Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-3X-AAV9-01A-72D-A416-01	TCGA-3X-AAVA-01A-11D-A416-01	TCGA-3X-AAVB-01A-31D-A416-01	TCGA-3X-AAVC-01A-21D-A416-01	TCGA-3X-AAVE-01A-11D-A416-01	TCGA-4G-AAZO-01A-12D-A416-01	TCGA-4G-AAZT-01A-11D-A416-01	TCGA-W5-AA2G-01A-11D-A416-01	TCGA-W5-AA2H-01A-31D-A416-01	TCGA-W5-AA2I-01A-32D-A416-01	TCGA-W5-AA2O-01A-11D-A416-01	TCGA-W5-AA2Q-01A-11D-A416-01	TCGA-W5-AA2R-01A-11D-A416-01	TCGA-W5-AA2T-01A-12D-A416-01	TCGA-W5-AA2U-01A-11D-A416-01	TCGA-W5-AA2W-01A-11D-A416-01	TCGA-W5-AA2X-01A-11D-A416-01	TCGA-W5-AA2Z-01A-11D-A416-01	TCGA-W5-AA30-01A-31D-A416-01	TCGA-W5-AA31-01A-11D-A416-01	TCGA-W5-AA33-01A-11D-A416-01	TCGA-W5-AA34-01A-11D-A416-01	TCGA-W5-AA36-01A-11D-A416-01	TCGA-W5-AA38-01A-11D-A416-01	TCGA-W5-AA39-01A-11D-A416-01	TCGA-W6-AA0S-01A-11D-A416-01	TCGA-WD-A7RX-01A-12D-A416-01	TCGA-YR-A95A-01A-12D-A416-01	TCGA-ZD-A8I3-01A-11D-A416-01	TCGA-ZH-A8Y1-01A-11D-A416-01	TCGA-ZH-A8Y2-01A-11D-A416-01	TCGA-ZH-A8Y4-01A-11D-A416-01	TCGA-ZH-A8Y5-01A-11D-A416-01	TCGA-ZH-A8Y6-01A-11D-A416-01	TCGA-ZH-A8Y8-01A-51D-A416-01	TCGA-ZU-A8S4-01A-11D-A416-01	
Amplification Peak 1	1p22.3 	chr1:85974031-86006008(probes 47288:47299)      	chr1:85979933-86003165(probes 47289:47298)      	chr1:85979933-86008397(probes 47289:47302)      	0.076904	 0.076904		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	1	2	1	0	0	0	0	2	0	0	0	1	1	1	1	1	0	1	0	0	2	0	0	0	0	2	2	0	2	0	1	0	
Amplification Peak 2	1q22   	chr1:120527362-158514225(probes 67831:72174)  	chr1:155140649-155260880(probes 70312:70355)  	chr1:149879546-158514528(probes 67832:72176)  	0.013374	 0.013374		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	1	2	1	0	0	0	0	2	1	1	0	2	1	1	2	1	1	1	1	0	2	0	1	1	1	2	2	1	2	0	1	0	
Amplification Peak 3	11q13.3	chr11:68720012-69603036(probes 1014821:1015332)	chr11:68897526-69602645(probes 1014918:1015331)	chr11:68257387-69699301(probes 1014591:1015391)	0.001436	 0.001436		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	
Amplification Peak 4	12q13.2	chr12:54953957-54972298(probes 1084054:1084062)	chr12:54958688-54971346(probes 1084055:1084061)	chr12:54958688-54972842(probes 1084055:1084064)	0.22872	  0.22872		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	1	0	1	0	1	0	0	0	0	0	0	1	0	2	1	0	0	0	0	
Deletion Peak  1	1p36.21 	chr1:7829287-29140747(probes 2871:13491)           	chr1:13733413-14030712(probes 5331:5497)            	chr1:1-41800197(probes 1:20220)                      	4.7888e-22	 4.7888e-22		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	
Deletion Peak  2	3p25.3  	chr3:1-50126729(probes 260560:288297)              	chr3:11309359-11763000(probes 265877:266140)        	chr3:11439864-11442987(probes 265949:265950)        	0.021694	   0.045413		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	0	0	1	0	
Deletion Peak  3	3p13    	chr3:44449563-78650559(probes 285669:305719)      	chr3:70999879-71635142(probes 301232:301618)        	chr3:66990842-77740314(probes 298473:305246)        	0.016158	   0.033075		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	0	0	1	0	
