gene1	gene2	pval	qval
ARID1A	Del_11q23.3	0.00256	1
PIK3CA	Del_4q35.2	0.00882	1
ARID1A	Del_3p14.2	0.00968	1
PIK3CA	Amp_1q21.3	0.0115	1
Amp_11q22.1	Del_6q26	0.0128	1
PIK3CA	4q-Del	0.0135	1
PTEN	Del_2q37.1	0.0148	1
Amp_3q28	Amp_11q22.1	0.0162	1
ARID1A	Del_11q25	0.0187	1
11q-Del	Amp_13q22.1	0.0191	1
PIK3CA	Del_5q35.2	0.0203	1
STK11	Amp_3q28	0.0207	1
FBXW7	Del_11q25	0.0208	1
STK11	Amp_3q26.31	0.0219	1
FBXW7	Del_11q23.3	0.0258	1
KRAS	Del_3p14.2	0.0271	1
Amp_1p31.3	Del_3p14.2	0.0277	1
11q-Del	Amp_19q13.13	0.0284	1
1p-Amp	11q-Del	0.0303	1
PIK3CA	3p-Del	0.0309	1
4p-Del	Amp_16p13.13	0.031	1
Amp_1p31.3	Del_13q14.2	0.0339	1
PIK3CA	Amp_5p15.33	0.034	1
20p-Amp	Amp_11q22.1	0.037	1
1p-Amp	Del_3p14.2	0.0371	1
PIK3CA	1q-Amp	0.0394	1
1p-Amp	Del_13q14.2	0.0418	1
MUC4	Del_22q13.32	0.0421	1
11q-Del	Amp_11q22.1	0.0423	1
3p-Del	Amp_1p31.3	0.0425	1
Amp_1p31.3	Del_4q35.2	0.0425	1
Amp_1p31.3	Del_13q12.11	0.0425	1
20p-Amp	Del_2q37.1	0.0441	1
KRAS	Del_2q37.1	0.0475	1
17p-Del	Amp_1p31.3	0.0475	1
ARID1A	5p-Amp	0.0478	1
ARID1A	11q-Del	0.0478	1
10q-Del	Amp_1q21.3	0.0492	1
PTEN	Del_3p14.2	0.0495	1
Amp_3q26.31	Amp_11q22.1	0.0512	1
1p-Amp	3p-Del	0.0517	1
1p-Amp	Del_4q35.2	0.0517	1
1p-Amp	Del_13q12.11	0.0517	1
PIK3CA	Del_5q12.1	0.0556	1
PTPRC	Amp_3q28	0.0563	1
HLA-A	4p-Del	0.0568	1
4p-Del	Amp_13q34	0.0568	1
4p-Del	Amp_Xq28	0.0568	1
Amp_11q22.1	Del_16q23.1	0.0574	1
Del_5q35.2	Del_16q23.1	0.0574	1
Del_11q25	Del_22q13.32	0.0586	1
HLA-B	Del_11q25	0.0588	1
MED1	Del_11q25	0.0588	1
NHS	Amp_1q44	0.0588	1
PTPRC	Amp_3q26.31	0.0601	1
PIK3CA	Amp_15q26.1	0.0604	1
18q-Del	Amp_3q28	0.061	1
Amp_Xq28	Del_4q35.2	0.0627	1
Del_13q12.11	Del_22q13.32	0.0627	1
ARID1A	Del_13q14.2	0.0633	1
ARID1A	Amp_5p15.33	0.0656	1
Del_3p14.2	Del_14q32.31	0.0656	1
18q-Del	Amp_3q26.31	0.0669	1
PIK3CA	4p-Del	0.0675	1
HLA-B	Del_11q23.3	0.0677	1
MED1	Del_11q23.3	0.0677	1
SEMA4B	3q-Amp	0.0678	1
KRAS	Amp_3q28	0.0692	1
Del_11q23.3	Del_22q13.32	0.0692	1
PIK3CA	Amp_21q22.13	0.0701	1
Amp_13q22.1	Del_10q23.31	0.0703	1
PIK3CA	Amp_11q22.1	0.0705	1
PIK3CA	5p-Amp	0.071	1
3q-Amp	Del_20p12.1	0.0715	1
KRAS	Amp_3q26.31	0.0742	1
MTOR	Del_3p14.2	0.0743	1
ZNF578	Del_11q25	0.0753	1
SMAD4	Del_11q25	0.0753	1
ARID1A	3p-Del	0.076	1
ARID1A	Del_13q12.11	0.076	1
3p-Del	Del_14q32.31	0.076	1
ANKRD12	Amp_3q28	0.0773	1
PIK3CA	13q-Del	0.0773	1
Amp_1q21.3	Del_20p12.1	0.0785	1
Amp_16p13.13	Del_5q12.1	0.0788	1
ANKRD12	Amp_3q26.31	0.0813	1
FBXW7	Del_17p12	0.0815	1
10q-Del	Amp_1q44	0.0815	1
18q-Del	Amp_1q44	0.0815	1
Amp_1p31.3	Del_10q23.31	0.0821	1
3q-Amp	Del_13q12.11	0.0824	1
ANKRD12	Del_11q23.3	0.083	1
ZNF578	Del_11q23.3	0.083	1
SMAD4	Del_11q23.3	0.083	1
ARID1A	17p-Del	0.0833	1
MAPK1	Del_2q37.1	0.0839	1
ERBB2	Del_11q25	0.0847	1
Amp_16p13.13	Del_3p14.2	0.0847	1
Amp_11q22.1	Amp_20q11.21	0.0868	1
Amp_13q22.1	Del_11q23.3	0.088	1
PIK3CA	Amp_1q44	0.0887	1
PIK3CA	Del_7q34	0.0889	1
20p-Amp	Del_17q25.3	0.0915	1
Amp_1p31.3	Del_5q12.1	0.0915	1
20q-Amp	Del_7q34	0.0929	1
Amp_1q21.3	Del_16q11.2	0.0935	1
MED1	11q-Del	0.0938	1
MED1	Del_8p23.3	0.0938	1
1q-Amp	Del_4q35.2	0.0943	1
ERBB2	Del_11q23.3	0.0959	1
PIK3CA	Del_11q25	0.0964	1
EP300	Del_18q21.2	0.0966	1
Del_4q21.3	Del_6p24.2	0.0971	1
4p-Del	Del_16q23.1	0.0976	1
PIK3CA	19p-Del	0.0984	1
Amp_16p13.13	Del_7q34	0.0988	1
PIK3CA	5q-Del	0.0991	1
PIK3CA	Amp_17q25.1	0.0991	1
Amp_1p31.3	Del_17p12	0.0995	1
Amp_1q44	Del_17q25.3	0.0995	1
ANKRD12	3q-Amp	0.1	1
KRAS	MUC4	0.101	1
5q-Del	Amp_3q26.31	0.102	1
6q-Del	Amp_11q22.1	0.102	1
Amp_1p31.3	Del_5q35.2	0.102	1
3q-Amp	17p-Del	0.103	1
Amp_2p24.3	Del_13q14.2	0.103	1
Amp_20q11.21	Del_7q34	0.105	1
PIK3CA	Del_1p36.23	0.106	1
20p-Amp	Del_20p12.1	0.106	1
Amp_1q21.3	Del_4q35.2	0.106	1
FBXW7	11q-Del	0.109	1
PIK3CA	Amp_3q28	0.109	1
3p-Del	Del_16q23.1	0.109	1
FBXW7	Del_16q11.2	0.111	1
Amp_16p13.13	Del_4q21.3	0.111	1
PTEN	Amp_19q13.13	0.112	1
Amp_13q34	Del_10q23.31	0.112	1
Amp_1p31.3	Del_7q34	0.113	1
Amp_17q12	Del_3p14.2	0.113	1
ARID1A	Del_2q37.1	0.114	1
MAPK1	Amp_8q24.21	0.115	1
4p-Del	Del_18q21.2	0.115	1
MED1	Del_8p23.1	0.117	1
1p-Amp	Del_5q35.2	0.117	1
NHS	1q-Amp	0.12	1
17p-Del	Del_1p36.23	0.12	1
MAPK1	Del_11q25	0.121	1
RB1	Del_11q25	0.121	1
Amp_1q44	Del_20p12.1	0.121	1
MAPK1	Amp_1q44	0.122	1
FBXW7	3q-Amp	0.123	1
20p-Amp	Amp_6p21.33	0.123	1
3q-Amp	18q-Del	0.123	1
4q-Del	Del_6p24.2	0.123	1
Del_4q22.1	Del_6p24.2	0.123	1
EP300	18q-Del	0.124	1
13q-Del	Amp_2p24.3	0.124	1
FAT2	4p-Del	0.125	1
5q-Del	Del_16q23.1	0.126	1
Amp_1p31.3	Del_4q21.3	0.126	1
Amp_1p31.3	Del_16q11.2	0.126	1
Amp_1p31.3	Del_16q23.1	0.126	1
Amp_17q25.1	Del_16q11.2	0.126	1
ARID1A	Del_10q23.31	0.13	1
11q-Del	Amp_1p31.3	0.13	1
Amp_15q26.1	Del_10q23.31	0.13	1
PIK3CA	Del_11q23.3	0.132	1
HLA-B	Del_4q35.2	0.134	1
HLA-B	Del_6q26	0.134	1
KRAS	3p-Del	0.134	1
KRAS	Del_4q35.2	0.134	1
MAPK1	Del_11q23.3	0.134	1
RB1	Del_11q23.3	0.134	1
PTEN	Amp_11q22.1	0.135	1
Amp_11q22.1	Del_22q13.32	0.135	1
ARID1A	Amp_3q28	0.136	1
PIK3CA	3q-Amp	0.136	1
4q-Del	Amp_16p13.13	0.138	1
Amp_16p13.13	Del_4q22.1	0.138	1
PIK3CA	Amp_11q13.3	0.139	1
1q-Amp	Del_18q21.2	0.14	1
Amp_1p31.3	Del_18q21.2	0.14	1
ARID1A	Del_5q12.1	0.142	1
MUC4	Amp_17q25.1	0.142	1
Amp_3q28	Del_20p12.1	0.142	1
Del_5q12.1	Del_14q32.31	0.142	1
FBXW7	Del_13q14.2	0.143	1
PIK3CA	Del_3p14.2	0.143	1
1p-Amp	Del_4q21.3	0.143	1
1p-Amp	Del_16q11.2	0.143	1
3q-Amp	Del_17p12	0.143	1
ERBB3	1q-Amp	0.144	1
SMAD4	Del_3p14.2	0.144	1
ARID1A	Amp_3q26.31	0.145	1
MAPK1	5p-Amp	0.146	1
MAPK1	Del_8p23.3	0.146	1
RB1	Del_8p23.3	0.146	1
FBXW7	Amp_3q28	0.147	1
5p-Amp	Amp_11q22.1	0.147	1
Amp_11q22.1	Del_8p23.3	0.147	1
Amp_Xq28	Del_17p12	0.147	1
STK11	3q-Amp	0.148	1
Del_8p23.1	Del_10q23.31	0.15	1
NFE2L2	11p-Del	0.151	1
Amp_1q44	Del_16q11.2	0.151	1
Amp_3q28	Del_18q21.2	0.151	1
Amp_20q11.21	Del_13q12.11	0.151	1
Amp_3q26.31	Del_20p12.1	0.153	1
FBXW7	10q-Del	0.154	1
10q-Del	Amp_13q22.1	0.154	1
10q-Del	Amp_16p13.13	0.154	1
ARID1A	Amp_11q22.1	0.155	1
ARID1A	Del_5q35.2	0.155	1
KRAS	Del_11p15.1	0.155	1
MAPK1	MUC4	0.155	1
MTOR	Del_17p12	0.155	1
MUC4	22q-Del	0.155	1
MUC4	Del_19q13.33	0.155	1
MED1	Del_11p15.1	0.155	1
4q-Del	Amp_1p31.3	0.155	1
4q-Del	Amp_17q25.1	0.155	1
Amp_1p31.3	Del_4q22.1	0.155	1
Amp_1p31.3	Del_6p24.2	0.155	1
Amp_17q25.1	Del_4q22.1	0.155	1
3q-Amp	5q-Del	0.157	1
18q-Del	4p-Del	0.157	1
FBXW7	Amp_3q26.31	0.158	1
1p-Amp	Del_18q21.2	0.158	1
PIK3CA	Amp_6p21.33	0.159	1
8p-Del	Del_10q23.31	0.159	1
ERBB2	3p-Del	0.162	1
ERBB2	Del_4q35.2	0.162	1
ERBB2	Del_13q12.11	0.162	1
PTEN	Del_16q11.2	0.162	1
ZNF750	20q-Amp	0.162	1
ZNF750	3p-Del	0.162	1
ZNF750	Del_4q35.2	0.162	1
ZNF750	Del_6q26	0.162	1
Amp_6p21.33	Del_16q11.2	0.162	1
Amp_13q34	Del_4q21.3	0.162	1
Amp_Xq28	Del_4q21.3	0.162	1
Del_4q21.3	Del_22q13.32	0.162	1
EP300	Amp_3q26.31	0.163	1
Amp_3q26.31	Del_18q21.2	0.163	1
Amp_20q11.21	Del_10q23.31	0.165	1
PTPRC	3q-Amp	0.166	1
18q-Del	Amp_1q21.3	0.167	1
Amp_19q13.13	Del_11q25	0.168	1
ARID1A	Del_7q34	0.169	1
MTOR	Del_11q25	0.17	1
PIK3CA	Del_4q22.1	0.17	1
SEMA4B	Amp_3q28	0.17	1
19p-Del	Amp_3q28	0.17	1
HLA-A	Del_11q25	0.171	1
3p-Del	Amp_16p13.13	0.171	1
Amp_16p13.13	Del_6q26	0.171	1
Amp_16p13.13	Del_13q12.11	0.171	1
FBXW7	Amp_9p24.1	0.172	1
10q-Del	Amp_1p31.3	0.172	1
13q-Del	Amp_1p31.3	0.172	1
18q-Del	Amp_1p31.3	0.172	1
5q-Del	Amp_16p13.13	0.172	1
MAPK1	Del_8p23.1	0.174	1
PTPRC	Del_13q14.2	0.174	1
RB1	Del_8p23.1	0.174	1
TP53	Del_13q14.2	0.174	1
1p-Amp	4q-Del	0.174	1
1p-Amp	Del_4q22.1	0.174	1
22q-Del	Del_13q14.2	0.174	1
NFE2L2	Amp_19q13.13	0.176	1
ARID1A	Del_17p12	0.177	1
Amp_15q26.1	Del_17p12	0.177	1
HLA-A	Amp_2p24.3	0.178	1
HLA-A	Del_18q21.2	0.178	1
KRAS	11p-Del	0.178	1
PTEN	Amp_2p24.3	0.178	1
PTEN	Del_18q21.2	0.178	1
MED1	11p-Del	0.178	1
SEMA4B	Amp_3q26.31	0.178	1
19p-Del	Amp_3q26.31	0.178	1
PIK3CA	Del_13q12.11	0.179	1
USP28	Del_11q25	0.18	1
Amp_19q13.13	Del_7q34	0.18	1
MTOR	11q-Del	0.182	1
Amp_8q24.21	Del_10q23.31	0.182	1
3q-Amp	Del_18q21.2	0.183	1
4p-Del	Amp_1p31.3	0.183	1
HLA-A	Del_8p23.3	0.184	1
PTEN	5p-Amp	0.184	1
Amp_7p11.2	Del_16q23.1	0.184	1
PTPRC	4p-Del	0.185	1
20q-Amp	Del_10q23.31	0.185	1
MTOR	Del_11q23.3	0.186	1
Amp_1p31.3	Del_2q37.1	0.186	1
Amp_17q25.1	Del_2q37.1	0.186	1
FBXW7	17p-Del	0.187	1
1q-Amp	10q-Del	0.187	1
1q-Amp	18q-Del	0.187	1
Amp_13q22.1	Del_11q25	0.187	1
NHS	Amp_1q21.3	0.189	1
Amp_1q44	Del_4q35.2	0.189	1
ERBB2	Del_3p14.2	0.19	1
NHS	Del_5q12.1	0.19	1
ZNF750	Del_3p14.2	0.19	1
5q-Del	Amp_1p31.3	0.19	1
6q-Del	Amp_1p31.3	0.19	1
6q-Del	Amp_9p24.1	0.19	1
6q-Del	Amp_17q25.1	0.19	1
1p-Amp	13q-Del	0.191	1
1p-Amp	18q-Del	0.191	1
USP28	Del_11q23.3	0.192	1
Amp_8q24.21	Del_6p24.2	0.193	1
ANKRD12	Del_2q37.1	0.195	1
HLA-A	4q-Del	0.195	1
HLA-A	Del_11q23.3	0.195	1
SMAD4	Del_2q37.1	0.195	1
4q-Del	Amp_Xq28	0.195	1
Amp_Xq28	Del_4q22.1	0.195	1
Del_4q22.1	Del_22q13.32	0.195	1
MAPK1	3p-Del	0.196	1
MAPK1	Del_6q26	0.196	1
PTPRC	3p-Del	0.196	1
PTPRC	Del_13q12.11	0.196	1
RB1	Del_4q35.2	0.196	1
20q-Amp	22q-Del	0.196	1
22q-Del	Del_13q12.11	0.196	1
Del_6q26	Del_19q13.33	0.196	1
Amp_11q22.1	Del_13q14.2	0.197	1
MUC4	Amp_6p21.33	0.198	1
MUC4	Amp_Xq28	0.198	1
20q-Amp	Del_17q25.3	0.198	1
8q-Amp	3p-Del	0.198	1
Amp_1p31.3	Del_6q26	0.198	1
Amp_17q25.1	Del_4q35.2	0.198	1
Amp_17q25.1	Del_6q26	0.198	1
Amp_19q13.13	Del_11q23.3	0.198	1
Del_4q35.2	Del_17q25.3	0.198	1
20p-Amp	Del_7q34	0.199	1
EP300	Amp_7p11.2	0.2	1
Amp_1q44	Del_8p23.3	0.2	1
ERBB3	Del_11q25	0.201	1
FAT2	Del_11q25	0.201	1
IDS	Amp_1q21.3	0.203	1
Amp_1q21.3	Del_7q34	0.203	1
KRAS	Amp_19q13.13	0.204	1
MED1	Del_10q23.31	0.204	1
Amp_2q33.1	Del_10q23.31	0.204	1
Amp_11q22.1	Amp_17q12	0.204	1
Amp_16p13.13	Del_11p15.1	0.204	1
PIK3CA	Amp_3q26.31	0.207	1
PTPRC	1q-Amp	0.207	1
1q-Amp	22q-Del	0.207	1
3q-Amp	Amp_11q22.1	0.207	1
4q-Del	Amp_1q44	0.209	1
Amp_13q22.1	Amp_20q11.21	0.21	1
1p-Amp	5q-Del	0.211	1
1p-Amp	6q-Del	0.211	1
5q-Del	Amp_3q28	0.211	1
6q-Del	Del_15q21.1	0.211	1
Amp_1p31.3	Del_15q21.1	0.211	1
Amp_1p31.3	Del_20p12.1	0.211	1
Amp_9p24.1	Del_20p12.1	0.211	1
MTOR	Del_13q14.2	0.212	1
TRIM9	Del_13q14.2	0.212	1
1p-Amp	4p-Del	0.212	1
20q-Amp	Del_6q26	0.212	1
20q-Amp	Del_13q12.11	0.212	1
FBXW7	PTEN	0.213	1
FBXW7	Amp_6p21.33	0.213	1
FBXW7	Del_2q22.1	0.213	1
HLA-A	18q-Del	0.213	1
PTEN	18q-Del	0.213	1
PTEN	Amp_13q22.1	0.213	1
PTEN	Amp_16p13.13	0.213	1
10q-Del	Amp_13q34	0.213	1
10q-Del	Del_2q22.1	0.213	1
13q-Del	Del_22q13.32	0.213	1
Amp_3q28	Del_16q23.1	0.213	1
Amp_13q22.1	Del_22q13.32	0.213	1
Amp_16p13.13	Del_2q22.1	0.213	1
1q-Amp	5q-Del	0.215	1
3q-Amp	Amp_8q24.21	0.216	1
5p-Amp	Amp_7p11.2	0.217	1
11q-Del	Amp_7p11.2	0.217	1
ARID1A	Del_6p24.2	0.218	1
KRAS	Del_5q12.1	0.219	1
MAPK1	Del_11p15.1	0.219	1
PTPRC	Del_11p15.1	0.219	1
Amp_2q33.1	Del_5q12.1	0.219	1
NFE2L2	Del_7q34	0.22	1
PTEN	Amp_3q26.31	0.22	1
NHS	Del_7q34	0.22	1
8p-Del	Del_7q34	0.221	1
Del_5q12.1	Del_16q11.2	0.222	1
Del_5q12.1	Del_16q23.1	0.222	1
ERBB3	Del_11q23.3	0.223	1
FAT2	Del_11q23.3	0.223	1
Del_7q34	Del_8p23.1	0.225	1
5p-Amp	Del_1p13.2	0.226	1
11q-Del	Del_Xp11.3	0.226	1
Amp_2p24.3	Del_10q23.31	0.226	1
Amp_19q13.13	Del_18q21.2	0.226	1
PIK3CA	Del_2q37.1	0.227	1
HLA-A	Del_8p23.1	0.228	1
HLA-A	Del_13q14.2	0.228	1
3p-Del	Del_15q21.1	0.228	1
Amp_Xq28	Del_8p23.1	0.228	1
5p-Amp	Del_18q21.2	0.229	1
ERBB3	Amp_1q21.3	0.232	1
MUC4	Amp_7p11.2	0.232	1
1p-Amp	Del_20p12.1	0.232	1
Amp_9p24.1	Del_11p15.1	0.232	1
HLA-A	8q-Amp	0.233	1
HLA-A	6q-Del	0.233	1
HLA-A	Amp_17q25.1	0.233	1
6q-Del	Amp_6p21.33	0.233	1
Amp_1p31.3	Del_2q22.1	0.233	1
Amp_1p31.3	Del_22q13.32	0.233	1
Amp_6p21.33	Del_17q25.3	0.233	1
Amp_9p24.1	Amp_Xq28	0.233	1
KRAS	8p-Del	0.234	1
KRAS	Amp_11q22.1	0.234	1
KRAS	Del_5q35.2	0.234	1
MED1	8p-Del	0.234	1
Amp_2q33.1	Del_5q35.2	0.234	1
MTOR	Del_13q12.11	0.236	1
MUC4	Del_Xp11.3	0.236	1
NFE2L2	Del_4q21.3	0.236	1
NFE2L2	Del_16q11.2	0.236	1
NFE2L2	Del_16q23.1	0.236	1
TRIM9	3p-Del	0.236	1
TRIM9	Del_13q12.11	0.236	1
ARID1A	10q-Del	0.237	1
ARID1A	13q-Del	0.237	1
20q-Amp	Amp_11q22.1	0.237	1
10q-Del	Amp_15q26.1	0.237	1
13q-Del	Del_14q32.31	0.237	1
ANKRD12	Amp_8q24.21	0.239	1
Amp_8q24.21	Del_1p36.23	0.24	1
MAPK1	Amp_5p15.33	0.243	1
MAPK1	Del_3p14.2	0.243	1
4p-Del	Amp_6p21.33	0.245	1
Amp_11q22.1	Del_16q11.2	0.245	1
Del_5q35.2	Del_16q11.2	0.245	1
MAPK1	11p-Del	0.246	1
PTPRC	11p-Del	0.246	1
1p-Amp	17p-Del	0.246	1
1q-Amp	Del_20p12.1	0.246	1
PTEN	3q-Amp	0.247	1
3q-Amp	Amp_Xq28	0.247	1
3q-Amp	Del_22q13.32	0.247	1
Amp_9p24.1	Amp_20q11.21	0.247	1
Del_2q37.1	Del_10q23.31	0.247	1
MTOR	17p-Del	0.248	1
MUC4	Amp_1q21.3	0.248	1
20p-Amp	Del_18q21.2	0.248	1
IDS	Amp_1q44	0.249	1
SMAD4	Del_17p12	0.249	1
HLA-B	Del_7q34	0.25	1
KRAS	Del_7q34	0.25	1
FAT2	Del_7q34	0.25	1
3q-Amp	Del_7q34	0.25	1
PIK3CA	Del_10q23.31	0.251	1
PIK3CA	Del_4q21.3	0.252	1
PIK3CA	Del_16q23.1	0.252	1
ZNF750	20p-Amp	0.252	1
ZNF750	Del_5q12.1	0.252	1
EP300	Del_1p36.23	0.254	1
NFE2L2	Amp_2p24.3	0.254	1
NFE2L2	Del_18q21.2	0.254	1
HLA-A	Del_20p12.1	0.255	1
PTEN	1p-Amp	0.255	1
PTEN	Del_20p12.1	0.255	1
1p-Amp	Del_2q22.1	0.255	1
1p-Amp	Del_22q13.32	0.255	1
Amp_6p21.33	Del_20p12.1	0.255	1
Amp_Xq28	Del_20p12.1	0.255	1
TCTE1	Del_2q37.1	0.257	1
5p-Amp	3p-Del	0.257	1
5p-Amp	Del_6q26	0.257	1
ARID1A	5q-Del	0.258	1
ARID1A	Amp_17q25.1	0.258	1
8q-Amp	Del_14q32.31	0.258	1
5q-Del	Del_14q32.31	0.258	1
Del_14q32.31	Del_17q25.3	0.258	1
1q-Amp	Amp_11q22.1	0.259	1
1q-Amp	Del_5q35.2	0.259	1
MTOR	Del_11p15.1	0.261	1
TRIM9	Del_11p15.1	0.261	1
HLA-A	Del_4q35.2	0.262	1
PTEN	3p-Del	0.262	1
20q-Amp	Amp_6p21.33	0.262	1
5p-Amp	Del_10q23.31	0.262	1
3p-Del	Amp_Xq28	0.262	1
Amp_Xq28	Del_6q26	0.262	1
Amp_1q44	Amp_11q22.1	0.263	1
Amp_1q44	Del_5q35.2	0.263	1
ZNF750	Del_11q25	0.265	1
1p-Amp	Del_11p15.1	0.265	1
Amp_Xq28	Del_2q37.1	0.267	1
ERBB2	Amp_11q22.1	0.268	1
HLA-B	Del_4q21.3	0.268	1
KRAS	Del_4q21.3	0.268	1
MED1	Del_4q21.3	0.268	1
MED1	Del_16q11.2	0.268	1
MED1	Del_16q23.1	0.268	1
ZNF750	Amp_11q22.1	0.268	1
Amp_1q21.3	Del_10q23.31	0.268	1
Del_7q34	Del_16q11.2	0.269	1
FAT2	3q-Amp	0.27	1
Del_3p14.2	Del_16q23.1	0.27	1
EP300	8p-Del	0.271	1
11p-Del	Amp_1p31.3	0.271	1
11p-Del	Amp_9p24.1	0.271	1
Amp_5p15.33	Del_10q23.31	0.271	1
NFE2L2	4q-Del	0.273	1
NFE2L2	Del_4q22.1	0.273	1
Del_1p36.23	Del_6p24.2	0.273	1
MAPK1	Amp_19q13.13	0.275	1
PTPRC	Del_10q23.31	0.275	1
TP53	Del_10q23.31	0.275	1
C3orf70	Del_3p14.2	0.277	1
BAP1	Amp_5p15.33	0.277	1
4p-Del	Del_16q11.2	0.277	1
HLA-A	Amp_Xq28	0.279	1
PTEN	Amp_13q34	0.279	1
PTEN	Amp_Xq28	0.279	1
PTEN	Del_2q22.1	0.279	1
5p-Amp	11q-Del	0.279	1
Amp_3q28	Amp_11p12	0.279	1
Amp_6p21.33	Del_2q22.1	0.279	1
Amp_Xq28	Del_22q13.32	0.279	1
Del_2q22.1	Del_22q13.32	0.279	1
ANKRD12	11q-Del	0.28	1
ANKRD12	Del_8p23.3	0.28	1
ZNF578	11q-Del	0.28	1
SMAD4	11q-Del	0.28	1
ARID1A	Del_20p12.1	0.281	1
PTEN	1q-Amp	0.281	1
1p-Amp	Amp_7p11.2	0.281	1
1q-Amp	Del_22q13.32	0.281	1
17p-Del	Amp_Xq28	0.281	1
Amp_7p11.2	Del_20p12.1	0.281	1
Amp_15q26.1	Del_20p12.1	0.281	1
Del_14q32.31	Del_20p12.1	0.281	1
ARID1A	4p-Del	0.282	1
FBXW7	Del_10q23.31	0.283	1
PTEN	Amp_1q21.3	0.283	1
SEMA4B	Del_4q35.2	0.283	1
SEMA4B	Del_6q26	0.283	1
18q-Del	Amp_19q13.13	0.283	1
5q-Del	Amp_1q44	0.283	1
6q-Del	Amp_1q44	0.283	1
Amp_1q21.3	Del_22q13.32	0.283	1
Amp_11q22.1	Del_11p15.1	0.283	1
Del_1p13.2	Del_4q35.2	0.283	1
Del_6q26	Del_Xp11.3	0.283	1
ZNF750	Del_7q34	0.285	1
EP300	Amp_11q13.3	0.286	1
KRAS	Amp_2p24.3	0.286	1
MED1	Del_18q21.2	0.286	1
Amp_1q44	Del_8p23.1	0.286	1
EP300	Amp_3q28	0.287	1
ERBB3	Amp_8q24.21	0.287	1
Amp_8q24.21	Amp_11q13.3	0.287	1
MTOR	11p-Del	0.288	1
TRIM9	11p-Del	0.288	1
Amp_3q26.31	Amp_11p12	0.288	1
ZNF750	Del_11q23.3	0.289	1
Amp_2p24.3	Del_8p23.1	0.289	1
CASP8	Del_5q12.1	0.29	1
MAPK1	Del_5q12.1	0.29	1
PTPRC	20p-Amp	0.29	1
TP53	Del_5q12.1	0.29	1
1q-Amp	Del_7q34	0.29	1
20p-Amp	22q-Del	0.29	1
22q-Del	Del_5q12.1	0.29	1
ZNF750	Amp_3q28	0.292	1
1p-Amp	Del_11q25	0.293	1
FBXW7	NFE2L2	0.294	1
FBXW7	Del_1p36.23	0.294	1
NFE2L2	18q-Del	0.294	1
STK11	Amp_20q11.21	0.294	1
NHS	Amp_13q22.1	0.294	1
13q-Del	Del_1p36.23	0.294	1
Amp_13q22.1	Del_1p36.23	0.294	1
SEMA4B	1q-Amp	0.296	1
1q-Amp	19p-Del	0.296	1
3q-Amp	19p-Del	0.296	1
PIK3CA	Amp_2p24.3	0.298	1
Amp_3q26.31	Amp_21q22.13	0.298	1
3q-Amp	Del_16q23.1	0.299	1
3p-Del	Del_16q11.2	0.299	1
ARID1A	Del_4q35.2	0.3	1
FBXW7	5p-Amp	0.3	1
NFE2L2	11q-Del	0.3	1
5p-Amp	18q-Del	0.3	1
11q-Del	Amp_5p15.33	0.3	1
3p-Del	Amp_15q26.1	0.3	1
Amp_1q44	Del_7q34	0.3	1
Amp_6p21.33	Del_11p15.1	0.3	1
Amp_11q22.1	Del_6p24.2	0.3	1
Amp_16p13.13	Del_8p23.3	0.3	1
Amp_Xq28	Del_11p15.1	0.3	1
Amp_3q26.31	Del_5q12.1	0.301	1
ERBB3	Amp_1q44	0.302	1
PIK3CA	1p-Amp	0.302	1
MED1	Del_17p12	0.302	1
PIK3CA	Amp_17q12	0.303	1
PIK3CA	Del_17p12	0.303	1
ZNF750	Del_4q21.3	0.303	1
ZNF750	Del_16q11.2	0.303	1
STK11	Amp_8q24.21	0.304	1
TCTE1	Amp_8q24.21	0.304	1
ZNF750	Amp_3q26.31	0.304	1
ARID1A	3q-Amp	0.305	1
ARID1A	Amp_6p21.33	0.305	1
ARID1A	Amp_Xq28	0.305	1
ARID1A	Del_2q22.1	0.305	1
HLA-A	Amp_7p11.2	0.305	1
HLA-A	Del_14q32.31	0.305	1
PTEN	Amp_7p11.2	0.305	1
PTEN	Amp_15q26.1	0.305	1
PTEN	Del_14q32.31	0.305	1
1p-Amp	11p-Del	0.305	1
3q-Amp	3p-Del	0.305	1
Amp_7p11.2	Amp_Xq28	0.305	1
Amp_7p11.2	Del_2q22.1	0.305	1
Amp_7p11.2	Del_22q13.32	0.305	1
Del_2q22.1	Del_14q32.31	0.305	1
HLA-B	4q-Del	0.306	1
HLA-B	Del_6p24.2	0.306	1
KRAS	Del_4q22.1	0.306	1
MED1	4q-Del	0.306	1
MED1	Del_4q22.1	0.306	1
20p-Amp	18q-Del	0.306	1
CASP8	Del_5q35.2	0.307	1
MAPK1	8p-Del	0.307	1
MAPK1	Amp_11q22.1	0.307	1
MAPK1	Del_5q35.2	0.307	1
PTPRC	Del_5q35.2	0.307	1
RB1	8p-Del	0.307	1
RB1	Amp_11q22.1	0.307	1
TP53	Amp_11q22.1	0.307	1
TP53	Del_5q35.2	0.307	1
22q-Del	Amp_11q22.1	0.307	1
22q-Del	Del_5q35.2	0.307	1
Amp_11q22.1	Del_19q13.33	0.307	1
MTOR	Amp_5p15.33	0.309	1
TRIM9	Amp_5p15.33	0.309	1
Amp_5p15.33	Amp_21q22.13	0.309	1
ANKRD12	Del_8p23.1	0.315	1
MUC4	1q-Amp	0.315	1
ZNF578	Del_13q14.2	0.315	1
IDS	Del_13q14.2	0.315	1
LIN9	Del_13q14.2	0.315	1
NHS	5q-Del	0.315	1
NHS	6q-Del	0.315	1
NHS	Amp_1p31.3	0.315	1
SMAD4	Del_13q14.2	0.315	1
8q-Amp	Amp_19q13.13	0.315	1
8q-Amp	Del_10q23.31	0.315	1
6q-Del	Amp_19q13.13	0.315	1
Amp_1p31.3	Amp_17q12	0.315	1
Amp_1p31.3	Del_1p36.23	0.315	1
Amp_9p24.1	Del_1p36.23	0.315	1
Amp_17q25.1	Del_1p36.23	0.315	1
Del_2q37.1	Del_14q32.31	0.315	1
Amp_1q21.3	Del_13q14.2	0.316	1
EP300	Del_3p14.2	0.317	1
NFE2L2	Amp_5p15.33	0.317	1
Amp_2p24.3	Del_3p14.2	0.317	1
Amp_5p15.33	Del_18q21.2	0.317	1
Del_3p14.2	Del_18q21.2	0.317	1
MTOR	Amp_19q13.13	0.318	1
TRIM9	Amp_19q13.13	0.318	1
TRIM9	Del_10q23.31	0.318	1
3q-Amp	Del_5q12.1	0.319	1
3q-Amp	3q-Del	0.32	1
17p-Del	Amp_15q26.1	0.32	1
17p-Del	Del_14q32.31	0.32	1
EP300	Del_16q11.2	0.322	1
ERBB2	Amp_2p24.3	0.322	1
ZNF750	Amp_2p24.3	0.322	1
ZNF750	Del_18q21.2	0.322	1
1q-Amp	Del_4q21.3	0.323	1
1q-Amp	Del_16q11.2	0.323	1
ANKRD12	Del_11q25	0.324	1
TP53	Del_7q34	0.324	1
IDS	Del_11q25	0.324	1
1p-Amp	Del_11q23.3	0.325	1
Del_6p24.2	Del_7q34	0.325	1
ERBB3	Amp_13q22.1	0.326	1
FBXW7	Amp_2q33.1	0.326	1
FBXW7	Amp_11q13.3	0.326	1
KRAS	10q-Del	0.326	1
KRAS	Amp_13q22.1	0.326	1
MED1	10q-Del	0.326	1
MED1	18q-Del	0.326	1
MED1	Amp_16p13.13	0.326	1
ZNF750	Amp_20q11.21	0.326	1
1p-Amp	Del_17p12	0.326	1
10q-Del	Amp_2q33.1	0.326	1
13q-Del	Amp_2q33.1	0.326	1
3p-Del	Amp_8q24.21	0.326	1
ANKRD12	4p-Del	0.327	1
FBXW7	Amp_11q22.1	0.33	1
RB1	Del_2q37.1	0.33	1
10q-Del	Amp_11q22.1	0.33	1
13q-Del	Amp_11q22.1	0.33	1
Amp_16p13.13	Del_5q35.2	0.33	1
Del_2q37.1	Del_19q13.33	0.33	1
ARID1A	Amp_7p11.2	0.331	1
Amp_7p11.2	Amp_15q26.1	0.331	1
Amp_1q21.3	Amp_7p11.2	0.333	1
EP300	3p-Del	0.334	1
MTOR	20p-Amp	0.334	1
TRIM9	Del_5q12.1	0.334	1
11p-Del	Amp_11q22.1	0.334	1
3p-Del	Del_18q21.2	0.334	1
Amp_19q13.13	Del_13q14.2	0.335	1
Amp_13q34	Amp_20q11.21	0.336	1
EP300	Amp_20q11.21	0.338	1
11p-Del	Del_Xp11.3	0.338	1
ARID1A	Del_11p15.1	0.339	1
NFE2L2	Del_20p12.1	0.339	1
NHS	1p-Amp	0.339	1
1p-Amp	Del_1p36.23	0.339	1
20p-Amp	5q-Del	0.339	1
Amp_9p24.1	Del_5q12.1	0.339	1
Amp_15q26.1	Del_11p15.1	0.339	1
Amp_17q12	Del_20p12.1	0.339	1
Del_11p15.1	Del_14q32.31	0.339	1
ANKRD12	Del_4q35.2	0.34	1
ANKRD12	Del_6q26	0.34	1
ZNF578	Del_4q35.2	0.34	1
ZNF578	Del_13q12.11	0.34	1
LIN9	3p-Del	0.34	1
LIN9	Del_6q26	0.34	1
LIN9	Del_13q12.11	0.34	1
SMAD4	3p-Del	0.34	1
ZNF750	3q-Amp	0.34	1
Amp_1q44	Del_4q21.3	0.34	1
ERBB2	4q-Del	0.341	1
ZNF750	4q-Del	0.341	1
ZNF750	Del_4q22.1	0.341	1
CASP8	Del_16q11.2	0.342	1
MAPK1	Del_16q11.2	0.342	1
RB1	Del_4q21.3	0.342	1
5p-Amp	5q-Del	0.342	1
5p-Amp	6q-Del	0.342	1
11p-Del	Amp_6p21.33	0.342	1
Del_16q23.1	Del_19q13.33	0.342	1
PTPRC	Amp_1q21.3	0.344	1
IDS	Del_11q23.3	0.344	1
22q-Del	Amp_1q21.3	0.344	1
Amp_11p12	Del_11q23.3	0.344	1
FBXW7	Del_2q37.1	0.347	1
20q-Amp	Del_3p14.2	0.347	1
10q-Del	Del_2q37.1	0.347	1
Amp_16p13.13	Del_2q37.1	0.347	1
ERBB3	8q-Amp	0.348	1
ERBB3	Amp_1p31.3	0.348	1
HLA-B	8q-Amp	0.348	1
HLA-B	6q-Del	0.348	1
KRAS	5q-Del	0.348	1
KRAS	Amp_1p31.3	0.348	1
KRAS	Amp_9p24.1	0.348	1
KRAS	Amp_17q25.1	0.348	1
KRAS	Del_17q25.3	0.348	1
STK11	5p-Amp	0.348	1
STK11	Del_8p23.3	0.348	1
BAP1	Amp_1q21.3	0.348	1
FAT2	5q-Del	0.348	1
FAT2	Amp_1p31.3	0.348	1
MED1	6q-Del	0.348	1
TCTE1	11q-Del	0.348	1
8q-Amp	Amp_11q13.3	0.348	1
5q-Del	Amp_2q33.1	0.348	1
Amp_2q33.1	Amp_17q25.1	0.348	1
Amp_9p24.1	Amp_11q13.3	0.348	1
8p-Del	Amp_1q21.3	0.349	1
Amp_1q21.3	Amp_11q22.1	0.349	1
ERBB3	5p-Amp	0.35	1
HLA-B	11q-Del	0.35	1
KRAS	Del_8p23.3	0.35	1
FAT2	11q-Del	0.35	1
1p-Amp	Del_10q23.31	0.35	1
5p-Amp	Amp_2q33.1	0.35	1
Del_10q23.31	Del_20p12.1	0.35	1
EP300	Amp_2p24.3	0.351	1
MTOR	Amp_11q22.1	0.351	1
TRIM9	Amp_11q22.1	0.351	1
TRIM9	Del_5q35.2	0.351	1
Del_1p36.23	Del_13q14.2	0.352	1
NFE2L2	Del_11q25	0.353	1
IDS	1q-Amp	0.353	1
SMAD4	17p-Del	0.353	1
EP300	3q-Amp	0.354	1
HLA-A	Amp_8q24.21	0.354	1
Amp_8q24.21	Del_22q13.32	0.354	1
MUC4	Amp_11q22.1	0.356	1
ZNF750	Del_17p12	0.357	1
Amp_13q34	Del_11q25	0.358	1
MUC4	STK11	0.359	1
PIK3CA	Del_2q22.1	0.359	1
CASP8	Amp_2p24.3	0.361	1
CASP8	Del_18q21.2	0.361	1
EP300	PTPRC	0.361	1
EP300	22q-Del	0.361	1
MAPK1	Del_18q21.2	0.361	1
RB1	Amp_2p24.3	0.361	1
RB1	Del_18q21.2	0.361	1
Amp_2p24.3	Del_19q13.33	0.361	1
Del_11q23.3	Del_13q12.11	0.361	1
ERBB2	13q-Del	0.362	1
ZNF750	18q-Del	0.362	1
ZNF750	Amp_13q22.1	0.362	1
5p-Amp	Del_11q25	0.362	1
Amp_5p15.33	Amp_11q22.1	0.362	1
HLA-A	Amp_17q12	0.363	1
HLA-A	Del_1p36.23	0.363	1
NFE2L2	PTEN	0.363	1
NFE2L2	Amp_Xq28	0.363	1
PTEN	Amp_17q12	0.363	1
NHS	Amp_13q34	0.363	1
NHS	Amp_Xq28	0.363	1
Amp_13q34	Del_1p36.23	0.363	1
Amp_17q12	Del_22q13.32	0.363	1
Amp_9p24.1	Del_5q35.2	0.364	1
PIK3CA	17p-Del	0.365	1
