C4-A0F7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CF-A1HR   TCGA-CF-A1HS   TCGA-CF-A27C   TCGA-CF-A3MF   TCGA-CF-A3MG 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CF-A3MH   TCGA-CF-A3MI   TCGA-CU-A0YN   TCGA-CU-A3KJ   TCGA-CU-A3QU 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-CU-A3YL   TCGA-DK-A1A3   TCGA-DK-A1A5   TCGA-DK-A1A6   TCGA-DK-A1AA 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A1AB   TCGA-DK-A1AC   TCGA-DK-A1AD   TCGA-DK-A1AE   TCGA-DK-A1AF 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A1AG   TCGA-DK-A2HX   TCGA-DK-A2I1   TCGA-DK-A2I2   TCGA-DK-A2I4 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3IK   TCGA-DK-A3IL   TCGA-DK-A3IM   TCGA-DK-A3IN   TCGA-DK-A3IQ 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3IT   TCGA-DK-A3IU   TCGA-DK-A3IV   TCGA-DK-A3WW   TCGA-DK-A3WX 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-DK-A3WY   TCGA-DK-A3X1   TCGA-E5-A2PC   TCGA-E7-A3X6   TCGA-E7-A3Y1 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3B3   TCGA-FD-A3B4   TCGA-FD-A3B5   TCGA-FD-A3B6   TCGA-FD-A3B7 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3B8   TCGA-FD-A3N5   TCGA-FD-A3N6   TCGA-FD-A3NA   TCGA-FD-A3SJ 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3SL   TCGA-FD-A3SM   TCGA-FD-A3SN   TCGA-FD-A3SO   TCGA-FD-A3SP 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FD-A3SQ   TCGA-FD-A3SR   TCGA-FD-A3SS   TCGA-FJ-A3Z7   TCGA-FJ-A3ZE 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-FJ-A3ZF   TCGA-G2-A2EC   TCGA-G2-A2EF   TCGA-G2-A2EJ   TCGA-G2-A2EK 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-G2-A2EL   TCGA-G2-A2EO   TCGA-G2-A2ES   TCGA-G2-A3IB   TCGA-G2-A3IE 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-G2-A3VY   TCGA-GC-A3BM   TCGA-GC-A3I6   TCGA-GC-A3WC   TCGA-GC-A3YS 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GD-A2C5   TCGA-GD-A3OP   TCGA-GD-A3OQ   TCGA-GD-A3OS   TCGA-GU-A42R 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GV-A3JV   TCGA-GV-A3JW   TCGA-GV-A3JZ   TCGA-GV-A3QF   TCGA-GV-A3QG 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-GV-A3QH   TCGA-GV-A3QI   TCGA-GV-A3QK   TCGA-GV-A40E   TCGA-GV-A40G 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-H4-A2HO   TCGA-H4-A2HQ   TCGA-HQ-A2OE   TCGA-K4-A3WS   TCGA-K4-A3WU 
"F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" "F7 WILD-TYPE" 
  TCGA-K4-A3WV 
"F7 WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F7 MUTATED        3      3      2
  F7 WILD-TYPE    111    170    102
D84V5, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          3          111
  CLUS_2          3          170
  CLUS_3          2          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F7 MUTATED        1      2      5
  F7 WILD-TYPE    115    104    164
D84V6, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          1          115
  CLUS_2          2          104
  CLUS_3          5          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F7 MUTATED        2      1      4
  F7 WILD-TYPE    117     95    173
D84V7, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          2          117
  CLUS_2          1           95
  CLUS_3          4          173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F7 MUTATED        4      1      2      0      0
  F7 WILD-TYPE     82     98     87     65     53
D84V8, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          4           82
  CLUS_2          1           98
  CLUS_3          2           87
  CLUS_4          0           65
  CLUS_5          0           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F7 MUTATED        1      0      6      0
  F7 WILD-TYPE     92     43    121    119
D84V9, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          1           92
  CLUS_2          0           43
  CLUS_3          6          121
  CLUS_4          0          119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  F7 MUTATED        1      0      4      0      0      2
  F7 WILD-TYPE     73     47     84     65     27     79
D84V10, multiclass
        clus
vv       F7 MUTATED F7 WILD-TYPE
  CLUS_1          1           73
  CLUS_2          0           47
  CLUS_3          4           84
  CLUS_4          0           65
  CLUS_5          0           27
  CLUS_6          2           79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = IRX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        1      4      1      1
  IRX4 WILD-TYPE    161    133     58     33
D85V1, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1            161
  CLUS_2            4            133
  CLUS_3            1             58
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        1      3      1      3
  IRX4 WILD-TYPE    134    109     68     76
D85V2, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            3            109
  CLUS_3            1             68
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        0      1      1      0      1
  IRX4 WILD-TYPE     37     28     35      5     19
D85V3, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            1             28
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        0      1      1      1
  IRX4 WILD-TYPE     43     37     26     18
D85V4, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            0             43
  CLUS_2            1             37
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      3      4
  IRX4 WILD-TYPE    113    170    100
D85V5, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1            113
  CLUS_2            3            170
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        3      1      4
  IRX4 WILD-TYPE    113    105    165
D85V6, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            3            113
  CLUS_2            1            105
  CLUS_3            4            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        2      1      5
  IRX4 WILD-TYPE    117     95    172
D85V7, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            2            117
  CLUS_2            1             95
  CLUS_3            5            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX4 MUTATED        1      1      3      2      1
  IRX4 WILD-TYPE     85     98     86     63     52
D85V8, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            1             98
  CLUS_3            3             86
  CLUS_4            2             63
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        2      1      3      2
  IRX4 WILD-TYPE     91     42    124    117
D85V9, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            2             91
  CLUS_2            1             42
  CLUS_3            3            124
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRX4 MUTATED        1      1      3      1      0      2
  IRX4 WILD-TYPE     73     46     85     64     27     79
D85V10, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            1             46
  CLUS_3            3             85
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            2             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = HSP90AA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        6     10      3      3
  HSP90AA1 WILD-TYPE    156    127     56     31
D86V1, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                6                156
  CLUS_2               10                127
  CLUS_3                3                 56
  CLUS_4                3                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        8      6      3      5
  HSP90AA1 WILD-TYPE    127    106     66     74
D86V2, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                8                127
  CLUS_2                6                106
  CLUS_3                3                 66
  CLUS_4                5                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        0      4      3      0      0
  HSP90AA1 WILD-TYPE     37     25     33      5     20
D86V3, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                4                 25
  CLUS_3                3                 33
  CLUS_4                0                  5
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        0      5      2      0
  HSP90AA1 WILD-TYPE     43     33     25     19
D86V4, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                5                 33
  CLUS_3                2                 25
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        6      9      7
  HSP90AA1 WILD-TYPE    108    164     97
D86V5, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                6                108
  CLUS_2                9                164
  CLUS_3                7                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        5      6     11
  HSP90AA1 WILD-TYPE    111    100    158
D86V6, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                5                111
  CLUS_2                6                100
  CLUS_3               11                158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        4     10      8
  HSP90AA1 WILD-TYPE    115     86    169
D86V7, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                4                115
  CLUS_2               10                 86
  CLUS_3                8                169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        2      9      3      6      2
  HSP90AA1 WILD-TYPE     84     90     86     59     51
D86V8, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                9                 90
  CLUS_3                3                 86
  CLUS_4                6                 59
  CLUS_5                2                 51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        5      2      8      7
  HSP90AA1 WILD-TYPE     88     41    119    112
D86V9, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                5                 88
  CLUS_2                2                 41
  CLUS_3                8                119
  CLUS_4                7                112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSP90AA1 MUTATED        3      2      6      5      1      5
  HSP90AA1 WILD-TYPE     71     45     82     60     26     76
D86V10, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                 71
  CLUS_2                2                 45
  CLUS_3                6                 82
  CLUS_4                5                 60
  CLUS_5                1                 26
  CLUS_6                5                 76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = TTYH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTYH1 MUTATED        3      2      2      0
  TTYH1 WILD-TYPE    159    135     57     34
D87V1, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             3             159
  CLUS_2             2             135
  CLUS_3             2              57
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTYH1 MUTATED        4      1      1      1
  TTYH1 WILD-TYPE    131    111     68     78
D87V2, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             4             131
  CLUS_2             1             111
  CLUS_3             1              68
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTYH1 MUTATED        0      1      3      0      0
  TTYH1 WILD-TYPE     37     28     33      5     20
D87V3, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              28
  CLUS_3             3              33
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTYH1 MUTATED        0      2      2      0
  TTYH1 WILD-TYPE     43     36     25     19
D87V4, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             0              43
  CLUS_2             2              36
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTYH1 MUTATED        4      1      2
  TTYH1 WILD-TYPE    110    172    102
D87V5, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             4             110
  CLUS_2             1             172
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTYH1 MUTATED        2      0      5
  TTYH1 WILD-TYPE    114    106    164
D87V6, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             2             114
  CLUS_2             0             106
  CLUS_3             5             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTYH1 MUTATED        4      2      1
  TTYH1 WILD-TYPE    115     94    176
D87V7, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             4             115
  CLUS_2             2              94
  CLUS_3             1             176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTYH1 MUTATED        4      0      0      1      2
  TTYH1 WILD-TYPE     82     99     89     64     51
D87V8, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             0              99
  CLUS_3             0              89
  CLUS_4             1              64
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTYH1 MUTATED        1      0      0      5
  TTYH1 WILD-TYPE     92     43    127    114
D87V9, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             0              43
  CLUS_3             0             127
  CLUS_4             5             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTYH1 MUTATED        2      0      0      3      0      1
  TTYH1 WILD-TYPE     72     47     88     62     27     80
D87V10, multiclass
        clus
vv       TTYH1 MUTATED TTYH1 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             0              47
  CLUS_3             0              88
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = IL10RB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL10RB MUTATED        1      4      2      0
  IL10RB WILD-TYPE    161    133     57     34
D88V1, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              1              161
  CLUS_2              4              133
  CLUS_3              2               57
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL10RB MUTATED        3      1      1      2
  IL10RB WILD-TYPE    132    111     68     77
D88V2, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              3              132
  CLUS_2              1              111
  CLUS_3              1               68
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL10RB MUTATED        0      0      3      0      1
  IL10RB WILD-TYPE     37     29     33      5     19
D88V3, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              0               37
  CLUS_2              0               29
  CLUS_3              3               33
  CLUS_4              0                5
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL10RB MUTATED        2      1      1      0
  IL10RB WILD-TYPE     41     37     26     19
D88V4, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              2               41
  CLUS_2              1               37
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL10RB MUTATED        4      1      2
  IL10RB WILD-TYPE    110    172    102
D88V5, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              4              110
  CLUS_2              1              172
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL10RB MUTATED        2      1      4
  IL10RB WILD-TYPE    114    105    165
D88V6, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              2              114
  CLUS_2              1              105
  CLUS_3              4              165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL10RB MUTATED        2      2      3
  IL10RB WILD-TYPE    117     94    174
D88V7, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              2              117
  CLUS_2              2               94
  CLUS_3              3              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL10RB MUTATED        1      1      3      1      1
  IL10RB WILD-TYPE     85     98     86     64     52
D88V8, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              1               85
  CLUS_2              1               98
  CLUS_3              3               86
  CLUS_4              1               64
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL10RB MUTATED        4      0      1      2
  IL10RB WILD-TYPE     89     43    126    117
D88V9, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              4               89
  CLUS_2              0               43
  CLUS_3              1              126
  CLUS_4              2              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL10RB MUTATED        1      0      3      1      0      2
  IL10RB WILD-TYPE     73     47     85     64     27     79
D88V10, multiclass
        clus
vv       IL10RB MUTATED IL10RB WILD-TYPE
  CLUS_1              1               73
  CLUS_2              0               47
  CLUS_3              3               85
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = THSD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD4 MUTATED        6      3      1      0
  THSD4 WILD-TYPE    156    134     58     34
D89V1, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             6             156
  CLUS_2             3             134
  CLUS_3             1              58
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD4 MUTATED        3      3      1      3
  THSD4 WILD-TYPE    132    109     68     76
D89V2, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             3             109
  CLUS_3             1              68
  CLUS_4             3              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD4 MUTATED        2      1      1      0      0
  THSD4 WILD-TYPE     35     28     35      5     20
D89V3, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              28
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD4 MUTATED        2      0      1      1
  THSD4 WILD-TYPE     41     38     26     18
D89V4, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              38
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THSD4 MUTATED        2      6      2
  THSD4 WILD-TYPE    112    167    102
D89V5, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             6             167
  CLUS_3             2             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THSD4 MUTATED        1      4      5
  THSD4 WILD-TYPE    115    102    164
D89V6, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             4             102
  CLUS_3             5             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THSD4 MUTATED        3      0      7
  THSD4 WILD-TYPE    116     96    170
D89V7, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             3             116
  CLUS_2             0              96
  CLUS_3             7             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD4 MUTATED        2      1      3      2      2
  THSD4 WILD-TYPE     84     98     86     63     51
D89V8, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             1              98
  CLUS_3             3              86
  CLUS_4             2              63
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD4 MUTATED        2      0      5      3
  THSD4 WILD-TYPE     91     43    122    116
D89V9, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             2              91
  CLUS_2             0              43
  CLUS_3             5             122
  CLUS_4             3             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THSD4 MUTATED        3      0      5      0      0      2
  THSD4 WILD-TYPE     71     47     83     65     27     79
D89V10, multiclass
        clus
vv       THSD4 MUTATED THSD4 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             0              47
  CLUS_3             5              83
  CLUS_4             0              65
  CLUS_5             0              27
  CLUS_6             2              79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DDX3X MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        8      4      3      0
