Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	A	T	G	C	Cg	cG	tCw	wGa	tCa	tGa	tCt	aGa	tC	Ga	tCh	dGa	cC	Gg	wrC	Gyw	Cc	gG	wA	Tw	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	"CONTEXT(+/-20)"	a_counts	t_counts	g_counts	c_counts	cg_counts	tcw_counts	wga_counts	tca_counts	tga_counts	tct_counts	aga_counts	tc_counts	ga_counts	tch_counts	dga_counts	cc_counts	gg_counts	wrc_counts	gyw_counts	cc_counts	gg_counts	wa_counts	tw_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
MAN1C1	57134	hgsc.bcm.edu	37	chr1	26079974	26079974	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctttgatcccctcctttacaGgtgttccgaataaaggccat	9	13	7	12	1	0	1	0	1	0	0	3	2	3	1	5	2	1	1	5	2	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MAN1C1,NS,carcinoma,0,1	MAN1C1	NM_020379	exon5	c.835-1G>T	.	TTTACAGGTGTTC	.	47	2	39	1	.	0	T	26079974	G	T	26079974	5	4	1	1	0	0	0	0	0	0	1	0	9263	1014	35	3	852	3	MAN1C1	1	26079974	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		26079974	223170647	1	1											
ADC	113451	hgsc.bcm.edu	37	chr1	33583665	33583665	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctgtgggcatgggttcccccTtttgggggacccaggcctgc	3	10	15	13	0	0	0	0	0	0	0	1	1	1	1	4	5	1	2	4	5	0	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_052998	exon11	c.T1192C	p.F398L	TCCCCCTTTTGGG	.	96	4	46	0	.	.	C	33583665	T	C	33583665	3	2	1	1	0	0	0	0	1	0	0	0	286	1609	56	4	1222	4	ADC	1	33583665	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	7503691	33583665	215666956	2	2											
PCSK9	255738	hgsc.bcm.edu	37	chr1	55505552	55505552	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggtcctggtggccgctgccActgctgctgctgctgctgct	1	11	14	15	2	0	0	0	0	0	0	1	0	1	0	3	3	7	7	3	3	0	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,7	.	NM_174936	exon1	c.A42G	p.P14P	GCTGCCACTGCTG	.	69	3	63	0	.	76	G	55505552	A	G	55505552	2	3	1	1	0	0	0	0	0	0	0	1	11653	146	6	4		4	PCSK9	1	55505552	Silent	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	21921887	55505552	193745069	3	3											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	63018485	63018485	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gattgctattactaaggcttCgagaacgatttaaattaagg	14	13	9	5	2	0	1	0	0	0	1	1	4	0	1	0	2	3	2	0	2	7	8	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001271999	exon22	c.G2684A	p.R895Q	AGGCTTCGAGAAC	.	83	10	70	0	.	.	T	63018485	C	T	63018485	3	4	1	1	0	0	0	0	1	0	0	0	4719	884	31	1	3757	1	DOCK7	1	63018485	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	7512933	63018485	186232136	4	4											
IL12RB2	3595	hgsc.bcm.edu	37	chr1	67787288	67787288	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctgtatcttattgcagatgCgtgcaagagaggcgatgtga	10	12	13	6	2	2	3	0	1	2	2	2	5	2	3	0	1	3	3	0	1	3	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	IL12RB2,NS,carcinoma,0,1	IL12RB2	NM_001559	exon3	c.C80T	p.A27V	CAGATGCGTGCAA	.	57	3	43	0	.	0	T	67787288	C	T	67787288	3	4	1	1	0	0	0	0	1	0	0	0	7671	768	27	1	86	1	IL12RB2	1	67787288	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	4768803	67787288	181463333	5	5											
CLCA2	9635	hgsc.bcm.edu	37	chr1	86913194	86913194	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taagacttgttttacagcctGggcactggacttacaccctg	9	12	9	11	0	0	1	0	0	0	1	0	2	0	2	2	2	3	2	2	2	3	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CLCA2,NS,carcinoma,0,1	CLCA2	NM_006536	exon11	c.G1717T	p.G573W	CAGCCTGGGCACT	.	69	3	58	0	.	0	T	86913194	G	T	86913194	3	4	1	1	0	0	0	0	1	0	0	0	3481	1348	47	3	1759	3	CLCA2	1	86913194	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	19125906	86913194	162337427	6	6											
PDE4DIP	9659	hgsc.bcm.edu	37	chr1	144879561	144879561	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgttgtgctcctcacActctgaaaaaagacaaagat	14	9	9	9	0	2	3	1	1	1	2	3	4	3	3	1	1	1	3	1	1	4	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PDE4DIP_ENST00000369356,NS,carcinoma,0,7	PDE4DIP_ENST00000369356	NM_014644	exon27	c.T3889C	p.C1297R	CCTCACACTCTGA	.	92	6	60	2	.	0	G	144879561	A	G	144879561	3	3	1	1	0	0	0	0	1	0	0	0	11690	159	6	4	3223	4	PDE4DIP	1	144879561	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	57966367	144879561	104371060	7	7											
SV2A	9900	hgsc.bcm.edu	37	chr1	149879665	149879665	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaagttacatgctctacGcgctccccggggaacacttt	10	11	8	12	3	1	0	0	0	1	0	2	1	2	1	2	2	4	3	2	2	5	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SV2A,colon,carcinoma,0,1	SV2A	NM_014849	exon9	c.C1473A	p.R491R	CTCTACGCGCTCC	.	41	2	32	0	.	0	T	149879665	G	T	149879665	2	4	1	1	0	0	0	0	0	0	0	1	15473	1074	38	2		2	SV2A	1	149879665	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5000104	149879665	99370956	8	8											
MUC1	4582	hgsc.bcm.edu	37	chr1	155161733	155161733	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cgaggtgacaccgtgggctgGgggggcggtggagcccgggg	4	4	24	9	4	0	1	0	1	0	0	0	3	0	2	2	9	1	1	2	9	0	0	rs113445744	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC1_ENST00000368395,extremity,malignant_melanoma,0,3	MUC1_ENST00000368395	NM_001204286	exon2	c.C427G	p.P143A	GGGCTGGGGGGGC	.	12	3	10	1	.	0	C	155161733	G	C	155161733	3	2	1	1	0	0	0	0	1	0	0	0	10018	1247	43	5		5	MUC1	1	155161733	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5282068	155161733	94088888	9	9											
NES	10763	hgsc.bcm.edu	37	chr1	156642556	156642556	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	catccttagcctctaaactgGagtggtcagggctgaggggt	8	10	14	9	0	2	1	1	1	1	0	3	2	3	2	2	5	2	1	2	5	3	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	NES,NS,haematopoietic_neoplasm,+1,1	NES	NM_006617	exon4	c.C1424A	p.S475Y	AAACTGGAGTGGT	.	39	3	49	0	.	+1	T	156642556	G	T	156642556	3	4	1	1	0	0	0	0	1	0	0	0	10384	1174	41	3	3445	3	NES	1	156642556	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	1480823	156642556	92608065	10	10											
FCRLA	84824	hgsc.bcm.edu	37	chr1	161682007	161682007	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagctagagatcagagtgcaGggtgagttcgcatcagagtg	11	8	15	7	1	2	4	2	1	0	3	3	5	2	4	0	1	2	4	0	1	1	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FCRLA_ENST00000367959,NS,carcinoma,0,2	FCRLA_ENST00000367959	NM_001184866	exon5	c.G852T	p.Q284H	AGTGCAGGGTGAG	.	22	2	12	0	.	0	T	161682007	G	T	161682007	3	4	1	1	0	0	0	0	1	0	0	0	5833	1014	35	3	870	3	FCRLA	1	161682007	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5039451	161682007	87568614	11	11											
PRG4	10216	hgsc.bcm.edu	37	chr1	186276262	186276262	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggagcctgcacccaccAccaaggagcctgcacccacc	11	2	8	20	0	0	0	0	0	0	0	0	2	0	2	8	2	4	2	8	2	2	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_005807	exon7	c.A1411C	p.T471P	CCCACCACCAAGG	.	63	0	56	0	.	259	C	186276262	A	C	186276262	3	2	1	1	0	0	0	0	1	0	0	0	12533	159	6	4	1433	4	PRG4	1	186276262	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	24594255	186276262	62974359	12	12											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214557314	214557314	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccgtggtgcttggtggccgtGaggggctcgctcacctcctg	2	10	16	13	3	1	1	1	1	0	0	3	1	2	1	4	5	1	3	4	5	0	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005401	exon13	c.C1884T	p.L628L	GGCCGTGAGGGGC	.	33	7	16	0	.	.	A	214557314	G	A	214557314	2	1	1	1	0	0	0	0	0	0	0	1	12833	1277	45	3		3	PTPN14	1	214557314	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	28281052	214557314	34693307	13	13											
TARBP1	6894	hgsc.bcm.edu	37	chr1	234569297	234569297	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aacaccatcaggtataaatgGcaacgatccagatctgaaac	17	7	7	10	1	2	2	1	1	1	1	3	3	3	2	2	2	3	2	2	2	6	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005646	exon14	c.C2253A	p.C751X	TAAATGGCAACGA	.	99	4	58	0	.	.	T	234569297	G	T	234569297	4	4	1	1	0	0	0	0	0	1	0	0	15612	1195	42	3	2680	3	TARBP1	1	234569297	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	20011983	234569297	14681324	14	14											
OR2T12	127064	broad.mit.edu;bcgsc.ca	37	chr1	248458309	248458309	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	acatggcgttttcgaagactGaagtgtcagcacaagccaaa	14	8	10	9	2	1	2	1	1	0	1	2	3	1	2	1	1	2	2	1	1	4	2	rs138674715		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	OR2T12	NM_001004692	exon1	c.C572T	p.S191L	AAGACTGAAGTGT	.	83	12	64	0	G|1.000;A|0.000	113	A	248458309	G	A	248458309	3	1	1	1	0	0	0	0	1	0	0	0	11067	1294	45	3	393	3	OR2T12	1	248458309	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	13889012	248458309	792312	15	15											
GREB1	9687	hgsc.bcm.edu	37	chr2	11735403	11735403	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accaagcccggattctttccGagagccttctcactcctgcg	7	10	8	16	3	2	1	1	0	2	1	5	3	4	2	5	1	3	0	5	1	1	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014668	exon12	c.G1723T	p.E575X	CTTTCCGAGAGCC	.	99	4	57	0	.	.	T	11735403	G	T	11735403	4	4	1	1	0	0	0	0	0	1	0	0	6801	1059	37	2	1873	2	GREB1	2	11735403	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		11735403	231463970	16	16											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21246522	21246522	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgaagatgtagtgaaGaaaaaagtcattctttgagc	15	11	9	6	0	2	5	1	3	1	2	3	5	3	5	1	0	1	1	1	0	6	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon17	c.C2479A	p.L827I	AGTGAAGAAAAAA	.	84	10	64	0	.	0	T	21246522	G	T	21246522	3	4	1	1	0	0	0	0	1	0	0	0	782	942	33	3	11264	3	APOB	2	21246522	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	9511119	21246522	221952851	17	17											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27310211	27310211	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagtaccctaaggaggactcGgagataaggtaggggcgccc	12	5	15	9	2	0	1	0	0	0	1	1	4	0	3	2	6	1	2	2	6	5	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_006488	exon1	c.G84A	p.S28S	GGACTCGGAGATA	.	61	18	59	0	.	.	A	27310211	G	A	27310211	2	1	1	1	0	0	0	0	0	0	0	1	8191	1103	39	1		1	KHK	2	27310211	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	6063689	27310211	215889162	18	18											
GALNT14	79623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	31168695	31168695	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atgtaggtgaaggtgtccagGttaatgatatcgatcacagg	12	11	13	5	1	1	2	1	2	0	0	3	3	2	2	1	4	0	2	1	4	4	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001253826	exon8	c.C711T	p.N237N	GTCCAGGTTAATG	.	68	10	79	0	.	.	A	31168695	G	A	31168695	2	1	1	1	0	0	0	0	0	0	0	1	6252	1252	44	3		3	GALNT14	2	31168695	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	3858484	31168695	212030678	19	19											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54858390	54858390	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caagctgcagcagttcctacGggacttggacgacttccagt	9	9	11	12	2	0	0	0	0	0	0	2	3	2	2	2	2	4	4	2	2	2	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_003128	exon16	c.G3206T	p.R1069L	TCCTACGGGACTT	.	35	7	39	0	.	.	T	54858390	G	T	54858390	3	4	1	1	0	0	0	0	1	0	0	0	15175	1116	39	2	3377	2	SPTBN1	2	54858390	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	23689695	54858390	188340983	20	20											
USP34	9736	broad.mit.edu	37	chr2	61484067	61484067	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataaaactcttcagcagtttGactaacatgttcacaatcct	14	13	4	10	0	3	1	2	1	1	0	4	1	4	1	1	0	3	3	1	0	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	USP34	NM_014709	exon47	c.C6067A	p.Q2023K	CAGTTTGACTAAC	.	148	4	125	0	.	334	T	61484067	G	T	61484067	3	4	1	1	0	0	0	0	1	0	0	0	17125	1299	45	3	4709	3	USP34	2	61484067	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	6625677	61484067	181715306	21	21											
AAK1	22848	hgsc.bcm.edu	37	chr2	69741753	69741753	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtggccagctgttgctgttgCtgttgttgttgctgctgctg	1	17	15	8	0	0	0	0	0	0	0	0	0	0	0	1	1	6	11	1	1	0	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014911	exon13	c.G1626A	p.Q542Q	CTGTTGCTGTTGT	.	41	4	40	0	.	.	T	69741753	C	T	69741753	2	4	1	1	0	0	0	0	0	0	0	1	16	796	28	3		3	AAK1	2	69741753	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	8257686	69741753	173457620	22	22											
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	143799625	143799625	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttccccacagtgtgacaagCggaatccaaatggcattcga	12	9	9	11	2	0	1	0	1	0	0	3	3	2	2	3	2	1	1	3	2	3	2	rs147475752	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199241	exon15	c.C1282G	p.R428G	GACAAGCGGAATC	.	107	20	86	0	.	.	G	143799625	C	G	143799625	3	3	1	1	0	0	0	0	1	0	0	0	8626	759	27	5	1358	5	KYNU	2	143799625	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	74057872	143799625	99399748	23	23											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	167269613	167269613	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaattcataatagtgaTccatccattaaatgttgcct	12	15	6	8	0	1	2	1	2	0	0	3	2	3	2	3	0	2	2	3	0	5	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002976	exon21	c.A3433G	p.I1145V	TAGTGATCCATCC	.	94	11	84	0	.	.	C	167269613	T	C	167269613	3	2	1	1	0	0	0	0	1	0	0	0	13977	1435	50	4	1635	4	SCN7A	2	167269613	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	23469988	167269613	75929760	24	24											
XIRP2	129446	hgsc.bcm.edu	37	chr2	168104887	168104887	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgggtttcttccctcaCtgtccacagagaagataaag	14	10	8	9	0	2	2	1	0	1	2	4	3	4	2	2	1	0	1	2	1	5	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_152381	exon9	c.C6985T	p.L2329L	CCCTCACTGTCCA	.	93	4	51	0	.	.	T	168104887	C	T	168104887	2	4	1	1	0	0	0	0	0	0	0	1	17490	564	20	3		3	XIRP2	2	168104887	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	835274	168104887	75094486	25	25											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	168115754	168115754	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ataatgaaaacacaggttttGatgctctgagccatgaatgt	14	12	9	6	0	1	4	0	4	1	0	1	4	1	4	1	1	3	2	1	1	4	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199143	exon11	c.G2797C	p.D933H	GGTTTTGATGCTC	.	56	8	58	0	.	.	C	168115754	G	C	168115754	3	2	1	1	0	0	0	0	1	0	0	0	17490	1290	45	5	12115	5	XIRP2	2	168115754	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	10867	168115754	75083619	26	26											
DFNB59	494513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179318221	179318221	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttccaagcctcagtgaagctGacaaatatcaacctctaagt	14	10	6	11	0	3	2	2	2	1	0	4	2	4	2	3	0	3	1	3	0	6	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001042702	exon2	c.G85A	p.D29N	GAAGCTGACAAAT	.	94	5	68	0	.	.	A	179318221	G	A	179318221	3	1	1	1	0	0	0	0	1	0	0	0	4484	1290	45	3	87	3	DFNB59	2	179318221	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	11202467	179318221	63881152	27	27											
FAM126B	285172	broad.mit.edu	37	chr2	201846200	201846200	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgctggtacttgcttgactGccatttacatagtcaaatga	11	14	8	8	0	1	2	1	2	0	0	1	2	1	2	1	1	5	3	1	1	4	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	FAM126B	NM_173822	exon12	c.C1386A	p.G462G	TTGACTGCCATTT	.	52	3	44	1	.	34	T	201846200	G	T	201846200	2	4	1	1	0	0	0	0	0	0	0	1	5461	1306	46	3		3	FAM126B	2	201846200	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	22527979	201846200	41353173	28	28											
CDK15	65061	hgsc.bcm.edu;bcgsc.ca	37	chr2	202672307	202672307	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cccagaagttcaagagtaaaAggccacggagtaacagtgat	16	6	11	8	1	1	3	1	1	0	2	1	4	1	4	2	2	1	3	2	2	5	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001261435	exon2	c.A214G	p.R72G	AGTAAAAGGCCAC	.	79	4	59	0	.	.	G	202672307	A	G	202672307	3	3	1	1	0	0	0	0	1	0	0	0	3153	63	3	4	63	4	CDK15	2	202672307	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	826107	202672307	40527066	29	29											
ABCA12	26154	bcgsc.ca	37	chr2	215851337	215851337	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccttcataaaagttcagattGaggttatcaacagcaacttt	14	13	6	8	0	3	2	3	1	0	1	3	2	3	2	1	1	3	3	1	1	5	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ABCA12,NS,carcinoma,0,1	ABCA12	NM_173076	exon28	c.C4092A	p.L1364L	CAGATTGAGGTTA	.	72	4	63	0	.	368	T	215851337	T	T	215851337	2	4	1	1	0	0	0	0	0	0	0	1	30	1277	45	3		3	ABCA12	2	215851337	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	13179030	215851337	27348036	30	30											
CXCR1	3577	hgsc.bcm.edu	37	chr2	219029811	219029811	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagggcataggcgatgatcaCaacatacttgttgagtgtct	11	12	11	7	1	2	2	1	2	1	0	2	3	2	2	0	2	2	2	0	2	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CXCR1,NS,carcinoma,0,1	CXCR1	NM_000634	exon2	c.G124A	p.V42M	TGATCACAACATA	.	29	2	24	0	.	0	T	219029811	C	T	219029811	3	4	1	1	0	0	0	0	1	0	0	0	4113	478	17	3	932	3	CXCR1	2	219029811	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3178474	219029811	24169562	31	31											
SLC19A3	80704	hgsc.bcm.edu	37	chr2	228564115	228564115	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagaactctacaacctgcaTggtcttcactccttggccaa	11	10	7	13	0	3	1	1	0	2	1	4	2	4	1	3	2	4	1	3	2	5	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC19A3,NS,carcinoma,0,1	SLC19A3	NM_025243	exon3	c.A316G	p.M106V	CCTGCATGGTCTT	.	58	4	41	0	.	0	C	228564115	T	C	228564115	3	2	1	1	0	0	0	0	1	0	0	0	14485	1464	51	4	1190	4	SLC19A3	2	228564115	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	9534304	228564115	14635258	32	32											
ANKRD28	23243	bcgsc.ca	37	chr3	15749477	15749477	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atagtgcaggggtgtgcagcCtctttcatcaaggtcattca	9	12	11	9	0	5	0	4	0	1	0	5	0	5	0	1	3	3	2	1	3	2	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ANKRD28	NM_015199	exon14	c.G1411T	p.G471C	TGCAGCCTCTTTC	.	31	4	29	0	.	121	A	15749477	A	A	15749477	3	1	1	1	0	0	0	0	1	0	0	0	652	681	24	3	1810	3	ANKRD28	3	15749477	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09		15749477	182272953	33	33											
TLR9	54106	bcgsc.ca	37	chr3	52255277	52255277	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagttccggttatagaagtGgtggttgtccctggtcaggg	7	12	16	6	1	1	1	1	0	0	1	3	2	3	1	2	5	0	3	2	5	4	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TLR9	NM_017442	exon2	c.C3055A	p.H1019N	AGAAGTGGTGGTT	.	23	4	36	0	.	72	T	52255277	T	T	52255277	3	4	1	1	0	0	0	0	1	0	0	0	16018	1348	47	3	47	3	TLR9	3	52255277	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	36505800	52255277	145767153	34	34											
FLNB	2317	hgsc.bcm.edu;bcgsc.ca	37	chr3	58095323	58095323	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtcaacatcgggcaaggtagCcatcctcagaaggtcaaagt	13	7	11	10	1	3	1	3	0	0	1	5	1	4	1	2	3	2	2	2	3	5	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001457	exon15	c.C2220T	p.S740S	AGGTAGCCATCCT	.	78	5	80	0	.	.	T	58095323	C	T	58095323	2	4	1	1	0	0	0	0	0	0	0	1	5967	738	26	3		3	FLNB	3	58095323	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	5840046	58095323	139927107	35	35											
CLDN16	10686	hgsc.bcm.edu	37	chr3	190106072	190106072	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccgccacttaagtggggccaGggctggtgtctgcccatgtt	5	10	14	12	1	1	0	0	0	1	0	1	0	1	0	4	4	1	2	4	4	1	2	rs201380153		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_006580	exon1	c.G164A	p.R55K	GGGCCAGGGCTGG	.	38	5	24	0	.	59	A	190106072	G	A	190106072	3	1	1	1	0	0	0	0	1	0	0	0	3500	1000	35	3	166	3	CLDN16	3	190106072	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	132010749	190106072	7916358	36	36											
RNF212	285498	hgsc.bcm.edu	37	chr4	1087255	1087255	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgggaaaactccaccctGcgtttgtgatgctcacctcc	7	10	9	15	2	1	1	1	1	0	0	3	2	3	2	4	1	4	2	4	1	2	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001193318	exon4	c.C794A	p.A265E	CACCCTGCGTTTG	.	109	4	112	0	.	.	T	1087255	G	T	1087255	3	4	1	1	0	0	0	0	1	0	0	0	13528	1334	46	3		3	RNF212	4	1087255	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		1087255	190067021	37	37											
FAM193A	8603	hgsc.bcm.edu	37	chr4	2698243	2698243	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggagggtggaggatttgttgCagtttataaatagctccgaa	11	12	14	4	1	0	0	0	0	0	0	1	4	1	3	1	4	2	4	1	4	5	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FAM193A,NS,NS,0,1	FAM193A	NM_001256667	exon17	c.C2623T	p.Q875X	TTGTTGCAGTTTA	.	80	4	70	0	.	0	T	2698243	C	T	2698243	4	4	1	1	0	0	0	0	0	1	0	0	5556	711	25	3	2611	3	FAM193A	4	2698243	Nonsense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	1610988	2698243	188456033	38	38											
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	chr4	3213728	3213728	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttctggtggccagaagagtGccctttttgaagcagcccgt	7	12	12	10	1	1	3	0	1	1	2	1	3	1	3	3	2	3	1	3	2	2	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002111	exon48	c.G6487T	p.A2163S	AAGAGTGCCCTTT	.	56	4	54	0	.	.	T	3213728	G	T	3213728	3	4	1	1	0	0	0	0	1	0	0	0	7501	1319	46	3	6677	3	HTT	4	3213728	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	515485	3213728	187940548	39	39											
CLNK	116449	hgsc.bcm.edu;bcgsc.ca	37	chr4	10560060	10560060	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttggcttctgacgtccttgGaaatgggtttgtccacctgt	5	16	11	9	1	1	1	0	1	1	0	3	2	3	2	3	3	0	2	3	3	1	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_052964	exon8	c.C416A	p.S139Y	TCCTTGGAAATGG	.	91	4	82	0	.	.	T	10560060	G	T	10560060	3	4	1	1	0	0	0	0	1	0	0	0	3570	1174	41	3	918	3	CLNK	4	10560060	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	7346332	10560060	180594216	40	40											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40122733	40122733	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttagctgaatgtcaagagcAaatgcctaagagagaccctg	14	8	11	8	0	1	4	1	1	0	3	1	5	1	4	2	0	3	3	2	0	5	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_018177	exon9	c.A3002G	p.Q1001R	AAGAGCAAATGCC	.	52	11	55	0	.	.	G	40122733	A	G	40122733	3	3	1	1	0	0	0	0	1	0	0	0	10158	130	5	4	3028	4	N4BP2	4	40122733	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	29562673	40122733	151031543	41	41											
ARHGEF38	54848	hgsc.bcm.edu;broad.mit.edu	37	chr4	106552107	106552107	+	Nonsense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaagatatttataaaatctaCtgctatcaccatgatgaagc	16	12	6	7	0	2	3	1	2	1	1	2	4	2	3	1	0	3	1	1	0	8	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001242729	exon4	c.C561G	p.Y187X	AATCTACTGCTAT	.	50	5	43	0	.	.	G	106552107	C	G	106552107	4	3	1	1	0	0	0	0	0	1	0	0	904	576	20	5	575	5	ARHGEF38	4	106552107	Nonsense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	66429374	106552107	84602169	42	42											
LARP1B	55132	broad.mit.edu	37	chr4	129121738	129121738	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccctctttcgtttctggtccTttttcctcagagatcacttc	4	18	5	14	1	4	1	2	0	2	1	8	2	6	1	3	1	0	1	3	1	0	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	LARP1B	NM_018078	exon17	c.T2227C	p.F743L	TGGTCCTTTTTCC	.	300	6	278	0	.	120	C	129121738	T	C	129121738	3	2	1	1	0	0	0	0	1	0	0	0	8668	1609	56	4	2419	4	LARP1B	4	129121738	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	22569631	129121738	62032538	43	43											
ADAM29	11086	bcgsc.ca	37	chr4	175898005	175898005	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcttttgggctttgttgCaaagactgcaagttcctacc	7	15	10	9	0	0	1	0	0	0	1	1	1	1	1	2	1	4	6	2	1	3	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ADAM29	NM_001130703	exon4	c.C1329T	p.C443C	TTGTTGCAAAGAC	.	50	4	39	0	.	262	T	175898005	T	T	175898005	2	4	1	1	0	0	0	0	0	0	0	1	246	718	25	3		3	ADAM29	4	175898005	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	46776267	175898005	15256271	44	44											