Deletion Peak  4	4q34.3  	chr4:178100730-182757119(probes 464711:467118)  	chr4:178748245-178755961(probes 465138:465139)    	chr4:176473749-191154276(probes 463754:469780)    	5.9932e-06	 5.9932e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	1	0	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	0	1	1	0	0	1	1	
Deletion Peak  5	5q13.3  	chr5:44817857-94730339(probes 495526:520234)      	chr5:73920940-74075428(probes 509056:509132)        	chr5:73909522-74037385(probes 509053:509117)        	0.16937	    0.17683		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	
Deletion Peak  6	6q13    	chr6:57084910-87648565(probes 604193:618161)      	chr6:72593884-73117362(probes 609827:610149)        	chr6:72237166-73391165(probes 609573:610303)        	0.021943	   0.075759		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	1	0	0	1	1	0	0	1	1	0	0	1	1	1	1	1	0	1	0	1	1	1	1	0	1	1	1	0	1	0	
Deletion Peak  7	6q25.3  	chr6:1-171115067(probes 570333:666870)            	chr6:157775888-158099316(probes 659933:660035)    	chr6:158024602-158041282(probes 659985:659986)    	0.039656	    0.26142		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	0	1	1	1	0	1	1	0	0	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	0	
Deletion Peak  8	8p23.1  	chr8:10891960-11105303(probes 752821:752975)      	chr8:10745991-11063002(probes 752725:752929)        	chr8:10896698-10900620(probes 752828:752829)        	0.23608	    0.22894		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	1	0	1	1	1	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	
Deletion Peak  9	9p21.3  	chr9:21626574-22448737(probes 843140:843618)      	chr9:21959052-21997722(probes 843305:843318)        	chr9:21727209-22133715(probes 843152:843435)        	2.1537e-05	 4.7036e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	0	1	0	1	0	0	0	1	1	1	0	0	1	0	1	1	1	1	0	1	1	0	1	0	1	1	0	0	1	1	
Deletion Peak 10	9q21.11 	chr9:38614979-131009466(probes 853009:893095)    	chr9:38747065-71039939(probes 853161:853162)        	chr9:38747689-71041877(probes 853162:853163)        	0.06273	    0.14944		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	1	1	0	1	0	1	0	0	0	1	1	0	0	0	1	0	1	1	0	1	0	0	1	0	1	1	1	1	1	0	1	0	
Deletion Peak 11	10q26.12	chr10:97318150-135534747(probes 954749:978775)  	chr10:122214604-122349995(probes 970584:970704)  	chr10:112057408-123242962(probes 963563:971548)  	0.04873	   0.048612		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	1	0	0	0	0	1	0	0	1	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	
Deletion Peak 12	11q25   	chr11:90288262-135006516(probes 1027242:1056064)	chr11:133303820-135006516(probes 1055632:1056064)	chr11:132819664-135006516(probes 1055592:1056064)	0.13909	    0.13909		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	0	0	0	0	1	0	0	1	1	0	1	0	1	1	0	1	0	0	0	0	1	1	0	0	1	1	0	0	0	0	