  DDX3X WILD-TYPE    154    133     56     34
D90V1, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             8             154
  CLUS_2             4             133
  CLUS_3             3              56
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        6      6      2      1
  DDX3X WILD-TYPE    129    106     67     78
D90V2, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             6             129
  CLUS_2             6             106
  CLUS_3             2              67
  CLUS_4             1              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX3X MUTATED        2      1      1      0      0
  DDX3X WILD-TYPE     35     28     35      5     20
D90V3, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2              35
  CLUS_2             1              28
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        2      2      0      0
  DDX3X WILD-TYPE     41     36     27     19
D90V4, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2              41
  CLUS_2             2              36
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        4      7      4
  DDX3X WILD-TYPE    110    166    100
D90V5, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4             110
  CLUS_2             7             166
  CLUS_3             4             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        5      3      7
  DDX3X WILD-TYPE    111    103    162
D90V6, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             5             111
  CLUS_2             3             103
  CLUS_3             7             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        4      4      7
  DDX3X WILD-TYPE    115     92    170
D90V7, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4             115
  CLUS_2             4              92
  CLUS_3             7             170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX3X MUTATED        6      4      3      1      1
  DDX3X WILD-TYPE     80     95     86     64     52
D90V8, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             6              80
  CLUS_2             4              95
  CLUS_3             3              86
  CLUS_4             1              64
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        6      2      4      2
  DDX3X WILD-TYPE     87     41    123    117
D90V9, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             6              87
  CLUS_2             2              41
  CLUS_3             4             123
  CLUS_4             2             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX3X MUTATED        1      2      4      2      0      5
  DDX3X WILD-TYPE     73     45     84     63     27     76
D90V10, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             1              73
  CLUS_2             2              45
  CLUS_3             4              84
  CLUS_4             2              63
  CLUS_5             0              27
  CLUS_6             5              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DGKG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKG MUTATED        3      5      6      0
  DGKG WILD-TYPE    159    132     53     34
D91V1, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            3            159
  CLUS_2            5            132
  CLUS_3            6             53
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKG MUTATED        5      6      0      3
  DGKG WILD-TYPE    130    106     69     76
D91V2, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            5            130
  CLUS_2            6            106
  CLUS_3            0             69
  CLUS_4            3             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKG MUTATED        0      0      2      0      1
  DGKG WILD-TYPE     37     29     34      5     19
D91V3, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            0             37
  CLUS_2            0             29
  CLUS_3            2             34
  CLUS_4            0              5
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKG MUTATED        0      0      2      1
  DGKG WILD-TYPE     43     38     25     18
D91V4, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            0             43
  CLUS_2            0             38
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKG MUTATED        5      6      3
  DGKG WILD-TYPE    109    167    101
D91V5, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            5            109
  CLUS_2            6            167
  CLUS_3            3            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKG MUTATED        5      3      6
  DGKG WILD-TYPE    111    103    163
D91V6, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            5            111
  CLUS_2            3            103
  CLUS_3            6            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKG MUTATED        1      4      9
  DGKG WILD-TYPE    118     92    168
D91V7, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            1            118
  CLUS_2            4             92
  CLUS_3            9            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKG MUTATED        5      4      2      3      0
  DGKG WILD-TYPE     81     95     87     62     53
D91V8, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            5             81
  CLUS_2            4             95
  CLUS_3            2             87
  CLUS_4            3             62
  CLUS_5            0             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKG MUTATED        2      1      7      2
  DGKG WILD-TYPE     91     42    120    117
D91V9, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            2             91
  CLUS_2            1             42
  CLUS_3            7            120
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGKG MUTATED        0      1      7      1      0      3
  DGKG WILD-TYPE     74     46     81     64     27     78
D91V10, multiclass
        clus
vv       DGKG MUTATED DGKG WILD-TYPE
  CLUS_1            0             74
  CLUS_2            1             46
  CLUS_3            7             81
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            3             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = TAS2R9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R9 MUTATED        2      0      3      1
  TAS2R9 WILD-TYPE    160    137     56     33
D92V1, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              2              160
  CLUS_2              0              137
  CLUS_3              3               56
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R9 MUTATED        2      0      2      2
  TAS2R9 WILD-TYPE    133    112     67     77
D92V2, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              2              133
  CLUS_2              0              112
  CLUS_3              2               67
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R9 MUTATED        1      1      0      0      0
  TAS2R9 WILD-TYPE     36     28     36      5     20
D92V3, multiclass
[1] "Remove cluster labels:" "TAS2R9 MUTATED"        
clus
  TAS2R9 MUTATED TAS2R9 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZF       TCGA-G2-A2EC       TCGA-G2-A2EF 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL       TCGA-G2-A2EO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-K4-A3WV 
"TAS2R9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R9 MUTATED        0      1      0      1
  TAS2R9 WILD-TYPE     43     37     27     18
D92V4, multiclass
[1] "Remove cluster labels:" "TAS2R9 MUTATED"        
clus
  TAS2R9 MUTATED TAS2R9 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZF       TCGA-G2-A2EC       TCGA-G2-A2EF 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL       TCGA-G2-A2EO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" "TAS2R9 WILD-TYPE" 
      TCGA-K4-A3WV 
"TAS2R9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R9 MUTATED        2      4      0
  TAS2R9 WILD-TYPE    112    169    104
D92V5, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              2              112
  CLUS_2              4              169
  CLUS_3              0              104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R9 MUTATED        2      2      2
  TAS2R9 WILD-TYPE    114    104    167
D92V6, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              2              114
  CLUS_2              2              104
  CLUS_3              2              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R9 MUTATED        2      0      4
  TAS2R9 WILD-TYPE    117     96    173
D92V7, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              2              117
  CLUS_2              0               96
  CLUS_3              4              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R9 MUTATED        1      1      2      1      1
  TAS2R9 WILD-TYPE     85     98     87     64     52
D92V8, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              1               98
  CLUS_3              2               87
  CLUS_4              1               64
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R9 MUTATED        1      0      3      2
  TAS2R9 WILD-TYPE     92     43    124    117
D92V9, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              1               92
  CLUS_2              0               43
  CLUS_3              3              124
  CLUS_4              2              117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R9 MUTATED        1      0      3      1      0      1
  TAS2R9 WILD-TYPE     73     47     85     64     27     80
D92V10, multiclass
        clus
vv       TAS2R9 MUTATED TAS2R9 WILD-TYPE
  CLUS_1              1               73
  CLUS_2              0               47
  CLUS_3              3               85
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              1               80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = COL7A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL7A1 MUTATED       14     13      1      2
  COL7A1 WILD-TYPE    148    124     58     32
D93V1, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1             14              148
  CLUS_2             13              124
  CLUS_3              1               58
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL7A1 MUTATED        9     11      3      7
  COL7A1 WILD-TYPE    126    101     66     72
D93V2, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              9              126
  CLUS_2             11              101
  CLUS_3              3               66
  CLUS_4              7               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL7A1 MUTATED        4      3      3      1      3
  COL7A1 WILD-TYPE     33     26     33      4     17
D93V3, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              4               33
  CLUS_2              3               26
  CLUS_3              3               33
  CLUS_4              1                4
  CLUS_5              3               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL7A1 MUTATED        4      2      5      3
  COL7A1 WILD-TYPE     39     36     22     16
D93V4, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              4               39
  CLUS_2              2               36
  CLUS_3              5               22
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL7A1 MUTATED        8     13      9
  COL7A1 WILD-TYPE    106    160     95
D93V5, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              8              106
  CLUS_2             13              160
  CLUS_3              9               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL7A1 MUTATED       13      6     11
  COL7A1 WILD-TYPE    103    100    158
D93V6, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1             13              103
  CLUS_2              6              100
  CLUS_3             11              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL7A1 MUTATED        6     11     13
  COL7A1 WILD-TYPE    113     85    164
D93V7, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              6              113
  CLUS_2             11               85
  CLUS_3             13              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL7A1 MUTATED        9     10      4      5      2
  COL7A1 WILD-TYPE     77     89     85     60     51
D93V8, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              9               77
  CLUS_2             10               89
  CLUS_3              4               85
  CLUS_4              5               60
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL7A1 MUTATED       10      4      9      7
  COL7A1 WILD-TYPE     83     39    118    112
D93V9, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1             10               83
  CLUS_2              4               39
  CLUS_3              9              118
  CLUS_4              7              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL7A1 MUTATED        3      5      7      7      1      7
  COL7A1 WILD-TYPE     71     42     81     58     26     74
D93V10, multiclass
        clus
vv       COL7A1 MUTATED COL7A1 WILD-TYPE
  CLUS_1              3               71
  CLUS_2              5               42
  CLUS_3              7               81
  CLUS_4              7               58
  CLUS_5              1               26
  CLUS_6              7               74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = ZNF513 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        4      5      0      2
  ZNF513 WILD-TYPE    158    132     59     32
D94V1, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              4              158
  CLUS_2              5              132
  CLUS_3              0               59
  CLUS_4              2               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        3      4      2      2
  ZNF513 WILD-TYPE    132    108     67     77
D94V2, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3              132
  CLUS_2              4              108
  CLUS_3              2               67
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF513 MUTATED        2      0      2      1      1
  ZNF513 WILD-TYPE     35     29     34      4     19
D94V3, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              2               35
  CLUS_2              0               29
  CLUS_3              2               34
  CLUS_4              1                4
  CLUS_5              1               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        3      1      1      1
  ZNF513 WILD-TYPE     40     37     26     18
D94V4, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              1               37
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        4      6      1
  ZNF513 WILD-TYPE    110    167    103
D94V5, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              4              110
  CLUS_2              6              167
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        4      4      3
  ZNF513 WILD-TYPE    112    102    166
D94V6, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              4              112
  CLUS_2              4              102
  CLUS_3              3              166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        3      3      5
  ZNF513 WILD-TYPE    116     93    172
D94V7, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3              116
  CLUS_2              3               93
  CLUS_3              5              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF513 MUTATED        2      3      1      3      2
  ZNF513 WILD-TYPE     84     96     88     62     51
D94V8, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              3               96
  CLUS_3              1               88
  CLUS_4              3               62
  CLUS_5              2               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        2      1      5      3
  ZNF513 WILD-TYPE     91     42    122    116
D94V9, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              2               91
  CLUS_2              1               42
  CLUS_3              5              122
  CLUS_4              3              116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF513 MUTATED        2      1      5      1      0      2
  ZNF513 WILD-TYPE     72     46     83     64     27     79
D94V10, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              2               72
  CLUS_2              1               46
  CLUS_3              5               83
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = ACSL5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSL5 MUTATED        3      3      0      0
  ACSL5 WILD-TYPE    159    134     59     34
D95V1, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             3             159
  CLUS_2             3             134
  CLUS_3             0              59
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSL5 MUTATED        1      2      1      2
  ACSL5 WILD-TYPE    134    110     68     77
D95V2, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             2             110
  CLUS_3             1              68
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSL5 MUTATED        1      0      0      0      0
  ACSL5 WILD-TYPE     36     29     36      5     20
D95V3, multiclass
[1] "Remove cluster labels:" "ACSL5 MUTATED"         
clus
  ACSL5 MUTATED ACSL5 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AD      TCGA-DK-A1AE 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSL5 MUTATED        0      0      1      0
  ACSL5 WILD-TYPE     43     38     26     19
D95V4, multiclass
[1] "Remove cluster labels:" "ACSL5 MUTATED"         
clus
  ACSL5 MUTATED ACSL5 WILD-TYPE 
              1             126 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AD      TCGA-DK-A1AE 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-G2-A3VY      TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GC-A3YS      TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GD-A3OS      TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GV-A3JZ      TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-GV-A3QI      TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-H4-A2HO      TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
     TCGA-K4-A3WU      TCGA-K4-A3WV 
"ACSL5 WILD-TYPE" "ACSL5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSL5 MUTATED        2      4      0
  ACSL5 WILD-TYPE    112    169    104
D95V5, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             4             169
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSL5 MUTATED        2      4      0
  ACSL5 WILD-TYPE    114    102    169
D95V6, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             2             114
  CLUS_2             4             102
  CLUS_3             0             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSL5 MUTATED        0      2      4
  ACSL5 WILD-TYPE    119     94    173
D95V7, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             0             119
  CLUS_2             2              94
  CLUS_3             4             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSL5 MUTATED        0      2      1      3      0
  ACSL5 WILD-TYPE     86     97     88     62     53
D95V8, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             2              97
  CLUS_3             1              88
  CLUS_4             3              62
  CLUS_5             0              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSL5 MUTATED        0      1      4      1
  ACSL5 WILD-TYPE     93     42    123    118
D95V9, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             0              93
  CLUS_2             1              42
  CLUS_3             4             123