20q-Amp	Del_2q37.1	0.365	1
Amp_16p13.13	Del_8p23.1	0.365	1
Amp_16p13.13	Del_13q14.2	0.365	1
3q-Amp	Del_13q14.2	0.366	1
MUC4	Amp_11q13.3	0.367	1
SMAD4	Del_11p15.1	0.367	1
19p-Del	Del_10q23.31	0.368	1
Del_10q23.31	Del_Xp11.3	0.368	1
Del_7q34	Del_8p23.3	0.37	1
ERBB3	1p-Amp	0.372	1
ERBB3	Del_15q21.1	0.372	1
KRAS	1p-Amp	0.372	1
FAT2	1p-Amp	0.372	1
MED1	Del_20p12.1	0.372	1
1p-Amp	Amp_11q13.3	0.372	1
3q-Amp	Del_5q35.2	0.372	1
Amp_1q21.3	Del_8p23.3	0.372	1
Amp_2q33.1	Del_15q21.1	0.372	1
Del_4q35.2	Del_6p24.2	0.372	1
1p-Amp	Del_5q12.1	0.374	1
1q-Amp	Del_13q14.2	0.374	1
Amp_1q44	Del_22q13.32	0.374	1
Amp_6p21.33	Del_17p12	0.374	1
PIK3CA	3q-Del	0.375	1
PIK3CA	Del_1p13.2	0.375	1
PIK3CA	Del_Xp11.3	0.375	1
PTEN	Amp_5p15.33	0.376	1
Amp_5p15.33	Del_22q13.32	0.376	1
Amp_Xq28	Del_3p14.2	0.376	1
BAP1	Amp_20q11.21	0.377	1
USP28	Amp_20q11.21	0.377	1
CASP8	4q-Del	0.381	1
EP300	Del_6p24.2	0.381	1
MAPK1	4q-Del	0.381	1
MAPK1	Del_4q22.1	0.381	1
PTPRC	4q-Del	0.381	1
PTPRC	Del_6p24.2	0.381	1
RB1	4q-Del	0.381	1
RB1	Del_4q22.1	0.381	1
Del_6p24.2	Del_19q13.33	0.381	1
ARID1A	11p-Del	0.382	1
11p-Del	Amp_15q26.1	0.382	1
ERBB3	Amp_5p15.33	0.383	1
KRAS	Amp_5p15.33	0.383	1
NFE2L2	Del_11q23.3	0.383	1
STK11	Del_8p23.1	0.383	1
FAT2	Amp_5p15.33	0.383	1
TCTE1	Del_13q14.2	0.383	1
Amp_1q44	Del_18q21.2	0.383	1
Amp_3q26.31	Del_5q35.2	0.383	1
Amp_5p15.33	Amp_11q13.3	0.383	1
ERBB2	8q-Amp	0.384	1
ERBB2	5q-Del	0.384	1
ERBB2	Amp_9p24.1	0.384	1
FBXW7	Del_16q23.1	0.384	1
ZNF750	8q-Amp	0.384	1
ZNF750	5q-Del	0.384	1
ZNF750	6q-Del	0.384	1
Amp_16p13.13	Del_16q11.2	0.384	1
MTOR	Del_4q21.3	0.387	1
MTOR	Del_16q11.2	0.387	1
MTOR	Del_16q23.1	0.387	1
ZNF578	3q-Amp	0.387	1
BAP1	Amp_8q24.21	0.387	1
RAB35	Amp_8q24.21	0.387	1
3q-Amp	Amp_11p12	0.387	1
Amp_6p21.33	Del_10q23.31	0.387	1
Amp_19q13.13	Del_2q22.1	0.387	1
Amp_20q11.21	Del_14q32.31	0.387	1
Amp_21q22.13	Del_16q23.1	0.387	1
Del_10q23.31	Del_22q13.32	0.387	1
CASP8	Amp_20q11.21	0.388	1
22q-Del	Amp_20q11.21	0.388	1
Amp_1q44	Del_10q23.31	0.388	1
NFE2L2	Del_4q35.2	0.389	1
NHS	Del_6q26	0.389	1
NHS	Del_13q12.11	0.389	1
3p-Del	Amp_17q12	0.389	1
3p-Del	Del_1p36.23	0.389	1
Amp_3q26.31	Del_16q23.1	0.389	1
HLA-A	Amp_3q28	0.39	1
NFE2L2	Del_14q32.31	0.39	1
6q-Del	Del_7q34	0.39	1
Amp_3q28	Amp_Xq28	0.39	1
Amp_15q26.1	Amp_17q12	0.39	1
Amp_15q26.1	Del_1p36.23	0.39	1
Amp_17q25.1	Del_7q34	0.39	1
Del_7q34	Del_17q25.3	0.39	1
1q-Amp	Del_3p14.2	0.391	1
17p-Del	Amp_1q44	0.391	1
3p-Del	Amp_19q13.13	0.391	1
Amp_11q22.1	Del_10q23.31	0.391	1
Amp_13q34	Del_11q23.3	0.392	1
MUC4	Amp_1q44	0.393	1
Amp_1q21.3	Del_6q26	0.393	1
SMAD4	11p-Del	0.395	1
3q-Amp	Del_15q21.1	0.395	1
ERBB3	Amp_6p21.33	0.396	1
ERBB3	Amp_13q34	0.396	1
ERBB3	Amp_Xq28	0.396	1
ERBB3	Del_22q13.32	0.396	1
HLA-A	KRAS	0.396	1
HLA-A	Amp_11q13.3	0.396	1
HLA-B	Amp_6p21.33	0.396	1
KRAS	Amp_6p21.33	0.396	1
KRAS	Amp_13q34	0.396	1
KRAS	Amp_Xq28	0.396	1
KRAS	Del_2q22.1	0.396	1
KRAS	Del_22q13.32	0.396	1
PTEN	MED1	0.396	1
PTEN	Amp_2q33.1	0.396	1
PTEN	Amp_11q13.3	0.396	1
FAT2	Amp_6p21.33	0.396	1
FAT2	Amp_Xq28	0.396	1
MED1	Del_22q13.32	0.396	1
TCTE1	4p-Del	0.396	1
Amp_2q33.1	Amp_6p21.33	0.396	1
PIK3CA	Del_13q14.2	0.397	1
1q-Amp	4q-Del	0.397	1
1q-Amp	Del_4q22.1	0.397	1
C3orf70	Del_17p12	0.398	1
BAP1	Amp_1q44	0.398	1
1p-Amp	8p-Del	0.399	1
1p-Amp	Amp_11q22.1	0.399	1
Amp_11q22.1	Del_15q21.1	0.399	1
SEMA4B	Del_5q35.2	0.401	1
CASP8	FBXW7	0.402	1
CASP8	18q-Del	0.402	1
FBXW7	PTPRC	0.402	1
FBXW7	Del_19q13.33	0.402	1
MAPK1	18q-Del	0.402	1
MAPK1	Amp_13q22.1	0.402	1
PTPRC	10q-Del	0.402	1
PTPRC	Amp_13q22.1	0.402	1
PTPRC	Amp_16p13.13	0.402	1
RB1	18q-Del	0.402	1
TP53	10q-Del	0.402	1
TP53	13q-Del	0.402	1
11p-Del	Del_16q23.1	0.402	1
13q-Del	22q-Del	0.402	1
13q-Del	Del_19q13.33	0.402	1
22q-Del	Amp_13q22.1	0.402	1
Amp_13q22.1	Del_19q13.33	0.402	1
ERBB3	Del_8p23.1	0.403	1
HLA-B	Del_13q14.2	0.403	1
KRAS	Del_8p23.1	0.403	1
RB1	Amp_8q24.21	0.403	1
22q-Del	Amp_8q24.21	0.403	1
20q-Amp	3p-Del	0.404	1
Amp_8q24.21	Del_5q12.1	0.404	1
Amp_20q11.21	Del_13q14.2	0.404	1
PIK3CA	18q-Del	0.405	1
ERBB2	11q-Del	0.406	1
ERBB3	Amp_3q28	0.406	1
MTOR	Amp_2p24.3	0.406	1
MTOR	Del_18q21.2	0.406	1
MED1	Amp_3q28	0.406	1
1q-Amp	Del_2q37.1	0.406	1
Amp_2q33.1	Amp_3q28	0.406	1
HLA-A	Amp_3q26.31	0.407	1
Amp_3q26.31	Del_22q13.32	0.407	1
STK11	20q-Amp	0.408	1
STK11	Del_6q26	0.408	1
TCTE1	Del_6q26	0.408	1
TCTE1	Del_13q12.11	0.408	1
ZNF750	Del_15q21.1	0.408	1
ZNF750	Del_20p12.1	0.408	1
20p-Amp	Del_11q23.3	0.408	1
6q-Del	Del_13q14.2	0.408	1
Amp_9p24.1	Del_8p23.1	0.408	1
Amp_17q25.1	Del_8p23.1	0.408	1
1q-Amp	Amp_17q12	0.409	1
17p-Del	Amp_17q12	0.409	1
Amp_11q22.1	Del_8p23.1	0.409	1
HLA-A	Del_5q12.1	0.412	1
PIK3CA	Amp_8q24.21	0.412	1
PIK3CA	Del_11p15.1	0.412	1
PTEN	Del_5q12.1	0.412	1
20p-Amp	Del_2q22.1	0.412	1
10q-Del	Amp_2p24.3	0.412	1
13q-Del	Del_18q21.2	0.412	1
Amp_13q34	Del_5q12.1	0.412	1
FBXW7	Del_13q12.11	0.413	1
MTOR	Amp_1q21.3	0.413	1
TRIM9	Amp_1q21.3	0.413	1
20q-Amp	10q-Del	0.413	1
20q-Amp	Amp_13q22.1	0.413	1
18q-Del	3p-Del	0.413	1
Amp_16p13.13	Del_4q35.2	0.413	1
1q-Amp	Del_11q23.3	0.414	1
3q-Amp	4q-Del	0.414	1
3q-Amp	Del_4q22.1	0.414	1
5q-Del	Del_16q11.2	0.417	1
Amp_17q25.1	Del_4q21.3	0.417	1
Del_4q21.3	Del_17q25.3	0.417	1
Del_16q23.1	Del_17q25.3	0.417	1
5p-Amp	Del_11q23.3	0.418	1
19p-Del	Del_7q34	0.418	1
6q-Del	Amp_1q21.3	0.418	1
Amp_1q21.3	Del_17q25.3	0.418	1
Del_1p13.2	Del_7q34	0.418	1
MAPK1	Del_17p12	0.419	1
PTPRC	Amp_1q44	0.419	1
PTPRC	Del_17p12	0.419	1
TP53	Del_17p12	0.419	1
22q-Del	Amp_1q44	0.419	1
Amp_1q44	Del_19q13.33	0.419	1
ERBB3	Amp_3q26.31	0.42	1
MED1	Amp_3q26.31	0.42	1
1q-Amp	Del_10q23.31	0.42	1
17p-Del	Amp_19q13.13	0.42	1
HLA-B	4p-Del	0.421	1
KRAS	4p-Del	0.421	1
PIK3CA	Amp_7p11.2	0.421	1
PIK3CA	Del_14q32.31	0.421	1
3q-Amp	22q-Del	0.422	1
ERBB3	Amp_7p11.2	0.423	1
HLA-B	Amp_7p11.2	0.423	1
HLA-B	Del_14q32.31	0.423	1
KRAS	Amp_7p11.2	0.423	1
KRAS	Amp_15q26.1	0.423	1
MED1	Amp_15q26.1	0.423	1
CASP8	8q-Amp	0.424	1
CASP8	5q-Del	0.424	1
CASP8	6q-Del	0.424	1
CASP8	Amp_17q25.1	0.424	1
CASP8	Del_17q25.3	0.424	1
MAPK1	8q-Amp	0.424	1
MAPK1	5q-Del	0.424	1
MAPK1	6q-Del	0.424	1
MAPK1	Amp_9p24.1	0.424	1
PTPRC	5q-Del	0.424	1
PTPRC	6q-Del	0.424	1
PTPRC	Amp_17q25.1	0.424	1
PTPRC	Del_17q25.3	0.424	1
RB1	8q-Amp	0.424	1
RB1	5q-Del	0.424	1
RB1	6q-Del	0.424	1
TP53	5q-Del	0.424	1
8q-Amp	22q-Del	0.424	1
22q-Del	5q-Del	0.424	1
22q-Del	6q-Del	0.424	1
22q-Del	Amp_1p31.3	0.424	1
22q-Del	Amp_17q25.1	0.424	1
22q-Del	Del_17q25.3	0.424	1
6q-Del	Del_19q13.33	0.424	1
Amp_9p24.1	Del_19q13.33	0.424	1
MTOR	4q-Del	0.425	1
MTOR	Del_4q22.1	0.425	1
MTOR	Del_6p24.2	0.425	1
TRIM9	4q-Del	0.425	1
TRIM9	Del_6p24.2	0.425	1
1p-Amp	Del_7q34	0.425	1
Amp_3q28	Del_1p13.2	0.425	1
Amp_21q22.13	Del_6p24.2	0.425	1
ZNF578	Del_10q23.31	0.426	1
IDS	Del_10q23.31	0.426	1
LIN9	Del_10q23.31	0.426	1
SMAD4	Del_10q23.31	0.426	1
10q-Del	Amp_5p15.33	0.426	1
18q-Del	Amp_5p15.33	0.426	1
18q-Del	Del_3p14.2	0.426	1
Amp_1q44	Amp_7p11.2	0.426	1
Amp_5p15.33	Amp_16p13.13	0.426	1
Amp_7p11.2	Del_17p12	0.426	1
Amp_11p12	Amp_19q13.13	0.426	1
Amp_11p12	Del_10q23.31	0.426	1
Del_14q32.31	Del_17p12	0.426	1
PIK3CA	11q-Del	0.427	1
20p-Amp	Del_13q12.11	0.427	1
Xp-Del	Del_11q25	0.427	1
22q-Del	Amp_3q26.31	0.428	1
Amp_1q44	Del_17p12	0.428	1
Amp_15q26.1	Amp_19q13.13	0.428	1
NFE2L2	Del_11p15.1	0.429	1
Amp_1q44	Del_4q22.1	0.429	1
Amp_1p31.3	Del_11q25	0.43	1
Amp_1q44	Del_5q12.1	0.43	1
C3orf70	Del_8p23.3	0.431	1
BAP1	5p-Amp	0.431	1
BAP1	11q-Del	0.431	1
BAP1	Del_8p23.3	0.431	1
C12orf43	5p-Amp	0.431	1
C12orf43	11q-Del	0.431	1
NHS	Del_2q37.1	0.431	1
USP28	11q-Del	0.431	1
8q-Amp	4p-Del	0.431	1
ERBB2	Amp_6p21.33	0.432	1
ERBB2	Amp_Xq28	0.432	1
ERBB2	Del_2q22.1	0.432	1
ZNF750	Amp_6p21.33	0.432	1
ZNF750	Amp_13q34	0.432	1
ZNF750	Amp_Xq28	0.432	1
ZNF750	Del_2q22.1	0.432	1
ZNF750	Del_22q13.32	0.432	1
Amp_1q21.3	Del_3p14.2	0.433	1
TCTE1	Del_11p15.1	0.435	1
TCTE1	Del_11q25	0.435	1
17p-Del	Amp_1q21.3	0.435	1
HLA-A	11q-Del	0.436	1
SEMA4B	Del_16q23.1	0.436	1
TRIM9	Del_11q25	0.436	1
11q-Del	Del_22q13.32	0.436	1
19p-Del	Del_16q11.2	0.436	1
19p-Del	Del_16q23.1	0.436	1
Amp_Xq28	Del_8p23.3	0.436	1
Del_2q22.1	Del_8p23.3	0.436	1
HLA-A	8p-Del	0.437	1
HLA-A	Amp_11q22.1	0.437	1
HLA-A	Del_5q35.2	0.437	1
MUC4	Del_16q11.2	0.437	1
MUC4	Del_16q23.1	0.437	1
PTEN	8p-Del	0.437	1
PTEN	Del_5q35.2	0.437	1
4p-Del	Amp_11q22.1	0.437	1
8p-Del	Amp_6p21.33	0.437	1
8p-Del	Amp_Xq28	0.437	1
Amp_13q34	Del_5q35.2	0.437	1
Amp_Xq28	Del_5q35.2	0.437	1
1q-Amp	13q-Del	0.438	1
1q-Amp	3p-Del	0.438	1
1q-Amp	Del_13q12.11	0.438	1
17p-Del	Amp_16p13.13	0.438	1
ERBB3	3p-Del	0.44	1
ERBB3	Del_4q35.2	0.44	1
HLA-B	3p-Del	0.44	1
FAT2	Del_6q26	0.44	1
MED1	Del_4q35.2	0.44	1
MED1	Del_6q26	0.44	1
3p-Del	Amp_11q13.3	0.44	1
Amp_5p15.33	Amp_7p11.2	0.44	1
Amp_5p15.33	Del_11q25	0.44	1
Amp_11q13.3	Del_6q26	0.44	1
17p-Del	Amp_3q26.31	0.441	1
Xp-Del	Del_11q23.3	0.441	1
MUC4	BAP1	0.442	1
ZNF578	20p-Amp	0.442	1
IDS	Del_5q12.1	0.442	1
LIN9	Del_5q12.1	0.442	1
Amp_1q21.3	Del_4q21.3	0.442	1
3q-Amp	Del_10q23.31	0.444	1
3q-Del	Del_2q37.1	0.444	1
Amp_3q28	Del_5q12.1	0.444	1
Amp_8q24.21	Del_3p14.2	0.445	1
MTOR	13q-Del	0.446	1
MTOR	18q-Del	0.446	1
MTOR	Amp_13q22.1	0.446	1
TRIM9	10q-Del	0.446	1
3q-Amp	Del_1p36.23	0.446	1
8q-Amp	Amp_2p24.3	0.446	1
11q-Del	Del_6q26	0.446	1
3p-Del	Del_8p23.3	0.446	1
Amp_2p24.3	Del_17q25.3	0.446	1
CASP8	Del_20p12.1	0.447	1
MAPK1	Del_15q21.1	0.447	1
MAPK1	Del_20p12.1	0.447	1
RB1	Del_15q21.1	0.447	1
RB1	Del_20p12.1	0.447	1
1p-Amp	22q-Del	0.447	1
NFE2L2	Del_1p36.23	0.448	1
NHS	Del_1p36.23	0.448	1
1p-Amp	Del_2q37.1	0.453	1
1p-Amp	Del_16q23.1	0.453	1
Del_2q37.1	Del_15q21.1	0.453	1
FBXW7	Amp_8q24.21	0.454	1
10q-Del	Amp_8q24.21	0.454	1
EP300	19p-Del	0.455	1
EP300	Del_1p13.2	0.455	1
SEMA4B	Del_18q21.2	0.455	1
11p-Del	Amp_20q11.21	0.455	1
Amp_2p24.3	Del_1p13.2	0.455	1
EP300	Del_8p23.3	0.456	1
TCTE1	Del_11q23.3	0.456	1
20q-Amp	5q-Del	0.456	1
20q-Amp	Amp_9p24.1	0.456	1
11q-Del	Amp_2p24.3	0.456	1
Amp_2p24.3	Del_8p23.3	0.456	1
Del_6q26	Del_17q25.3	0.456	1
Del_13q12.11	Del_17q25.3	0.456	1
MTOR	Amp_20q11.21	0.457	1
MUC4	Amp_13q34	0.457	1
TRIM9	Amp_20q11.21	0.457	1
1q-Amp	Del_5q12.1	0.457	1
3q-Del	Amp_3q26.31	0.457	1
ANKRD12	8p-Del	0.458	1
ANKRD12	Del_5q35.2	0.458	1
ERBB2	Amp_7p11.2	0.458	1
ERBB2	Amp_15q26.1	0.458	1
ERBB2	Del_13q14.2	0.458	1
ZNF578	Amp_11q22.1	0.458	1
IDS	Amp_11q22.1	0.458	1
IDS	Del_5q35.2	0.458	1
LIN9	Del_5q35.2	0.458	1
ZNF750	Amp_7p11.2	0.458	1
ZNF750	Del_13q14.2	0.458	1
8p-Del	Amp_11p12	0.458	1
Amp_5p15.33	Del_8p23.3	0.458	1
ERBB3	17p-Del	0.46	1
KRAS	1q-Amp	0.46	1
MED1	17p-Del	0.46	1
17p-Del	Amp_11q13.3	0.46	1
Amp_19q13.13	Del_16q23.1	0.46	1
TRIM9	Del_11q23.3	0.462	1
FBXW7	Del_11p15.1	0.463	1
HLA-A	Del_7q34	0.463	1
PTEN	Del_7q34	0.463	1
TCTE1	11p-Del	0.463	1
Del_7q34	Del_22q13.32	0.463	1
HLA-A	3q-Amp	0.464	1
3q-Amp	Amp_6p21.33	0.464	1
C3orf70	Del_8p23.1	0.465	1
C3orf70	Del_13q14.2	0.465	1
PIK3CA	Amp_1p31.3	0.465	1
BAP1	Del_8p23.1	0.465	1
BAP1	Del_13q14.2	0.465	1
RAB35	Del_13q14.2	0.465	1
8p-Del	Del_4q35.2	0.465	1
8p-Del	Del_13q12.11	0.465	1
Amp_11q22.1	Del_13q12.11	0.465	1
CASP8	Del_8p23.3	0.467	1
MAPK1	11q-Del	0.467	1
MTOR	5q-Del	0.467	1
MTOR	Amp_1p31.3	0.467	1
PTPRC	11q-Del	0.467	1
RB1	11q-Del	0.467	1
TRIM9	8q-Amp	0.467	1
TRIM9	5q-Del	0.467	1
TRIM9	6q-Del	0.467	1
TRIM9	Amp_17q25.1	0.467	1
22q-Del	Del_8p23.3	0.467	1
PIK3CA	Amp_11p12	0.468	1
Amp_1p31.3	Del_11q23.3	0.468	1
Amp_5p15.33	Del_16q11.2	0.468	1
3q-Amp	Xp-Del	0.469	1
CASP8	Del_2q22.1	0.471	1
CASP8	Del_22q13.32	0.471	1
HLA-A	MAPK1	0.471	1
HLA-A	Del_19q13.33	0.471	1
MAPK1	Amp_6p21.33	0.471	1
MAPK1	Amp_13q34	0.471	1
MAPK1	Amp_Xq28	0.471	1
MAPK1	Del_2q22.1	0.471	1
PTEN	22q-Del	0.471	1
PTPRC	Amp_13q34	0.471	1
PTPRC	Amp_Xq28	0.471	1
RB1	Amp_6p21.33	0.471	1
TP53	Amp_6p21.33	0.471	1
TP53	Amp_Xq28	0.471	1
TP53	Del_2q22.1	0.471	1
22q-Del	Amp_6p21.33	0.471	1
22q-Del	Amp_Xq28	0.471	1
22q-Del	Del_2q22.1	0.471	1
Del_8p23.3	Del_10q23.31	0.471	1
Amp_1q21.3	Del_15q21.1	0.473	1
FBXW7	13q-Del	0.474	1
FBXW7	18q-Del	0.474	1
13q-Del	18q-Del	0.474	1
13q-Del	Amp_16p13.13	0.474	1
18q-Del	Amp_16p13.13	0.474	1
4q-Del	Del_1p13.2	0.474	1
8p-Del	Amp_1q44	0.474	1
Del_1p13.2	Del_6p24.2	0.474	1
ANKRD12	Del_7q34	0.475	1
IDS	Del_7q34	0.475	1
Amp_3q26.31	Del_7q34	0.475	1
8q-Amp	Del_6p24.2	0.476	1
4q-Del	Del_17q25.3	0.476	1
ERBB2	4p-Del	0.477	1
C12orf43	4p-Del	0.477	1
RAB35	4p-Del	0.477	1
USP28	4p-Del	0.477	1
ZNF750	4p-Del	0.477	1
4p-Del	Del_15q21.1	0.477	1
4p-Del	Del_20p12.1	0.477	1
Amp_11q22.1	Amp_15q26.1	0.477	1
Amp_11q22.1	Del_14q32.31	0.477	1
Amp_15q26.1	Del_5q35.2	0.477	1
Del_5q35.2	Del_14q32.31	0.477	1
MUC4	3p-Del	0.478	1
MUC4	Del_4q35.2	0.478	1
MUC4	Del_13q12.11	0.478	1
3q-Amp	10q-Del	0.478	1
HLA-B	Amp_17q12	0.48	1
HLA-B	Del_1p36.23	0.48	1
KRAS	NFE2L2	0.48	1
KRAS	Amp_17q12	0.48	1
FAT2	Amp_17q12	0.48	1
FAT2	Del_1p36.23	0.48	1
FAT2	Del_11p15.1	0.48	1
MED1	Del_1p36.23	0.48	1
SMAD4	Amp_5p15.33	0.48	1
1q-Amp	8q-Amp	0.48	1
1q-Amp	6q-Del	0.48	1
1q-Amp	Del_17q25.3	0.48	1
17p-Del	Amp_9p24.1	0.48	1
Amp_2q33.1	Amp_17q12	0.48	1
Amp_11q13.3	Amp_17q12	0.48	1
EP300	Del_20p12.1	0.481	1
MUC4	Amp_2p24.3	0.481	1
MUC4	Del_18q21.2	0.481	1
Amp_2p24.3	Del_20p12.1	0.481	1
Amp_3q26.31	Del_17p12	0.482	1
5q-Del	Amp_20q11.21	0.483	1
Amp_20q11.21	Del_6q26	0.483	1
Amp_20q11.21	Del_17q25.3	0.483	1
1q-Amp	11q-Del	0.484	1
1q-Amp	Del_8p23.3	0.484	1
8q-Amp	Del_3p14.2	0.486	1
6q-Del	Amp_5p15.33	0.486	1
Amp_5p15.33	Amp_9p24.1	0.486	1
Amp_11q22.1	Del_7q34	0.487	1
Del_8p23.3	Del_14q32.31	0.487	1
MTOR	Amp_1q44	0.488	1
TRIM9	Del_17p12	0.488	1
C3orf70	3p-Del	0.489	1
C3orf70	Del_4q35.2	0.489	1
C3orf70	Del_6q26	0.489	1
C3orf70	Del_13q12.11	0.489	1
BAP1	20q-Amp	0.489	1
RAB35	20q-Amp	0.489	1
RAB35	Del_4q35.2	0.489	1
RAB35	Del_6q26	0.489	1
RAB35	Del_13q12.11	0.489	1
USP28	20q-Amp	0.489	1
HLA-A	Del_4q21.3	0.49	1
HLA-A	Del_16q11.2	0.49	1
MTOR	1p-Amp	0.49	1
MTOR	Del_15q21.1	0.49	1
MTOR	Del_20p12.1	0.49	1
PTEN	Del_16q23.1	0.49	1
TRIM9	Del_20p12.1	0.49	1
Amp_3q28	Del_13q12.11	0.49	1
Amp_13q34	Del_16q11.2	0.49	1
Amp_13q34	Del_16q23.1	0.49	1
Amp_Xq28	Del_16q11.2	0.49	1
Del_2q22.1	Del_4q21.3	0.49	1
3q-Amp	Del_4q21.3	0.491	1
ANKRD12	Del_4q21.3	0.492	1
STK11	Amp_19q13.13	0.492	1
ZNF578	Del_4q21.3	0.492	1
ZNF578	Del_16q23.1	0.492	1
LIN9	Del_4q21.3	0.492	1
LIN9	Del_16q23.1	0.492	1
SEMA4B	Amp_1q21.3	0.492	1
SMAD4	Del_4q21.3	0.492	1
Amp_1q21.3	Del_8p23.1	0.492	1
Amp_11p12	Del_16q11.2	0.492	1
Amp_11p12	Del_16q23.1	0.492	1
Amp_1q21.3	Del_18q21.2	0.493	1
FBXW7	SEMA4B	0.494	1
FBXW7	Del_Xp11.3	0.494	1
SEMA4B	13q-Del	0.494	1
SEMA4B	18q-Del	0.494	1
10q-Del	19p-Del	0.494	1
10q-Del	Del_1p13.2	0.494	1
10q-Del	Del_Xp11.3	0.494	1
Amp_16p13.13	Del_1p13.2	0.494	1
Amp_16p13.13	Del_Xp11.3	0.494	1
ZNF750	Del_13q12.11	0.495	1
1q-Amp	8p-Del	0.495	1
ARID1A	MAPK1	0.496	1
ARID1A	Del_19q13.33	0.496	1
MAPK1	Amp_7p11.2	0.496	1
MAPK1	Del_14q32.31	0.496	1
PTPRC	Amp_7p11.2	0.496	1
RB1	Amp_7p11.2	0.496	1
TP53	Amp_7p11.2	0.496	1
22q-Del	Amp_7p11.2	0.496	1
Amp_15q26.1	Del_19q13.33	0.496	1
ERBB3	Del_2q37.1	0.498	1
HLA-B	Del_2q37.1	0.498	1
TCTE1	3q-Amp	0.498	1
1p-Amp	Del_6q26	0.501	1
Del_4q35.2	Del_20p12.1	0.501	1
Del_6p24.2	Del_8p23.3	0.501	1
C3orf70	1q-Amp	0.502	1
C3orf70	17p-Del	0.502	1
PIK3CA	Del_18q21.2	0.502	1
PTEN	Del_13q14.2	0.502	1
BAP1	1q-Amp	0.502	1
USP28	1q-Amp	0.502	1
Del_2q22.1	Del_8p23.1	0.502	1
Del_7q34	Del_14q32.31	0.502	1
Del_13q14.2	Del_22q13.32	0.502	1
Amp_3q28	Del_14q32.31	0.503	1
11q-Del	Amp_8q24.21	0.504	1
Amp_20q11.21	Del_1p36.23	0.504	1
20p-Amp	Del_3p14.2	0.505	1
4p-Del	Amp_1q44	0.506	1
5q-Del	Amp_8q24.21	0.506	1
6q-Del	Amp_8q24.21	0.506	1
Amp_1p31.3	Del_11p15.1	0.506	1
Amp_8q24.21	Amp_17q25.1	0.506	1
FBXW7	8q-Amp	0.507	1
FBXW7	Del_17q25.3	0.507	1
STK11	20p-Amp	0.507	1
STK11	Del_5q12.1	0.507	1
8q-Amp	Amp_16p13.13	0.507	1
13q-Del	6q-Del	0.507	1
6q-Del	Amp_16p13.13	0.507	1
Amp_13q22.1	Amp_17q25.1	0.507	1
ANKRD12	EP300	0.51	1
ANKRD12	Amp_2p24.3	0.51	1
ANKRD12	Del_18q21.2	0.51	1
EP300	SMAD4	0.51	1
EP300	Amp_11p12	0.51	1
ZNF578	Del_18q21.2	0.51	1
IDS	Amp_2p24.3	0.51	1
LIN9	Del_18q21.2	0.51	1
1p-Amp	Del_6p24.2	0.51	1
4q-Del	Del_15q21.1	0.51	1
Del_6p24.2	Del_15q21.1	0.51	1
ERBB3	KRAS	0.511	1
ERBB3	Amp_11q13.3	0.511	1
HLA-B	KRAS	0.511	1
HLA-B	Amp_11q13.3	0.511	1
KRAS	FAT2	0.511	1
KRAS	MED1	0.511	1
KRAS	Amp_2q33.1	0.511	1
KRAS	Amp_11q13.3	0.511	1
MED1	Amp_11q13.3	0.511	1
3q-Amp	11p-Del	0.511	1
Del_2q37.1	Del_22q13.32	0.511	1
HLA-A	Amp_21q22.13	0.513	1
MTOR	Amp_13q34	0.513	1
MTOR	Amp_Xq28	0.513	1
MTOR	Del_2q22.1	0.513	1
PTEN	TRIM9	0.513	1
TRIM9	Amp_Xq28	0.513	1
TRIM9	Del_2q22.1	0.513	1
20p-Amp	11q-Del	0.513	1
20p-Amp	Del_8p23.3	0.513	1
Amp_21q22.13	Del_22q13.32	0.513	1
ZNF750	Del_1p36.23	0.514	1
Amp_5p15.33	Del_11q23.3	0.514	1
KRAS	Amp_1q21.3	0.515	1
MTOR	3q-Amp	0.515	1
C12orf43	Del_11p15.1	0.515	1
FAT2	Amp_1q21.3	0.515	1
SEMA4B	6q-Del	0.515	1
SEMA4B	Amp_1p31.3	0.515	1
SEMA4B	Amp_17q25.1	0.515	1
ZNF750	17p-Del	0.515	1
3q-Amp	Amp_21q22.13	0.515	1
8q-Amp	Del_1p13.2	0.515	1
19p-Del	6q-Del	0.515	1
19p-Del	Amp_1p31.3	0.515	1
19p-Del	Amp_9p24.1	0.515	1
19p-Del	Amp_17q25.1	0.515	1
19p-Del	Del_17q25.3	0.515	1
6q-Del	Del_Xp11.3	0.515	1
Amp_1p31.3	Del_1p13.2	0.515	1
Amp_9p24.1	Del_1p13.2	0.515	1
Amp_17q25.1	Del_1p13.2	0.515	1
Amp_20q11.21	Del_16q23.1	0.515	1
Del_1p13.2	Del_17q25.3	0.515	1
FBXW7	11p-Del	0.516	1
NHS	Amp_19q13.13	0.516	1
NHS	Del_10q23.31	0.516	1
11p-Del	Amp_16p13.13	0.516	1
Amp_3q26.31	Del_13q12.11	0.516	1
EP300	HLA-A	0.518	1
EP300	Del_2q22.1	0.518	1
EP300	Del_22q13.32	0.518	1
Amp_2p24.3	Amp_Xq28	0.518	1
Amp_2p24.3	Del_22q13.32	0.518	1
Amp_6p21.33	Del_18q21.2	0.518	1
Amp_Xq28	Del_18q21.2	0.518	1
Del_2q22.1	Del_18q21.2	0.518	1
CASP8	Del_8p23.1	0.519	1
CASP8	Del_13q14.2	0.519	1
MAPK1	Del_13q14.2	0.519	1
22q-Del	Del_8p23.1	0.519	1
Amp_3q26.31	Del_14q32.31	0.519	1
Amp_3q28	Del_1p36.23	0.519	1
3p-Del	Amp_5p15.33	0.52	1
PIK3CA	Xp-Del	0.521	1
FAT2	11p-Del	0.521	1
Amp_11q22.1	Del_4q21.3	0.521	1
MAPK1	PIK3CA	0.522	1
NFE2L2	Amp_8q24.21	0.522	1
PIK3CA	22q-Del	0.522	1
PIK3CA	Del_19q13.33	0.522	1
STK11	8p-Del	0.523	1
STK11	Amp_11q22.1	0.523	1
STK11	Del_5q35.2	0.523	1
PTEN	4p-Del	0.525	1
4p-Del	Del_22q13.32	0.525	1
EP300	20p-Amp	0.526	1
MUC4	Del_6p24.2	0.526	1
ERBB3	3q-Amp	0.527	1
KRAS	3q-Amp	0.527	1
3q-Amp	Del_3p14.2	0.527	1
1q-Amp	Del_11q25	0.528	1
Amp_9p24.1	Del_17p12	0.528	1
Amp_17q25.1	Del_17p12	0.528	1
ANKRD12	4q-Del	0.529	1
ANKRD12	Del_4q22.1	0.529	1
ARID1A	Del_4q21.3	0.529	1
PIK3CA	Del_20p12.1	0.529	1
ZNF578	4q-Del	0.529	1
IDS	4q-Del	0.529	1
LIN9	4q-Del	0.529	1
SMAD4	Del_4q22.1	0.529	1
SMAD4	Del_6p24.2	0.529	1
Amp_5p15.33	Del_Xq21.33	0.529	1
Amp_7p11.2	Del_16q11.2	0.529	1
Amp_15q26.1	Del_16q11.2	0.529	1
Amp_1q21.3	Del_2q22.1	0.531	1
5p-Amp	3q-Del	0.532	1
EP300	Del_8p23.1	0.533	1
Amp_19q13.13	Del_6p24.2	0.533	1
Del_13q14.2	Del_18q21.2	0.533	1
Amp_3q26.31	Del_1p36.23	0.534	1
MTOR	5p-Amp	0.535	1
SEMA4B	Amp_20q11.21	0.535	1
TRIM9	5p-Amp	0.535	1
TRIM9	11q-Del	0.535	1
5p-Amp	Amp_21q22.13	0.535	1
4p-Del	Amp_1q21.3	0.535	1
Amp_20q11.21	Del_1p13.2	0.535	1
SEMA4B	1p-Amp	0.536	1
1p-Amp	19p-Del	0.536	1
1p-Amp	Del_1p13.2	0.536	1
19p-Del	Del_15q21.1	0.536	1
Del_1p13.2	Del_20p12.1	0.536	1
Del_15q21.1	Del_Xp11.3	0.536	1
CASP8	4p-Del	0.537	1
CASP8	Del_3p14.2	0.537	1
MAPK1	4p-Del	0.537	1
MTOR	Amp_7p11.2	0.537	1
MTOR	Del_14q32.31	0.537	1
PTPRC	Amp_5p15.33	0.537	1
PTPRC	Del_3p14.2	0.537	1
RB1	4p-Del	0.537	1
RB1	Amp_5p15.33	0.537	1
RB1	Del_3p14.2	0.537	1
TP53	4p-Del	0.537	1
TP53	Amp_5p15.33	0.537	1
TP53	Del_3p14.2	0.537	1
TRIM9	Amp_7p11.2	0.537	1
3q-Amp	Del_14q32.31	0.537	1
Amp_3q28	Del_5q35.2	0.537	1
Amp_7p11.2	Amp_21q22.13	0.537	1
Del_3p14.2	Del_19q13.33	0.537	1
ERBB2	Amp_3q28	0.538	1
TCTE1	Del_7q34	0.539	1
20p-Amp	Del_1p36.23	0.539	1
8q-Amp	Amp_17q25.1	0.539	1
8q-Amp	Del_17q25.3	0.539	1
5q-Del	Amp_9p24.1	0.539	1
6q-Del	Del_17q25.3	0.539	1
Amp_9p24.1	Del_17q25.3	0.539	1
FBXW7	Del_15q21.1	0.54	1
1p-Amp	10q-Del	0.54	1
10q-Del	Del_20p12.1	0.54	1
13q-Del	Del_20p12.1	0.54	1
Amp_13q22.1	Del_15q21.1	0.54	1
Amp_16p13.13	Del_15q21.1	0.54	1
Amp_16p13.13	Del_20p12.1	0.54	1
MUC4	20p-Amp	0.541	1
NFE2L2	Del_17p12	0.541	1
C12orf43	11p-Del	0.541	1
Del_1p13.2	Del_11q25	0.542	1
MUC4	3q-Del	0.543	1
ERBB2	KRAS	0.544	1
ERBB2	MED1	0.544	1
ERBB2	Amp_11q13.3	0.544	1
KRAS	ZNF750	0.544	1
ZNF750	Amp_11q13.3	0.544	1
20p-Amp	Del_11q25	0.545	1
20q-Amp	11p-Del	0.545	1
20q-Amp	Del_13q14.2	0.545	1
20q-Amp	Del_16q23.1	0.545	1
3p-Del	Del_8p23.1	0.545	1
4q-Del	Amp_1q21.3	0.545	1
Amp_1q21.3	Del_4q22.1	0.545	1
Del_4q35.2	Del_16q11.2	0.545	1
Del_4q35.2	Del_16q23.1	0.545	1
Del_13q12.11	Del_16q11.2	0.545	1
HLA-A	Del_4q22.1	0.546	1
PTEN	Del_6p24.2	0.546	1
3q-Amp	8q-Amp	0.546	1
3q-Amp	6q-Del	0.546	1
3p-Del	Amp_1q44	0.546	1
4q-Del	Amp_6p21.33	0.546	1
4q-Del	Amp_13q34	0.546	1
4q-Del	Del_2q22.1	0.546	1
4q-Del	Del_22q13.32	0.546	1
Del_2q22.1	Del_4q22.1	0.546	1
ANKRD12	FBXW7	0.548	1
ANKRD12	18q-Del	0.548	1
ANKRD12	Amp_16p13.13	0.548	1
FBXW7	IDS	0.548	1
FBXW7	LIN9	0.548	1
HLA-A	20q-Amp	0.548	1
HLA-A	3p-Del	0.548	1
HLA-A	Del_13q12.11	0.548	1
PTEN	Del_6q26	0.548	1
ZNF578	10q-Del	0.548	1
ZNF578	13q-Del	0.548	1
ZNF578	18q-Del	0.548	1
IDS	10q-Del	0.548	1
IDS	13q-Del	0.548	1
IDS	Amp_16p13.13	0.548	1
LIN9	10q-Del	0.548	1
LIN9	13q-Del	0.548	1
LIN9	18q-Del	0.548	1
SMAD4	10q-Del	0.548	1
SMAD4	13q-Del	0.548	1
SMAD4	Amp_13q22.1	0.548	1
SMAD4	Amp_16p13.13	0.548	1
20q-Amp	Amp_13q34	0.548	1
10q-Del	Amp_11p12	0.548	1
13q-Del	Amp_11p12	0.548	1
3p-Del	Amp_6p21.33	0.548	1
Amp_6p21.33	Del_6q26	0.548	1
Amp_13q34	Del_4q35.2	0.548	1
Amp_13q34	Del_6q26	0.548	1
Amp_Xq28	Del_13q12.11	0.548	1
Del_2q22.1	Del_4q35.2	0.548	1
Del_6q26	Del_22q13.32	0.548	1
FBXW7	Del_8p23.3	0.549	1
5p-Amp	10q-Del	0.549	1
11q-Del	Amp_16p13.13	0.549	1
13q-Del	Del_8p23.3	0.549	1
Amp_5p15.33	Del_15q21.1	0.549	1
Amp_5p15.33	Del_20p12.1	0.549	1
Amp_8q24.21	Del_1p13.2	0.549	1
Amp_13q22.1	Del_8p23.3	0.549	1
CASP8	Amp_17q12	0.55	1
CASP8	Del_1p36.23	0.55	1
MAPK1	NFE2L2	0.55	1
MAPK1	NHS	0.55	1
MAPK1	Amp_17q12	0.55	1
MAPK1	Del_1p36.23	0.55	1
NFE2L2	22q-Del	0.55	1
NFE2L2	Del_19q13.33	0.55	1
PTPRC	Amp_17q12	0.55	1
PTPRC	Del_1p36.23	0.55	1
RB1	Del_1p36.23	0.55	1
TP53	Del_1p36.23	0.55	1
NHS	Del_19q13.33	0.55	1
20p-Amp	11p-Del	0.55	1
22q-Del	Amp_17q12	0.55	1
ERBB2	Amp_3q26.31	0.552	1
Amp_15q26.1	Del_13q14.2	0.552	1