Deletion Peak 13	12q24.13	chr12:83527712-133851895(probes 1101417:1130043)	chr12:112836029-112951292(probes 1119109:1119275)	chr12:99775538-119761253(probes 1111453:1123822)  	0.067933	   0.064106		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	
Deletion Peak 14	13q21.32	chr13:63305697-78275817(probes 1155537:1163883)  	chr13:67943174-67954858(probes 1157478:1157484)    	chr13:66944586-68670303(probes 1157103:1157758)    	0.08229	   0.081712		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	1	1	0	1	1	1	0	0	1	1	0	1	1	0	1	0	0	1	0	0	1	0	0	0	0	1	1	
Deletion Peak 15	14q22.1 	chr14:50993752-51312472(probes 1202276:1202441)  	chr14:50995556-51157441(probes 1202277:1202342)    	chr14:51041871-51106122(probes 1202296:1202327)    	0.032552	   0.032552		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	1	1	0	0	1	1	
Deletion Peak 16	14q32.12	chr14:1-107349540(probes 1186721:1236190)       	chr14:90177517-95943547(probes 1226762:1230511)    	chr14:60805725-107349540(probes 1208763:1236190)  	2.1537e-05	    0.29584		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	1	0	1	1	0	1	1	1	0	0	0	1	0	0	1	1	1	0	1	1	0	0	0	1	1	1	0	1	0	
Deletion Peak 17	14q32.11	chr14:60106279-107349540(probes 1208395:1236190)	chr14:90177517-90748886(probes 1226762:1227121)    	chr14:60805725-107349540(probes 1208763:1236190)  	2.1537e-05	   0.033075		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	1	0	1	1	0	1	1	1	0	0	0	1	0	0	1	1	1	0	1	1	0	0	0	1	1	1	0	1	0	
Deletion Peak 18	14q32.33	chr14:52289590-107349540(probes 1203191:1236190)	chr14:105139895-105204232(probes 1235944:1235952)	chr14:60805725-107349540(probes 1208763:1236190)  	1.2155e-05	    0.21614		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	1	0	1	1	0	1	1	1	0	0	0	1	0	0	1	1	1	0	1	1	0	0	0	1	1	1	0	1	0	
Deletion Peak 19	16q23.1 	chr16:78098006-79299841(probes 1313938:1315011)  	chr16:78129058-79247026(probes 1313969:1314982)    	chr16:78583258-78586506(probes 1314476:1314477)    	0.23608	    0.22894		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	
Amplification Peak 1 - CN values	1p22.3 	chr1:85974031-86006008(probes 47288:47299)      	chr1:85979933-86003165(probes 47289:47298)      	chr1:85979933-86008397(probes 47289:47302)      	0.076904	 0.076904		Actual Copy Change Given	-0.023505	-0.028218	0	0.081842	0.14682	1.5883	0.51682	0	-0.00055444	0.069669	0.026514	2.1965	-0.0050003	0.052241	0.0063871	0.37693	0.29755	0.6033	0.36051	0.32795	-0.039258	0.79162	0.018243	0.028481	1.0629	-0.76424	0.034677	0.0029143	-0.52649	1.1571	0.97802	0.081466	1.6183	-0.00027724	0.45224	-0.0011024	
Amplification Peak 2 - CN values	1q22   	chr1:120527362-158514225(probes 67831:72174)  	chr1:155140649-155260880(probes 70312:70355)  	chr1:149879546-158514528(probes 67832:72176)  	0.013374	 0.013374		Actual Copy Change Given	-0.023505	1.3893	0.0025868	0.081842	0.14682	1.1586	0.51333	0	-0.00055444	0.069669	0.026514	3.6569	0.68291	0.71735	0.0063871	1.301	0.82447	0.6033	1.9299	0.37528	0.36756	0.79162	0.72263	0.028481	1.5184	0.024408	0.42797	0.67604	0.33004	1.4759	0.9552	0.80111	3.2083	-0.00027724	0.45224	-0.0011024	