  CLUS_4             1             118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACSL5 MUTATED        0      1      3      1      1      0
  ACSL5 WILD-TYPE     74     46     85     64     26     81
D95V10, multiclass
        clus
vv       ACSL5 MUTATED ACSL5 WILD-TYPE
  CLUS_1             0              74
  CLUS_2             1              46
  CLUS_3             3              85
  CLUS_4             1              64
  CLUS_5             1              26
  CLUS_6             0              81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = C18ORF8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF8 MUTATED        2      2      1      1
  C18ORF8 WILD-TYPE    160    135     58     33
D96V1, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               2               160
  CLUS_2               2               135
  CLUS_3               1                58
  CLUS_4               1                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF8 MUTATED        0      3      2      1
  C18ORF8 WILD-TYPE    135    109     67     78
D96V2, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               0               135
  CLUS_2               3               109
  CLUS_3               2                67
  CLUS_4               1                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF8 MUTATED        0      0      1      1      0
  C18ORF8 WILD-TYPE     37     29     35      4     20
D96V3, multiclass
[1] "Remove cluster labels:" "C18ORF8 MUTATED"       
clus
  C18ORF8 MUTATED C18ORF8 WILD-TYPE 
                2               125 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A3PJ        TCGA-BT-A3PK        TCGA-BT-A42B        TCGA-BT-A42C 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F1        TCGA-C4-A0F6 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-C4-A0F7        TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-CF-A3MF        TCGA-CF-A3MG        TCGA-CF-A3MH        TCGA-CF-A3MI 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-CU-A0YN        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1AA 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A3IK        TCGA-DK-A3IL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ        TCGA-DK-A3IT 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3IU        TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E7-A3X6 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-E7-A3Y1        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FJ-A3Z7 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-G2-A2EC        TCGA-G2-A2EF 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3WC        TCGA-GC-A3YS 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GU-A42R        TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JZ 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QH        TCGA-GV-A3QI 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-H4-A2HQ        TCGA-HQ-A2OE        TCGA-K4-A3WS        TCGA-K4-A3WU 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-K4-A3WV 
"C18ORF8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF8 MUTATED        1      0      1      0
  C18ORF8 WILD-TYPE     42     38     26     19
D96V4, multiclass
[1] "Remove cluster labels:" "C18ORF8 MUTATED"       
clus
  C18ORF8 MUTATED C18ORF8 WILD-TYPE 
                2               125 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-BT-A3PJ        TCGA-BT-A3PK        TCGA-BT-A42B        TCGA-BT-A42C 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F1        TCGA-C4-A0F6 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-C4-A0F7        TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-CF-A3MF        TCGA-CF-A3MG        TCGA-CF-A3MH        TCGA-CF-A3MI 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-CU-A0YN        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1AA 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A3IK        TCGA-DK-A3IL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ        TCGA-DK-A3IT 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3IU        TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E7-A3X6 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-E7-A3Y1        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FJ-A3Z7 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-G2-A2EC        TCGA-G2-A2EF 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3WC        TCGA-GC-A3YS 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GU-A42R        TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JZ 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QH        TCGA-GV-A3QI 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-H4-A2HQ        TCGA-HQ-A2OE        TCGA-K4-A3WS        TCGA-K4-A3WU 
"C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" "C18ORF8 WILD-TYPE" 
       TCGA-K4-A3WV 
"C18ORF8 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C18ORF8 MUTATED        1      3      2
  C18ORF8 WILD-TYPE    113    170    102
D96V5, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               1               113
  CLUS_2               3               170
  CLUS_3               2               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C18ORF8 MUTATED        3      1      2
  C18ORF8 WILD-TYPE    113    105    167
D96V6, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               3               113
  CLUS_2               1               105
  CLUS_3               2               167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C18ORF8 MUTATED        2      1      3
  C18ORF8 WILD-TYPE    117     95    174
D96V7, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               2               117
  CLUS_2               1                95
  CLUS_3               3               174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C18ORF8 MUTATED        2      1      1      0      2
  C18ORF8 WILD-TYPE     84     98     88     65     51
D96V8, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               1                98
  CLUS_3               1                88
  CLUS_4               0                65
  CLUS_5               2                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF8 MUTATED        1      1      2      2
  C18ORF8 WILD-TYPE     92     42    125    117
D96V9, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               1                92
  CLUS_2               1                42
  CLUS_3               2               125
  CLUS_4               2               117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C18ORF8 MUTATED        2      0      3      1      0      0
  C18ORF8 WILD-TYPE     72     47     85     64     27     81
D96V10, multiclass
        clus
vv       C18ORF8 MUTATED C18ORF8 WILD-TYPE
  CLUS_1               2                72
  CLUS_2               0                47
  CLUS_3               3                85
  CLUS_4               1                64
  CLUS_5               0                27
  CLUS_6               0                81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = PRB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB2 MUTATED        0      5      1      1
  PRB2 WILD-TYPE    162    132     58     33
D97V1, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            0            162
  CLUS_2            5            132
  CLUS_3            1             58
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB2 MUTATED        1      5      0      1
  PRB2 WILD-TYPE    134    107     69     78
D97V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1            134
  CLUS_2            5            107
  CLUS_3            0             69
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB2 MUTATED        0      0      1      1      1
  PRB2 WILD-TYPE     37     29     35      4     19
D97V3, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            0             37
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            1              4
  CLUS_5            1             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB2 MUTATED        2      1      0      0
  PRB2 WILD-TYPE     41     37     27     19
D97V4, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            1             37
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB2 MUTATED        3      3      1
  PRB2 WILD-TYPE    111    170    103
D97V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3            111
  CLUS_2            3            170
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB2 MUTATED        2      3      2
  PRB2 WILD-TYPE    114    103    167
D97V6, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2            114
  CLUS_2            3            103
  CLUS_3            2            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB2 MUTATED        2      0      5
  PRB2 WILD-TYPE    117     96    172
D97V7, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2            117
  CLUS_2            0             96
  CLUS_3            5            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB2 MUTATED        2      1      2      0      2
  PRB2 WILD-TYPE     84     98     87     65     51
D97V8, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             84
  CLUS_2            1             98
  CLUS_3            2             87
  CLUS_4            0             65
  CLUS_5            2             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB2 MUTATED        1      0      4      2
  PRB2 WILD-TYPE     92     43    123    117
D97V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             92
  CLUS_2            0             43
  CLUS_3            4            123
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRB2 MUTATED        1      0      4      1      0      1
  PRB2 WILD-TYPE     73     47     84     64     27     80
D97V10, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            0             47
  CLUS_3            4             84
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            1             80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = POU3F1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU3F1 MUTATED        0      2      0      1
  POU3F1 WILD-TYPE    162    135     59     33
D98V1, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              0              162
  CLUS_2              2              135
  CLUS_3              0               59
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU3F1 MUTATED        0      1      0      2
  POU3F1 WILD-TYPE    135    111     69     77
D98V2, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              0              135
  CLUS_2              1              111
  CLUS_3              0               69
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU3F1 MUTATED        0      0      1      0      0
  POU3F1 WILD-TYPE     37     29     35      5     20
D98V3, multiclass
[1] "Remove cluster labels:" "POU3F1 MUTATED"        
clus
  POU3F1 MUTATED POU3F1 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU3F1 MUTATED        0      0      1      0
  POU3F1 WILD-TYPE     43     38     26     19
D98V4, multiclass
[1] "Remove cluster labels:" "POU3F1 MUTATED"        
clus
  POU3F1 MUTATED POU3F1 WILD-TYPE 
               1              126 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3IL       TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3IT       TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-DK-A3WX       TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A2EO       TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-G2-A3VY       TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GC-A3YS       TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GD-A3OS       TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GV-A3JZ       TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-GV-A3QI       TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-H4-A2HO       TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
      TCGA-K4-A3WU       TCGA-K4-A3WV 
"POU3F1 WILD-TYPE" "POU3F1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POU3F1 MUTATED        2      0      1
  POU3F1 WILD-TYPE    112    173    103
D98V5, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              2              112
  CLUS_2              0              173
  CLUS_3              1              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POU3F1 MUTATED        1      0      2
  POU3F1 WILD-TYPE    115    106    167
D98V6, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              0              106
  CLUS_3              2              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POU3F1 MUTATED        0      2      1
  POU3F1 WILD-TYPE    119     94    176
D98V7, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              0              119
  CLUS_2              2               94
  CLUS_3              1              176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU3F1 MUTATED        1      2      0      0      0
  POU3F1 WILD-TYPE     85     97     89     65     53
D98V8, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              2               97
  CLUS_3              0               89
  CLUS_4              0               65
  CLUS_5              0               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU3F1 MUTATED        0      2      1      0
  POU3F1 WILD-TYPE     93     41    126    119
D98V9, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              0               93
  CLUS_2              2               41
  CLUS_3              1              126
  CLUS_4              0              119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POU3F1 MUTATED        0      2      1      0      0      0
  POU3F1 WILD-TYPE     74     45     87     65     27     81
D98V10, multiclass
        clus
vv       POU3F1 MUTATED POU3F1 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              2               45
  CLUS_3              1               87
  CLUS_4              0               65
  CLUS_5              0               27
  CLUS_6              0               81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = EZR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZR MUTATED        5      3      4      0
  EZR WILD-TYPE    157    134     55     34
D99V1, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           5           157
  CLUS_2           3           134
  CLUS_3           4            55
  CLUS_4           0            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZR MUTATED        5      4      1      2
  EZR WILD-TYPE    130    108     68     77
D99V2, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           5           130
  CLUS_2           4           108
  CLUS_3           1            68
  CLUS_4           2            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EZR MUTATED        3      1      2      0      0
  EZR WILD-TYPE     34     28     34      5     20
D99V3, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           3            34
  CLUS_2           1            28
  CLUS_3           2            34
  CLUS_4           0             5
  CLUS_5           0            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZR MUTATED        1      2      2      1
  EZR WILD-TYPE     42     36     25     18
D99V4, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           1            42
  CLUS_2           2            36
  CLUS_3           2            25
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EZR MUTATED        5      5      2
  EZR WILD-TYPE    109    168    102
D99V5, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           5           109
  CLUS_2           5           168
  CLUS_3           2           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EZR MUTATED        3      4      5
  EZR WILD-TYPE    113    102    164
D99V6, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           3           113
  CLUS_2           4           102
  CLUS_3           5           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EZR MUTATED        5      2      5
  EZR WILD-TYPE    114     94    172
D99V7, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           5           114
  CLUS_2           2            94
  CLUS_3           5           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EZR MUTATED        1      3      3      1      4
  EZR WILD-TYPE     85     96     86     64     49
D99V8, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           1            85
  CLUS_2           3            96
  CLUS_3           3            86
  CLUS_4           1            64
  CLUS_5           4            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZR MUTATED        2      1      5      4
  EZR WILD-TYPE     91     42    122    115
D99V9, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           2            91
  CLUS_2           1            42
  CLUS_3           5           122
  CLUS_4           4           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EZR MUTATED        3      1      5      1      0      2
  EZR WILD-TYPE     71     46     83     64     27     79
D99V10, multiclass
        clus
vv       EZR MUTATED EZR WILD-TYPE
  CLUS_1           3            71
  CLUS_2           1            46
  CLUS_3           5            83
  CLUS_4           1            64
  CLUS_5           0            27
  CLUS_6           2            79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = ZEB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB2 MUTATED        6      9      1      0
  ZEB2 WILD-TYPE    156    128     58     34
D100V1, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6            156
  CLUS_2            9            128
  CLUS_3            1             58
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB2 MUTATED        6      7      3      0
  ZEB2 WILD-TYPE    129    105     66     79
D100V2, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6            129
  CLUS_2            7            105
  CLUS_3            3             66
  CLUS_4            0             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZEB2 MUTATED        1      0      1      0      0
  ZEB2 WILD-TYPE     36     29     35      5     20
D100V3, multiclass
[1] "Remove cluster labels:" "ZEB2 MUTATED"          
clus
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HS     TCGA-CF-A27C     TCGA-CF-A3MF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI     TCGA-CU-A0YN 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL     TCGA-DK-A1A3 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA     TCGA-DK-A1AB 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE     TCGA-DK-A1AF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1     TCGA-DK-A2I2 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL     TCGA-DK-A3IM 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT     TCGA-DK-A3IU 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX     TCGA-DK-A3WY 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC     TCGA-E7-A3X6 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4     TCGA-FD-A3B5 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8     TCGA-FD-A3N5 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ     TCGA-FD-A3SL 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO     TCGA-FD-A3SP 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-K4-A3WV 
"ZEB2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB2 MUTATED        1      0      1      0
  ZEB2 WILD-TYPE     42     38     26     19
D100V4, multiclass
[1] "Remove cluster labels:" "ZEB2 MUTATED"          
clus