MLF1IP	79682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	185638302	185638302	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctacataccttttttgcactAatttttacagattcgatttc	10	19	3	9	1	0	1	0	0	0	1	2	2	0	1	1	0	4	1	1	0	4	11	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_024629	exon5	c.T369A	p.I123I	TGCACTAATTTTT	.	48	4	46	0	.	.	T	185638302	A	T	185638302	2	4	1	1	0	0	0	0	0	0	0	1	9663	358	13	5		5	MLF1IP	4	185638302	Silent	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	9740297	185638302	5515974	45	45											
ZDHHC11	79844	broad.mit.edu	37	chr5	825360	825360	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atcagcagggagctcttggcTttgactctggtgggacagaa	9	10	14	8	0	3	2	1	1	2	1	3	4	3	4	0	4	2	3	0	4	1	2	rs201174878		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ZDHHC11	NM_024786	exon8	c.A942G	p.K314K	CTTGGCTTTGACT	.	47	4	48	1	T|0.999;C|0.001	97	C	825360	T	C	825360	2	2	1	1	0	0	0	0	0	0	0	1	17659	1606	56	4		4	ZDHHC11	5	825360	Silent	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09		825360	180089900	46	46											
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1232354	1232354	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccttcctcatcccctacGtcatcgcgctggtcttcgag	4	11	10	16	4	3	0	2	0	1	0	7	1	5	0	4	2	1	1	4	2	1	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC6A18,NS,carcinoma,0,1	SLC6A18	NM_182632	exon2	c.G181A	p.V61I	CCCTACGTCATCG	.	53	4	46	0	.	0	A	1232354	G	A	1232354	3	1	1	1	0	0	0	0	1	0	0	0	14736	1145	40	1	187	1	SLC6A18	5	1232354	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	406994	1232354	179682906	47	47											
TRIO	7204	broad.mit.edu	37	chr5	14399006	14399006	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagggtttgatgaaaacattGagtctcagggagaactcatc	13	11	11	6	0	2	4	2	3	1	1	4	5	2	4	0	2	2	1	0	2	4	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TRIO	NM_007118	exon30	c.G4441T	p.E1481X	AACATTGAGTCTC	.	82	3	70	0	.	305	T	14399006	G	T	14399006	4	4	1	1	0	0	0	0	0	1	0	0	16613	1291	45	3	4559	3	TRIO	5	14399006	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	13166652	14399006	166516254	48	48											
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	56178366	56178366	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cccagtgacgagacagtgttCaccccagtagaggagaaatg	13	6	12	10	1	1	4	1	1	0	3	1	6	1	4	3	1	0	2	3	1	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005921	exon14	c.C3339T	p.F1113F	AGTGTTCACCCCA	.	57	6	41	0	.	.	T	56178366	C	T	56178366	2	4	1	1	0	0	0	0	0	0	0	1	9293	825	29	3		3	MAP3K1	5	56178366	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	41779360	56178366	124736894	49	49											
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	86672323	86672323	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aaccagggtccctgcgtgttCgagcacgatactctatggaa	10	9	11	11	3	1	0	0	0	1	0	3	3	2	1	2	2	4	2	2	2	4	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	RASA1_ENST00000456692,NS,carcinoma,0,2	RASA1_ENST00000456692	NM_002890	exon16	c.C2125T	p.R709X	CGTGTTCGAGCAC	.	123	25	114	0	.	0	T	86672323	C	T	86672323	4	4	1	1	0	0	0	0	0	1	0	0	13112	876	31	1	2199	1	RASA1	5	86672323	Nonsense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	30493957	86672323	94242937	50	50											
ANKRD32	84250	hgsc.bcm.edu	37	chr5	93966366	93966366	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gatggcgtgaagaactgaaaCgcactggtgctccaggagcc	11	6	14	10	2	0	3	0	2	0	1	1	5	1	4	2	3	4	2	2	3	3	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ANKRD32_ENST00000265140,colon,carcinoma,0,1	ANKRD32_ENST00000265140	NM_032290	exon4	c.C349T	p.R117C	CTGAAACGCACTG	.	46	2	50	0	.	0	T	93966366	C	T	93966366	3	4	1	1	0	0	0	0	1	0	0	0	655	536	19	1	359	1	ANKRD32	5	93966366	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	7294043	93966366	86948894	51	51											
FBN2	2201	hgsc.bcm.edu	37	chr5	127714472	127714472	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaactgccttaccaatgcatGcttgcttggtaggagtcctc	9	12	9	11	0	0	0	0	0	0	0	2	1	1	1	3	2	6	4	3	2	4	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FBN2_ENST00000508053,NS,carcinoma,0,1	FBN2_ENST00000508053	NM_001999	exon12	c.C1715A	p.A572E	ATGCATGCTTGCT	.	44	2	51	0	.	0	T	127714472	G	T	127714472	3	4	1	1	0	0	0	0	1	0	0	0	5736	1319	46	3	7239	3	FBN2	5	127714472	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	33748106	127714472	53200788	52	52											
AFF4	27125	hgsc.bcm.edu	37	chr5	132228047	132228047	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaaggaacaggcccagCgggagaaggcaacaaatcct	14	6	12	9	1	0	2	0	1	0	1	1	4	1	3	2	4	3	1	2	4	5	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	AFF4,right_upper_lobe,carcinoma,0,1	AFF4	NM_014423	exon13	c.G2446T	p.A816S	GCCCAGCGGGAGA	.	40	2	35	0	.	0	A	132228047	C	A	132228047	3	1	1	1	0	0	0	0	1	0	0	0	358	768	27	2	1081	2	AFF4	5	132228047	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	4513575	132228047	48687213	53	53											
PCDHB8	56128	hgsc.bcm.edu	37	chr5	140559572	140559572	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggacaatggcgagcctccgTgctcggccaccgccacgctg	7	5	13	16	5	0	0	0	0	0	0	2	2	1	1	5	3	2	2	5	3	1	0	rs17844504	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PCDHB8,NS,malignant_melanoma,0,1	PCDHB8	NM_019120	exon1	c.T1957C	p.C653R	CCTCCGTGCTCGG	.	98	5	72	0	.	0	C	140559572	T	C	140559572	3	2	1	1	0	0	0	0	1	0	0	0	11595	1696	59	4	1959	4	PCDHB8	5	140559572	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	8331525	140559572	40355688	54	54											
CSF1R	1436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149450020	149450020	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcggccccagcactcacaTcgaagggtgagctcaaacgt	10	6	11	14	3	2	1	2	1	0	0	4	2	2	1	2	2	3	3	2	2	2	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005211	exon8	c.A1197G	p.R399R	CTCACATCGAAGG	.	38	5	30	0	.	.	C	149450020	T	C	149450020	2	2	1	1	0	0	0	0	0	0	0	1	3957	1449	50	4		4	CSF1R	5	149450020	Silent	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	8890448	149450020	31465240	55	55											
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	26411341	26411341	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttttttcattgtagggggAgagagacattcagcctataa	11	14	10	6	0	2	2	2	0	0	2	2	4	2	2	1	2	1	1	1	2	3	8	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_007048	exon8	c.A969G	p.G323G	AGGGGGAGAGAGA	.	74	4	52	0	.	.	G	26411341	A	G	26411341	2	3	1	1	0	0	0	0	0	0	0	1	1565	291	11	4		4	BTN3A1	6	26411341	Silent	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09		26411341	144703726	56	56											
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	29693309	29693309	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gtggtcactggagctgtggtCgctgctgtgatgtggaggaa	6	11	18	6	1	1	1	1	1	0	0	2	4	1	4	0	5	2	3	0	5	1	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001098479	exon5	c.C972T	p.V324V	TGTGGTCGCTGCT	.	76	5	42	0	.	.	T	29693309	C	T	29693309	2	4	1	1	0	0	0	0	0	0	0	1	7252	871	31	1		1	HLA-F	6	29693309	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3281968	29693309	141421758	57	57											
MUC21	394263	bcgsc.ca	37	chr6	30954572	30954572	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cagcacaacctccagtggggCcagcacagccaccaactctg	11	4	9	17	0	1	0	0	0	1	0	2	0	2	0	5	2	5	2	5	2	2	0	rs146037191	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC21,NS,malignant_melanoma,0,2	MUC21	NM_001010909	exon2	c.C620T	p.A207V	GTGGGGCCAGCAC	.	151	13	86	2	C|0.998;T|0.002	98	T	30954572	T	T	30954572	3	4	1	1	0	0	0	0	1	0	0	0	10025	739	26	3	626	3	MUC21	6	30954572	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	1261263	30954572	140160495	58	58											
POLH	5429	bcgsc.ca	37	chr6	43581551	43581551	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagctaagacccagggaagtGgcccagcggtgacagccact	12	4	13	12	1	0	2	0	1	0	1	0	3	0	3	3	3	3	1	3	3	3	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	POLH	NM_006502	exon11	c.G1399T	p.G467C	GGAAGTGGCCCAG	.	44	4	36	0	.	54	T	43581551	T	T	43581551	3	4	1	1	0	0	0	0	1	0	0	0	12250	1348	47	3	1437	3	POLH	6	43581551	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	12626979	43581551	127533516	59	59											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390463	45390463	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caacagcagcagcagcagcaGcaacagcagcagcagcagca	16	0	11	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	0	0	2	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.G192A	p.Q64Q	GCAGCAGCAACAG	.	48	3	41	0	.	0	A	45390463	G	A	45390463	2	1	1	1	0	0	0	0	0	0	0	1	13800	962	34	3		3	RUNX2	6	45390463	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	1808912	45390463	125724604	60	60											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	51921499	51921499	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaagccacggacagcacctcGttcaaatccaagccggagaa	14	4	10	13	3	1	1	1	0	0	1	3	4	2	2	4	2	3	2	4	2	4	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_170724	exon18	c.C1690T	p.R564X	CACCTCGTTCAAA	.	82	13	55	0	.	.	A	51921499	G	A	51921499	4	1	1	1	0	0	0	0	0	1	0	0	12019	1153	40	1	10773	1	PKHD1	6	51921499	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	6531036	51921499	119193568	61	61											
DST	667	hgsc.bcm.edu	37	chr6	56464980	56464980	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagaagatcacatatcccttGgagtttctctttatactcct	11	15	5	10	0	2	2	1	0	1	2	5	3	4	3	2	1	1	1	2	1	5	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_015548	exon26	c.C3712A	p.Q1238K	TCCCTTGGAGTTT	.	107	5	73	0	.	.	T	56464980	G	T	56464980	3	4	1	1	0	0	0	0	1	0	0	0	4809	1357	47	3	12039	3	DST	6	56464980	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	4543481	56464980	114650087	62	62											
ZNF292	23036	hgsc.bcm.edu	37	chr6	87964852	87964852	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgggctttctggtggagttgGtgctaattctggccttctta	4	17	13	7	0	3	0	0	0	3	0	3	1	3	1	1	5	1	3	1	5	2	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_015021	exon8	c.G1505T	p.G502V	GAGTTGGTGCTAA	.	64	3	38	0	.	.	T	87964852	G	T	87964852	3	4	1	1	0	0	0	0	1	0	0	0	17883	1261	44	3	1535	3	ZNF292	6	87964852	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	31499872	87964852	83150215	63	63											
LAMA4	3910	hgsc.bcm.edu	37	chr6	112510361	112510361	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggttcaaaaccttcttccaaGcattctccggttacactgtc	9	13	6	13	1	3	0	1	0	2	0	6	0	4	0	3	2	3	3	3	2	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001105206	exon7	c.C765A	p.C255X	TTCCAAGCATTCT	.	87	3	57	0	.	.	T	112510361	G	T	112510361	4	4	1	1	0	0	0	0	0	1	0	0	8647	963	34	3	4838	3	LAMA4	6	112510361	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	24545509	112510361	58604706	64	64											
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	116957009	116957009	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gattcttcaaggaatcttctCggctgtaaagacttgagaag	12	12	10	7	1	4	2	1	1	3	2	5	5	4	3	0	2	0	2	0	2	5	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_145062	exon10	c.G1723A	p.E575K	TCTTCTCGGCTGT	.	42	4	33	0	.	.	T	116957009	C	T	116957009	3	4	1	1	0	0	0	0	1	0	0	0	18286	893	31	1	17	1	ZUFSP	6	116957009	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	4446648	116957009	54158058	65	65											
AIG1	51390	bcgsc.ca	37	chr6	143382350	143382350	+	Splice_Site	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctcgcctcttccccaGtgattgcgtgtgaaggcctg	4	12	12	13	2	1	2	0	2	1	0	4	2	3	2	5	1	1	0	5	1	1	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	AIG1	.	.	.	.	TCCCCAGTGATTG	.	58	4	42	0	.	24	T	143382350	T	T	143382350	5	4	1	1	0	0	0	0	0	0	1	0	426	1044	36	3		3	AIG1	6	143382350	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	26425341	143382350	27732717	66	66											
SHPRH	257218	hgsc.bcm.edu	37	chr6	146268687	146268687	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagtatgtgtcagaatcagaGccaaaacctccactgtcttt	12	11	8	10	0	3	2	2	0	1	2	4	3	4	2	3	0	2	1	3	0	4	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_173082	exon6	c.C1154A	p.A385D	ATCAGAGCCAAAA	.	52	3	67	0	.	.	T	146268687	G	T	146268687	3	4	1	1	0	0	0	0	1	0	0	0	14346	971	34	3	4041	3	SHPRH	6	146268687	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2886337	146268687	24846380	67	67											
DLL1	28514	hgsc.bcm.edu	37	chr6	170597856	170597856	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaatctgtgtggagagcttCaataatcagagagaaggtgc	14	9	13	5	0	3	4	2	0	1	4	3	6	3	4	0	2	2	1	0	2	4	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005618	exon3	c.G373T	p.E125X	GAGCTTCAATAAT	.	105	4	91	0	.	.	A	170597856	C	A	170597856	4	1	1	1	0	0	0	0	0	1	0	0	4594	835	29	3	1834	3	DLL1	6	170597856	Nonsense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	24329169	170597856	517211	68	68											
PKD1L1	168507	hgsc.bcm.edu	37	chr7	47876572	47876572	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagacacgcgtagacgcacaGcagggagaaggacacggtga	14	2	16	9	4	0	4	0	1	0	3	0	7	0	5	0	3	1	3	0	3	2	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PKD1L1,NS,carcinoma,0,1	PKD1L1	NM_138295	exon37	c.C5890A	p.L1964M	CGCACAGCAGGGA	.	45	2	36	0	.	0	T	47876572	G	T	47876572	3	4	1	1	0	0	0	0	1	0	0	0	12012	962	34	3	2743	3	PKD1L1	7	47876572	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		47876572	111262091	69	69											
DNAJC2	27000	hgsc.bcm.edu;bcgsc.ca	37	chr7	102953518	102953518	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaagcttctgttcttctGttgtccaaggggtgaagtct	8	14	10	9	0	4	1	0	1	4	0	5	1	5	1	2	2	1	3	2	2	4	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014377	exon16	c.C1667A	p.T556K	TCTTCTGTTGTCC	.	57	4	52	0	.	.	T	102953518	G	T	102953518	3	4	1	1	0	0	0	0	1	0	0	0	4666	1377	48	3	206	3	DNAJC2	7	102953518	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	55076946	102953518	56185145	70	70											
CAV1	857	hgsc.bcm.edu	37	chr7	116199003	116199003	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacttcttccttttagattGactttgaagatgtgattgca	9	18	7	7	0	2	5	1	3	1	2	3	5	3	5	1	0	1	1	1	0	2	7	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CAV1,NS,neuroblastoma,0,1	CAV1	NM_001753	exon3	c.G199T	p.D67Y	TAGATTGACTTTG	.	42	3	29	0	.	0	T	116199003	G	T	116199003	3	4	1	1	0	0	0	0	1	0	0	0	2711	1290	45	3	209	3	CAV1	7	116199003	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	13245485	116199003	42939660	71	71											
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142960620	142960620	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagcatggggcccctgcCgcgcaccgtggagctcttct	4	8	13	16	3	2	0	0	0	2	0	2	1	2	1	4	3	4	4	4	3	0	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GSTK1_ENST00000479303,NS,haematopoietic_neoplasm,0,4	GSTK1_ENST00000479303	NM_001143681	exon1	c.C14T	p.P5L	CCCTGCCGCGCAC	.	44	5	41	0	.	0	T	142960620	C	T	142960620	3	4	1	1	0	0	0	0	1	0	0	0	6877	652	23	1	16	1	GSTK1	7	142960620	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	26761617	142960620	16178043	72	72											
EZH2	2146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	148523609	148523609	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgcctacagaaaagcgtatGaaaggagtgtaagctttgct	13	10	11	7	2	0	2	0	1	0	1	1	3	0	3	1	1	4	4	1	1	6	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001203247	exon8	c.C844A	p.H282N	GCGTATGAAAGGA	.	69	5	44	0	.	.	T	148523609	G	T	148523609	3	4	1	1	0	0	0	0	1	0	0	0	5362	1290	45	3	1463	3	EZH2	7	148523609	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5562989	148523609	10615054	73	73											
SSPO	23145	hgsc.bcm.edu	37	chr7	149503932	149503932	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cccgggatagatagagtgtaCgggcttctgcgcccccggct	6	8	14	13	4	1	2	0	0	1	2	1	3	1	3	3	3	2	3	3	3	3	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_198455	exon60	c.C8756T	p.T2919M	AGTGTACGGGCTT	.	67	4	61	0	.	.	T	149503932	C	T	149503932	3	4	1	1	0	0	0	0	1	0	0	0	15245	547	19	1	8990	1	SSPO	7	149503932	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	980323	149503932	9634731	74	74											
GALNTL5	168391	hgsc.bcm.edu	37	chr7	151680104	151680104	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cattacccagcccgcctcccGactgccagcattgtcatttg	7	10	7	17	2	1	0	1	0	0	0	2	1	2	0	5	0	4	1	5	0	1	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GALNTL5,NS,carcinoma,0,1	GALNTL5	NM_145292	exon4	c.G402A	p.P134P	CCTCCCGACTGCC	.	64	3	57	0	.	0	A	151680104	G	A	151680104	2	1	1	1	0	0	0	0	0	0	0	1	6264	1045	37	1		1	GALNTL5	7	151680104	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2176172	151680104	7458559	75	75											
PCM1	5108	broad.mit.edu	37	chr8	17797227	17797227	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gcaggcttgttcaaattcgcGattatattactaaagctagt	12	14	8	7	2	1	0	1	0	0	0	2	1	1	0	0	1	2	4	0	1	7	8	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PCM1	NM_006197	exon6	c.G640A	p.D214N	ATTCGCGATTATA	.	101	4	106	0	.	120	A	17797227	G	A	17797227	3	1	1	1	0	0	0	0	1	0	0	0	11631	1058	37	1	654	1	PCM1	8	17797227	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		17797227	128566795	76	76											
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	22145050	22145050	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttattttccagccccaatgtGgagtgcaaaagcatgaggtt	11	12	10	8	0	0	1	0	1	0	0	1	2	1	2	3	2	3	3	3	2	4	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001135721	exon7	c.G753T	p.V251V	CAATGTGGAGTGC	.	61	6	47	0	.	.	T	22145050	G	T	22145050	2	4	1	1	0	0	0	0	0	0	0	1	12006	1335	47	3		3	PIWIL2	8	22145050	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	4347823	22145050	124218972	77	77											
PBK	55872	hgsc.bcm.edu	37	chr8	27690596	27690596	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atttctttttttctgataatTtgcttggtgtcttgaaatta	8	23	6	4	0	3	2	0	2	3	0	3	2	3	2	0	1	1	1	0	1	3	9	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PBK_ENST00000301905,colon,carcinoma,0,2	PBK_ENST00000301905	NM_018492	exon2	c.A35T	p.K12I	GATAATTTGCTTG	.	35	2	36	0	.	0	A	27690596	T	A	27690596	3	1	1	1	0	0	0	0	1	0	0	0	11535	1841	64	5	961	5	PBK	8	27690596	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	5545546	27690596	118673426	78	78											
C8orf34	116328	broad.mit.edu;bcgsc.ca	37	chr8	69621314	69621314	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatcccagattcattcGgtaagttttaagtccaacaa	17	11	5	8	1	1	1	1	0	0	1	4	1	3	1	2	1	1	2	2	1	7	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	C8orf34	NM_052958	exon9	c.G1327A	p.D443N	TCATTCGGTAAGT	.	34	4	39	0	.	170	A	69621314	G	A	69621314	5	1	1	1	0	0	0	0	0	0	1	0	2439	1130	39	1	1024	1	C8orf34	8	69621314	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	41930718	69621314	76742708	79	79											
NBN	4683	broad.mit.edu	37	chr8	90983510	90983510	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tagatggttcatcaagaggtGggtaaaaactgtaaaaataa	18	10	10	3	0	2	2	2	0	0	2	2	2	2	2	0	3	1	3	0	3	9	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	NBN	NM_002485	exon6	c.C593A	p.P198Q	AGAGGTGGGTAAA	.	173	5	158	0	.	86	T	90983510	G	T	90983510	3	4	1	1	0	0	0	0	1	0	0	0	10239	1348	47	3	1715	3	NBN	8	90983510	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	21362196	90983510	55380512	80	80											
PDP1	54704	broad.mit.edu;ucsc.edu	37	chr8	94935050	94935050	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccttggaggcgcaagttggtGatcctaattcttttctcaac	8	14	9	10	1	2	1	1	1	2	0	4	2	3	2	2	3	1	2	2	3	3	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PDP1	NM_001161780	exon3	c.G838A	p.D280N	GTTGGTGATCCTA	.	29	4	13	0	.	97	A	94935050	G	A	94935050	3	1	1	1	0	0	0	0	1	0	0	0	11732	1290	45	3	946	3	PDP1	8	94935050	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	3951540	94935050	51428972	81	81											
SCRIB	23513	broad.mit.edu	37	chr8	144887183	144887183	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caatgcgggagacgaagatgCcctgcaggggagggtggagg	10	4	20	7	2	0	2	0	0	0	2	0	6	0	4	1	6	3	1	1	6	2	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SCRIB	NM_015356	exon20	c.G2672A	p.G891D	AAGATGCCCTGCA	.	25	3	15	0	.	192	T	144887183	C	T	144887183	5	4	1	1	0	0	0	0	0	0	1	0	13991	753	26	3	2367	3	SCRIB	8	144887183	Splice_Site	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	49952133	144887183	1476839	82	82											
KCNV2	169522	broad.mit.edu	37	chr9	2718784	2718784	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccatcctgccgctctaccttCagctgctgctcgagtgcttc	4	12	8	17	2	2	0	1	0	1	0	5	1	3	0	4	0	6	5	4	0	1	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	KCNV2	NM_133497	exon1	c.C1045T	p.Q349X	TACCTTCAGCTGC	.	51	3	36	0	.	72	T	2718784	C	T	2718784	4	4	1	1	0	0	0	0	0	1	0	0	8139	827	29	3	1047	3	KCNV2	9	2718784	Nonsense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09		2718784	138494647	83	83											
TTF1	7270	hgsc.bcm.edu	37	chr9	135277219	135277219	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttttttcttagacttGtttttataagcaggtgctgg	6	22	8	5	0	2	1	0	0	2	1	2	1	2	1	0	2	2	3	0	2	3	11	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TTF1,NS,lymphoid_neoplasm,0,1	TTF1	NM_007344	exon2	c.C990A	p.N330K	AGACTTGTTTTTA	.	40	10	22	1	.	0	T	135277219	G	T	135277219	3	4	1	1	0	0	0	0	1	0	0	0	16780	1368	48	3	1767	3	TTF1	9	135277219	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	132558435	135277219	5936212	84	84											
CEL	1056	hgsc.bcm.edu	37	chr9	135947131	135947131	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	actccaaggaagctcagatgCctgcagtcattaggttttag	11	11	10	9	0	2	1	2	0	0	1	3	2	3	2	2	2	3	3	2	2	4	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CEL,caecum,carcinoma,0,1	CEL	NM_001807	exon11	c.C2251A	p.P751T	CAGATGCCTGCAG	.	48	2	51	0	.	0	A	135947131	C	A	135947131	3	1	1	1	0	0	0	0	1	0	0	0	3231	739	26	3	2293	3	CEL	9	135947131	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	669912	135947131	5266300	85	85											
ASCC1	51008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	73956736	73956736	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aattacaccatttcgatgctGgccagtgattactgtaaaca	13	12	7	9	1	0	1	0	1	0	0	1	2	0	1	2	1	4	2	2	1	5	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001198799	exon6	c.C406T	p.Q136X	GATGCTGGCCAGT	.	108	11	75	0	.	.	A	73956736	G	A	73956736	4	1	1	1	0	0	0	0	0	1	0	0	1030	1357	47	3	775	3	ASCC1	10	73956736	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		73956736	61578011	86	86											
NFKB2	4791	hgsc.bcm.edu	37	chr10	104157319	104157319	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctggagcaagaggccaaaGaactgaagaaggtgatggat	16	5	15	5	0	0	5	0	2	0	3	0	7	0	7	1	4	3	2	1	4	5	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	NFKB2,NS,carcinoma,0,1	NFKB2	NM_001077494	exon8	c.G538T	p.E180X	GCCAAAGAACTGA	.	33	2	27	0	.	0	T	104157319	G	T	104157319	4	4	1	1	0	0	0	0	0	1	0	0	10423	943	33	3	564	3	NFKB2	10	104157319	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	30200583	104157319	31377428	87	87											
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	116734973	116734973	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	gcccttcctgaagacaaatgGacaattgatgacattgcaca	14	9	8	10	0	0	4	0	3	0	1	1	5	1	5	2	1	1	1	2	1	3	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TRUB1,NS,carcinoma,0,1	TRUB1	NM_139169	exon8	c.G885A	p.W295X	CAAATGGACAATT	.	60	8	54	0	.	0	A	116734973	G	A	116734973	4	1	1	1	0	0	0	0	0	1	0	0	16663	1183	41	3	915	3	TRUB1	10	116734973	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	12577654	116734973	18799774	88	88											
CPXM2	119587	hgsc.bcm.edu	37	chr10	125601975	125601975	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcccgcgcaccacgctccGtcataaaaatcattttcatt	10	12	4	15	4	3	0	3	0	0	0	5	0	5	0	3	0	0	2	3	0	3	5	rs17679897	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CPXM2,NS,carcinoma,0,1	CPXM2	NM_198148	exon4	c.C543A	p.D181E	CGCTCCGTCATAA	.	52	3	36	0	.	0	T	125601975	G	T	125601975	3	4	1	1	0	0	0	0	1	0	0	0	3861	1136	40	2	1771	2	CPXM2	10	125601975	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	8867002	125601975	9932772	89	89											