Del_8p23.1	Del_14q32.31	0.552	1
Del_7q34	Del_16q23.1	0.553	1
CASP8	20q-Amp	0.555	1
CASP8	3p-Del	0.555	1
CASP8	Del_4q35.2	0.555	1
CASP8	Del_6q26	0.555	1
CASP8	Del_13q12.11	0.555	1
MAPK1	20q-Amp	0.555	1
MAPK1	Del_4q35.2	0.555	1
MAPK1	Del_13q12.11	0.555	1
PTPRC	Del_6q26	0.555	1
RB1	3p-Del	0.555	1
RB1	Del_6q26	0.555	1
RB1	Del_13q12.11	0.555	1
STK11	Del_16q11.2	0.555	1
TP53	3p-Del	0.555	1
TP53	Del_6q26	0.555	1
TP53	Del_13q12.11	0.555	1
TCTE1	Del_4q21.3	0.555	1
TCTE1	Del_16q11.2	0.555	1
TCTE1	Del_16q23.1	0.555	1
22q-Del	3p-Del	0.555	1
22q-Del	Del_6q26	0.555	1
3p-Del	Del_19q13.33	0.555	1
Del_13q12.11	Del_19q13.33	0.555	1
ARID1A	EP300	0.556	1
EP300	Amp_11q22.1	0.556	1
8p-Del	Amp_2p24.3	0.556	1
Amp_2p24.3	Amp_7p11.2	0.556	1
Amp_2p24.3	Del_14q32.31	0.556	1
8q-Amp	11p-Del	0.558	1
HLA-A	Del_Xp11.3	0.559	1
PTEN	19p-Del	0.559	1
PTEN	Del_1p13.2	0.559	1
PTEN	Del_Xp11.3	0.559	1
SEMA4B	Amp_6p21.33	0.559	1
SEMA4B	Amp_Xq28	0.559	1
SEMA4B	Del_2q22.1	0.559	1
19p-Del	Amp_13q34	0.559	1
19p-Del	Amp_Xq28	0.559	1
19p-Del	Del_2q22.1	0.559	1
19p-Del	Del_22q13.32	0.559	1
8p-Del	Amp_5p15.33	0.559	1
Amp_6p21.33	Del_Xp11.3	0.559	1
Amp_8q24.21	Del_20p12.1	0.559	1
Amp_11q22.1	Del_3p14.2	0.559	1
Amp_Xq28	Del_1p13.2	0.559	1
Del_22q13.32	Del_Xp11.3	0.559	1
4p-Del	Amp_2p24.3	0.56	1
MTOR	Amp_3q28	0.562	1
Amp_3q28	Amp_21q22.13	0.562	1
NFE2L2	Amp_11q22.1	0.563	1
NHS	Del_5q35.2	0.563	1
ERBB3	Del_10q23.31	0.564	1
KRAS	Del_10q23.31	0.564	1
FAT2	Amp_19q13.13	0.564	1
FAT2	Del_10q23.31	0.564	1
SEMA4B	Amp_1q44	0.564	1
Amp_1q44	Del_Xp11.3	0.564	1
Amp_20q11.21	Del_18q21.2	0.565	1
ANKRD12	8q-Amp	0.567	1
ANKRD12	5q-Del	0.567	1
ANKRD12	6q-Del	0.567	1
ANKRD12	Amp_1p31.3	0.567	1
ANKRD12	Amp_9p24.1	0.567	1
ANKRD12	Amp_17q25.1	0.567	1
ANKRD12	Del_17q25.3	0.567	1
ZNF578	8q-Amp	0.567	1
ZNF578	5q-Del	0.567	1
ZNF578	Amp_1p31.3	0.567	1
ZNF578	Amp_9p24.1	0.567	1
IDS	8q-Amp	0.567	1
IDS	5q-Del	0.567	1
IDS	Amp_1p31.3	0.567	1
IDS	Amp_17q25.1	0.567	1
IDS	Del_2q37.1	0.567	1
LIN9	8q-Amp	0.567	1
LIN9	5q-Del	0.567	1
LIN9	6q-Del	0.567	1
LIN9	Amp_1p31.3	0.567	1
LIN9	Del_2q37.1	0.567	1
SMAD4	8q-Amp	0.567	1
SMAD4	5q-Del	0.567	1
SMAD4	6q-Del	0.567	1
SMAD4	Amp_1p31.3	0.567	1
SMAD4	Amp_9p24.1	0.567	1
5p-Amp	Del_13q14.2	0.567	1
Amp_9p24.1	Amp_11p12	0.567	1
Del_1p13.2	Del_11q23.3	0.567	1
Del_11q23.3	Del_Xp11.3	0.567	1
C3orf70	Del_10q23.31	0.568	1
KRAS	Amp_20q11.21	0.568	1
MUC4	Del_11q25	0.568	1
BAP1	Amp_19q13.13	0.568	1
C12orf43	Amp_19q13.13	0.568	1
C12orf43	Del_10q23.31	0.568	1
MED1	Amp_20q11.21	0.568	1
RAB35	Amp_19q13.13	0.568	1
RAB35	Del_10q23.31	0.568	1
HLA-A	17p-Del	0.571	1
BAP1	Del_11q25	0.571	1
C12orf43	Del_11q25	0.571	1
RAB35	Del_11q25	0.571	1
1q-Amp	Del_2q22.1	0.571	1
17p-Del	Amp_6p21.33	0.571	1
STK11	Amp_2p24.3	0.572	1
STK11	Del_18q21.2	0.572	1
TCTE1	Amp_2p24.3	0.572	1
1p-Amp	8q-Amp	0.572	1
8q-Amp	Del_15q21.1	0.572	1
10q-Del	Amp_19q13.13	0.572	1
13q-Del	Amp_19q13.13	0.572	1
5q-Del	Del_15q21.1	0.572	1
Amp_16p13.13	Amp_19q13.13	0.572	1
Amp_16p13.13	Del_10q23.31	0.572	1
Amp_17q25.1	Del_20p12.1	0.572	1
MAPK1	1q-Amp	0.573	1
MAPK1	17p-Del	0.573	1
MUC4	18q-Del	0.573	1
MUC4	Amp_16p13.13	0.573	1
PTPRC	17p-Del	0.573	1
TP53	17p-Del	0.573	1
1q-Amp	Del_19q13.33	0.573	1
17p-Del	22q-Del	0.573	1
17p-Del	Del_16q11.2	0.573	1
17p-Del	Del_19q13.33	0.573	1
MTOR	Amp_3q26.31	0.574	1
PIK3CA	STK11	0.574	1
PIK3CA	TCTE1	0.574	1
17p-Del	Amp_3q28	0.574	1
4p-Del	Amp_15q26.1	0.574	1
FBXW7	Del_22q13.32	0.575	1
HLA-A	Amp_13q22.1	0.575	1
10q-Del	Amp_Xq28	0.575	1
13q-Del	Amp_Xq28	0.575	1
18q-Del	Amp_6p21.33	0.575	1
18q-Del	Amp_13q34	0.575	1
18q-Del	Amp_Xq28	0.575	1
18q-Del	Del_2q22.1	0.575	1
Amp_13q22.1	Amp_Xq28	0.575	1
Amp_16p13.13	Del_22q13.32	0.575	1
3p-Del	Amp_1q21.3	0.577	1
Del_6p24.2	Del_8p23.1	0.577	1
CASP8	ERBB3	0.579	1
CASP8	KRAS	0.579	1
ERBB3	MAPK1	0.579	1
ERBB3	22q-Del	0.579	1
ERBB3	Del_19q13.33	0.579	1
HLA-B	22q-Del	0.579	1
KRAS	MAPK1	0.579	1
KRAS	RB1	0.579	1
KRAS	22q-Del	0.579	1
KRAS	Del_19q13.33	0.579	1
MAPK1	Amp_2q33.1	0.579	1
MAPK1	Amp_11q13.3	0.579	1
RB1	Amp_2q33.1	0.579	1
RB1	Amp_11q13.3	0.579	1
FAT2	Del_19q13.33	0.579	1
MED1	22q-Del	0.579	1
MED1	Del_19q13.33	0.579	1
22q-Del	Amp_2q33.1	0.579	1
4p-Del	Del_6q26	0.579	1
Amp_2q33.1	Del_19q13.33	0.579	1
Del_1p36.23	Del_3p14.2	0.579	1
SMAD4	Amp_1q21.3	0.58	1
Amp_19q13.13	Del_10q23.31	0.58	1
1q-Amp	Del_8p23.1	0.581	1
ARID1A	SEMA4B	0.582	1
ARID1A	Del_Xp11.3	0.582	1
BAP1	20p-Amp	0.582	1
BAP1	Del_5q12.1	0.582	1
C12orf43	Del_5q12.1	0.582	1
RAB35	20p-Amp	0.582	1
RAB35	Del_5q12.1	0.582	1
SEMA4B	Amp_15q26.1	0.582	1
SEMA4B	Del_14q32.31	0.582	1
USP28	20p-Amp	0.582	1
Amp_15q26.1	Del_1p13.2	0.582	1
Amp_15q26.1	Del_Xp11.3	0.582	1
Del_14q32.31	Del_Xp11.3	0.582	1
ARID1A	4q-Del	0.583	1
ARID1A	Del_4q22.1	0.583	1
4q-Del	Del_14q32.31	0.583	1
Del_2q37.1	Del_Xq21.33	0.583	1
Del_6p24.2	Del_14q32.31	0.583	1
ERBB2	Amp_1q21.3	0.585	1
HLA-B	Amp_8q24.21	0.585	1
TCTE1	Amp_5p15.33	0.585	1
4q-Del	Amp_3q26.31	0.585	1
Amp_3q26.31	Del_4q22.1	0.585	1
KRAS	20p-Amp	0.586	1
FAT2	Del_5q12.1	0.586	1
MED1	20p-Amp	0.586	1
20p-Amp	Amp_11q13.3	0.586	1
ANKRD12	1p-Amp	0.587	1
ANKRD12	Del_15q21.1	0.587	1
ANKRD12	Del_20p12.1	0.587	1
EP300	20q-Amp	0.587	1
EP300	Del_6q26	0.587	1
EP300	Del_7q34	0.587	1
ZNF578	1p-Amp	0.587	1
IDS	1p-Amp	0.587	1
SMAD4	1p-Amp	0.587	1
SMAD4	Del_20p12.1	0.587	1
1p-Amp	Amp_11p12	0.587	1
Amp_2p24.3	Del_13q12.11	0.587	1
Amp_11p12	Del_15q21.1	0.587	1
Del_7q34	Del_18q21.2	0.587	1
NFE2L2	Amp_21q22.13	0.589	1
STK11	Del_6p24.2	0.589	1
BAP1	Del_11q23.3	0.589	1
C12orf43	Del_11q23.3	0.589	1
NHS	Amp_21q22.13	0.589	1
RAB35	Del_11q23.3	0.589	1
TCTE1	4q-Del	0.589	1
TCTE1	Del_4q22.1	0.589	1
TCTE1	Del_6p24.2	0.589	1
TRIM9	Amp_17q12	0.589	1
Amp_2p24.3	Amp_8q24.21	0.589	1
Amp_8q24.21	Del_18q21.2	0.589	1
Amp_17q12	Amp_21q22.13	0.589	1
CASP8	Del_11p15.1	0.591	1
PIK3CA	Del_8p23.3	0.591	1
TP53	Del_11p15.1	0.591	1
22q-Del	Del_11p15.1	0.591	1
Amp_1q21.3	Del_14q32.31	0.591	1
Amp_1q21.3	Del_Xq21.33	0.591	1
ZNF578	Amp_3q28	0.592	1
IDS	Amp_3q28	0.592	1
4q-Del	Amp_11q22.1	0.592	1
Amp_11q22.1	Del_4q22.1	0.592	1
Del_5q35.2	Del_6p24.2	0.592	1
HLA-A	Amp_20q11.21	0.593	1
Amp_6p21.33	Amp_20q11.21	0.593	1
Amp_20q11.21	Del_2q22.1	0.593	1
PIK3CA	Amp_13q34	0.594	1
PIK3CA	Del_22q13.32	0.594	1
Amp_3q28	Del_17p12	0.595	1
Del_11p15.1	Del_22q13.32	0.595	1
C3orf70	8p-Del	0.596	1
C3orf70	Amp_11q22.1	0.596	1
BAP1	8p-Del	0.596	1
BAP1	Amp_11q22.1	0.596	1
BAP1	Del_5q35.2	0.596	1
C12orf43	8p-Del	0.596	1
C12orf43	Amp_11q22.1	0.596	1
C12orf43	Del_5q35.2	0.596	1
RAB35	Amp_11q22.1	0.596	1
RAB35	Del_5q35.2	0.596	1
USP28	Amp_11q22.1	0.596	1
20q-Amp	Amp_7p11.2	0.596	1
20q-Amp	Amp_15q26.1	0.596	1
20q-Amp	Del_14q32.31	0.596	1
Amp_5p15.33	Del_8p23.1	0.596	1
Amp_7p11.2	Del_6q26	0.596	1
Amp_15q26.1	Del_6q26	0.596	1
Amp_15q26.1	Del_13q12.11	0.596	1
Del_6q26	Del_14q32.31	0.596	1
Del_13q12.11	Del_14q32.31	0.596	1
5p-Amp	Amp_9p24.1	0.597	1
11q-Del	6q-Del	0.597	1
Amp_17q25.1	Del_8p23.3	0.597	1
13q-Del	Amp_1q21.3	0.598	1
Amp_19q13.13	Del_17p12	0.598	1
Del_1p36.23	Del_11q25	0.598	1
NFE2L2	5p-Amp	0.599	1
20p-Amp	Del_8p23.1	0.599	1
5p-Amp	Del_1p36.23	0.599	1
11q-Del	Amp_17q12	0.599	1
11q-Del	Del_1p36.23	0.599	1
FBXW7	20p-Amp	0.6	1
20p-Amp	Amp_13q22.1	0.6	1
MTOR	4p-Del	0.601	1
TRIM9	4p-Del	0.601	1
Amp_3q26.31	Del_17q25.3	0.601	1
PTEN	Amp_3q28	0.602	1
Amp_3q28	Amp_6p21.33	0.602	1
Amp_3q28	Del_2q22.1	0.602	1
Amp_3q28	Del_22q13.32	0.602	1
ERBB3	Del_17p12	0.603	1
HLA-B	Del_17p12	0.603	1
KRAS	Amp_1q44	0.603	1
ZNF578	Amp_3q26.31	0.603	1
FAT2	Amp_1q44	0.603	1
IDS	Amp_3q26.31	0.603	1
1p-Amp	Del_15q21.1	0.603	1
4p-Del	Del_6p24.2	0.603	1
Amp_11q13.3	Del_17p12	0.603	1
4p-Del	Del_8p23.3	0.604	1
HLA-A	5q-Del	0.605	1
PTEN	5q-Del	0.605	1
PTEN	6q-Del	0.605	1
PTEN	Amp_1p31.3	0.605	1
PTEN	Amp_9p24.1	0.605	1
PTEN	Amp_17q25.1	0.605	1
8q-Amp	Del_22q13.32	0.605	1
5q-Del	Amp_13q34	0.605	1
5q-Del	Amp_Xq28	0.605	1
5q-Del	Del_22q13.32	0.605	1
6q-Del	Amp_13q34	0.605	1
6q-Del	Amp_Xq28	0.605	1
6q-Del	Del_22q13.32	0.605	1
Amp_1p31.3	Amp_Xq28	0.605	1
Amp_9p24.1	Del_2q22.1	0.605	1
Amp_17q25.1	Del_22q13.32	0.605	1
Amp_Xq28	Del_17q25.3	0.605	1
FBXW7	STK11	0.606	1
STK11	10q-Del	0.606	1
STK11	18q-Del	0.606	1
STK11	Amp_13q22.1	0.606	1
STK11	Amp_16p13.13	0.606	1
TCTE1	10q-Del	0.606	1
TCTE1	13q-Del	0.606	1
ANKRD12	Amp_6p21.33	0.608	1
ANKRD12	Amp_Xq28	0.608	1
ANKRD12	Del_22q13.32	0.608	1
HLA-A	LIN9	0.608	1
HLA-A	Amp_11p12	0.608	1
PTEN	ZNF578	0.608	1
PTEN	LIN9	0.608	1
PTEN	SMAD4	0.608	1
ZNF578	Amp_6p21.33	0.608	1
ZNF578	Amp_Xq28	0.608	1
ZNF578	Del_2q22.1	0.608	1
ZNF578	Del_22q13.32	0.608	1
IDS	Amp_6p21.33	0.608	1
IDS	Amp_Xq28	0.608	1
IDS	Del_2q22.1	0.608	1
IDS	Del_22q13.32	0.608	1
LIN9	Del_2q22.1	0.608	1
LIN9	Del_22q13.32	0.608	1
SMAD4	Amp_6p21.33	0.608	1
SMAD4	Amp_13q34	0.608	1
SMAD4	Amp_Xq28	0.608	1
SMAD4	Del_2q22.1	0.608	1
11q-Del	19p-Del	0.608	1
11q-Del	Del_1p13.2	0.608	1
Amp_6p21.33	Amp_11p12	0.608	1
Amp_11p12	Amp_Xq28	0.608	1
ERBB3	8p-Del	0.609	1
ERBB3	Amp_11q22.1	0.609	1
FAT2	Amp_11q22.1	0.609	1
FAT2	Del_5q35.2	0.609	1
ERBB2	MAPK1	0.61	1
ERBB2	PTPRC	0.61	1
ERBB2	22q-Del	0.61	1
PIK3CA	TRIM9	0.61	1
PTPRC	ZNF750	0.61	1
BAP1	Del_7q34	0.61	1
RAB35	Del_7q34	0.61	1
USP28	Del_7q34	0.61	1
ZNF750	22q-Del	0.61	1
ZNF750	Del_19q13.33	0.61	1
ARID1A	Amp_13q22.1	0.611	1
FBXW7	Amp_7p11.2	0.611	1
FBXW7	Del_14q32.31	0.611	1
NHS	Del_4q21.3	0.611	1
10q-Del	Del_14q32.31	0.611	1
Amp_7p11.2	Amp_16p13.13	0.611	1
Amp_13q22.1	Amp_15q26.1	0.611	1
Amp_13q22.1	Del_14q32.31	0.611	1
Amp_16p13.13	Del_14q32.31	0.611	1
Amp_17q12	Del_4q21.3	0.611	1
Amp_17q12	Del_16q11.2	0.611	1
Amp_17q12	Del_16q23.1	0.611	1
Amp_1q21.3	Del_11q23.3	0.612	1
ERBB2	3q-Amp	0.613	1
HLA-A	Amp_5p15.33	0.613	1
Amp_5p15.33	Del_2q22.1	0.613	1
Amp_6p21.33	Del_3p14.2	0.613	1
Amp_8q24.21	Amp_Xq28	0.613	1
Amp_8q24.21	Del_2q22.1	0.613	1
ZNF750	Amp_19q13.13	0.614	1
20p-Amp	Amp_8q24.21	0.614	1
20p-Amp	Del_10q23.31	0.614	1
HLA-B	Amp_21q22.13	0.616	1
KRAS	MTOR	0.616	1
KRAS	TRIM9	0.616	1
KRAS	Amp_21q22.13	0.616	1
MTOR	MED1	0.616	1
MTOR	Amp_11q13.3	0.616	1
PTEN	Del_11q23.3	0.616	1
FAT2	Amp_21q22.13	0.616	1
3q-Amp	Del_1p13.2	0.616	1
3q-Amp	Del_Xp11.3	0.616	1
MTOR	20q-Amp	0.617	1
MTOR	3p-Del	0.617	1
MTOR	Del_4q35.2	0.617	1
TRIM9	20q-Amp	0.617	1
TRIM9	Del_6q26	0.617	1
3p-Del	Amp_21q22.13	0.617	1
MUC4	Amp_17q12	0.618	1
MUC4	Del_1p36.23	0.618	1
1q-Amp	Amp_7p11.2	0.618	1
17p-Del	Amp_7p11.2	0.618	1
Amp_3q26.31	Amp_6p21.33	0.618	1
Amp_3q26.31	Amp_13q34	0.618	1
Amp_3q26.31	Amp_Xq28	0.618	1
EP300	Del_4q21.3	0.619	1
ZNF578	Amp_20q11.21	0.619	1
IDS	Amp_20q11.21	0.619	1
SMAD4	Amp_20q11.21	0.619	1
Amp_11p12	Amp_20q11.21	0.619	1
Amp_19q13.13	Del_4q35.2	0.619	1
Amp_19q13.13	Del_6q26	0.619	1
Del_4q21.3	Del_18q21.2	0.619	1
MUC4	5q-Del	0.62	1
5p-Amp	Del_3p14.2	0.621	1
FBXW7	Del_8p23.1	0.622	1
PIK3CA	Amp_13q22.1	0.622	1
11p-Del	Del_7q34	0.622	1
13q-Del	Del_8p23.1	0.622	1
18q-Del	Del_13q14.2	0.622	1
22q-Del	Del_11q25	0.622	1
Amp_13q22.1	Del_8p23.1	0.622	1
MUC4	19p-Del	0.623	1
MUC4	Del_1p13.2	0.623	1
TRIM9	Del_3p14.2	0.623	1
STK11	8q-Amp	0.624	1
STK11	5q-Del	0.624	1
STK11	6q-Del	0.624	1
STK11	Amp_1p31.3	0.624	1
STK11	Amp_9p24.1	0.624	1
STK11	Amp_17q25.1	0.624	1
STK11	Del_17q25.3	0.624	1
TCTE1	8q-Amp	0.624	1
TCTE1	6q-Del	0.624	1
TCTE1	Amp_9p24.1	0.624	1
Amp_8q24.21	Del_Xq21.33	0.624	1
C3orf70	Del_4q21.3	0.625	1
C3orf70	Del_16q11.2	0.625	1
C3orf70	Del_16q23.1	0.625	1
MUC4	Del_11q23.3	0.625	1
BAP1	Del_4q21.3	0.625	1
BAP1	Del_16q11.2	0.625	1
BAP1	Del_16q23.1	0.625	1
RAB35	Del_4q21.3	0.625	1
RAB35	Del_16q11.2	0.625	1
RAB35	Del_16q23.1	0.625	1
USP28	Del_4q21.3	0.625	1
BAP1	3q-Amp	0.627	1
USP28	3q-Amp	0.627	1
FBXW7	8p-Del	0.628	1
10q-Del	8p-Del	0.628	1
11p-Del	22q-Del	0.628	1
13q-Del	8p-Del	0.628	1
8p-Del	Amp_13q22.1	0.628	1
8p-Del	Amp_16p13.13	0.628	1
Amp_11q22.1	Amp_16p13.13	0.628	1
ANKRD12	Amp_7p11.2	0.629	1
ANKRD12	Amp_15q26.1	0.629	1
ANKRD12	Del_14q32.31	0.629	1
ARID1A	LIN9	0.629	1
ARID1A	Amp_11p12	0.629	1
ZNF578	Amp_15q26.1	0.629	1
ZNF578	Del_14q32.31	0.629	1
IDS	Amp_15q26.1	0.629	1
LIN9	Amp_7p11.2	0.629	1
LIN9	Amp_15q26.1	0.629	1
SMAD4	Amp_7p11.2	0.629	1
Amp_11p12	Amp_15q26.1	0.629	1
Amp_11p12	Del_14q32.31	0.629	1
Del_1p36.23	Del_11q23.3	0.629	1
NFE2L2	SEMA4B	0.63	1
NFE2L2	Del_1p13.2	0.63	1
NFE2L2	Del_Xp11.3	0.63	1
NHS	19p-Del	0.63	1
NHS	Del_1p13.2	0.63	1
SEMA4B	Amp_17q12	0.63	1
SEMA4B	Del_1p36.23	0.63	1
19p-Del	Amp_17q12	0.63	1
19p-Del	Del_1p36.23	0.63	1
Amp_17q12	Del_1p13.2	0.63	1
ERBB3	Del_7q34	0.631	1
Amp_2q33.1	Del_7q34	0.631	1
Amp_11q13.3	Del_7q34	0.631	1
IDS	Amp_8q24.21	0.632	1
SMAD4	Amp_8q24.21	0.632	1
3q-Amp	Del_4q35.2	0.632	1
3q-Amp	Del_6q26	0.632	1
Xp-Del	Amp_1q44	0.632	1
Amp_1q44	Del_Xq21.33	0.632	1
Amp_3q28	Del_7q34	0.632	1
Amp_19q13.13	Del_2q37.1	0.632	1
Del_11q25	Del_13q12.11	0.632	1
HLA-A	Del_17p12	0.634	1
MTOR	1q-Amp	0.634	1
PTEN	Amp_1q44	0.634	1
PTEN	Del_17p12	0.634	1
TRIM9	1q-Amp	0.634	1
TRIM9	17p-Del	0.634	1
Amp_1q44	Del_2q22.1	0.634	1
Del_2q22.1	Del_17p12	0.634	1
ERBB2	20p-Amp	0.635	1
ERBB2	Del_5q12.1	0.635	1
EP300	NHS	0.636	1
EP300	Amp_17q12	0.636	1
HLA-A	Del_15q21.1	0.636	1
PTEN	Del_15q21.1	0.636	1
C12orf43	Amp_3q28	0.636	1
NHS	Amp_2p24.3	0.636	1
NHS	Del_18q21.2	0.636	1
USP28	Amp_3q28	0.636	1
Amp_2p24.3	Del_1p36.23	0.636	1
Amp_13q34	Del_15q21.1	0.636	1
Del_2q22.1	Del_15q21.1	0.636	1
Del_2q22.1	Del_20p12.1	0.636	1
PIK3CA	Amp_2q33.1	0.637	1
20p-Amp	6q-Del	0.638	1
8q-Amp	Del_5q12.1	0.638	1
ARID1A	Amp_1p31.3	0.64	1
ARID1A	Amp_9p24.1	0.64	1
C3orf70	Amp_2p24.3	0.64	1
C3orf70	Del_18q21.2	0.64	1
EP300	BAP1	0.64	1
EP300	RAB35	0.64	1
BAP1	Amp_2p24.3	0.64	1
BAP1	Del_18q21.2	0.64	1
RAB35	Amp_2p24.3	0.64	1
RAB35	Del_18q21.2	0.64	1
8q-Amp	Amp_7p11.2	0.64	1
8q-Amp	Amp_15q26.1	0.64	1
5q-Del	Amp_15q26.1	0.64	1
6q-Del	Amp_15q26.1	0.64	1
6q-Del	Del_14q32.31	0.64	1
Amp_7p11.2	Del_17q25.3	0.64	1
Amp_15q26.1	Del_17q25.3	0.64	1
Amp_17q25.1	Del_14q32.31	0.64	1
CASP8	MAPK1	0.641	1
CASP8	22q-Del	0.641	1
MAPK1	PTPRC	0.641	1
MAPK1	RB1	0.641	1
MAPK1	TP53	0.641	1
MAPK1	Del_19q13.33	0.641	1
PTPRC	RB1	0.641	1
PTPRC	Del_19q13.33	0.641	1
RB1	22q-Del	0.641	1
RB1	Del_19q13.33	0.641	1
TP53	Del_19q13.33	0.641	1
20q-Amp	Del_8p23.3	0.641	1
Amp_2p24.3	Del_11p15.1	0.641	1
Del_4q35.2	Del_8p23.3	0.641	1
CASP8	Del_2q37.1	0.642	1
FBXW7	Amp_5p15.33	0.642	1
PTPRC	Del_2q37.1	0.642	1
5p-Amp	Del_4q21.3	0.642	1
5p-Amp	Del_8p23.3	0.642	1
5p-Amp	Del_16q11.2	0.642	1
11p-Del	Amp_Xq28	0.642	1
11p-Del	Del_22q13.32	0.642	1
22q-Del	Del_2q37.1	0.642	1
STK11	1p-Amp	0.643	1
STK11	Del_15q21.1	0.643	1
STK11	Del_20p12.1	0.643	1
TCTE1	Del_20p12.1	0.643	1
Amp_20q11.21	Del_2q37.1	0.643	1
ANKRD12	Amp_1q44	0.645	1
ANKRD12	Del_17p12	0.645	1
ERBB2	Amp_21q22.13	0.645	1
ZNF578	Del_17p12	0.645	1
C12orf43	Amp_3q26.31	0.645	1
SMAD4	Amp_1q44	0.645	1
USP28	Amp_3q26.31	0.645	1
Amp_1q44	Del_3p14.2	0.645	1
Amp_5p15.33	Del_17p12	0.645	1
1p-Amp	Del_8p23.3	0.646	1
20p-Amp	Del_5q12.1	0.646	1
5p-Amp	Del_20p12.1	0.646	1
1q-Amp	Del_6q26	0.647	1
20q-Amp	17p-Del	0.647	1
TP53	Del_11q23.3	0.648	1
22q-Del	Del_11q23.3	0.648	1
HLA-B	Amp_3q28	0.649	1
FAT2	Amp_3q28	0.649	1
Amp_7p11.2	Amp_20q11.21	0.649	1
Amp_15q26.1	Amp_20q11.21	0.649	1
Amp_19q13.13	Del_20p12.1	0.65	1
Amp_1q44	Del_13q14.2	0.651	1
19p-Del	Del_13q14.2	0.652	1
4q-Del	Del_16q11.2	0.652	1
4q-Del	Del_16q23.1	0.652	1
5q-Del	Amp_1q21.3	0.652	1
Amp_1q21.3	Amp_9p24.1	0.652	1
ERBB3	Del_3p14.2	0.653	1
HLA-B	Amp_5p15.33	0.653	1
MED1	Del_3p14.2	0.653	1
Amp_2q33.1	Amp_5p15.33	0.653	1
HLA-B	Del_16q11.2	0.654	1
HLA-B	Del_16q23.1	0.654	1
KRAS	Del_16q11.2	0.654	1
FAT2	Del_4q21.3	0.654	1
1q-Amp	Del_6p24.2	0.654	1
Amp_1q21.3	Del_16q23.1	0.654	1
Amp_11q13.3	Del_16q23.1	0.654	1
C3orf70	4q-Del	0.655	1
C3orf70	Del_4q22.1	0.655	1
C3orf70	Del_6p24.2	0.655	1
BAP1	4q-Del	0.655	1
BAP1	Del_4q22.1	0.655	1
C12orf43	Del_6p24.2	0.655	1
RAB35	4q-Del	0.655	1
RAB35	Del_4q22.1	0.655	1
RAB35	Del_6p24.2	0.655	1
USP28	4q-Del	0.655	1
3q-Del	Del_10q23.31	0.655	1
ERBB2	Del_5q35.2	0.656	1
ERBB3	SEMA4B	0.656	1
ERBB3	Del_Xp11.3	0.656	1
HLA-B	19p-Del	0.656	1
HLA-B	Del_1p13.2	0.656	1
HLA-B	Del_Xp11.3	0.656	1
KRAS	SEMA4B	0.656	1
KRAS	19p-Del	0.656	1
KRAS	Del_1p13.2	0.656	1
KRAS	Del_Xp11.3	0.656	1
FAT2	19p-Del	0.656	1
FAT2	Del_1p13.2	0.656	1
MED1	SEMA4B	0.656	1
MED1	Del_1p13.2	0.656	1
MED1	Del_Xp11.3	0.656	1
SEMA4B	Amp_2q33.1	0.656	1
ZNF750	8p-Del	0.656	1
ZNF750	Del_5q35.2	0.656	1
20p-Amp	3p-Del	0.656	1
20p-Amp	Del_6q26	0.656	1
Amp_11q13.3	Del_Xp11.3	0.656	1
CASP8	Amp_1q21.3	0.657	1
ERBB3	11q-Del	0.657	1
ERBB3	Del_8p23.3	0.657	1
HLA-B	Del_8p23.3	0.657	1
KRAS	5p-Amp	0.657	1
KRAS	11q-Del	0.657	1
MAPK1	Amp_1q21.3	0.657	1
TP53	Amp_1q21.3	0.657	1
MED1	5p-Amp	0.657	1
NHS	Del_13q14.2	0.657	1
5p-Amp	Amp_11q13.3	0.657	1
18q-Del	Del_7q34	0.657	1
Amp_1q21.3	Del_19q13.33	0.657	1
Amp_3q28	Amp_8q24.21	0.657	1
5p-Amp	Del_Xq21.33	0.658	1
11q-Del	Xp-Del	0.658	1
11q-Del	Del_Xq21.33	0.658	1
Amp_8q24.21	Amp_11q22.1	0.658	1
Amp_11p12	Del_11q25	0.658	1
Amp_15q26.1	Del_11q25	0.658	1
PIK3CA	20q-Amp	0.66	1
PIK3CA	Del_6q26	0.66	1
NHS	Del_4q22.1	0.66	1
Amp_17q12	Del_4q22.1	0.66	1
PTEN	TCTE1	0.661	1
STK11	Amp_6p21.33	0.661	1
STK11	Amp_13q34	0.661	1
STK11	Amp_Xq28	0.661	1
STK11	Del_2q22.1	0.661	1
TCTE1	Amp_6p21.33	0.661	1
Amp_8q24.21	Amp_20q11.21	0.661	1
EP300	Del_11q23.3	0.662	1
HLA-B	Amp_3q26.31	0.662	1
FAT2	Amp_3q26.31	0.662	1
Amp_2q33.1	Amp_3q26.31	0.662	1
STK11	Del_2q37.1	0.663	1
FBXW7	Amp_20q11.21	0.664	1
10q-Del	Amp_20q11.21	0.664	1
13q-Del	Amp_20q11.21	0.664	1
18q-Del	Amp_20q11.21	0.664	1
8q-Amp	8p-Del	0.665	1
8q-Amp	Amp_11q22.1	0.665	1
8q-Amp	Del_5q35.2	0.665	1
6q-Del	Del_5q35.2	0.665	1
8p-Del	Amp_1p31.3	0.665	1
8p-Del	Amp_17q25.1	0.665	1
Amp_1p31.3	Amp_11q22.1	0.665	1
Amp_9p24.1	Amp_11q22.1	0.665	1
Amp_11q22.1	Amp_17q25.1	0.665	1
Amp_11q22.1	Del_17q25.3	0.665	1
CASP8	Del_10q23.31	0.666	1
MAPK1	Del_10q23.31	0.666	1
MUC4	Xp-Del	0.666	1
PTPRC	Amp_19q13.13	0.666	1
RB1	Amp_19q13.13	0.666	1
3p-Del	Amp_20q11.21	0.666	1
Amp_20q11.21	Del_4q35.2	0.666	1
ERBB2	Amp_1q44	0.667	1
HLA-A	Amp_6p21.33	0.667	1
HLA-A	Amp_13q34	0.667	1
HLA-A	Del_2q22.1	0.667	1
HLA-A	Del_22q13.32	0.667	1
PIK3CA	20p-Amp	0.667	1
PTEN	Amp_6p21.33	0.667	1
SEMA4B	4p-Del	0.667	1
4p-Del	Del_1p13.2	0.667	1
4p-Del	Del_Xp11.3	0.667	1
Amp_6p21.33	Del_22q13.32	0.667	1
Amp_13q34	Amp_Xq28	0.667	1
Amp_13q34	Del_2q22.1	0.667	1
Amp_13q34	Del_22q13.32	0.667	1
Del_3p14.2	Del_16q11.2	0.667	1
MUC4	Del_20p12.1	0.668	1
Amp_3q28	Amp_13q22.1	0.668	1
Amp_7p11.2	Amp_8q24.21	0.668	1
ARID1A	1p-Amp	0.669	1
ARID1A	Del_15q21.1	0.669	1
Amp_7p11.2	Del_15q21.1	0.669	1
FBXW7	3p-Del	0.67	1
FBXW7	Del_4q35.2	0.67	1
20q-Amp	13q-Del	0.67	1
C3orf70	10q-Del	0.671	1
C3orf70	13q-Del	0.671	1
C3orf70	18q-Del	0.671	1
C3orf70	Amp_13q22.1	0.671	1
C3orf70	Amp_16p13.13	0.671	1
FBXW7	BAP1	0.671	1
FBXW7	C12orf43	0.671	1
FBXW7	RAB35	0.671	1
FBXW7	USP28	0.671	1
BAP1	13q-Del	0.671	1
BAP1	18q-Del	0.671	1
BAP1	Amp_16p13.13	0.671	1
C12orf43	10q-Del	0.671	1
C12orf43	13q-Del	0.671	1
RAB35	10q-Del	0.671	1
RAB35	13q-Del	0.671	1
RAB35	18q-Del	0.671	1
RAB35	Amp_13q22.1	0.671	1
RAB35	Amp_16p13.13	0.671	1
USP28	Amp_16p13.13	0.671	1
ANKRD12	Amp_17q12	0.674	1
ANKRD12	Del_1p36.23	0.674	1
NFE2L2	ZNF578	0.674	1
NFE2L2	IDS	0.674	1
NFE2L2	LIN9	0.674	1
NFE2L2	SMAD4	0.674	1
NFE2L2	Amp_11p12	0.674	1
ZNF578	NHS	0.674	1
ZNF578	Del_1p36.23	0.674	1
IDS	Amp_17q12	0.674	1
LIN9	NHS	0.674	1
NHS	Amp_11p12	0.674	1
SMAD4	Del_1p36.23	0.674	1
Amp_11p12	Amp_17q12	0.674	1
Amp_11p12	Del_1p36.23	0.674	1
CASP8	Amp_21q22.13	0.675	1
MAPK1	MTOR	0.675	1
MAPK1	Amp_21q22.13	0.675	1
MTOR	PTPRC	0.675	1
MTOR	TP53	0.675	1
MTOR	22q-Del	0.675	1
PTPRC	Amp_21q22.13	0.675	1
TRIM9	Del_19q13.33	0.675	1
22q-Del	Amp_21q22.13	0.675	1
MUC4	11q-Del	0.676	1
MUC4	Del_8p23.3	0.676	1
NFE2L2	4p-Del	0.676	1
NHS	4p-Del	0.676	1
20p-Amp	Del_15q21.1	0.676	1
EP300	ERBB3	0.677	1
EP300	KRAS	0.677	1
EP300	MED1	0.677	1
HLA-B	Amp_2p24.3	0.677	1
HLA-B	Del_18q21.2	0.677	1
FAT2	Amp_2p24.3	0.677	1
FAT2	Del_18q21.2	0.677	1
MED1	Amp_2p24.3	0.677	1
Amp_2p24.3	Amp_11q13.3	0.677	1
Amp_19q13.13	Del_11p15.1	0.678	1
1q-Amp	17p-Del	0.679	1
22q-Del	Amp_3q28	0.679	1
3q-Del	Amp_11q22.1	0.679	1
20q-Amp	Del_11p15.1	0.68	1
3q-Amp	Del_16q11.2	0.68	1
ARID1A	STK11	0.681	1
EP300	Del_2q37.1	0.681	1
MUC4	Amp_20q11.21	0.681	1
PIK3CA	8q-Amp	0.681	1
STK11	Amp_7p11.2	0.681	1
STK11	Del_14q32.31	0.681	1
TCTE1	Amp_7p11.2	0.681	1
TCTE1	Amp_15q26.1	0.681	1
TCTE1	Del_14q32.31	0.681	1
3q-Amp	13q-Del	0.681	1
3q-Amp	Amp_13q22.1	0.681	1
ERBB2	19p-Del	0.682	1
SEMA4B	20q-Amp	0.682	1
SEMA4B	3p-Del	0.682	1
SEMA4B	Del_13q12.11	0.682	1
ZNF750	19p-Del	0.682	1
ZNF750	Del_1p13.2	0.682	1
ZNF750	Del_Xp11.3	0.682	1
20q-Amp	Del_1p13.2	0.682	1
19p-Del	Del_6q26	0.682	1
3p-Del	Del_Xp11.3	0.682	1
Amp_1q21.3	Del_2q37.1	0.682	1
Del_6p24.2	Del_18q21.2	0.682	1
KRAS	Del_11q25	0.684	1
ZNF578	Del_8p23.3	0.684	1
IDS	5p-Amp	0.684	1
IDS	11q-Del	0.684	1
LIN9	Del_8p23.3	0.684	1
SMAD4	5p-Amp	0.684	1
3q-Amp	Amp_13q34	0.684	1
3q-Amp	Del_2q22.1	0.684	1
3q-Amp	Del_8p23.1	0.684	1
5p-Amp	Amp_11p12	0.684	1
11q-Del	Amp_11p12	0.684	1
Amp_2q33.1	Del_11q25	0.684	1
Amp_3q26.31	Amp_8q24.21	0.684	1
Amp_11p12	Del_8p23.3	0.684	1
CASP8	20p-Amp	0.685	1
FBXW7	NHS	0.685	1
MAPK1	20p-Amp	0.685	1
NFE2L2	10q-Del	0.685	1
PTPRC	Del_5q12.1	0.685	1
RB1	Del_5q12.1	0.685	1
NHS	10q-Del	0.685	1
NHS	13q-Del	0.685	1
NHS	18q-Del	0.685	1
NHS	Amp_16p13.13	0.685	1
20p-Amp	Del_19q13.33	0.685	1
10q-Del	Amp_3q26.31	0.685	1
10q-Del	Del_16q11.2	0.685	1
11p-Del	Del_14q32.31	0.685	1
13q-Del	Del_16q11.2	0.685	1
18q-Del	Amp_8q24.21	0.685	1
18q-Del	Del_4q21.3	0.685	1
Amp_3q26.31	Amp_13q22.1	0.685	1
Amp_13q22.1	Amp_17q12	0.685	1
Amp_13q22.1	Del_16q11.2	0.685	1
Amp_13q22.1	Del_16q23.1	0.685	1
Amp_16p13.13	Del_16q23.1	0.685	1
Del_5q12.1	Del_19q13.33	0.685	1
Amp_5p15.33	Del_6q26	0.686	1
C3orf70	5q-Del	0.687	1
C3orf70	6q-Del	0.687	1
C3orf70	Amp_9p24.1	0.687	1
C3orf70	Del_17q25.3	0.687	1
PIK3CA	11p-Del	0.687	1
BAP1	8q-Amp	0.687	1
BAP1	5q-Del	0.687	1
BAP1	Amp_1p31.3	0.687	1
BAP1	Amp_9p24.1	0.687	1
BAP1	Amp_17q25.1	0.687	1
BAP1	Del_17q25.3	0.687	1
C12orf43	5q-Del	0.687	1
C12orf43	Amp_9p24.1	0.687	1
C12orf43	Amp_17q25.1	0.687	1
C12orf43	Del_17q25.3	0.687	1
RAB35	8q-Amp	0.687	1
RAB35	5q-Del	0.687	1
RAB35	6q-Del	0.687	1
RAB35	Amp_17q25.1	0.687	1
USP28	6q-Del	0.687	1
USP28	Amp_1p31.3	0.687	1