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LB     TCGA-BT-A2LD 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-BT-A3PH     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HS     TCGA-CF-A27C     TCGA-CF-A3MF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI     TCGA-CU-A0YN 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL     TCGA-DK-A1A3 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA     TCGA-DK-A1AB 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE     TCGA-DK-A1AF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1     TCGA-DK-A2I2 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL     TCGA-DK-A3IM 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT     TCGA-DK-A3IU 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX     TCGA-DK-A3WY 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E5-A2PC     TCGA-E7-A3X6 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4     TCGA-FD-A3B5 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8     TCGA-FD-A3N5 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ     TCGA-FD-A3SL 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO     TCGA-FD-A3SP 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-K4-A3WV 
"ZEB2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB2 MUTATED        4      7      5
  ZEB2 WILD-TYPE    110    166     99
D100V5, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            4            110
  CLUS_2            7            166
  CLUS_3            5             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB2 MUTATED        6      4      6
  ZEB2 WILD-TYPE    110    102    163
D100V6, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6            110
  CLUS_2            4            102
  CLUS_3            6            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB2 MUTATED        6      4      5
  ZEB2 WILD-TYPE    113     92    172
D100V7, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6            113
  CLUS_2            4             92
  CLUS_3            5            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZEB2 MUTATED        4      2      0      5      4
  ZEB2 WILD-TYPE     82     97     89     60     49
D100V8, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            4             82
  CLUS_2            2             97
  CLUS_3            0             89
  CLUS_4            5             60
  CLUS_5            4             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB2 MUTATED        5      1      5      4
  ZEB2 WILD-TYPE     88     42    122    115
D100V9, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            5             88
  CLUS_2            1             42
  CLUS_3            5            122
  CLUS_4            4            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZEB2 MUTATED        3      2      4      2      0      4
  ZEB2 WILD-TYPE     71     45     84     63     27     77
D100V10, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            3             71
  CLUS_2            2             45
  CLUS_3            4             84
  CLUS_4            2             63
  CLUS_5            0             27
  CLUS_6            4             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = C12ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF43 MUTATED        1      6      1      0
  C12ORF43 WILD-TYPE    161    131     58     34
D101V1, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                1                161
  CLUS_2                6                131
  CLUS_3                1                 58
  CLUS_4                0                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF43 MUTATED        4      3      1      0
  C12ORF43 WILD-TYPE    131    109     68     79
D101V2, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                4                131
  CLUS_2                3                109
  CLUS_3                1                 68
  CLUS_4                0                 79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF43 MUTATED        0      0      1      0      2
  C12ORF43 WILD-TYPE     37     29     35      5     18
D101V3, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                0                 29
  CLUS_3                1                 35
  CLUS_4                0                  5
  CLUS_5                2                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF43 MUTATED        1      0      0      2
  C12ORF43 WILD-TYPE     42     38     27     17
D101V4, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                0                 38
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF43 MUTATED        2      3      2
  C12ORF43 WILD-TYPE    112    170    102
D101V5, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                2                112
  CLUS_2                3                170
  CLUS_3                2                102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF43 MUTATED        1      2      4
  C12ORF43 WILD-TYPE    115    104    165
D101V6, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                1                115
  CLUS_2                2                104
  CLUS_3                4                165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF43 MUTATED        0      4      3
  C12ORF43 WILD-TYPE    119     92    174
D101V7, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                0                119
  CLUS_2                4                 92
  CLUS_3                3                174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF43 MUTATED        2      4      0      1      0
  C12ORF43 WILD-TYPE     84     95     89     64     53
D101V8, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                4                 95
  CLUS_3                0                 89
  CLUS_4                1                 64
  CLUS_5                0                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF43 MUTATED        3      1      1      2
  C12ORF43 WILD-TYPE     90     42    126    117
D101V9, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                3                 90
  CLUS_2                1                 42
  CLUS_3                1                126
  CLUS_4                2                117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C12ORF43 MUTATED        0      1      1      2      0      3
  C12ORF43 WILD-TYPE     74     46     87     63     27     78
D101V10, multiclass
        clus
vv       C12ORF43 MUTATED C12ORF43 WILD-TYPE
  CLUS_1                0                 74
  CLUS_2                1                 46
  CLUS_3                1                 87
  CLUS_4                2                 63
  CLUS_5                0                 27
  CLUS_6                3                 78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = NAP1L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        2      2      3      3
  NAP1L1 WILD-TYPE    160    135     56     31
D102V1, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              2              160
  CLUS_2              2              135
  CLUS_3              3               56
  CLUS_4              3               31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        6      3      0      1
  NAP1L1 WILD-TYPE    129    109     69     78
D102V2, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              6              129
  CLUS_2              3              109
  CLUS_3              0               69
  CLUS_4              1               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L1 MUTATED        0      1      1      0      0
  NAP1L1 WILD-TYPE     37     28     35      5     20
D102V3, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20T 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W       TCGA-BT-A20X 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD       TCGA-BT-A3PH 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B       TCGA-BT-A42C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1       TCGA-C4-A0F6 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS       TCGA-CF-A27C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH       TCGA-CF-A3MI 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU       TCGA-CU-A3YL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6       TCGA-DK-A1AA 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD       TCGA-DK-A1AE 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8       TCGA-FD-A3N5 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ       TCGA-FD-A3SL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO       TCGA-FD-A3SP 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS       TCGA-FJ-A3Z7 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC       TCGA-G2-A2EF 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL       TCGA-G2-A2EO 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-K4-A3WV 
"NAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        1      1      0      0
  NAP1L1 WILD-TYPE     42     37     27     19
D102V4, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20T 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W       TCGA-BT-A20X 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD       TCGA-BT-A3PH 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B       TCGA-BT-A42C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1       TCGA-C4-A0F6 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS       TCGA-CF-A27C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH       TCGA-CF-A3MI 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU       TCGA-CU-A3YL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6       TCGA-DK-A1AA 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD       TCGA-DK-A1AE 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX       TCGA-DK-A2I1 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A2I2       TCGA-DK-A2I4       TCGA-DK-A3IK       TCGA-DK-A3IL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8       TCGA-FD-A3N5 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ       TCGA-FD-A3SL 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO       TCGA-FD-A3SP 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS       TCGA-FJ-A3Z7 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC       TCGA-G2-A2EF 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL       TCGA-G2-A2EO 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-K4-A3WV 
"NAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        3      3      4
  NAP1L1 WILD-TYPE    111    170    100
D102V5, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              3              111
  CLUS_2              3              170
  CLUS_3              4              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        1      2      7
  NAP1L1 WILD-TYPE    115    104    162
D102V6, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              1              115
  CLUS_2              2              104
  CLUS_3              7              162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        6      1      3
  NAP1L1 WILD-TYPE    113     95    174
D102V7, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              6              113
  CLUS_2              1               95
  CLUS_3              3              174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L1 MUTATED        1      3      0      2      4
  NAP1L1 WILD-TYPE     85     96     89     63     49
D102V8, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              1               85
  CLUS_2              3               96
  CLUS_3              0               89
  CLUS_4              2               63
  CLUS_5              4               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        3      0      2      5
  NAP1L1 WILD-TYPE     90     43    125    114
D102V9, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              3               90
  CLUS_2              0               43
  CLUS_3              2              125
  CLUS_4              5              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAP1L1 MUTATED        4      0      2      1      0      3
  NAP1L1 WILD-TYPE     70     47     86     64     27     78
D102V10, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              4               70
  CLUS_2              0               47
  CLUS_3              2               86
  CLUS_4              1               64
  CLUS_5              0               27
  CLUS_6              3               78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = NAALADL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAALADL1 MUTATED        2      4      1      0
  NAALADL1 WILD-TYPE    160    133     58     34
D103V1, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                2                160
  CLUS_2                4                133
  CLUS_3                1                 58
  CLUS_4                0                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAALADL1 MUTATED        2      3      1      1
  NAALADL1 WILD-TYPE    133    109     68     78
D103V2, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                2                133
  CLUS_2                3                109
  CLUS_3                1                 68
  CLUS_4                1                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAALADL1 MUTATED        0      0      0      0      1
  NAALADL1 WILD-TYPE     37     29     36      5     19
D103V3, multiclass
[1] "Remove cluster labels:" "NAALADL1 MUTATED"      
clus
  NAALADL1 MUTATED NAALADL1 WILD-TYPE 
                 1                126 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A2LB         TCGA-BT-A2LD         TCGA-BT-A3PH 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A3PJ         TCGA-BT-A3PK         TCGA-BT-A42B 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A42C         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-C4-A0F1         TCGA-C4-A0F6         TCGA-C4-A0F7 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A1HR         TCGA-CF-A1HS         TCGA-CF-A27C 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A3MF         TCGA-CF-A3MG         TCGA-CF-A3MH 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A3MI         TCGA-CU-A0YN         TCGA-CU-A3KJ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1AA 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1AB         TCGA-DK-A1AC         TCGA-DK-A1AD 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1AE         TCGA-DK-A1AF         TCGA-DK-A1AG 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A2I1         TCGA-DK-A2I2 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A2I4         TCGA-DK-A3IK         TCGA-DK-A3IL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3IM         TCGA-DK-A3IN         TCGA-DK-A3IQ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3WY         TCGA-DK-A3X1 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-E7-A3X6 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FJ-A3Z7         TCGA-FJ-A3ZE 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-G2-A2EC         TCGA-G2-A2EF 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3WC         TCGA-GC-A3YS 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42R         TCGA-GV-A3JV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3QG         TCGA-GV-A3QH         TCGA-GV-A3QI 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-H4-A2HO         TCGA-H4-A2HQ         TCGA-HQ-A2OE 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-K4-A3WS         TCGA-K4-A3WU         TCGA-K4-A3WV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAALADL1 MUTATED        0      0      0      1
  NAALADL1 WILD-TYPE     43     38     27     18
D103V4, multiclass
[1] "Remove cluster labels:" "NAALADL1 MUTATED"      
clus
  NAALADL1 MUTATED NAALADL1 WILD-TYPE 
                 1                126 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A2LB         TCGA-BT-A2LD         TCGA-BT-A3PH 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A3PJ         TCGA-BT-A3PK         TCGA-BT-A42B 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-BT-A42C         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-C4-A0F1         TCGA-C4-A0F6         TCGA-C4-A0F7 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A1HR         TCGA-CF-A1HS         TCGA-CF-A27C 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A3MF         TCGA-CF-A3MG         TCGA-CF-A3MH 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CF-A3MI         TCGA-CU-A0YN         TCGA-CU-A3KJ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1AA 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1AB         TCGA-DK-A1AC         TCGA-DK-A1AD 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A1AE         TCGA-DK-A1AF         TCGA-DK-A1AG 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A2I1         TCGA-DK-A2I2 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A2I4         TCGA-DK-A3IK         TCGA-DK-A3IL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3IM         TCGA-DK-A3IN         TCGA-DK-A3IQ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3WY         TCGA-DK-A3X1 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-E7-A3X6 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FJ-A3Z7         TCGA-FJ-A3ZE 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-G2-A2EC         TCGA-G2-A2EF 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3WC         TCGA-GC-A3YS 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42R         TCGA-GV-A3JV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3QG         TCGA-GV-A3QH         TCGA-GV-A3QI 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-H4-A2HO         TCGA-H4-A2HQ         TCGA-HQ-A2OE 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
        TCGA-K4-A3WS         TCGA-K4-A3WU         TCGA-K4-A3WV 
"NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" "NAALADL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NAALADL1 MUTATED        2      3      2
  NAALADL1 WILD-TYPE    112    170    102
D103V5, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                2                112
  CLUS_2                3                170
  CLUS_3                2                102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NAALADL1 MUTATED        3      1      3
  NAALADL1 WILD-TYPE    113    105    166
D103V6, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                3                113
  CLUS_2                1                105
  CLUS_3                3                166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NAALADL1 MUTATED        1      2      4
  NAALADL1 WILD-TYPE    118     94    173
D103V7, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                1                118
  CLUS_2                2                 94
  CLUS_3                4                173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAALADL1 MUTATED        2      2      2      1      0
  NAALADL1 WILD-TYPE     84     97     87     64     53
D103V8, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                2                 84
  CLUS_2                2                 97
  CLUS_3                2                 87
  CLUS_4                1                 64
  CLUS_5                0                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAALADL1 MUTATED        3      2      2      0
  NAALADL1 WILD-TYPE     90     41    125    119
D103V9, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                3                 90
  CLUS_2                2                 41
  CLUS_3                2                125
  CLUS_4                0                119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAALADL1 MUTATED        0      2      3      0      0      2
  NAALADL1 WILD-TYPE     74     45     85     65     27     79
D103V10, multiclass
        clus
vv       NAALADL1 MUTATED NAALADL1 WILD-TYPE
  CLUS_1                0                 74
  CLUS_2                2                 45
  CLUS_3                3                 85
  CLUS_4                0                 65
  CLUS_5                0                 27
  CLUS_6                2                 79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = DENND5B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND5B MUTATED        7     10      3      0