DOCK1	1793	hgsc.bcm.edu;bcgsc.ca	37	chr10	128817096	128817096	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggtttccggagataatcatgCctggtaagaactggcttgtt	9	13	12	7	1	1	2	1	0	0	2	2	3	2	2	2	4	2	4	2	4	3	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001380	exon13	c.C1261T	p.P421S	ATCATGCCTGGTA	.	67	4	40	0	.	.	T	128817096	C	T	128817096	3	4	1	1	0	0	0	0	1	0	0	0	4711	739	26	3	1311	3	DOCK1	10	128817096	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3215121	128817096	6717651	90	90											
CHID1	66005	hgsc.bcm.edu	37	chr11	884165	884165	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaacatgcccagctggtCggtcctgtaacagacaggtg	9	8	13	11	2	0	2	0	1	0	1	2	2	1	2	2	3	4	2	2	3	2	1	rs143837907	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CHID1,NS,carcinoma,0,1	CHID1	NM_001142676	exon10	c.G781T	p.D261Y	GCTGGTCGGTCCT	.	36	3	26	0	.	0	A	884165	C	A	884165	3	1	1	1	0	0	0	0	1	0	0	0	3367	884	31	2	495	2	CHID1	11	884165	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09		884165	134122351	91	91											
MUC6	4588	bcgsc.ca	37	chr11	1016916	1016916	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtgtggtgaagggtgtgggtAgcctgctgctgctggccgag	4	10	20	7	1	0	1	0	1	0	0	0	2	0	1	2	4	4	4	2	4	2	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MUC6	NM_005961	exon31	c.T5885C	p.L1962P	GTGGGTAGCCTGC	.	292	14	213	3	.	408	G	1016916	G	G	1016916	3	3	1	1	0	0	0	0	1	0	0	0	10028	420	15	4	1446	4	MUC6	11	1016916	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	132751	1016916	133989600	92	92											
MUC2	4583	bcgsc.ca	37	chr11	1092845	1092845	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaccccaacacccaccggcaCacagaccccaacaacgacac	16	0	4	21	2	0	1	0	0	0	1	0	2	0	1	6	1	4	1	6	1	4	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MUC2	NM_002457	exon30	c.C4664T	p.T1555I	CCGGCACACAGAC	.	628	17	325	3	.	614	T	1092845	T	T	1092845	3	4	1	1	0	0	0	0	1	0	0	0	10023	478	17	3	4782	3	MUC2	11	1092845	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	75929	1092845	133913671	93	93											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1255536	1255536	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acacgctggacgtgggctgtGtgagttccatgcttcaggga	7	10	15	9	2	1	1	1	1	0	0	2	3	2	3	1	3	1	4	1	3	0	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002458	exon20	c.2478+1G>T	.	GGCTGTGTGAGTT	.	62	5	38	0	.	.	T	1255536	G	T	1255536	5	4	1	1	0	0	0	0	0	0	1	0	10027	1391	48	3	2566	3	MUC5B	11	1255536	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	162691	1255536	133750980	94	94											
OR51A4	401666	broad.mit.edu	37	chr11	4967834	4967834	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcttgcaatatctcaagtttCttaaagtgaaagggaaggga	14	12	10	5	0	3	1	1	1	3	0	4	3	3	3	0	2	1	2	0	2	7	4	rs201205025		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	OR51A4,colon,carcinoma,-1,1	OR51A4	NM_001005329	exon1	c.G497C	p.R166T	AAGTTTCTTAAAG	.	70	3	54	1	.	73	G	4967834	C	G	4967834	3	3	1	1	0	0	0	0	1	0	0	0	11135	913	32	5	446	5	OR51A4	11	4967834	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3712298	4967834	130038682	95	95											
SLC43A3	29015	broad.mit.edu	37	chr11	57177487	57177487	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gatgaaggtgaggtactggaGagggaggatggggactgagg	11	6	22	2	0	0	4	0	3	0	1	0	9	0	7	0	8	1	1	0	8	2	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SLC43A3	NM_017611	exon12	c.C1168G	p.L390V	ACTGGAGAGGGAG	.	55	3	31	0	.	54	C	57177487	G	C	57177487	3	2	1	1	0	0	0	0	1	0	0	0	14689	942	33	5	319	5	SLC43A3	11	57177487	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	52209653	57177487	77829029	96	96											
FEN1	2237	ucsc.edu	37	chr11	61563066	61563066	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cattcgcatgatggagaacgGcatcaagcccgtgtatgtct	10	10	11	10	3	2	2	1	1	1	1	3	3	2	2	1	2	2	3	1	2	3	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	FEN1	NM_004111	exon2	c.G233A	p.G78D	AGAACGGCATCAA	.	42	4	21	0	.	15	A	61563066	G	A	61563066	3	1	1	1	0	0	0	0	1	0	0	0	5845	1203	42	3	235	3	FEN1	11	61563066	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	4385579	61563066	73443450	97	97											
MAP3K11	4296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	65373425	65373425	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcaggtactcacctcccattCtgggcttccccaggcttggg	5	11	10	15	0	3	0	2	0	1	0	5	0	5	0	4	4	1	3	4	4	1	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MAP3K11,NS,carcinoma,0,1	MAP3K11	NM_002419	exon7	c.G1731C	p.Q577H	CCCATTCTGGGCT	.	62	5	30	0	.	0	G	65373425	C	G	65373425	3	3	1	1	0	0	0	0	1	0	0	0	9295	912	32	5	828	5	MAP3K11	11	65373425	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3810359	65373425	69633091	98	98											
CCDC15	80071	hgsc.bcm.edu	37	chr11	124862504	124862504	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcttttatgagagaagaaaGagtgagagaagaattgcctc	16	10	11	4	0	1	7	0	2	1	5	2	9	1	7	1	0	1	0	1	0	5	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_025004	exon10	c.G2060T	p.R687I	AAGAAAGAGTGAG	.	82	4	48	0	.	.	T	124862504	G	T	124862504	3	4	1	1	0	0	0	0	1	0	0	0	2802	942	33	3	2094	3	CCDC15	11	124862504	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	59489079	124862504	10144012	99	99											
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6471245	6471245	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagacctggttgaagcGgcaggcgaagatgaagttgc	11	6	17	7	2	0	4	0	2	0	2	0	6	0	4	1	4	2	4	1	4	3	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001159576	exon3	c.C1024A	p.R342S	TGAAGCGGCAGGC	.	41	6	30	0	.	.	T	6471245	G	T	6471245	3	4	1	1	0	0	0	0	1	0	0	0	13981	1116	39	2	1202	2	SCNN1A	12	6471245	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		6471245	127380650	100	100											
MGST1	4257	hgsc.bcm.edu	37	chr12	16516728	16516728	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatagttatctttttccacaGagcccacctgaatgaccttg	11	13	6	11	0	1	3	0	2	1	1	2	3	2	3	4	0	1	1	4	0	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_145792	exon4	c.222-1G>T	.	TCCACAGAGCCCA	.	95	4	67	0	.	.	T	16516728	G	T	16516728	5	4	1	1	0	0	0	0	0	0	1	0	9609	956	33	3	231	3	MGST1	12	16516728	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	10045483	16516728	117335167	101	101											
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	22089573	22089573	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaccatcgttgatattataTgaagaaatgttgttaccaca	15	13	6	7	1	0	3	0	2	0	1	1	3	0	3	2	0	1	3	2	0	6	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005691	exon1	c.A36G	p.S12S	ATTATATGAAGAA	.	74	7	58	0	.	.	C	22089573	T	C	22089573	2	2	1	1	0	0	0	0	0	0	0	1	59	1451	51	4		4	ABCC9	12	22089573	Silent	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	5572845	22089573	111762322	102	102											
KIF21A	55605	hgsc.bcm.edu;bcgsc.ca	37	chr12	39752014	39752014	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagctccatctgaagtcgtGtgatttcactacgaagtgca	10	12	10	9	2	2	3	1	3	1	0	4	4	3	3	1	0	3	2	1	0	3	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001173463	exon8	c.C1181A	p.T394K	AGTCGTGTGATTT	.	90	4	72	0	.	.	T	39752014	G	T	39752014	3	4	1	1	0	0	0	0	1	0	0	0	8330	1377	48	3	3967	3	KIF21A	12	39752014	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	17662441	39752014	94099881	103	103											
GXYLT1	283464	ucsc.edu;bcgsc.ca	37	chr12	42512938	42512938	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcaactacagctagaTgcattttctcaacaggctgt	12	10	8	11	0	1	1	1	0	1	1	2	1	1	1	0	2	5	4	0	2	4	4	rs200822565		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	Q8IXV1_HUMAN,NS,carcinoma,0,4	GXYLT1	NM_173601	exon3	c.A350T	p.H117L	GCTAGATGCATTT	.	87	12	71	1	.	47	A	42512938	T	A	42512938	3	1	1	1	0	0	0	0	1	0	0	0	6944	1464	51	5	996	5	GXYLT1	12	42512938	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	2760924	42512938	91338957	104	104											
ANKRD33	341405	broad.mit.edu	37	chr12	52284827	52284827	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	gccagggagtccccagaggtCcccgtgggtcttcgtcccct	4	8	13	16	2	1	1	0	0	1	1	5	2	4	2	7	3	0	0	7	3	0	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ANKRD33	NM_182608	exon5	c.C1097T	p.S366F	AGAGGTCCCCGTG	.	20	3	21	0	.	33	T	52284827	C	T	52284827	3	4	1	1	0	0	0	0	1	0	0	0	656	855	30	3	1145	3	ANKRD33	12	52284827	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	9771889	52284827	81567068	105	105											
PIP4K2C	79837	hgsc.bcm.edu	37	chr12	57994636	57994636	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggactacagccttctgctaGgcatccacgacatcattcgg	9	10	9	13	2	2	0	1	0	1	0	4	2	3	1	2	3	3	2	2	3	2	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_001146258	exon8	c.G856T	p.G286C	CTGCTAGGCATCC	.	43	2	23	0	.	50	T	57994636	G	T	57994636	3	4	1	1	0	0	0	0	1	0	0	0	11986	1000	35	3	886	3	PIP4K2C	12	57994636	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5709809	57994636	75857259	106	106											
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	73015434	73015434	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgatatctagagaactacgtAgagaagttataatgctggcc	14	11	10	6	1	1	3	0	1	1	2	1	5	1	3	1	1	3	3	1	1	8	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_013381	exon15	c.A2443G	p.R815G	CTACGTAGAGAAG	.	47	7	46	0	.	.	G	73015434	A	G	73015434	3	3	1	1	0	0	0	0	1	0	0	0	16540	412	15	4	2501	4	TRHDE	12	73015434	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	15020798	73015434	60836461	107	107											
NAP1L1	4673	broad.mit.edu	37	chr12	76444323	76444323	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgcttacatcatcatcatcAtcttcaatagcttctccagt	10	15	3	13	1	7	0	5	0	2	0	9	0	7	0	1	0	2	2	1	0	3	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	NAP1L1	NM_004537	exon12	c.T1047A	p.D349E	ATCATCATCTTCA	.	70	3	60	0	.	33	T	76444323	A	T	76444323	3	4	1	1	0	0	0	0	1	0	0	0	10204	214	8	5	144	5	NAP1L1	12	76444323	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	3428889	76444323	57407572	108	108											
ACACB	32	hgsc.bcm.edu	37	chr12	109644547	109644547	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acaggagaactccctgcccaGcagacactgcccatcctcgg	10	5	9	17	1	0	2	0	0	0	2	3	3	2	2	4	2	4	1	4	2	1	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ACACB,right_upper_lobe,carcinoma,0,1	ACACB	NM_001093	exon19	c.G2946T	p.Q982H	TGCCCAGCAGACA	.	50	2	48	0	.	0	T	109644547	G	T	109644547	3	4	1	1	0	0	0	0	1	0	0	0	107	962	34	3	3020	3	ACACB	12	109644547	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	33200224	109644547	24207348	109	109											
TMED2	10959	bcgsc.ca	37	chr12	124069354	124069354	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gagggcggcttcctggacatCgacgtggaggtgcgggctag	6	7	19	9	4	0	0	0	0	0	0	2	4	1	2	1	6	1	2	1	6	1	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TMED2	NM_006815	exon1	c.C171T	p.I57I	GGACATCGACGTG	.	44	4	33	0	.	19	T	124069354	T	T	124069354	2	4	1	1	0	0	0	0	0	0	0	1	16064	874	31	1		1	TMED2	12	124069354	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	14424807	124069354	9782541	110	110											
ENOX1	55068	broad.mit.edu	37	chr13	43930059	43930059	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cgtgggtggcccatacctttCagcttttcagccagcagagc	7	10	11	13	1	2	1	2	0	0	1	2	1	2	1	3	2	5	2	3	2	1	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ENOX1_ENST00000261488,NS,carcinoma,-1,2	ENOX1	NM_017993	exon8	c.G819A	p.L273L	ACCTTTCAGCTTT	.	39	4	34	0	.	158	T	43930059	C	T	43930059	2	4	1	1	0	0	0	0	0	0	0	1	5154	813	29	3		3	ENOX1	13	43930059	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09		43930059	71239819	111	111											
PCDH20	64881	hgsc.bcm.edu	37	chr13	61986532	61986532	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gaaaatatgaaacttggcctCtctcctcgctgtcggcatct	9	12	8	12	2	2	1	0	1	2	0	6	2	3	1	2	2	1	2	2	2	4	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PCDH20_ENST00000409186,NS,carcinoma,0,2	PCDH20_ENST00000409186	NM_022843	exon2	c.G1700A	p.R567K	TGGCCTCTCTCCT	.	40	2	27	0	.	0	T	61986532	C	T	61986532	3	4	1	1	0	0	0	0	1	0	0	0	11562	913	32	3	1159	3	PCDH20	13	61986532	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	18056473	61986532	53183346	112	112											
OTX2	5015	broad.mit.edu	37	chr14	57269033	57269033	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccattctgctgttgttgcTgttgttggcggcacttagct	3	17	11	10	1	1	0	0	0	1	0	2	0	2	0	1	2	3	8	1	2	1	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	OTX2	NM_001270525	exon3	c.A314T	p.Q105L	TGTTGCTGTTGTT	.	54	5	44	0	.	47	A	57269033	T	A	57269033	3	1	1	1	0	0	0	0	1	0	0	0	11368	1580	55	5	583	5	OTX2	14	57269033	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09		57269033	50080507	113	113											
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	73140954	73140954	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggccacactcaccagagcGtccacagtctgcgcaggaca	10	4	12	15	2	2	1	1	0	1	1	3	2	3	2	3	3	2	1	3	3	0	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_012074	exon8	c.C865T	p.R289C	CAGAGCGTCCACA	.	58	5	48	0	.	.	A	73140954	G	A	73140954	3	1	1	1	0	0	0	0	1	0	0	0	4745	1145	40	1	216	1	DPF3	14	73140954	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	15871921	73140954	34208586	114	114											
TMED8	283578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	77810058	77810058	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	acctttcctgtggtcccccaGaagatctgcagattccaaat	10	11	7	13	0	1	3	0	0	1	3	4	3	4	3	5	1	1	1	5	1	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_213601	exon4	c.C436T	p.L146L	CCCCCAGAAGATC	.	69	7	62	0	.	.	A	77810058	G	A	77810058	2	1	1	1	0	0	0	0	0	0	0	1	16071	933	33	3		3	TMED8	14	77810058	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	4669104	77810058	29539482	115	115											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	89220900	89220900	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaagctataccatgtgtatGaacatcctttaaaactgata	15	12	6	8	0	0	2	0	2	0	0	1	2	1	2	2	0	4	3	2	0	8	6	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_183387	exon2	c.C313A	p.H105N	GTGTATGAACATC	.	110	11	89	0	.	.	T	89220900	G	T	89220900	3	4	1	1	0	0	0	0	1	0	0	0	5128	1290	45	3	5788	3	EML5	14	89220900	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	11410842	89220900	18128640	116	116											
JAG2	3714	broad.mit.edu	37	chr14	105612177	105612177	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcttctgcgccgcacTccccccaggcctcacagggt	4	8	11	18	2	3	0	1	0	2	0	4	0	4	0	5	3	1	2	5	3	0	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	JAG2	NM_002226	exon23	c.A2843G	p.E948G	CCGCACTCCCCCC	.	94	3	73	1	.	69	C	105612177	T	C	105612177	3	2	1	1	0	0	0	0	1	0	0	0	7979	1551	54	4	889	4	JAG2	14	105612177	Missense_Mutation	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09	16391277	105612177	1737363	117	117											
GABRB3	2562	hgsc.bcm.edu	37	chr15	26812850	26812850	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atccaatgttcctcttcaacCgaaagctcagtgacagtcga	12	10	7	12	2	3	1	2	1	1	0	6	3	5	1	3	0	2	2	3	0	3	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GABRB3_ENST00000541819,rectum,carcinoma,-1,3	GABRB3_ENST00000541819	NM_021912	exon7	c.G713T	p.R238L	TTCAACCGAAAGC	.	46	2	36	0	.	-1	A	26812850	C	A	26812850	3	1	1	1	0	0	0	0	1	0	0	0	6203	652	23	2	720	2	GABRB3	15	26812850	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09		26812850	75718542	118	118											
DMXL2	23312	hgsc.bcm.edu	37	chr15	51809289	51809289	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttttacttggttggttattgCgtcgagttcaataatgcagc	8	17	10	6	2	1	0	1	0	0	0	2	1	1	0	0	2	4	4	0	2	4	8	rs199866251	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	DMXL2,colon,carcinoma,0,2	DMXL2	NM_001174117	exon14	c.G2512A	p.A838T	TTATTGCGTCGAG	.	87	3	80	0	.	0	T	51809289	C	T	51809289	3	4	1	1	0	0	0	0	1	0	0	0	4623	768	27	1	6721	1	DMXL2	15	51809289	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	24996439	51809289	50722103	119	119											
TBC1D2B	23102	hgsc.bcm.edu	37	chr15	78305220	78305220	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccgccaggagaaggcgaggaGgacattgcgtaacttctgta	11	7	14	9	3	1	1	0	0	1	1	1	5	1	3	2	4	2	2	2	4	3	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TBC1D2B_ENST00000300584,colon,carcinoma,0,2	TBC1D2B_ENST00000300584	NM_144572	exon9	c.C2215A	p.L739I	CGAGGAGGACATT	.	36	2	22	0	.	0	T	78305220	G	T	78305220	3	4	1	1	0	0	0	0	1	0	0	0	15676	1000	35	3	696	3	TBC1D2B	15	78305220	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	26495931	78305220	24226172	120	120											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	85401487	85401487	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gagatttctccctaaggtcaGagcagcaggagacggggagg	11	6	16	8	1	2	3	1	0	1	3	3	6	2	4	1	5	2	2	1	5	1	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_020778	exon6	c.G4124C	p.R1375T	AGGTCAGAGCAGC	.	187	15	120	0	.	.	C	85401487	G	C	85401487	3	2	1	1	0	0	0	0	1	0	0	0	542	942	33	5	4146	5	ALPK3	15	85401487	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	7096267	85401487	17129905	121	121											
ADAMTS17	170691	hgsc.bcm.edu;bcgsc.ca	37	chr15	100802574	100802574	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tacgggacgttgtcgtagcaGgacaagcttggtcacttgaa	10	10	13	8	3	1	1	1	1	0	0	2	3	1	3	0	3	3	4	0	3	4	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_139057	exon5	c.C856A	p.L286M	GTAGCAGGACAAG	.	59	4	48	0	.	.	T	100802574	G	T	100802574	3	4	1	1	0	0	0	0	1	0	0	0	261	991	35	3	2503	3	ADAMTS17	15	100802574	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	15401087	100802574	1728818	122	122											
SNX29	92017	hgsc.bcm.edu	37	chr16	12093200	12093200	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttctgctggagcgactgctGgatgcagtgaaacaggtaag	10	10	14	7	1	1	1	0	1	1	0	1	4	1	3	0	3	5	4	0	3	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_032167	exon2	c.G54T	p.L18L	ACTGCTGGATGCA	.	63	3	46	0	.	.	T	12093200	G	T	12093200	2	4	1	1	0	0	0	0	0	0	0	1	14952	1335	47	3		3	SNX29	16	12093200	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		12093200	78261553	123	123											
TOX3	27324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	52473515	52473515	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcatctgttgttgttgCtgctgctgctgctgctgcaa	3	17	12	9	0	1	0	0	0	1	0	1	0	1	0	0	0	8	12	0	0	1	4	rs374335680		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001080430	exon7	c.G1353A	p.Q451Q	TTGTTGCTGCTGC	.	48	4	34	0	.	.	T	52473515	C	T	52473515	2	4	1	1	0	0	0	0	0	0	0	1	16440	796	28	3		3	TOX3	16	52473515	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	40380315	52473515	37881238	124	124											
PRMT7	54496	hgsc.bcm.edu	37	chr16	68355328	68355328	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	actgacttttttgttttttaGgtcatcttatgcagatatgc	8	20	7	6	0	2	2	1	1	1	1	2	2	2	2	0	1	2	2	0	1	3	8	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001184824	exon3	c.96-1G>T	.	TTTTTAGGTCATC	.	99	4	100	0	.	.	T	68355328	G	T	68355328	5	4	1	1	0	0	0	0	0	0	1	0	12593	1014	35	3	101	3	PRMT7	16	68355328	Splice_Site	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	15881813	68355328	21999425	125	125											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71015307	71015307	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtactacctgtgaggttcctGgggagatcgaggcagatttg	8	11	15	7	1	0	3	0	1	0	2	2	5	1	3	2	4	2	3	2	4	2	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001270974	exon29	c.C4497T	p.P1499P	GTTCCTGGGGAGA	.	71	9	47	0	.	.	A	71015307	G	A	71015307	2	1	1	1	0	0	0	0	0	0	0	1	7511	1335	47	3		3	HYDIN	16	71015307	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2659979	71015307	19339446	126	126											
GLG1	2734	hgsc.bcm.edu	37	chr16	74502875	74502875	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctccacacggagctgcctgCggcacttcagggacaccctg	7	6	11	17	2	1	0	1	0	0	0	2	2	2	2	4	3	3	2	4	3	0	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GLG1,NS,carcinoma,0,1	GLG1	NM_001145667	exon17	c.G2405A	p.R802H	TGCCTGCGGCACT	.	42	3	39	0	.	0	T	74502875	C	T	74502875	3	4	1	1	0	0	0	0	1	0	0	0	6478	768	27	1	1254	1	GLG1	16	74502875	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3487568	74502875	15851878	127	127											
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	77353780	77353780	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcatttgtgggccctggcGcgtacagacgttccgggcgg	4	10	15	12	5	1	1	1	0	1	1	3	1	2	1	2	4	1	2	2	4	1	3	rs147816593		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ADAMTS18,rectum,carcinoma,0,3	ADAMTS18	NM_199355	exon16	c.C2498T	p.A833V	CCTGGCGCGTACA	.	70	6	49	0	0.000	0	A	77353780	G	A	77353780	3	1	1	1	0	0	0	0	1	0	0	0	262	1087	38	1	1199	1	ADAMTS18	16	77353780	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2850905	77353780	13000973	128	128											
ZCCHC14	23174	bcgsc.ca	37	chr16	87446484	87446484	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gctggcctcattctgcacagGgagaacctgggccgtgggtc	6	8	15	12	1	2	1	1	0	1	1	3	2	2	1	3	4	2	2	3	4	1	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ZCCHC14	NM_015144	exon12	c.C1432A	p.P478T	GCACAGGGAGAAC	.	41	4	30	0	.	87	T	87446484	T	T	87446484	3	4	1	1	0	0	0	0	1	0	0	0	17642	1232	43	3	1425	3	ZCCHC14	16	87446484	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	10092704	87446484	2908269	129	129											
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7357773	7357773	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accttctcagtcatccttagTgtcgtggttctcaacctgca	7	14	7	13	1	3	0	3	0	2	0	7	0	4	0	3	1	2	2	3	1	2	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_000747	exon8	c.T978C	p.S326S	CCTTAGTGTCGTG	.	39	5	27	0	.	.	C	7357773	T	C	7357773	2	2	1	1	0	0	0	0	0	0	0	1	3412	1693	59	4		4	CHRNB1	17	7357773	Silent	SNP	T	TCGA-3X-AAV9-01A-72D-A417-09		7357773	73837437	130	130											
SUPT6H	6830	hgsc.bcm.edu	37	chr17	27008381	27008381	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaacgccgccaaagctagccGcaagaagctgaagcgtgtca	13	4	12	12	4	1	2	1	1	0	1	1	3	1	2	3	0	5	3	3	0	6	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SUPT6H,NS,carcinoma,0,1	SUPT6H	NM_003170	exon12	c.G1457A	p.R486H	CTAGCCGCAAGAA	.	46	2	35	0	.	0	A	27008381	G	A	27008381	3	1	1	1	0	0	0	0	1	0	0	0	15456	1087	38	1	1499	1	SUPT6H	17	27008381	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	19650608	27008381	54186829	131	131											
KRTAP4-3	85290	hgsc.bcm.edu	37	chr17	39324095	39324095	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagatacagcaggaaggcctGcagcaactagaaatgcagca	16	4	12	9	0	0	2	0	0	0	2	0	4	0	3	1	2	7	5	1	2	5	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_033187	exon1	c.C330T	p.C110C	AGGCCTGCAGCAA	.	87	4	88	0	.	.	A	39324095	G	A	39324095	2	1	1	1	0	0	0	0	0	0	0	1	8595	1311	46	3		3	KRTAP4-3	17	39324095	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	12315714	39324095	41871115	132	132											
CDC27	996	hgsc.bcm.edu	37	chr17	45234357	45234357	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttattttgaacctgtttaGataatatggaagttcctgtt	10	19	8	4	0	0	2	0	1	0	1	1	3	1	3	2	1	1	4	2	1	6	10	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001114091	exon7	c.C764A	p.S255Y	TGTTTAGATAATA	.	120	4	79	0	.	.	T	45234357	G	T	45234357	3	4	1	1	0	0	0	0	1	0	0	0	3088	942	33	3	1780	3	CDC27	17	45234357	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	5910262	45234357	35960853	133	133											
AKAP1	8165	hgsc.bcm.edu	37	chr17	55195744	55195744	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttccttttcctcctgaagacGatgaccagttttcaccggaa	9	13	7	12	2	1	3	1	2	0	1	4	5	4	4	5	1	0	1	5	1	2	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	AKAP1,middle_lobe,carcinoma,0,2	AKAP1	NM_001242902	exon10	c.G2503A	p.D835N	GAAGACGATGACC	.	46	2	26	0	.	0	A	55195744	G	A	55195744	3	1	1	1	0	0	0	0	1	0	0	0	442	1058	37	1	2533	1	AKAP1	17	55195744	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	9961387	55195744	25999466	134	134											