USP28	Amp_17q25.1	0.687	1
Amp_1q44	Del_14q32.31	0.687	1
4p-Del	6q-Del	0.689	1
4p-Del	Amp_9p24.1	0.689	1
4p-Del	Amp_17q25.1	0.689	1
HLA-A	Amp_19q13.13	0.69	1
NHS	3q-Amp	0.69	1
Amp_3q28	Del_15q21.1	0.69	1
Amp_15q26.1	Del_11q23.3	0.69	1
Amp_19q13.13	Del_22q13.32	0.69	1
Amp_Xq28	Del_10q23.31	0.69	1
Del_2q22.1	Del_10q23.31	0.69	1
3q-Del	Del_7q34	0.691	1
Amp_9p24.1	Del_7q34	0.691	1
C3orf70	PIK3CA	0.692	1
PIK3CA	BAP1	0.692	1
PIK3CA	C12orf43	0.692	1
3p-Del	8p-Del	0.692	1
3p-Del	Amp_11q22.1	0.692	1
4p-Del	Xp-Del	0.692	1
8p-Del	Del_6q26	0.692	1
Amp_11q22.1	Del_4q35.2	0.692	1
FBXW7	1q-Amp	0.694	1
HLA-A	5p-Amp	0.695	1
NFE2L2	Del_6q26	0.695	1
NFE2L2	Del_13q12.11	0.695	1
PTEN	Del_8p23.3	0.695	1
NHS	3p-Del	0.695	1
NHS	Del_4q35.2	0.695	1
20q-Amp	Amp_8q24.21	0.695	1
20q-Amp	Del_1p36.23	0.695	1
3q-Amp	Del_2q37.1	0.695	1
5p-Amp	Del_2q22.1	0.695	1
11q-Del	Amp_6p21.33	0.695	1
11q-Del	Amp_13q34	0.695	1
11q-Del	Amp_Xq28	0.695	1
Amp_17q12	Del_4q35.2	0.695	1
Amp_20q11.21	Del_17p12	0.695	1
Del_1p36.23	Del_13q12.11	0.695	1
NFE2L2	Del_2q37.1	0.696	1
Del_1p36.23	Del_2q37.1	0.696	1
ANKRD12	KRAS	0.697	1
ANKRD12	Amp_2q33.1	0.697	1
ANKRD12	Amp_11q13.3	0.697	1
ERBB3	LIN9	0.697	1
ERBB3	Amp_11p12	0.697	1
KRAS	ZNF578	0.697	1
KRAS	IDS	0.697	1
KRAS	SMAD4	0.697	1
KRAS	Amp_11p12	0.697	1
MUC4	LIN9	0.697	1
MUC4	SMAD4	0.697	1
MUC4	Amp_11p12	0.697	1
ZNF578	Amp_2q33.1	0.697	1
ZNF578	Amp_11q13.3	0.697	1
FAT2	Amp_11p12	0.697	1
IDS	MED1	0.697	1
IDS	Amp_11q13.3	0.697	1
LIN9	Amp_2q33.1	0.697	1
MED1	Amp_11p12	0.697	1
SMAD4	Amp_2q33.1	0.697	1
1q-Amp	Del_1p13.2	0.697	1
1q-Amp	Del_Xp11.3	0.697	1
17p-Del	Del_1p13.2	0.697	1
Amp_11p12	Amp_11q13.3	0.697	1
ARID1A	Amp_13q34	0.698	1
ARID1A	Del_22q13.32	0.698	1
ERBB2	Del_4q21.3	0.698	1
ERBB2	Del_16q23.1	0.698	1
ZNF750	Del_16q23.1	0.698	1
Amp_13q34	Del_14q32.31	0.698	1
Amp_15q26.1	Amp_Xq28	0.698	1
Amp_15q26.1	Del_2q22.1	0.698	1
Del_14q32.31	Del_22q13.32	0.698	1
ERBB3	4q-Del	0.7	1
ERBB3	Del_6p24.2	0.7	1
HLA-B	Del_4q22.1	0.7	1
KRAS	4q-Del	0.7	1
KRAS	Del_6p24.2	0.7	1
RB1	3q-Amp	0.7	1
FAT2	4q-Del	0.7	1
FAT2	Del_6p24.2	0.7	1
MED1	Del_6p24.2	0.7	1
3q-Amp	Del_19q13.33	0.7	1
4p-Del	Del_8p23.1	0.7	1
4q-Del	Amp_11q13.3	0.7	1
Amp_2q33.1	Del_6p24.2	0.7	1
Amp_11q13.3	Del_4q22.1	0.7	1
Amp_11q13.3	Del_6p24.2	0.7	1
Amp_17q25.1	Del_3p14.2	0.7	1
MAPK1	Amp_20q11.21	0.701	1
C12orf43	Amp_5p15.33	0.701	1
RAB35	Amp_5p15.33	0.701	1
20q-Amp	Del_Xq21.33	0.701	1
3p-Del	Xp-Del	0.701	1
Xp-Del	Del_6q26	0.701	1
Amp_11q22.1	Del_20p12.1	0.701	1
Amp_20q11.21	Del_19q13.33	0.701	1
Del_4q35.2	Del_Xq21.33	0.701	1
Del_6q26	Del_Xq21.33	0.701	1
Del_13q12.11	Del_Xq21.33	0.701	1
EP300	Amp_1q21.3	0.702	1
C3orf70	1p-Amp	0.703	1
C3orf70	Del_20p12.1	0.703	1
BAP1	1p-Amp	0.703	1
BAP1	Del_15q21.1	0.703	1
BAP1	Del_20p12.1	0.703	1
C12orf43	Del_15q21.1	0.703	1
RAB35	Del_15q21.1	0.703	1
RAB35	Del_20p12.1	0.703	1
USP28	1p-Amp	0.703	1
CASP8	8p-Del	0.704	1
RB1	Del_5q35.2	0.704	1
11p-Del	Amp_1q44	0.704	1
17p-Del	Amp_20q11.21	0.704	1
22q-Del	8p-Del	0.704	1
3q-Del	Del_16q11.2	0.704	1
3q-Del	Del_16q23.1	0.704	1
8p-Del	Del_19q13.33	0.704	1
Del_5q35.2	Del_19q13.33	0.704	1
MTOR	Amp_21q22.13	0.705	1
TRIM9	Amp_21q22.13	0.705	1
Amp_3q26.31	Del_15q21.1	0.705	1
MUC4	Del_10q23.31	0.706	1
Amp_13q22.1	Del_17p12	0.706	1
Amp_16p13.13	Del_17p12	0.706	1
Amp_20q11.21	Del_3p14.2	0.706	1
5p-Amp	Del_17p12	0.708	1
8p-Del	Amp_11q22.1	0.708	1
8p-Del	Del_5q35.2	0.708	1
Del_11q25	Del_15q21.1	0.708	1
CASP8	19p-Del	0.709	1
CASP8	Del_1p13.2	0.709	1
CASP8	Del_Xp11.3	0.709	1
MAPK1	SEMA4B	0.709	1
MAPK1	19p-Del	0.709	1
MAPK1	Del_Xp11.3	0.709	1
PTPRC	SEMA4B	0.709	1
PTPRC	Del_1p13.2	0.709	1
PTPRC	Del_Xp11.3	0.709	1
RB1	19p-Del	0.709	1
RB1	Del_1p13.2	0.709	1
RB1	Del_Xp11.3	0.709	1
TP53	19p-Del	0.709	1
TP53	Del_1p13.2	0.709	1
TP53	Del_Xp11.3	0.709	1
SEMA4B	Del_19q13.33	0.709	1
19p-Del	22q-Del	0.709	1
19p-Del	Del_19q13.33	0.709	1
22q-Del	Del_Xp11.3	0.709	1
Del_1p13.2	Del_19q13.33	0.709	1
ERBB3	Del_13q14.2	0.71	1
HLA-B	Del_8p23.1	0.71	1
KRAS	Del_13q14.2	0.71	1
NFE2L2	8q-Amp	0.71	1
NFE2L2	6q-Del	0.71	1
NFE2L2	Amp_1p31.3	0.71	1
NFE2L2	Amp_17q25.1	0.71	1
MED1	Del_13q14.2	0.71	1
NHS	8q-Amp	0.71	1
NHS	Amp_17q25.1	0.71	1
1p-Amp	Del_8p23.1	0.71	1
1q-Amp	Xp-Del	0.71	1
1q-Amp	Del_Xq21.33	0.71	1
8q-Amp	Amp_17q12	0.71	1
8q-Amp	Del_1p36.23	0.71	1
6q-Del	Amp_17q12	0.71	1
Amp_2q33.1	Del_13q14.2	0.71	1
Del_1p36.23	Del_17q25.3	0.71	1
Del_13q14.2	Del_20p12.1	0.71	1
KRAS	Del_11q23.3	0.711	1
20q-Amp	6q-Del	0.711	1
6q-Del	Del_4q35.2	0.711	1
Amp_2q33.1	Del_11q23.3	0.711	1
Amp_5p15.33	Del_1p13.2	0.711	1
Amp_9p24.1	Del_6q26	0.711	1
Amp_9p24.1	Del_13q12.11	0.711	1
Amp_17q25.1	Del_13q12.11	0.711	1
20p-Amp	Del_11p15.1	0.712	1
19p-Del	Del_11p15.1	0.712	1
Del_11p15.1	Del_Xp11.3	0.712	1
FBXW7	Amp_2p24.3	0.713	1
FBXW7	Del_18q21.2	0.713	1
HLA-A	20p-Amp	0.713	1
20p-Amp	Amp_13q34	0.713	1
20p-Amp	Amp_Xq28	0.713	1
8q-Amp	Amp_20q11.21	0.713	1
6q-Del	Amp_20q11.21	0.713	1
Amp_3q28	Del_3p14.2	0.713	1
Amp_6p21.33	Del_5q12.1	0.713	1
Amp_13q22.1	Del_18q21.2	0.713	1
Amp_Xq28	Del_5q12.1	0.713	1
Del_5q12.1	Del_22q13.32	0.713	1
Del_10q23.31	Del_16q11.2	0.713	1
NFE2L2	1q-Amp	0.714	1
CASP8	Amp_8q24.21	0.715	1
ZNF750	5p-Amp	0.715	1
ZNF750	11q-Del	0.715	1
ZNF750	Del_8p23.3	0.715	1
Amp_1q44	Del_2q37.1	0.715	1
Amp_8q24.21	Del_19q13.33	0.715	1
EP300	3q-Del	0.716	1
MTOR	Del_2q37.1	0.716	1
TRIM9	Del_2q37.1	0.716	1
3q-Del	Del_18q21.2	0.716	1
Xp-Del	Amp_3q28	0.716	1
Amp_3q28	Del_Xq21.33	0.716	1
Del_4q21.3	Del_8p23.1	0.716	1
20p-Amp	5p-Amp	0.717	1
8q-Amp	Del_4q21.3	0.718	1
8q-Amp	Del_16q11.2	0.718	1
Amp_3q28	Del_Xp11.3	0.718	1
Amp_9p24.1	Del_16q23.1	0.718	1
Amp_17q25.1	Del_16q23.1	0.718	1
Del_16q11.2	Del_17q25.3	0.718	1
C3orf70	HLA-A	0.719	1
C3orf70	Amp_13q34	0.719	1
C3orf70	Del_2q22.1	0.719	1
C3orf70	Del_22q13.32	0.719	1
HLA-A	BAP1	0.719	1
MTOR	Del_10q23.31	0.719	1
PTEN	C12orf43	0.719	1
BAP1	Amp_6p21.33	0.719	1
BAP1	Amp_13q34	0.719	1
BAP1	Amp_Xq28	0.719	1
BAP1	Del_22q13.32	0.719	1
C12orf43	Amp_6p21.33	0.719	1
C12orf43	Amp_Xq28	0.719	1
C12orf43	Del_2q22.1	0.719	1
C12orf43	Del_22q13.32	0.719	1
RAB35	Amp_6p21.33	0.719	1
RAB35	Amp_13q34	0.719	1
RAB35	Amp_Xq28	0.719	1
RAB35	Del_22q13.32	0.719	1
USP28	Amp_Xq28	0.719	1
USP28	Del_2q22.1	0.719	1
Xp-Del	Del_11p15.1	0.719	1
NFE2L2	STK11	0.72	1
STK11	Amp_17q12	0.72	1
STK11	Del_1p36.23	0.72	1
NHS	TCTE1	0.72	1
SMAD4	3q-Amp	0.72	1
TCTE1	Amp_17q12	0.72	1
TCTE1	Del_1p36.23	0.72	1
ERBB2	SMAD4	0.721	1
ERBB2	Amp_11p12	0.721	1
IDS	ZNF750	0.721	1
LIN9	ZNF750	0.721	1
ZNF750	Amp_11p12	0.721	1
PIK3CA	Del_8p23.1	0.722	1
Xp-Del	Amp_3q26.31	0.722	1
Amp_3q26.31	Del_Xq21.33	0.722	1
ANKRD12	Del_13q14.2	0.723	1
CASP8	Del_7q34	0.723	1
ERBB3	10q-Del	0.723	1
ERBB3	13q-Del	0.723	1
ERBB3	Amp_16p13.13	0.723	1
FBXW7	FAT2	0.723	1
HLA-B	13q-Del	0.723	1
HLA-B	18q-Del	0.723	1
KRAS	13q-Del	0.723	1
MAPK1	Del_7q34	0.723	1
PTPRC	Del_7q34	0.723	1
RB1	Del_7q34	0.723	1
ZNF578	Del_8p23.1	0.723	1
FAT2	10q-Del	0.723	1
FAT2	18q-Del	0.723	1
FAT2	Amp_13q22.1	0.723	1
FAT2	Amp_16p13.13	0.723	1
LIN9	Del_8p23.1	0.723	1
10q-Del	Amp_11q13.3	0.723	1
Amp_1q44	Del_6q26	0.723	1
Amp_1q44	Del_13q12.11	0.723	1
Amp_2q33.1	Amp_13q22.1	0.723	1
Amp_2q33.1	Amp_16p13.13	0.723	1
Amp_3q28	Del_16q11.2	0.723	1
Amp_11p12	Del_8p23.1	0.723	1
Amp_11p12	Del_13q14.2	0.723	1
Amp_11q13.3	Amp_13q22.1	0.723	1
Amp_11q13.3	Amp_16p13.13	0.723	1
3q-Del	Del_11q25	0.725	1
5p-Amp	4q-Del	0.726	1
5p-Amp	Del_6p24.2	0.726	1
11q-Del	Del_6p24.2	0.726	1
4q-Del	Del_8p23.3	0.726	1
Del_7q34	Del_20p12.1	0.726	1
ERBB3	4p-Del	0.727	1
4p-Del	Amp_2q33.1	0.727	1
Amp_7p11.2	Del_14q32.31	0.727	1
Amp_3q26.31	Del_1p13.2	0.728	1
Amp_3q26.31	Del_Xp11.3	0.728	1
Del_6q26	Del_7q34	0.728	1
ARID1A	Amp_19q13.13	0.729	1
17p-Del	Amp_5p15.33	0.729	1
3q-Del	Del_6p24.2	0.729	1
Del_10q23.31	Del_14q32.31	0.729	1
CASP8	Del_17p12	0.73	1
TCTE1	Amp_1q44	0.73	1
TCTE1	Del_17p12	0.73	1
Del_17p12	Del_19q13.33	0.73	1
3q-Amp	Del_11p15.1	0.731	1
3p-Del	Del_13q14.2	0.732	1
Del_4q35.2	Del_8p23.1	0.732	1
Del_4q35.2	Del_13q14.2	0.732	1
Del_6q26	Del_13q14.2	0.732	1
Del_8p23.1	Del_13q12.11	0.732	1
NHS	Del_11p15.1	0.733	1
1q-Amp	Amp_9p24.1	0.733	1
17p-Del	6q-Del	0.733	1
17p-Del	Amp_17q25.1	0.733	1
Amp_17q12	Del_11p15.1	0.733	1
Del_1p36.23	Del_11p15.1	0.733	1
MTOR	Del_5q12.1	0.735	1
NFE2L2	1p-Amp	0.735	1
NFE2L2	Del_15q21.1	0.735	1
TRIM9	20p-Amp	0.735	1
1p-Amp	Amp_17q12	0.735	1
Amp_17q12	Del_15q21.1	0.735	1
Del_1p36.23	Del_15q21.1	0.735	1
Del_1p36.23	Del_20p12.1	0.735	1
ARID1A	C3orf70	0.736	1
ARID1A	BAP1	0.736	1
C3orf70	Amp_7p11.2	0.736	1
C3orf70	Amp_15q26.1	0.736	1
BAP1	Amp_15q26.1	0.736	1
BAP1	Del_14q32.31	0.736	1
C12orf43	Amp_7p11.2	0.736	1
C12orf43	Amp_15q26.1	0.736	1
C12orf43	Del_14q32.31	0.736	1
IDS	4p-Del	0.736	1
LIN9	4p-Del	0.736	1
RAB35	Amp_7p11.2	0.736	1
RAB35	Amp_15q26.1	0.736	1
RAB35	Del_14q32.31	0.736	1
USP28	Amp_7p11.2	0.736	1
11p-Del	Amp_19q13.13	0.736	1
4p-Del	Amp_11p12	0.736	1
11p-Del	Xp-Del	0.737	1
11p-Del	Del_Xq21.33	0.737	1
8p-Del	Amp_13q34	0.737	1
8p-Del	Del_2q22.1	0.737	1
Amp_6p21.33	Del_5q35.2	0.737	1
Amp_11q22.1	Amp_13q34	0.737	1
Del_2q22.1	Del_5q35.2	0.737	1
Del_5q35.2	Del_22q13.32	0.737	1
MTOR	SEMA4B	0.738	1
MTOR	19p-Del	0.738	1
MTOR	Del_1p13.2	0.738	1
MTOR	Del_Xp11.3	0.738	1
SEMA4B	TRIM9	0.738	1
SEMA4B	Amp_21q22.13	0.738	1
TRIM9	19p-Del	0.738	1
TRIM9	Del_Xp11.3	0.738	1
Amp_21q22.13	Del_1p13.2	0.738	1
ERBB2	Del_6p24.2	0.739	1
HLA-A	Del_2q37.1	0.739	1
ZNF750	Del_6p24.2	0.739	1
3q-Del	Del_11q23.3	0.74	1
Amp_3q26.31	Del_16q11.2	0.74	1
CASP8	Del_4q21.3	0.741	1
CASP8	Del_16q23.1	0.741	1
ERBB3	STK11	0.741	1
FBXW7	Del_4q22.1	0.741	1
FBXW7	Del_6p24.2	0.741	1
HLA-B	STK11	0.741	1
KRAS	TCTE1	0.741	1
MAPK1	Del_4q21.3	0.741	1
MAPK1	Del_16q23.1	0.741	1
PTPRC	Del_4q21.3	0.741	1
RB1	Del_16q11.2	0.741	1
RB1	Del_16q23.1	0.741	1
STK11	FAT2	0.741	1
STK11	MED1	0.741	1
STK11	Amp_2q33.1	0.741	1
STK11	Amp_11q13.3	0.741	1
TP53	Del_4q21.3	0.741	1
TCTE1	Amp_2q33.1	0.741	1
5p-Amp	Del_8p23.1	0.741	1
18q-Del	Del_6p24.2	0.741	1
22q-Del	Del_4q21.3	0.741	1
Amp_3q28	Amp_17q12	0.741	1
Amp_20q11.21	Del_11p15.1	0.741	1
Amp_21q22.13	Del_11q23.3	0.741	1
Del_16q11.2	Del_19q13.33	0.741	1
3q-Amp	Del_17q25.3	0.742	1
10q-Del	3q-Del	0.742	1
11p-Del	19p-Del	0.742	1
11q-Del	Amp_15q26.1	0.742	1
11q-Del	Del_14q32.31	0.742	1
13q-Del	3q-Del	0.742	1
18q-Del	3q-Del	0.742	1
3q-Del	Amp_13q22.1	0.742	1
3q-Del	Amp_16p13.13	0.742	1
Amp_1q21.3	Del_13q12.11	0.742	1
Amp_7p11.2	Del_8p23.3	0.742	1
4q-Del	Amp_3q28	0.743	1
Amp_3q28	Del_4q22.1	0.743	1
Amp_8q24.21	Del_4q21.3	0.743	1
Amp_8q24.21	Del_16q11.2	0.743	1
EP300	5q-Del	0.744	1
EP300	6q-Del	0.744	1
ERBB3	Del_6q26	0.744	1
ERBB3	Del_13q12.11	0.744	1
HLA-B	Del_13q12.11	0.744	1
KRAS	20q-Amp	0.744	1
KRAS	Del_6q26	0.744	1
KRAS	Del_13q12.11	0.744	1
FAT2	Del_4q35.2	0.744	1
FAT2	Del_13q12.11	0.744	1
MED1	20q-Amp	0.744	1
MED1	3p-Del	0.744	1
20q-Amp	Amp_11q13.3	0.744	1
8q-Amp	Del_18q21.2	0.744	1
3p-Del	Amp_2q33.1	0.744	1
Amp_1q21.3	Del_5q35.2	0.744	1
Amp_2p24.3	Amp_9p24.1	0.744	1
Amp_2q33.1	Del_4q35.2	0.744	1
Amp_2q33.1	Del_13q12.11	0.744	1
Amp_9p24.1	Del_18q21.2	0.744	1
Amp_11q13.3	Del_4q35.2	0.744	1
Del_17q25.3	Del_18q21.2	0.744	1
EP300	Del_10q23.31	0.745	1
ERBB3	5q-Del	0.745	1
ERBB3	6q-Del	0.745	1
ERBB3	Amp_17q25.1	0.745	1
ERBB3	Del_17q25.3	0.745	1
HLA-B	5q-Del	0.745	1
HLA-B	Amp_1p31.3	0.745	1
HLA-B	Amp_9p24.1	0.745	1
KRAS	6q-Del	0.745	1
FAT2	8q-Amp	0.745	1
FAT2	6q-Del	0.745	1
FAT2	Amp_17q25.1	0.745	1
MED1	8q-Amp	0.745	1
MED1	5q-Del	0.745	1
MED1	Amp_1p31.3	0.745	1
MED1	Amp_17q25.1	0.745	1
MED1	Del_17q25.3	0.745	1
6q-Del	Amp_11q13.3	0.745	1
Amp_1q21.3	Del_17p12	0.745	1
Amp_2q33.1	Del_17q25.3	0.745	1
Amp_11q13.3	Amp_17q25.1	0.745	1
Amp_11q13.3	Del_17q25.3	0.745	1
ANKRD12	MAPK1	0.746	1
ANKRD12	TP53	0.746	1
ANKRD12	22q-Del	0.746	1
ANKRD12	Del_19q13.33	0.746	1
CASP8	ZNF578	0.746	1
CASP8	IDS	0.746	1
CASP8	LIN9	0.746	1
CASP8	SMAD4	0.746	1
CASP8	Amp_11p12	0.746	1
MAPK1	ZNF578	0.746	1
MAPK1	IDS	0.746	1
MAPK1	Amp_11p12	0.746	1
PTPRC	ZNF578	0.746	1
PTPRC	IDS	0.746	1
PTPRC	LIN9	0.746	1
PTPRC	Amp_11p12	0.746	1
RB1	IDS	0.746	1
RB1	LIN9	0.746	1
RB1	Amp_11p12	0.746	1
TP53	Amp_11p12	0.746	1
ZNF578	22q-Del	0.746	1
ZNF578	Del_19q13.33	0.746	1
IDS	22q-Del	0.746	1
IDS	Del_19q13.33	0.746	1
LIN9	22q-Del	0.746	1
LIN9	Del_19q13.33	0.746	1
SMAD4	Del_19q13.33	0.746	1
22q-Del	Amp_11p12	0.746	1
Amp_5p15.33	Del_13q14.2	0.747	1
Del_3p14.2	Del_8p23.1	0.747	1
ANKRD12	3p-Del	0.748	1
ANKRD12	Del_13q12.11	0.748	1
MUC4	4q-Del	0.748	1
ZNF578	20q-Amp	0.748	1
ZNF578	3p-Del	0.748	1
ZNF578	Del_6q26	0.748	1
IDS	20q-Amp	0.748	1
IDS	Del_4q35.2	0.748	1
IDS	Del_13q12.11	0.748	1
SMAD4	20q-Amp	0.748	1
SMAD4	Del_6q26	0.748	1
SMAD4	Del_13q12.11	0.748	1
20q-Amp	Amp_11p12	0.748	1
Amp_1q21.3	Del_6p24.2	0.748	1
Amp_11p12	Del_6q26	0.748	1
3q-Amp	Amp_7p11.2	0.75	1
Del_4q21.3	Del_15q21.1	0.75	1
20p-Amp	Amp_7p11.2	0.751	1
20p-Amp	Amp_15q26.1	0.751	1
20p-Amp	Del_14q32.31	0.751	1
20q-Amp	Del_15q21.1	0.751	1
20q-Amp	Del_20p12.1	0.751	1
3p-Del	Del_20p12.1	0.751	1
Amp_7p11.2	Del_5q12.1	0.751	1
Amp_15q26.1	Del_5q12.1	0.751	1
Amp_16p13.13	Del_11q25	0.751	1
Del_6q26	Del_15q21.1	0.751	1
Del_13q12.11	Del_20p12.1	0.751	1
MTOR	8p-Del	0.752	1
MTOR	Del_5q35.2	0.752	1
PIK3CA	Del_6p24.2	0.752	1
8p-Del	Amp_21q22.13	0.752	1
PTEN	Del_8p23.1	0.753	1
Amp_3q26.31	Amp_17q12	0.753	1
Amp_Xq28	Del_13q14.2	0.753	1
Del_5q12.1	Del_11q23.3	0.753	1
Amp_8q24.21	Amp_19q13.13	0.754	1
Del_5q35.2	Del_8p23.3	0.754	1
8q-Amp	3q-Del	0.755	1
3q-Del	6q-Del	0.755	1
3q-Del	Amp_1p31.3	0.755	1
3q-Del	Amp_9p24.1	0.755	1
3q-Del	Del_17q25.3	0.755	1
Xp-Del	Amp_19q13.13	0.755	1
Xp-Del	Del_10q23.31	0.755	1
Amp_17q25.1	Del_11p15.1	0.755	1
Amp_19q13.13	Del_Xq21.33	0.755	1
Del_3p14.2	Del_15q21.1	0.755	1
HLA-A	Amp_1q21.3	0.756	1
FAT2	Del_2q37.1	0.757	1
MED1	Del_2q37.1	0.757	1
1q-Amp	Del_17p12	0.757	1
Amp_11q13.3	Del_2q37.1	0.757	1
Amp_6p21.33	Del_7q34	0.759	1
Amp_20q11.21	Del_15q21.1	0.759	1
Amp_20q11.21	Del_20p12.1	0.759	1
Amp_Xq28	Del_7q34	0.759	1
Del_2q22.1	Del_7q34	0.759	1
EP300	MAPK1	0.76	1
ERBB2	FBXW7	0.76	1
ERBB2	18q-Del	0.76	1
ERBB2	Amp_13q22.1	0.76	1
FBXW7	ZNF750	0.76	1
MAPK1	Amp_2p24.3	0.76	1
MUC4	Amp_15q26.1	0.76	1
MUC4	Del_14q32.31	0.76	1
NFE2L2	Del_2q22.1	0.76	1
PTEN	NHS	0.76	1
PTEN	Del_1p36.23	0.76	1
PTPRC	Amp_2p24.3	0.76	1
TP53	Del_18q21.2	0.76	1
NHS	Amp_6p21.33	0.76	1
NHS	Del_2q22.1	0.76	1
NHS	Del_22q13.32	0.76	1
ZNF750	13q-Del	0.76	1
ZNF750	Amp_16p13.13	0.76	1
22q-Del	Amp_2p24.3	0.76	1
Amp_13q34	Amp_17q12	0.76	1
Del_1p36.23	Del_22q13.32	0.76	1
ANKRD12	1q-Amp	0.761	1
ANKRD12	17p-Del	0.761	1
HLA-B	1q-Amp	0.761	1
HLA-B	17p-Del	0.761	1
KRAS	17p-Del	0.761	1
ZNF578	17p-Del	0.761	1
FAT2	1q-Amp	0.761	1
IDS	17p-Del	0.761	1
SMAD4	1q-Amp	0.761	1
ZNF750	Del_8p23.1	0.761	1
1q-Amp	Amp_11p12	0.761	1
1q-Amp	Amp_11q13.3	0.761	1
ERBB2	STK11	0.762	1
ERBB2	TCTE1	0.762	1
TCTE1	Del_8p23.3	0.762	1
MED1	3q-Amp	0.763	1
3q-Amp	Amp_2q33.1	0.763	1
3q-Amp	Amp_11q13.3	0.763	1
11p-Del	13q-Del	0.763	1
11p-Del	Amp_13q22.1	0.763	1
C3orf70	Del_2q37.1	0.764	1
BAP1	Del_2q37.1	0.764	1
RAB35	Del_2q37.1	0.764	1
20p-Amp	Xp-Del	0.764	1
20p-Amp	Del_Xq21.33	0.764	1
Xp-Del	Del_5q12.1	0.764	1
Amp_3q28	Del_13q14.2	0.764	1
Amp_3q28	Del_17q25.3	0.764	1
SEMA4B	19p-Del	0.767	1
5p-Amp	Amp_16p13.13	0.767	1
11q-Del	18q-Del	0.767	1
19p-Del	Del_Xp11.3	0.767	1
8p-Del	Del_16q23.1	0.767	1
Del_1p13.2	Del_Xp11.3	0.767	1
ERBB3	Del_20p12.1	0.768	1
HLA-B	1p-Amp	0.768	1
KRAS	Del_15q21.1	0.768	1
FAT2	Del_20p12.1	0.768	1
MED1	1p-Amp	0.768	1
MED1	Del_15q21.1	0.768	1
1p-Amp	3q-Del	0.768	1
1p-Amp	Amp_2q33.1	0.768	1
18q-Del	Amp_13q22.1	0.768	1
3q-Del	Del_15q21.1	0.768	1
3q-Del	Del_20p12.1	0.768	1
Amp_2q33.1	Del_20p12.1	0.768	1
Amp_11q13.3	Del_15q21.1	0.768	1
MTOR	Del_7q34	0.769	1
MUC4	Del_13q14.2	0.769	1
NHS	11p-Del	0.769	1
TRIM9	Del_7q34	0.769	1
11p-Del	Del_1p36.23	0.769	1
Amp_20q11.21	Del_5q12.1	0.769	1
C3orf70	NFE2L2	0.77	1
C3orf70	Del_1p36.23	0.77	1
NFE2L2	BAP1	0.77	1
NFE2L2	RAB35	0.77	1
BAP1	NHS	0.77	1
BAP1	Amp_17q12	0.77	1
BAP1	Del_1p36.23	0.77	1
C12orf43	NHS	0.77	1
C12orf43	Amp_17q12	0.77	1
C12orf43	Del_1p36.23	0.77	1
NHS	RAB35	0.77	1
RAB35	Amp_17q12	0.77	1
RAB35	Del_1p36.23	0.77	1
TCTE1	Amp_3q28	0.77	1
USP28	Del_1p36.23	0.77	1
4q-Del	6q-Del	0.77	1
4q-Del	Amp_9p24.1	0.77	1
Amp_9p24.1	Del_4q22.1	0.77	1
Del_4q22.1	Del_17q25.3	0.77	1
Del_6p24.2	Del_17q25.3	0.77	1
ANKRD12	MTOR	0.771	1
ANKRD12	TRIM9	0.771	1
ANKRD12	Amp_21q22.13	0.771	1
HLA-B	Amp_1q21.3	0.771	1
MTOR	LIN9	0.771	1
MTOR	SMAD4	0.771	1
ZNF578	Amp_21q22.13	0.771	1
IDS	TRIM9	0.771	1
IDS	Amp_21q22.13	0.771	1
LIN9	TRIM9	0.771	1
LIN9	Amp_21q22.13	0.771	1
SEMA4B	Amp_19q13.13	0.771	1
SEMA4B	Del_10q23.31	0.771	1
SMAD4	Amp_21q22.13	0.771	1
TRIM9	Amp_11p12	0.771	1
1q-Amp	11p-Del	0.771	1
1q-Amp	Del_15q21.1	0.771	1
Amp_1q21.3	Amp_2q33.1	0.771	1
Amp_1q21.3	Amp_11q13.3	0.771	1
Amp_19q13.13	Del_Xp11.3	0.771	1
Del_1p13.2	Del_10q23.31	0.771	1
C3orf70	Amp_1q21.3	0.772	1
CASP8	11q-Del	0.772	1
PTPRC	5p-Amp	0.772	1
PTPRC	Del_8p23.3	0.772	1
RB1	5p-Amp	0.772	1
TP53	5p-Amp	0.772	1
TP53	11q-Del	0.772	1
TP53	Del_8p23.3	0.772	1
USP28	Amp_1q21.3	0.772	1
4p-Del	Del_2q22.1	0.772	1
8p-Del	Del_14q32.31	0.772	1
Amp_7p11.2	Del_5q35.2	0.772	1
Del_6q26	Del_11q25	0.772	1
8p-Del	Xp-Del	0.773	1
Xp-Del	Amp_11q22.1	0.773	1
Xp-Del	Del_5q35.2	0.773	1
ANKRD12	Del_11p15.1	0.774	1
STK11	Del_11q25	0.774	1
LIN9	Del_11p15.1	0.774	1
Amp_8q24.21	Amp_17q12	0.774	1
PTEN	Del_11q25	0.775	1
Amp_Xq28	Del_11q25	0.775	1
MUC4	Del_5q35.2	0.776	1
PIK3CA	Amp_19q13.13	0.776	1
Del_7q34	Del_11p15.1	0.776	1
ERBB3	Del_11p15.1	0.777	1
HLA-B	Del_11p15.1	0.777	1
Amp_2q33.1	Del_11p15.1	0.777	1
Amp_11q13.3	Del_11p15.1	0.777	1
Del_6p24.2	Del_10q23.31	0.777	1
TCTE1	Amp_3q26.31	0.778	1
8q-Amp	Amp_3q26.31	0.778	1
Amp_3q26.31	Amp_17q25.1	0.778	1
CASP8	Del_4q22.1	0.779	1
CASP8	Del_6p24.2	0.779	1
MAPK1	Del_6p24.2	0.779	1
PTPRC	Del_4q22.1	0.779	1
TP53	4q-Del	0.779	1
TP53	Del_6p24.2	0.779	1
22q-Del	Del_4q22.1	0.779	1
22q-Del	Del_6p24.2	0.779	1
ERBB2	6q-Del	0.78	1
ERBB2	Amp_1p31.3	0.78	1
ERBB2	Amp_17q25.1	0.78	1
ZNF750	Amp_17q25.1	0.78	1
PTEN	3q-Del	0.781	1
3q-Del	Amp_6p21.33	0.781	1
3q-Del	Amp_Xq28	0.781	1
3q-Del	Del_2q22.1	0.781	1
3q-Del	Del_22q13.32	0.781	1
HLA-A	Del_16q23.1	0.782	1
PTEN	Del_4q21.3	0.782	1
Amp_6p21.33	Del_4q21.3	0.782	1
Amp_6p21.33	Del_16q23.1	0.782	1
Amp_16p13.13	Del_11q23.3	0.782	1
Del_7q34	Del_Xq21.33	0.782	1
Del_16q11.2	Del_22q13.32	0.782	1
Del_16q23.1	Del_22q13.32	0.782	1
4p-Del	Amp_20q11.21	0.783	1
ARID1A	Amp_17q12	0.784	1
CASP8	PIK3CA	0.784	1
CASP8	STK11	0.784	1
MAPK1	STK11	0.784	1
MAPK1	TCTE1	0.784	1
NFE2L2	Amp_7p11.2	0.784	1
PTPRC	STK11	0.784	1
RB1	STK11	0.784	1
STK11	TP53	0.784	1
STK11	Del_19q13.33	0.784	1
NHS	Amp_7p11.2	0.784	1
NHS	Del_14q32.31	0.784	1
TCTE1	22q-Del	0.784	1
TCTE1	Del_19q13.33	0.784	1
TRIM9	3q-Amp	0.784	1
Amp_3q26.31	Del_13q14.2	0.784	1
Amp_7p11.2	Amp_17q12	0.784	1
Amp_7p11.2	Del_1p36.23	0.784	1
Amp_17q12	Del_14q32.31	0.784	1
SEMA4B	20p-Amp	0.785	1
SEMA4B	Del_5q12.1	0.785	1
TRIM9	Del_4q21.3	0.785	1
TRIM9	Del_16q11.2	0.785	1
20p-Amp	Del_1p13.2	0.785	1
17p-Del	Del_16q23.1	0.785	1
19p-Del	Del_5q12.1	0.785	1
Amp_21q22.13	Del_16q11.2	0.785	1
Del_1p13.2	Del_5q12.1	0.785	1
Del_2q37.1	Del_13q14.2	0.785	1
Del_5q12.1	Del_Xp11.3	0.785	1
MUC4	10q-Del	0.786	1
MUC4	Amp_13q22.1	0.786	1
Amp_8q24.21	Del_11q23.3	0.786	1
C3orf70	HLA-B	0.787	1
C3orf70	KRAS	0.787	1
C3orf70	FAT2	0.787	1
C3orf70	MED1	0.787	1
C3orf70	Amp_2q33.1	0.787	1
C3orf70	Amp_11q13.3	0.787	1
EP300	Del_11q25	0.787	1
ERBB3	BAP1	0.787	1
ERBB3	C12orf43	0.787	1
ERBB3	RAB35	0.787	1
ERBB3	USP28	0.787	1
HLA-B	BAP1	0.787	1
HLA-B	RAB35	0.787	1
KRAS	BAP1	0.787	1
KRAS	C12orf43	0.787	1
KRAS	RAB35	0.787	1
KRAS	USP28	0.787	1
BAP1	FAT2	0.787	1
BAP1	MED1	0.787	1
BAP1	Amp_2q33.1	0.787	1
BAP1	Amp_11q13.3	0.787	1
C12orf43	Amp_11q13.3	0.787	1
FAT2	RAB35	0.787	1
MED1	RAB35	0.787	1
RAB35	Amp_2q33.1	0.787	1
RAB35	Amp_11q13.3	0.787	1
USP28	Amp_2q33.1	0.787	1
Del_4q35.2	Del_6q26	0.787	1
ANKRD12	PIK3CA	0.788	1
PIK3CA	LIN9	0.788	1
PIK3CA	SMAD4	0.788	1
1q-Amp	4p-Del	0.788	1
20p-Amp	Del_13q14.2	0.788	1
NHS	Del_17p12	0.789	1
4q-Del	Del_8p23.1	0.789	1
Amp_1q44	Amp_17q12	0.789	1
Amp_1q44	Del_1p36.23	0.789	1
Amp_17q12	Del_17p12	0.789	1
Del_1p36.23	Del_17p12	0.789	1
Del_1p13.2	Del_2q37.1	0.789	1
Del_2q37.1	Del_Xp11.3	0.789	1
Del_6p24.2	Del_13q14.2	0.789	1
HLA-A	Del_6q26	0.79	1
PTEN	20q-Amp	0.79	1
PTEN	Del_13q12.11	0.79	1
STK11	Del_11q23.3	0.79	1
20q-Amp	Del_2q22.1	0.79	1
20q-Amp	Del_22q13.32	0.79	1
ERBB2	20q-Amp	0.791	1
ERBB2	Del_6q26	0.791	1
ERBB3	PTEN	0.791	1
ERBB3	Del_2q22.1	0.791	1
HLA-A	Amp_2q33.1	0.791	1
HLA-B	PTEN	0.791	1
HLA-B	Amp_Xq28	0.791	1
HLA-B	Del_2q22.1	0.791	1
HLA-B	Del_22q13.32	0.791	1
PTEN	FAT2	0.791	1
FAT2	Amp_13q34	0.791	1
FAT2	Del_2q22.1	0.791	1
MED1	Amp_6p21.33	0.791	1
MED1	Amp_Xq28	0.791	1
MED1	Del_2q22.1	0.791	1
TRIM9	Amp_1q44	0.791	1
11q-Del	Amp_20q11.21	0.791	1
Amp_2q33.1	Amp_13q34	0.791	1
Amp_2q33.1	Amp_Xq28	0.791	1
Amp_2q33.1	Del_2q22.1	0.791	1
Amp_2q33.1	Del_22q13.32	0.791	1
Amp_11q13.3	Amp_13q34	0.791	1
Amp_11q13.3	Amp_Xq28	0.791	1
Amp_11q13.3	Del_2q22.1	0.791	1
Amp_11q13.3	Del_22q13.32	0.791	1
Del_11p15.1	Del_15q21.1	0.791	1
FBXW7	Amp_1q21.3	0.792	1
Xp-Del	Del_4q21.3	0.792	1
Xp-Del	Del_16q11.2	0.792	1
Xp-Del	Del_16q23.1	0.792	1
Amp_7p11.2	Del_7q34	0.792	1
Del_4q21.3	Del_Xq21.33	0.792	1
Del_16q11.2	Del_Xq21.33	0.792	1
Del_16q23.1	Del_Xq21.33	0.792	1
EP300	Del_5q35.2	0.794	1
STK11	Del_13q14.2	0.794	1
TCTE1	Del_8p23.1	0.794	1
Amp_7p11.2	Del_8p23.1	0.794	1
ARID1A	3q-Del	0.795	1
EP300	Del_4q35.2	0.795	1
FBXW7	6q-Del	0.795	1
FBXW7	Amp_1p31.3	0.795	1
FBXW7	Amp_17q25.1	0.795	1
20q-Amp	Del_18q21.2	0.795	1
8q-Amp	10q-Del	0.795	1
8q-Amp	13q-Del	0.795	1
8q-Amp	18q-Del	0.795	1
10q-Del	6q-Del	0.795	1
13q-Del	Amp_17q25.1	0.795	1
18q-Del	Amp_9p24.1	0.795	1
18q-Del	Del_17q25.3	0.795	1
22q-Del	Amp_5p15.33	0.795	1
22q-Del	Del_3p14.2	0.795	1
3p-Del	Amp_2p24.3	0.795	1
3q-Del	Amp_7p11.2	0.795	1
3q-Del	Del_14q32.31	0.795	1
Amp_1p31.3	Amp_13q22.1	0.795	1
Amp_9p24.1	Amp_13q22.1	0.795	1
Amp_9p24.1	Amp_16p13.13	0.795	1
Amp_13q22.1	Del_17q25.3	0.795	1
Amp_16p13.13	Del_17q25.3	0.795	1
Amp_19q13.13	Del_3p14.2	0.795	1
Del_4q35.2	Del_18q21.2	0.795	1
Del_13q12.11	Del_18q21.2	0.795	1
3p-Del	Amp_3q26.31	0.796	1