  DENND5B WILD-TYPE    155    127     56     34
D104V1, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               7               155
  CLUS_2              10               127
  CLUS_3               3                56
  CLUS_4               0                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND5B MUTATED        8      9      1      2
  DENND5B WILD-TYPE    127    103     68     77
D104V2, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               8               127
  CLUS_2               9               103
  CLUS_3               1                68
  CLUS_4               2                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND5B MUTATED        5      1      1      1      0
  DENND5B WILD-TYPE     32     28     35      4     20
D104V3, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               5                32
  CLUS_2               1                28
  CLUS_3               1                35
  CLUS_4               1                 4
  CLUS_5               0                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND5B MUTATED        7      0      1      0
  DENND5B WILD-TYPE     36     38     26     19
D104V4, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               7                36
  CLUS_2               0                38
  CLUS_3               1                26
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND5B MUTATED        9      9      2
  DENND5B WILD-TYPE    105    164    102
D104V5, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               9               105
  CLUS_2               9               164
  CLUS_3               2               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND5B MUTATED        5      8      7
  DENND5B WILD-TYPE    111     98    162
D104V6, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               5               111
  CLUS_2               8                98
  CLUS_3               7               162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND5B MUTATED        9      4      7
  DENND5B WILD-TYPE    110     92    170
D104V7, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               9               110
  CLUS_2               4                92
  CLUS_3               7               170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND5B MUTATED        4      4      4      4      4
  DENND5B WILD-TYPE     82     95     85     61     49
D104V8, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               4                82
  CLUS_2               4                95
  CLUS_3               4                85
  CLUS_4               4                61
  CLUS_5               4                49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND5B MUTATED        4      1      7      8
  DENND5B WILD-TYPE     89     42    120    111
D104V9, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               4                89
  CLUS_2               1                42
  CLUS_3               7               120
  CLUS_4               8               111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DENND5B MUTATED        6      2      5      3      0      4
  DENND5B WILD-TYPE     68     45     83     62     27     77
D104V10, multiclass
        clus
vv       DENND5B MUTATED DENND5B WILD-TYPE
  CLUS_1               6                68
  CLUS_2               2                45
  CLUS_3               5                83
  CLUS_4               3                62
  CLUS_5               0                27
  CLUS_6               4                77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = SF3B3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        9      8      3      1
  SF3B3 WILD-TYPE    153    129     56     33
D105V1, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             9             153
  CLUS_2             8             129
  CLUS_3             3              56
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        8      5      4      4
  SF3B3 WILD-TYPE    127    107     65     75
D105V2, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             8             127
  CLUS_2             5             107
  CLUS_3             4              65
  CLUS_4             4              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        2      0      3      1      0
  SF3B3 WILD-TYPE     35     29     33      4     20
D105V3, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              29
  CLUS_3             3              33
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        2      1      3      0
  SF3B3 WILD-TYPE     41     37     24     19
D105V4, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             1              37
  CLUS_3             3              24
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B3 MUTATED        7     10      3
  SF3B3 WILD-TYPE    107    163    101
D105V5, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             7             107
  CLUS_2            10             163
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B3 MUTATED        7      8      5
  SF3B3 WILD-TYPE    109     98    164
D105V6, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             7             109
  CLUS_2             8              98
  CLUS_3             5             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B3 MUTATED        5      4     12
  SF3B3 WILD-TYPE    114     92    165
D105V7, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             5             114
  CLUS_2             4              92
  CLUS_3            12             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        4      7      4      3      3
  SF3B3 WILD-TYPE     82     92     85     62     50
D105V8, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             4              82
  CLUS_2             7              92
  CLUS_3             4              85
  CLUS_4             3              62
  CLUS_5             3              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        4      2      9      6
  SF3B3 WILD-TYPE     89     41    118    113
D105V9, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             4              89
  CLUS_2             2              41
  CLUS_3             9             118
  CLUS_4             6             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B3 MUTATED        2      1      4      6      4      4
  SF3B3 WILD-TYPE     72     46     84     59     23     77
D105V10, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             1              46
  CLUS_3             4              84
  CLUS_4             6              59
  CLUS_5             4              23
  CLUS_6             4              77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = KIAA1522 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        3      8      1      3
  KIAA1522 WILD-TYPE    159    129     58     31
D106V1, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                159
  CLUS_2                8                129
  CLUS_3                1                 58
  CLUS_4                3                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        4      6      2      3
  KIAA1522 WILD-TYPE    131    106     67     76
D106V2, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                4                131
  CLUS_2                6                106
  CLUS_3                2                 67
  CLUS_4                3                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        3      0      0      0      0
  KIAA1522 WILD-TYPE     34     29     36      5     20
D106V3, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                0                 29
  CLUS_3                0                 36
  CLUS_4                0                  5
  CLUS_5                0                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        3      0      0      0
  KIAA1522 WILD-TYPE     40     38     27     19
D106V4, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                 40
  CLUS_2                0                 38
  CLUS_3                0                 27
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1522 MUTATED        4     10      1
  KIAA1522 WILD-TYPE    110    163    103
D106V5, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                4                110
  CLUS_2               10                163
  CLUS_3                1                103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1522 MUTATED        5      5      5
  KIAA1522 WILD-TYPE    111    101    164
D106V6, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                5                111
  CLUS_2                5                101
  CLUS_3                5                164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1522 MUTATED        3      7      5
  KIAA1522 WILD-TYPE    116     89    172
D106V7, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                116
  CLUS_2                7                 89
  CLUS_3                5                172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        1      8      3      3      0
  KIAA1522 WILD-TYPE     85     91     86     62     53
D106V8, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                1                 85
  CLUS_2                8                 91
  CLUS_3                3                 86
  CLUS_4                3                 62
  CLUS_5                0                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        3      3      5      3
  KIAA1522 WILD-TYPE     90     40    122    116
D106V9, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                 90
  CLUS_2                3                 40
  CLUS_3                5                122
  CLUS_4                3                116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1522 MUTATED        0      2      5      4      0      3
  KIAA1522 WILD-TYPE     74     45     83     61     27     78
D106V10, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                0                 74
  CLUS_2                2                 45
  CLUS_3                5                 83
  CLUS_4                4                 61
  CLUS_5                0                 27
  CLUS_6                3                 78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = GTF2I MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2I MUTATED        2      8      6      0
  GTF2I WILD-TYPE    160    129     53     34
D107V1, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             2             160
  CLUS_2             8             129
  CLUS_3             6              53
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2I MUTATED        5      7      2      2
  GTF2I WILD-TYPE    130    105     67     77
D107V2, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             5             130
  CLUS_2             7             105
  CLUS_3             2              67
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2I MUTATED        1      1      0      1      0
  GTF2I WILD-TYPE     36     28     36      4     20
D107V3, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              36
  CLUS_2             1              28
  CLUS_3             0              36
  CLUS_4             1               4
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2I MUTATED        1      2      0      0
  GTF2I WILD-TYPE     42     36     27     19
D107V4, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              42
  CLUS_2             2              36
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2I MUTATED        5      6      5
  GTF2I WILD-TYPE    109    167     99
D107V5, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             5             109
  CLUS_2             6             167
  CLUS_3             5              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2I MUTATED        6      3      7
  GTF2I WILD-TYPE    110    103    162
D107V6, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             6             110
  CLUS_2             3             103
  CLUS_3             7             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2I MUTATED        7      3      6
  GTF2I WILD-TYPE    112     93    171
D107V7, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             7             112
  CLUS_2             3              93
  CLUS_3             6             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF2I MUTATED        5      4      3      2      2
  GTF2I WILD-TYPE     81     95     86     63     51
D107V8, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             5              81
  CLUS_2             4              95
  CLUS_3             3              86
  CLUS_4             2              63
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2I MUTATED        5      0      5      6
  GTF2I WILD-TYPE     88     43    122    113
D107V9, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             5              88
  CLUS_2             0              43
  CLUS_3             5             122
  CLUS_4             6             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF2I MUTATED        1      0      7      3      0      5
  GTF2I WILD-TYPE     73     47     81     62     27     76
D107V10, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              73
  CLUS_2             0              47
  CLUS_3             7              81
  CLUS_4             3              62
  CLUS_5             0              27
  CLUS_6             5              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = MOAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOAP1 MUTATED        3      4      0      0
  MOAP1 WILD-TYPE    159    133     59     34
D108V1, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             3             159
  CLUS_2             4             133
  CLUS_3             0              59
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOAP1 MUTATED        1      4      0      2
  MOAP1 WILD-TYPE    134    108     69     77
D108V2, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             1             134
  CLUS_2             4             108
  CLUS_3             0              69
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOAP1 MUTATED        2      0      1      0      0
  MOAP1 WILD-TYPE     35     29     35      5     20
D108V3, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              29
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOAP1 MUTATED        1      1      1      0
  MOAP1 WILD-TYPE     42     37     26     19
D108V4, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             1              37
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOAP1 MUTATED        0      6      1
  MOAP1 WILD-TYPE    114    167    103
D108V5, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             0             114
  CLUS_2             6             167
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOAP1 MUTATED        3      2      2
  MOAP1 WILD-TYPE    113    104    167
D108V6, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             3             113
  CLUS_2             2             104
  CLUS_3             2             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOAP1 MUTATED        2      3      2
  MOAP1 WILD-TYPE    117     93    175
D108V7, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             3              93
  CLUS_3             2             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOAP1 MUTATED        0      3      2      1      1
  MOAP1 WILD-TYPE     86     96     87     64     52
D108V8, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             3              96
  CLUS_3             2              87
  CLUS_4             1              64
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOAP1 MUTATED        1      1      3      2
  MOAP1 WILD-TYPE     92     42    124    117
D108V9, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             1              42
  CLUS_3             3             124
  CLUS_4             2             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOAP1 MUTATED        2      1      2      0      1      1
  MOAP1 WILD-TYPE     72     46     86     65     26     80
D108V10, multiclass
        clus
vv       MOAP1 MUTATED MOAP1 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             1              46
  CLUS_3             2              86
  CLUS_4             0              65
  CLUS_5             1              26
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = GAR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAR1 MUTATED        1      2      0      1
  GAR1 WILD-TYPE    161    135     59     33
D109V1, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1            161
  CLUS_2            2            135
  CLUS_3            0             59
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAR1 MUTATED        0      3      0      1
  GAR1 WILD-TYPE    135    109     69     78
D109V2, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            0            135
  CLUS_2            3            109
  CLUS_3            0             69
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAR1 MUTATED        0      0      1      1      0
  GAR1 WILD-TYPE     37     29     35      4     20
D109V3, multiclass
[1] "Remove cluster labels:" "GAR1 MUTATED"          
clus
  GAR1 MUTATED GAR1 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LD     TCGA-BT-A3PH 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS     TCGA-CF-A27C 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E7-A3X6 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4     TCGA-FD-A3B5 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8     TCGA-FD-A3N5 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ     TCGA-FD-A3SL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO     TCGA-FD-A3SP 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-K4-A3WV 
"GAR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAR1 MUTATED        1      0      1      0
  GAR1 WILD-TYPE     42     38     26     19
D109V4, multiclass
[1] "Remove cluster labels:" "GAR1 MUTATED"          
clus
  GAR1 MUTATED GAR1 WILD-TYPE 
             2            125 