PRR11	55771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	57247159	57247159	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gaaagctaaaagccaaagccGaaagattattcaaaaaaaaa	24	5	6	6	1	1	1	1	0	0	1	1	3	1	1	2	0	3	1	2	0	10	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_018304	exon2	c.G46A	p.E16K	AAAGCCGAAAGAT	.	138	11	101	0	.	.	A	57247159	G	A	57247159	3	1	1	1	0	0	0	0	1	0	0	0	12635	1059	37	1	48	1	PRR11	17	57247159	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2051415	57247159	23948051	135	135											
KIF19	124602	broad.mit.edu	37	chr17	72340424	72340424	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggctacctggagctgcgggaGgactctaagggggtgatcca	8	7	17	9	1	1	1	0	1	1	0	2	4	2	4	2	6	3	2	2	6	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	KIF19	NM_153209	exon6	c.G519T	p.E173D	GCGGGAGGACTCT	.	34	3	21	0	.	102	T	72340424	G	T	72340424	3	4	1	1	0	0	0	0	1	0	0	0	8324	991	35	3	541	3	KIF19	17	72340424	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	15093265	72340424	8854786	136	136											
KIAA0195	9772	hgsc.bcm.edu	37	chr17	73482012	73482012	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gctcctgcttccactggccgGgggcctcactcatgctactg	4	10	11	16	1	2	0	2	0	0	0	4	0	4	0	4	3	3	3	4	3	1	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014738	exon4	c.G205T	p.G69W	TGGCCGGGGGCCT	.	100	4	75	0	.	.	T	73482012	G	T	73482012	3	4	1	1	0	0	0	0	1	0	0	0	8202	1232	43	3	215	3	KIAA0195	17	73482012	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	1141588	73482012	7713198	137	137											
GPS1	2873	hgsc.bcm.edu	37	chr17	80012466	80012466	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacggcctgggtggaggccaCgcggaagaaggcgctgctga	8	4	18	11	4	0	2	0	1	0	1	0	4	0	4	2	6	1	2	2	6	2	0	rs139982509		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_212492	exon4	c.C509T	p.T170M	AGGCCACGCGGAA	.	97	4	83	0	0.000	.	T	80012466	C	T	80012466	3	4	1	1	0	0	0	0	1	0	0	0	6773	536	19	1	572	1	GPS1	17	80012466	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	6530454	80012466	1182744	138	138											
ROCK1	6093	broad.mit.edu	37	chr18	18608854	18608854	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtcatcaaaattactaGtatcaatgtcactacttaaa	17	12	3	9	0	4	0	4	0	0	0	4	0	4	0	1	0	2	1	1	0	10	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ROCK1	NM_005406	exon10	c.C1094G	p.T365S	TTACTAGTATCAA	.	67	3	39	0	.	162	C	18608854	G	C	18608854	3	2	1	1	0	0	0	0	1	0	0	0	13569	1029	36	5	3066	5	ROCK1	18	18608854	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		18608854	59468394	139	139											
PRR22	163154	broad.mit.edu	37	chr19	5784655	5784655	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagctgcaggggcacagaacGgtttggggtgctgcatgggg	7	7	20	7	1	0	1	0	0	0	1	0	2	0	1	0	7	5	6	0	7	1	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PRR22	NM_001134316	exon1	c.C17T	p.P6L	CAGAACGGTTTGG	.	30	3	14	0	.	25	A	5784655	G	A	5784655	3	1	1	1	0	0	0	0	1	0	0	0	12645	1116	39	1	1263	1	PRR22	19	5784655	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		5784655	53344328	140	140											
ADAMTS10	81794	ucsc.edu	37	chr19	8651483	8651483	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aatcggtcccagggcttcgaGgctctggacctggtctggcc	5	9	14	13	2	2	0	0	0	2	0	5	2	3	1	3	6	0	2	3	6	1	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ADAMTS10	NM_030957	exon20	c.C2362A	p.L788I	CTTCGAGGCTCTG	.	32	4	23	0	.	132	T	8651483	G	T	8651483	3	4	1	1	0	0	0	0	1	0	0	0	255	1000	35	3	977	3	ADAMTS10	19	8651483	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2866828	8651483	50477500	141	141											
TSPAN16	26526	hgsc.bcm.edu;bcgsc.ca	37	chr19	11408920	11408920	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccgcatacctccttcacgttGgcaacctgtgcctggtgatg	6	11	10	14	2	1	1	1	1	0	0	2	1	2	1	5	2	3	3	5	2	2	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_012466	exon2	c.G172T	p.G58C	CACGTTGGCAACC	.	64	4	48	0	.	.	T	11408920	G	T	11408920	3	4	1	1	0	0	0	0	1	0	0	0	16701	1348	47	3	178	3	TSPAN16	19	11408920	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	2757437	11408920	47720063	142	142											
OR7A5	26659	hgsc.bcm.edu	37	chr19	14938184	14938184	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atgtctttattcctcagactAtagataaaggggttcagcat	12	14	8	7	0	3	2	2	0	1	2	4	2	4	2	1	2	1	2	1	2	5	7	rs200531878		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	OR7A5,NS,carcinoma,0,1	OR7A5	NM_017506	exon1	c.T870C	p.Y290Y	CAGACTATAGATA	.	75	3	53	0	0.001	0	G	14938184	A	G	14938184	2	3	1	1	0	0	0	0	0	0	0	1	11263	456	16	4		4	OR7A5	19	14938184	Silent	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	3529264	14938184	44190799	143	143											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu	37	chr19	22157034	22157034	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttagtaaggattgcagattGgttaaaagccttgccacatt	12	14	9	6	0	0	1	0	0	0	1	0	2	0	2	2	2	3	3	2	2	4	8	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_007153	exon4	c.C802T	p.Q268X	CAGATTGGTTAAA	.	55	5	45	0	.	.	A	22157034	G	A	22157034	4	1	1	1	0	0	0	0	0	1	0	0	17824	1357	47	3	3044	3	ZNF208	19	22157034	Nonsense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	7218850	22157034	36971949	144	144											
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	41183174	41183174	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcctctcgctcagcaggccgCccacccccagacaggcggaa	8	3	11	19	3	2	1	1	0	1	1	3	2	2	2	5	3	1	2	5	3	1	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_004756	exon7	c.G693A	p.G231G	AGGCCGCCCACCC	.	71	5	65	0	.	.	T	41183174	C	T	41183174	2	4	1	1	0	0	0	0	0	0	0	1	10800	726	26	3		3	NUMBL	19	41183174	Silent	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	19026140	41183174	17945809	145	145											
MARK4	57787	hgsc.bcm.edu;bcgsc.ca	37	chr19	45790748	45790748	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccccaaacgcagcccgacGagcacgggggaggcggagct	10	1	15	15	5	0	0	0	0	0	0	0	4	0	2	3	4	4	3	3	4	1	0	rs112982501	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199867	exon13	c.G1320T	p.T440T	CCCGACGAGCACG	.	70	4	63	0	.	.	T	45790748	G	T	45790748	2	4	1	1	0	0	0	0	0	0	0	1	9365	1045	37	2		2	MARK4	19	45790748	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	4607574	45790748	13338235	146	146											
KCNJ14	3770	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	48967866	48967866	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cacagcctcaagtctagtttCcccggctctctgactgcatt	7	12	7	15	1	3	1	1	1	2	0	5	1	4	1	3	1	2	3	3	1	2	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_013348	exon3	c.G1143T	p.Q381H	TAGTTTCCCCGGC	.	24	6	24	0	.	.	T	48967866	C	T	48967866	3	4	1	1	0	0	0	0	1	0	0	0	8092	854	30	3	1149	3	KCNJ14	19	48967866	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	3177118	48967866	10161117	147	147											
ZNF610	162963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52852438	52852438	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aaacagtcatgctatgtgatGaagaagcccagaagaggaaa	18	6	11	6	0	1	5	1	2	0	3	1	6	1	6	1	1	3	1	1	1	6	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001161427	exon3	c.G13A	p.E5K	TGTGATGAAGAAG	.	50	8	28	0	.	.	A	52852438	G	A	52852438	3	1	1	1	0	0	0	0	1	0	0	0	18093	1291	45	3	15	3	ZNF610	19	52852438	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	3884572	52852438	6276545	148	148											
C20orf26	26074	hgsc.bcm.edu	37	chr20	20056250	20056250	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctatcctcagctgcacgttcGcaaagccaggtacagttgga	10	9	10	12	2	1	0	1	0	0	0	3	1	2	1	2	2	4	6	2	2	3	4	rs200143211	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	C20orf26,caecum,carcinoma,0,1	C20orf26	NM_015585	exon6	c.G557T	p.R186L	ACGTTCGCAAAGC	.	46	2	44	0	.	0	T	20056250	G	T	20056250	3	4	1	1	0	0	0	0	1	0	0	0	2120	1087	38	2	575	2	C20orf26	20	20056250	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		20056250	42969270	149	149											
SLC13A3	64849	hgsc.bcm.edu	37	chr20	45192078	45192078	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaccagcaagtgtccaGaggcgaaggcgatggagttg	10	8	15	8	2	0	2	0	1	0	1	1	5	1	3	2	3	1	2	2	3	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC13A3,NS,carcinoma,0,1	SLC13A3	NM_022829	exon12	c.C1607A	p.S536Y	TGTCCAGAGGCGA	.	43	2	45	0	.	0	T	45192078	G	T	45192078	3	4	1	1	0	0	0	0	1	0	0	0	14448	942	33	3	209	3	SLC13A3	20	45192078	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	25135828	45192078	17833442	150	150											
SLC2A10	81031	hgsc.bcm.edu	37	chr20	45358084	45358084	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatttgttcctgaaacaaaaGgccagtcgttggcagagata	13	11	10	7	1	0	2	0	1	0	1	2	3	1	2	2	2	1	3	2	2	5	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_030777	exon4	c.G1504T	p.G502C	ACAAAAGGCCAGT	.	75	4	41	0	.	.	T	45358084	G	T	45358084	3	4	1	1	0	0	0	0	1	0	0	0	14594	1000	35	3	1518	3	SLC2A10	20	45358084	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	166006	45358084	17667436	151	151											
TUBB1	81027	bcgsc.ca	37	chr20	57594614	57594614	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atattcagattggccagtgtGgcaaccagatcggagccaag	12	8	12	9	1	1	2	1	0	0	2	2	3	1	3	3	3	2	1	3	3	3	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TUBB1	NM_030773	exon1	c.G37A	p.G13S	CAGTGTGGCAACC	.	53	4	36	0	.	42	A	57594614	A	A	57594614	3	1	1	1	0	0	0	0	1	0	0	0	16815	1348	47	3	39	3	TUBB1	20	57594614	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	12236530	57594614	5430906	152	152											
C2CD2	25966	hgsc.bcm.edu	37	chr21	43327232	43327232	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagcaggaacagggggaGggatgggccaggatttcaat	11	7	17	6	0	1	0	1	0	0	0	1	4	1	4	1	6	3	2	1	6	2	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_015500	exon10	c.C1187A	p.P396H	GGGGGAGGGATGG	.	35	3	36	0	.	47	T	43327232	G	T	43327232	3	4	1	1	0	0	0	0	1	0	0	0	2166	1000	35	3	923	3	C2CD2	21	43327232	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		43327232	4802663	153	153											
TXNRD2	10587	hgsc.bcm.edu	37	chr22	19865952	19865952	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagtggtttataatgggcGtgatagacctgaggacagga	11	10	14	6	1	0	3	0	2	0	1	1	5	1	5	2	4	0	1	2	4	3	4	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TXNRD2,NS,carcinoma,0,1	TXNRD2	.	p.H428H	.	.	ATGGGCGTGATAG	.	31	2	34	0	.	0	A	19865952	G	A	19865952	2	1	1	1	0	0	0	0	0	0	0	1	16870	1136	40	1		1	TXNRD2	22	19865952	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		19865952	31438614	154	154											
PI4KA	5297	hgsc.bcm.edu;bcgsc.ca	37	chr22	21153979	21153979	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcgctctcctgagagatGtagagccggttggacaggct	7	11	14	9	2	1	3	0	1	1	2	3	5	1	4	2	3	1	4	2	3	1	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_058004	exon15	c.C1800T	p.Y600Y	AGAGATGTAGAGC	.	45	4	29	0	.	.	A	21153979	G	A	21153979	2	1	1	1	0	0	0	0	0	0	0	1	11921	1372	48	3		3	PI4KA	22	21153979	Silent	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	1288027	21153979	30150587	155	155											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38323501	38323501	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gcgtggagagcctgtcgtctGagagcgccagccagactgca	8	6	15	12	3	1	3	0	1	1	3	2	5	1	3	3	1	4	1	3	1	0	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_033386	exon9	c.G1549C	p.E517Q	TCGTCTGAGAGCG	.	54	5	41	0	.	.	C	38323501	G	C	38323501	3	2	1	1	0	0	0	0	1	0	0	0	9621	1291	45	5	1583	5	MICALL1	22	38323501	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	17169522	38323501	12981065	156	156											
PKDREJ	10343	bcgsc.ca	37	chr22	46653730	46653730	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tagttttttgtgtcttctggGtcaatgccatatttggggtg	5	19	12	5	0	3	0	1	0	2	0	3	0	3	0	1	3	1	1	1	3	3	7	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PKDREJ	NM_006071	exon1	c.C5490A	p.D1830E	TTCTGGGTCAATG	.	48	4	50	0	.	195	T	46653730	T	T	46653730	3	4	1	1	0	0	0	0	1	0	0	0	12018	1252	44	3	1275	3	PKDREJ	22	46653730	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	8330229	46653730	4650836	157	157											
BCOR	54880	broad.mit.edu	37	chrX	39933623	39933623	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	caggagagctgtgtcccccgGcaggccactggtgaccgcct	6	6	14	15	2	0	2	0	1	0	1	1	3	1	2	5	4	1	2	5	4	0	0	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	BCOR	NM_001123385	exon4	c.C976A	p.P326T	CCCCCGGCAGGCC	.	32	4	21	0	.	351	T	39933623	G	T	39933623	3	4	1	1	0	0	0	0	1	0	0	0	1384	1203	42	3	4339	3	BCOR	23	39933623	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09		39933623	115336937	158	158											
ELK1	2002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47496463	47496463	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	gcaatgggactcagggtgctCcagaagtgaatgctaggagg	11	7	16	7	0	1	2	1	1	0	1	2	4	2	4	1	4	2	3	1	4	4	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001114123	exon6	c.G1137C	p.W379C	GGTGCTCCAGAAG	.	55	6	30	0	.	.	G	47496463	C	G	47496463	3	3	1	1	0	0	0	0	1	0	0	0	5087	856	30	5	157	5	ELK1	23	47496463	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	7562840	47496463	107774097	159	159											
SRPX2	27286	bcgsc.ca	37	chrX	99925824	99925824	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcaatttcagcgcctcactcGctcctacttcaacatggtgt	8	12	7	14	2	3	0	3	0	0	0	5	0	4	0	2	1	3	2	2	1	3	3	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SRPX2	NM_014467	exon11	c.G1238T	p.R413L	TCACTCGCTCCTA	.	50	4	32	0	.	41	T	99925824	T	T	99925824	3	4	1	1	0	0	0	0	1	0	0	0	15221	1087	38	2	1276	2	SRPX2	23	99925824	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	52429361	99925824	55344736	160	160											
MAGEC3	139081	ucsc.edu;bcgsc.ca	37	chrX	140984709	140984709	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgggatgccacctcttcccCagagtcctcctgagattcct	6	11	8	16	0	1	2	0	1	1	2	5	4	5	3	7	1	1	0	7	1	0	2	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MAGEC3	NM_138702	exon7	c.C1165A	p.Q389K	CTTCCCCAGAGTC	.	34	4	26	0	.	228	A	140984709	C	A	140984709	3	1	1	1	0	0	0	0	1	0	0	0	9232	595	21	3	1420	3	MAGEC3	23	140984709	Missense_Mutation	SNP	C	TCGA-3X-AAV9-01A-72D-A417-09	41058885	140984709	14285851	161	161											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	140994602	140994602	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaactcacagtacttttgAgggttttccccagtctcctc	8	13	8	12	0	2	2	1	1	1	1	5	3	3	2	3	1	2	2	3	1	2	5	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005462	exon4	c.A1412T	p.E471V	CTTTTGAGGGTTT	.	95	21	76	0	.	.	T	140994602	A	T	140994602	3	4	1	1	0	0	0	0	1	0	0	0	9230	304	11	5	1418	5	MAGEC1	23	140994602	Missense_Mutation	SNP	A	TCGA-3X-AAV9-01A-72D-A417-09	9893	140994602	14275958	162	162											
BGN	633	hgsc.bcm.edu;bcgsc.ca	37	chrX	152771327	152771327	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccctgcttcaggccctcGtcctggtgaacaacaagatc	9	8	8	16	1	1	2	1	1	0	1	4	2	2	2	4	2	3	1	4	2	3	1	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001711	exon4	c.G358T	p.V120F	GCCCTCGTCCTGG	.	53	4	35	0	.	.	T	152771327	G	T	152771327	3	4	1	1	0	0	0	0	1	0	0	0	1417	1145	40	2	368	2	BGN	23	152771327	Missense_Mutation	SNP	G	TCGA-3X-AAV9-01A-72D-A417-09	11776725	152771327	2499233	163	163											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu	37	chr1	16459707	16459707	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cgccctctaggcggatgatgTtgtggtggctgaactggccc	5	10	15	11	2	1	2	0	2	1	0	1	3	1	3	2	5	1	2	2	5	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004431	exon11	c.A2021T	p.N674I	ATGATGTTGTGGT	.	10	5	13	0	.	.	A	16459707	T	A	16459707	3	1	2	1	0	0	0	0	1	0	0	0	5195	1725	60	5	937	5	EPHA2	1	16459707	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09		16459707	232790914	1	164											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	33985237	33985237	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcccgaacattggtgttctCgtggccagcatagccattga	8	10	12	11	2	1	1	0	1	1	0	2	2	1	1	3	3	3	2	3	3	2	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CSMD2_ENST00000373381,axilla,malignant_melanoma,0,2	CSMD2_ENST00000373381	NM_052896	exon69	c.G10345T	p.E3449X	TGTTCTCGTGGCC	.	13	6	32	0	.	0	A	33985237	C	A	33985237	4	1	2	1	0	0	0	0	0	1	0	0	3970	893	31	2	122	2	CSMD2	1	33985237	Nonsense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	17525530	33985237	215265384	2	165											
KDM4A	9682	hgsc.bcm.edu	37	chr1	44133482	44133482	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaagatctccatggatGtgtttgtgagaaagttccag	10	13	13	5	0	1	3	0	2	1	2	3	5	2	4	2	2	0	2	2	2	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	KDM4A,NS,carcinoma,0,1	KDM4A	NM_014663	exon9	c.G955T	p.V319L	ATGGATGTGTTTG	.	44	2	53	0	.	0	T	44133482	G	T	44133482	3	4	2	1	0	0	0	0	1	0	0	0	8172	1377	48	3	985	3	KDM4A	1	44133482	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	10148245	44133482	205117139	3	166											
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	113242318	113242320	+	In_Frame_Del	DEL	AGA	AGA	-																															ccccactaggtgggttcagtAgaagaattccaaggccaaga																								novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_020963	exon18	c.2594_2596del	p.865_866del	TTCAGTAGAAGAA	.	35	10	43	0	.	.	-	113242320	AGA	-	113242318	7	5	2	1	0	1	0	1	0	0	0	0	9767	407	15	0	2661	0	MOV10	1	113242318	In_Frame_Del	DEL	AGA	TCGA-3X-AAVA-01A-11D-A417-09	69108836	113242318	136008303	4	167											
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117957335	117957335	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	ttttttcttcccaaatatagGaagttcacaaatgggtgcta	12	15	7	7	0	2	0	1	0	1	0	3	1	3	1	1	2	1	2	1	2	6	8	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_006699	exon4	c.G656C	p.G219A	ATATAGGAAGTTC	.	43	21	44	0	.	.	C	117957335	G	C	117957335	3	2	2	1	0	0	0	0	1	0	0	0	9261	1188	41	5	670	5	MAN1A2	1	117957335	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	4715017	117957335	131293286	5	168											
WDR3	10885	hgsc.bcm.edu	37	chr1	118495209	118495209	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtggagactatgttgtatCatcgtcccatgacaaatctc	11	12	8	10	1	2	2	1	1	1	1	5	3	3	2	1	1	0	2	1	1	3	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	WDR3,NS,carcinoma,0,1	WDR3	NM_006784	exon19	c.C2075A	p.S692X	TTGTATCATCGTC	.	44	2	61	0	.	0	A	118495209	C	A	118495209	4	1	2	1	0	0	0	0	0	1	0	0	17345	838	29	3	2145	3	WDR3	1	118495209	Nonsense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	537874	118495209	130755412	6	169											
RNPEP	6051	bcgsc.ca	37	chr1	201965299	201965299	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cgggtgtgggctgagccctgCctgattgatgctgccaagga	6	9	16	10	1	0	3	0	3	0	0	0	4	0	4	3	3	4	2	3	3	1	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	RNPEP	NM_020216	exon4	c.C762T	p.C254C	GCCCTGCCTGATT	.	110	5	107	0	.	39	T	201965299	T	T	201965299	2	4	2	1	0	0	0	0	0	0	0	1	13561	747	26	3		3	RNPEP	1	201965299	Silent	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	83470090	201965299	47285322	7	170											
DSTYK	25778	broad.mit.edu	37	chr1	205132932	205132932	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agacatcgttccagggttccGacgaagctttccctcaggta	9	10	10	12	3	1	1	1	0	0	1	5	3	4	1	3	2	1	4	3	2	2	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	DSTYK	NM_199462	exon4	c.C1476T	p.V492V	GGTTCCGACGAAG	.	38	3	36	0	.	87	A	205132932	G	A	205132932	2	1	2	1	0	0	0	0	0	0	0	1	4811	1045	37	1		1	DSTYK	1	205132932	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	3167633	205132932	44117689	8	171											
HIST3H2BB	128312	hgsc.bcm.edu	37	chr1	228645919	228645919	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaggacggcaagaagcGcaagcgcggccgcaaggaga	15	0	17	9	5	0	3	0	0	0	3	0	6	0	4	1	4	2	3	1	4	6	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_175055	exon1	c.G89A	p.R30H	AGAAGCGCAAGCG	.	90	3	77	0	.	.	A	228645919	G	A	228645919	3	1	2	1	0	0	0	0	1	0	0	0	7224	1087	38	1	91	1	HIST3H2BB	1	228645919	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	23512987	228645919	20604702	9	172											
TRIM67	440730	broad.mit.edu	37	chr1	231299471	231299473	+	In_Frame_Del	DEL	GCC	GCC	-																															gccaagcatcgcctggtgcaGccgccgccgccgccgccgcc																								novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	TRIM67	NM_001004342	exon1	c.756_758del	p.252_253del	GGTGCAGCCGCCG	.	6	2	4	0	.	160	-	231299473	GCC	-	231299471	7	5	2	1	0	1	0	1	0	0	0	0	16601	962	34	0	758	0	TRIM67	1	231299471	In_Frame_Del	DEL	GCC	TCGA-3X-AAVA-01A-11D-A417-09	2653552	231299471	17951150	10	173											
CAD	790	hgsc.bcm.edu;bcgsc.ca	37	chr2	27447924	27447924	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgtgttactgacttttggggGccagactgctctgaactgtg	6	14	13	8	0	1	3	0	2	1	1	1	3	1	3	1	2	3	2	1	2	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004341	exon11	c.G1433A	p.G478D	TTGGGGGCCAGAC	.	54	4	59	0	.	.	A	27447924	G	A	27447924	3	1	2	1	0	0	0	0	1	0	0	0	2583	1203	42	3	1475	3	CAD	2	27447924	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		27447924	215751449	11	174											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27457075	27457075	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	acaggtcacaggacccttcaAtctgcagctcattgccaagg	11	8	9	13	0	4	0	3	0	1	0	4	1	4	1	2	3	3	2	2	3	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004341	exon22	c.A3599G	p.N1200S	CCTTCAATCTGCA	.	16	7	23	0	.	.	G	27457075	A	G	27457075	3	3	2	1	0	0	0	0	1	0	0	0	2583	101	4	4	3685	4	CAD	2	27457075	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	9151	27457075	215742298	12	175											
VPS54	51542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	64189236	64189236	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctgctgtagaacctcttgTgttgttgctattaagtccaa	8	16	8	9	0	1	1	0	0	1	1	3	1	3	1	3	0	3	5	3	0	5	6	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_016516	exon7	c.A966G	p.T322T	CTCTTGTGTTGTT	.	66	27	93	0	.	.	C	64189236	T	C	64189236	2	2	2	1	0	0	0	0	0	0	0	1	17276	1683	59	4		4	VPS54	2	64189236	Silent	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	36732161	64189236	179010137	13	176											
MTHFD2	10797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74435800	74435800	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttggatcagtattccAtgttaccggctactccatgg	7	15	10	9	1	1	0	1	0	0	0	3	1	3	1	3	3	2	4	3	3	3	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_006636	exon4	c.A514T	p.M172L	TATTCCATGTTAC	.	53	19	76	0	.	.	T	74435800	A	T	74435800	3	4	2	1	0	0	0	0	1	0	0	0	9977	217	8	5	528	5	MTHFD2	2	74435800	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	10246564	74435800	168763573	14	177											
NCAPH	23397	bcgsc.ca	37	chr2	97020038	97020038	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtccctgggggatgactttGatgccaacgatgaacctgac	9	9	13	10	1	0	4	0	4	0	0	1	6	1	5	3	3	3	0	3	3	2	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	NCAPH	NM_015341	exon9	c.G1120T	p.D374Y	GACTTTGATGCCA	.	48	4	60	0	.	67	T	97020038	T	T	97020038	3	4	2	1	0	0	0	0	1	0	0	0	10256	1290	45	3	1154	3	NCAPH	2	97020038	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	22584238	97020038	146179335	15	178											
SLC25A12	8604	broad.mit.edu	37	chr2	172641829	172641829	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttggctgaaccacagcaacActaggagacttaaatttcgg	13	10	9	9	1	0	2	0	1	0	1	1	3	0	2	1	3	3	2	1	3	5	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SLC25A12	NM_003705	exon18	c.T1992A	p.S664R	AGCAACACTAGGA	.	52	3	67	0	.	59	T	172641829	A	T	172641829	3	4	2	1	0	0	0	0	1	0	0	0	14529	156	6	5	48	5	SLC25A12	2	172641829	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	75621791	172641829	70557544	16	179											
WIPF1	7456	ucsc.edu	37	chr2	175431867	175431867	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tacatatggctctggaggtgGcaaatcggaaatcggatgga	12	9	14	6	2	1	0	0	0	1	0	3	4	1	4	0	7	1	2	0	7	4	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	WIPF1	NM_003387	exon7	c.C1387T	p.P463S	GAGGTGGCAAATC	.	42	4	83	1	.	88	A	175431867	G	A	175431867	3	1	2	1	0	0	0	0	1	0	0	0	17427	1203	42	3	132	3	WIPF1	2	175431867	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	2790038	175431867	67767506	17	180											