Amplification Peak 3 - CN values	11q13.3	chr11:68720012-69603036(probes 1014821:1015332)	chr11:68897526-69602645(probes 1014918:1015331)	chr11:68257387-69699301(probes 1014591:1015391)	0.001436	 0.001436		Actual Copy Change Given	0.10285	-0.014228	0.27973	-0.30721	-0.10697	0.018103	-0.036054	-0.0067813	-0.0031859	-0.062495	-0.072675	-0.0094046	-0.0091286	3.6569	-0.005261	-0.0079268	2.6787	-0.04211	0.97275	-0.37268	-0.00041585	-0.11924	-0.0038779	0.0069435	-0.010922	0.0011093	2.6522	-0.081605	3.6569	0.008892	0.37431	-0.3246	-0.015003	-0.0012473	-0.0014722	-0.037348	
Amplification Peak 4 - CN values	12q13.2	chr12:54953957-54972298(probes 1084054:1084062)	chr12:54958688-54971346(probes 1084055:1084061)	chr12:54958688-54972842(probes 1084055:1084064)	0.22872	  0.22872		Actual Copy Change Given	0.11374	-0.0053992	-0.29808	-0.013815	0.1437	0.034908	0.31851	-0.25624	0.0011093	0.037359	0.032845	-0.010094	-0.0091286	0.039902	0.011818	0.0028614	3.4862	0.59818	0	0.3692	0.00069327	0.32447	-0.01037	0.021183	-0.0089906	0.027919	0.091175	0.014749	0.32198	0	2.4523	0.39928	-0.0081624	0.00083195	0.016425	0.012941	
Deletion Peak  1 - CN values	1p36.21 	chr1:7829287-29140747(probes 2871:13491)           	chr1:13733413-14030712(probes 5331:5497)            	chr1:1-41800197(probes 1:20220)                      	4.7888e-22	 4.7888e-22		Actual Copy Change Given	-0.023505	-0.79661	0	0.081842	-0.48418	-0.84195	-0.58104	-0.52604	-0.00055444	-0.79444	-0.79895	-0.96193	-0.5717	-0.86515	-0.79886	-0.87799	-0.76289	-0.67339	-0.52287	-0.43061	-0.42042	-0.90609	-0.84171	-0.69929	-0.88588	-0.76424	-0.54472	-0.73679	-0.53027	-0.75819	-0.68245	-0.78142	-0.88008	0.0016642	-0.51099	-0.0020721	
Deletion Peak  2 - CN values	3p25.3  	chr3:1-50126729(probes 260560:288297)              	chr3:11309359-11763000(probes 265877:266140)        	chr3:11439864-11442987(probes 265949:265950)        	0.021694	   0.045413		Actual Copy Change Given	-0.14	-0.78235	0.12159	-0.46717	-0.31669	-0.8229	-0.56843	0.0020805	-5.1813e-05	-0.75892	-0.72815	-0.0034627	-0.60022	-0.83543	-0.78446	-0.87328	-0.52778	-0.67095	-0.49016	-0.36567	-0.39241	-0.89051	-0.814	-0.6397	-0.90813	-0.76312	-0.50266	-0.7395	-1.2929	0.022725	-0.56151	-0.74089	0.015447	-0.00079284	-0.45018	0.002642	
Deletion Peak  3 - CN values	3p13    	chr3:44449563-78650559(probes 285669:305719)      	chr3:70999879-71635142(probes 301232:301618)        	chr3:66990842-77740314(probes 298473:305246)        	0.016158	   0.033075		Actual Copy Change Given	-0.13858	-0.78235	0.12159	-0.46717	-0.32007	-0.8229	-1.2929	-0.52685	-5.1813e-05	-0.76101	-0.72509	-0.0034627	-0.60785	-0.83041	-0.78446	-0.82236	-0.52778	-0.67095	-0.48722	-0.36147	0.027778	-0.89051	-0.814	-0.6397	-0.86507	-0.76312	-0.51988	0.012934	-0.45721	-0.77719	-0.56151	-0.72341	0.015447	-0.00079284	-0.45018	0.002642	