Amp_3q26.31	Del_4q35.2	0.796	1
ANKRD12	19p-Del	0.797	1
ANKRD12	Amp_5p15.33	0.797	1
ANKRD12	Del_1p13.2	0.797	1
ANKRD12	Del_3p14.2	0.797	1
ANKRD12	Del_Xp11.3	0.797	1
CASP8	10q-Del	0.797	1
CASP8	Amp_13q22.1	0.797	1
CASP8	Amp_16p13.13	0.797	1
FBXW7	MAPK1	0.797	1
FBXW7	TP53	0.797	1
FBXW7	22q-Del	0.797	1
MAPK1	10q-Del	0.797	1
MAPK1	13q-Del	0.797	1
MAPK1	Amp_16p13.13	0.797	1
PTPRC	13q-Del	0.797	1
RB1	13q-Del	0.797	1
RB1	Amp_13q22.1	0.797	1
TP53	18q-Del	0.797	1
ZNF578	19p-Del	0.797	1
ZNF578	Del_1p13.2	0.797	1
ZNF578	Del_3p14.2	0.797	1
ZNF578	Del_Xp11.3	0.797	1
IDS	19p-Del	0.797	1
IDS	Amp_5p15.33	0.797	1
IDS	Del_Xp11.3	0.797	1
LIN9	19p-Del	0.797	1
LIN9	Amp_5p15.33	0.797	1
LIN9	Del_1p13.2	0.797	1
LIN9	Del_3p14.2	0.797	1
LIN9	Del_Xp11.3	0.797	1
SEMA4B	SMAD4	0.797	1
SEMA4B	Amp_11p12	0.797	1
SMAD4	19p-Del	0.797	1
SMAD4	Del_1p13.2	0.797	1
SMAD4	Del_Xp11.3	0.797	1
18q-Del	Del_19q13.33	0.797	1
19p-Del	Amp_11p12	0.797	1
22q-Del	Amp_16p13.13	0.797	1
Amp_1q21.3	Del_11q25	0.797	1
Amp_11p12	Del_1p13.2	0.797	1
Amp_16p13.13	Del_19q13.33	0.797	1
ANKRD12	11p-Del	0.798	1
LIN9	11p-Del	0.798	1
4q-Del	Del_20p12.1	0.798	1
20p-Amp	Del_6p24.2	0.799	1
19p-Del	Amp_1q21.3	0.799	1
Amp_1q21.3	Del_1p13.2	0.799	1
FBXW7	PIK3CA	0.8	1
PIK3CA	10q-Del	0.8	1
PIK3CA	Amp_16p13.13	0.8	1
NHS	Amp_5p15.33	0.8	1
NHS	Del_3p14.2	0.8	1
SEMA4B	Amp_11q22.1	0.8	1
20q-Amp	11q-Del	0.8	1
5p-Amp	Del_13q12.11	0.8	1
8p-Del	Del_Xp11.3	0.8	1
Amp_3q28	Del_2q37.1	0.8	1
Amp_5p15.33	Del_1p36.23	0.8	1
Del_1p13.2	Del_5q35.2	0.8	1
Del_5q35.2	Del_Xp11.3	0.8	1
Del_6q26	Del_8p23.3	0.8	1
EP300	MTOR	0.801	1
EP300	TRIM9	0.801	1
EP300	Xp-Del	0.801	1
EP300	Amp_1q44	0.801	1
EP300	Del_17p12	0.801	1
EP300	Del_Xq21.33	0.801	1
ERBB2	Del_20p12.1	0.801	1
Xp-Del	Amp_2p24.3	0.801	1
Amp_2p24.3	Del_17p12	0.801	1
Amp_21q22.13	Del_18q21.2	0.801	1
Del_18q21.2	Del_Xq21.33	0.801	1
Amp_Xq28	Del_11q23.3	0.802	1
Del_5q35.2	Del_11q23.3	0.802	1
ARID1A	Amp_1q21.3	0.804	1
EP300	Amp_6p21.33	0.804	1
NFE2L2	Del_10q23.31	0.804	1
PTEN	Amp_20q11.21	0.804	1
NHS	Del_11q25	0.804	1
Amp_2p24.3	Amp_13q34	0.804	1
Amp_13q34	Del_18q21.2	0.804	1
Amp_17q12	Amp_19q13.13	0.804	1
Amp_17q12	Del_10q23.31	0.804	1
Amp_17q12	Del_11q25	0.804	1
Amp_19q13.13	Del_13q12.11	0.804	1
Amp_20q11.21	Amp_Xq28	0.804	1
Amp_20q11.21	Del_22q13.32	0.804	1
C3orf70	ZNF750	0.805	1
ERBB2	BAP1	0.805	1
ERBB2	C12orf43	0.805	1
ERBB2	RAB35	0.805	1
BAP1	ZNF750	0.805	1
5p-Amp	8q-Amp	0.805	1
11q-Del	5q-Del	0.805	1
11q-Del	Amp_9p24.1	0.805	1
11q-Del	Amp_17q25.1	0.805	1
5q-Del	Del_8p23.3	0.805	1
6q-Del	Del_8p23.3	0.805	1
Amp_1p31.3	Del_8p23.3	0.805	1
Amp_9p24.1	Del_8p23.3	0.805	1
Amp_20q11.21	Del_5q35.2	0.805	1
ERBB2	1q-Amp	0.806	1
ERBB2	17p-Del	0.806	1
MTOR	STK11	0.806	1
MTOR	TCTE1	0.806	1
STK11	TRIM9	0.806	1
STK11	Amp_21q22.13	0.806	1
C12orf43	Amp_8q24.21	0.806	1
TCTE1	Amp_21q22.13	0.806	1
4p-Del	Amp_8q24.21	0.806	1
Amp_5p15.33	Amp_Xq28	0.807	1
HLA-A	1q-Amp	0.808	1
PIK3CA	Del_16q11.2	0.808	1
PTEN	17p-Del	0.808	1
1q-Amp	Amp_Xq28	0.808	1
17p-Del	Amp_13q34	0.808	1
17p-Del	Del_2q22.1	0.808	1
ERBB3	11p-Del	0.809	1
HLA-B	11p-Del	0.809	1
11p-Del	Amp_11q13.3	0.809	1
6q-Del	Del_11q25	0.809	1
Amp_3q26.31	Del_11p15.1	0.809	1
20p-Amp	4p-Del	0.81	1
3q-Amp	Del_8p23.3	0.81	1
4q-Del	Del_Xq21.33	0.81	1
Xp-Del	Del_6p24.2	0.81	1
Del_4q22.1	Del_Xq21.33	0.81	1
HLA-B	Amp_20q11.21	0.811	1
RB1	Del_13q14.2	0.811	1
TP53	Del_8p23.1	0.811	1
20q-Amp	Del_11q23.3	0.811	1
19p-Del	Del_11q25	0.811	1
4p-Del	Amp_7p11.2	0.811	1
Amp_2q33.1	Amp_20q11.21	0.811	1
Amp_11q13.3	Amp_20q11.21	0.811	1
Del_6q26	Del_11q23.3	0.811	1
Del_11q25	Del_Xp11.3	0.811	1
Del_13q14.2	Del_19q13.33	0.811	1
TRIM9	Amp_3q28	0.812	1
Amp_15q26.1	Del_16q23.1	0.812	1
Del_4q21.3	Del_14q32.31	0.812	1
ARID1A	MED1	0.813	1
ARID1A	Amp_11q13.3	0.813	1
ERBB3	Amp_15q26.1	0.813	1
HLA-B	Amp_15q26.1	0.813	1
FAT2	Amp_7p11.2	0.813	1
FAT2	Del_14q32.31	0.813	1
MED1	Amp_7p11.2	0.813	1
Amp_2q33.1	Amp_7p11.2	0.813	1
C3orf70	Amp_1q44	0.814	1
ERBB2	Del_2q37.1	0.814	1
STK11	3p-Del	0.814	1
STK11	Del_4q35.2	0.814	1
STK11	Del_13q12.11	0.814	1
BAP1	Del_17p12	0.814	1
C12orf43	Del_17p12	0.814	1
RAB35	Del_17p12	0.814	1
SEMA4B	Del_7q34	0.814	1
TCTE1	Del_4q35.2	0.814	1
USP28	Amp_1q44	0.814	1
CASP8	Amp_9p24.1	0.815	1
EP300	17p-Del	0.815	1
FBXW7	Del_3p14.2	0.815	1
MAPK1	Amp_17q25.1	0.815	1
MAPK1	Del_17q25.3	0.815	1
PTPRC	8q-Amp	0.815	1
PTPRC	Amp_1p31.3	0.815	1
PTPRC	Amp_9p24.1	0.815	1
RB1	Del_17q25.3	0.815	1
TP53	8q-Amp	0.815	1
TP53	6q-Del	0.815	1
TP53	Amp_9p24.1	0.815	1
TP53	Amp_17q25.1	0.815	1
TP53	Del_17q25.3	0.815	1
8q-Amp	Del_19q13.33	0.815	1
10q-Del	Del_3p14.2	0.815	1
17p-Del	Amp_2p24.3	0.815	1
17p-Del	Del_18q21.2	0.815	1
22q-Del	Amp_9p24.1	0.815	1
5q-Del	Del_19q13.33	0.815	1
Amp_1p31.3	Del_19q13.33	0.815	1
Amp_17q25.1	Del_19q13.33	0.815	1
Del_4q21.3	Del_16q11.2	0.816	1
Del_4q21.3	Del_16q23.1	0.816	1
TRIM9	Del_4q22.1	0.817	1
Amp_9p24.1	Del_2q37.1	0.817	1
8p-Del	Del_13q14.2	0.818	1
Amp_2p24.3	Del_7q34	0.818	1
Del_5q35.2	Del_8p23.1	0.818	1
8q-Amp	5q-Del	0.819	1
8q-Amp	6q-Del	0.819	1
8q-Amp	Amp_1p31.3	0.819	1
3q-Del	Amp_5p15.33	0.819	1
Amp_1p31.3	Amp_9p24.1	0.819	1
Amp_1p31.3	Del_17q25.3	0.819	1
FBXW7	1p-Amp	0.82	1
FBXW7	Xp-Del	0.82	1
FBXW7	Del_20p12.1	0.82	1
FBXW7	Del_Xq21.33	0.82	1
TRIM9	Amp_3q26.31	0.82	1
10q-Del	Xp-Del	0.82	1
13q-Del	Xp-Del	0.82	1
13q-Del	Del_Xq21.33	0.82	1
18q-Del	Del_Xq21.33	0.82	1
4q-Del	Amp_8q24.21	0.82	1
Xp-Del	Amp_16p13.13	0.82	1
Amp_13q22.1	Del_Xq21.33	0.82	1
ERBB2	HLA-A	0.821	1
ERBB2	PTEN	0.821	1
ERBB2	Del_22q13.32	0.821	1
NFE2L2	20p-Amp	0.821	1
NHS	20p-Amp	0.821	1
20p-Amp	Amp_17q12	0.821	1
4q-Del	8p-Del	0.821	1
8p-Del	Del_6p24.2	0.821	1
Del_1p36.23	Del_5q12.1	0.821	1
Del_8p23.1	Del_13q14.2	0.821	1
NFE2L2	3q-Del	0.822	1
NHS	3q-Del	0.822	1
5p-Amp	Del_16q23.1	0.822	1
10q-Del	Del_8p23.1	0.822	1
11p-Del	Amp_3q26.31	0.822	1
11q-Del	Del_16q23.1	0.822	1
3q-Del	Amp_17q12	0.822	1
3q-Del	Del_1p36.23	0.822	1
Amp_3q28	Amp_19q13.13	0.822	1
Amp_3q28	Del_10q23.31	0.822	1
Del_4q21.3	Del_8p23.3	0.822	1
Del_8p23.3	Del_16q23.1	0.822	1
ANKRD12	Amp_19q13.13	0.823	1
C3orf70	MAPK1	0.823	1
C3orf70	PTPRC	0.823	1
C3orf70	TP53	0.823	1
C3orf70	22q-Del	0.823	1
CASP8	BAP1	0.823	1
CASP8	RAB35	0.823	1
MAPK1	BAP1	0.823	1
MAPK1	C12orf43	0.823	1
MAPK1	RAB35	0.823	1
MAPK1	USP28	0.823	1
PTPRC	BAP1	0.823	1
PTPRC	C12orf43	0.823	1
PTPRC	RAB35	0.823	1
RB1	BAP1	0.823	1
TP53	BAP1	0.823	1
TP53	RAB35	0.823	1
ZNF578	Amp_19q13.13	0.823	1
BAP1	22q-Del	0.823	1
BAP1	Del_19q13.33	0.823	1
C12orf43	22q-Del	0.823	1
C12orf43	Del_19q13.33	0.823	1
RAB35	22q-Del	0.823	1
RAB35	Del_19q13.33	0.823	1
SMAD4	Amp_19q13.13	0.823	1
USP28	Del_19q13.33	0.823	1
Amp_8q24.21	Del_5q35.2	0.823	1
ANKRD12	ZNF578	0.824	1
ANKRD12	IDS	0.824	1
ANKRD12	LIN9	0.824	1
ANKRD12	SMAD4	0.824	1
ANKRD12	Amp_11p12	0.824	1
MUC4	20q-Amp	0.824	1
MUC4	Del_6q26	0.824	1
STK11	1q-Amp	0.824	1
IDS	SMAD4	0.824	1
IDS	Amp_11p12	0.824	1
LIN9	Amp_11p12	0.824	1
SMAD4	Amp_11p12	0.824	1
TCTE1	1q-Amp	0.824	1
TCTE1	17p-Del	0.824	1
Amp_5p15.33	Del_16q23.1	0.824	1
HLA-A	Del_6p24.2	0.825	1
HLA-A	Del_11p15.1	0.825	1
PTEN	4q-Del	0.825	1
PTEN	Del_4q22.1	0.825	1
10q-Del	Amp_3q28	0.825	1
13q-Del	Amp_3q28	0.825	1
Amp_6p21.33	Del_4q22.1	0.825	1
Amp_13q34	Del_4q22.1	0.825	1
Amp_13q34	Del_6p24.2	0.825	1
Amp_Xq28	Del_6p24.2	0.825	1
Del_6p24.2	Del_22q13.32	0.825	1
MTOR	Del_8p23.3	0.826	1
NHS	Del_11q23.3	0.826	1
20q-Amp	Del_6p24.2	0.826	1
11q-Del	Amp_21q22.13	0.826	1
4q-Del	Del_6q26	0.826	1
Amp_7p11.2	Del_4q35.2	0.826	1
Amp_7p11.2	Del_13q12.11	0.826	1
Del_4q35.2	Del_14q32.31	0.826	1
20p-Amp	10q-Del	0.827	1
20p-Amp	13q-Del	0.827	1
5p-Amp	17p-Del	0.827	1
11p-Del	Del_15q21.1	0.827	1
STK11	19p-Del	0.828	1
STK11	Del_Xp11.3	0.828	1
SEMA4B	TCTE1	0.828	1
TCTE1	19p-Del	0.828	1
TCTE1	Del_1p13.2	0.828	1
TCTE1	Del_Xp11.3	0.828	1
11p-Del	Amp_8q24.21	0.828	1
19p-Del	Del_4q21.3	0.828	1
19p-Del	Del_11q23.3	0.828	1
Del_1p13.2	Del_4q21.3	0.828	1
Del_1p13.2	Del_16q11.2	0.828	1
Del_1p13.2	Del_16q23.1	0.828	1
Del_16q11.2	Del_Xp11.3	0.828	1
Del_16q23.1	Del_Xp11.3	0.828	1
8q-Amp	Del_Xq21.33	0.829	1
5q-Del	Xp-Del	0.829	1
6q-Del	Xp-Del	0.829	1
6q-Del	Del_Xq21.33	0.829	1
Xp-Del	Amp_1p31.3	0.829	1
Xp-Del	Amp_9p24.1	0.829	1
Xp-Del	Amp_17q25.1	0.829	1
Xp-Del	Del_17q25.3	0.829	1
Amp_1p31.3	Del_Xq21.33	0.829	1
Amp_9p24.1	Del_Xq21.33	0.829	1
NHS	5p-Amp	0.831	1
20q-Amp	Del_5q12.1	0.831	1
Amp_17q12	Del_8p23.3	0.831	1
ARID1A	Amp_2p24.3	0.832	1
CASP8	1p-Amp	0.832	1
EP300	Amp_15q26.1	0.832	1
NFE2L2	Amp_17q12	0.832	1
PTPRC	1p-Amp	0.832	1
PTPRC	Del_20p12.1	0.832	1
NHS	Amp_17q12	0.832	1
1p-Amp	Del_19q13.33	0.832	1
8q-Amp	Amp_1q21.3	0.832	1
22q-Del	Del_20p12.1	0.832	1
Amp_7p11.2	Del_18q21.2	0.832	1
Amp_15q26.1	Del_18q21.2	0.832	1
Del_19q13.33	Del_20p12.1	0.832	1
FBXW7	MTOR	0.833	1
FBXW7	Amp_21q22.13	0.833	1
MTOR	Amp_16p13.13	0.833	1
TRIM9	13q-Del	0.833	1
TRIM9	Amp_13q22.1	0.833	1
18q-Del	Amp_21q22.13	0.833	1
Amp_13q34	Del_17p12	0.833	1
ANKRD12	20p-Amp	0.834	1
ANKRD12	Del_5q12.1	0.834	1
STK11	Del_11p15.1	0.834	1
ZNF578	Del_5q12.1	0.834	1
IDS	20p-Amp	0.834	1
LIN9	20p-Amp	0.834	1
SMAD4	20p-Amp	0.834	1
SMAD4	Del_5q12.1	0.834	1
20p-Amp	Amp_11p12	0.834	1
11q-Del	Amp_1q21.3	0.834	1
EP300	Del_11p15.1	0.835	1
HLA-B	Amp_1q44	0.835	1
FAT2	Del_17p12	0.835	1
5q-Del	Amp_19q13.13	0.835	1
5q-Del	Del_11q23.3	0.835	1
6q-Del	Del_10q23.31	0.835	1
6q-Del	Del_11q23.3	0.835	1
Amp_1q44	Amp_2q33.1	0.835	1
Amp_1q44	Amp_11q13.3	0.835	1
Amp_9p24.1	Del_10q23.31	0.835	1
Amp_19q13.13	Del_17q25.3	0.835	1
Del_11q25	Del_14q32.31	0.835	1
ERBB3	3q-Del	0.836	1
HLA-B	3q-Del	0.836	1
KRAS	3q-Del	0.836	1
PTPRC	Del_4q35.2	0.836	1
FAT2	3q-Del	0.836	1
MED1	3q-Del	0.836	1
20q-Amp	Del_19q13.33	0.836	1
3q-Del	Amp_11q13.3	0.836	1
Amp_3q26.31	Amp_19q13.13	0.836	1
Amp_3q26.31	Del_3p14.2	0.836	1
Amp_3q26.31	Del_10q23.31	0.836	1
Del_6p24.2	Del_17p12	0.836	1
MUC4	Amp_21q22.13	0.837	1
13q-Del	Amp_3q26.31	0.837	1
C12orf43	Del_8p23.3	0.838	1
NHS	Amp_11q22.1	0.838	1
RAB35	5p-Amp	0.838	1
RAB35	11q-Del	0.838	1
RAB35	Del_8p23.3	0.838	1
4p-Del	8p-Del	0.838	1
8p-Del	Amp_17q12	0.838	1
8p-Del	Del_1p36.23	0.838	1
Amp_11q22.1	Del_1p36.23	0.838	1
Del_1p36.23	Del_5q35.2	0.838	1
SEMA4B	Amp_8q24.21	0.839	1
1p-Amp	Xp-Del	0.839	1
1p-Amp	Del_Xq21.33	0.839	1
11q-Del	Amp_1q44	0.839	1
Xp-Del	Del_15q21.1	0.839	1
Amp_11q22.1	Amp_19q13.13	0.839	1
Amp_19q13.13	Del_5q35.2	0.839	1
Del_20p12.1	Del_Xq21.33	0.839	1
ARID1A	ERBB2	0.84	1
EP300	Del_16q23.1	0.84	1
ERBB2	Del_14q32.31	0.84	1
HLA-B	Del_10q23.31	0.84	1
ZNF750	Amp_15q26.1	0.84	1
ZNF750	Del_14q32.31	0.84	1
Amp_2p24.3	Del_16q23.1	0.84	1
Amp_11q13.3	Amp_19q13.13	0.84	1
Amp_11q13.3	Del_10q23.31	0.84	1
EP300	SEMA4B	0.841	1
EP300	Del_Xp11.3	0.841	1
PTPRC	Del_11q25	0.841	1
TP53	Del_11q25	0.841	1
SEMA4B	Amp_2p24.3	0.841	1
11q-Del	Del_15q21.1	0.841	1
Amp_2p24.3	Del_Xp11.3	0.841	1
Amp_11q22.1	Del_17p12	0.841	1
Del_18q21.2	Del_Xp11.3	0.841	1
ARID1A	1q-Amp	0.842	1
C3orf70	TRIM9	0.842	1
C3orf70	Amp_21q22.13	0.842	1
MTOR	C12orf43	0.842	1
MTOR	RAB35	0.842	1
MTOR	USP28	0.842	1
BAP1	TRIM9	0.842	1
BAP1	Amp_21q22.13	0.842	1
C12orf43	Amp_21q22.13	0.842	1
RAB35	TRIM9	0.842	1
RAB35	Amp_21q22.13	0.842	1
USP28	Amp_21q22.13	0.842	1
1p-Amp	Amp_9p24.1	0.842	1
1p-Amp	Del_17q25.3	0.842	1
1q-Amp	Amp_15q26.1	0.842	1
1q-Amp	Del_14q32.31	0.842	1
8q-Amp	Del_20p12.1	0.842	1
4p-Del	Amp_3q26.31	0.842	1
Amp_8q24.21	Del_11q25	0.842	1
Amp_9p24.1	Del_15q21.1	0.842	1
Amp_17q25.1	Del_15q21.1	0.842	1
Del_17q25.3	Del_20p12.1	0.842	1
ERBB3	PIK3CA	0.843	1
PIK3CA	FAT2	0.843	1
PIK3CA	MED1	0.843	1
MUC4	NFE2L2	0.844	1
MUC4	NHS	0.844	1
MUC4	3q-Amp	0.844	1
PIK3CA	6q-Del	0.844	1
PIK3CA	Amp_9p24.1	0.844	1
PIK3CA	Del_17q25.3	0.844	1
11p-Del	Del_13q14.2	0.844	1
FBXW7	Amp_13q34	0.845	1
HLA-A	10q-Del	0.845	1
HLA-A	13q-Del	0.845	1
HLA-A	Amp_16p13.13	0.845	1
PTEN	13q-Del	0.845	1
10q-Del	Amp_6p21.33	0.845	1
Amp_16p13.13	Amp_Xq28	0.845	1
Del_5q12.1	Del_11q25	0.845	1
ANKRD12	Amp_11q22.1	0.846	1
MUC4	C12orf43	0.846	1
ZNF578	8p-Del	0.846	1
ZNF578	Del_5q35.2	0.846	1
LIN9	8p-Del	0.846	1
LIN9	Amp_11q22.1	0.846	1
SMAD4	Amp_11q22.1	0.846	1
SMAD4	Del_5q35.2	0.846	1
3q-Amp	4p-Del	0.846	1
11p-Del	Del_16q11.2	0.846	1
Amp_11p12	Amp_11q22.1	0.846	1
Amp_13q22.1	Del_5q35.2	0.846	1
Amp_1q21.3	Del_5q12.1	0.847	1
CASP8	1q-Amp	0.848	1
CASP8	17p-Del	0.848	1
MTOR	8q-Amp	0.848	1
MTOR	6q-Del	0.848	1
MTOR	Amp_9p24.1	0.848	1
MTOR	Amp_17q25.1	0.848	1
MTOR	Del_17q25.3	0.848	1
TP53	1q-Amp	0.848	1
TRIM9	Amp_1p31.3	0.848	1
19p-Del	Amp_1q44	0.848	1
19p-Del	Del_17p12	0.848	1
6q-Del	Amp_21q22.13	0.848	1
Amp_1q44	Del_1p13.2	0.848	1
Amp_21q22.13	Del_17q25.3	0.848	1
HLA-A	Xp-Del	0.849	1
HLA-A	Del_Xq21.33	0.849	1
MTOR	PIK3CA	0.849	1
PTEN	Xp-Del	0.849	1
PTEN	Del_Xq21.33	0.849	1
Xp-Del	Amp_6p21.33	0.849	1
Xp-Del	Del_2q22.1	0.849	1
Xp-Del	Del_22q13.32	0.849	1
Amp_6p21.33	Del_Xq21.33	0.849	1
Amp_13q34	Del_Xq21.33	0.849	1
Amp_20q11.21	Del_11q23.3	0.849	1
Amp_Xq28	Del_Xq21.33	0.849	1
Del_2q22.1	Del_Xq21.33	0.849	1
Del_22q13.32	Del_Xq21.33	0.849	1
CASP8	PTEN	0.85	1
CASP8	Amp_13q34	0.85	1
CASP8	Amp_Xq28	0.85	1
ERBB2	3q-Del	0.85	1
HLA-A	TP53	0.85	1
HLA-A	22q-Del	0.85	1
MAPK1	PTEN	0.85	1
PTEN	PTPRC	0.85	1
PTEN	RB1	0.85	1
PTEN	Del_19q13.33	0.85	1
PTPRC	Amp_6p21.33	0.85	1
PTPRC	Del_2q22.1	0.85	1
PTPRC	Del_22q13.32	0.85	1
RB1	Amp_Xq28	0.85	1
RB1	Del_2q22.1	0.85	1
RB1	Del_22q13.32	0.85	1
TP53	Del_22q13.32	0.85	1
ZNF750	3q-Del	0.85	1
22q-Del	Amp_13q34	0.85	1
3q-Del	Amp_3q28	0.85	1
4q-Del	Amp_15q26.1	0.85	1
Amp_15q26.1	Del_6p24.2	0.85	1
Del_2q22.1	Del_19q13.33	0.85	1
Del_4q22.1	Del_14q32.31	0.85	1
ANKRD12	STK11	0.851	1
STK11	IDS	0.851	1
STK11	LIN9	0.851	1
STK11	SMAD4	0.851	1
STK11	Amp_11p12	0.851	1
IDS	TCTE1	0.851	1
LIN9	TCTE1	0.851	1
TCTE1	Amp_11p12	0.851	1
1q-Amp	Amp_5p15.33	0.851	1
20p-Amp	17p-Del	0.851	1
EP300	11q-Del	0.852	1
11q-Del	Del_18q21.2	0.852	1
HLA-B	Del_3p14.2	0.853	1
PIK3CA	8p-Del	0.853	1
MED1	Amp_5p15.33	0.853	1
20p-Amp	8q-Amp	0.853	1
20p-Amp	Amp_9p24.1	0.853	1
5p-Amp	Del_11p15.1	0.853	1
5q-Del	Del_8p23.1	0.853	1
6q-Del	Del_8p23.1	0.853	1
Amp_1p31.3	Del_8p23.1	0.853	1
Amp_2q33.1	Del_3p14.2	0.853	1
Amp_11q13.3	Del_3p14.2	0.853	1
Amp_17q12	Del_7q34	0.853	1
Amp_17q25.1	Del_13q14.2	0.853	1
ERBB3	Del_5q12.1	0.854	1
HLA-B	20p-Amp	0.854	1
HLA-B	Del_5q12.1	0.854	1
MUC4	Amp_3q28	0.854	1
MED1	Del_5q12.1	0.854	1
SEMA4B	4q-Del	0.854	1
SEMA4B	Del_6p24.2	0.854	1
13q-Del	Amp_8q24.21	0.854	1
19p-Del	4q-Del	0.854	1
19p-Del	Del_4q22.1	0.854	1
Amp_5p15.33	Del_14q32.31	0.854	1
Amp_8q24.21	Amp_16p13.13	0.854	1
Amp_15q26.1	Del_3p14.2	0.854	1
Del_1p13.2	Del_4q22.1	0.854	1
Del_6p24.2	Del_Xp11.3	0.854	1
ERBB3	NFE2L2	0.855	1
ERBB3	NHS	0.855	1
FBXW7	20q-Amp	0.855	1
FBXW7	Del_6q26	0.855	1
KRAS	Del_1p36.23	0.855	1
MUC4	1p-Amp	0.855	1
MUC4	Del_15q21.1	0.855	1
NFE2L2	Amp_2q33.1	0.855	1
NFE2L2	Amp_11q13.3	0.855	1
MED1	NHS	0.855	1
MED1	Amp_17q12	0.855	1
NHS	Amp_2q33.1	0.855	1
NHS	Amp_11q13.3	0.855	1
20q-Amp	18q-Del	0.855	1
10q-Del	3p-Del	0.855	1
18q-Del	Del_4q35.2	0.855	1
18q-Del	Del_13q12.11	0.855	1
Amp_2q33.1	Del_1p36.23	0.855	1
Amp_11q13.3	Del_1p36.23	0.855	1
MUC4	Amp_19q13.13	0.856	1
Del_5q35.2	Del_6q26	0.856	1
Del_11q23.3	Del_14q32.31	0.856	1
ARID1A	Amp_8q24.21	0.857	1
PTEN	11p-Del	0.857	1
ZNF578	Del_7q34	0.857	1
LIN9	Del_7q34	0.857	1
SMAD4	Del_7q34	0.857	1
11p-Del	Amp_13q34	0.857	1
Amp_8q24.21	Del_14q32.31	0.857	1
Del_3p14.2	Del_17q25.3	0.857	1
ARID1A	Xp-Del	0.858	1
ARID1A	Del_Xq21.33	0.858	1
ERBB2	Amp_20q11.21	0.858	1
MTOR	Del_8p23.1	0.858	1
PTPRC	Del_11q23.3	0.858	1
TRIM9	Del_8p23.1	0.858	1
Xp-Del	Amp_7p11.2	0.858	1
Xp-Del	Amp_15q26.1	0.858	1
Xp-Del	Del_14q32.31	0.858	1
Amp_15q26.1	Del_Xq21.33	0.858	1
Amp_21q22.13	Del_3p14.2	0.858	1
Amp_21q22.13	Del_8p23.1	0.858	1
Del_14q32.31	Del_Xq21.33	0.858	1
LIN9	Amp_3q28	0.859	1
SMAD4	Amp_3q28	0.859	1
20p-Amp	Del_5q35.2	0.859	1
Amp_11q22.1	Del_5q12.1	0.859	1
C3orf70	SEMA4B	0.86	1
C3orf70	19p-Del	0.86	1
C3orf70	Del_1p13.2	0.86	1
C3orf70	Del_Xp11.3	0.86	1
RB1	Del_11p15.1	0.86	1
BAP1	SEMA4B	0.86	1
BAP1	19p-Del	0.86	1
BAP1	Del_1p13.2	0.86	1
BAP1	Del_Xp11.3	0.86	1
C12orf43	SEMA4B	0.86	1
C12orf43	19p-Del	0.86	1
C12orf43	Del_1p13.2	0.86	1
RAB35	SEMA4B	0.86	1
RAB35	19p-Del	0.86	1
RAB35	Del_1p13.2	0.86	1
RAB35	Del_Xp11.3	0.86	1
USP28	19p-Del	0.86	1
USP28	Del_1p13.2	0.86	1
USP28	Del_Xp11.3	0.86	1
Del_11p15.1	Del_19q13.33	0.86	1
C12orf43	Del_8p23.1	0.861	1
C12orf43	Del_13q14.2	0.861	1
RAB35	Del_8p23.1	0.861	1
USP28	Del_13q14.2	0.861	1
3q-Amp	8p-Del	0.861	1
Amp_2p24.3	Del_18q21.2	0.861	1
Amp_19q13.13	Del_15q21.1	0.861	1
EP300	Amp_5p15.33	0.862	1
Amp_2p24.3	Amp_5p15.33	0.862	1
Del_4q22.1	Del_16q23.1	0.862	1
Del_6p24.2	Del_16q11.2	0.862	1
TRIM9	1p-Amp	0.863	1
11p-Del	4p-Del	0.863	1
Amp_21q22.13	Del_20p12.1	0.863	1
ANKRD12	Amp_1q21.3	0.864	1
PTEN	Del_17q25.3	0.864	1
ZNF578	Amp_1q21.3	0.864	1
LIN9	Amp_1q21.3	0.864	1
8q-Amp	Del_2q22.1	0.864	1
11q-Del	Del_5q12.1	0.864	1
5q-Del	Amp_6p21.33	0.864	1
5q-Del	Del_2q22.1	0.864	1
Amp_1p31.3	Amp_6p21.33	0.864	1
Amp_6p21.33	Amp_17q25.1	0.864	1
Amp_9p24.1	Amp_13q34	0.864	1
Amp_9p24.1	Del_22q13.32	0.864	1
Amp_13q34	Del_17q25.3	0.864	1
Amp_17q25.1	Del_2q22.1	0.864	1
Del_2q22.1	Del_17q25.3	0.864	1
Del_17q25.3	Del_22q13.32	0.864	1
CASP8	3q-Del	0.865	1
FBXW7	Del_7q34	0.865	1
MAPK1	3q-Del	0.865	1
PTPRC	3q-Del	0.865	1
RB1	3q-Del	0.865	1
TP53	3q-Del	0.865	1
TP53	Del_2q37.1	0.865	1
LIN9	Amp_3q26.31	0.865	1
SMAD4	Amp_3q26.31	0.865	1
22q-Del	3q-Del	0.865	1
3q-Del	Del_19q13.33	0.865	1
Amp_13q22.1	Del_7q34	0.865	1
ARID1A	CASP8	0.866	1
ARID1A	22q-Del	0.866	1
CASP8	Amp_7p11.2	0.866	1
CASP8	Amp_15q26.1	0.866	1
CASP8	Del_14q32.31	0.866	1
MAPK1	Amp_15q26.1	0.866	1
NFE2L2	3q-Amp	0.866	1
PTPRC	Del_14q32.31	0.866	1
RB1	Amp_15q26.1	0.866	1
RB1	Del_14q32.31	0.866	1
TP53	Amp_15q26.1	0.866	1
20q-Amp	Del_8p23.1	0.866	1
3q-Amp	Amp_17q12	0.866	1
Amp_7p11.2	Del_19q13.33	0.866	1
Del_6q26	Del_8p23.1	0.866	1
FBXW7	19p-Del	0.867	1
FBXW7	Amp_1q44	0.867	1
SEMA4B	10q-Del	0.867	1
SEMA4B	Amp_13q22.1	0.867	1
SEMA4B	Amp_16p13.13	0.867	1
13q-Del	19p-Del	0.867	1
13q-Del	Del_Xp11.3	0.867	1
18q-Del	Del_Xp11.3	0.867	1
19p-Del	Amp_13q22.1	0.867	1
19p-Del	Amp_16p13.13	0.867	1
3q-Del	Amp_1q21.3	0.867	1
Amp_3q26.31	Del_4q21.3	0.867	1
Amp_13q22.1	Del_1p13.2	0.867	1
ANKRD12	Del_16q11.2	0.868	1
ANKRD12	Del_16q23.1	0.868	1
ARID1A	Amp_16p13.13	0.868	1
ERBB3	Del_5q35.2	0.868	1
FBXW7	Amp_15q26.1	0.868	1
HLA-B	8p-Del	0.868	1
HLA-B	Amp_11q22.1	0.868	1
HLA-B	Del_5q35.2	0.868	1
NFE2L2	Del_13q14.2	0.868	1
ZNF578	Del_16q11.2	0.868	1
IDS	Del_4q21.3	0.868	1
IDS	Del_16q23.1	0.868	1
LIN9	Del_16q11.2	0.868	1
SMAD4	Del_16q11.2	0.868	1
SMAD4	Del_16q23.1	0.868	1
ZNF750	Amp_8q24.21	0.868	1
11p-Del	Amp_1q21.3	0.868	1
13q-Del	Amp_7p11.2	0.868	1
18q-Del	Amp_7p11.2	0.868	1
18q-Del	Amp_15q26.1	0.868	1
Amp_11p12	Del_4q21.3	0.868	1
Amp_11q13.3	Del_5q35.2	0.868	1
Amp_17q12	Del_8p23.1	0.868	1
Amp_17q12	Del_13q14.2	0.868	1
Del_1p36.23	Del_8p23.1	0.868	1
Del_3p14.2	Del_8p23.3	0.868	1
ARID1A	Amp_1q44	0.869	1
C3orf70	4p-Del	0.869	1
MUC4	Amp_3q26.31	0.869	1
BAP1	4p-Del	0.869	1
NHS	Del_16q23.1	0.869	1
Del_1p36.23	Del_16q11.2	0.869	1
Del_1p36.23	Del_16q23.1	0.869	1
HLA-B	5p-Amp	0.87	1
FAT2	5p-Amp	0.87	1
11p-Del	Amp_2p24.3	0.87	1
11p-Del	Del_18q21.2	0.87	1
11q-Del	Amp_2q33.1	0.87	1
5q-Del	8p-Del	0.87	1
6q-Del	8p-Del	0.87	1
8p-Del	Amp_9p24.1	0.87	1
Amp_3q28	Amp_7p11.2	0.87	1
STK11	Del_10q23.31	0.871	1
TCTE1	Amp_19q13.13	0.871	1
TCTE1	Del_10q23.31	0.871	1
17p-Del	18q-Del	0.871	1
17p-Del	Amp_13q22.1	0.871	1
ERBB2	Del_10q23.31	0.872	1
ZNF750	Del_10q23.31	0.872	1
Amp_1p31.3	Amp_20q11.21	0.872	1
Del_8p23.1	Del_16q23.1	0.872	1
PTEN	11q-Del	0.873	1
5p-Amp	Amp_13q34	0.873	1
5p-Amp	Amp_Xq28	0.873	1
5p-Amp	Del_22q13.32	0.873	1
11q-Del	Del_2q22.1	0.873	1
Amp_6p21.33	Del_8p23.3	0.873	1
RB1	Amp_1q21.3	0.874	1
STK11	Amp_5p15.33	0.874	1
STK11	Del_3p14.2	0.874	1
TCTE1	Del_3p14.2	0.874	1
20q-Amp	Del_11q25	0.874	1
HLA-B	Amp_2q33.1	0.875	1
STK11	TCTE1	0.875	1
FAT2	Amp_11q13.3	0.875	1
MED1	Amp_2q33.1	0.875	1
SEMA4B	5p-Amp	0.875	1
SEMA4B	11q-Del	0.875	1
SEMA4B	Del_8p23.3	0.875	1
5p-Amp	19p-Del	0.875	1
5p-Amp	Del_Xp11.3	0.875	1
19p-Del	Del_8p23.3	0.875	1
Del_1p13.2	Del_8p23.3	0.875	1
Del_8p23.3	Del_Xp11.3	0.875	1
BAP1	Del_4q35.2	0.876	1
C12orf43	20q-Amp	0.876	1
C12orf43	3p-Del	0.876	1
C12orf43	Del_6q26	0.876	1
C12orf43	Del_13q12.11	0.876	1
RAB35	3p-Del	0.876	1
USP28	3p-Del	0.876	1
USP28	Del_4q35.2	0.876	1
USP28	Del_6q26	0.876	1
USP28	Del_13q12.11	0.876	1
ERBB2	NFE2L2	0.877	1
ERBB2	NHS	0.877	1
ERBB2	Amp_17q12	0.877	1
MTOR	Del_6q26	0.877	1
TRIM9	Del_4q35.2	0.877	1
ZNF750	Amp_1q44	0.877	1
ZNF750	Amp_17q12	0.877	1
1p-Amp	20p-Amp	0.877	1
3p-Del	Amp_3q28	0.877	1
Amp_3q28	Del_6q26	0.877	1
Amp_21q22.13	Del_4q35.2	0.877	1
Amp_21q22.13	Del_6q26	0.877	1
Del_5q12.1	Del_15q21.1	0.877	1
MTOR	Amp_6p21.33	0.878	1
MTOR	Del_22q13.32	0.878	1
NFE2L2	Xp-Del	0.878	1
PTEN	Amp_21q22.13	0.878	1
NHS	Xp-Del	0.878	1
NHS	Del_Xq21.33	0.878	1
TRIM9	Amp_6p21.33	0.878	1
TRIM9	Amp_13q34	0.878	1
Xp-Del	Amp_17q12	0.878	1
Xp-Del	Del_1p36.23	0.878	1
Amp_6p21.33	Amp_21q22.13	0.878	1
Amp_17q12	Del_Xq21.33	0.878	1
Amp_21q22.13	Del_2q22.1	0.878	1
Del_1p36.23	Del_Xq21.33	0.878	1
ANKRD12	C3orf70	0.879	1
ANKRD12	BAP1	0.879	1
ANKRD12	C12orf43	0.879	1
ANKRD12	RAB35	0.879	1
C3orf70	IDS	0.879	1
C3orf70	LIN9	0.879	1
C3orf70	SMAD4	0.879	1
EP300	IDS	0.879	1
MTOR	3q-Del	0.879	1
ZNF578	BAP1	0.879	1
ZNF578	C12orf43	0.879	1
ZNF578	RAB35	0.879	1
ZNF578	Amp_2p24.3	0.879	1
BAP1	LIN9	0.879	1
BAP1	SMAD4	0.879	1
BAP1	Amp_11p12	0.879	1
C12orf43	IDS	0.879	1
C12orf43	LIN9	0.879	1
C12orf43	SMAD4	0.879	1
IDS	RAB35	0.879	1
IDS	Del_18q21.2	0.879	1
LIN9	RAB35	0.879	1
LIN9	Amp_2p24.3	0.879	1
RAB35	SMAD4	0.879	1
RAB35	Amp_11p12	0.879	1
TRIM9	3q-Del	0.879	1
USP28	Amp_11p12	0.879	1
3q-Del	Amp_21q22.13	0.879	1
Amp_11q22.1	Del_5q35.2	0.879	1
C3orf70	Del_11q25	0.88	1
EP300	4q-Del	0.88	1
EP300	Del_4q22.1	0.88	1
MUC4	MED1	0.88	1
MUC4	Del_5q12.1	0.88	1
SEMA4B	8q-Amp	0.88	1
SEMA4B	5q-Del	0.88	1
SEMA4B	Amp_9p24.1	0.88	1
5p-Amp	Del_4q22.1	0.88	1
8q-Amp	19p-Del	0.88	1
19p-Del	5q-Del	0.88	1
3p-Del	Del_7q34	0.88	1
4p-Del	Amp_17q12	0.88	1
4q-Del	Del_18q21.2	0.88	1
5q-Del	Del_1p13.2	0.88	1
5q-Del	Del_Xp11.3	0.88	1
6q-Del	Del_1p13.2	0.88	1
Amp_1p31.3	Del_Xp11.3	0.88	1
Amp_2p24.3	Del_6p24.2	0.88	1
Amp_9p24.1	Del_Xp11.3	0.88	1