PRKRA	8575	hgsc.bcm.edu	37	chr2	179306336	179306336	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atagctgtcaacattactcaCtaaagaaatgtggttctctg	13	13	7	8	0	3	1	2	0	1	1	4	1	3	1	0	1	3	2	0	1	6	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	PRKRA,NS,carcinoma,0,1	PRKRA	NM_001139518	exon7	c.534+1G>A	.	TACTCACTAAAGA	.	41	3	35	0	.	0	T	179306336	C	T	179306336	5	4	2	1	0	0	0	0	0	0	1	0	12576	579	20	3	343	3	PRKRA	2	179306336	Splice_Site	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	3874469	179306336	63893037	18	181											
PXK	54899	bcgsc.ca	37	chr3	58395275	58395275	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagattcaccagcatcgaaGactgacaagagctcagtccc	15	6	8	12	1	2	4	2	1	0	3	4	5	3	4	2	0	2	2	2	0	3	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	PXK	NM_017771	exon15	c.G1325T	p.R442I	ATCGAAGACTGAC	.	23	3	34	0	.	89	T	58395275	T	T	58395275	3	4	2	1	0	0	0	0	1	0	0	0	12901	942	33	3	1383	3	PXK	3	58395275	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		58395275	139627155	19	182											
GPR160	26996	hgsc.bcm.edu	37	chr3	169802126	169802126	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtatagattattgcctGaatttctctaaaacaaccaa	14	14	5	8	0	1	2	0	1	1	1	2	2	1	2	2	0	3	2	2	0	8	7	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR160,NS,carcinoma,+1,1	GPR160	NM_014373	exon4	c.G366T	p.L122L	TTGCCTGAATTTC	.	31	2	31	0	.	+1	T	169802126	G	T	169802126	2	4	2	1	0	0	0	0	0	0	0	1	6704	1277	45	3		3	GPR160	3	169802126	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	111406851	169802126	28220304	20	183											
SPON2	10417	bcgsc.ca	37	chr4	1161434	1161434	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagacctcgcagtccagcggCgtttctggaactggaccaag	9	7	13	12	3	1	1	0	0	1	1	3	4	2	3	3	3	2	2	3	3	2	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SPON2	NM_001199021	exon8	c.G822A	p.T274T	CAGCGGCGTTTCT	.	83	5	85	0	.	22	T	1161434	T	T	1161434	2	4	2	1	0	0	0	0	0	0	0	1	15139	755	27	1		1	SPON2	4	1161434	Silent	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09		1161434	189992842	21	184											
ANAPC4	29945	bcgsc.ca	37	chr4	25419867	25419867	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cttcagatgaagaggaggagGccagtaataagcctgtaaaa	16	7	12	6	0	1	3	1	1	0	2	1	5	1	5	2	3	1	2	2	3	5	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	ANAPC4	NM_013367	exon29	c.G2290A	p.A764T	GAGGAGGCCAGTA	.	51	4	77	0	.	61	A	25419867	A	A	25419867	3	1	2	1	0	0	0	0	1	0	0	0	600	1203	42	3	2400	3	ANAPC4	4	25419867	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	24258433	25419867	165734409	22	185											
N4BP2	55728	bcgsc.ca	37	chr4	40154490	40154490	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agttgctcgcatcaaaccagCtgtcattaagtacctcataa	13	11	6	11	1	3	0	3	0	0	0	4	0	3	0	2	0	4	5	2	0	4	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	N4BP2	NM_018177	exon17	c.C5234T	p.A1745V	AACCAGCTGTCAT	.	69	4	76	0	.	166	T	40154490	T	T	40154490	3	4	2	1	0	0	0	0	1	0	0	0	10158	797	28	3	5292	3	N4BP2	4	40154490	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	14734623	40154490	150999786	23	186											
MUC7	4589	hgsc.bcm.edu;broad.mit.edu	37	chr4	71347033	71347033	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tccaccagagaccacagctgCcccacccacaccttctgcaa	11	5	5	20	0	1	1	0	0	1	1	2	2	2	1	7	0	3	2	7	0	1	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MUC7,NS,carcinoma,0,2	MUC7	NM_001145007	exon4	c.C572A	p.A191D	CAGCTGCCCCACC	.	50	4	63	0	.	0	A	71347033	C	A	71347033	3	1	2	1	0	0	0	0	1	0	0	0	10029	739	26	3	578	3	MUC7	4	71347033	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	31192543	71347033	119807243	24	187											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89018752	89018752	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaaggcatctgcctttggCttcaatccttagtcagaaag	12	11	9	9	0	3	2	2	0	1	2	4	2	4	2	2	2	1	2	2	2	5	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004827	exon13	c.G1500T	p.K500N	CTTTGGCTTCAAT	.	27	13	28	0	.	.	A	89018752	C	A	89018752	3	1	2	1	0	0	0	0	1	0	0	0	69	796	28	3	483	3	ABCG2	4	89018752	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	17671719	89018752	102135524	25	188											
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	109086281	109086281	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggtgttctctggccttgtcGtggtagggctcctgagaggt	3	13	17	8	1	1	1	0	1	1	1	4	2	2	1	2	5	0	3	2	5	1	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001130714	exon2	c.C252T	p.H84H	CTTGTCGTGGTAG	.	84	30	112	0	.	.	A	109086281	G	A	109086281	2	1	2	1	0	0	0	0	0	0	0	1	8753	1136	40	1		1	LEF1	4	109086281	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	20067529	109086281	82067995	26	189											
CCDC109B	55013	hgsc.bcm.edu	37	chr4	110605624	110605624	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agctggaatagaagctcattCggaagccaaaaccagtggac	15	6	11	9	1	1	1	1	0	0	1	2	4	1	4	2	3	4	2	2	3	6	2	rs149233225	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CCDC109B_ENST00000394650,NS,carcinoma,0,2	CCDC109B_ENST00000394650	NM_017918	exon6	c.C638T	p.S213L	CTCATTCGGAAGC	.	28	2	28	0	0.000	0	T	110605624	C	T	110605624	3	4	2	1	0	0	0	0	1	0	0	0	2763	893	31	1	660	1	CCDC109B	4	110605624	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	1519343	110605624	80548652	27	190											
SLC7A11	23657	ucsc.edu;bcgsc.ca	37	chr4	139153507	139153507	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagaatgtagcgtccaaatGccagggatatcacagcagta	14	7	10	10	1	1	1	1	0	0	1	2	2	2	2	3	1	3	3	3	1	5	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SLC7A11	NM_014331	exon3	c.C434A	p.A145E	CCAAATGCCAGGG	.	42	4	54	0	.	40	T	139153507	G	T	139153507	3	4	2	1	0	0	0	0	1	0	0	0	14749	1319	46	3	1111	3	SLC7A11	4	139153507	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	28547883	139153507	52000769	28	191											
HCN1	348980	hgsc.bcm.edu	37	chr5	45262723	45262723	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gagattgtgtcctcatgcggGaggtcggggtcgtagtagac	7	10	17	7	3	1	2	1	0	0	2	4	4	2	3	1	4	1	2	1	4	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	HCN1,NS,malignant_melanoma,0,1	HCN1	NM_021072	exon8	c.C1973A	p.S658Y	ATGCGGGAGGTCG	.	53	3	61	0	.	0	T	45262723	G	T	45262723	3	4	2	1	0	0	0	0	1	0	0	0	7037	1174	41	3	703	3	HCN1	5	45262723	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		45262723	135652537	29	192											
OCLN	0	broad.mit.edu	37	chr5	68787616	68787617	+	RNA	DEL	AA	AA	-																															aggtgctttttcgttttcttAaaaaaaaaaaaaaagtaaac																								rs34768268	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	OCLN	.	.	.	.	TTTCTTAAAAAAA	.	10	5	4	0	AA|0.500;-|0.500	22	-	68787617	AA	-	68787616	6	5	2	0	1	1	0	1	0	0	0	0	10868	377	13	0		0	OCLN	5	68787616	RNA	DEL	AA	TCGA-3X-AAVA-01A-11D-A417-09	23524893	68787616	112127644	30	193											
GPR98	84059	hgsc.bcm.edu	37	chr5	89923034	89923034	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tattcctttaacaggtaccaGaaaatgatgaaatattttta	16	15	5	5	0	0	3	0	2	0	1	1	3	1	3	2	1	2	1	2	1	8	9	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR98,colon,carcinoma,0,1	GPR98	NM_032119	exon7	c.G679A	p.E227K	GTACCAGAAAATG	.	40	2	30	0	.	0	A	89923034	G	A	89923034	3	1	2	1	0	0	0	0	1	0	0	0	6762	943	33	3	705	3	GPR98	5	89923034	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	21135418	89923034	90992226	31	194											
AQPEP	0	hgsc.bcm.edu	37	chr5	115351066	115351066	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaacaaagaagaaaagatTcaacttgcttatgcaatgag	20	8	7	6	0	1	4	1	1	0	3	1	4	1	4	0	0	4	2	0	0	8	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	FLJ90650,caecum,carcinoma,0,1	FLJ90650	NM_173800	exon17	c.T2568A	p.I856I	AAAGATTCAACTT	.	35	2	31	0	.	0	A	115351066	T	A	115351066	2	1	2	1	0	0	0	0	0	0	0	1	831	1771	62	5		5	AQPEP	5	115351066	Silent	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	25428032	115351066	65564194	32	195											
PCDHA6	56142	hgsc.bcm.edu	37	chr5	140209783	140209783	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaacgtgtacctgatcatcGccatctgcgcggtatccagc	8	10	9	14	4	3	1	2	1	1	0	5	1	4	1	3	1	4	2	3	1	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	PCDHA6_ENST00000529310,NS,carcinoma,0,2	PCDHA6_ENST00000529310	NM_018909	exon1	c.G2107A	p.A703T	ATCATCGCCATCT	.	45	2	52	0	.	0	A	140209783	G	A	140209783	3	1	2	1	0	0	0	0	1	0	0	0	11575	1087	38	1	2109	1	PCDHA6	5	140209783	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	24858717	140209783	40705477	33	196											
DPYSL3	1809	hgsc.bcm.edu	37	chr5	146795287	146795287	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctttgtccttgatgaGgttctgcacttcctgcttga	5	16	8	12	0	2	3	1	3	1	0	4	3	4	3	3	1	2	3	3	1	0	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	DPYSL3,NS,carcinoma,0,1	DPYSL3	NM_001197294	exon4	c.C805A	p.L269I	TGATGAGGTTCTG	.	40	2	57	0	.	0	T	146795287	G	T	146795287	3	4	2	1	0	0	0	0	1	0	0	0	4774	1000	35	3	1293	3	DPYSL3	5	146795287	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	6585504	146795287	34119973	34	197											
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149500517	149500518	+	Missense_Mutation	DNP	GA	GA	TT																															aggccaaagtcacagatcttGaccagcttgccttcacagat																								novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_002609	exon18	c.T2519A	p.V840E	ATCTTGACCAGCT	.	27	9	28	0	.	.	TT	149500518	GA	TT	149500517	3	4	2	1	0	0	0	0	1	0	0	0	11709	1277	45	3	824	3	PDGFRB	5	149500517	Missense_Mutation	DNP	GA	TCGA-3X-AAVA-01A-11D-A417-09	2705230	149500517	31414743	35	198											
HIST1H2AI	8329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27776314	27776314	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcgcacagggtggcgtcctGcccaacatccaggccgtgct	7	7	12	15	3	0	0	0	0	0	0	3	0	2	0	4	3	3	2	4	3	1	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_003509	exon1	c.G327A	p.L109L	CGTCCTGCCCAAC	.	63	18	65	0	.	.	A	27776314	G	A	27776314	2	1	2	1	0	0	0	0	0	0	0	1	7176	1306	46	3		3	HIST1H2AI	6	27776314	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		27776314	143338753	36	199											
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26224462	26224462	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	taacaagccaagacctactgTatgaccttgacataaatata	17	10	5	9	0	0	3	0	2	0	1	0	3	0	3	3	0	3	1	3	0	9	7	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004289	exon4	c.T1144C	p.Y382H	CTACTGTATGACC	.	60	18	73	0	.	.	C	26224462	T	C	26224462	3	2	2	1	0	0	0	0	1	0	0	0	10416	1638	57	4	1158	4	NFE2L3	7	26224462	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09		26224462	132914201	37	200											
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	143175419	143175419	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctgctgtttttttgggtgAactaccctgtatatcaagaa	9	15	8	9	0	1	2	1	1	0	1	1	2	1	2	2	1	3	3	2	1	6	6	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_176883	exon1	c.A454G	p.N152D	TGGGTGAACTACC	.	29	4	30	0	.	.	G	143175419	A	G	143175419	3	3	2	1	0	0	0	0	1	0	0	0	15636	246	9	4	456	4	TAS2R41	7	143175419	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	116950957	143175419	15963244	38	201											
CSMD1	64478	hgsc.bcm.edu	37	chr8	3063118	3063118	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ataaaactaccccttctgatCccgtgtactggcctccacag	10	10	6	15	1	1	1	0	1	1	0	3	1	3	1	5	1	3	1	5	1	4	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1_ENST00000537824	NM_033225	exon31	c.G4892A	p.G1631E	TCTGATCCCGTGT	.	46	2	38	0	.	0	T	3063118	C	T	3063118	3	4	2	1	0	0	0	0	1	0	0	0	3969	855	30	3	5962	3	CSMD1	8	3063118	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09		3063118	143300904	39	202											
AP3M2	10947	hgsc.bcm.edu	37	chr8	42015516	42015516	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaatgtagttgtggtttatGaggtattggaagagatgctt	11	15	13	2	0	0	2	0	1	0	1	0	4	0	3	0	3	1	5	0	3	5	7	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	AP3M2,NS,carcinoma,0,1	AP3M2	NM_001134296	exon4	c.G331T	p.E111X	GTTTATGAGGTAT	.	40	2	46	0	.	0	T	42015516	G	T	42015516	4	4	2	1	0	0	0	0	0	1	0	0	744	1291	45	3	337	3	AP3M2	8	42015516	Nonsense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	38952398	42015516	104348506	40	203											
EEF1D	1936	broad.mit.edu;bcgsc.ca	37	chr8	144672086	144672086	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctcatcagcgtcctcagggtCgtcctggccgggcccattca	5	9	11	16	3	4	0	4	0	0	0	7	0	6	0	4	3	1	0	4	3	0	1	rs370379043		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	EEF1D	NM_001130053	exon3	c.G166A	p.D56N	CAGGGTCGTCCTG	.	8	3	24	0	.	48	T	144672086	C	T	144672086	3	4	2	1	0	0	0	0	1	0	0	0	4952	884	31	1	1809	1	EEF1D	8	144672086	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	102656570	144672086	1691936	41	204											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	35546734	35546734	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctattcagcagcctgcactcTactccaggaggaactgcacg	10	8	9	14	1	2	0	1	0	1	0	3	2	3	2	2	2	6	3	2	2	3	3	rs200234823	alternate_allele	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_014806	exon2	c.T216A	p.S72S	GCACTCTACTCCA	.	16	8	12	0	.	.	A	35546734	T	A	35546734	2	1	2	1	0	0	0	0	0	0	0	1	13803	1509	53	5		5	RUSC2	9	35546734	Silent	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09		35546734	105666697	42	205											
VPS13A	23230	hgsc.bcm.edu	37	chr9	79936212	79936212	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacattacattatccaaatGtggtcttgtaatgttaaaca	16	14	5	6	0	1	0	0	0	1	0	2	0	2	0	1	1	3	2	1	1	7	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	VPS13A_ENST00000376634,NS,lymphoid_neoplasm,0,3	VPS13A_ENST00000376634	NM_001018038	exon43	c.G5543T	p.C1848F	CCAAATGTGGTCT	.	59	2	61	0	.	0	T	79936212	G	T	79936212	3	4	2	1	0	0	0	0	1	0	0	0	17249	1377	48	3	5713	3	VPS13A	9	79936212	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	44389478	79936212	61277219	43	206											
IPPK	64768	broad.mit.edu	37	chr9	95396672	95396672	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggatgggtctgcccaccttcGttagcgcgaaggccactgtc	6	9	13	13	3	1	0	0	0	1	0	3	2	1	1	3	3	2	1	3	3	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	IPPK	NM_022755	exon11	c.C1166T	p.T389M	ACCTTCGTTAGCG	.	40	3	56	0	.	34	A	95396672	G	A	95396672	3	1	2	1	0	0	0	0	1	0	0	0	7845	1145	40	1	321	1	IPPK	9	95396672	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	15460460	95396672	45816759	44	207											
AKR1C4	1109	hgsc.bcm.edu	37	chr10	5242162	5242162	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggttccgaggaacagagctGtagaggtcaccaaattagca	14	7	12	8	1	1	2	1	0	0	2	2	4	2	3	2	3	3	4	2	3	4	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001818	exon2	c.G103T	p.V35L	AGAGCTGTAGAGG	.	65	4	72	0	.	.	T	5242162	G	T	5242162	3	4	2	1	0	0	0	0	1	0	0	0	469	1377	48	3	109	3	AKR1C4	10	5242162	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		5242162	130292585	45	208											
VPS26A	9559	hgsc.bcm.edu	37	chr10	70892799	70892799	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgacggagaatccgtttcagGaaaggtaaatcttctgtttg	11	13	11	6	2	3	2	1	1	2	1	4	4	4	3	1	3	0	3	1	3	4	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004896	exon2	c.G149T	p.G50V	TTTCAGGAAAGGT	.	55	4	53	0	.	.	T	70892799	G	T	70892799	3	4	2	1	0	0	0	0	1	0	0	0	17257	1174	41	3	155	3	VPS26A	10	70892799	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	65650637	70892799	64641948	46	209											
TSPAN14	81619	ucsc.edu;bcgsc.ca	37	chr10	82280581	82280581	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggccttcttcagcctctgtAgcaccagacactgcacctcc	7	10	7	17	0	3	1	1	0	2	1	4	1	4	1	5	1	3	3	5	1	1	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	TSPAN14	.	.	.	.	CTCTGTAGCACCA	.	19	6	29	0	.	29	C	82280581	A	C	82280581	3	2	2	1	0	0	0	0	1	0	0	0	16699	435	15	4		4	TSPAN14	10	82280581	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	11387782	82280581	53254166	47	210											
LIPF	8513	hgsc.bcm.edu	37	chr10	90429680	90429680	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaagcagctacactatgttgGccattcccagggcaccacca	11	7	9	14	0	0	0	0	0	0	0	1	1	1	0	4	2	3	4	4	2	3	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001198829	exon6	c.G539T	p.G180V	ATGTTGGCCATTC	.	54	3	71	0	.	.	T	90429680	G	T	90429680	3	4	2	1	0	0	0	0	1	0	0	0	8863	1203	42	3	523	3	LIPF	10	90429680	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	8149099	90429680	45105067	48	211											
NFKB2	4791	hgsc.bcm.edu	37	chr10	104157131	104157131	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atgatacaaaaacttcagagGcagcggctccgctctaggcc	12	7	10	12	2	2	2	1	1	1	1	3	2	3	2	2	3	3	3	2	3	4	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001077494	exon7	c.G468T	p.R156S	TCAGAGGCAGCGG	.	60	4	60	0	.	.	T	104157131	G	T	104157131	3	4	2	1	0	0	0	0	1	0	0	0	10423	1194	42	3	490	3	NFKB2	10	104157131	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	13727451	104157131	31377616	49	212											
GRK5	2869	ucsc.edu	37	chr10	121184542	121184542	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaggggagaaccattccacGaatatctggacagcatgttt	12	10	11	8	1	1	2	0	1	1	1	2	5	2	3	2	3	2	2	2	3	3	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	GRK5	NM_005308	exon6	c.G478T	p.E160X	TTCCACGAATATC	.	38	4	68	0	.	58	T	121184542	G	T	121184542	4	4	2	1	0	0	0	0	0	1	0	0	6833	1059	37	2	500	2	GRK5	10	121184542	Nonsense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	17027411	121184542	14350205	50	213											
GPR123	84435	hgsc.bcm.edu	37	chr10	134912152	134912152	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cccgtcccacagcgccatccGcatcagccgcaagggccggc	7	3	11	20	5	1	0	1	0	0	0	3	0	3	0	6	2	2	2	6	2	1	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR123_ENST00000368577,NS,carcinoma,0,2	GPR123_ENST00000368577	NM_001083909	exon4	c.G140A	p.R47H	CCATCCGCATCAG	.	37	2	47	0	.	0	A	134912152	G	A	134912152	3	1	2	1	0	0	0	0	1	0	0	0	6677	1087	38	1	150	1	GPR123	10	134912152	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	13727610	134912152	622595	51	214											
KRTAP5-5	439915	ucsc.edu	37	chr11	1651645	1651645	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtccagctgctgtaagccctActgctgccagtccagctgct	6	10	10	15	0	0	0	0	0	0	0	2	0	2	0	4	0	8	6	4	0	2	2	rs77039648	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KRTAP5-5	NM_001001480	exon1	c.A575G	p.Y192C	AGCCCTACTGCTG	.	40	8	38	8	A|0.999;G|0.001	86	G	1651645	A	G	1651645	3	3	2	1	0	0	0	0	1	0	0	0	8603	391	14	4	577	4	KRTAP5-5	11	1651645	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09		1651645	133354871	52	215											
MICAL2	9645	hgsc.bcm.edu;bcgsc.ca	37	chr11	12244189	12244189	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctctaccggctgttacctCagacaaccccggagaacatc	10	8	8	15	2	2	2	1	0	1	2	4	3	2	2	4	2	4	2	4	2	4	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MICAL2_ENST00000379612,NS,carcinoma,0,2	MICAL2_ENST00000379612	NM_014632	exon11	c.C1348A	p.Q450K	TTACCTCAGACAA	.	62	4	64	0	.	0	A	12244189	C	A	12244189	3	1	2	1	0	0	0	0	1	0	0	0	9618	827	29	3	1382	3	MICAL2	11	12244189	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	10592544	12244189	122762327	53	216											
ARFGAP2	84364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47196607	47196607	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	atcagagtccttcttctctgGggagtgattaggaacggcac	9	11	12	9	1	3	2	1	1	2	1	5	4	4	4	1	4	1	1	1	4	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_032389	exon5	c.C439A	p.P147T	TCTCTGGGGAGTG	.	49	17	59	0	.	.	T	47196607	G	T	47196607	3	4	2	1	0	0	0	0	1	0	0	0	847	1232	43	3	1174	3	ARFGAP2	11	47196607	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	34952418	47196607	87809909	54	217											
AGBL2	79841	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	47701557	47701557	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggatcacaaaagtccagaaGggtgtcacagacatgataac	17	6	10	8	0	2	3	2	1	0	2	3	4	3	4	1	2	1	0	1	2	4	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_024783	exon13	c.C1984A	p.L662I	CCAGAAGGGTGTC	.	42	4	54	0	.	.	T	47701557	G	T	47701557	3	4	2	1	0	0	0	0	1	0	0	0	373	1000	35	3	752	3	AGBL2	11	47701557	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	504950	47701557	87304959	55	218											
ZDHHC24	254359	hgsc.bcm.edu	37	chr11	66311234	66311234	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ccatgtggaggggcgtgtggGctcgcagcagggccgacagt	6	6	19	10	3	0	0	0	0	0	0	1	2	0	1	2	5	1	3	2	5	0	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ZDHHC24,colon,carcinoma,0,1	ZDHHC24	NM_207340	exon2	c.C500A	p.A167D	GTGTGGGCTCGCA	.	36	2	39	0	.	0	T	66311234	G	T	66311234	3	4	2	1	0	0	0	0	1	0	0	0	17673	1203	42	3	362	3	ZDHHC24	11	66311234	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	18609677	66311234	68695282	56	219											
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751604	76751604	+	Splice_Site	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctggcccttcggcgtgcagcTtgcctggcgcacagcagtcc	4	8	13	16	3	0	0	0	0	0	0	2	0	1	0	3	3	4	4	3	3	0	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.,6	.	NM_138706	exon4	c.1006+1T>C	.	TGCAGCTTGCCTG	.	16	3	16	1	.	27	C	76751604	T	C	76751604	5	2	2	1	0	0	0	0	0	0	1	0	1259	1606	56	4	1011	4	B3GNT6	11	76751604	Splice_Site	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	10440370	76751604	58254912	57	220											
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu	37	chr11	124763789	124763789	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caccctagctcggcgccggcGgtggatacacacggcggtgc	6	5	15	15	6	0	0	0	0	0	0	1	1	0	1	2	6	3	1	2	6	2	2	rs374471211		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ROBO4,NS,carcinoma,+1,1	ROBO4	NM_019055	exon9	c.C1471T	p.R491C	GCCGGCGGTGGAT	.	10	3	8	0	.	+1	A	124763789	G	A	124763789	3	1	2	1	0	0	0	0	1	0	0	0	13568	1116	39	1	1592	1	ROBO4	11	124763789	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	48012185	124763789	10242727	58	221											
LRRC23	10233	hgsc.bcm.edu	37	chr12	7022136	7022136	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagcctgagccccagcGtgacctggaacccgaacagt	10	4	13	14	2	0	2	0	2	0	0	0	5	0	4	5	2	5	1	5	2	2	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001135217	exon7	c.G1001T	p.R334L	CCCAGCGTGACCT	.	53	3	60	0	.	.	T	7022136	G	T	7022136	3	4	2	1	0	0	0	0	1	0	0	0	9023	1145	40	2	1023	2	LRRC23	12	7022136	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		7022136	126829759	59	222											
RPAP3	79657	hgsc.bcm.edu	37	chr12	48062853	48062853	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcattttctcgctgtaagacTgacatacatcctgcttcaaa	11	13	6	11	1	2	2	1	1	1	1	4	2	3	2	1	0	2	4	1	0	3	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	RPAP3,rectum,carcinoma,0,1	RPAP3	NM_024604	exon14	c.A1559G	p.Q520R	TAAGACTGACATA	.	48	2	68	0	.	0	C	48062853	T	C	48062853	3	2	2	1	0	0	0	0	1	0	0	0	13595	1580	55	4	454	4	RPAP3	12	48062853	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	41040717	48062853	85789042	60	223											
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53189250	53189250	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgctcctgggcctttacttGcccaatctgggggtcgatct	4	12	11	14	2	2	0	0	0	2	0	4	1	3	0	4	3	2	1	4	3	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_057088	exon1	c.C577A	p.Q193K	TTACTTGCCCAAT	.	65	23	117	0	.	.	T	53189250	G	T	53189250	3	4	2	1	0	0	0	0	1	0	0	0	8509	1328	46	3	1345	3	KRT3	12	53189250	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	5126397	53189250	80662645	61	224											