Deletion Peak  4 - CN values	4q34.3  	chr4:178100730-182757119(probes 464711:467118)  	chr4:178748245-178755961(probes 465138:465139)    	chr4:176473749-191154276(probes 463754:469780)    	5.9932e-06	 5.9932e-06		Actual Copy Change Given	-0.0088459	0.011958	0.22386	-0.038863	-0.26167	-0.35692	-0.021274	-0.52747	0.0044411	-0.74185	-0.65882	-0.947	-0.60284	-1.2929	0.019643	-0.80003	-0.51713	-0.66031	-0.52256	-0.78656	0.010842	0.028763	-0.82505	-0.60332	-0.87393	-0.75242	-0.47543	-0.75034	0.3357	-0.0092666	-0.55341	-0.71462	-0.0092666	0	-0.43018	-0.28488	
Deletion Peak  5 - CN values	5q13.3  	chr5:44817857-94730339(probes 495526:520234)      	chr5:73920940-74075428(probes 509056:509132)        	chr5:73909522-74037385(probes 509053:509117)        	0.16937	    0.17683		Actual Copy Change Given	-0.04211	0.076135	-0.31022	-0.47369	-0.27619	0.045282	0.30521	0.23643	-0.0052088	0.004719	0.053521	-0.0056757	0.00019675	0.050392	-0.014228	0.037782	-0.53685	0.61208	-0.8026	0.41622	0.0090318	0.0034687	0.0080567	0.034536	0.77753	0.023987	0.054376	-0.74542	0.31892	-0.0040437	-0.58012	0.16911	-0.013815	-0.00010982	0.026373	-0.27822	
Deletion Peak  6 - CN values	6q13    	chr6:57084910-87648565(probes 604193:618161)      	chr6:72593884-73117362(probes 609827:610149)        	chr6:72237166-73391165(probes 609573:610303)        	0.021943	   0.075759		Actual Copy Change Given	-0.071472	-0.78387	-0.31171	-0.0008316	0	0.060651	-0.58402	0.0035139	0.00097064	-0.74595	-0.69477	0.010285	0.0065262	-0.83478	-0.78975	0.015308	0.38121	-0.67343	-0.49715	-0.36635	-0.38772	-0.75504	0.025952	-0.61201	0.79316	-0.76029	-0.49934	-0.75694	-0.52404	-0.0067813	-0.55188	-0.73792	-0.91047	0.00013863	-0.43018	0.056662	
Deletion Peak  7 - CN values	6q25.3  	chr6:1-171115067(probes 570333:666870)            	chr6:157775888-158099316(probes 659933:660035)    	chr6:158024602-158041282(probes 659985:659986)    	0.039656	    0.26142		Actual Copy Change Given	-0.071472	-0.8017	-0.31171	-0.0008316	-0.012851	-0.81548	-0.58274	-0.53378	0.00097064	-0.7636	-0.71076	-0.018964	0.0065262	-0.83761	-0.78975	-0.81778	0.38633	-0.68677	-0.4986	-0.38313	-0.39486	-0.52951	-0.8103	-0.63036	0.79316	-0.76029	-0.49613	-0.74957	-0.532	-0.013953	-0.57075	-0.73792	-0.9195	-0.0053891	-0.46408	0.056662	
Deletion Peak  8 - CN values	8p23.1  	chr8:10891960-11105303(probes 752821:752975)      	chr8:10745991-11063002(probes 752725:752929)        	chr8:10896698-10900620(probes 752828:752829)        	0.23608	    0.22894		Actual Copy Change Given	-0.1431	0.0081959	-0.001019	-0.9254	0.21668	0.027638	0.31145	-0.53032	0.003191	-0.14849	-0.75917	0.029184	0.022164	0.053237	0.0013868	0.0092371	-0.53541	0.64103	-0.37876	-0.39141	-0.39185	-0.0091286	-0.010922	-0.30745	-0.013264	0.0022193	-0.48355	0.00458	-0.013763	0.016146	-0.61109	0.077142	-0.030404	0.003191	-0.47088	0.01019	