Amp_17q25.1	Del_Xp11.3	0.88	1
Del_4q22.1	Del_8p23.3	0.88	1
Del_4q22.1	Del_18q21.2	0.88	1
Del_11q23.3	Del_15q21.1	0.88	1
Del_17q25.3	Del_Xp11.3	0.88	1
MED1	Del_7q34	0.881	1
13q-Del	Del_11q25	0.881	1
18q-Del	Del_11q25	0.881	1
CASP8	11p-Del	0.882	1
FBXW7	Del_4q21.3	0.882	1
HLA-A	1p-Amp	0.882	1
RB1	11p-Del	0.882	1
TP53	11p-Del	0.882	1
20q-Amp	8q-Amp	0.882	1
20q-Amp	Amp_1p31.3	0.882	1
10q-Del	Del_16q23.1	0.882	1
3p-Del	Amp_9p24.1	0.882	1
3p-Del	Amp_17q25.1	0.882	1
3p-Del	Del_17q25.3	0.882	1
Amp_8q24.21	Del_16q23.1	0.882	1
Amp_9p24.1	Del_4q35.2	0.882	1
Amp_13q22.1	Del_4q21.3	0.882	1
Amp_13q34	Del_20p12.1	0.882	1
Amp_19q13.13	Del_16q11.2	0.882	1
Amp_Xq28	Del_15q21.1	0.882	1
Del_8p23.1	Del_15q21.1	0.882	1
Del_10q23.31	Del_16q23.1	0.882	1
Del_13q14.2	Del_15q21.1	0.882	1
Del_20p12.1	Del_22q13.32	0.882	1
BAP1	17p-Del	0.883	1
C12orf43	17p-Del	0.883	1
RAB35	17p-Del	0.883	1
3q-Del	Amp_20q11.21	0.883	1
Del_5q35.2	Del_11q25	0.883	1
MAPK1	Amp_3q26.31	0.884	1
TP53	Amp_3q26.31	0.884	1
11p-Del	Amp_7p11.2	0.884	1
Amp_8q24.21	Del_17q25.3	0.884	1
ARID1A	8q-Amp	0.885	1
ARID1A	6q-Del	0.885	1
ARID1A	Del_17q25.3	0.885	1
MUC4	Del_8p23.1	0.885	1
20q-Amp	4p-Del	0.885	1
13q-Del	Del_11p15.1	0.885	1
5q-Del	Amp_7p11.2	0.885	1
6q-Del	Amp_7p11.2	0.885	1
Amp_1p31.3	Amp_7p11.2	0.885	1
Amp_1p31.3	Del_14q32.31	0.885	1
Amp_7p11.2	Amp_9p24.1	0.885	1
Amp_7p11.2	Amp_17q25.1	0.885	1
Amp_9p24.1	Del_14q32.31	0.885	1
Amp_15q26.1	Amp_17q25.1	0.885	1
Del_11q23.3	Del_16q23.1	0.885	1
ANKRD12	Amp_20q11.21	0.886	1
HLA-A	Del_10q23.31	0.886	1
LIN9	Amp_20q11.21	0.886	1
Amp_13q34	Amp_19q13.13	0.886	1
Amp_19q13.13	Amp_Xq28	0.886	1
NFE2L2	Amp_1q21.3	0.887	1
17p-Del	Amp_21q22.13	0.887	1
Amp_1q21.3	Amp_17q12	0.887	1
Amp_1q21.3	Del_1p36.23	0.887	1
ERBB3	Xp-Del	0.888	1
ERBB3	Del_Xq21.33	0.888	1
HLA-B	Xp-Del	0.888	1
HLA-B	Del_Xq21.33	0.888	1
KRAS	Xp-Del	0.888	1
KRAS	Del_Xq21.33	0.888	1
FAT2	Xp-Del	0.888	1
FAT2	Del_Xq21.33	0.888	1
MED1	Xp-Del	0.888	1
MED1	Del_Xq21.33	0.888	1
3q-Amp	Amp_19q13.13	0.888	1
5p-Amp	8p-Del	0.888	1
11q-Del	8p-Del	0.888	1
11q-Del	Del_5q35.2	0.888	1
Xp-Del	Amp_11q13.3	0.888	1
Amp_2q33.1	Del_Xq21.33	0.888	1
Amp_3q28	Amp_5p15.33	0.888	1
Amp_11q13.3	Del_Xq21.33	0.888	1
ANKRD12	Del_6p24.2	0.889	1
PIK3CA	Amp_20q11.21	0.889	1
ZNF578	Del_4q22.1	0.889	1
ZNF578	Del_6p24.2	0.889	1
IDS	Del_6p24.2	0.889	1
LIN9	Del_4q22.1	0.889	1
LIN9	Del_6p24.2	0.889	1
SMAD4	4q-Del	0.889	1
TCTE1	8p-Del	0.889	1
TCTE1	Amp_11q22.1	0.889	1
Amp_3q26.31	Del_6q26	0.889	1
Amp_3q28	Del_11p15.1	0.889	1
Amp_11p12	Del_6p24.2	0.889	1
Amp_19q13.13	Del_8p23.1	0.889	1
C3orf70	Del_11p15.1	0.89	1
C3orf70	Del_11q23.3	0.89	1
BAP1	Del_11p15.1	0.89	1
NFE2L2	20q-Amp	0.891	1
Amp_6p21.33	Del_2q37.1	0.891	1
Amp_13q34	Del_2q37.1	0.891	1
Amp_17q12	Del_6q26	0.891	1
Amp_17q12	Del_13q12.11	0.891	1
Amp_20q11.21	Del_11q25	0.891	1
Del_1p36.23	Del_6q26	0.891	1
ARID1A	Amp_21q22.13	0.892	1
MTOR	Amp_15q26.1	0.892	1
MUC4	Del_3p14.2	0.892	1
TRIM9	Del_14q32.31	0.892	1
1p-Amp	Del_Xp11.3	0.892	1
8q-Amp	Amp_3q28	0.892	1
11p-Del	Del_6p24.2	0.892	1
19p-Del	Del_20p12.1	0.892	1
6q-Del	Amp_3q28	0.892	1
8p-Del	Del_15q21.1	0.892	1
Amp_3q28	Amp_17q25.1	0.892	1
Del_1p13.2	Del_15q21.1	0.892	1
Del_5q35.2	Del_15q21.1	0.892	1
Del_5q35.2	Del_20p12.1	0.892	1
Del_20p12.1	Del_Xp11.3	0.892	1
LIN9	Amp_8q24.21	0.893	1
SEMA4B	3q-Del	0.893	1
3q-Del	Amp_1q44	0.893	1
3q-Del	Del_17p12	0.893	1
3q-Del	Del_Xp11.3	0.893	1
ERBB3	Del_4q21.3	0.894	1
ERBB3	Del_16q11.2	0.894	1
ERBB3	Del_16q23.1	0.894	1
FAT2	Del_16q23.1	0.894	1
Amp_2q33.1	Del_4q21.3	0.894	1
Amp_2q33.1	Del_16q11.2	0.894	1
Amp_2q33.1	Del_16q23.1	0.894	1
Amp_5p15.33	Del_6p24.2	0.894	1
Amp_11q13.3	Del_4q21.3	0.894	1
Amp_11q13.3	Del_16q11.2	0.894	1
ERBB2	HLA-B	0.895	1
ERBB2	FAT2	0.895	1
ERBB2	Amp_2q33.1	0.895	1
ERBB3	ZNF750	0.895	1
Del_16q11.2	Del_17p12	0.895	1
ERBB2	8p-Del	0.896	1
NFE2L2	Amp_3q28	0.896	1
NHS	Amp_3q28	0.896	1
8q-Amp	Amp_1q44	0.896	1
8q-Amp	Del_17p12	0.896	1
Amp_1q44	Amp_9p24.1	0.896	1
NHS	4q-Del	0.897	1
NHS	Del_6p24.2	0.897	1
3q-Amp	11q-Del	0.897	1
5p-Amp	11p-Del	0.897	1
4q-Del	Amp_17q12	0.897	1
Amp_3q26.31	Del_2q37.1	0.897	1
CASP8	NFE2L2	0.898	1
CASP8	NHS	0.898	1
EP300	FBXW7	0.898	1
EP300	10q-Del	0.898	1
EP300	Amp_16p13.13	0.898	1
ERBB2	Xp-Del	0.898	1
ERBB2	Del_Xq21.33	0.898	1
NFE2L2	PTPRC	0.898	1
NFE2L2	TP53	0.898	1
RB1	NHS	0.898	1
RB1	Amp_17q12	0.898	1
STK11	Del_7q34	0.898	1
TP53	Amp_17q12	0.898	1
NHS	22q-Del	0.898	1
ZNF750	Xp-Del	0.898	1
ZNF750	Del_Xq21.33	0.898	1
20p-Amp	Del_16q11.2	0.898	1
20p-Amp	Del_16q23.1	0.898	1
10q-Del	Del_18q21.2	0.898	1
18q-Del	Amp_2p24.3	0.898	1
22q-Del	Del_1p36.23	0.898	1
Amp_16p13.13	Del_18q21.2	0.898	1
Amp_17q12	Del_19q13.33	0.898	1
C3orf70	STK11	0.899	1
C3orf70	TCTE1	0.899	1
PTEN	20p-Amp	0.899	1
PTPRC	Amp_20q11.21	0.899	1
RB1	Amp_20q11.21	0.899	1
STK11	BAP1	0.899	1
STK11	C12orf43	0.899	1
STK11	RAB35	0.899	1
STK11	USP28	0.899	1
ZNF578	Amp_1q44	0.899	1
BAP1	TCTE1	0.899	1
IDS	Del_17p12	0.899	1
LIN9	Amp_1q44	0.899	1
RAB35	TCTE1	0.899	1
SEMA4B	Del_8p23.1	0.899	1
TCTE1	USP28	0.899	1
ZNF750	Amp_5p15.33	0.899	1
20p-Amp	Del_22q13.32	0.899	1
Amp_1q44	Amp_11p12	0.899	1
Amp_1q44	Del_11p15.1	0.899	1
Del_1p13.2	Del_8p23.1	0.899	1
Del_1p13.2	Del_13q14.2	0.899	1
Del_2q22.1	Del_5q12.1	0.899	1
Del_8p23.1	Del_Xp11.3	0.899	1
ANKRD12	10q-Del	0.9	1
ANKRD12	13q-Del	0.9	1
ANKRD12	Amp_13q22.1	0.9	1
FBXW7	Amp_11p12	0.9	1
PTEN	Del_22q13.32	0.9	1
ZNF578	Amp_16p13.13	0.9	1
FAT2	Del_13q14.2	0.9	1
IDS	18q-Del	0.9	1
IDS	Amp_13q22.1	0.9	1
LIN9	Amp_13q22.1	0.9	1
LIN9	Amp_16p13.13	0.9	1
13q-Del	Del_11q23.3	0.9	1
Amp_1q21.3	Amp_Xq28	0.9	1
Amp_6p21.33	Amp_Xq28	0.9	1
Amp_11p12	Amp_16p13.13	0.9	1
NFE2L2	17p-Del	0.901	1
NHS	17p-Del	0.901	1
1p-Amp	Del_14q32.31	0.901	1
1q-Amp	Del_1p36.23	0.901	1
8q-Amp	Del_16q23.1	0.901	1
11p-Del	Amp_3q28	0.901	1
6q-Del	Del_4q21.3	0.901	1
Amp_2p24.3	Amp_19q13.13	0.901	1
Amp_9p24.1	Del_4q21.3	0.901	1
Del_4q21.3	Del_6q26	0.901	1
Del_14q32.31	Del_15q21.1	0.901	1
CASP8	Amp_19q13.13	0.902	1
MUC4	8p-Del	0.902	1
NFE2L2	Amp_3q26.31	0.902	1
RB1	Del_10q23.31	0.902	1
TP53	Amp_19q13.13	0.902	1
NHS	Amp_3q26.31	0.902	1
20q-Amp	Del_4q35.2	0.902	1
3q-Amp	Del_Xq21.33	0.902	1
5p-Amp	Del_14q32.31	0.902	1
22q-Del	Amp_19q13.13	0.902	1
22q-Del	Del_10q23.31	0.902	1
C3orf70	11p-Del	0.903	1
MUC4	4p-Del	0.903	1
BAP1	11p-Del	0.903	1
13q-Del	Del_2q37.1	0.903	1
Amp_1q44	Del_11q23.3	0.903	1
ERBB2	Del_8p23.3	0.904	1
HLA-A	19p-Del	0.904	1
PTEN	SEMA4B	0.904	1
SEMA4B	Amp_13q34	0.904	1
SEMA4B	Del_22q13.32	0.904	1
5p-Amp	13q-Del	0.904	1
5p-Amp	Del_2q37.1	0.904	1
10q-Del	Del_8p23.3	0.904	1
Amp_6p21.33	Del_1p13.2	0.904	1
Amp_13q34	Del_1p13.2	0.904	1
Amp_21q22.13	Del_11q25	0.904	1
Del_1p13.2	Del_2q22.1	0.904	1
5p-Amp	Del_4q35.2	0.905	1
11q-Del	3p-Del	0.905	1
11q-Del	Del_4q35.2	0.905	1
11q-Del	Del_13q12.11	0.905	1
Del_8p23.3	Del_13q12.11	0.905	1
EP300	FAT2	0.906	1
EP300	Amp_2q33.1	0.906	1
ERBB3	Amp_2p24.3	0.906	1
ERBB3	Del_18q21.2	0.906	1
PTPRC	Amp_8q24.21	0.906	1
STK11	Del_4q21.3	0.906	1
STK11	Del_16q23.1	0.906	1
1p-Amp	20q-Amp	0.906	1
Del_4q35.2	Del_15q21.1	0.906	1
Del_6q26	Del_20p12.1	0.906	1
Del_7q34	Del_15q21.1	0.906	1
Del_13q12.11	Del_15q21.1	0.906	1
C3orf70	3q-Amp	0.907	1
ERBB2	Del_7q34	0.907	1
C12orf43	3q-Amp	0.907	1
8q-Amp	Del_11p15.1	0.907	1
19p-Del	4p-Del	0.907	1
Amp_6p21.33	Del_8p23.1	0.907	1
Amp_6p21.33	Del_13q14.2	0.907	1
Del_2q22.1	Del_13q14.2	0.907	1
Del_8p23.1	Del_22q13.32	0.907	1
ANKRD12	3q-Del	0.908	1
CASP8	Xp-Del	0.908	1
CASP8	Del_Xq21.33	0.908	1
MAPK1	Xp-Del	0.908	1
MAPK1	Del_Xq21.33	0.908	1
PTPRC	Xp-Del	0.908	1
PTPRC	Del_Xq21.33	0.908	1
RB1	Xp-Del	0.908	1
RB1	Del_Xq21.33	0.908	1
TP53	Xp-Del	0.908	1
TP53	Del_Xq21.33	0.908	1
ZNF578	3q-Del	0.908	1
IDS	3q-Del	0.908	1
LIN9	3q-Del	0.908	1
SMAD4	3q-Del	0.908	1
11q-Del	3q-Del	0.908	1
22q-Del	Xp-Del	0.908	1
22q-Del	Del_Xq21.33	0.908	1
3q-Del	Amp_11p12	0.908	1
4p-Del	Amp_3q28	0.908	1
Xp-Del	Del_19q13.33	0.908	1
Amp_7p11.2	Amp_19q13.13	0.908	1
Amp_19q13.13	Del_14q32.31	0.908	1
Del_19q13.33	Del_Xq21.33	0.908	1
ZNF578	6q-Del	0.909	1
ZNF578	Amp_17q25.1	0.909	1
IDS	Amp_9p24.1	0.909	1
IDS	Del_17q25.3	0.909	1
LIN9	Amp_9p24.1	0.909	1
LIN9	Amp_17q25.1	0.909	1
LIN9	Del_17q25.3	0.909	1
SMAD4	Amp_17q25.1	0.909	1
SMAD4	Del_17q25.3	0.909	1
5p-Amp	Del_7q34	0.909	1
4p-Del	Amp_11q13.3	0.909	1
6q-Del	Amp_11p12	0.909	1
Amp_1p31.3	Amp_11p12	0.909	1
Amp_5p15.33	Del_13q12.11	0.909	1
Amp_11p12	Amp_17q25.1	0.909	1
Amp_11p12	Del_17q25.3	0.909	1
FBXW7	Amp_17q12	0.91	1
NFE2L2	13q-Del	0.91	1
NFE2L2	Amp_13q22.1	0.91	1
10q-Del	Amp_17q12	0.91	1
13q-Del	Amp_17q12	0.91	1
Amp_16p13.13	Amp_17q12	0.91	1
Amp_16p13.13	Del_1p36.23	0.91	1
Amp_21q22.13	Del_2q37.1	0.91	1
ERBB2	ZNF750	0.911	1
HLA-B	3q-Amp	0.911	1
SEMA4B	Amp_5p15.33	0.911	1
SEMA4B	Del_3p14.2	0.911	1
1p-Amp	Amp_8q24.21	0.911	1
11p-Del	18q-Del	0.911	1
19p-Del	Amp_5p15.33	0.911	1
19p-Del	Del_3p14.2	0.911	1
Del_1p13.2	Del_3p14.2	0.911	1
Del_3p14.2	Del_Xp11.3	0.911	1
8p-Del	Del_22q13.32	0.912	1
Amp_3q28	Amp_13q34	0.912	1
Amp_11q22.1	Amp_Xq28	0.912	1
CASP8	FAT2	0.913	1
CASP8	MED1	0.913	1
CASP8	Amp_2q33.1	0.913	1
CASP8	Amp_11q13.3	0.913	1
ERBB3	PTPRC	0.913	1
ERBB3	TP53	0.913	1
FBXW7	4q-Del	0.913	1
HLA-B	MAPK1	0.913	1
HLA-B	PTPRC	0.913	1
HLA-B	Del_19q13.33	0.913	1
KRAS	PTPRC	0.913	1
KRAS	TP53	0.913	1
MAPK1	FAT2	0.913	1
MAPK1	MED1	0.913	1
PTPRC	MED1	0.913	1
PTPRC	Amp_2q33.1	0.913	1
RB1	FAT2	0.913	1
RB1	MED1	0.913	1
TP53	MED1	0.913	1
TP53	Amp_2q33.1	0.913	1
TP53	Amp_11q13.3	0.913	1
FAT2	22q-Del	0.913	1
10q-Del	Del_6p24.2	0.913	1
11p-Del	Amp_21q22.13	0.913	1
18q-Del	4q-Del	0.913	1
18q-Del	Del_4q22.1	0.913	1
22q-Del	Amp_11q13.3	0.913	1
4q-Del	Amp_13q22.1	0.913	1
8p-Del	Del_4q21.3	0.913	1
Amp_11q13.3	Del_19q13.33	0.913	1
CASP8	Amp_1q44	0.914	1
EP300	STK11	0.914	1
EP300	TCTE1	0.914	1
RB1	Amp_1q44	0.914	1
RB1	Del_17p12	0.914	1
TP53	Amp_1q44	0.914	1
TCTE1	Del_18q21.2	0.914	1
1q-Amp	Del_16q23.1	0.914	1
19p-Del	3p-Del	0.914	1
19p-Del	Del_4q35.2	0.914	1
19p-Del	Del_13q12.11	0.914	1
22q-Del	Del_17p12	0.914	1
3p-Del	Del_1p13.2	0.914	1
Del_1p13.2	Del_6q26	0.914	1
Del_2q37.1	Del_16q23.1	0.914	1
Del_4q35.2	Del_Xp11.3	0.914	1
Del_13q12.11	Del_Xp11.3	0.914	1
ARID1A	19p-Del	0.915	1
ARID1A	Del_1p13.2	0.915	1
EP300	Amp_9p24.1	0.915	1
EP300	Del_5q12.1	0.915	1
FBXW7	MUC4	0.915	1
MUC4	13q-Del	0.915	1
SEMA4B	Amp_7p11.2	0.915	1
19p-Del	Amp_7p11.2	0.915	1
5q-Del	Amp_2p24.3	0.915	1
Amp_1p31.3	Amp_2p24.3	0.915	1
Amp_2p24.3	Del_5q12.1	0.915	1
Amp_7p11.2	Del_1p13.2	0.915	1
Amp_7p11.2	Del_Xp11.3	0.915	1
Amp_17q25.1	Del_18q21.2	0.915	1
Del_1p13.2	Del_14q32.31	0.915	1
Del_5q12.1	Del_18q21.2	0.915	1
HLA-A	Amp_15q26.1	0.916	1
PIK3CA	Amp_Xq28	0.916	1
BAP1	Del_10q23.31	0.916	1
USP28	Amp_19q13.13	0.916	1
USP28	Del_10q23.31	0.916	1
17p-Del	Del_15q21.1	0.916	1
Amp_6p21.33	Del_14q32.31	0.916	1
Amp_15q26.1	Del_22q13.32	0.916	1
Amp_Xq28	Del_14q32.31	0.916	1
Del_4q22.1	Del_8p23.1	0.916	1
ERBB2	Del_16q11.2	0.917	1
ERBB3	Del_4q22.1	0.917	1
FAT2	Del_4q22.1	0.917	1
1q-Amp	20q-Amp	0.917	1
3p-Del	Del_10q23.31	0.917	1
4q-Del	Amp_2q33.1	0.917	1
5q-Del	Del_11q25	0.917	1
Amp_2p24.3	Del_11q23.3	0.917	1
Del_6q26	Del_10q23.31	0.917	1
ANKRD12	5p-Amp	0.918	1
C3orf70	BAP1	0.918	1
C3orf70	C12orf43	0.918	1
C3orf70	RAB35	0.918	1
C3orf70	USP28	0.918	1
HLA-B	20q-Amp	0.918	1
MTOR	NFE2L2	0.918	1
MTOR	NHS	0.918	1
MTOR	Xp-Del	0.918	1
MTOR	Amp_17q12	0.918	1
MTOR	Del_Xq21.33	0.918	1
BAP1	C12orf43	0.918	1
BAP1	RAB35	0.918	1
BAP1	USP28	0.918	1
C12orf43	RAB35	0.918	1
C12orf43	USP28	0.918	1
FAT2	3p-Del	0.918	1
IDS	Del_8p23.3	0.918	1
LIN9	5p-Amp	0.918	1
LIN9	11q-Del	0.918	1
MED1	Del_13q12.11	0.918	1
RAB35	USP28	0.918	1
SMAD4	Del_8p23.3	0.918	1
TRIM9	Xp-Del	0.918	1
TRIM9	Del_1p36.23	0.918	1
TRIM9	Del_Xq21.33	0.918	1
20q-Amp	Amp_2q33.1	0.918	1
4q-Del	Amp_19q13.13	0.918	1
4q-Del	Amp_20q11.21	0.918	1
Xp-Del	Amp_21q22.13	0.918	1
Amp_2q33.1	Del_6q26	0.918	1
Amp_3q26.31	Del_2q22.1	0.918	1
Amp_21q22.13	Del_1p36.23	0.918	1
Amp_21q22.13	Del_Xq21.33	0.918	1
Del_4q21.3	Del_20p12.1	0.918	1
Del_15q21.1	Del_16q11.2	0.918	1
Del_15q21.1	Del_16q23.1	0.918	1
STK11	Amp_1q21.3	0.919	1
ZNF578	Del_15q21.1	0.919	1
ZNF578	Del_20p12.1	0.919	1
IDS	Del_15q21.1	0.919	1
IDS	Del_20p12.1	0.919	1
LIN9	1p-Amp	0.919	1
LIN9	Del_15q21.1	0.919	1
LIN9	Del_20p12.1	0.919	1
TCTE1	Amp_1q21.3	0.919	1
Amp_1q44	Del_15q21.1	0.92	1
Amp_2p24.3	Del_6q26	0.92	1
Amp_7p11.2	Del_2q37.1	0.92	1
Amp_15q26.1	Del_2q37.1	0.92	1
C3orf70	Amp_3q28	0.921	1
CASP8	Amp_11q22.1	0.921	1
MUC4	Del_7q34	0.921	1
PTPRC	8p-Del	0.921	1
TP53	8p-Del	0.921	1
BAP1	Amp_3q28	0.921	1
IDS	3q-Amp	0.921	1
NHS	Amp_8q24.21	0.921	1
RAB35	Amp_3q28	0.921	1
17p-Del	19p-Del	0.921	1
17p-Del	Del_Xp11.3	0.921	1
C3orf70	Del_5q12.1	0.922	1
NFE2L2	5q-Del	0.922	1
NFE2L2	Amp_9p24.1	0.922	1
NFE2L2	Del_17q25.3	0.922	1
STK11	Del_4q22.1	0.922	1
C12orf43	20p-Amp	0.922	1
NHS	Del_17q25.3	0.922	1
USP28	Del_5q12.1	0.922	1
5p-Amp	Amp_1q44	0.922	1
11q-Del	17p-Del	0.922	1
3q-Del	Del_13q14.2	0.922	1
5q-Del	Amp_17q12	0.922	1
5q-Del	Del_1p36.23	0.922	1
6q-Del	Del_1p36.23	0.922	1
Amp_9p24.1	Amp_17q12	0.922	1
Amp_17q12	Del_17q25.3	0.922	1
STK11	3q-Del	0.923	1
TCTE1	3q-Del	0.923	1
Amp_8q24.21	Del_6q26	0.923	1
Amp_13q34	Del_7q34	0.923	1
C3orf70	Amp_3q26.31	0.924	1
HLA-A	Del_3p14.2	0.924	1
MUC4	Amp_8q24.21	0.924	1
PIK3CA	Del_Xq21.33	0.924	1
BAP1	Amp_3q26.31	0.924	1
RAB35	Amp_3q26.31	0.924	1
20p-Amp	Amp_5p15.33	0.924	1
8p-Del	Amp_8q24.21	0.924	1
Amp_5p15.33	Amp_13q34	0.924	1
Del_3p14.2	Del_22q13.32	0.924	1
Del_11p15.1	Del_16q11.2	0.925	1
Del_11p15.1	Del_16q23.1	0.925	1
FAT2	17p-Del	0.926	1
MED1	1q-Amp	0.926	1
1q-Amp	Amp_2q33.1	0.926	1
5p-Amp	Del_17q25.3	0.926	1
8q-Amp	11q-Del	0.926	1
8q-Amp	Del_8p23.3	0.926	1
11q-Del	Del_17q25.3	0.926	1
17p-Del	Amp_2q33.1	0.926	1
Amp_8q24.21	Del_17p12	0.926	1
CASP8	ERBB2	0.927	1
CASP8	ZNF750	0.927	1
ERBB2	TP53	0.927	1
ERBB2	Del_8p23.1	0.927	1
ERBB2	Del_18q21.2	0.927	1
FBXW7	Amp_13q22.1	0.927	1
FBXW7	Amp_16p13.13	0.927	1
MAPK1	ZNF750	0.927	1
PTEN	Del_4q35.2	0.927	1
TP53	ZNF750	0.927	1
1q-Amp	Amp_20q11.21	0.927	1
20q-Amp	Amp_Xq28	0.927	1
8q-Amp	Del_2q37.1	0.927	1
10q-Del	18q-Del	0.927	1
3p-Del	Del_22q13.32	0.927	1
3q-Del	4p-Del	0.927	1
Xp-Del	Del_3p14.2	0.927	1
Amp_6p21.33	Del_4q35.2	0.927	1
Amp_6p21.33	Del_13q12.11	0.927	1
Amp_13q22.1	Amp_16p13.13	0.927	1
Del_2q22.1	Del_6q26	0.927	1
Del_3p14.2	Del_Xq21.33	0.927	1
ANKRD12	Amp_13q34	0.928	1
C3orf70	Del_5q35.2	0.928	1
ERBB3	FBXW7	0.928	1
ERBB3	18q-Del	0.928	1
FBXW7	HLA-B	0.928	1
FBXW7	MED1	0.928	1
HLA-A	ZNF578	0.928	1
HLA-A	IDS	0.928	1
HLA-A	SMAD4	0.928	1
HLA-B	10q-Del	0.928	1
HLA-B	Amp_13q22.1	0.928	1
HLA-B	Amp_16p13.13	0.928	1
KRAS	18q-Del	0.928	1
NFE2L2	Amp_1q44	0.928	1
PTEN	IDS	0.928	1
PTEN	Amp_11p12	0.928	1
FAT2	13q-Del	0.928	1
IDS	Amp_13q34	0.928	1
LIN9	Amp_6p21.33	0.928	1
LIN9	Amp_13q34	0.928	1
LIN9	Amp_Xq28	0.928	1
MED1	13q-Del	0.928	1
MED1	Amp_13q22.1	0.928	1
RAB35	8p-Del	0.928	1
SEMA4B	Xp-Del	0.928	1
SEMA4B	Del_11p15.1	0.928	1
SMAD4	Del_22q13.32	0.928	1
USP28	Del_5q35.2	0.928	1
8q-Amp	4q-Del	0.928	1
8q-Amp	Del_4q22.1	0.928	1
11q-Del	Del_16q11.2	0.928	1
19p-Del	Xp-Del	0.928	1
19p-Del	Del_Xq21.33	0.928	1
5q-Del	Del_6p24.2	0.928	1
6q-Del	Del_4q22.1	0.928	1
Xp-Del	Del_1p13.2	0.928	1
Amp_1q21.3	Amp_15q26.1	0.928	1
Amp_2p24.3	Amp_11q22.1	0.928	1
Amp_2p24.3	Del_5q35.2	0.928	1
Amp_9p24.1	Del_6p24.2	0.928	1
Amp_11p12	Del_2q22.1	0.928	1
Amp_11p12	Del_22q13.32	0.928	1
Amp_11q22.1	Del_18q21.2	0.928	1
Amp_17q25.1	Del_6p24.2	0.928	1
Del_1p13.2	Del_11p15.1	0.928	1
Del_1p13.2	Del_Xq21.33	0.928	1
Del_5q35.2	Del_18q21.2	0.928	1
Del_8p23.3	Del_16q11.2	0.928	1
Del_Xp11.3	Del_Xq21.33	0.928	1
ARID1A	Amp_15q26.1	0.929	1
ARID1A	Del_14q32.31	0.929	1
FBXW7	TCTE1	0.929	1
STK11	13q-Del	0.929	1
TCTE1	18q-Del	0.929	1
TCTE1	Amp_13q22.1	0.929	1
TCTE1	Amp_16p13.13	0.929	1
11p-Del	Amp_17q12	0.929	1
11p-Del	Amp_17q25.1	0.929	1
22q-Del	Del_7q34	0.929	1
Amp_7p11.2	Del_13q14.2	0.929	1
Amp_15q26.1	Del_14q32.31	0.929	1
Amp_21q22.13	Del_10q23.31	0.929	1
Del_7q34	Del_19q13.33	0.929	1
Del_13q14.2	Del_14q32.31	0.929	1
EP300	1q-Amp	0.93	1
EP300	Del_15q21.1	0.93	1
ERBB3	MTOR	0.93	1
ERBB3	Amp_21q22.13	0.93	1
MTOR	FAT2	0.93	1
MTOR	Amp_2q33.1	0.93	1
MED1	TRIM9	0.93	1
MED1	Amp_21q22.13	0.93	1
TRIM9	Amp_11q13.3	0.93	1
1q-Amp	Amp_2p24.3	0.93	1
Amp_2q33.1	Amp_21q22.13	0.93	1
Amp_11q13.3	Amp_21q22.13	0.93	1
Amp_19q13.13	Del_5q12.1	0.93	1
Del_5q12.1	Del_6p24.2	0.93	1
Del_6p24.2	Del_11q25	0.93	1
Del_15q21.1	Del_18q21.2	0.93	1
PIK3CA	PTPRC	0.931	1
PIK3CA	RB1	0.931	1
20q-Amp	3q-Del	0.931	1
3q-Del	Del_4q35.2	0.931	1
3q-Del	Del_6q26	0.931	1
3q-Del	Del_13q12.11	0.931	1
4p-Del	Del_13q14.2	0.931	1
Del_7q34	Del_11q23.3	0.931	1
11q-Del	Del_10q23.31	0.932	1
Amp_19q13.13	Del_8p23.3	0.932	1
NHS	Del_15q21.1	0.933	1
NHS	Del_20p12.1	0.933	1
TCTE1	Amp_20q11.21	0.933	1
Amp_20q11.21	Amp_21q22.13	0.933	1
C3orf70	Del_7q34	0.934	1
CASP8	5p-Amp	0.934	1
FBXW7	Amp_19q13.13	0.934	1
MUC4	17p-Del	0.934	1
PIK3CA	RAB35	0.934	1
PIK3CA	USP28	0.934	1
PTEN	Amp_8q24.21	0.934	1
C12orf43	Del_7q34	0.934	1
20q-Amp	Del_17p12	0.934	1
5p-Amp	22q-Del	0.934	1
11q-Del	22q-Del	0.934	1
18q-Del	Del_10q23.31	0.934	1
8p-Del	Del_17p12	0.934	1
Amp_13q22.1	Amp_19q13.13	0.934	1
Del_2q22.1	Del_16q11.2	0.934	1
MUC4	8q-Amp	0.935	1
MUC4	6q-Del	0.935	1
MUC4	Amp_9p24.1	0.935	1
IDS	Del_8p23.1	0.935	1
SMAD4	Del_8p23.1	0.935	1
1q-Amp	3q-Del	0.935	1
1q-Amp	Amp_6p21.33	0.935	1
17p-Del	3q-Del	0.935	1
17p-Del	Del_22q13.32	0.935	1
Amp_1q21.3	Amp_17q25.1	0.935	1
Del_2q37.1	Del_18q21.2	0.935	1
CASP8	Amp_5p15.33	0.936	1
ERBB2	Del_4q22.1	0.936	1
MUC4	Del_17p12	0.936	1
NFE2L2	19p-Del	0.936	1
NHS	Del_Xp11.3	0.936	1
TCTE1	5q-Del	0.936	1
TCTE1	Amp_1p31.3	0.936	1
TCTE1	Amp_17q25.1	0.936	1
20p-Amp	Amp_21q22.13	0.936	1
20q-Amp	4q-Del	0.936	1
Amp_1q44	Del_6p24.2	0.936	1
Amp_5p15.33	Del_19q13.33	0.936	1
Amp_17q12	Del_Xp11.3	0.936	1
Del_1p36.23	Del_1p13.2	0.936	1
Del_1p36.23	Del_Xp11.3	0.936	1
Del_4q22.1	Del_6q26	0.936	1
Del_6p24.2	Del_13q12.11	0.936	1
ANKRD12	ARID1A	0.937	1
ARID1A	ZNF578	0.937	1
PTPRC	Del_16q11.2	0.937	1
PTPRC	Del_16q23.1	0.937	1
TP53	Del_16q23.1	0.937	1
ZNF578	Amp_7p11.2	0.937	1
IDS	Amp_7p11.2	0.937	1
IDS	Del_14q32.31	0.937	1
LIN9	Del_14q32.31	0.937	1
SMAD4	Amp_15q26.1	0.937	1
SMAD4	Del_14q32.31	0.937	1
22q-Del	Del_16q11.2	0.937	1
22q-Del	Del_16q23.1	0.937	1
4p-Del	Del_14q32.31	0.937	1
Amp_7p11.2	Amp_11p12	0.937	1
Amp_7p11.2	Del_11q25	0.937	1
Del_4q21.3	Del_19q13.33	0.937	1
ANKRD12	Xp-Del	0.938	1
ANKRD12	Del_Xq21.33	0.938	1
C3orf70	3q-Del	0.938	1
ERBB3	Amp_9p24.1	0.938	1
KRAS	8q-Amp	0.938	1
ZNF578	Xp-Del	0.938	1
ZNF578	Del_Xq21.33	0.938	1
BAP1	3q-Del	0.938	1
C12orf43	3q-Del	0.938	1
C12orf43	Del_3p14.2	0.938	1
FAT2	Amp_9p24.1	0.938	1
IDS	Xp-Del	0.938	1
IDS	Del_Xq21.33	0.938	1
LIN9	Xp-Del	0.938	1
LIN9	Del_Xq21.33	0.938	1
MED1	Amp_9p24.1	0.938	1
RAB35	3q-Del	0.938	1
RAB35	Del_3p14.2	0.938	1
SMAD4	Xp-Del	0.938	1
SMAD4	Del_Xq21.33	0.938	1
USP28	3q-Del	0.938	1
USP28	Del_3p14.2	0.938	1
8q-Amp	Amp_2q33.1	0.938	1
Amp_1p31.3	Amp_2q33.1	0.938	1
Amp_1p31.3	Amp_11q13.3	0.938	1
Amp_3q28	Del_4q21.3	0.938	1
Amp_11p12	Del_Xq21.33	0.938	1
Amp_16p13.13	Amp_20q11.21	0.938	1
Amp_17q12	Del_11q23.3	0.938	1
MTOR	Amp_8q24.21	0.939	1
MUC4	TP53	0.939	1
TRIM9	Amp_8q24.21	0.939	1
Amp_1q44	Amp_5p15.33	0.939	1
Amp_8q24.21	Amp_21q22.13	0.939	1
Amp_15q26.1	Del_7q34	0.939	1
CASP8	PTPRC	0.94	1
CASP8	TP53	0.94	1
CASP8	Del_19q13.33	0.94	1
FBXW7	5q-Del	0.94	1
PTPRC	TP53	0.94	1
PTPRC	22q-Del	0.94	1
RB1	TP53	0.94	1
TP53	22q-Del	0.94	1
ZNF578	4p-Del	0.94	1
C12orf43	Del_4q21.3	0.94	1
C12orf43	Del_16q11.2	0.94	1
C12orf43	Del_16q23.1	0.94	1
FAT2	Amp_20q11.21	0.94	1
SMAD4	4p-Del	0.94	1
USP28	Del_16q23.1	0.94	1
8q-Amp	Amp_13q22.1	0.94	1
10q-Del	Amp_9p24.1	0.94	1
10q-Del	Amp_17q25.1	0.94	1
10q-Del	Del_17q25.3	0.94	1
13q-Del	Amp_9p24.1	0.94	1
13q-Del	Del_17q25.3	0.94	1
18q-Del	Amp_17q25.1	0.94	1
22q-Del	Del_19q13.33	0.94	1
Del_11p15.1	Del_18q21.2	0.94	1
Del_11q25	Del_16q23.1	0.94	1
HLA-A	Amp_1q44	0.941	1
STK11	Amp_1q44	0.941	1
8p-Del	Del_4q22.1	0.941	1
Amp_1q44	Amp_Xq28	0.941	1
Amp_3q26.31	Del_8p23.1	0.941	1
Amp_8q24.21	Del_7q34	0.941	1
Del_4q22.1	Del_15q21.1	0.941	1
Del_4q22.1	Del_20p12.1	0.941	1
Del_6p24.2	Del_20p12.1	0.941	1
Del_8p23.3	Del_11q25	0.941	1
ERBB2	MTOR	0.942	1
ERBB2	TRIM9	0.942	1
MTOR	ZNF750	0.942	1
ZNF750	Amp_21q22.13	0.942	1
17p-Del	Del_2q37.1	0.942	1
8p-Del	Amp_19q13.13	0.942	1
FBXW7	4p-Del	0.943	1
PTEN	Del_11p15.1	0.943	1
TCTE1	1p-Amp	0.943	1
TCTE1	Del_15q21.1	0.943	1
TRIM9	8p-Del	0.943	1
ZNF750	Del_2q37.1	0.943	1
1q-Amp	20p-Amp	0.943	1
1q-Amp	Del_11p15.1	0.943	1
4p-Del	Amp_13q22.1	0.943	1
4q-Del	Del_11q23.3	0.943	1
8p-Del	Del_3p14.2	0.943	1
Amp_11q22.1	Amp_21q22.13	0.943	1
Amp_13q34	Del_11p15.1	0.943	1
Del_6p24.2	Del_11q23.3	0.943	1
EP300	PTEN	0.944	1
EP300	5p-Amp	0.944	1
EP300	Amp_Xq28	0.944	1
ERBB2	10q-Del	0.944	1
ERBB2	Amp_16p13.13	0.944	1
NFE2L2	Amp_13q34	0.944	1
NFE2L2	Del_22q13.32	0.944	1
ZNF750	10q-Del	0.944	1
20p-Amp	Amp_16p13.13	0.944	1
5p-Amp	Amp_2p24.3	0.944	1
5p-Amp	Amp_3q28	0.944	1
5p-Amp	Del_15q21.1	0.944	1
11p-Del	Del_20p12.1	0.944	1
18q-Del	Del_5q12.1	0.944	1
Amp_2p24.3	Amp_6p21.33	0.944	1
Amp_2p24.3	Del_2q22.1	0.944	1
Amp_6p21.33	Amp_17q12	0.944	1
Amp_6p21.33	Del_1p36.23	0.944	1
Amp_17q12	Del_2q22.1	0.944	1
Amp_19q13.13	Amp_20q11.21	0.944	1
Amp_21q22.13	Del_17p12	0.944	1
Amp_Xq28	Del_1p36.23	0.944	1
Del_1p36.23	Del_2q22.1	0.944	1
Del_8p23.3	Del_15q21.1	0.944	1
Del_18q21.2	Del_22q13.32	0.944	1
ANKRD12	20q-Amp	0.945	1
ARID1A	20q-Amp	0.945	1
ARID1A	Del_6q26	0.945	1
CASP8	EP300	0.945	1
EP300	C12orf43	0.945	1
EP300	USP28	0.945	1
EP300	Del_19q13.33	0.945	1
KRAS	Amp_8q24.21	0.945	1
C12orf43	Amp_2p24.3	0.945	1
C12orf43	Del_18q21.2	0.945	1
FAT2	Amp_8q24.21	0.945	1
LIN9	20q-Amp	0.945	1
LIN9	Del_4q35.2	0.945	1
MED1	Amp_8q24.21	0.945	1
SEMA4B	Del_2q37.1	0.945	1
SMAD4	Del_4q35.2	0.945	1
USP28	Amp_2p24.3	0.945	1
USP28	Del_18q21.2	0.945	1
8q-Amp	Amp_5p15.33	0.945	1
19p-Del	Del_2q37.1	0.945	1
22q-Del	Del_18q21.2	0.945	1
5q-Del	Amp_5p15.33	0.945	1
Xp-Del	Del_2q37.1	0.945	1
Amp_5p15.33	Del_17q25.3	0.945	1
Amp_11p12	Del_4q35.2	0.945	1
Amp_11p12	Del_13q12.11	0.945	1
Amp_19q13.13	Del_1p36.23	0.945	1
Del_18q21.2	Del_19q13.33	0.945	1
ERBB3	19p-Del	0.946	1
ERBB3	Del_1p13.2	0.946	1
HLA-B	SEMA4B	0.946	1
FAT2	Del_Xp11.3	0.946	1