SP7	121340	ucsc.edu;bcgsc.ca	37	chr12	53722690	53722690	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacctgtgggcagtgtccctTgcagcccatcaccctggccc	5	8	11	17	0	1	0	1	0	0	0	2	1	2	0	5	2	2	2	5	2	0	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SP7	NM_152860	exon2	c.A536G	p.Q179R	GTCCCTTGCAGCC	.	28	4	26	0	.	30	C	53722690	T	C	53722690	3	2	2	1	0	0	0	0	1	0	0	0	15023	1812	63	4	763	4	SP7	12	53722690	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	533440	53722690	80129205	62	225											
KIAA0586	9786	ucsc.edu;bcgsc.ca	37	chr14	58955379	58955379	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgaagaaccagagagtatgGatttccctgctcagcctcca	12	9	9	11	0	1	3	1	1	0	2	3	5	3	4	4	1	3	2	4	1	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KIAA0586	NM_001244189	exon26	c.G3727T	p.D1243Y	AGTATGGATTTCC	.	40	4	50	0	.	180	T	58955379	G	T	58955379	3	4	2	1	0	0	0	0	1	0	0	0	8228	1174	41	3	3430	3	KIAA0586	14	58955379	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		58955379	48394161	63	226											
CYFIP1	23191	bcgsc.ca	37	chr15	22925822	22925822	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggaggacgcgctgtccaacGtggacctcctggaggagctg	7	7	16	11	3	0	0	0	0	0	0	2	5	2	5	3	5	2	2	3	5	1	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	CYFIP1	NM_014608	exon2	c.G40T	p.V14L	TCCAACGTGGACC	.	20	3	28	0	.	159	T	22925822	T	T	22925822	3	4	2	1	0	0	0	0	1	0	0	0	4160	1145	40	2	42	2	CYFIP1	15	22925822	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		22925822	79605570	64	227											
CYFIP1	23191	broad.mit.edu	37	chr15	23000152	23000152	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tatgatcatcgtacttcttgGgcagcagcggcgttttgctg	6	14	12	9	3	2	1	1	1	1	0	3	1	2	1	0	2	4	5	0	2	2	6	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	CYFIP1	NM_014608	exon30	c.G3506T	p.G1169V	TTCTTGGGCAGCA	.	58	3	63	0	.	159	T	23000152	G	T	23000152	3	4	2	1	0	0	0	0	1	0	0	0	4160	1232	43	3	4001	3	CYFIP1	15	23000152	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	74330	23000152	79531240	65	228											
RYR3	6263	broad.mit.edu	37	chr15	34018689	34018689	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcatcagcatccccttgaaaCtgccctccctcaacaaaggt	11	9	5	16	0	3	1	3	1	0	0	5	1	5	1	4	1	4	1	4	1	3	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	RYR3	NM_001243996	exon46	c.C7015T	p.L2339L	TTGAAACTGCCCT	.	21	3	39	0	.	760	T	34018689	C	T	34018689	2	4	2	1	0	0	0	0	0	0	0	1	13822	564	20	3		3	RYR3	15	34018689	Silent	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	11018537	34018689	68512703	66	229											
C15orf54	400360	ucsc.edu;bcgsc.ca	37	chr15	39544794	39544794	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgctcaggctcatgctgCtgacaggggagagaggggac	8	6	17	10	1	2	2	2	1	0	1	2	5	2	4	1	5	3	4	1	5	0	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	C15orf54	NM_207445	exon2	c.C458T	p.A153V	ATGCTGCTGACAG	.	36	4	42	0	.	18	T	39544794	C	T	39544794	3	4	2	1	0	0	0	0	1	0	0	0	1808	797	28	3	460	3	C15orf54	15	39544794	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	5526105	39544794	62986598	67	230											
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	48063949	48063949	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctttgttcctcaaaccccAtctgtcagaccactgaacaa	11	11	4	15	0	3	2	2	1	1	1	5	2	5	2	5	0	2	1	5	0	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_153618	exon19	c.A3189G	p.P1063P	AACCCCATCTGTC	.	18	8	32	0	.	.	G	48063949	A	G	48063949	2	3	2	1	0	0	0	0	0	0	0	1	14096	204	8	4		4	SEMA6D	15	48063949	Silent	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	8519155	48063949	54467443	68	231											
MTFMT	123263	hgsc.bcm.edu	37	chr15	65295439	65295439	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atagcaacagtttttttctgCttcttctttgttggaagtct	7	20	7	7	0	4	0	0	0	4	0	4	1	4	1	0	1	3	4	0	1	3	8	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MTFMT_ENST00000220058,NS,carcinoma,0,2	MTFMT_ENST00000220058	NM_139242	exon9	c.G1131T	p.K377N	TTTCTGCTTCTTC	.	44	3	48	0	.	0	A	65295439	C	A	65295439	3	1	2	1	0	0	0	0	1	0	0	0	9972	796	28	3	42	3	MTFMT	15	65295439	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	17231490	65295439	37235953	69	232											
WDR93	56964	hgsc.bcm.edu;ucsc.edu	37	chr15	90281353	90281353	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttaattttgaggcctgccCactcctggaaaatatctcaa	11	14	6	10	0	1	1	1	1	1	0	3	2	2	2	3	2	1	0	3	2	5	5	rs373980931	alternate_allele	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_020212	exon16	c.C1847G	p.P616R	CCTGCCCACTCCT	.	28	4	19	0	.	.	G	90281353	C	G	90281353	3	3	2	1	0	0	0	0	1	0	0	0	17400	594	21	5	1905	5	WDR93	15	90281353	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	24985914	90281353	12250039	70	233											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90631837	90631837	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	acctggtcgccatgggcgtgCctgccaatggtgatgggctt	5	10	15	11	2	0	1	0	1	0	0	1	1	0	1	4	4	2	1	4	4	1	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	IDH2,NS,haematopoietic_neoplasm,-1,19	IDH2	NM_002168	exon4	c.G516T	p.R172S	GGCGTGCCTGCCA	.	37	13	38	0	.	-1	A	90631837	C	A	90631837	3	1	2	1	0	0	0	0	1	0	0	0	7539	738	26	3	874	3	IDH2	15	90631837	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	350484	90631837	11899555	71	234											
KREMEN2	79412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	3016345	3016345	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaggctacctgggatgCtttgtggactcaggggcacc	6	9	15	11	0	1	0	1	0	0	0	1	2	1	2	3	5	3	3	3	5	1	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001253725	exon4	c.C381A	p.C127X	GGGATGCTTTGTG	.	36	11	49	0	.	.	A	3016345	C	A	3016345	4	1	2	1	0	0	0	0	0	1	0	0	8486	805	28	3	395	3	KREMEN2	16	3016345	Nonsense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09		3016345	87338408	72	235											
DNAJA3	9093	broad.mit.edu	37	chr16	4497003	4497003	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcccagggcctgtacgagacGatcaacgtgacggtaagagg	11	5	15	10	4	1	3	1	1	0	2	1	5	1	3	2	3	2	2	2	3	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	DNAJA3	NM_001135110	exon8	c.G1113T	p.T371T	CGAGACGATCAAC	.	22	3	31	0	.	52	T	4497003	G	T	4497003	2	4	2	1	0	0	0	0	0	0	0	1	4640	1045	37	2		2	DNAJA3	16	4497003	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	1480658	4497003	85857750	73	236											
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20442583	20442583	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgcctcctggagaagaGgggaatgttgccgtccgtat	7	10	14	10	2	0	2	0	0	0	2	3	4	3	3	5	3	2	2	5	3	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_017888	exon10	c.G1248C	p.E416D	AGAAGAGGGGAAT	.	30	4	43	0	.	.	C	20442583	G	C	20442583	3	2	2	1	0	0	0	0	1	0	0	0	187	991	35	5	1282	5	ACSM5	16	20442583	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	15945580	20442583	69912170	74	237											
MAZ	4150	hgsc.bcm.edu	37	chr16	29821450	29821450	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggcagcggcggcagcggcAgcagcggcagcagtagcagc	8	1	19	13	5	0	0	0	0	0	0	0	0	0	0	0	5	7	8	0	5	1	1	rs372438870		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_002383	exon5	c.A1332G	p.A444A	AGCGGCAGCAGCG	.	24	6	20	0	.	.	G	29821450	A	G	29821450	2	3	2	1	0	0	0	0	0	0	0	1	9390	175	7	4		4	MAZ	16	29821450	Silent	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	9378867	29821450	60533303	75	238											
ITGAX	3687	hgsc.bcm.edu	37	chr16	31372509	31372509	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagatattcaaaaccaactGaaggagaagatctttgccat	18	9	7	7	0	2	4	1	1	1	3	2	5	2	4	2	1	3	0	2	1	7	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ITGAX,NS,carcinoma,0,1	ITGAX	NM_000887	exon9	c.G987T	p.L329L	CCAACTGAAGGAG	.	48	2	71	0	.	0	T	31372509	G	T	31372509	2	4	2	1	0	0	0	0	0	0	0	1	7933	1277	45	3		3	ITGAX	16	31372509	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	1551059	31372509	58982244	76	239											
RSPRY1	89970	hgsc.bcm.edu;bcgsc.ca	37	chr16	57247850	57247850	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaatactggaatacttgctaCagtgtctggtaagtgagaca	13	11	11	6	0	1	1	0	1	1	1	1	4	1	2	0	2	4	2	0	2	6	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_133368	exon6	c.C694A	p.Q232K	TTGCTACAGTGTC	.	86	4	98	0	.	.	A	57247850	C	A	57247850	3	1	2	1	0	0	0	0	1	0	0	0	13765	479	17	3	712	3	RSPRY1	16	57247850	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	25875341	57247850	33106903	77	240											
ZNF821	55565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71894451	71894451	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcacagttgttgcacaCaagcagaattccagcagggt	12	7	12	10	0	0	1	0	0	0	1	1	1	1	1	1	2	4	7	1	2	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001201553	exon7	c.G709A	p.V237M	TGCACACAAGCAG	.	29	14	48	0	.	.	T	71894451	C	T	71894451	3	4	2	1	0	0	0	0	1	0	0	0	18225	478	17	3	533	3	ZNF821	16	71894451	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	14646601	71894451	18460302	78	241											
CLEC10A	10462	hgsc.bcm.edu	37	chr17	6979444	6979444	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggcctaggtgtgccttctgcGtagtgtgttcctggagctca	4	13	14	10	1	2	0	1	0	1	0	3	1	3	1	3	3	3	3	3	3	2	4	rs376732406		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CLEC10A,NS,carcinoma,0,2	CLEC10A	NM_182906	exon6	c.C380T	p.T127M	TTCTGCGTAGTGT	.	57	3	61	0	.	0	A	6979444	G	A	6979444	3	1	2	1	0	0	0	0	1	0	0	0	3518	1145	40	1	595	1	CLEC10A	17	6979444	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		6979444	74215766	79	242											
KDM6B	23135	hgsc.bcm.edu	37	chr17	7750177	7750177	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gccactgcctccaccaccatTaccaccaccaccaccaccac	11	4	2	24	0	0	0	0	0	0	0	1	0	1	0	11	0	2	0	11	0	1	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.,2	.	NM_001080424	exon9	c.T752C	p.L251S	CACCATTACCACC	.	11	3	17	0	.	95	C	7750177	T	C	7750177	3	2	2	1	0	0	0	0	1	0	0	0	8181	1764	61	4	774	4	KDM6B	17	7750177	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	770733	7750177	73445033	80	243											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36483728	36483728	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccccttctctgttgcttcCaaggaatgtccctctgccac	5	13	6	17	0	2	0	0	0	2	0	6	1	5	1	5	1	2	2	5	1	2	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001004334	exon11	c.G5724A	p.L1908L	TGCTTCCAAGGAA	.	33	10	16	0	.	.	T	36483728	C	T	36483728	2	4	2	1	0	0	0	0	0	0	0	1	6714	593	21	3		3	GPR179	17	36483728	Silent	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	28733551	36483728	44711482	81	244											
SKAP1	8631	hgsc.bcm.edu	37	chr17	46262165	46262165	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaggtggggggccatccGtacaccgtagcccttaatga	8	8	13	12	3	0	1	0	1	0	0	2	1	1	1	4	4	2	3	4	4	3	3	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	SKAP1,NS,carcinoma,0,2	SKAP1	NM_003726	exon7	c.C487T	p.R163W	CCATCCGTACACC	.	38	3	42	0	.	0	A	46262165	G	A	46262165	3	1	2	1	0	0	0	0	1	0	0	0	14410	1144	40	1	616	1	SKAP1	17	46262165	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	9778437	46262165	34933045	82	245											
TUBD1	51174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57944110	57944110	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gccatacatgcctatcaataCctaccaaaagaaaaaaaaag	21	6	4	10	0	1	1	1	0	0	1	1	1	1	1	4	0	4	0	4	0	11	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_016261	exon7	c.G935T	p.G312V	TCAATACCTACCA	.	57	24	70	0	.	.	A	57944110	C	A	57944110	3	1	2	1	0	0	0	0	1	0	0	0	16824	521	18	3	438	3	TUBD1	17	57944110	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	11681945	57944110	23251100	83	246											
SEC14L1	6397	broad.mit.edu	37	chr17	75210105	75210105	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctccatgatctccaggtaGtgccgcgctgcctgcaccta	7	9	10	15	2	1	1	0	1	1	0	3	1	2	1	5	1	4	4	5	1	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SEC14L1	NM_001143999	exon17	c.G2148A	p.X716X	CAGGTAGTGCCGC	.	72	5	77	0	.	81	A	75210105	G	A	75210105	2	1	2	1	0	0	0	0	0	0	0	1	14035	1024	36	3		3	SEC14L1	17	75210105	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	17265995	75210105	5985105	84	247											
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	18629827	18629827	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcgtaaatctctgattttatTtattgtgtctttatctgtat	8	23	5	5	1	3	1	0	1	3	0	5	1	3	1	0	0	0	2	0	0	6	9	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_005406	exon3	c.A190T	p.N64Y	TTTTATTTATTGT	.	30	11	22	0	.	.	A	18629827	T	A	18629827	3	1	2	1	0	0	0	0	1	0	0	0	13569	1841	64	5	3998	5	ROCK1	18	18629827	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09		18629827	59447421	85	248											
TCF4	6925	hgsc.bcm.edu	37	chr18	52895478	52895478	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatctgtcccatgtgattcGatgcgtctcccattccaggg	7	12	9	13	2	2	1	0	1	2	0	6	2	4	1	3	1	1	0	3	1	0	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	TCF4_ENST00000398339,NS,carcinoma,0,2	TCF4_ENST00000398339	NM_001243226	exon20	c.C2300A	p.S767X	TGATTCGATGCGT	.	42	2	68	0	.	0	T	52895478	G	T	52895478	4	4	2	1	0	0	0	0	0	1	0	0	15755	1059	37	2	25	2	TCF4	18	52895478	Nonsense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	34265651	52895478	25181770	86	249											
ATP8B3	148229	bcgsc.ca	37	chr19	1783099	1783099	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gattcagatgctatgtcactGctgacccctggtcccctccg	6	11	9	15	1	2	2	2	1	0	1	4	3	4	2	5	1	2	2	5	1	1	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	ATP8B3	NM_138813	exon29	c.C3831A	p.S1277R	GTCACTGCTGACC	.	18	3	30	0	.	108	T	1783099	T	T	1783099	3	4	2	1	0	0	0	0	1	0	0	0	1194	1310	46	3	75	3	ATP8B3	19	1783099	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		1783099	57345884	87	250											
MUC16	94025	bcgsc.ca	37	chr19	9070320	9070320	+	Missense_Mutation	SNP	G	C	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tatgcatggaagcatgcatgGcttctgtgtgcgcagtgtct	7	13	13	8	1	2	0	0	0	2	0	2	1	2	1	0	2	4	5	0	2	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	MUC16	NM_024690	exon3	c.C17126G	p.A5709G	TGCATGGCTTCTG	.	37	4	59	0	.	4315	C	9070320	C	C	9070320	3	2	2	1	0	0	0	0	1	0	0	0	10021	1203	42	5	26725	5	MUC16	19	9070320	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	7287221	9070320	50058663	88	251											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9089654	9089654	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caacagaggaatgctggtgcTtatcttggtgtgtcctgcag	8	12	13	8	0	1	1	0	0	1	1	2	2	2	2	1	3	4	3	1	3	3	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_024690	exon1	c.A2161G	p.S721G	TGGTGCTTATCTT	.	30	6	36	0	.	.	C	9089654	T	C	9089654	3	2	2	1	0	0	0	0	1	0	0	0	10021	1609	56	4	41698	4	MUC16	19	9089654	Missense_Mutation	SNP	T	TCGA-3X-AAVA-01A-11D-A417-09	19334	9089654	50039329	89	252											
TMEM147	10430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36037440	36037440	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gttctcagatgctgttcttgGccactttctttcccacctgg	4	16	8	13	0	3	1	1	0	3	1	5	1	4	1	3	2	1	3	3	2	0	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001242598	exon3	c.G160T	p.A54S	TTCTTGGCCACTT	.	21	7	45	0	.	.	T	36037440	G	T	36037440	3	4	2	1	0	0	0	0	1	0	0	0	16121	1203	42	3	170	3	TMEM147	19	36037440	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	26947786	36037440	23091543	90	253											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38579446	38579446	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagctggaagaccacaaggaGcacggacctcagtaccagta	15	4	11	11	1	1	1	1	0	0	1	1	4	1	4	3	3	3	4	3	3	5	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_015073	exon4	c.G1620A	p.E540E	CAAGGAGCACGGA	.	35	12	46	0	.	.	A	38579446	G	A	38579446	2	1	2	1	0	0	0	0	0	0	0	1	14386	962	34	3		3	SIPA1L3	19	38579446	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	2542006	38579446	20549537	91	254											
RELB	5971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45532159	45532159	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcccagaatccacaaacacAtcagagctgcggatttgccg	12	8	8	13	2	1	2	1	0	0	2	3	3	3	3	3	1	4	1	3	1	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	p.T300T	.	.	AAACACATCAGAG	.	38	15	59	0	.	.	G	45532159	A	G	45532159	2	3	2	1	0	0	0	0	0	0	0	1	13269	204	8	4		4	RELB	19	45532159	Silent	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09	6952713	45532159	13596824	92	255											
KLK5	25818	broad.mit.edu	37	chr19	51453322	51453322	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggttgctcccagagggcaCggtgttagaggggtggtcac	6	9	17	9	1	1	2	1	0	0	2	2	2	2	2	1	6	1	4	1	6	1	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KLK5	NM_012427	exon3	c.G124A	p.V42M	AGGGCACGGTGTT	.	38	3	50	0	.	37	T	51453322	C	T	51453322	3	4	2	1	0	0	0	0	1	0	0	0	8450	536	19	1	773	1	KLK5	19	51453322	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	5921163	51453322	7675661	93	256											
LENG1	79165	hgsc.bcm.edu	37	chr19	54662171	54662171	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gcagtgagttctgatgtctgGctttcttccgtaggaattct	6	16	11	8	1	4	2	0	2	4	0	5	3	5	3	1	2	0	4	1	2	2	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	LENG1,NS,neuroblastoma,0,1	LENG1	NM_024316	exon2	c.C161A	p.A54D	TGTCTGGCTTTCT	.	46	2	59	0	.	0	T	54662171	G	T	54662171	3	4	2	1	0	0	0	0	1	0	0	0	8762	1203	42	3	645	3	LENG1	19	54662171	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	3208849	54662171	4466812	94	257											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55146734	55146734	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcccagctgccgatgcccaGgaagaaaacctctgtgagtg	11	6	12	12	1	1	2	0	1	1	1	1	4	1	3	4	1	5	1	4	1	3	0	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001081637	exon12	c.G1587A	p.Q529Q	TGCCCAGGAAGAA	.	41	11	65	0	.	.	A	55146734	G	A	55146734	2	1	2	1	0	0	0	0	0	0	0	1	8830	991	35	3		3	LILRB1	19	55146734	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	484563	55146734	3982249	95	258											
ZNF416	55659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	58084364	58084364	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttggctaaatgatttcccaCactgaccacacacataaggc	13	10	6	12	0	0	2	0	2	0	0	1	2	1	2	2	2	0	1	2	2	3	4	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_017879	exon4	c.G908T	p.C303F	TTCCCACACTGAC	.	28	4	45	0	.	.	A	58084364	C	A	58084364	3	1	2	1	0	0	0	0	1	0	0	0	17950	478	17	3	880	3	ZNF416	19	58084364	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09	2937630	58084364	1044619	96	259											
GZF1	64412	ucsc.edu;bcgsc.ca	37	chr20	23345860	23345860	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagcaggtttccaaaaatgaGggttgccaggcaggtgctga	11	8	15	7	0	0	2	0	2	0	0	1	3	1	2	2	4	3	5	2	4	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	GZF1	NM_022482	exon1	c.G840T	p.E280D	AAATGAGGGTTGC	.	29	4	28	0	.	61	T	23345860	G	T	23345860	3	4	2	1	0	0	0	0	1	0	0	0	6955	991	35	3	842	3	GZF1	20	23345860	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09		23345860	39679660	97	260											
ZNF831	128611	hgsc.bcm.edu;bcgsc.ca	37	chr20	57766888	57766888	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccctgtccagggtccGcatttgccgacagagaggct	6	9	12	14	2	0	1	0	0	0	1	3	3	3	1	4	2	2	3	4	2	0	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_178457	exon1	c.G814A	p.A272T	GGGTCCGCATTTG	.	59	4	69	0	.	.	A	57766888	G	A	57766888	3	1	2	1	0	0	0	0	1	0	0	0	18232	1087	38	1	816	1	ZNF831	20	57766888	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	34421028	57766888	5258632	98	261											
ATP5O	539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	35276306	35276306	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggacagtttttaattcagagAgtgtggcttcttctaaaggc	10	14	11	6	0	3	1	1	0	2	1	3	3	3	2	0	3	0	2	0	3	3	7	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001697	exon6	c.T461A	p.L154H	TCAGAGAGTGTGG	.	157	23	150	0	.	.	T	35276306	A	T	35276306	3	4	2	1	0	0	0	0	1	0	0	0	1160	304	11	5	188	5	ATP5O	21	35276306	Missense_Mutation	SNP	A	TCGA-3X-AAVA-01A-11D-A417-09		35276306	12853589	99	262											
CHEK2	11200	hgsc.bcm.edu	37	chr22	29083913	29083913	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcacacacagctgggCgctttgtggtctcggcaccc	7	7	12	15	2	1	0	0	0	1	0	2	0	1	0	1	3	3	5	1	3	0	1	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CHEK2,NS,carcinoma,0,15	CHEK2	NM_001005735	exon16	c.G1733A	p.R578H	GCTGGGCGCTTTG	.	38	3	69	1	.	0	T	29083913	C	T	29083913	3	4	2	1	0	0	0	0	1	0	0	0	3357	768	27	1	31	1	CHEK2	22	29083913	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09		29083913	22220653	100	263											
MAGEB10	139422	broad.mit.edu	37	chrX	27840135	27840135	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggttatatgacggaattgagCacttcatgtttggggagccc	9	12	13	7	1	1	2	1	2	0	0	1	4	1	4	1	4	2	3	1	4	3	5	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	MAGEB10	NM_182506	exon3	c.C712T	p.H238Y	ATTGAGCACTTCA	.	33	6	42	0	.	107	T	27840135	C	T	27840135	3	4	2	1	0	0	0	0	1	0	0	0	9223	710	25	3	714	3	MAGEB10	23	27840135	Missense_Mutation	SNP	C	TCGA-3X-AAVA-01A-11D-A417-09		27840135	127430425	101	264											
VSIG1	340547	ucsc.edu;bcgsc.ca	37	chrX	107319375	107319375	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtgccgccatcatcatctctGttgtgtgcttcgcaaggaat	7	13	10	11	2	3	0	2	0	1	0	5	1	3	1	2	1	2	3	2	1	2	2	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	VSIG1	NM_001170553	exon7	c.G865T	p.V289F	ATCTCTGTTGTGT	.	35	4	50	0	.	126	T	107319375	G	T	107319375	3	4	2	1	0	0	0	0	1	0	0	0	17282	1377	48	3	891	3	VSIG1	23	107319375	Missense_Mutation	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	79479240	107319375	47951185	102	265											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154194709	154194709	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtgcttacctgtcatcGggggcgaggactaagggagc	11	7	15	8	2	1	0	1	0	0	0	2	3	1	2	1	4	3	1	1	4	4	2	rs145623784		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_000132	exon8	c.C1263T	p.P421P	GTCATCGGGGGCG	.	24	4	76	0	0.000	.	A	154194709	G	A	154194709	2	1	2	1	0	0	0	0	0	0	0	1	5378	1103	39	1		1	F8	23	154194709	Silent	SNP	G	TCGA-3X-AAVA-01A-11D-A417-09	46875334	154194709	1075851	103	266											
ATAD3A	55210	hgsc.bcm.edu;broad.mit.edu	37	chr1	1458913	1458913	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cagccggcggctcctcagtcGaccccaggacgcgctggagg	6	4	15	16	5	1	0	1	0	0	0	3	3	2	2	4	5	1	2	4	5	0	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_018188	exon9	c.G1073A	p.R358Q	TCAGTCGACCCCA	.	55	4	95	0	.	.	A	1458913	G	A	1458913	3	1	3	1	0	0	0	0	1	0	0	0	1072	1058	37	1	1107	1	ATAD3A	1	1458913	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		1458913	247791708	1	267											
DNAJC11	55735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	6713011	6713011	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtctgtcgctgtcaagggtgCctaaaaatggtatttgctgg	8	13	13	7	1	2	0	1	0	1	0	3	0	2	0	1	3	2	3	1	3	5	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_018198	exon6	c.G508A	p.A170T	AGGGTGCCTAAAA	.	34	4	58	0	.	.	T	6713011	C	T	6713011	3	4	3	1	0	0	0	0	1	0	0	0	4657	753	26	3	1215	3	DNAJC11	1	6713011	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	5254098	6713011	242537610	2	268											
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40724003	40724003	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ccggccgagaagcgtatcttCggggccgtgctgctcttttc	4	11	13	13	5	2	1	0	0	2	1	4	2	2	1	3	3	3	3	3	3	2	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_005857	exon1	c.C60T	p.F20F	TATCTTCGGGGCC	.	32	5	26	0	.	.	T	40724003	C	T	40724003	2	4	3	1	0	0	0	0	0	0	0	1	17756	883	31	1		1	ZMPSTE24	1	40724003	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	34010992	40724003	208526618	3	269											
PLK3	1263	broad.mit.edu	37	chr1	45266806	45266806	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacaacatctacattttcttGgagctctgcagccgaaaggt	11	11	9	10	1	3	0	0	0	3	0	3	3	3	1	1	2	5	2	1	2	3	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PLK3	NM_004073	exon3	c.G417T	p.L139F	TTTCTTGGAGCTC	.	25	3	48	0	.	41	T	45266806	G	T	45266806	3	4	3	1	0	0	0	0	1	0	0	0	12145	1339	47	3	427	3	PLK3	1	45266806	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	4542803	45266806	203983815	4	270											