    TCGA-BL-A0C8     TCGA-BL-A13I     TCGA-BL-A13J     TCGA-BL-A3JM 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A0S7     TCGA-BT-A0YX     TCGA-BT-A20J     TCGA-BT-A20N 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20O     TCGA-BT-A20P     TCGA-BT-A20Q     TCGA-BT-A20R 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20T     TCGA-BT-A20U     TCGA-BT-A20V     TCGA-BT-A20W 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A20X     TCGA-BT-A2LA     TCGA-BT-A2LD     TCGA-BT-A3PH 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-BT-A3PJ     TCGA-BT-A3PK     TCGA-BT-A42B     TCGA-BT-A42C 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-C4-A0EZ     TCGA-C4-A0F0     TCGA-C4-A0F1     TCGA-C4-A0F6 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-C4-A0F7     TCGA-CF-A1HR     TCGA-CF-A1HS     TCGA-CF-A27C 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-CF-A3MF     TCGA-CF-A3MG     TCGA-CF-A3MH     TCGA-CF-A3MI 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-CU-A0YN     TCGA-CU-A3KJ     TCGA-CU-A3QU     TCGA-CU-A3YL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1A3     TCGA-DK-A1A5     TCGA-DK-A1A6     TCGA-DK-A1AA 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1AB     TCGA-DK-A1AC     TCGA-DK-A1AD     TCGA-DK-A1AE 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A1AF     TCGA-DK-A1AG     TCGA-DK-A2HX     TCGA-DK-A2I1 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A2I2     TCGA-DK-A2I4     TCGA-DK-A3IK     TCGA-DK-A3IL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3IM     TCGA-DK-A3IN     TCGA-DK-A3IQ     TCGA-DK-A3IT 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3IU     TCGA-DK-A3IV     TCGA-DK-A3WW     TCGA-DK-A3WX 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-DK-A3WY     TCGA-DK-A3X1     TCGA-DK-A3X2     TCGA-E7-A3X6 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-E7-A3Y1     TCGA-FD-A3B3     TCGA-FD-A3B4     TCGA-FD-A3B5 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3B6     TCGA-FD-A3B7     TCGA-FD-A3B8     TCGA-FD-A3N5 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3N6     TCGA-FD-A3NA     TCGA-FD-A3SJ     TCGA-FD-A3SL 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3SM     TCGA-FD-A3SN     TCGA-FD-A3SO     TCGA-FD-A3SP 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FD-A3SQ     TCGA-FD-A3SR     TCGA-FD-A3SS     TCGA-FJ-A3Z7 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-FJ-A3ZE     TCGA-FJ-A3ZF     TCGA-G2-A2EC     TCGA-G2-A2EF 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-G2-A2EJ     TCGA-G2-A2EK     TCGA-G2-A2EL     TCGA-G2-A2EO 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-G2-A2ES     TCGA-G2-A3IB     TCGA-G2-A3IE     TCGA-G2-A3VY 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GC-A3BM     TCGA-GC-A3I6     TCGA-GC-A3WC     TCGA-GC-A3YS 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GD-A2C5     TCGA-GD-A3OP     TCGA-GD-A3OQ     TCGA-GD-A3OS 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GU-A42R     TCGA-GV-A3JV     TCGA-GV-A3JW     TCGA-GV-A3JZ 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GV-A3QF     TCGA-GV-A3QG     TCGA-GV-A3QH     TCGA-GV-A3QI 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-GV-A3QK     TCGA-GV-A40E     TCGA-GV-A40G     TCGA-H4-A2HO 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-H4-A2HQ     TCGA-HQ-A2OE     TCGA-K4-A3WS     TCGA-K4-A3WU 
"GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" "GAR1 WILD-TYPE" 
    TCGA-K4-A3WV 
"GAR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAR1 MUTATED        1      2      1
  GAR1 WILD-TYPE    113    171    103
D109V5, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1            113
  CLUS_2            2            171
  CLUS_3            1            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAR1 MUTATED        1      2      1
  GAR1 WILD-TYPE    115    104    168
D109V6, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1            115
  CLUS_2            2            104
  CLUS_3            1            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAR1 MUTATED        1      0      3
  GAR1 WILD-TYPE    118     96    174
D109V7, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1            118
  CLUS_2            0             96
  CLUS_3            3            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAR1 MUTATED        1      1      1      0      1
  GAR1 WILD-TYPE     85     98     88     65     52
D109V8, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            1             98
  CLUS_3            1             88
  CLUS_4            0             65
  CLUS_5            1             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAR1 MUTATED        0      0      3      1
  GAR1 WILD-TYPE     93     43    124    118
D109V9, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            0             93
  CLUS_2            0             43
  CLUS_3            3            124
  CLUS_4            1            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAR1 MUTATED        1      0      2      0      1      0
  GAR1 WILD-TYPE     73     47     86     65     26     81
D109V10, multiclass
        clus
vv       GAR1 MUTATED GAR1 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            0             47
  CLUS_3            2             86
  CLUS_4            0             65
  CLUS_5            1             26
  CLUS_6            0             81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = RFTN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFTN2 MUTATED        7      2      2      0
  RFTN2 WILD-TYPE    155    135     57     34
D110V1, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             7             155
  CLUS_2             2             135
  CLUS_3             2              57
  CLUS_4             0              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFTN2 MUTATED        2      4      5      0
  RFTN2 WILD-TYPE    133    108     64     79
D110V2, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             2             133
  CLUS_2             4             108
  CLUS_3             5              64
  CLUS_4             0              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFTN2 MUTATED        0      1      2      0      0
  RFTN2 WILD-TYPE     37     28     34      5     20
D110V3, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             0              37
  CLUS_2             1              28
  CLUS_3             2              34
  CLUS_4             0               5
  CLUS_5             0              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFTN2 MUTATED        0      1      2      0
  RFTN2 WILD-TYPE     43     37     25     19
D110V4, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             0              43
  CLUS_2             1              37
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFTN2 MUTATED        2      6      3
  RFTN2 WILD-TYPE    112    167    101
D110V5, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             2             112
  CLUS_2             6             167
  CLUS_3             3             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFTN2 MUTATED        6      2      3
  RFTN2 WILD-TYPE    110    104    166
D110V6, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             6             110
  CLUS_2             2             104
  CLUS_3             3             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFTN2 MUTATED        4      2      5
  RFTN2 WILD-TYPE    115     94    172
D110V7, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             4             115
  CLUS_2             2              94
  CLUS_3             5             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFTN2 MUTATED        2      1      5      1      2
  RFTN2 WILD-TYPE     84     98     84     64     51
D110V8, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             2              84
  CLUS_2             1              98
  CLUS_3             5              84
  CLUS_4             1              64
  CLUS_5             2              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFTN2 MUTATED        2      0      4      5
  RFTN2 WILD-TYPE     91     43    123    114
D110V9, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             2              91
  CLUS_2             0              43
  CLUS_3             4             123
  CLUS_4             5             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RFTN2 MUTATED        2      0      4      5      0      0
  RFTN2 WILD-TYPE     72     47     84     60     27     81
D110V10, multiclass
        clus
vv       RFTN2 MUTATED RFTN2 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             0              47
  CLUS_3             4              84
  CLUS_4             5              60
  CLUS_5             0              27
  CLUS_6             0              81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        6      8      3      0
  ZFP36L2 WILD-TYPE    156    129     56     34
D111V1, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               6               156
  CLUS_2               8               129
  CLUS_3               3                56
  CLUS_4               0                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        5      5      2      5
  ZFP36L2 WILD-TYPE    130    107     67     74
D111V2, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5               130
  CLUS_2               5               107
  CLUS_3               2                67
  CLUS_4               5                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        1      0      3      0      1
  ZFP36L2 WILD-TYPE     36     29     33      5     19
D111V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                36
  CLUS_2               0                29
  CLUS_3               3                33
  CLUS_4               0                 5
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        1      1      2      1
  ZFP36L2 WILD-TYPE     42     37     25     18
D111V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                42
  CLUS_2               1                37
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        5      9      3
  ZFP36L2 WILD-TYPE    109    164    101
D111V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5               109
  CLUS_2               9               164
  CLUS_3               3               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        5      6      6
  ZFP36L2 WILD-TYPE    111    100    163
D111V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5               111
  CLUS_2               6               100
  CLUS_3               6               163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        4      4      9
  ZFP36L2 WILD-TYPE    115     92    168
D111V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               4               115
  CLUS_2               4                92
  CLUS_3               9               168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        2      4      4      4      3
  ZFP36L2 WILD-TYPE     84     95     85     61     50
D111V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               4                95
  CLUS_3               4                85
  CLUS_4               4                61
  CLUS_5               3                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        3      1      7      6
  ZFP36L2 WILD-TYPE     90     42    120    113
D111V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3                90
  CLUS_2               1                42
  CLUS_3               7               120
  CLUS_4               6               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L2 MUTATED        2      1      6      4      1      3
  ZFP36L2 WILD-TYPE     72     46     82     61     26     78
D111V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2                72
  CLUS_2               1                46
  CLUS_3               6                82
  CLUS_4               4                61
  CLUS_5               1                26
  CLUS_6               3                78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = GUCY2C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2C MUTATED        5      5      3      0
  GUCY2C WILD-TYPE    157    132     56     34
D112V1, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              5              157
  CLUS_2              5              132
  CLUS_3              3               56
  CLUS_4              0               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2C MUTATED        5      4      3      1
  GUCY2C WILD-TYPE    130    108     66     78
D112V2, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              5              130
  CLUS_2              4              108
  CLUS_3              3               66
  CLUS_4              1               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2C MUTATED        0      1      2      0      0
  GUCY2C WILD-TYPE     37     28     34      5     20
D112V3, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               28
  CLUS_3              2               34
  CLUS_4              0                5
  CLUS_5              0               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2C MUTATED        0      1      1      1
  GUCY2C WILD-TYPE     43     37     26     18
D112V4, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              0               43
  CLUS_2              1               37
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2C MUTATED        5      5      3
  GUCY2C WILD-TYPE    109    168    101
D112V5, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              5              109
  CLUS_2              5              168
  CLUS_3              3              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2C MUTATED        5      3      5
  GUCY2C WILD-TYPE    111    103    164
D112V6, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              5              111
  CLUS_2              3              103
  CLUS_3              5              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2C MUTATED        7      2      4
  GUCY2C WILD-TYPE    112     94    173
D112V7, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              7              112
  CLUS_2              2               94
  CLUS_3              4              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GUCY2C MUTATED        3      4      3      2      1
  GUCY2C WILD-TYPE     83     95     86     63     52
D112V8, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              3               83
  CLUS_2              4               95
  CLUS_3              3               86
  CLUS_4              2               63
  CLUS_5              1               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2C MUTATED        4      1      4      4
  GUCY2C WILD-TYPE     89     42    123    115
D112V9, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              4               89
  CLUS_2              1               42
  CLUS_3              4              123
  CLUS_4              4              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GUCY2C MUTATED        0      1      3      2      2      5
  GUCY2C WILD-TYPE     74     46     85     63     25     76
D112V10, multiclass
        clus
vv       GUCY2C MUTATED GUCY2C WILD-TYPE
  CLUS_1              0               74
  CLUS_2              1               46
  CLUS_3              3               85
  CLUS_4              2               63
  CLUS_5              2               25
  CLUS_6              5               76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = COPZ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPZ2 MUTATED        0      2      0      1
  COPZ2 WILD-TYPE    162    135     59     33
D113V1, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             0             162
  CLUS_2             2             135
  CLUS_3             0              59
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPZ2 MUTATED        0      3      0      0
  COPZ2 WILD-TYPE    135    109     69     79
D113V2, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             0             135
  CLUS_2             3             109
  CLUS_3             0              69
  CLUS_4             0              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPZ2 MUTATED        2      0      0      0      0
  COPZ2 WILD-TYPE     35     29     36      5     20
D113V3, multiclass
[1] "Remove cluster labels:" "COPZ2 MUTATED"         
clus
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A3WV 
"COPZ2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPZ2 MUTATED        2      0      0      0
  COPZ2 WILD-TYPE     41     38     27     19
D113V4, multiclass
[1] "Remove cluster labels:" "COPZ2 MUTATED"         
clus
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              2             125 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-C4-A0EZ      TCGA-C4-A0F0      TCGA-C4-A0F1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-C4-A0F6      TCGA-C4-A0F7      TCGA-CF-A1HR      TCGA-CF-A1HS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A27C      TCGA-CF-A3MF      TCGA-CF-A3MG      TCGA-CF-A3MH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A3MI      TCGA-CU-A0YN      TCGA-CU-A3KJ      TCGA-CU-A3QU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A3YL      TCGA-DK-A1A3      TCGA-DK-A1A5      TCGA-DK-A1A6 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AA      TCGA-DK-A1AB      TCGA-DK-A1AC      TCGA-DK-A1AE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AF      TCGA-DK-A1AG      TCGA-DK-A2HX      TCGA-DK-A2I1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2I2      TCGA-DK-A2I4      TCGA-DK-A3IK      TCGA-DK-A3IL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IM      TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IT 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-E5-A2PC 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A3X6      TCGA-E7-A3Y1      TCGA-FD-A3B3      TCGA-FD-A3B4 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7      TCGA-FD-A3B8 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA      TCGA-FD-A3SJ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN      TCGA-FD-A3SO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR      TCGA-FD-A3SS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FJ-A3Z7      TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-G2-A2EC 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EF      TCGA-G2-A2EJ      TCGA-G2-A2EK      TCGA-G2-A2EL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EO      TCGA-G2-A2ES      TCGA-G2-A3IB      TCGA-G2-A3IE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3WC      TCGA-GC-A3YS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GD-A2C5      TCGA-GD-A3OP      TCGA-GD-A3OQ      TCGA-GD-A3OS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A42R      TCGA-GV-A3JV      TCGA-GV-A3JW      TCGA-GV-A3JZ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QF      TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QK      TCGA-GV-A40E      TCGA-GV-A40G      TCGA-H4-A2HO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-K4-A3WS      TCGA-K4-A3WU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A3WV 
"COPZ2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPZ2 MUTATED        0      3      0
  COPZ2 WILD-TYPE    114    170    104
D113V5, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             0             114
  CLUS_2             3             170
  CLUS_3             0             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPZ2 MUTATED        1      2      0
  COPZ2 WILD-TYPE    115    104    169
D113V6, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             1             115
  CLUS_2             2             104
  CLUS_3             0             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPZ2 MUTATED        0      1      2
  COPZ2 WILD-TYPE    119     95    175
D113V7, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             0             119
  CLUS_2             1              95
  CLUS_3             2             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COPZ2 MUTATED        0      1      0      1      1
  COPZ2 WILD-TYPE     86     98     89     64     52
D113V8, multiclass
        clus
vv       COPZ2 MUTATED COPZ2 WILD-TYPE
  CLUS_1             0              86
  CLUS_2             1              98
  CLUS_3             0              89
  CLUS_4             1              64
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPZ2 MUTATED        0      0      1      1
  COPZ2 WILD-TYPE     93     43    126    118
D113V9, multiclass
[1] "Remove cluster labels:" "COPZ2 MUTATED"         
clus
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              2             380 