MED1	19p-Del	0.946	1
SEMA4B	Amp_11q13.3	0.946	1
20q-Amp	Del_5q35.2	0.946	1
3q-Amp	Amp_2p24.3	0.946	1
19p-Del	Amp_2q33.1	0.946	1
19p-Del	Amp_11q13.3	0.946	1
Amp_2q33.1	Del_1p13.2	0.946	1
Amp_2q33.1	Del_Xp11.3	0.946	1
Amp_8q24.21	Amp_13q22.1	0.946	1
Amp_11q13.3	Del_1p13.2	0.946	1
Del_5q12.1	Del_8p23.3	0.946	1
Del_11q25	Del_20p12.1	0.946	1
ARID1A	Amp_20q11.21	0.947	1
HLA-B	Del_20p12.1	0.947	1
KRAS	Del_20p12.1	0.947	1
ZNF750	1q-Amp	0.947	1
Amp_11q13.3	Del_20p12.1	0.947	1
Del_10q23.31	Del_17q25.3	0.947	1
ARID1A	Del_16q11.2	0.948	1
ARID1A	Del_16q23.1	0.948	1
STK11	Xp-Del	0.948	1
STK11	Del_Xq21.33	0.948	1
NHS	11q-Del	0.948	1
NHS	Del_8p23.3	0.948	1
TCTE1	Xp-Del	0.948	1
TCTE1	Del_Xq21.33	0.948	1
ZNF750	Amp_1q21.3	0.948	1
5p-Amp	Amp_17q12	0.948	1
11p-Del	Amp_2q33.1	0.948	1
Xp-Del	Amp_1q21.3	0.948	1
Amp_5p15.33	Amp_15q26.1	0.948	1
Amp_7p11.2	Del_4q21.3	0.948	1
Amp_15q26.1	Del_4q21.3	0.948	1
Del_1p36.23	Del_8p23.3	0.948	1
PIK3CA	ZNF578	0.949	1
ZNF578	1q-Amp	0.949	1
LIN9	1q-Amp	0.949	1
LIN9	17p-Del	0.949	1
Amp_1q21.3	Del_Xp11.3	0.949	1
Amp_2p24.3	Del_4q21.3	0.949	1
Amp_2p24.3	Del_16q11.2	0.949	1
Amp_3q26.31	Amp_5p15.33	0.949	1
Amp_20q11.21	Del_4q21.3	0.949	1
Amp_20q11.21	Del_16q11.2	0.949	1
Amp_21q22.13	Del_7q34	0.949	1
Del_11q25	Del_13q14.2	0.949	1
HLA-A	STK11	0.95	1
KRAS	PIK3CA	0.95	1
PTEN	STK11	0.95	1
PTPRC	Del_8p23.1	0.95	1
STK11	Del_22q13.32	0.95	1
TCTE1	Amp_13q34	0.95	1
TCTE1	Amp_Xq28	0.95	1
TCTE1	Del_2q22.1	0.95	1
TCTE1	Del_22q13.32	0.95	1
USP28	Del_4q22.1	0.95	1
8q-Amp	Amp_9p24.1	0.95	1
5q-Del	6q-Del	0.95	1
5q-Del	Amp_17q25.1	0.95	1
Amp_1p31.3	Amp_17q25.1	0.95	1
Amp_3q28	Del_6p24.2	0.95	1
Amp_8q24.21	Del_13q14.2	0.95	1
Amp_9p24.1	Amp_17q25.1	0.95	1
Amp_9p24.1	Del_13q14.2	0.95	1
Del_8p23.1	Del_19q13.33	0.95	1
Del_13q14.2	Del_17q25.3	0.95	1
KRAS	Del_17p12	0.951	1
SEMA4B	Del_11q25	0.951	1
1p-Amp	Amp_13q22.1	0.951	1
20q-Amp	Amp_16p13.13	0.951	1
10q-Del	Del_6q26	0.951	1
13q-Del	3p-Del	0.951	1
13q-Del	Del_4q35.2	0.951	1
13q-Del	Del_6q26	0.951	1
13q-Del	Del_15q21.1	0.951	1
18q-Del	Del_15q21.1	0.951	1
19p-Del	Amp_19q13.13	0.951	1
Amp_2q33.1	Del_17p12	0.951	1
Amp_13q22.1	Del_4q35.2	0.951	1
Amp_13q22.1	Del_6q26	0.951	1
Amp_19q13.13	Del_1p13.2	0.951	1
CASP8	MTOR	0.952	1
ERBB2	Del_17q25.3	0.952	1
FBXW7	Del_5q35.2	0.952	1
MAPK1	TRIM9	0.952	1
MTOR	RB1	0.952	1
MTOR	Del_19q13.33	0.952	1
NFE2L2	Del_5q12.1	0.952	1
RB1	Amp_21q22.13	0.952	1
RB1	Del_6p24.2	0.952	1
TP53	Amp_21q22.13	0.952	1
TP53	Del_4q22.1	0.952	1
ZNF750	Amp_1p31.3	0.952	1
ZNF750	Amp_9p24.1	0.952	1
20p-Amp	8p-Del	0.952	1
5p-Amp	Amp_3q26.31	0.952	1
5p-Amp	Amp_20q11.21	0.952	1
13q-Del	Amp_1q44	0.952	1
13q-Del	Del_17p12	0.952	1
18q-Del	Amp_11q22.1	0.952	1
18q-Del	Del_5q35.2	0.952	1
22q-Del	4q-Del	0.952	1
4q-Del	Del_2q37.1	0.952	1
4q-Del	Del_19q13.33	0.952	1
Amp_1q21.3	Amp_20q11.21	0.952	1
Amp_5p15.33	Amp_11p12	0.952	1
Amp_11q22.1	Amp_13q22.1	0.952	1
Amp_17q12	Del_5q12.1	0.952	1
Amp_20q11.21	Del_8p23.3	0.952	1
Amp_21q22.13	Del_19q13.33	0.952	1
Del_4q22.1	Del_19q13.33	0.952	1
ANKRD12	NFE2L2	0.953	1
ARID1A	NFE2L2	0.953	1
ARID1A	NHS	0.953	1
ARID1A	Del_1p36.23	0.953	1
ERBB2	Del_11p15.1	0.953	1
NFE2L2	Amp_15q26.1	0.953	1
STK11	11q-Del	0.953	1
ZNF578	Amp_17q12	0.953	1
IDS	NHS	0.953	1
IDS	Del_1p36.23	0.953	1
LIN9	Amp_17q12	0.953	1
LIN9	Del_1p36.23	0.953	1
NHS	SMAD4	0.953	1
NHS	Amp_15q26.1	0.953	1
SMAD4	Amp_17q12	0.953	1
TCTE1	5p-Amp	0.953	1
ZNF750	Del_11p15.1	0.953	1
Amp_8q24.21	Amp_15q26.1	0.953	1
Del_6p24.2	Del_11p15.1	0.953	1
CASP8	Del_11q25	0.954	1
ZNF578	Del_11p15.1	0.954	1
IDS	Del_11p15.1	0.954	1
10q-Del	Del_11q25	0.954	1
17p-Del	8p-Del	0.954	1
17p-Del	Amp_11q22.1	0.954	1
3q-Del	Amp_19q13.13	0.954	1
Del_4q35.2	Del_11q23.3	0.954	1
Del_8p23.1	Del_16q11.2	0.954	1
Del_11q25	Del_19q13.33	0.954	1
Del_13q14.2	Del_16q11.2	0.954	1
C3orf70	FBXW7	0.955	1
ERBB2	Del_1p13.2	0.955	1
ERBB2	Del_Xp11.3	0.955	1
BAP1	10q-Del	0.955	1
BAP1	Amp_13q22.1	0.955	1
C12orf43	18q-Del	0.955	1
C12orf43	Amp_16p13.13	0.955	1
TRIM9	Del_16q23.1	0.955	1
USP28	10q-Del	0.955	1
USP28	13q-Del	0.955	1
USP28	18q-Del	0.955	1
20p-Amp	Amp_1p31.3	0.955	1
3q-Amp	Amp_9p24.1	0.955	1
22q-Del	4p-Del	0.955	1
4p-Del	Del_19q13.33	0.955	1
6q-Del	Del_5q12.1	0.955	1
Xp-Del	Amp_20q11.21	0.955	1
Amp_3q26.31	Del_6p24.2	0.955	1
Amp_5p15.33	Amp_20q11.21	0.955	1
Amp_20q11.21	Del_Xq21.33	0.955	1
Amp_21q22.13	Del_4q21.3	0.955	1
ARID1A	Del_18q21.2	0.956	1
EP300	Del_14q32.31	0.956	1
HLA-B	Amp_13q34	0.956	1
KRAS	PTEN	0.956	1
MUC4	TCTE1	0.956	1
STK11	Amp_15q26.1	0.956	1
MED1	Amp_13q34	0.956	1
20p-Amp	19p-Del	0.956	1
20p-Amp	Del_Xp11.3	0.956	1
Amp_6p21.33	Amp_11q13.3	0.956	1
Del_11q23.3	Del_20p12.1	0.956	1
EP300	11p-Del	0.957	1
HLA-A	11p-Del	0.957	1
SEMA4B	Del_11q23.3	0.957	1
TRIM9	Del_8p23.3	0.957	1
11p-Del	Del_2q22.1	0.957	1
11q-Del	Del_2q37.1	0.957	1
4p-Del	Del_17q25.3	0.957	1
Amp_21q22.13	Del_8p23.3	0.957	1
Del_8p23.3	Del_11q23.3	0.957	1
C3orf70	Xp-Del	0.958	1
C3orf70	Del_Xq21.33	0.958	1
PIK3CA	Del_15q21.1	0.958	1
BAP1	Xp-Del	0.958	1
BAP1	Del_Xq21.33	0.958	1
C12orf43	Del_Xq21.33	0.958	1
RAB35	Xp-Del	0.958	1
RAB35	Del_Xq21.33	0.958	1
USP28	Xp-Del	0.958	1
USP28	Del_Xq21.33	0.958	1
20p-Amp	3q-Del	0.958	1
5p-Amp	Del_5q35.2	0.958	1
10q-Del	17p-Del	0.958	1
11q-Del	4q-Del	0.958	1
11q-Del	Del_4q22.1	0.958	1
13q-Del	17p-Del	0.958	1
3q-Del	Del_5q12.1	0.958	1
Amp_1q44	Amp_15q26.1	0.958	1
Amp_7p11.2	Del_11p15.1	0.958	1
CASP8	13q-Del	0.959	1
NFE2L2	Del_5q35.2	0.959	1
RB1	10q-Del	0.959	1
RB1	Amp_16p13.13	0.959	1
TP53	Amp_13q22.1	0.959	1
TP53	Amp_16p13.13	0.959	1
C12orf43	Del_2q37.1	0.959	1
NHS	8p-Del	0.959	1
USP28	Del_2q37.1	0.959	1
10q-Del	22q-Del	0.959	1
11p-Del	Del_10q23.31	0.959	1
18q-Del	22q-Del	0.959	1
Xp-Del	Del_17p12	0.959	1
Amp_1q44	Amp_19q13.13	0.959	1
Del_3p14.2	Del_10q23.31	0.959	1
Del_3p14.2	Del_11q23.3	0.959	1
Del_4q22.1	Del_16q11.2	0.959	1
Del_6p24.2	Del_16q23.1	0.959	1
Del_17p12	Del_Xq21.33	0.959	1
ANKRD12	ERBB3	0.96	1
ANKRD12	HLA-B	0.96	1
ANKRD12	FAT2	0.96	1
ANKRD12	MED1	0.96	1
C3orf70	8q-Amp	0.96	1
C3orf70	Amp_1p31.3	0.96	1
CASP8	Del_11q23.3	0.96	1
ERBB2	1p-Amp	0.96	1
ERBB2	Del_15q21.1	0.96	1
ERBB3	IDS	0.96	1
ERBB3	SMAD4	0.96	1
ERBB3	Amp_19q13.13	0.96	1
HLA-B	IDS	0.96	1
HLA-B	LIN9	0.96	1
HLA-B	Amp_11p12	0.96	1
HLA-B	Amp_19q13.13	0.96	1
KRAS	LIN9	0.96	1
PTPRC	20q-Amp	0.96	1
RB1	20q-Amp	0.96	1
ZNF578	MED1	0.96	1
C12orf43	8q-Amp	0.96	1
C12orf43	6q-Del	0.96	1
C12orf43	Amp_1p31.3	0.96	1
FAT2	IDS	0.96	1
FAT2	LIN9	0.96	1
IDS	Amp_2q33.1	0.96	1
LIN9	MED1	0.96	1
LIN9	Amp_11q13.3	0.96	1
MED1	Amp_19q13.13	0.96	1
RAB35	Amp_1p31.3	0.96	1
RAB35	Amp_9p24.1	0.96	1
RAB35	Del_17q25.3	0.96	1
SMAD4	Amp_11q13.3	0.96	1
USP28	8q-Amp	0.96	1
USP28	5q-Del	0.96	1
USP28	Amp_9p24.1	0.96	1
USP28	Del_17q25.3	0.96	1
ZNF750	1p-Amp	0.96	1
11p-Del	Del_8p23.3	0.96	1
6q-Del	Del_20p12.1	0.96	1
Amp_2p24.3	Del_11q25	0.96	1
Amp_2q33.1	Amp_11p12	0.96	1
Amp_2q33.1	Amp_19q13.13	0.96	1
Amp_3q26.31	Amp_7p11.2	0.96	1
Amp_3q26.31	Amp_15q26.1	0.96	1
Amp_5p15.33	Del_4q35.2	0.96	1
Amp_13q34	Del_8p23.3	0.96	1
Del_4q35.2	Del_19q13.33	0.96	1
Del_8p23.3	Del_22q13.32	0.96	1
Del_11q23.3	Del_19q13.33	0.96	1
Del_11q25	Del_18q21.2	0.96	1
Del_15q21.1	Del_17q25.3	0.96	1
FBXW7	HLA-A	0.961	1
FBXW7	Amp_Xq28	0.961	1
C12orf43	Amp_1q21.3	0.961	1
RAB35	Amp_1q21.3	0.961	1
TRIM9	Amp_2p24.3	0.961	1
TRIM9	Del_18q21.2	0.961	1
10q-Del	Del_22q13.32	0.961	1
13q-Del	Del_2q22.1	0.961	1
18q-Del	Del_22q13.32	0.961	1
19p-Del	Amp_11q22.1	0.961	1
19p-Del	Del_5q35.2	0.961	1
3q-Del	Del_5q35.2	0.961	1
8p-Del	Del_1p13.2	0.961	1
Amp_1p31.3	Amp_8q24.21	0.961	1
Amp_1q44	Amp_3q26.31	0.961	1
Amp_6p21.33	Amp_16p13.13	0.961	1
Amp_11q22.1	Del_1p13.2	0.961	1
Amp_11q22.1	Del_Xp11.3	0.961	1
Amp_20q11.21	Del_Xp11.3	0.961	1
MTOR	TRIM9	0.962	1
ZNF578	11p-Del	0.962	1
IDS	11p-Del	0.962	1
20q-Amp	5p-Amp	0.962	1
11p-Del	Amp_11p12	0.962	1
Amp_1p31.3	Amp_3q28	0.962	1
Amp_1q21.3	Amp_8q24.21	0.962	1
Amp_1q44	Del_16q23.1	0.962	1
Amp_2p24.3	Amp_20q11.21	0.962	1
Amp_3q28	Amp_9p24.1	0.962	1
Del_11q23.3	Del_13q14.2	0.962	1
Del_16q23.1	Del_17p12	0.962	1
ARID1A	Amp_2q33.1	0.963	1
CASP8	SEMA4B	0.963	1
ERBB2	11p-Del	0.963	1
ERBB3	Del_14q32.31	0.963	1
KRAS	Del_14q32.31	0.963	1
MAPK1	Del_1p13.2	0.963	1
PTPRC	19p-Del	0.963	1
RB1	SEMA4B	0.963	1
TP53	SEMA4B	0.963	1
FAT2	Amp_15q26.1	0.963	1
MED1	Del_14q32.31	0.963	1
NHS	Del_8p23.1	0.963	1
SEMA4B	22q-Del	0.963	1
ZNF750	11p-Del	0.963	1
8q-Amp	Del_4q35.2	0.963	1
8q-Amp	Del_6q26	0.963	1
18q-Del	Del_11q23.3	0.963	1
4q-Del	Amp_7p11.2	0.963	1
5q-Del	Amp_11q22.1	0.963	1
6q-Del	Del_13q12.11	0.963	1
8p-Del	Del_17q25.3	0.963	1
Amp_2q33.1	Del_14q32.31	0.963	1
Amp_7p11.2	Del_4q22.1	0.963	1
Amp_7p11.2	Del_6p24.2	0.963	1
Amp_11q13.3	Amp_15q26.1	0.963	1
Amp_11q13.3	Del_14q32.31	0.963	1
Amp_15q26.1	Del_4q22.1	0.963	1
Amp_17q12	Del_2q37.1	0.963	1
Del_2q37.1	Del_17p12	0.963	1
Del_3p14.2	Del_20p12.1	0.963	1
Del_11p15.1	Del_13q14.2	0.963	1
Del_19q13.33	Del_Xp11.3	0.963	1
C3orf70	Del_15q21.1	0.964	1
RB1	1q-Amp	0.964	1
RB1	17p-Del	0.964	1
C12orf43	1p-Amp	0.964	1
C12orf43	Del_20p12.1	0.964	1
RAB35	1p-Amp	0.964	1
USP28	Del_20p12.1	0.964	1
1q-Amp	Amp_3q28	0.964	1
3q-Amp	Del_6p24.2	0.964	1
18q-Del	Del_11p15.1	0.964	1
19p-Del	Amp_8q24.21	0.964	1
Amp_13q22.1	Del_11p15.1	0.964	1
CASP8	Amp_1p31.3	0.965	1
EP300	Del_13q14.2	0.965	1
ERBB2	Amp_8q24.21	0.965	1
MAPK1	Amp_1p31.3	0.965	1
MUC4	PTEN	0.965	1
MUC4	5p-Amp	0.965	1
MUC4	Del_2q22.1	0.965	1
RB1	Amp_1p31.3	0.965	1
RB1	Amp_9p24.1	0.965	1
RB1	Amp_17q25.1	0.965	1
TP53	Amp_1p31.3	0.965	1
FAT2	20p-Amp	0.965	1
FAT2	Del_8p23.3	0.965	1
20p-Amp	Amp_2q33.1	0.965	1
3q-Amp	Amp_15q26.1	0.965	1
5p-Amp	Xp-Del	0.965	1
4p-Del	Amp_19q13.13	0.965	1
6q-Del	Amp_3q26.31	0.965	1
Xp-Del	Del_8p23.3	0.965	1
Amp_1p31.3	Amp_3q26.31	0.965	1
Amp_3q26.31	Amp_9p24.1	0.965	1
Amp_11q13.3	Del_5q12.1	0.965	1
Del_8p23.3	Del_Xq21.33	0.965	1
PTEN	ZNF750	0.966	1
STK11	4p-Del	0.966	1
18q-Del	Del_2q37.1	0.966	1
4q-Del	Amp_21q22.13	0.966	1
6q-Del	Del_17p12	0.966	1
Amp_21q22.13	Del_4q22.1	0.966	1
Del_5q12.1	Del_20p12.1	0.966	1
Del_7q34	Del_11q25	0.966	1
Del_7q34	Del_Xp11.3	0.966	1
Del_17p12	Del_17q25.3	0.966	1
ANKRD12	ERBB2	0.967	1
ANKRD12	ZNF750	0.967	1
ERBB2	LIN9	0.967	1
MUC4	Del_Xq21.33	0.967	1
STK11	NHS	0.967	1
SMAD4	ZNF750	0.967	1
20q-Amp	Del_4q21.3	0.967	1
20q-Amp	Del_16q11.2	0.967	1
4q-Del	Amp_2p24.3	0.967	1
Amp_2p24.3	Del_4q22.1	0.967	1
Amp_6p21.33	Del_11q25	0.967	1
Del_1p13.2	Del_17p12	0.967	1
Del_13q12.11	Del_16q23.1	0.967	1
Del_15q21.1	Del_20p12.1	0.967	1
Del_17p12	Del_Xp11.3	0.967	1
C3orf70	PTEN	0.968	1
C3orf70	Amp_6p21.33	0.968	1
C3orf70	Amp_Xq28	0.968	1
ERBB2	Del_17p12	0.968	1
HLA-A	RAB35	0.968	1
HLA-A	USP28	0.968	1
HLA-A	Amp_1p31.3	0.968	1
HLA-A	Amp_9p24.1	0.968	1
HLA-A	Del_17q25.3	0.968	1
PTEN	BAP1	0.968	1
PTEN	RAB35	0.968	1
PTEN	USP28	0.968	1
BAP1	Del_2q22.1	0.968	1
C12orf43	Amp_20q11.21	0.968	1
RAB35	Del_2q22.1	0.968	1
USP28	Amp_6p21.33	0.968	1
USP28	Del_22q13.32	0.968	1
1p-Amp	Amp_20q11.21	0.968	1
8q-Amp	17p-Del	0.968	1
8q-Amp	Amp_Xq28	0.968	1
11q-Del	Del_7q34	0.968	1
3q-Del	Del_4q21.3	0.968	1
4p-Del	Del_1p36.23	0.968	1
Amp_6p21.33	Amp_9p24.1	0.968	1
Amp_13q34	Amp_17q25.1	0.968	1
Del_5q12.1	Del_8p23.1	0.968	1
Del_5q12.1	Del_13q14.2	0.968	1
Del_8p23.3	Del_17p12	0.968	1
ANKRD12	Del_10q23.31	0.969	1
ARID1A	FBXW7	0.969	1
ARID1A	18q-Del	0.969	1
ERBB3	MUC4	0.969	1
MUC4	Amp_2q33.1	0.969	1
IDS	Amp_19q13.13	0.969	1
LIN9	Amp_19q13.13	0.969	1
TCTE1	20q-Amp	0.969	1
TCTE1	3p-Del	0.969	1
1q-Amp	Amp_3q26.31	0.969	1
20p-Amp	Del_17p12	0.969	1
5p-Amp	Amp_13q22.1	0.969	1
8q-Amp	Del_7q34	0.969	1
10q-Del	11q-Del	0.969	1
11q-Del	13q-Del	0.969	1
13q-Del	Amp_15q26.1	0.969	1
3q-Del	Xp-Del	0.969	1
3q-Del	Del_Xq21.33	0.969	1
Amp_1q44	Amp_8q24.21	0.969	1
Amp_8q24.21	Del_4q35.2	0.969	1
Amp_8q24.21	Del_13q12.11	0.969	1
Amp_21q22.13	Del_13q14.2	0.969	1
CASP8	Del_15q21.1	0.97	1
EP300	4p-Del	0.97	1
EP300	Amp_19q13.13	0.97	1
MAPK1	1p-Amp	0.97	1
NFE2L2	NHS	0.97	1
PTPRC	Del_15q21.1	0.97	1
RB1	1p-Amp	0.97	1
TP53	1p-Amp	0.97	1
TP53	Del_20p12.1	0.97	1
MED1	Amp_11q22.1	0.97	1
MED1	Del_5q35.2	0.97	1
NHS	Del_16q11.2	0.97	1
SEMA4B	Del_4q21.3	0.97	1
SEMA4B	Del_16q11.2	0.97	1
1q-Amp	5p-Amp	0.97	1
11p-Del	Amp_5p15.33	0.97	1
17p-Del	Del_6q26	0.97	1
17p-Del	Del_8p23.3	0.97	1
22q-Del	Del_15q21.1	0.97	1
3p-Del	Del_2q37.1	0.97	1
Amp_1q44	Del_11q25	0.97	1
Amp_2q33.1	Amp_11q22.1	0.97	1
Amp_17q12	Del_1p36.23	0.97	1
Del_3p14.2	Del_11q25	0.97	1
Del_4q21.3	Del_Xp11.3	0.97	1
Del_10q23.31	Del_18q21.2	0.97	1
Del_15q21.1	Del_19q13.33	0.97	1
C3orf70	Amp_8q24.21	0.971	1
FBXW7	TRIM9	0.971	1
MTOR	10q-Del	0.971	1
PIK3CA	ZNF750	0.971	1
TP53	3q-Amp	0.971	1
TRIM9	18q-Del	0.971	1
TRIM9	Del_1p13.2	0.971	1
10q-Del	Amp_21q22.13	0.971	1
13q-Del	Amp_21q22.13	0.971	1
19p-Del	Amp_21q22.13	0.971	1
3q-Del	Amp_2p24.3	0.971	1
8p-Del	Del_20p12.1	0.971	1
Xp-Del	Del_8p23.1	0.971	1
Xp-Del	Del_13q14.2	0.971	1
Amp_9p24.1	Del_11q25	0.971	1
Amp_13q22.1	Amp_21q22.13	0.971	1
Amp_16p13.13	Amp_21q22.13	0.971	1
Amp_21q22.13	Del_Xp11.3	0.971	1
Del_8p23.1	Del_Xq21.33	0.971	1
Del_11q25	Del_17q25.3	0.971	1
Del_13q14.2	Del_Xq21.33	0.971	1
ARID1A	C12orf43	0.972	1
ARID1A	RAB35	0.972	1
ARID1A	USP28	0.972	1
ARID1A	ZNF750	0.972	1
C3orf70	Del_14q32.31	0.972	1
CASP8	Amp_3q28	0.972	1
ERBB2	Amp_19q13.13	0.972	1
ERBB3	TCTE1	0.972	1
KRAS	STK11	0.972	1
MAPK1	Amp_3q28	0.972	1
NFE2L2	3p-Del	0.972	1
RB1	Amp_3q28	0.972	1
STK11	17p-Del	0.972	1
TP53	Amp_3q28	0.972	1
ZNF578	Del_2q37.1	0.972	1
BAP1	Amp_7p11.2	0.972	1
MED1	TCTE1	0.972	1
NHS	20q-Amp	0.972	1
TCTE1	Amp_11q13.3	0.972	1
USP28	Amp_15q26.1	0.972	1
USP28	Del_14q32.31	0.972	1
5p-Amp	Amp_15q26.1	0.972	1
11q-Del	Del_3p14.2	0.972	1
17p-Del	Del_4q21.3	0.972	1
4p-Del	Amp_21q22.13	0.972	1
Amp_1q44	Amp_2p24.3	0.972	1
Amp_3q28	Del_19q13.33	0.972	1
Amp_5p15.33	Del_4q21.3	0.972	1
Amp_8q24.21	Del_15q21.1	0.972	1
Amp_11p12	Del_2q37.1	0.972	1
Del_1p36.23	Del_4q35.2	0.972	1
ANKRD12	CASP8	0.973	1
ANKRD12	RB1	0.973	1
MAPK1	LIN9	0.973	1
MAPK1	SMAD4	0.973	1
PTPRC	SMAD4	0.973	1
RB1	SMAD4	0.973	1
TP53	ZNF578	0.973	1
TP53	IDS	0.973	1
TP53	LIN9	0.973	1
TP53	SMAD4	0.973	1
C12orf43	Amp_1q44	0.973	1
RAB35	Amp_1q44	0.973	1
SMAD4	22q-Del	0.973	1
USP28	Del_17p12	0.973	1
13q-Del	Amp_5p15.33	0.973	1
3q-Del	4q-Del	0.973	1
3q-Del	Del_4q22.1	0.973	1
4p-Del	Del_11q23.3	0.973	1
4p-Del	Del_Xq21.33	0.973	1
Amp_5p15.33	Del_3p14.2	0.973	1
Amp_6p21.33	Del_11q23.3	0.973	1
Amp_11p12	Del_5q12.1	0.973	1
Amp_11p12	Del_19q13.33	0.973	1
Amp_13q34	Del_8p23.1	0.973	1
Amp_20q11.21	Del_4q22.1	0.973	1
Amp_20q11.21	Del_6p24.2	0.973	1
Del_2q22.1	Del_11q23.3	0.973	1
CASP8	Amp_3q26.31	0.974	1
EP300	13q-Del	0.974	1
EP300	Amp_13q22.1	0.974	1
ERBB2	Amp_5p15.33	0.974	1
RB1	Amp_3q26.31	0.974	1
1p-Amp	Amp_6p21.33	0.974	1
1p-Amp	Amp_Xq28	0.974	1
20q-Amp	Xp-Del	0.974	1
11p-Del	8p-Del	0.974	1
19p-Del	Amp_2p24.3	0.974	1
19p-Del	Del_18q21.2	0.974	1
3p-Del	Del_Xq21.33	0.974	1
Xp-Del	Del_4q35.2	0.974	1
Xp-Del	Del_13q12.11	0.974	1
Amp_1q21.3	Amp_11p12	0.974	1
Amp_2p24.3	Amp_13q22.1	0.974	1
Amp_3q26.31	Del_19q13.33	0.974	1
Amp_6p21.33	Del_15q21.1	0.974	1
Del_1p13.2	Del_18q21.2	0.974	1
Del_15q21.1	Del_22q13.32	0.974	1
ARID1A	MUC4	0.975	1
CASP8	Amp_6p21.33	0.975	1
EP300	NFE2L2	0.975	1
EP300	Del_13q12.11	0.975	1
HLA-A	PTPRC	0.975	1
MAPK1	Del_22q13.32	0.975	1
PTEN	TP53	0.975	1
RB1	Amp_13q34	0.975	1
TP53	Amp_13q34	0.975	1
TRIM9	Del_17q25.3	0.975	1
20q-Amp	Amp_1q21.3	0.975	1
20q-Amp	Amp_1q44	0.975	1
20q-Amp	Amp_2p24.3	0.975	1
20q-Amp	Amp_21q22.13	0.975	1
8q-Amp	Amp_21q22.13	0.975	1
10q-Del	11p-Del	0.975	1
11p-Del	Del_19q13.33	0.975	1
4q-Del	Del_11q25	0.975	1
Amp_1p31.3	Amp_15q26.1	0.975	1
Amp_2p24.3	Amp_17q12	0.975	1
Amp_3q28	Amp_16p13.13	0.975	1
Amp_3q28	Del_4q35.2	0.975	1
Amp_6p21.33	Del_19q13.33	0.975	1
Amp_9p24.1	Amp_21q22.13	0.975	1
Amp_9p24.1	Del_16q11.2	0.975	1
Amp_13q34	Del_19q13.33	0.975	1
Amp_17q12	Del_18q21.2	0.975	1
Amp_17q25.1	Amp_21q22.13	0.975	1
Amp_Xq28	Del_19q13.33	0.975	1
Del_1p36.23	Del_18q21.2	0.975	1
Del_5q35.2	Del_13q14.2	0.975	1
Del_6q26	Del_18q21.2	0.975	1
Del_19q13.33	Del_22q13.32	0.975	1
ERBB3	Amp_17q12	0.976	1
ERBB3	Del_1p36.23	0.976	1
FBXW7	3q-Del	0.976	1
HLA-B	NHS	0.976	1
KRAS	NHS	0.976	1
FAT2	Del_8p23.1	0.976	1
IDS	8p-Del	0.976	1
SMAD4	8p-Del	0.976	1
1q-Amp	Amp_8q24.21	0.976	1
20p-Amp	Amp_1q21.3	0.976	1
20p-Amp	Amp_2p24.3	0.976	1
11q-Del	Del_4q21.3	0.976	1
17p-Del	Xp-Del	0.976	1
17p-Del	Amp_8q24.21	0.976	1
Amp_11p12	Del_5q35.2	0.976	1
Amp_13q34	Del_3p14.2	0.976	1
Del_15q21.1	Del_17p12	0.976	1
STK11	ZNF750	0.977	1
NHS	Amp_20q11.21	0.977	1
SEMA4B	Del_4q22.1	0.977	1
TCTE1	ZNF750	0.977	1
8q-Amp	Del_11q23.3	0.977	1
11p-Del	Del_8p23.1	0.977	1
17p-Del	Del_10q23.31	0.977	1
19p-Del	Del_6p24.2	0.977	1
Amp_7p11.2	Del_10q23.31	0.977	1
Amp_8q24.21	Del_4q22.1	0.977	1
Amp_17q12	Amp_20q11.21	0.977	1
Amp_19q13.13	Del_4q22.1	0.977	1
Del_2q37.1	Del_17q25.3	0.977	1
Del_11q23.3	Del_17q25.3	0.977	1
C3orf70	5p-Amp	0.978	1
C3orf70	11q-Del	0.978	1
EP300	PIK3CA	0.978	1
ERBB2	5p-Amp	0.978	1
KRAS	Del_16q23.1	0.978	1
MUC4	SEMA4B	0.978	1
NFE2L2	PIK3CA	0.978	1
PIK3CA	NHS	0.978	1
FAT2	Del_16q11.2	0.978	1
SEMA4B	Del_1p13.2	0.978	1
SEMA4B	Del_Xp11.3	0.978	1
USP28	5p-Amp	0.978	1
USP28	Del_8p23.3	0.978	1
1q-Amp	Amp_21q22.13	0.978	1
5p-Amp	Amp_1p31.3	0.978	1
11q-Del	Del_8p23.1	0.978	1
19p-Del	Del_1p13.2	0.978	1
Amp_2p24.3	Del_2q37.1	0.978	1
Amp_3q26.31	Amp_16p13.13	0.978	1
Amp_11q22.1	Del_2q22.1	0.978	1
Del_5q12.1	Del_6q26	0.978	1
Del_8p23.3	Del_13q14.2	0.978	1
Del_8p23.1	Del_11q25	0.978	1
Del_11p15.1	Del_Xq21.33	0.978	1
MTOR	ZNF578	0.979	1
MTOR	IDS	0.979	1
MTOR	Amp_11p12	0.979	1
MUC4	Amp_5p15.33	0.979	1
NFE2L2	Del_6p24.2	0.979	1
STK11	11p-Del	0.979	1
TP53	Amp_8q24.21	0.979	1
ZNF578	TRIM9	0.979	1
MED1	4p-Del	0.979	1
TRIM9	Del_15q21.1	0.979	1
3q-Amp	5p-Amp	0.979	1
13q-Del	Del_6p24.2	0.979	1
3q-Del	5q-Del	0.979	1
3q-Del	Amp_17q25.1	0.979	1
4q-Del	Del_1p36.23	0.979	1
Xp-Del	Del_Xq21.33	0.979	1
Amp_3q26.31	Del_8p23.3	0.979	1
Amp_5p15.33	Del_11p15.1	0.979	1
Amp_11p12	Amp_21q22.13	0.979	1
Amp_11p12	Del_7q34	0.979	1
Amp_13q22.1	Del_4q22.1	0.979	1
Amp_16p13.13	Del_6p24.2	0.979	1
Amp_17q12	Del_6p24.2	0.979	1
Amp_21q22.13	Del_15q21.1	0.979	1
Del_5q12.1	Del_10q23.31	0.979	1
ARID1A	PTPRC	0.98	1
ARID1A	RB1	0.98	1
ARID1A	TP53	0.98	1
C3orf70	MUC4	0.98	1
C3orf70	NHS	0.98	1
C3orf70	Amp_17q12	0.98	1
EP300	8q-Amp	0.98	1
EP300	Amp_17q25.1	0.98	1
ERBB2	MUC4	0.98	1
FBXW7	Del_1p13.2	0.98	1
HLA-A	PTEN	0.98	1
MUC4	RAB35	0.98	1
MUC4	USP28	0.98	1
MUC4	Del_4q21.3	0.98	1
NFE2L2	USP28	0.98	1
PTPRC	Amp_15q26.1	0.98	1
TP53	Del_14q32.31	0.98	1
MED1	Amp_1q21.3	0.98	1
USP28	Amp_17q12	0.98	1
1p-Amp	Amp_15q26.1	0.98	1
13q-Del	Del_1p13.2	0.98	1
18q-Del	19p-Del	0.98	1
18q-Del	Del_1p13.2	0.98	1
22q-Del	Amp_15q26.1	0.98	1
22q-Del	Del_14q32.31	0.98	1
5q-Del	Del_18q21.2	0.98	1
6q-Del	Amp_2p24.3	0.98	1
6q-Del	Del_18q21.2	0.98	1
Amp_1q44	Amp_3q28	0.98	1
Amp_11q22.1	Del_2q37.1	0.98	1
Amp_13q22.1	Del_Xp11.3	0.98	1
Amp_15q26.1	Del_15q21.1	0.98	1
Amp_21q22.13	Del_11p15.1	0.98	1
Del_14q32.31	Del_19q13.33	0.98	1
ARID1A	20p-Amp	0.981	1
NFE2L2	Del_3p14.2	0.981	1
FAT2	20q-Amp	0.981	1
LIN9	Del_11q25	0.981	1
20p-Amp	4q-Del	0.981	1
10q-Del	Del_13q14.2	0.981	1
3p-Del	Amp_13q34	0.981	1
3p-Del	Del_2q22.1	0.981	1
Amp_1q21.3	Amp_3q28	0.981	1
Amp_11q13.3	Del_13q12.11	0.981	1
Amp_13q22.1	Del_13q14.2	0.981	1
Amp_19q13.13	Del_19q13.33	0.981	1
Del_2q22.1	Del_13q12.11	0.981	1
Del_4q22.1	Del_11q23.3	0.981	1
Del_4q35.2	Del_22q13.32	0.981	1
Del_10q23.31	Del_19q13.33	0.981	1
CASP8	TCTE1	0.982	1
EP300	HLA-B	0.982	1
ERBB2	Del_1p36.23	0.982	1
ERBB3	HLA-B	0.982	1
ERBB3	FAT2	0.982	1
ERBB3	MED1	0.982	1
ERBB3	Amp_2q33.1	0.982	1
KRAS	Del_18q21.2	0.982	1
PTPRC	TCTE1	0.982	1
STK11	22q-Del	0.982	1
TP53	TCTE1	0.982	1
ZNF578	Amp_8q24.21	0.982	1
FAT2	Amp_2q33.1	0.982	1
SEMA4B	Del_13q14.2	0.982	1
20q-Amp	Del_4q22.1	0.982	1
5p-Amp	Del_5q12.1	0.982	1
19p-Del	Del_8p23.1	0.982	1
3p-Del	Del_11q23.3	0.982	1
8p-Del	Del_11q25	0.982	1
Amp_2p24.3	Amp_2q33.1	0.982	1
Amp_2q33.1	Amp_11q13.3	0.982	1
Amp_2q33.1	Del_18q21.2	0.982	1
Amp_6p21.33	Amp_8q24.21	0.982	1
Amp_8q24.21	Amp_11p12	0.982	1
Amp_8q24.21	Del_11p15.1	0.982	1
Amp_11q13.3	Del_18q21.2	0.982	1
Amp_15q26.1	Del_8p23.1	0.982	1
Del_7q34	Del_13q14.2	0.982	1
Del_13q14.2	Del_Xp11.3	0.982	1
C3orf70	ERBB3	0.983	1
HLA-A	MTOR	0.983	1
HLA-A	3q-Del	0.983	1
HLA-B	C12orf43	0.983	1
HLA-B	USP28	0.983	1
NFE2L2	Amp_16p13.13	0.983	1
C12orf43	FAT2	0.983	1
C12orf43	MED1	0.983	1
C12orf43	Amp_2q33.1	0.983	1
LIN9	Del_11q23.3	0.983	1
LIN9	Del_17p12	0.983	1
MED1	USP28	0.983	1
SEMA4B	Del_17q25.3	0.983	1
TRIM9	Del_22q13.32	0.983	1
USP28	Amp_11q13.3	0.983	1
USP28	Del_8p23.1	0.983	1
5p-Amp	4p-Del	0.983	1
10q-Del	13q-Del	0.983	1
11q-Del	4p-Del	0.983	1
13q-Del	Del_10q23.31	0.983	1
18q-Del	Amp_17q12	0.983	1
18q-Del	Del_1p36.23	0.983	1
3q-Del	Amp_13q34	0.983	1
Amp_1p31.3	Amp_5p15.33	0.983	1
Amp_5p15.33	Amp_17q25.1	0.983	1
Amp_5p15.33	Del_Xp11.3	0.983	1
Amp_11p12	Del_17p12	0.983	1
Amp_13q34	Amp_21q22.13	0.983	1
Amp_21q22.13	Amp_Xq28	0.983	1
Del_2q37.1	Del_8p23.3	0.983	1
Del_8p23.3	Del_18q21.2	0.983	1
Del_10q23.31	Del_Xq21.33	0.983	1
ANKRD12	SEMA4B	0.984	1
ARID1A	PTEN	0.984	1
EP300	ZNF578	0.984	1
EP300	LIN9	0.984	1
RB1	20p-Amp	0.984	1
TP53	20p-Amp	0.984	1
IDS	SEMA4B	0.984	1
IDS	Del_1p13.2	0.984	1
LIN9	SEMA4B	0.984	1
SMAD4	Amp_2p24.3	0.984	1
SMAD4	Del_18q21.2	0.984	1
1p-Amp	Amp_2p24.3	0.984	1
10q-Del	4p-Del	0.984	1
11q-Del	Del_8p23.3	0.984	1
13q-Del	4p-Del	0.984	1
4p-Del	Del_13q12.11	0.984	1
8p-Del	Amp_7p11.2	0.984	1
Amp_2p24.3	Amp_11p12	0.984	1
Amp_2p24.3	Del_15q21.1	0.984	1
Amp_6p21.33	Amp_7p11.2	0.984	1
Amp_7p11.2	Amp_13q34	0.984	1
Amp_11p12	Del_18q21.2	0.984	1
Amp_13q34	Amp_15q26.1	0.984	1
Del_4q21.3	Del_11q23.3	0.984	1
Del_7q34	Del_17p12	0.984	1
Del_10q23.31	Del_11q25	0.984	1
Del_11q23.3	Del_16q11.2	0.984	1
Del_17p12	Del_22q13.32	0.984	1
PIK3CA	TP53	0.985	1
TCTE1	20p-Amp	0.985	1
20q-Amp	Amp_5p15.33	0.985	1
5p-Amp	Amp_8q24.21	0.985	1
11q-Del	Del_20p12.1	0.985	1
17p-Del	Del_6p24.2	0.985	1
4p-Del	Del_11q25	0.985	1
Amp_1q21.3	Amp_3q26.31	0.985	1
Amp_1q44	Amp_20q11.21	0.985	1
Amp_2q33.1	Del_4q22.1	0.985	1
Amp_7p11.2	Del_11q23.3	0.985	1
Amp_8q24.21	Del_8p23.3	0.985	1
Del_5q12.1	Del_Xq21.33	0.985	1
Del_8p23.3	Del_20p12.1	0.985	1
Del_8p23.1	Del_11q23.3	0.985	1