MIER1	57708	hgsc.bcm.edu	37	chr1	67411833	67411833	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttgaaatattccttaccagGaggttcagcaacatcagatg	13	12	8	8	0	2	2	2	1	0	1	3	3	3	3	2	2	3	2	2	2	4	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MIER1_ENST00000401041,bladder,carcinoma,0,2	MIER1_ENST00000401041	NM_001077700	exon4	c.G194T	p.G65V	TACCAGGAGGTTC	.	62	3	133	0	.	0	T	67411833	G	T	67411833	3	4	3	1	0	0	0	0	1	0	0	0	9628	1188	41	3	285	3	MIER1	1	67411833	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	22145027	67411833	181838788	5	271											
HFM1	164045	hgsc.bcm.edu	37	chr1	91784927	91784927	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aatcttgtatgggaatgcatCctagttgagcctgaataaga	13	12	10	6	0	1	3	0	2	1	1	2	4	2	4	2	1	2	3	2	1	6	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HFM1,NS,carcinoma,0,1	HFM1	NM_001017975	exon24	c.G2603T	p.G868V	ATGCATCCTAGTT	.	69	3	133	0	.	0	A	91784927	C	A	91784927	3	1	3	1	0	0	0	0	1	0	0	0	7124	855	30	3	1768	3	HFM1	1	91784927	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	24373094	91784927	157465694	6	272											
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145473924	145473924	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggaggaggagggcgtgggaTgttatcccctcgcgcccagg	6	7	18	10	3	0	0	0	0	0	0	2	4	1	4	3	6	0	1	3	6	1	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001039888	exon4	c.T596G	p.M199R	GTGGGATGTTATC	.	28	7	50	0	.	.	G	145473924	T	G	145473924	3	3	3	1	0	0	0	0	1	0	0	0	657	1464	51	4	598	4	ANKRD34A	1	145473924	Missense_Mutation	SNP	T	TCGA-3X-AAVB-01A-31D-A417-09	53688997	145473924	103776697	7	273											
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	chr1	152281163	152281163	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttgtggctctgctgatgggGcccagcttttccctgtgctg	2	15	13	11	0	1	1	0	1	1	0	2	1	2	1	2	3	3	4	2	3	0	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.C6199T	p.P2067S	GATGGGGCCCAGC	.	67	4	121	0	.	0	A	152281163	G	A	152281163	3	1	3	1	0	0	0	0	1	0	0	0	5955	1203	42	3	5990	3	FLG	1	152281163	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	6807239	152281163	96969458	8	274											
CKS1B	1163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154950570	154950570	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagagtcagggatgggtccAttatatgatccatgaaccag	12	9	12	8	0	1	3	1	2	0	1	3	4	3	4	3	2	1	1	3	2	3	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001826	exon2	c.A167T	p.H56L	GGGTCCATTATAT	.	73	15	148	0	.	.	T	154950570	A	T	154950570	3	4	3	1	0	0	0	0	1	0	0	0	3475	217	8	5	173	5	CKS1B	1	154950570	Missense_Mutation	SNP	A	TCGA-3X-AAVB-01A-31D-A417-09	2669407	154950570	94300051	9	275											
HSD17B7	51478	hgsc.bcm.edu	37	chr1	162769603	162769603	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catctggacatcatctcgcaGtgcaaggaaatctaatttca	13	11	7	10	1	5	0	2	0	3	0	6	2	5	2	0	2	1	2	0	2	3	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HSD17B7,NS,carcinoma,0,5	HSD17B7	NM_016371	exon5	c.G518A	p.S173N	CTCGCAGTGCAAG	.	25	2	72	0	.	0	A	162769603	G	A	162769603	3	1	3	1	0	0	0	0	1	0	0	0	7429	1029	36	3	536	3	HSD17B7	1	162769603	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	7819033	162769603	86481018	10	276											
SELP	6403	hgsc.bcm.edu	37	chr1	169564103	169564103	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttattaacatgtagttctGagcatttcacagctgcagaa	12	13	8	8	0	2	2	1	1	1	1	2	2	2	2	0	0	4	6	0	0	4	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SELP,NS,carcinoma,0,1	SELP	NM_003005	exon13	c.C2114A	p.S705X	AGTTCTGAGCATT	.	35	2	107	0	.	0	T	169564103	G	T	169564103	4	4	3	1	0	0	0	0	0	1	0	0	14073	1294	45	3	394	3	SELP	1	169564103	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	6794500	169564103	79686518	11	277											
ZP4	57829	hgsc.bcm.edu;broad.mit.edu	37	chr1	238048735	238048735	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggctgactcagggggtcagtGctgggtgttgcccaacactg	6	9	16	10	0	2	1	2	1	0	0	2	1	2	1	1	4	3	3	1	4	1	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZP4,right_lower_lobe,carcinoma,0,1	ZP4	NM_021186	exon8	c.C1116A	p.S372R	GTCAGTGCTGGGT	.	42	3	68	0	.	0	T	238048735	G	T	238048735	3	4	3	1	0	0	0	0	1	0	0	0	18260	1310	46	3	526	3	ZP4	1	238048735	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	68484632	238048735	11201886	12	278											
OR2L8	391190	hgsc.bcm.edu	37	chr1	248112794	248112794	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctcgtgtttcccttcattgGtatttcatgttcctatggcc	4	19	7	11	1	3	0	2	0	1	0	6	0	5	0	3	2	0	3	3	2	2	7	rs200574966		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	OR2L8,NS,carcinoma,0,2	OR2L8	NM_001001963	exon1	c.G635C	p.G212A	TCATTGGTATTTC	.	42	2	90	1	.	0	C	248112794	G	C	248112794	3	2	3	1	0	0	0	0	1	0	0	0	11057	1261	44	5	637	5	OR2L8	1	248112794	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	10064059	248112794	1137827	13	279											
SNRNP200	23020	bcgsc.ca	37	chr2	96962808	96962808	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cttttccactggaagcagttGctagaagaaaagaagtgcca	14	9	10	8	0	0	3	0	0	0	3	1	4	1	4	2	1	3	3	2	1	6	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	SNRNP200	NM_014014	exon12	c.C1378A	p.Q460K	GCAGTTGCTAGAA	.	21	3	34	0	.	195	T	96962808	T	T	96962808	3	4	3	1	0	0	0	0	1	0	0	0	14906	1333	46	3	5168	3	SNRNP200	2	96962808	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		96962808	146236565	14	280											
ITGA6	3655	hgsc.bcm.edu	37	chr2	173349546	173349546	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctgaaaaagaaagaaGaaaatctgggctatcctcaa	19	7	9	6	0	2	5	1	2	1	3	3	5	3	5	1	1	1	2	1	1	9	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ITGA6_ENST00000409080,NS,carcinoma,0,2	ITGA6_ENST00000409080	NM_000210	exon12	c.G1586T	p.R529I	AAAGAAGAAAATC	.	39	2	102	0	.	0	T	173349546	G	T	173349546	3	4	3	1	0	0	0	0	1	0	0	0	7924	942	33	3	1632	3	ITGA6	2	173349546	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	76386738	173349546	69849827	15	281											
NMUR1	10316	bcgsc.ca	37	chr2	232393062	232393062	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	catgttgtagagggcccgtgGgcggaccagcatgcaaacag	10	6	15	10	2	0	1	0	0	0	1	0	2	0	2	2	3	3	4	2	3	2	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	NMUR1	NM_006056	exon2	c.C670A	p.P224T	CCCGTGGGCGGAC	.	12	3	34	0	.	46	T	232393062	T	T	232393062	3	4	3	1	0	0	0	0	1	0	0	0	10553	1232	43	3	618	3	NMUR1	2	232393062	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	59043516	232393062	10806311	16	282											
COPS7B	64708	bcgsc.ca	37	chr2	232653436	232653436	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cttctggagctggccaacgtGcaggaggtaagaacggtttg	9	9	15	8	2	1	1	0	0	1	1	1	3	1	3	1	5	4	4	1	5	3	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	COPS7B	NM_022730	exon2	c.G156T	p.V52V	CAACGTGCAGGAG	.	64	4	107	0	.	14	T	232653436	T	T	232653436	2	4	3	1	0	0	0	0	0	0	0	1	3762	1306	46	3		3	COPS7B	2	232653436	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	260374	232653436	10545937	17	283											
CPNE9	151835	broad.mit.edu;bcgsc.ca	37	chr3	9746275	9746275	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcttttctctaggaacCtgctagaccttgataccttc	7	16	7	11	0	1	2	0	1	1	1	3	3	1	3	3	1	4	3	3	1	4	8	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CPNE9	.	.	.	.	AGGAACCTGCTAG	.	19	8	49	0	.	45	G	9746275	C	G	9746275	3	3	3	1	0	0	0	0	1	0	0	0	3842	680	24	5	79	5	CPNE9	3	9746275	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		9746275	188276155	18	284											
FLNB	2317	ucsc.edu	37	chr3	58090844	58090844	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttggccctgaagcgggtatgCagaaagtccgtgcttggggc	7	9	16	9	2	0	2	0	1	0	1	1	2	1	2	2	4	3	3	2	4	3	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	FLNB	NM_001457	exon11	c.C1648T	p.Q550X	GGTATGCAGAAAG	.	40	4	70	0	.	430	T	58090844	C	T	58090844	4	4	3	1	0	0	0	0	0	1	0	0	5967	711	25	3	1690	3	FLNB	3	58090844	Nonsense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	48344569	58090844	139931586	19	285											
CADPS	8618	hgsc.bcm.edu	37	chr3	62477973	62477973	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatacatacagtcagtaCggagaaaatcattcagcagc	16	8	9	8	1	3	1	3	0	0	1	3	2	3	1	0	2	5	3	0	2	6	5	rs376315928		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CADPS_ENST00000383710,NS,carcinoma,0,2	CADPS_ENST00000383710	NM_183394	exon19	c.G2906A	p.R969H	TCAGTACGGAGAA	.	37	2	72	0	.	0	T	62477973	C	T	62477973	3	4	3	1	0	0	0	0	1	0	0	0	2588	536	19	1	1229	1	CADPS	3	62477973	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	4387129	62477973	135544457	20	286											
HEG1	57493	hgsc.bcm.edu	37	chr3	124732804	124732804	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcctttgttcaatagctgtgCcacgcacttgaccgtagcta	8	13	8	12	2	1	1	1	1	0	0	2	1	2	1	3	0	3	5	3	0	4	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HEG1,colon,carcinoma,0,1	HEG1	NM_020733	exon6	c.G1619A	p.G540D	GCTGTGCCACGCA	.	28	2	48	0	.	0	T	124732804	C	T	124732804	3	4	3	1	0	0	0	0	1	0	0	0	7085	739	26	3	2574	3	HEG1	3	124732804	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	62254831	124732804	73289626	21	287											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	197703534	197703534	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggtactgcaccggggagtGtgccgcacacacaaagtgcg	10	5	14	12	3	0	0	0	0	0	0	0	1	0	1	2	3	4	3	2	3	2	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001136049	exon5	c.G497T	p.C166F	GGGAGTGTGCCGC	.	50	4	97	0	.	.	T	197703534	G	T	197703534	3	4	3	1	0	0	0	0	1	0	0	0	8888	1377	48	3	515	3	LMLN	3	197703534	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	72970730	197703534	318896	22	288											
FRG1	2483	hgsc.bcm.edu	37	chr4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggagagccaaattgaaagccGacagatactgcaagtgactg	15	6	12	8	1	0	4	0	2	0	2	0	6	0	4	2	1	4	1	2	1	4	2	rs373037319		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	34	3	77	1	.	0	A	190884267	G	A	190884267	3	1	3	1	0	0	0	0	1	0	0	0	6081	1058	37	1	794	1	FRG1	4	190884267	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		190884267	270009	23	289											
CAST	831	hgsc.bcm.edu	37	chr5	96073607	96073607	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atactttaggaggacctgaaGaaactgaagaagaaaataca	20	7	9	5	0	0	5	0	2	0	3	0	7	0	7	1	2	3	0	1	2	9	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CAST,NS,carcinoma,0,1	CAST	NM_001042440	exon9	c.G631T	p.E211X	CCTGAAGAAACTG	.	39	2	67	0	.	0	T	96073607	G	T	96073607	4	4	3	1	0	0	0	0	0	1	0	0	2702	943	33	3	796	3	CAST	5	96073607	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		96073607	84841653	24	290											
DMXL1	1657	bcgsc.ca	37	chr5	118580098	118580098	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ccacagttttagcatatgctCcaaaacatcagctactaata	15	11	4	11	0	1	0	1	0	0	0	2	0	2	0	2	0	5	4	2	0	7	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	DMXL1	NM_005509	exon42	c.C8686A	p.P2896T	TATGCTCCAAAAC	.	61	4	92	0	.	268	A	118580098	A	A	118580098	3	1	3	1	0	0	0	0	1	0	0	0	4622	855	30	3	8852	3	DMXL1	5	118580098	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	22506491	118580098	62335162	25	291											
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131729481	131729481	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccccactcccagacaccattGaccagatgctaagagtcaaa	14	6	6	15	0	1	4	1	1	0	3	2	4	2	4	5	0	1	1	5	0	2	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_003060	exon9	c.G1564A	p.D522N	ACCATTGACCAGA	.	31	5	59	0	.	.	A	131729481	G	A	131729481	3	1	3	1	0	0	0	0	1	0	0	0	14512	1290	45	3	1598	3	SLC22A5	5	131729481	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	13149383	131729481	49185779	26	292											
TMCO6	55374	bcgsc.ca	37	chr5	140024571	140024571	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttccctgcccctaggCtgttcaggtcttcctgcagc	3	15	8	15	0	3	0	1	0	2	0	5	0	5	0	4	2	3	3	4	2	1	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TMCO6	NM_018502	exon12	c.C1370T	p.A457V	CCTAGGCTGTTCA	.	13	3	19	0	.	30	T	140024571	T	T	140024571	3	4	3	1	0	0	0	0	1	0	0	0	16060	811	28	3	1416	3	TMCO6	5	140024571	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	8295090	140024571	40890689	27	293											
ITK	3702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156670696	156670696	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gattggcagtgggcaatttgGgttggtgcatctgggctact	6	13	16	6	0	1	0	0	0	1	0	1	1	1	0	0	5	2	5	0	5	2	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_005546	exon12	c.G1124T	p.G375V	AATTTGGGTTGGT	.	53	19	68	0	.	.	T	156670696	G	T	156670696	3	4	3	1	0	0	0	0	1	0	0	0	7953	1232	43	3	1170	3	ITK	5	156670696	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	16646125	156670696	24244564	28	294											
GABRA1	2554	hgsc.bcm.edu	37	chr5	161324315	161324315	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaacagtgtcagcaaaattGaccgactgtcaagaatagcc	15	9	8	9	1	2	2	2	1	0	1	2	3	2	2	2	0	3	1	2	0	6	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	GABRA1,NS,carcinoma,0,1	GABRA1	NM_001127643	exon11	c.G1258T	p.D420Y	AAAATTGACCGAC	.	41	3	67	0	.	0	T	161324315	G	T	161324315	3	4	3	1	0	0	0	0	1	0	0	0	6195	1290	45	3	1292	3	GABRA1	5	161324315	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	4653619	161324315	19590945	29	295											
RPL10A	4736	hgsc.bcm.edu	37	chr6	35438392	35438392	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtagctgttggtcacgtgaaGatgacagacgatgagcttgt	10	11	14	6	2	1	5	1	3	0	2	1	6	1	5	0	1	2	4	0	1	2	3	rs1061530	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RPL10A,colon,carcinoma,0,1	RPL10A	NM_007104	exon6	c.G519T	p.K173N	CGTGAAGATGACA	.	53	2	122	0	.	0	T	35438392	G	T	35438392	3	4	3	1	0	0	0	0	1	0	0	0	13607	933	33	3	541	3	RPL10A	6	35438392	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		35438392	135676675	30	296											
XPO5	57510	bcgsc.ca	37	chr6	43501688	43501688	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caagcatatccagagccttgGtgaaaggctctgccattttg	10	11	10	10	0	1	2	0	1	1	1	2	2	2	2	3	2	3	2	3	2	3	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	XPO5	NM_020750	exon21	c.C2399A	p.T800N	GCCTTGGTGAAAG	.	22	3	33	0	.	79	T	43501688	T	T	43501688	3	4	3	1	0	0	0	0	1	0	0	0	17507	1261	44	3	1263	3	XPO5	6	43501688	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	8063296	43501688	127613379	31	297											
HSP90AB1	3326	broad.mit.edu	37	chr6	44221231	44221231	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaattttacttcaggtattGatgaagatgaagtggcagca	13	14	10	4	0	1	4	1	3	0	1	1	4	1	4	0	2	2	3	0	2	5	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HSP90AB1,colon,carcinoma,-1,1	HSP90AB1	NM_007355	exon12	c.G2071T	p.D691Y	GGTATTGATGAAG	.	34	3	38	0	.	83	T	44221231	G	T	44221231	3	4	3	1	0	0	0	0	1	0	0	0	7445	1290	45	3	2113	3	HSP90AB1	6	44221231	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	719543	44221231	126893836	32	298											
TNFRSF21	27242	hgsc.bcm.edu	37	chr6	47251781	47251781	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgggatcctgccggggccccTttttcagagtcctcgagctt	4	12	12	13	2	1	1	1	0	0	1	4	3	3	2	5	3	2	1	5	3	0	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TNFRSF21,right_lower_lobe,carcinoma,0,1	TNFRSF21	NM_014452	exon3	c.A1136G	p.K379R	GGCCCCTTTTTCA	.	29	2	55	0	.	0	C	47251781	T	C	47251781	3	2	3	1	0	0	0	0	1	0	0	0	16355	1609	56	4	847	4	TNFRSF21	6	47251781	Missense_Mutation	SNP	T	TCGA-3X-AAVB-01A-31D-A417-09	3030550	47251781	123863286	33	299											
WASF1	8936	hgsc.bcm.edu	37	chr6	110423269	110423269	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggggaggtactggagggggAggagttgaagtcattgaagc	10	7	21	3	0	1	2	1	2	0	0	1	6	1	6	0	7	2	2	0	7	3	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	WASF1,colon,carcinoma,0,1	WASF1	NM_001024935	exon9	c.T1044C	p.P348P	AGGGGGAGGAGTT	.	22	4	32	1	.	0	G	110423269	A	G	110423269	2	3	3	1	0	0	0	0	0	0	0	1	17312	291	11	4		4	WASF1	6	110423269	Silent	SNP	A	TCGA-3X-AAVB-01A-31D-A417-09	63171488	110423269	60691798	34	300											
LAMA2	3908	hgsc.bcm.edu	37	chr6	129777488	129777488	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtacccttgaagaactgggaGaaatggaactatttctgtga	13	11	11	6	0	1	4	0	2	1	2	1	6	1	5	1	2	3	1	1	2	6	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_000426	exon48	c.G6716T	p.R2239I	CTGGGAGAAATGG	.	45	4	74	0	.	.	T	129777488	G	T	129777488	3	4	3	1	0	0	0	0	1	0	0	0	8645	942	33	3	6906	3	LAMA2	6	129777488	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	19354219	129777488	41337579	35	301											
SGK1	6446	bcgsc.ca	37	chr6	134492266	134492266	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcagctggagaggcttGttcagaatgttgtcgtacat	8	14	13	6	1	2	2	2	0	0	2	3	3	2	2	0	3	2	6	0	3	2	5	rs78176488	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SGK1_ENST00000528577,NS,carcinoma,0,5	SGK1	NM_001143676	exon12	c.C1218A	p.N406K	AGGCTTGTTCAGA	.	37	15	53	1	.	387	T	134492266	T	T	134492266	3	4	3	1	0	0	0	0	1	0	0	0	14261	1368	48	3	374	3	SGK1	6	134492266	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	4714778	134492266	36622801	36	302											
PDE7B	27115	hgsc.bcm.edu	37	chr6	136512843	136512843	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaacatgctgggccacctCgcacacaacaaggcccagtg	12	4	11	14	1	0	1	0	0	0	1	1	2	0	1	3	2	3	2	3	2	3	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	PDE7B,NS,malignant_melanoma,+2,1	PDE7B	NM_018945	exon13	c.C1218A	p.L406L	CCACCTCGCACAC	.	32	2	59	0	.	+2	A	136512843	C	A	136512843	2	1	3	1	0	0	0	0	0	0	0	1	11699	871	31	2		2	PDE7B	6	136512843	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	2020577	136512843	34602224	37	303											
DAGLB	221955	hgsc.bcm.edu;bcgsc.ca	37	chr7	6487440	6487440	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caagtcgtcgctggcgatggCccagcgccggccgaagagta	8	5	15	13	6	0	1	0	0	0	1	2	3	0	1	3	3	1	2	3	3	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_139179	exon1	c.G34A	p.A12T	CGATGGCCCAGCG	.	75	4	96	0	.	.	T	6487440	C	T	6487440	3	4	3	1	0	0	0	0	1	0	0	0	4251	739	26	3	2044	3	DAGLB	7	6487440	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		6487440	152651223	38	304											
SNX13	23161	hgsc.bcm.edu	37	chr7	17836491	17836491	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcgtttttcctgctactcttGttctcattcgaatactttta	6	21	4	10	2	2	0	1	0	2	0	6	1	3	0	1	0	3	3	1	0	4	9	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SNX13,caecum,carcinoma,0,1	SNX13	NM_015132	exon25	c.C2585A	p.T862K	ACTCTTGTTCTCA	.	43	2	91	0	.	0	T	17836491	G	T	17836491	3	4	3	1	0	0	0	0	1	0	0	0	14938	1377	48	3	296	3	SNX13	7	17836491	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	11349051	17836491	141302172	39	305											
ABCB5	340273	hgsc.bcm.edu	37	chr7	20778674	20778674	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cgttttggctcctgaatattCcaaagccaaatcgggggctg	9	11	11	10	2	0	1	0	1	0	0	3	1	2	1	3	3	1	3	3	3	4	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ABCB5_ENST00000404938,right_upper_lobe,carcinoma,0,2	ABCB5_ENST00000404938	NM_001163941	exon24	c.C2936A	p.S979Y	AATATTCCAAAGC	.	53	3	75	0	.	0	A	20778674	C	A	20778674	3	1	3	1	0	0	0	0	1	0	0	0	44	855	30	3	3067	3	ABCB5	7	20778674	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	2942183	20778674	138359989	40	306											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ttgttgcagatcagaagaagGaggaggaggaggaggcggca	13	5	19	4	1	1	3	1	0	0	3	1	8	1	8	0	7	1	3	0	7	2	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG	.	39	5	67	1	.	0	A	21468306	G	A	21468306	3	1	3	1	0	0	0	0	1	0	0	0	15020	1175	41	3	25	3	SP4	7	21468306	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	689632	21468306	137670357	41	307											
TBX20	57057	bcgsc.ca	37	chr7	35242184	35242184	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cttgcatggagctggcaatgGccgatggtgtcagaggcatt	8	10	15	8	1	1	1	1	0	0	1	1	3	1	2	1	5	2	4	1	5	1	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TBX20	NM_001077653	exon8	c.C1202T	p.A401V	GCAATGGCCGATG	.	47	4	77	0	.	96	A	35242184	A	A	35242184	3	1	3	1	0	0	0	0	1	0	0	0	15716	1203	42	3	144	3	TBX20	7	35242184	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	13773878	35242184	123896479	42	308											
ELMO1	9844	hgsc.bcm.edu	37	chr7	36910057	36910057	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcctttcccgtcaccaCggctttgatatctgccaccg	6	11	8	16	3	2	1	1	1	1	0	4	1	4	1	5	1	1	2	5	1	1	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ELMO1,NS,carcinoma,0,2	ELMO1	NM_014800	exon20	c.G1846T	p.V616L	TCACCACGGCTTT	.	42	2	38	0	.	0	A	36910057	C	A	36910057	3	1	3	1	0	0	0	0	1	0	0	0	5093	536	19	2	349	2	ELMO1	7	36910057	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	1667873	36910057	122228606	43	309											
POLM	27434	bcgsc.ca	37	chr7	44113248	44113248	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tccgggtcaaacagcccatgGctgttcagccacaggccctt	8	8	10	15	1	2	0	2	0	0	0	3	0	3	0	4	3	3	2	4	3	1	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	POLM	NM_013284	exon10	c.C1374T	p.S458S	CCCATGGCTGTTC	.	33	4	64	0	.	50	A	44113248	A	A	44113248	2	1	3	1	0	0	0	0	0	0	0	1	12254	1194	42	3		3	POLM	7	44113248	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	7203191	44113248	115025415	44	310											
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	71868298	71868298	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccctccgagggctcctccGtccccctttttctcattctc	2	13	5	21	2	2	0	1	0	2	0	8	1	6	0	7	1	0	1	7	1	0	3	rs376303075		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_031468	exon2	c.C57T	p.D19D	TCCTCCGTCCCCC	.	97	35	156	0	.	.	A	71868298	G	A	71868298	2	1	3	1	0	0	0	0	0	0	0	1	2609	1136	40	1		1	CALN1	7	71868298	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	27755050	71868298	87270365	45	311											
NSUN5	55695	hgsc.bcm.edu;bcgsc.ca	37	chr7	72722459	72722459	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcggccgcagcttcttctccGcacggaggaggccggcgctg	4	6	16	15	6	2	0	0	0	2	0	3	2	2	2	3	5	1	4	3	5	0	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_148956	exon2	c.C185A	p.A62E	TTCTCCGCACGGA	.	46	4	70	0	.	.	T	72722459	G	T	72722459	3	4	3	1	0	0	0	0	1	0	0	0	10729	1087	38	2	1272	2	NSUN5	7	72722459	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	854161	72722459	86416204	46	312											
ACHE	43	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100490325	100490325	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tacctggggaaccccgacccGcaccccggccaggaactcgg	8	3	12	18	4	0	0	0	0	0	0	1	3	0	2	7	5	3	1	7	5	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ACHE	NM_000665	exon3	c.C1183T	p.R395W	CGACCCGCACCCC	.	116	16	102	1	.	80	A	100490325	G	A	100490325	3	1	3	1	0	0	0	0	1	0	0	0	141	1086	38	1	808	1	ACHE	7	100490325	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	27767866	100490325	58648338	47	313											
NAMPT	10135	ucsc.edu;bcgsc.ca	37	chr7	105894816	105894816	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaaaggtgacataccccaagGccattagttacaacatagct	16	8	7	10	0	0	1	0	1	0	0	0	1	0	1	3	2	4	2	3	2	8	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	NAMPT	NM_005746	exon9	c.C1224A	p.G408G	CCCAAGGCCATTA	.	36	4	70	0	.	37	T	105894816	G	T	105894816	2	4	3	1	0	0	0	0	0	0	0	1	10197	1190	42	3		3	NAMPT	7	105894816	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	5404491	105894816	53243847	48	314											
CCDC136	64753	hgsc.bcm.edu	37	chr7	128446399	128446399	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacttcagactgagctcCggcagctcaaagtcatgaaa	13	8	9	11	1	3	3	3	2	0	1	4	3	4	3	1	1	4	4	1	1	3	1	rs368845976	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CCDC136,NS,carcinoma,0,1	CCDC136	NM_022742	exon8	c.C1198A	p.R400R	GAGCTCCGGCAGC	.	16	2	27	0	.	0	A	128446399	C	A	128446399	2	1	3	1	0	0	0	0	0	0	0	1	2788	643	23	2		2	CCDC136	7	128446399	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	22551583	128446399	30692264	49	315											