     TCGA-2F-A9KO      TCGA-2F-A9KP      TCGA-2F-A9KQ      TCGA-2F-A9KR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-2F-A9KT      TCGA-2F-A9KW      TCGA-4Z-AA7M      TCGA-4Z-AA7N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA7O      TCGA-4Z-AA7Q      TCGA-4Z-AA7R      TCGA-4Z-AA7S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA7W      TCGA-4Z-AA7Y      TCGA-4Z-AA80      TCGA-4Z-AA81 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA82      TCGA-4Z-AA83      TCGA-4Z-AA84      TCGA-4Z-AA86 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA87      TCGA-4Z-AA89      TCGA-5N-A9KI      TCGA-5N-A9KM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-BT-A42E      TCGA-BT-A42F      TCGA-C4-A0EZ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-C4-A0F0      TCGA-C4-A0F1      TCGA-C4-A0F6      TCGA-C4-A0F7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A1HR      TCGA-CF-A1HS      TCGA-CF-A27C      TCGA-CF-A3MF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A3MG      TCGA-CF-A3MH      TCGA-CF-A3MI      TCGA-CF-A47S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A47T      TCGA-CF-A47V      TCGA-CF-A47W      TCGA-CF-A47X 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A47Y      TCGA-CF-A5UA      TCGA-CF-A7I0      TCGA-CF-A9FF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A9FH      TCGA-CF-A9FL      TCGA-CF-A9FM      TCGA-CU-A0YN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A0YO      TCGA-CU-A0YR      TCGA-CU-A3QU      TCGA-CU-A3YL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A5W6      TCGA-CU-A72E      TCGA-DK-A1A3      TCGA-DK-A1A5 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1A6      TCGA-DK-A1A7      TCGA-DK-A1AA      TCGA-DK-A1AB 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AC      TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2HX      TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2I6      TCGA-DK-A3IK      TCGA-DK-A3IL      TCGA-DK-A3IM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IS      TCGA-DK-A3IT 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-DK-A6AV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A6AW      TCGA-DK-A6B0      TCGA-DK-A6B1      TCGA-DK-A6B2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A6B5      TCGA-DK-AA6L      TCGA-DK-AA6M      TCGA-DK-AA6P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA6Q      TCGA-DK-AA6R      TCGA-DK-AA6S      TCGA-DK-AA6T 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA6U      TCGA-DK-AA6W      TCGA-DK-AA6X      TCGA-DK-AA71 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA74      TCGA-DK-AA75      TCGA-DK-AA76      TCGA-DK-AA77 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E5-A4TZ      TCGA-E5-A4U1      TCGA-E7-A3X6 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A4IJ      TCGA-E7-A4XJ      TCGA-E7-A519      TCGA-E7-A541 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A5KE      TCGA-E7-A5KF      TCGA-E7-A677      TCGA-E7-A6MD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A6ME      TCGA-E7-A7DV      TCGA-E7-A7PW      TCGA-E7-A7XN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A85H      TCGA-E7-A97P      TCGA-E7-A97Q      TCGA-FD-A3B3 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FD-A43N      TCGA-FD-A43P      TCGA-FD-A43S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A43U      TCGA-FD-A43X      TCGA-FD-A5BR      TCGA-FD-A5BS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A5BT      TCGA-FD-A5BU      TCGA-FD-A5BV      TCGA-FD-A5BX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A5BY      TCGA-FD-A5BZ      TCGA-FD-A5C0      TCGA-FD-A5C1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A62N      TCGA-FD-A62O      TCGA-FD-A62P      TCGA-FD-A62S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TA      TCGA-FD-A6TB      TCGA-FD-A6TC      TCGA-FD-A6TD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TE      TCGA-FD-A6TF      TCGA-FD-A6TG      TCGA-FD-A6TH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TI      TCGA-FD-A6TK      TCGA-FJ-A3Z7      TCGA-FJ-A3Z9 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-FJ-A871      TCGA-FT-A3EE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FT-A61P      TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO      TCGA-G2-A2ES 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A3IE      TCGA-G2-AA3B      TCGA-G2-AA3D      TCGA-G2-AA3F 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3OO      TCGA-GC-A3RB 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3RC      TCGA-GC-A3RD      TCGA-GC-A3WC      TCGA-GC-A3YS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A6I1      TCGA-GC-A6I3      TCGA-GD-A2C5      TCGA-GD-A3OP 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GD-A3OQ      TCGA-GD-A3OS      TCGA-GD-A6C6      TCGA-GD-A76B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A42P      TCGA-GU-A42Q      TCGA-GU-A42R      TCGA-GU-A762 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A763      TCGA-GU-A764      TCGA-GU-A766      TCGA-GU-A767 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-AATO      TCGA-GU-AATP      TCGA-GU-AATQ      TCGA-GV-A3JV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3JW      TCGA-GV-A3JX      TCGA-GV-A3JZ      TCGA-GV-A3QF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI      TCGA-GV-A3QK 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A40E      TCGA-GV-A40G      TCGA-GV-A6ZA      TCGA-H4-A2HO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-HQ-A2OF      TCGA-HQ-A5ND 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-HQ-A5NE      TCGA-K4-A3WS      TCGA-K4-A3WU      TCGA-K4-A3WV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A4AB      TCGA-K4-A4AC      TCGA-K4-A54R      TCGA-K4-A5RH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A5RI      TCGA-K4-A6FZ      TCGA-K4-A6MB      TCGA-K4-A83P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-AAQO      TCGA-KQ-A41N      TCGA-KQ-A41O      TCGA-KQ-A41P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-KQ-A41Q      TCGA-KQ-A41R      TCGA-KQ-A41S      TCGA-LC-A66R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-LT-A5Z6      TCGA-MV-A51V      TCGA-PQ-A6FI      TCGA-PQ-A6FN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-R3-A69X      TCGA-S5-A6DX      TCGA-S5-AA26      TCGA-SY-A9G0 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-SY-A9G5      TCGA-UY-A78K      TCGA-UY-A78L      TCGA-UY-A78M 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A78N      TCGA-UY-A78O      TCGA-UY-A8OB      TCGA-UY-A9PA 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A9PB      TCGA-UY-A9PD      TCGA-UY-A9PE      TCGA-UY-A9PF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A9PH      TCGA-XF-A8HH      TCGA-XF-A8HI      TCGA-XF-A9SG 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SH      TCGA-XF-A9SI      TCGA-XF-A9SJ      TCGA-XF-A9SK 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SL      TCGA-XF-A9SM      TCGA-XF-A9SP      TCGA-XF-A9SU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SV      TCGA-XF-A9SW      TCGA-XF-A9SX      TCGA-XF-A9SY 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SZ      TCGA-XF-A9T0      TCGA-XF-A9T2      TCGA-XF-A9T3 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9T4      TCGA-XF-A9T5      TCGA-XF-A9T6      TCGA-XF-A9T8 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAME      TCGA-XF-AAMF      TCGA-XF-AAMG      TCGA-XF-AAMH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMJ      TCGA-XF-AAML      TCGA-XF-AAMQ      TCGA-XF-AAMR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMT      TCGA-XF-AAMW      TCGA-XF-AAMX      TCGA-XF-AAMY 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMZ      TCGA-XF-AAN0      TCGA-XF-AAN1      TCGA-XF-AAN2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAN3      TCGA-XF-AAN4      TCGA-XF-AAN5      TCGA-XF-AAN7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAN8      TCGA-YC-A8S6      TCGA-YC-A9TC      TCGA-YF-AA3L 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-YF-AA3M      TCGA-ZF-A9R0      TCGA-ZF-A9R1      TCGA-ZF-A9R2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9R3      TCGA-ZF-A9R5      TCGA-ZF-A9R7      TCGA-ZF-A9R9 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9RC      TCGA-ZF-A9RD      TCGA-ZF-A9RE      TCGA-ZF-A9RF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9RG      TCGA-ZF-A9RL      TCGA-ZF-A9RM      TCGA-ZF-A9RN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA4N      TCGA-ZF-AA4R      TCGA-ZF-AA4T      TCGA-ZF-AA4U 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA4V      TCGA-ZF-AA4W      TCGA-ZF-AA4X      TCGA-ZF-AA51 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA52      TCGA-ZF-AA53      TCGA-ZF-AA54      TCGA-ZF-AA56 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA58      TCGA-ZF-AA5H      TCGA-ZF-AA5N      TCGA-ZF-AA5P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COPZ2 MUTATED        1      0      1      0      0      0
  COPZ2 WILD-TYPE     73     47     87     65     27     81
D113V10, multiclass
[1] "Remove cluster labels:" "COPZ2 MUTATED"         
clus
  COPZ2 MUTATED COPZ2 WILD-TYPE 
              2             380 
     TCGA-2F-A9KO      TCGA-2F-A9KP      TCGA-2F-A9KQ      TCGA-2F-A9KR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-2F-A9KT      TCGA-2F-A9KW      TCGA-4Z-AA7M      TCGA-4Z-AA7N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA7O      TCGA-4Z-AA7Q      TCGA-4Z-AA7R      TCGA-4Z-AA7S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA7W      TCGA-4Z-AA7Y      TCGA-4Z-AA80      TCGA-4Z-AA81 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA82      TCGA-4Z-AA83      TCGA-4Z-AA84      TCGA-4Z-AA86 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-4Z-AA87      TCGA-4Z-AA89      TCGA-5N-A9KI      TCGA-5N-A9KM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BL-A0C8      TCGA-BL-A13I      TCGA-BL-A13J      TCGA-BL-A3JM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A0S7      TCGA-BT-A0YX      TCGA-BT-A20J      TCGA-BT-A20N 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20O      TCGA-BT-A20P      TCGA-BT-A20Q      TCGA-BT-A20R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20T      TCGA-BT-A20U      TCGA-BT-A20V      TCGA-BT-A20W 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A20X      TCGA-BT-A2LA      TCGA-BT-A2LB      TCGA-BT-A2LD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A3PH      TCGA-BT-A3PJ      TCGA-BT-A3PK      TCGA-BT-A42B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-BT-A42C      TCGA-BT-A42E      TCGA-BT-A42F      TCGA-C4-A0EZ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-C4-A0F0      TCGA-C4-A0F1      TCGA-C4-A0F6      TCGA-C4-A0F7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A1HR      TCGA-CF-A1HS      TCGA-CF-A27C      TCGA-CF-A3MF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A3MG      TCGA-CF-A3MH      TCGA-CF-A3MI      TCGA-CF-A47S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A47T      TCGA-CF-A47V      TCGA-CF-A47W      TCGA-CF-A47X 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A47Y      TCGA-CF-A5UA      TCGA-CF-A7I0      TCGA-CF-A9FF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CF-A9FH      TCGA-CF-A9FL      TCGA-CF-A9FM      TCGA-CU-A0YN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A0YO      TCGA-CU-A0YR      TCGA-CU-A3QU      TCGA-CU-A3YL 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-CU-A5W6      TCGA-CU-A72E      TCGA-DK-A1A3      TCGA-DK-A1A5 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1A6      TCGA-DK-A1A7      TCGA-DK-A1AA      TCGA-DK-A1AB 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A1AC      TCGA-DK-A1AE      TCGA-DK-A1AF      TCGA-DK-A1AG 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2HX      TCGA-DK-A2I1      TCGA-DK-A2I2      TCGA-DK-A2I4 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A2I6      TCGA-DK-A3IK      TCGA-DK-A3IL      TCGA-DK-A3IM 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IN      TCGA-DK-A3IQ      TCGA-DK-A3IS      TCGA-DK-A3IT 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3IU      TCGA-DK-A3IV      TCGA-DK-A3WW      TCGA-DK-A3WX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A3WY      TCGA-DK-A3X1      TCGA-DK-A3X2      TCGA-DK-A6AV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A6AW      TCGA-DK-A6B0      TCGA-DK-A6B1      TCGA-DK-A6B2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-A6B5      TCGA-DK-AA6L      TCGA-DK-AA6M      TCGA-DK-AA6P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA6Q      TCGA-DK-AA6R      TCGA-DK-AA6S      TCGA-DK-AA6T 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA6U      TCGA-DK-AA6W      TCGA-DK-AA6X      TCGA-DK-AA71 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-DK-AA74      TCGA-DK-AA75      TCGA-DK-AA76      TCGA-DK-AA77 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E5-A2PC      TCGA-E5-A4TZ      TCGA-E5-A4U1      TCGA-E7-A3X6 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A4IJ      TCGA-E7-A4XJ      TCGA-E7-A519      TCGA-E7-A541 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A5KE      TCGA-E7-A5KF      TCGA-E7-A677      TCGA-E7-A6MD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A6ME      TCGA-E7-A7DV      TCGA-E7-A7PW      TCGA-E7-A7XN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-E7-A85H      TCGA-E7-A97P      TCGA-E7-A97Q      TCGA-FD-A3B3 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B4      TCGA-FD-A3B5      TCGA-FD-A3B6      TCGA-FD-A3B7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3B8      TCGA-FD-A3N5      TCGA-FD-A3N6      TCGA-FD-A3NA 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SJ      TCGA-FD-A3SL      TCGA-FD-A3SM      TCGA-FD-A3SN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SO      TCGA-FD-A3SP      TCGA-FD-A3SQ      TCGA-FD-A3SR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A3SS      TCGA-FD-A43N      TCGA-FD-A43P      TCGA-FD-A43S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A43U      TCGA-FD-A43X      TCGA-FD-A5BR      TCGA-FD-A5BS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A5BT      TCGA-FD-A5BU      TCGA-FD-A5BV      TCGA-FD-A5BX 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A5BY      TCGA-FD-A5BZ      TCGA-FD-A5C0      TCGA-FD-A5C1 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A62N      TCGA-FD-A62O      TCGA-FD-A62P      TCGA-FD-A62S 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TA      TCGA-FD-A6TB      TCGA-FD-A6TC      TCGA-FD-A6TD 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TE      TCGA-FD-A6TF      TCGA-FD-A6TG      TCGA-FD-A6TH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FD-A6TI      TCGA-FD-A6TK      TCGA-FJ-A3Z7      TCGA-FJ-A3Z9 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FJ-A3ZE      TCGA-FJ-A3ZF      TCGA-FJ-A871      TCGA-FT-A3EE 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-FT-A61P      TCGA-G2-A2EC      TCGA-G2-A2EF      TCGA-G2-A2EJ 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A2EK      TCGA-G2-A2EL      TCGA-G2-A2EO      TCGA-G2-A2ES 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-G2-A3IE      TCGA-G2-AA3B      TCGA-G2-AA3D      TCGA-G2-AA3F 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3BM      TCGA-GC-A3I6      TCGA-GC-A3OO      TCGA-GC-A3RB 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A3RC      TCGA-GC-A3RD      TCGA-GC-A3WC      TCGA-GC-A3YS 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GC-A6I1      TCGA-GC-A6I3      TCGA-GD-A2C5      TCGA-GD-A3OP 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GD-A3OQ      TCGA-GD-A3OS      TCGA-GD-A6C6      TCGA-GD-A76B 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A42P      TCGA-GU-A42Q      TCGA-GU-A42R      TCGA-GU-A762 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-A763      TCGA-GU-A764      TCGA-GU-A766      TCGA-GU-A767 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GU-AATO      TCGA-GU-AATP      TCGA-GU-AATQ      TCGA-GV-A3JV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3JW      TCGA-GV-A3JX      TCGA-GV-A3JZ      TCGA-GV-A3QF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A3QG      TCGA-GV-A3QH      TCGA-GV-A3QI      TCGA-GV-A3QK 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-GV-A40E      TCGA-GV-A40G      TCGA-GV-A6ZA      TCGA-H4-A2HO 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-H4-A2HQ      TCGA-HQ-A2OE      TCGA-HQ-A2OF      TCGA-HQ-A5ND 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-HQ-A5NE      TCGA-K4-A3WS      TCGA-K4-A3WU      TCGA-K4-A3WV 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A4AB      TCGA-K4-A4AC      TCGA-K4-A54R      TCGA-K4-A5RH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-A5RI      TCGA-K4-A6FZ      TCGA-K4-A6MB      TCGA-K4-A83P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-K4-AAQO      TCGA-KQ-A41N      TCGA-KQ-A41O      TCGA-KQ-A41P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-KQ-A41Q      TCGA-KQ-A41R      TCGA-KQ-A41S      TCGA-LC-A66R 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-LT-A5Z6      TCGA-MV-A51V      TCGA-PQ-A6FI      TCGA-PQ-A6FN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-R3-A69X      TCGA-S5-A6DX      TCGA-S5-AA26      TCGA-SY-A9G0 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-SY-A9G5      TCGA-UY-A78K      TCGA-UY-A78L      TCGA-UY-A78M 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A78N      TCGA-UY-A78O      TCGA-UY-A8OB      TCGA-UY-A9PA 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A9PB      TCGA-UY-A9PD      TCGA-UY-A9PE      TCGA-UY-A9PF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-UY-A9PH      TCGA-XF-A8HH      TCGA-XF-A8HI      TCGA-XF-A9SG 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SH      TCGA-XF-A9SI      TCGA-XF-A9SJ      TCGA-XF-A9SK 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SL      TCGA-XF-A9SM      TCGA-XF-A9SP      TCGA-XF-A9SU 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SV      TCGA-XF-A9SW      TCGA-XF-A9SX      TCGA-XF-A9SY 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9SZ      TCGA-XF-A9T0      TCGA-XF-A9T2      TCGA-XF-A9T3 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-A9T4      TCGA-XF-A9T5      TCGA-XF-A9T6      TCGA-XF-A9T8 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAME      TCGA-XF-AAMF      TCGA-XF-AAMG      TCGA-XF-AAMH 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMJ      TCGA-XF-AAML      TCGA-XF-AAMQ      TCGA-XF-AAMR 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMT      TCGA-XF-AAMW      TCGA-XF-AAMX      TCGA-XF-AAMY 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAMZ      TCGA-XF-AAN0      TCGA-XF-AAN1      TCGA-XF-AAN2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAN3      TCGA-XF-AAN4      TCGA-XF-AAN5      TCGA-XF-AAN7 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-XF-AAN8      TCGA-YC-A8S6      TCGA-YC-A9TC      TCGA-YF-AA3L 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-YF-AA3M      TCGA-ZF-A9R0      TCGA-ZF-A9R1      TCGA-ZF-A9R2 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9R3      TCGA-ZF-A9R5      TCGA-ZF-A9R7      TCGA-ZF-A9R9 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9RC      TCGA-ZF-A9RD      TCGA-ZF-A9RE      TCGA-ZF-A9RF 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-A9RG      TCGA-ZF-A9RL      TCGA-ZF-A9RM      TCGA-ZF-A9RN 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA4N      TCGA-ZF-AA4R      TCGA-ZF-AA4T      TCGA-ZF-AA4U 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA4V      TCGA-ZF-AA4W      TCGA-ZF-AA4X      TCGA-ZF-AA51 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA52      TCGA-ZF-AA53      TCGA-ZF-AA54      TCGA-ZF-AA56 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 
     TCGA-ZF-AA58      TCGA-ZF-AA5H      TCGA-ZF-AA5N      TCGA-ZF-AA5P 
"COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" "COPZ2 WILD-TYPE" 

Clustering(114) Variable = ZNF791 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF791 MUTATED        3      4      2      1
  ZNF791 WILD-TYPE    159    133     57     33
D114V1, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              3              159
  CLUS_2              4              133
  CLUS_3              2               57
  CLUS_4              1               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF791 MUTATED        5      2      1      2
  ZNF791 WILD-TYPE    130    110     68     77
D114V2, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              5              130
  CLUS_2              2              110
  CLUS_3              1               68
  CLUS_4              2               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF791 MUTATED        0      0      2      0      0