Del_13q14.2	Del_17p12	0.985	1
C3orf70	ERBB2	0.986	1
ERBB3	Amp_20q11.21	0.986	1
FBXW7	Del_5q12.1	0.986	1
PTPRC	Amp_11q22.1	0.986	1
BAP1	Del_13q12.11	0.986	1
C12orf43	ZNF750	0.986	1
C12orf43	Del_4q35.2	0.986	1
IDS	Del_4q22.1	0.986	1
NHS	Amp_9p24.1	0.986	1
RAB35	ZNF750	0.986	1
SEMA4B	Del_15q21.1	0.986	1
SEMA4B	Del_20p12.1	0.986	1
USP28	ZNF750	0.986	1
ZNF750	Amp_2q33.1	0.986	1
20q-Amp	19p-Del	0.986	1
20q-Amp	Del_Xp11.3	0.986	1
3q-Amp	Amp_17q25.1	0.986	1
10q-Del	Del_5q12.1	0.986	1
10q-Del	Del_17p12	0.986	1
11p-Del	Del_4q35.2	0.986	1
11p-Del	Del_13q12.11	0.986	1
3q-Del	Amp_15q26.1	0.986	1
4q-Del	Amp_11p12	0.986	1
8p-Del	Del_11q23.3	0.986	1
8p-Del	Del_Xq21.33	0.986	1
Amp_1q44	Amp_13q22.1	0.986	1
Amp_11p12	Del_4q22.1	0.986	1
Amp_11q22.1	Del_11q23.3	0.986	1
Amp_11q22.1	Del_Xq21.33	0.986	1
Amp_13q22.1	Del_5q12.1	0.986	1
Amp_15q26.1	Amp_21q22.13	0.986	1
Amp_21q22.13	Del_14q32.31	0.986	1
Amp_Xq28	Del_16q23.1	0.986	1
Del_1p13.2	Del_13q12.11	0.986	1
Del_2q22.1	Del_11p15.1	0.986	1
Del_2q22.1	Del_16q23.1	0.986	1
Del_5q35.2	Del_Xq21.33	0.986	1
NFE2L2	RB1	0.987	1
PTPRC	NHS	0.987	1
TP53	NHS	0.987	1
C12orf43	1q-Amp	0.987	1
RAB35	1q-Amp	0.987	1
TCTE1	Del_5q35.2	0.987	1
USP28	17p-Del	0.987	1
5p-Amp	Amp_1q21.3	0.987	1
5p-Amp	Del_19q13.33	0.987	1
8q-Amp	Del_8p23.1	0.987	1
8q-Amp	Del_13q14.2	0.987	1
10q-Del	5q-Del	0.987	1
10q-Del	Del_13q12.11	0.987	1
11q-Del	Del_19q13.33	0.987	1
18q-Del	5q-Del	0.987	1
18q-Del	6q-Del	0.987	1
18q-Del	Del_6q26	0.987	1
5q-Del	Amp_13q22.1	0.987	1
5q-Del	Del_10q23.31	0.987	1
5q-Del	Del_13q14.2	0.987	1
6q-Del	Amp_13q22.1	0.987	1
8p-Del	Del_5q12.1	0.987	1
Xp-Del	Del_7q34	0.987	1
Amp_1p31.3	Amp_16p13.13	0.987	1
Amp_1q21.3	Del_11p15.1	0.987	1
Amp_5p15.33	Del_7q34	0.987	1
Amp_9p24.1	Amp_19q13.13	0.987	1
Amp_15q26.1	Del_4q35.2	0.987	1
Amp_16p13.13	Amp_17q25.1	0.987	1
Amp_17q25.1	Amp_19q13.13	0.987	1
Amp_17q25.1	Del_10q23.31	0.987	1
Del_3p14.2	Del_7q34	0.987	1
Del_8p23.3	Del_19q13.33	0.987	1
EP300	ZNF750	0.988	1
FBXW7	KRAS	0.988	1
FBXW7	SMAD4	0.988	1
KRAS	Amp_16p13.13	0.988	1
NFE2L2	Del_8p23.3	0.988	1
ZNF578	IDS	0.988	1
ZNF578	LIN9	0.988	1
ZNF578	SMAD4	0.988	1
ZNF578	5p-Amp	0.988	1
ZNF578	Amp_11p12	0.988	1
IDS	LIN9	0.988	1
LIN9	SMAD4	0.988	1
LIN9	3q-Amp	0.988	1
SMAD4	18q-Del	0.988	1
11q-Del	Del_17p12	0.988	1
13q-Del	Amp_11q13.3	0.988	1
18q-Del	Amp_2q33.1	0.988	1
18q-Del	Amp_11p12	0.988	1
18q-Del	Amp_11q13.3	0.988	1
4q-Del	Amp_5p15.33	0.988	1
Amp_2q33.1	Amp_8q24.21	0.988	1
Del_4q35.2	Del_13q12.11	0.988	1
ANKRD12	MUC4	0.989	1
C3orf70	CASP8	0.989	1
C3orf70	RB1	0.989	1
C3orf70	Del_19q13.33	0.989	1
CASP8	C12orf43	0.989	1
CASP8	USP28	0.989	1
HLA-A	SEMA4B	0.989	1
HLA-A	Del_1p13.2	0.989	1
MUC4	PTPRC	0.989	1
MUC4	ZNF578	0.989	1
MUC4	IDS	0.989	1
PTPRC	USP28	0.989	1
RB1	C12orf43	0.989	1
RB1	RAB35	0.989	1
RB1	USP28	0.989	1
STK11	Del_1p13.2	0.989	1
MED1	Amp_1q44	0.989	1
RAB35	Del_11p15.1	0.989	1
USP28	22q-Del	0.989	1
USP28	Del_11p15.1	0.989	1
1q-Amp	Amp_13q22.1	0.989	1
10q-Del	Del_5q35.2	0.989	1
10q-Del	Del_11q23.3	0.989	1
19p-Del	Amp_6p21.33	0.989	1
8p-Del	Del_11p15.1	0.989	1
Amp_3q28	Del_8p23.1	0.989	1
Amp_8q24.21	Amp_9p24.1	0.989	1
Amp_13q34	Del_Xp11.3	0.989	1
Amp_19q13.13	Amp_21q22.13	0.989	1
Del_1p36.23	Del_10q23.31	0.989	1
Del_1p13.2	Del_22q13.32	0.989	1
Del_4q21.3	Del_17p12	0.989	1
CASP8	HLA-B	0.99	1
HLA-B	RB1	0.99	1
HLA-B	TP53	0.99	1
HLA-B	Amp_17q25.1	0.99	1
MUC4	Del_4q22.1	0.99	1
PTPRC	FAT2	0.99	1
PTPRC	Amp_11q13.3	0.99	1
TP53	FAT2	0.99	1
TP53	Del_16q11.2	0.99	1
ZNF578	Del_17q25.3	0.99	1
FAT2	Del_3p14.2	0.99	1
1p-Amp	Amp_5p15.33	0.99	1
1p-Amp	Amp_16p13.13	0.99	1
20p-Amp	Amp_17q25.1	0.99	1
8q-Amp	Amp_11p12	0.99	1
17p-Del	Del_7q34	0.99	1
4p-Del	Del_10q23.31	0.99	1
5q-Del	Amp_11p12	0.99	1
5q-Del	Amp_11q13.3	0.99	1
6q-Del	Amp_2q33.1	0.99	1
Xp-Del	Del_18q21.2	0.99	1
Amp_1q44	Amp_21q22.13	0.99	1
Amp_2p24.3	Amp_3q28	0.99	1
Amp_2p24.3	Del_Xq21.33	0.99	1
Amp_2q33.1	Amp_9p24.1	0.99	1
Amp_3q28	Amp_15q26.1	0.99	1
Amp_5p15.33	Del_2q37.1	0.99	1
Amp_13q22.1	Del_20p12.1	0.99	1
Amp_17q25.1	Del_5q12.1	0.99	1
Amp_21q22.13	Del_5q12.1	0.99	1
Del_2q37.1	Del_4q35.2	0.99	1
Del_2q37.1	Del_13q12.11	0.99	1
Del_5q12.1	Del_17q25.3	0.99	1
Del_8p23.1	Del_18q21.2	0.99	1
Del_11q23.3	Del_18q21.2	0.99	1
Del_14q32.31	Del_16q23.1	0.99	1
C3orf70	MTOR	0.991	1
HLA-A	NHS	0.991	1
MTOR	BAP1	0.991	1
MTOR	Del_1p36.23	0.991	1
NFE2L2	TRIM9	0.991	1
NFE2L2	Amp_6p21.33	0.991	1
C12orf43	TRIM9	0.991	1
NHS	TRIM9	0.991	1
RAB35	3q-Amp	0.991	1
RAB35	11p-Del	0.991	1
TRIM9	USP28	0.991	1
USP28	11p-Del	0.991	1
1p-Amp	Amp_19q13.13	0.991	1
20p-Amp	Amp_1q44	0.991	1
8q-Amp	Del_13q12.11	0.991	1
13q-Del	Del_7q34	0.991	1
17p-Del	Del_4q35.2	0.991	1
19p-Del	Amp_15q26.1	0.991	1
19p-Del	Del_14q32.31	0.991	1
3p-Del	Del_4q21.3	0.991	1
3p-Del	Del_11q25	0.991	1
3q-Del	Amp_2q33.1	0.991	1
3q-Del	Amp_8q24.21	0.991	1
4p-Del	Del_11p15.1	0.991	1
4q-Del	Xp-Del	0.991	1
5q-Del	Del_6q26	0.991	1
5q-Del	Del_17p12	0.991	1
Xp-Del	Del_4q22.1	0.991	1
Amp_1q44	Amp_17q25.1	0.991	1
Amp_3q28	Amp_11q13.3	0.991	1
Amp_6p21.33	Del_6p24.2	0.991	1
Amp_11q13.3	Del_11q25	0.991	1
Amp_17q12	Amp_Xq28	0.991	1
Amp_19q13.13	Del_4q21.3	0.991	1
Del_2q22.1	Del_6p24.2	0.991	1
Del_2q22.1	Del_11q25	0.991	1
Del_2q37.1	Del_4q21.3	0.991	1
Del_2q37.1	Del_16q11.2	0.991	1
Del_4q35.2	Del_11q25	0.991	1
Del_5q12.1	Del_17p12	0.991	1
Del_6p24.2	Del_Xq21.33	0.991	1
Del_6q26	Del_16q11.2	0.991	1
ANKRD12	TCTE1	0.992	1
HLA-B	Del_15q21.1	0.992	1
PTPRC	Del_18q21.2	0.992	1
STK11	ZNF578	0.992	1
TP53	Amp_2p24.3	0.992	1
ZNF578	TCTE1	0.992	1
FAT2	Del_15q21.1	0.992	1
SEMA4B	11p-Del	0.992	1
SMAD4	TCTE1	0.992	1
SMAD4	Del_15q21.1	0.992	1
20q-Amp	Amp_19q13.13	0.992	1
3q-Amp	Amp_1q21.3	0.992	1
8q-Amp	Del_11q25	0.992	1
10q-Del	Del_Xq21.33	0.992	1
11p-Del	4q-Del	0.992	1
11p-Del	Del_1p13.2	0.992	1
11q-Del	Amp_3q26.31	0.992	1
18q-Del	Xp-Del	0.992	1
18q-Del	Del_8p23.3	0.992	1
8p-Del	Amp_3q26.31	0.992	1
Xp-Del	Amp_13q22.1	0.992	1
Amp_1q21.3	Amp_6p21.33	0.992	1
Amp_1q21.3	Amp_13q22.1	0.992	1
Amp_2p24.3	Amp_3q26.31	0.992	1
Amp_3q26.31	Amp_11q13.3	0.992	1
Amp_11p12	Del_20p12.1	0.992	1
Amp_16p13.13	Del_Xq21.33	0.992	1
Amp_17q25.1	Del_5q35.2	0.992	1
Amp_17q25.1	Del_11q25	0.992	1
Amp_20q11.21	Del_8p23.1	0.992	1
Amp_21q22.13	Del_5q35.2	0.992	1
Del_4q35.2	Del_10q23.31	0.992	1
Del_4q35.2	Del_17p12	0.992	1
Del_6q26	Del_17p12	0.992	1
Del_10q23.31	Del_13q12.11	0.992	1
Del_14q32.31	Del_18q21.2	0.992	1
ANKRD12	PTEN	0.993	1
ANKRD12	Del_2q22.1	0.993	1
C3orf70	Amp_19q13.13	0.993	1
ERBB2	Del_19q13.33	0.993	1
HLA-A	PIK3CA	0.993	1
HLA-B	MTOR	0.993	1
NFE2L2	8p-Del	0.993	1
NFE2L2	Del_8p23.1	0.993	1
PIK3CA	PTEN	0.993	1
PIK3CA	IDS	0.993	1
RB1	ZNF750	0.993	1
STK11	4q-Del	0.993	1
STK11	Del_17p12	0.993	1
ZNF578	Amp_13q34	0.993	1
C12orf43	Del_Xp11.3	0.993	1
IDS	3p-Del	0.993	1
IDS	Del_6q26	0.993	1
TRIM9	Amp_2q33.1	0.993	1
1p-Amp	Amp_17q25.1	0.993	1
1q-Amp	Amp_17q25.1	0.993	1
20p-Amp	Del_4q21.3	0.993	1
11q-Del	Amp_11q13.3	0.993	1
11q-Del	Del_13q14.2	0.993	1
13q-Del	Amp_6p21.33	0.993	1
13q-Del	Amp_13q34	0.993	1
13q-Del	Del_4q21.3	0.993	1
13q-Del	Del_16q23.1	0.993	1
17p-Del	5q-Del	0.993	1
17p-Del	Del_17q25.3	0.993	1
3p-Del	Amp_11p12	0.993	1
5q-Del	Del_20p12.1	0.993	1
5q-Del	Del_Xq21.33	0.993	1
Xp-Del	Del_20p12.1	0.993	1
Amp_1q21.3	Amp_5p15.33	0.993	1
Amp_5p15.33	Amp_13q22.1	0.993	1
Amp_6p21.33	Amp_13q22.1	0.993	1
Amp_11p12	Amp_13q34	0.993	1
Amp_11q13.3	Del_11q23.3	0.993	1
Amp_13q22.1	Del_2q22.1	0.993	1
Amp_17q12	Del_5q35.2	0.993	1
Amp_17q25.1	Del_Xq21.33	0.993	1
Del_2q37.1	Del_8p23.1	0.993	1
Del_4q22.1	Del_11q25	0.993	1
Del_4q22.1	Del_13q14.2	0.993	1
Del_4q35.2	Del_11p15.1	0.993	1
Del_6q26	Del_11p15.1	0.993	1
Del_15q21.1	Del_Xq21.33	0.993	1
ARID1A	IDS	0.994	1
ARID1A	Del_8p23.3	0.994	1
C3orf70	20p-Amp	0.994	1
ERBB3	HLA-A	0.994	1
ERBB3	20p-Amp	0.994	1
HLA-A	MED1	0.994	1
MTOR	MUC4	0.994	1
MUC4	FAT2	0.994	1
MUC4	TRIM9	0.994	1
TP53	20q-Amp	0.994	1
TP53	Del_4q35.2	0.994	1
ZNF578	Amp_5p15.33	0.994	1
FAT2	Del_22q13.32	0.994	1
IDS	Del_3p14.2	0.994	1
NHS	SEMA4B	0.994	1
USP28	8p-Del	0.994	1
1q-Amp	Amp_19q13.13	0.994	1
20p-Amp	Del_4q35.2	0.994	1
17p-Del	Amp_11p12	0.994	1
19p-Del	Amp_20q11.21	0.994	1
22q-Del	Del_4q35.2	0.994	1
3q-Del	Del_8p23.3	0.994	1
8p-Del	Del_2q37.1	0.994	1
8p-Del	Del_16q11.2	0.994	1
Xp-Del	Amp_13q34	0.994	1
Xp-Del	Amp_Xq28	0.994	1
Amp_2p24.3	Del_4q35.2	0.994	1
Amp_5p15.33	Del_5q35.2	0.994	1
Amp_6p21.33	Amp_19q13.13	0.994	1
Amp_9p24.1	Del_11q23.3	0.994	1
Amp_11p12	Del_3p14.2	0.994	1
Amp_11q22.1	Del_11q25	0.994	1
Amp_15q26.1	Del_8p23.3	0.994	1
Del_1p36.23	Del_7q34	0.994	1
Del_1p36.23	Del_14q32.31	0.994	1
Del_2q22.1	Del_3p14.2	0.994	1
Del_4q21.3	Del_11q25	0.994	1
Del_11p15.1	Del_17q25.3	0.994	1
Del_11q25	Del_16q11.2	0.994	1
ANKRD12	USP28	0.995	1
ARID1A	ERBB3	0.995	1
ARID1A	HLA-B	0.995	1
ARID1A	KRAS	0.995	1
ARID1A	FAT2	0.995	1
C3orf70	ZNF578	0.995	1
C3orf70	Amp_5p15.33	0.995	1
C3orf70	Amp_11p12	0.995	1
CASP8	RB1	0.995	1
CASP8	3q-Amp	0.995	1
ERBB2	PIK3CA	0.995	1
FBXW7	RB1	0.995	1
MAPK1	3q-Amp	0.995	1
MAPK1	22q-Del	0.995	1
PTPRC	18q-Del	0.995	1
ZNF578	USP28	0.995	1
BAP1	Del_3p14.2	0.995	1
C12orf43	Amp_11p12	0.995	1
IDS	USP28	0.995	1
LIN9	USP28	0.995	1
SMAD4	USP28	0.995	1
TCTE1	Del_17q25.3	0.995	1
TRIM9	ZNF750	0.995	1
USP28	Amp_5p15.33	0.995	1
20p-Amp	Amp_19q13.13	0.995	1
20q-Amp	Amp_17q12	0.995	1
5p-Amp	Amp_17q25.1	0.995	1
8q-Amp	Amp_6p21.33	0.995	1
8q-Amp	Amp_13q34	0.995	1
10q-Del	Amp_7p11.2	0.995	1
17p-Del	Del_20p12.1	0.995	1
18q-Del	Del_14q32.31	0.995	1
3q-Del	Del_8p23.1	0.995	1
4p-Del	Del_2q37.1	0.995	1
4q-Del	Del_17p12	0.995	1
6q-Del	Del_2q22.1	0.995	1
6q-Del	Del_16q11.2	0.995	1
6q-Del	Del_16q23.1	0.995	1
8p-Del	Amp_2q33.1	0.995	1
Amp_1p31.3	Amp_13q34	0.995	1
Amp_2p24.3	Amp_16p13.13	0.995	1
Amp_2p24.3	Amp_21q22.13	0.995	1
Amp_2q33.1	Amp_15q26.1	0.995	1
Amp_5p15.33	Amp_8q24.21	0.995	1
Amp_7p11.2	Amp_13q22.1	0.995	1
Amp_7p11.2	Del_Xq21.33	0.995	1
Amp_8q24.21	Del_Xp11.3	0.995	1
Amp_11q13.3	Amp_11q22.1	0.995	1
Amp_15q26.1	Amp_16p13.13	0.995	1
Amp_17q25.1	Amp_Xq28	0.995	1
Del_1p36.23	Del_4q21.3	0.995	1
Del_8p23.1	Del_17p12	0.995	1
Del_10q23.31	Del_11p15.1	0.995	1
Del_11q25	Del_17p12	0.995	1
ARID1A	Del_8p23.1	0.996	1
C3orf70	EP300	0.996	1
CASP8	TRIM9	0.996	1
EP300	Amp_1p31.3	0.996	1
EP300	Del_17q25.3	0.996	1
ERBB2	Amp_13q34	0.996	1
HLA-A	TCTE1	0.996	1
MUC4	Amp_1p31.3	0.996	1
MUC4	Del_2q37.1	0.996	1
NFE2L2	Amp_20q11.21	0.996	1
NFE2L2	Del_Xq21.33	0.996	1
PTPRC	TRIM9	0.996	1
RB1	TRIM9	0.996	1
TP53	TRIM9	0.996	1
TP53	Amp_20q11.21	0.996	1
FAT2	SEMA4B	0.996	1
SEMA4B	8p-Del	0.996	1
TRIM9	22q-Del	0.996	1
USP28	Del_16q11.2	0.996	1
1p-Amp	Amp_13q34	0.996	1
20p-Amp	Del_4q22.1	0.996	1
20q-Amp	8p-Del	0.996	1
11p-Del	5q-Del	0.996	1
11p-Del	Del_6q26	0.996	1
11p-Del	Del_17q25.3	0.996	1
13q-Del	4q-Del	0.996	1
13q-Del	Del_4q22.1	0.996	1
17p-Del	Del_5q12.1	0.996	1
17p-Del	Del_8p23.1	0.996	1
17p-Del	Del_11q23.3	0.996	1
17p-Del	Del_13q14.2	0.996	1
18q-Del	Del_8p23.1	0.996	1
19p-Del	8p-Del	0.996	1
3p-Del	4q-Del	0.996	1
3p-Del	Del_4q22.1	0.996	1
8p-Del	Del_18q21.2	0.996	1
Amp_2p24.3	Amp_17q25.1	0.996	1
Amp_2q33.1	Del_2q37.1	0.996	1
Amp_2q33.1	Del_8p23.1	0.996	1
Amp_5p15.33	Amp_17q12	0.996	1
Amp_6p21.33	Amp_11q22.1	0.996	1
Amp_9p24.1	Amp_15q26.1	0.996	1
Amp_9p24.1	Del_3p14.2	0.996	1
Amp_11q13.3	Del_13q14.2	0.996	1
Amp_13q34	Del_13q12.11	0.996	1
Del_2q37.1	Del_4q22.1	0.996	1
Del_2q37.1	Del_11q23.3	0.996	1
Del_4q22.1	Del_13q12.11	0.996	1
Del_5q35.2	Del_10q23.31	0.996	1
Del_10q23.31	Del_17p12	0.996	1
Del_11p15.1	Del_20p12.1	0.996	1
Del_17q25.3	Del_19q13.33	0.996	1
ANKRD12	NHS	0.997	1
ARID1A	PIK3CA	0.997	1
ARID1A	TCTE1	0.997	1
ARID1A	8p-Del	0.997	1
EP300	1p-Amp	0.997	1
ERBB2	SEMA4B	0.997	1
ERBB3	ZNF578	0.997	1
ERBB3	20q-Amp	0.997	1
HLA-B	ZNF578	0.997	1
HLA-B	SMAD4	0.997	1
MUC4	ZNF750	0.997	1
MUC4	11p-Del	0.997	1
TP53	Del_15q21.1	0.997	1
ZNF578	FAT2	0.997	1
BAP1	Del_6p24.2	0.997	1
C12orf43	TCTE1	0.997	1
C12orf43	4q-Del	0.997	1
C12orf43	Amp_13q22.1	0.997	1
C12orf43	Del_4q22.1	0.997	1
FAT2	SMAD4	0.997	1
SEMA4B	ZNF750	0.997	1
TRIM9	Amp_16p13.13	0.997	1
USP28	Amp_13q22.1	0.997	1
USP28	Del_6p24.2	0.997	1
1p-Amp	5p-Amp	0.997	1
1p-Amp	Amp_3q26.31	0.997	1
1p-Amp	Amp_3q28	0.997	1
20q-Amp	Amp_3q28	0.997	1
3q-Amp	Amp_1q44	0.997	1
10q-Del	Del_4q35.2	0.997	1
11p-Del	17p-Del	0.997	1
11p-Del	3q-Del	0.997	1
11p-Del	Del_4q21.3	0.997	1
11q-Del	Amp_3q28	0.997	1
13q-Del	Amp_13q22.1	0.997	1
13q-Del	Del_5q12.1	0.997	1
17p-Del	4q-Del	0.997	1
17p-Del	Del_4q22.1	0.997	1
17p-Del	Del_5q35.2	0.997	1
3p-Del	Amp_13q22.1	0.997	1
3p-Del	Del_4q35.2	0.997	1
3p-Del	Del_13q12.11	0.997	1
3q-Del	Del_1p13.2	0.997	1
3q-Del	Del_11p15.1	0.997	1
4p-Del	Del_17p12	0.997	1
8p-Del	Amp_15q26.1	0.997	1
Xp-Del	Amp_2q33.1	0.997	1
Amp_1q21.3	Amp_19q13.13	0.997	1
Amp_1q44	Amp_6p21.33	0.997	1
Amp_3q28	Del_8p23.3	0.997	1
Amp_5p15.33	Del_5q12.1	0.997	1
Amp_6p21.33	Amp_13q34	0.997	1
Amp_7p11.2	Del_3p14.2	0.997	1
Amp_17q25.1	Amp_20q11.21	0.997	1
Amp_21q22.13	Del_13q12.11	0.997	1
Del_1p36.23	Del_4q22.1	0.997	1
Del_3p14.2	Del_13q14.2	0.997	1
Del_4q21.3	Del_13q14.2	0.997	1
Del_6q26	Del_13q12.11	0.997	1
Del_7q34	Del_10q23.31	0.997	1
Del_7q34	Del_13q12.11	0.997	1
Del_8p23.1	Del_17q25.3	0.997	1
Del_10q23.31	Del_11q23.3	0.997	1
Del_10q23.31	Del_13q14.2	0.997	1
Del_11q23.3	Del_17p12	0.997	1
Del_13q14.2	Del_16q23.1	0.997	1
Del_16q23.1	Del_20p12.1	0.997	1
ARID1A	HLA-A	0.998	1
C3orf70	Amp_17q25.1	0.998	1
C3orf70	Amp_20q11.21	0.998	1
EP300	Amp_8q24.21	0.998	1
EP300	Amp_13q34	0.998	1
ERBB2	ZNF578	0.998	1
ERBB2	IDS	0.998	1
HLA-A	C12orf43	0.998	1
HLA-B	NFE2L2	0.998	1
HLA-B	PIK3CA	0.998	1
NFE2L2	MED1	0.998	1
NFE2L2	TCTE1	0.998	1
NFE2L2	ZNF750	0.998	1
ZNF578	ZNF750	0.998	1
C12orf43	Amp_13q34	0.998	1
FAT2	MED1	0.998	1
NHS	ZNF750	0.998	1
RAB35	Amp_20q11.21	0.998	1
TRIM9	Amp_9p24.1	0.998	1
USP28	Amp_8q24.21	0.998	1
USP28	Amp_13q34	0.998	1
USP28	Del_15q21.1	0.998	1
1p-Amp	Amp_21q22.13	0.998	1
1q-Amp	3q-Amp	0.998	1
1q-Amp	Amp_16p13.13	0.998	1
20q-Amp	Amp_3q26.31	0.998	1
20q-Amp	Amp_17q25.1	0.998	1
3q-Amp	Amp_5p15.33	0.998	1
3q-Amp	Del_11q25	0.998	1
5p-Amp	Amp_6p21.33	0.998	1
10q-Del	Del_11p15.1	0.998	1
11p-Del	Del_5q12.1	0.998	1
13q-Del	5q-Del	0.998	1
13q-Del	Del_3p14.2	0.998	1
17p-Del	Del_11q25	0.998	1
18q-Del	8p-Del	0.998	1
22q-Del	Del_1p13.2	0.998	1
3p-Del	Amp_7p11.2	0.998	1
3p-Del	Del_17p12	0.998	1
3q-Del	8p-Del	0.998	1
4q-Del	Del_Xp11.3	0.998	1
5q-Del	Amp_21q22.13	0.998	1
8p-Del	Amp_3q28	0.998	1
Amp_1p31.3	Amp_1q44	0.998	1
Amp_1p31.3	Amp_19q13.13	0.998	1
Amp_1p31.3	Amp_21q22.13	0.998	1
Amp_1q21.3	Amp_21q22.13	0.998	1
Amp_3q26.31	Del_11q25	0.998	1
Amp_6p21.33	Amp_15q26.1	0.998	1
Amp_8q24.21	Del_8p23.1	0.998	1
Amp_13q22.1	Del_3p14.2	0.998	1
Del_2q22.1	Del_2q37.1	0.998	1
Del_2q37.1	Del_11q25	0.998	1
Del_3p14.2	Del_5q35.2	0.998	1
Del_4q21.3	Del_13q12.11	0.998	1
Del_4q22.1	Del_Xp11.3	0.998	1
Del_6q26	Del_16q23.1	0.998	1
Del_8p23.3	Del_11p15.1	0.998	1
Del_8p23.1	Del_20p12.1	0.998	1
Del_16q23.1	Del_18q21.2	0.998	1
ANKRD12	PTPRC	0.999	1
ARID1A	MTOR	0.999	1
C3orf70	20q-Amp	0.999	1
CASP8	MUC4	0.999	1
EP300	ERBB2	0.999	1
EP300	MUC4	0.999	1
EP300	RB1	0.999	1
EP300	TP53	0.999	1
ERBB2	ERBB3	0.999	1
ERBB3	RB1	0.999	1
FBXW7	ZNF578	0.999	1
HLA-A	HLA-B	0.999	1
HLA-A	NFE2L2	0.999	1
HLA-A	FAT2	0.999	1
HLA-B	MUC4	0.999	1
HLA-B	TCTE1	0.999	1
HLA-B	ZNF750	0.999	1
MTOR	PTEN	0.999	1
MUC4	PIK3CA	0.999	1
MUC4	RB1	0.999	1
MUC4	Del_11p15.1	0.999	1
MUC4	Del_17q25.3	0.999	1
NFE2L2	C12orf43	0.999	1
PTEN	8q-Amp	0.999	1
PTEN	Del_10q23.31	0.999	1
RB1	ZNF578	0.999	1
RB1	TCTE1	0.999	1
ZNF578	SEMA4B	0.999	1
ZNF578	Amp_13q22.1	0.999	1
FAT2	TCTE1	0.999	1
FAT2	USP28	0.999	1
FAT2	Del_17q25.3	0.999	1
IDS	6q-Del	0.999	1
IDS	Del_16q11.2	0.999	1
MED1	ZNF750	0.999	1
NHS	USP28	0.999	1
SEMA4B	17p-Del	0.999	1
SEMA4B	Del_Xq21.33	0.999	1
SMAD4	TRIM9	0.999	1
TCTE1	Del_5q12.1	0.999	1
20q-Amp	3q-Amp	0.999	1
3q-Amp	Amp_1p31.3	0.999	1
3q-Amp	Amp_16p13.13	0.999	1
3q-Amp	Del_11q23.3	0.999	1
8q-Amp	Del_Xp11.3	0.999	1
10q-Del	4q-Del	0.999	1
10q-Del	Del_4q21.3	0.999	1
10q-Del	Del_4q22.1	0.999	1
10q-Del	Del_7q34	0.999	1
11p-Del	3p-Del	0.999	1
11p-Del	6q-Del	0.999	1
11p-Del	Del_5q35.2	0.999	1
17p-Del	Del_13q12.11	0.999	1
18q-Del	Del_16q23.1	0.999	1
3p-Del	4p-Del	0.999	1
3p-Del	Del_6p24.2	0.999	1
4p-Del	Amp_5p15.33	0.999	1
4p-Del	Del_3p14.2	0.999	1
4q-Del	Del_10q23.31	0.999	1
4q-Del	Del_13q12.11	0.999	1
4q-Del	Del_13q14.2	0.999	1
5q-Del	Del_7q34	0.999	1
5q-Del	Del_17q25.3	0.999	1
6q-Del	Del_11p15.1	0.999	1
Xp-Del	Amp_11p12	0.999	1
Amp_1q21.3	Amp_2p24.3	0.999	1
Amp_1q44	Amp_13q34	0.999	1
Amp_2p24.3	Amp_15q26.1	0.999	1
Amp_2q33.1	Del_8p23.3	0.999	1
Amp_3q28	Amp_20q11.21	0.999	1
Amp_5p15.33	Amp_6p21.33	0.999	1
Amp_5p15.33	Del_4q22.1	0.999	1
Amp_8q24.21	Amp_13q34	0.999	1
Amp_8q24.21	Del_2q37.1	0.999	1
Amp_11p12	Amp_13q22.1	0.999	1
Amp_11p12	Del_Xp11.3	0.999	1
Amp_11q13.3	Del_8p23.3	0.999	1
Amp_11q13.3	Del_8p23.1	0.999	1
Amp_13q22.1	Del_6p24.2	0.999	1
Amp_13q34	Amp_16p13.13	0.999	1
Amp_13q34	Del_13q14.2	0.999	1
Amp_17q25.1	Del_11q23.3	0.999	1
Amp_17q25.1	Del_17q25.3	0.999	1
Amp_Xq28	Del_Xp11.3	0.999	1
Del_2q22.1	Del_Xp11.3	0.999	1
Del_2q37.1	Del_5q35.2	0.999	1
Del_2q37.1	Del_6p24.2	0.999	1
Del_2q37.1	Del_6q26	0.999	1
Del_2q37.1	Del_20p12.1	0.999	1
Del_3p14.2	Del_4q35.2	0.999	1
Del_3p14.2	Del_6p24.2	0.999	1
Del_3p14.2	Del_17p12	0.999	1
Del_4q22.1	Del_10q23.31	0.999	1
Del_4q22.1	Del_17p12	0.999	1
Del_5q35.2	Del_17p12	0.999	1
Del_5q35.2	Del_17q25.3	0.999	1
Del_8p23.3	Del_17q25.3	0.999	1
Del_8p23.1	Del_11p15.1	0.999	1
Del_11p15.1	Del_11q23.3	0.999	1
Del_13q12.11	Del_17p12	0.999	1
Del_14q32.31	Del_16q11.2	0.999	1
ANKRD12	HLA-A	1	1
ARID1A	SMAD4	1	1
ARID1A	TRIM9	1	1
CASP8	HLA-A	1	1
EP300	Amp_21q22.13	1	1
ERBB2	RB1	1	1
ERBB2	USP28	1	1
ERBB3	TRIM9	1	1
HLA-A	MUC4	1	1
HLA-A	RB1	1	1
HLA-A	TRIM9	1	1
HLA-A	ZNF750	1	1
HLA-B	FAT2	1	1
HLA-B	MED1	1	1
HLA-B	TRIM9	1	1
HLA-B	Del_17q25.3	1	1
NFE2L2	FAT2	1	1
PIK3CA	SEMA4B	1	1
PTEN	10q-Del	1	1
STK11	SEMA4B	1	1
TP53	C12orf43	1	1
TP53	USP28	1	1
BAP1	IDS	1	1
BAP1	3p-Del	1	1
BAP1	6q-Del	1	1
BAP1	Del_6q26	1	1
C12orf43	Xp-Del	1	1
FAT2	NHS	1	1
FAT2	TRIM9	1	1
FAT2	ZNF750	1	1
FAT2	8p-Del	1	1
MED1	SMAD4	1	1
SEMA4B	USP28	1	1
SEMA4B	Del_17p12	1	1
TCTE1	TRIM9	1	1
TRIM9	Amp_15q26.1	1	1
ZNF750	Del_17q25.3	1	1
1p-Amp	1q-Amp	1	1
1p-Amp	3q-Amp	1	1
1p-Amp	Amp_1p31.3	1	1
1p-Amp	Amp_1q21.3	1	1
1p-Amp	Amp_1q44	1	1
1q-Amp	Amp_1p31.3	1	1
1q-Amp	Amp_1q21.3	1	1
1q-Amp	Amp_1q44	1	1
1q-Amp	Amp_13q34	1	1
20p-Amp	20q-Amp	1	1
20p-Amp	3q-Amp	1	1
20p-Amp	Amp_3q26.31	1	1
20p-Amp	Amp_3q28	1	1
20p-Amp	Amp_20q11.21	1	1
20q-Amp	Amp_20q11.21	1	1
3q-Amp	Amp_3q26.31	1	1
3q-Amp	Amp_3q28	1	1
3q-Amp	Amp_20q11.21	1	1
5p-Amp	Amp_5p15.33	1	1
5p-Amp	Amp_19q13.13	1	1
8q-Amp	Xp-Del	1	1
8q-Amp	Amp_8q24.21	1	1
10q-Del	Del_1p36.23	1	1
10q-Del	Del_10q23.31	1	1
10q-Del	Del_15q21.1	1	1
10q-Del	Del_19q13.33	1	1
11p-Del	11q-Del	1	1
11p-Del	Del_2q37.1	1	1
11p-Del	Del_3p14.2	1	1
11p-Del	Del_4q22.1	1	1
11p-Del	Del_11p15.1	1	1
11p-Del	Del_11q23.3	1	1
11p-Del	Del_11q25	1	1
11p-Del	Del_17p12	1	1
11q-Del	Del_11p15.1	1	1
11q-Del	Del_11q23.3	1	1
11q-Del	Del_11q25	1	1
13q-Del	Del_5q35.2	1	1
13q-Del	Del_13q12.11	1	1
13q-Del	Del_13q14.2	1	1
17p-Del	3p-Del	1	1
17p-Del	4p-Del	1	1
17p-Del	Del_3p14.2	1	1
17p-Del	Del_11p15.1	1	1
17p-Del	Del_17p12	1	1
17p-Del	Del_Xq21.33	1	1
18q-Del	Del_16q11.2	1	1
18q-Del	Del_17p12	1	1
18q-Del	Del_18q21.2	1	1
18q-Del	Del_20p12.1	1	1
19p-Del	3q-Del	1	1
22q-Del	Del_22q13.32	1	1
3p-Del	3q-Del	1	1
3p-Del	5q-Del	1	1
3p-Del	6q-Del	1	1
3p-Del	Del_3p14.2	1	1
3p-Del	Del_5q12.1	1	1
3p-Del	Del_5q35.2	1	1
3p-Del	Del_6q26	1	1
3p-Del	Del_11p15.1	1	1
3q-Del	Del_3p14.2	1	1
4p-Del	4q-Del	1	1
4p-Del	5q-Del	1	1
4p-Del	Del_4q21.3	1	1
4p-Del	Del_4q22.1	1	1
4p-Del	Del_4q35.2	1	1
4p-Del	Del_5q12.1	1	1
4p-Del	Del_5q35.2	1	1
4p-Del	Del_7q34	1	1
4q-Del	5q-Del	1	1
4q-Del	Del_3p14.2	1	1
4q-Del	Del_4q21.3	1	1
4q-Del	Del_4q22.1	1	1
4q-Del	Del_4q35.2	1	1
4q-Del	Del_5q12.1	1	1
4q-Del	Del_5q35.2	1	1
4q-Del	Del_7q34	1	1
4q-Del	Del_11p15.1	1	1
5q-Del	Del_2q37.1	1	1
5q-Del	Del_3p14.2	1	1
5q-Del	Del_4q21.3	1	1
5q-Del	Del_4q22.1	1	1
5q-Del	Del_4q35.2	1	1
5q-Del	Del_5q12.1	1	1
5q-Del	Del_5q35.2	1	1
5q-Del	Del_11p15.1	1	1
5q-Del	Del_13q12.11	1	1
6q-Del	Del_2q37.1	1	1
6q-Del	Del_3p14.2	1	1
6q-Del	Del_6p24.2	1	1
6q-Del	Del_6q26	1	1
8p-Del	Amp_11q13.3	1	1
8p-Del	Amp_20q11.21	1	1
8p-Del	Del_8p23.3	1	1
8p-Del	Del_8p23.1	1	1
Xp-Del	Amp_5p15.33	1	1
Xp-Del	Amp_8q24.21	1	1
Xp-Del	Del_Xp11.3	1	1
Amp_1p31.3	Amp_1q21.3	1	1
Amp_1q21.3	Amp_1q44	1	1
Amp_1q21.3	Amp_13q34	1	1
Amp_1q21.3	Amp_16p13.13	1	1
Amp_1q44	Amp_16p13.13	1	1
Amp_3q26.31	Amp_3q28	1	1
Amp_3q26.31	Amp_20q11.21	1	1
Amp_3q26.31	Del_11q23.3	1	1
Amp_3q28	Del_11q23.3	1	1
Amp_3q28	Del_11q25	1	1
Amp_5p15.33	Amp_19q13.13	1	1
Amp_7p11.2	Amp_11q13.3	1	1
Amp_7p11.2	Amp_11q22.1	1	1
Amp_11p12	Del_11p15.1	1	1
Amp_13q22.1	Amp_13q34	1	1
Amp_13q22.1	Del_2q37.1	1	1
Amp_13q22.1	Del_13q12.11	1	1
Amp_17q12	Amp_17q25.1	1	1
Amp_Xq28	Del_2q22.1	1	1
Del_1p36.23	Del_19q13.33	1	1
Del_2q37.1	Del_3p14.2	1	1
Del_2q37.1	Del_5q12.1	1	1
Del_2q37.1	Del_7q34	1	1
Del_2q37.1	Del_11p15.1	1	1
Del_3p14.2	Del_4q21.3	1	1
Del_3p14.2	Del_4q22.1	1	1
Del_3p14.2	Del_5q12.1	1	1
Del_3p14.2	Del_6q26	1	1
Del_3p14.2	Del_11p15.1	1	1
Del_3p14.2	Del_13q12.11	1	1
Del_4q21.3	Del_4q22.1	1	1
Del_4q21.3	Del_4q35.2	1	1
Del_4q21.3	Del_5q12.1	1	1
Del_4q21.3	Del_5q35.2	1	1
Del_4q21.3	Del_7q34	1	1
Del_4q21.3	Del_10q23.31	1	1
Del_4q21.3	Del_11p15.1	1	1
Del_4q22.1	Del_4q35.2	1	1
Del_4q22.1	Del_5q12.1	1	1
Del_4q22.1	Del_5q35.2	1	1
Del_4q22.1	Del_7q34	1	1
Del_4q22.1	Del_11p15.1	1	1
Del_4q35.2	Del_5q12.1	1	1
Del_4q35.2	Del_5q35.2	1	1
Del_4q35.2	Del_7q34	1	1
Del_5q12.1	Del_5q35.2	1	1
Del_5q12.1	Del_7q34	1	1
Del_5q12.1	Del_11p15.1	1	1
Del_5q12.1	Del_13q12.11	1	1
Del_5q35.2	Del_7q34	1	1
Del_5q35.2	Del_11p15.1	1	1
Del_5q35.2	Del_13q12.11	1	1
Del_6p24.2	Del_6q26	1	1
Del_8p23.3	Del_8p23.1	1	1
Del_10q23.31	Del_15q21.1	1	1
Del_11p15.1	Del_11q25	1	1
Del_11p15.1	Del_13q12.11	1	1
Del_11p15.1	Del_17p12	1	1
Del_11q23.3	Del_11q25	1	1
Del_11q23.3	Del_Xq21.33	1	1
Del_11q25	Del_Xq21.33	1	1
Del_13q12.11	Del_13q14.2	1	1
Del_16q11.2	Del_16q23.1	1	1
Del_16q11.2	Del_18q21.2	1	1
Del_16q11.2	Del_20p12.1	1	1
Del_17p12	Del_18q21.2	1	1
Del_17p12	Del_20p12.1	1	1
Del_17q25.3	Del_Xq21.33	1	1
Del_18q21.2	Del_20p12.1	1	1