Deletion Peak  9 - CN values	9p21.3  	chr9:21626574-22448737(probes 843140:843618)      	chr9:21959052-21997722(probes 843305:843318)        	chr9:21727209-22133715(probes 843152:843435)        	2.1537e-05	 4.7036e-05		Actual Copy Change Given	-0.39464	-0.36034	-0.87356	-0.45576	-0.14888	-0.38336	0.011958	-0.52	-0.0015243	-0.75538	0.0029133	0.071822	-0.0015669	-0.83962	-0.78505	-0.82122	-0.049838	-0.005261	-0.49809	0	-0.37448	-0.54844	-1.2929	-0.6434	-0.00069303	-0.7489	-0.50616	-0.0012473	-0.53647	0.13001	-1.2929	-0.73888	-0.022058	0.00020508	-0.47459	-0.50162	
Deletion Peak 10 - CN values	9q21.11 	chr9:38614979-131009466(probes 853009:893095)    	chr9:38747065-71039939(probes 853161:853162)        	chr9:38747689-71041877(probes 853162:853163)        	0.06273	    0.14944		Actual Copy Change Given	-0.12823	-0.025072	-0.018929	-0.45576	-0.14888	-0.81843	0.011958	-0.52	-0.0015243	-0.75538	0.0029133	0.071822	0.00597	-0.84982	-0.78505	-0.017254	-0.049838	-0.005261	-0.49809	0	-0.39597	-0.87346	-0.0059522	-0.6434	-0.00069303	0.0022807	-0.50616	-0.0012473	-0.53647	-0.76683	-0.60104	-0.73888	-0.89174	0.00020508	-0.47459	-0.043731	
Deletion Peak 11 - CN values	10q26.12	chr10:97318150-135534747(probes 954749:978775)  	chr10:122214604-122349995(probes 970584:970704)  	chr10:112057408-123242962(probes 963563:971548)  	0.04873	   0.048612		Actual Copy Change Given	0.12638	-0.17028	-0.30831	0.036794	-0.37223	-0.028901	-0.026304	0.0020805	-0.0012473	-0.7063	0.35283	-0.028765	-0.59857	0.031295	0.010006	-0.84355	0.051237	-0.68205	-0.49267	-0.39029	0.0034687	0.0083351	0.016845	0.046133	-0.0049844	-0.00027724	0.0015405	0	-0.013467	-0.78437	0	-0.31657	-0.05442	-0.0081658	0.0076392	-0.29543	
Deletion Peak 12 - CN values	11q25   	chr11:90288262-135006516(probes 1027242:1056064)	chr11:133303820-135006516(probes 1055632:1056064)	chr11:132819664-135006516(probes 1055592:1056064)	0.13909	    0.13909		Actual Copy Change Given	0.10716	-0.022195	0.28733	-0.48796	-0.10697	0.0095883	-0.03054	-0.0067813	-0.0031859	-0.062495	-0.7442	-0.0097731	-0.0091286	-0.86342	-0.7972	-0.00069303	-0.53989	-0.04211	-0.49705	-0.37268	-0.00041585	-0.48102	-0.0038779	0.0069435	-0.010922	0.0011093	-0.49757	-0.74334	0.024341	0.008892	-0.62821	-0.79586	-0.0076101	-0.0088935	-0.0014722	0.0072281	
Deletion Peak 13 - CN values	12q24.13	chr12:83527712-133851895(probes 1101417:1130043)	chr12:112836029-112951292(probes 1119109:1119275)	chr12:99775538-119761253(probes 1111453:1123822)  	0.067933	   0.064106		Actual Copy Change Given	0.11374	-0.0053992	-0.29808	-0.024075	0.14429	-0.82342	0.31851	-0.25624	0.0011093	0.037359	-0.01971	-0.010094	-0.0091286	0.039902	-0.79001	0.0028614	-0.44394	0.59818	0	0.3692	0.00069327	0.32447	-0.01037	0.006109	-0.0089906	-0.76518	-0.44149	0	0.32198	0	-0.086446	0.39928	-0.89297	0.0079175	0.016425	0	
Deletion Peak 14 - CN values	13q21.32	chr13:63305697-78275817(probes 1155537:1163883)  	chr13:67943174-67954858(probes 1157478:1157484)    	chr13:66944586-68670303(probes 1157103:1157758)    	0.08229	   0.081712		Actual Copy Change Given	-0.0037395	0.00073226	0.26646	0.39081	-0.22562	0.042874	-0.033405	-0.78967	0	-0.74603	-0.66504	-0.0040162	-0.60061	-1.2889	-0.78125	0.053806	0.4285	-0.66726	-0.4935	0.013911	-0.38381	-0.88023	0.011121	-0.62875	0.0051359	0.0034413	-0.48595	-0.0064567	-0.014293	-0.327	-0.03551	-0.085722	-0.016841	0.00083195	-0.4174	-0.12338	