  ZNF791 WILD-TYPE     37     29     34      5     20
D114V3, multiclass
[1] "Remove cluster labels:" "ZNF791 MUTATED"        
clus
  ZNF791 MUTATED ZNF791 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A3IK       TCGA-DK-A3IL 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-K4-A3WV 
"ZNF791 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF791 MUTATED        0      1      1      0
  ZNF791 WILD-TYPE     43     37     26     19
D114V4, multiclass
[1] "Remove cluster labels:" "ZNF791 MUTATED"        
clus
  ZNF791 MUTATED ZNF791 WILD-TYPE 
               2              125 
      TCGA-BL-A0C8       TCGA-BL-A13I       TCGA-BL-A13J       TCGA-BL-A3JM 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A0S7       TCGA-BT-A0YX       TCGA-BT-A20J       TCGA-BT-A20N 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20O       TCGA-BT-A20P       TCGA-BT-A20Q       TCGA-BT-A20R 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20T       TCGA-BT-A20U       TCGA-BT-A20V       TCGA-BT-A20W 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A20X       TCGA-BT-A2LA       TCGA-BT-A2LB       TCGA-BT-A2LD 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A3PH       TCGA-BT-A3PJ       TCGA-BT-A3PK       TCGA-BT-A42B 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-BT-A42C       TCGA-C4-A0EZ       TCGA-C4-A0F0       TCGA-C4-A0F1 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-C4-A0F6       TCGA-C4-A0F7       TCGA-CF-A1HR       TCGA-CF-A1HS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CF-A27C       TCGA-CF-A3MF       TCGA-CF-A3MG       TCGA-CF-A3MH 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CF-A3MI       TCGA-CU-A0YN       TCGA-CU-A3KJ       TCGA-CU-A3QU 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-CU-A3YL       TCGA-DK-A1A3       TCGA-DK-A1A5       TCGA-DK-A1A6 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A1AA       TCGA-DK-A1AB       TCGA-DK-A1AC       TCGA-DK-A1AD 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A1AE       TCGA-DK-A1AF       TCGA-DK-A1AG       TCGA-DK-A2HX 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A2I1       TCGA-DK-A2I2       TCGA-DK-A3IK       TCGA-DK-A3IL 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3IM       TCGA-DK-A3IN       TCGA-DK-A3IQ       TCGA-DK-A3IT 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3IU       TCGA-DK-A3IV       TCGA-DK-A3WW       TCGA-DK-A3WX 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-DK-A3WY       TCGA-DK-A3X1       TCGA-DK-A3X2       TCGA-E5-A2PC 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-E7-A3X6       TCGA-E7-A3Y1       TCGA-FD-A3B3       TCGA-FD-A3B4 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3B5       TCGA-FD-A3B6       TCGA-FD-A3B7       TCGA-FD-A3B8 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3N5       TCGA-FD-A3N6       TCGA-FD-A3NA       TCGA-FD-A3SJ 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3SL       TCGA-FD-A3SM       TCGA-FD-A3SN       TCGA-FD-A3SO 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FD-A3SP       TCGA-FD-A3SQ       TCGA-FD-A3SR       TCGA-FD-A3SS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-FJ-A3Z7       TCGA-FJ-A3ZE       TCGA-FJ-A3ZF       TCGA-G2-A2EC 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-G2-A2EF       TCGA-G2-A2EJ       TCGA-G2-A2EK       TCGA-G2-A2EL 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-G2-A2ES       TCGA-G2-A3IB       TCGA-G2-A3IE       TCGA-G2-A3VY 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GC-A3BM       TCGA-GC-A3I6       TCGA-GC-A3WC       TCGA-GC-A3YS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GD-A2C5       TCGA-GD-A3OP       TCGA-GD-A3OQ       TCGA-GD-A3OS 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GU-A42R       TCGA-GV-A3JV       TCGA-GV-A3JW       TCGA-GV-A3JZ 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GV-A3QF       TCGA-GV-A3QG       TCGA-GV-A3QH       TCGA-GV-A3QI 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-GV-A3QK       TCGA-GV-A40E       TCGA-GV-A40G       TCGA-H4-A2HO 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-H4-A2HQ       TCGA-HQ-A2OE       TCGA-K4-A3WS       TCGA-K4-A3WU 
"ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" "ZNF791 WILD-TYPE" 
      TCGA-K4-A3WV 
"ZNF791 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF791 MUTATED        7      1      2
  ZNF791 WILD-TYPE    107    172    102
D114V5, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              7              107
  CLUS_2              1              172
  CLUS_3              2              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF791 MUTATED        4      1      5
  ZNF791 WILD-TYPE    112    105    164
D114V6, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              4              112
  CLUS_2              1              105
  CLUS_3              5              164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF791 MUTATED        5      1      4
  ZNF791 WILD-TYPE    114     95    173
D114V7, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              5              114
  CLUS_2              1               95
  CLUS_3              4              173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF791 MUTATED        2      2      2      0      4
  ZNF791 WILD-TYPE     84     97     87     65     49
D114V8, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              2               84
  CLUS_2              2               97
  CLUS_3              2               87
  CLUS_4              0               65
  CLUS_5              4               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF791 MUTATED        2      0      1      7
  ZNF791 WILD-TYPE     91     43    126    112
D114V9, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              2               91
  CLUS_2              0               43
  CLUS_3              1              126
  CLUS_4              7              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF791 MUTATED        4      0      1      3      0      2
  ZNF791 WILD-TYPE     70     47     87     62     27     79
D114V10, multiclass
        clus
vv       ZNF791 MUTATED ZNF791 WILD-TYPE
  CLUS_1              4               70
  CLUS_2              0               47
  CLUS_3              1               87
  CLUS_4              3               62
  CLUS_5              0               27
  CLUS_6              2               79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = BUD13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUD13 MUTATED        2      6      2      1
  BUD13 WILD-TYPE    160    131     57     33
D115V1, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             2             160
  CLUS_2             6             131
  CLUS_3             2              57
  CLUS_4             1              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUD13 MUTATED        3      6      0      2
  BUD13 WILD-TYPE    132    106     69     77
D115V2, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             3             132
  CLUS_2             6             106
  CLUS_3             0              69
  CLUS_4             2              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUD13 MUTATED        2      2      1      0      1
  BUD13 WILD-TYPE     35     27     35      5     19
D115V3, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              27
  CLUS_3             1              35
  CLUS_4             0               5
  CLUS_5             1              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUD13 MUTATED        1      2      1      2
  BUD13 WILD-TYPE     42     36     26     17
D115V4, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             2              36
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUD13 MUTATED        4      6      1
  BUD13 WILD-TYPE    110    167    103
D115V5, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             4             110
  CLUS_2             6             167
  CLUS_3             1             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUD13 MUTATED        3      6      2
  BUD13 WILD-TYPE    113    100    167
D115V6, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             3             113
  CLUS_2             6             100
  CLUS_3             2             167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUD13 MUTATED        2      4      5
  BUD13 WILD-TYPE    117     92    172
D115V7, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             2             117
  CLUS_2             4              92
  CLUS_3             5             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUD13 MUTATED        1      5      1      3      1
  BUD13 WILD-TYPE     85     94     88     62     52
D115V8, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             1              85
  CLUS_2             5              94
  CLUS_3             1              88
  CLUS_4             3              62
  CLUS_5             1              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUD13 MUTATED        1      2      5      3
  BUD13 WILD-TYPE     92     41    122    116
D115V9, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             1              92
  CLUS_2             2              41
  CLUS_3             5             122
  CLUS_4             3             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BUD13 MUTATED        1      2      5      2      0      1
  BUD13 WILD-TYPE     73     45     83     63     27     80
D115V10, multiclass
        clus
vv       BUD13 MUTATED BUD13 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             2              45
  CLUS_3             5              83
  CLUS_4             2              63
  CLUS_5             0              27
  CLUS_6             1              80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = HES1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HES1 MUTATED        5      5      1      0
  HES1 WILD-TYPE    157    132     58     34
D116V1, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            5            157
  CLUS_2            5            132
  CLUS_3            1             58
  CLUS_4            0             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HES1 MUTATED        4      4      2      1
  HES1 WILD-TYPE    131    108     67     78
D116V2, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            4            131
  CLUS_2            4            108
  CLUS_3            2             67
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HES1 MUTATED        1      0      1      0      2
  HES1 WILD-TYPE     36     29     35      5     18
D116V3, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            1             36
  CLUS_2            0             29
  CLUS_3            1             35
  CLUS_4            0              5
  CLUS_5            2             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HES1 MUTATED        0      1      1      2
  HES1 WILD-TYPE     43     37     26     17
D116V4, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            0             43
  CLUS_2            1             37
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HES1 MUTATED        2      5      4
  HES1 WILD-TYPE    112    168    100
D116V5, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            2            112
  CLUS_2            5            168
  CLUS_3            4            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HES1 MUTATED        2      4      5
  HES1 WILD-TYPE    114    102    164
D116V6, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            2            114
  CLUS_2            4            102
  CLUS_3            5            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HES1 MUTATED        3      4      4
  HES1 WILD-TYPE    116     92    173
D116V7, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            3            116
  CLUS_2            4             92
  CLUS_3            4            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HES1 MUTATED        1      4      1      3      2
  HES1 WILD-TYPE     85     95     88     62     51
D116V8, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            4             95
  CLUS_3            1             88
  CLUS_4            3             62
  CLUS_5            2             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HES1 MUTATED        3      3      3      2
  HES1 WILD-TYPE     90     40    124    117
D116V9, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            3             90
  CLUS_2            3             40
  CLUS_3            3            124
  CLUS_4            2            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HES1 MUTATED        1      3      2      3      0      2
  HES1 WILD-TYPE     73     44     86     62     27     79
D116V10, multiclass
        clus
vv       HES1 MUTATED HES1 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            3             44
  CLUS_3            2             86
  CLUS_4            3             62
  CLUS_5            0             27
  CLUS_6            2             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = HORMAD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        2      6      0      3
  HORMAD1 WILD-TYPE    160    131     59     31
D117V1, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2               160
  CLUS_2               6               131
  CLUS_3               0                59
  CLUS_4               3                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        0      5      2      4
  HORMAD1 WILD-TYPE    135    107     67     75
D117V2, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               0               135
  CLUS_2               5               107
  CLUS_3               2                67
  CLUS_4               4                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        2      1      3      0      1
  HORMAD1 WILD-TYPE     35     28     33      5     19
D117V3, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                35
  CLUS_2               1                28
  CLUS_3               3                33
  CLUS_4               0                 5
  CLUS_5               1                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        3      2      1      1
  HORMAD1 WILD-TYPE     40     36     26     18
D117V4, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               3                40
  CLUS_2               2                36
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        2      6      3
  HORMAD1 WILD-TYPE    112    167    101
D117V5, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2               112
  CLUS_2               6               167
  CLUS_3               3               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        5      3      3
  HORMAD1 WILD-TYPE    111    103    166
D117V6, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               5               111
  CLUS_2               3               103
  CLUS_3               3               166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        0      5      6
  HORMAD1 WILD-TYPE    119     91    171
D117V7, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               0               119
  CLUS_2               5                91
  CLUS_3               6               171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        2      5      2      1      1
  HORMAD1 WILD-TYPE     84     94     87     64     52
D117V8, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                84
  CLUS_2               5                94
  CLUS_3               2                87
  CLUS_4               1                64
  CLUS_5               1                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        3      2      3      3
  HORMAD1 WILD-TYPE     90     41    124    116
D117V9, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               3                90
  CLUS_2               2                41
  CLUS_3               3               124
  CLUS_4               3               116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HORMAD1 MUTATED        2      2      2      1      1      3
  HORMAD1 WILD-TYPE     72     45     86     64     26     78
D117V10, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                72
  CLUS_2               2                45
  CLUS_3               2                86
  CLUS_4               1                64
  CLUS_5               1                26
  CLUS_6               3                78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = SND1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SND1 MUTATED        3      4      1      1
  SND1 WILD-TYPE    159    133     58     33
D118V1, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3            159
  CLUS_2            4            133
  CLUS_3            1             58
  CLUS_4            1             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SND1 MUTATED        3      3      2      1
  SND1 WILD-TYPE    132    109     67     78
D118V2, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3            132
  CLUS_2            3            109
  CLUS_3            2             67
  CLUS_4            1             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SND1 MUTATED        2      0      2      0      0
  SND1 WILD-TYPE     35     29     34      5     20
D118V3, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            0             29
  CLUS_3            2             34
  CLUS_4            0              5
  CLUS_5            0             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SND1 MUTATED        3      0      1      0
  SND1 WILD-TYPE     40     38     26     19
D118V4, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            0             38
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SND1 MUTATED        3      4      2
  SND1 WILD-TYPE    111    169    102
D118V5, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3            111
  CLUS_2            4            169
  CLUS_3            2            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SND1 MUTATED        4      1      4
  SND1 WILD-TYPE    112    105    165
D118V6, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            4            112
  CLUS_2            1            105
  CLUS_3            4            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SND1 MUTATED        3      1      5
  SND1 WILD-TYPE    116     95    172
D118V7, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3            116
  CLUS_2            1             95
  CLUS_3            5            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SND1 MUTATED        1      3      2      1      2
  SND1 WILD-TYPE     85     96     87     64     51
D118V8, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            1             85
  CLUS_2            3             96
  CLUS_3            2             87
  CLUS_4            1             64
  CLUS_5            2             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SND1 MUTATED        3      1      2      3
  SND1 WILD-TYPE     90     42    125    116
D118V9, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            3             90
  CLUS_2            1             42
  CLUS_3            2            125
  CLUS_4            3            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SND1 MUTATED        2      1      2      1      0      3
  SND1 WILD-TYPE     72     46     86     64     27     78
D118V10, multiclass
        clus
vv       SND1 MUTATED SND1 WILD-TYPE
  CLUS_1            2             72
  CLUS_2            1             46
  CLUS_3            2             86
  CLUS_4            1             64
  CLUS_5            0             27
  CLUS_6            3             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