Deletion Peak 15 - CN values	14q22.1 	chr14:50993752-51312472(probes 1202276:1202441)  	chr14:50995556-51157441(probes 1202277:1202342)    	chr14:51041871-51106122(probes 1202296:1202327)    	0.032552	   0.032552		Actual Copy Change Given	0.083776	-1.2929	0.26446	-0.0022168	-0.80019	-0.38022	-0.57881	0.0062481	0	0	0.03214	-0.005261	-0.0023044	-0.81868	-0.78773	0	-0.022751	-0.068663	-0.49673	-0.012938	-0.00069303	0.0097276	-1.2929	-0.30968	0.0044411	0.0084743	-0.11155	-0.0041546	-0.0099505	-0.0015243	-0.56559	-0.73099	0.79646	-0.00041585	-0.45276	-0.28548	
Deletion Peak 16 - CN values	14q32.12	chr14:1-107349540(probes 1186721:1236190)       	chr14:90177517-95943547(probes 1226762:1230511)    	chr14:60805725-107349540(probes 1208763:1236190)  	2.1537e-05	    0.29584		Actual Copy Change Given	0.09072	-0.79411	0.26446	-0.0022168	-0.36045	-0.38022	-0.57881	-0.52614	0	-0.80741	-0.75305	-0.005261	-0.59731	-0.83843	-0.79293	0	-0.022751	-0.068663	-0.49673	-0.012938	-0.00069303	-0.89458	-0.83236	-0.30968	0.0044411	-0.77814	-0.65314	0.034959	-0.01209	-0.0015243	-0.59144	-0.77787	-0.90137	-0.00041585	-0.45276	0.00069958	
Deletion Peak 17 - CN values	14q32.11	chr14:60106279-107349540(probes 1208395:1236190)	chr14:90177517-90748886(probes 1226762:1227121)    	chr14:60805725-107349540(probes 1208763:1236190)  	2.1537e-05	   0.033075		Actual Copy Change Given	0.09072	-0.79411	0.26446	-0.0022168	-0.36045	-0.38022	-0.57881	-0.52614	0	-0.80741	-0.75305	-0.005261	-0.59731	-0.83843	-0.79293	0	-0.022751	-0.068663	-0.49673	-0.012938	-0.00069303	-0.89089	-0.83236	-0.30968	0.0044411	-0.77814	-0.65314	0.034959	-0.01209	-0.0015243	-0.59144	-1.21	-0.90137	-0.00041585	-0.45276	0.00069958	
Deletion Peak 18 - CN values	14q32.33	chr14:52289590-107349540(probes 1203191:1236190)	chr14:105139895-105204232(probes 1235944:1235952)	chr14:60805725-107349540(probes 1208763:1236190)  	1.2155e-05	    0.21614		Actual Copy Change Given	0.09072	-0.79411	0.26446	-0.0022168	-0.36045	-0.38022	-0.57881	-0.52614	0	-0.80741	-0.75305	-0.005261	-0.59731	-0.83843	-0.80236	0	-0.022751	-0.096734	-0.49673	-0.012938	-0.00069303	-0.89458	-0.83236	-0.30968	0.0044411	-0.77814	-0.65314	-0.0045695	-0.01209	-0.0015243	-1.2929	-0.77787	-0.8758	-0.00041585	-0.51924	0.00069958	
Deletion Peak 19 - CN values	16q23.1 	chr16:78098006-79299841(probes 1313938:1315011)  	chr16:78129058-79247026(probes 1313969:1314982)    	chr16:78583258-78586506(probes 1314476:1314477)    	0.23608	    0.22894		Actual Copy Change Given	0.075991	-0.049695	0.23545	0.8048	-0.15349	0.0093098	0.30521	0.247	-0.0059522	0.012795	-0.021572	-0.024661	0.027216	0.040609	0.0037465	-0.040616	-0.026175	-0.67315	-0.22244	-0.015604	-0.0083005	-0.88935	-0.010508	-0.29603	0.010424	0.68924	0.015308	0.0063871	0.30998	-0.75253	0.053172	-0.39085	0.016565	0.0030522	-0.022332	0.0034751	