C7orf33	202865	hgsc.bcm.edu	37	chr7	148288051	148288051	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaagcctcagccttgaaGagtgtccctggagacttcca	10	10	9	12	0	2	3	2	1	0	2	4	4	4	3	4	1	2	0	4	1	2	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	C7orf33,colon,carcinoma,0,1	C7orf33	NM_145304	exon1	c.G34T	p.E12X	CTTGAAGAGTGTC	.	37	2	73	0	.	0	T	148288051	G	T	148288051	4	4	3	1	0	0	0	0	0	1	0	0	2404	943	33	3	36	3	C7orf33	7	148288051	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	19841652	148288051	10850612	50	316											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151891214	151891214	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	aacatcttttccgccaagctCtaggagataaaacaataata	17	10	5	9	1	2	1	0	0	2	1	3	2	3	1	2	1	3	1	2	1	8	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MLL3_ENST00000355193,bladder,carcinoma,0,2	MLL3_ENST00000355193	NM_170606	exon32	c.4541-1G>C	.	CAAGCTCTAGGAG	.	50	9	88	0	.	0	G	151891214	C	G	151891214	5	3	3	1	0	0	0	0	0	0	1	0	9670	927	32	5	10311	5	MLL3	7	151891214	Splice_Site	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	3603163	151891214	7247449	51	317											
OTUD6B	51633	hgsc.bcm.edu	37	chr8	92096314	92096314	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcccattatagttggtgaaGaatattcaaaaaaaccacta	17	11	5	8	0	1	2	1	1	0	1	2	2	2	2	2	1	1	1	2	1	9	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	OTUD6B,colon,carcinoma,0,2	OTUD6B	NM_016023	exon6	c.G859T	p.E287X	GGTGAAGAATATT	.	49	2	68	0	.	0	T	92096314	G	T	92096314	4	4	3	1	0	0	0	0	0	1	0	0	11364	943	33	3	881	3	OTUD6B	8	92096314	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		92096314	54267708	52	318											
ERMP1	79956	hgsc.bcm.edu	37	chr9	5810057	5810057	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tatgtataagtattattttgGctacagttgcagttccatac	11	17	7	6	0	0	0	0	0	0	0	1	0	1	0	1	1	3	6	1	1	7	11	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ERMP1,colon,carcinoma,0,1	ERMP1	NM_024896	exon8	c.C1502A	p.A501D	ATTTTGGCTACAG	.	38	2	64	1	.	0	T	5810057	G	T	5810057	3	4	3	1	0	0	0	0	1	0	0	0	5264	1203	42	3	1244	3	ERMP1	9	5810057	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		5810057	135403374	53	319											
ERMP1	79956	hgsc.bcm.edu	37	chr9	5825098	5825098	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaaatctcacttgcaaGacattttcctcagcaccatt	13	12	4	12	0	2	1	2	0	1	1	4	1	3	1	2	0	2	3	2	0	3	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024896	exon3	c.C762A	p.V254V	TTGCAAGACATTT	.	71	4	126	0	.	.	T	5825098	G	T	5825098	2	4	3	1	0	0	0	0	0	0	0	1	5264	929	33	3		3	ERMP1	9	5825098	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	15041	5825098	135388333	54	320											
RNF38	152006	hgsc.bcm.edu	37	chr9	36376031	36376031	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atttgatgtcatctcccatgGtcgcattggtggtgagggag	7	13	14	7	1	2	2	1	2	1	0	4	3	2	3	1	4	0	1	1	4	0	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RNF38,NS,carcinoma,0,1	RNF38	NM_022781	exon3	c.C256A	p.P86T	CCCATGGTCGCAT	.	45	2	92	0	.	0	T	36376031	G	T	36376031	3	4	3	1	0	0	0	0	1	0	0	0	13542	1261	44	3	1331	3	RNF38	9	36376031	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	30550933	36376031	104837400	55	321											
C9orf135	138255	hgsc.bcm.edu;bcgsc.ca	37	chr9	72501779	72501779	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattgacaacgtactcagaaGattatgttccaccatatgat	14	12	6	9	1	1	4	1	2	0	2	2	4	2	4	2	0	2	2	2	0	5	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001010940	exon5	c.G475T	p.D159Y	TCAGAAGATTATG	.	42	4	97	0	.	.	T	72501779	G	T	72501779	3	4	3	1	0	0	0	0	1	0	0	0	2476	942	33	3	493	3	C9orf135	9	72501779	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	36125748	72501779	68711652	56	322											
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88631517	88631517	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agtcgtgccgatggctctcaAatggcagaggaaaggataat	13	8	13	7	2	1	1	1	0	1	1	3	4	1	3	1	4	1	2	1	4	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024635	exon18	c.A1632T	p.Q544H	CTCTCAAATGGCA	.	27	18	60	0	.	.	T	88631517	A	T	88631517	3	4	3	1	0	0	0	0	1	0	0	0	10171	11	1	5	1698	5	NAA35	9	88631517	Missense_Mutation	SNP	A	TCGA-3X-AAVB-01A-31D-A417-09	16129738	88631517	52581914	57	323											
KIAA0368	23392	hgsc.bcm.edu	37	chr9	114133913	114133913	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctttacctttcctgcccaCgttcttccagccaggccttg	4	14	6	17	1	1	0	0	0	1	0	4	0	4	0	7	1	3	1	7	1	1	6	rs372133962	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KIAA0368,NS,carcinoma,0,1	KIAA0368	NM_001080398	exon44	c.G5259A	p.T1753T	TGCCCACGTTCTT	.	44	2	81	0	.	0	T	114133913	C	T	114133913	2	4	3	1	0	0	0	0	0	0	0	1	8213	523	19	1		1	KIAA0368	9	114133913	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	25502396	114133913	27079518	58	324											
ANKRD16	54522	hgsc.bcm.edu	37	chr10	5925099	5925099	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctgccctgtgcagagcctggGcacccaggctgtcttctgct	4	10	12	15	0	2	1	0	0	2	1	2	1	2	1	3	2	4	4	3	2	0	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ANKRD16,caecum,carcinoma,0,1	ANKRD16	NM_001009943	exon5	c.C719T	p.A240V	GCCTGGGCACCCA	.	16	2	16	0	.	0	A	5925099	G	A	5925099	3	1	3	1	0	0	0	0	1	0	0	0	641	1203	42	3	378	3	ANKRD16	10	5925099	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		5925099	129609648	59	325											
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	52601740	52601740	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	catcatcattctcatttcatAaattttaccgatctgcaagt	12	16	3	10	1	5	0	4	0	2	0	6	1	5	0	1	0	2	1	1	0	4	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001198820	exon6	c.T271C	p.Y91H	TTTCATAAATTTT	.	41	17	88	0	.	.	G	52601740	A	G	52601740	3	3	3	1	0	0	0	0	1	0	0	0	2	362	13	4	1573	4	A1CF	10	52601740	Missense_Mutation	SNP	A	TCGA-3X-AAVB-01A-31D-A417-09	46676641	52601740	82933007	60	326											
DLG5	9231	hgsc.bcm.edu	37	chr10	79613209	79613209	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagcaggtttcgctccCgcagcagctgcccattctcc	5	9	10	17	2	1	0	0	0	1	0	4	0	2	0	3	1	5	8	3	1	0	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	DLG5,NS,carcinoma,0,1	DLG5	NM_004747	exon5	c.G767A	p.R256Q	CGCTCCCGCAGCA	.	28	2	60	0	.	0	T	79613209	C	T	79613209	3	4	3	1	0	0	0	0	1	0	0	0	4586	652	23	1	5104	1	DLG5	10	79613209	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	27011469	79613209	55921538	61	327											
MUC2	4583	bcgsc.ca	37	chr11	1093312	1093312	+	Missense_Mutation	SNP	C	G	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ccactacggtgaccccaaccCcaacacccaccggcacacag	12	2	6	21	2	0	1	0	1	0	0	0	1	0	1	7	2	3	1	7	2	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	MUC2	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	279	18	487	17	.	614	G	1093312	G	G	1093312	3	3	3	1	0	0	0	0	1	0	0	0	10023	623	22	5	5249	5	MUC2	11	1093312	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		1093312	133913204	62	328											
KRTAP5-5	439915	hgsc.bcm.edu	37	chr11	1651251	1651251	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgggggatgtggctccGgctgctgtgtgcctgtctgc	1	12	18	10	1	1	0	0	0	1	0	2	1	2	1	2	4	3	4	2	4	0	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KRTAP5-5,NS,carcinoma,0,2	KRTAP5-5	NM_001001480	exon1	c.G181A	p.G61S	GGCTCCGGCTGCT	.	38	2	77	1	.	0	A	1651251	G	A	1651251	3	1	3	1	0	0	0	0	1	0	0	0	8603	1116	39	1	183	1	KRTAP5-5	11	1651251	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	557939	1651251	133355265	63	329											
SYT9	143425	hgsc.bcm.edu	37	chr11	7334708	7334708	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacaggaacagttgactGgaattggtagaattaaacca	19	8	9	5	0	0	2	0	1	0	1	0	4	0	4	1	3	3	2	1	3	8	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.,1	.	NM_175733	exon3	c.G580T	p.G194X	TTGACTGGAATTG	.	47	2	60	0	.	91	T	7334708	G	T	7334708	4	4	3	1	0	0	0	0	0	1	0	0	15538	1349	47	3	590	3	SYT9	11	7334708	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	5683457	7334708	127671808	64	330											
BACE1	23621	hgsc.bcm.edu	37	chr11	117186290	117186290	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acggtcatctccacgtagtaGccctgccccgacttgcccct	6	9	8	18	3	2	0	1	0	1	0	3	1	2	0	6	1	3	2	6	1	2	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	BACE1,right_upper_lobe,carcinoma,0,1	BACE1	NM_138972	exon1	c.C222A	p.G74G	GTAGTAGCCCTGC	.	56	3	84	0	.	0	T	117186290	G	T	117186290	2	4	3	1	0	0	0	0	0	0	0	1	1279	958	34	3		3	BACE1	11	117186290	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	109851582	117186290	17820226	65	331											
MCAM	4162	hgsc.bcm.edu	37	chr11	119181068	119181068	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctcctacctggtctccCggagccctcttgtcaccgct	3	10	8	20	3	3	0	1	0	2	0	5	1	4	1	7	2	2	1	7	2	1	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MCAM,caecum,carcinoma,0,1	MCAM	NM_006500	exon15	c.G1902A	p.P634P	GTCTCCCGGAGCC	.	42	2	54	0	.	0	T	119181068	C	T	119181068	2	4	3	1	0	0	0	0	0	0	0	1	9418	639	23	1		1	MCAM	11	119181068	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	1994778	119181068	15825448	66	332											
FAM118B	79607	hgsc.bcm.edu;bcgsc.ca	37	chr11	126131328	126131328	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcctctatttagcagggatgGtgagagaaggtcagctaaat	12	11	12	6	0	2	2	1	1	1	1	3	4	3	3	1	3	2	2	1	3	5	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024556	exon8	c.G991T	p.V331L	GGGATGGTGAGAG	.	69	4	81	0	.	.	T	126131328	G	T	126131328	3	4	3	1	0	0	0	0	1	0	0	0	5443	1261	44	3	1013	3	FAM118B	11	126131328	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	6950260	126131328	8875188	67	333											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	10	8	6	17	1	1	0	0	0	1	0	2	0	2	0	5	1	5	3	5	1	4	4	rs121913530	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KRAS_ENST00000256078,NS,adenocarcinoma,+1,6023	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC	.	45	9	56	0	.	+1	G	25398285	C	G	25398285	3	3	3	1	0	0	0	0	1	0	0	0	8481	594	21	5	672	5	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		25398285	108453610	68	334											
STAT6	6778	ucsc.edu;bcgsc.ca	37	chr12	57498569	57498569	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgttctccaagggcacagtGttgttgatgatttctccagt	7	15	10	9	0	2	2	0	2	2	0	4	2	2	2	2	1	0	4	2	1	1	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	STAT6	NM_001178079	exon10	c.C1029A	p.N343K	CACAGTGTTGTTG	.	12	4	25	0	.	69	T	57498569	G	T	57498569	3	4	3	1	0	0	0	0	1	0	0	0	15326	1368	48	3	1566	3	STAT6	12	57498569	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	32100284	57498569	76353326	69	335											
KDM2B	84678	hgsc.bcm.edu	37	chr12	121881589	121881589	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aaccgggggacgtttgaagcGatgaggcctaaaggggggtg	10	6	19	6	3	0	2	0	2	0	0	0	4	0	3	2	6	2	1	2	6	4	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KDM2B_ENST00000377071,rectum,carcinoma,0,2	KDM2B_ENST00000377071	NM_032590	exon17	c.C2459T	p.S820L	TGAAGCGATGAGG	.	24	2	44	0	.	0	A	121881589	G	A	121881589	3	1	3	1	0	0	0	0	1	0	0	0	8169	1059	37	1	1631	1	KDM2B	12	121881589	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	64383020	121881589	11970306	70	336											
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	131359125	131359125	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ataatgtttgatgtaacatcGagagttacttacaagaatgt	15	14	8	4	1	0	3	0	1	0	2	1	4	0	3	0	0	3	3	0	0	6	5	rs1802283	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RAN,NS,carcinoma,0,1	RAN	NM_006325	exon5	c.G282A	p.S94S	AACATCGAGAGTT	.	38	13	95	1	.	0	A	131359125	G	A	131359125	2	1	3	1	0	0	0	0	0	0	0	1	13076	1045	37	1		1	RAN	12	131359125	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	9477536	131359125	2492770	71	337											
TUBGCP3	10426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113200144	113200144	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctgtttttgtgtaggCgtggacagctgaggccagct	5	13	14	9	1	1	1	0	1	1	0	2	2	1	2	2	3	2	4	2	3	1	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TUBGCP3,NS,carcinoma,0,2	TUBGCP3	NM_006322	exon11	c.G1204A	p.A402T	TGTAGGCGTGGAC	.	29	4	48	0	.	0	T	113200144	C	T	113200144	3	4	3	1	0	0	0	0	1	0	0	0	16829	768	27	1	1567	1	TUBGCP3	13	113200144	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		113200144	1969734	72	338											
HAUS4	54930	hgsc.bcm.edu	37	chr14	23424312	23424312	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caagtggctactcttaccttGttgaagtatttccatccctt	8	16	6	11	0	1	1	0	1	1	0	3	1	3	1	3	1	2	3	3	1	5	7	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HAUS4,NS,carcinoma,0,1	HAUS4	NM_001166270	exon2	c.C52A	p.Q18K	TACCTTGTTGAAG	.	47	3	54	0	.	0	T	23424312	G	T	23424312	3	4	3	1	0	0	0	0	1	0	0	0	7009	1386	48	3	1075	3	HAUS4	14	23424312	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		23424312	83925228	73	339											
ARG2	384	ucsc.edu;bcgsc.ca	37	chr14	68114848	68114848	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acaggaactcctgttgtcggGggactaacctatcgagaagg	11	8	13	9	2	0	1	0	0	0	1	3	4	1	3	2	4	2	1	2	4	4	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ARG2	NM_001172	exon7	c.G807T	p.G269G	TGTCGGGGGACTA	.	43	4	53	0	.	20	T	68114848	G	T	68114848	2	4	3	1	0	0	0	0	0	0	0	1	855	1219	43	3		3	ARG2	14	68114848	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	44690536	68114848	39234692	74	340											
PTPN21	11099	broad.mit.edu;bcgsc.ca	37	chr14	88946343	88946343	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgtaggcgtacgagctgcCgatgttgaggtttcgcagcg	6	10	16	9	5	0	1	0	1	0	0	1	3	0	1	1	2	4	7	1	2	2	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PTPN21	NM_007039	exon13	c.G1432A	p.G478S	AGCTGCCGATGTT	.	13	4	21	0	.	113	T	88946343	C	T	88946343	3	4	3	1	0	0	0	0	1	0	0	0	12838	652	23	1	2120	1	PTPN21	14	88946343	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	20831495	88946343	18403197	75	341											
EML5	161436	hgsc.bcm.edu	37	chr14	89171303	89171303	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgttctttaagctgaGgtagatcttctttgtaaacc	9	16	8	8	0	3	2	0	1	3	1	3	2	3	2	1	1	3	5	1	1	4	7	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_183387	exon13	c.C1952A	p.P651H	AGCTGAGGTAGAT	.	60	4	79	0	.	.	T	89171303	G	T	89171303	3	4	3	1	0	0	0	0	1	0	0	0	5128	1000	35	3	4105	3	EML5	14	89171303	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	224960	89171303	18178237	76	342											
TTC8	123016	hgsc.bcm.edu	37	chr14	89338781	89338781	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgctggagatgcggaaGggccacgttgaacaggtcag	9	7	17	8	2	1	2	1	1	0	1	1	4	1	3	1	4	3	3	1	4	2	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TTC8,colon,carcinoma,0,1	TTC8	NM_144596	exon13	c.G1332T	p.K444N	GCGGAAGGGCCAC	.	44	2	77	0	.	0	T	89338781	G	T	89338781	3	4	3	1	0	0	0	0	1	0	0	0	16776	991	35	3	1382	3	TTC8	14	89338781	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	167478	89338781	18010759	77	343											
TRPM1	4308	bcgsc.ca	37	chr15	31355481	31355481	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacgagacccacgaggggcaCgccctgccccagtcctgcaa	9	3	11	18	3	0	1	0	0	0	1	1	3	1	1	5	2	2	2	5	2	1	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TRPM1	NM_001252020	exon7	c.G856A	p.V286M	GGGGCACGCCCTG	.	22	3	27	0	.	183	T	31355481	T	T	31355481	3	4	3	1	0	0	0	0	1	0	0	0	16646	536	19	1	4156	1	TRPM1	15	31355481	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		31355481	71175911	78	344											
CTDSPL2	51496	bcgsc.ca	37	chr15	44807020	44807020	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaagttactgaacatactaGaccctaaaaagcaactggtc	17	8	6	10	0	0	2	0	1	0	1	1	2	0	2	1	1	5	2	1	1	9	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CTDSPL2	NM_016396	exon10	c.G1090T	p.D364Y	ATACTAGACCCTA	.	45	4	102	0	.	31	T	44807020	T	T	44807020	3	4	3	1	0	0	0	0	1	0	0	0	4030	942	33	3	1124	3	CTDSPL2	15	44807020	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	13451539	44807020	57724372	79	345											
ISLR2	57611	ucsc.edu	37	chr15	74427081	74427081	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaagctacccggcaggcggCgaggcgggcggcgaggagcc	9	1	19	12	6	0	0	0	0	0	0	0	3	0	1	2	7	3	2	2	7	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ISLR2	NM_001130138	exon4	c.C1986T	p.G662G	AGGCGGCGAGGCG	.	34	4	88	0	.	78	T	74427081	C	T	74427081	2	4	3	1	0	0	0	0	0	0	0	1	7903	755	27	1		1	ISLR2	15	74427081	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	29620061	74427081	28104311	80	346											
CHD2	1106	broad.mit.edu	37	chr15	93552420	93552420	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggcactgaaacagctcGacaaacctgacaaggggctc	16	4	10	11	1	0	2	0	2	0	0	2	3	0	2	1	3	3	3	1	3	5	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CHD2	NM_001271	exon35	c.G4459T	p.D1487Y	CAGCTCGACAAAC	.	37	3	62	0	.	280	T	93552420	G	T	93552420	3	4	3	1	0	0	0	0	1	0	0	0	3347	1058	37	2	4597	2	CHD2	15	93552420	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	19125339	93552420	8978972	81	347											
IQCK	124152	hgsc.bcm.edu	37	chr16	19745076	19745076	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtgcagagcactattttccGgtttcccatttcaccatgat	9	14	7	11	1	1	2	1	1	0	1	3	2	3	2	3	1	2	3	3	1	1	5	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	IQCK,colon,carcinoma,0,1	IQCK	NM_153208	exon4	c.G303T	p.P101P	TTTTCCGGTTTCC	.	52	3	88	0	.	0	T	19745076	G	T	19745076	2	4	3	1	0	0	0	0	0	0	0	1	7857	1103	39	2		2	IQCK	16	19745076	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		19745076	70609677	82	348											
WWOX	51741	hgsc.bcm.edu	37	chr16	78420808	78420808	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acctcgctctgctccgtagcGtgcagcattttgctgaagca	7	11	10	13	3	1	1	0	1	1	0	3	1	2	1	2	0	6	7	2	0	2	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	WWOX_ENST00000408984,NS,carcinoma,0,3	WWOX_ENST00000408984	NM_016373	exon6	c.G568T	p.V190L	CGTAGCGTGCAGC	.	28	2	32	0	.	0	T	78420808	G	T	78420808	3	4	3	1	0	0	0	0	1	0	0	0	17474	1145	40	2	652	2	WWOX	16	78420808	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	58675732	78420808	11933945	83	349											
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu	37	chr17	7232439	7232439	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttaaactcctggcccggctGctgccgccgcgccgtacgcc	4	7	12	18	6	0	0	0	0	0	0	1	0	1	0	6	2	4	4	6	2	3	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001005408	exon1	c.C193T	p.Q65X	CCGGCTGCTGCCG	.	10	5	25	0	.	.	A	7232439	G	A	7232439	4	1	3	1	0	0	0	0	0	1	0	0	10394	1328	46	3	4611	3	NEURL4	17	7232439	Nonsense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		7232439	73962771	84	350											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatggtgaggatgggcctccGgttcatgccgcccatgcagg	6	8	16	11	2	1	1	1	1	0	0	2	3	2	2	4	5	2	2	4	5	0	1	rs121912651	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TP53_ENST00000545858,NS,adenocarcinoma,+1,704	TP53_ENST00000545858	NM_000546	exon7	c.C742T	p.R248W	GCCTCCGGTTCAT	.	10	5	48	0	.	+1	A	7577539	G	A	7577539	3	1	3	1	0	0	0	0	1	0	0	0	16442	1115	39	1	548	1	TP53	17	7577539	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	345100	7577539	73617671	85	351											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28268848	28268848	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	catctcaagaggaactcagaCctgctcaggttcttgtccta	10	11	8	12	0	4	2	3	0	2	2	6	3	5	3	2	2	2	2	2	2	3	3	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_198529	exon1	c.C34A	p.P12T	CTCAGACCTGCTC	.	30	7	55	0	.	.	A	28268848	C	A	28268848	3	1	3	1	0	0	0	0	1	0	0	0	4964	507	18	3	36	3	EFCAB5	17	28268848	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	20691309	28268848	52926362	86	352											
FAM20A	54757	bcgsc.ca	37	chr17	66538202	66538202	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gggggccaggttgagggacgGcaggaaggcagagagggaac	11	2	22	6	1	0	2	0	1	0	1	0	6	0	5	1	8	1	3	1	8	2	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	FAM20A	NM_017565	exon7	c.C1033A	p.P345T	GGGACGGCAGGAA	.	24	3	56	0	.	35	T	66538202	T	T	66538202	3	4	3	1	0	0	0	0	1	0	0	0	5569	1203	42	3	612	3	FAM20A	17	66538202	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	38269354	66538202	14657008	87	353											
RPTOR	57521	bcgsc.ca	37	chr17	78811735	78811735	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tccgcaggcaagcctgggacCtggctgttgacatctgtctg	6	10	13	12	1	2	1	0	1	2	0	3	2	3	2	3	3	1	4	3	3	1	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	RPTOR	NM_001163034	exon10	c.C1150A	p.L384M	TGGGACCTGGCTG	.	22	3	37	0	.	122	A	78811735	A	A	78811735	3	1	3	1	0	0	0	0	1	0	0	0	13717	680	24	3	1188	3	RPTOR	17	78811735	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	12273533	78811735	2383475	88	354											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	63511084	63511084	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaacaagttacacgctaCggatagaagctgcaaataaa	19	6	7	9	2	0	1	0	0	0	1	0	2	0	2	1	1	5	4	1	1	10	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_004361	exon7	c.C1018T	p.R340W	ACGCTACGGATAG	.	43	16	60	0	.	.	T	63511084	C	T	63511084	3	4	3	1	0	0	0	0	1	0	0	0	3137	527	19	1	1040	1	CDH7	18	63511084	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		63511084	14566164	89	355											
PLIN4	729359	broad.mit.edu	37	chr19	4510665	4510665	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggcttcccaggcaggctccgGgcctacactgagcacatccg	7	6	12	16	2	0	1	0	1	0	0	3	1	3	1	4	4	2	4	4	4	1	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PLIN4	NM_001080400	exon3	c.C3265A	p.P1089T	GCTCCGGGCCTAC	.	38	3	76	0	.	191	T	4510665	G	T	4510665	3	4	3	1	0	0	0	0	1	0	0	0	12140	1232	43	3	824	3	PLIN4	19	4510665	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		4510665	54618318	90	356											
KDM4B	23030	bcgsc.ca	37	chr19	5041222	5041222	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacctcacctttgtctcccCgatctacggggctgacatca	8	10	8	15	2	4	1	2	1	2	0	5	3	4	1	4	2	2	1	4	2	2	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KDM4B_ENST00000381759,NS,carcinoma,0,2	KDM4B	NM_015015	exon5	c.C392A	p.P131Q	TCTCCCCGATCTA	.	43	4	43	0	.	120	A	5041222	A	A	5041222	3	1	3	1	0	0	0	0	1	0	0	0	8173	652	23	2	402	2	KDM4B	19	5041222	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	530557	5041222	54087761	91	357											
NOTCH3	4854	hgsc.bcm.edu	37	chr19	15272347	15272347	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cgtggggaccgggggggctgCggggcccactgggttgatcc	3	6	21	11	3	0	1	0	1	0	0	1	2	1	2	3	8	1	2	3	8	0	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	NOTCH3_ENST00000263388,NS,carcinoma,0,2	NOTCH3_ENST00000263388	NM_000435	exon33	c.G6092A	p.R2031H	GGGCTGCGGGGCC	.	15	2	16	0	.	0	T	15272347	C	T	15272347	3	4	3	1	0	0	0	0	1	0	0	0	10597	768	27	1	877	1	NOTCH3	19	15272347	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	10231125	15272347	43856636	92	358											
JAK3	3718	hgsc.bcm.edu	37	chr19	17951082	17951082	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctgtcaaagtcctgggggCtgcggcggagaacataggag	10	6	17	8	2	1	1	1	0	0	1	2	3	2	2	1	5	3	2	1	5	3	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	JAK3_ENST00000458235,colon,carcinoma,0,2	JAK3_ENST00000458235	NM_000215	exon9	c.G1211A	p.S404N	TGGGGGCTGCGGC	.	24	2	28	0	.	0	T	17951082	C	T	17951082	3	4	3	1	0	0	0	0	1	0	0	0	7983	797	28	3	2227	3	JAK3	19	17951082	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	2678735	17951082	41177901	93	359											
ZNF208	7757	bcgsc.ca	37	chr19	22154193	22154193	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagtatgaattttcttgtGatatctaagggttgagggcc	9	15	11	6	0	2	3	0	3	2	0	3	3	3	3	2	2	0	2	2	2	4	7	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZNF208_ENST00000428290,NS,carcinoma,+2,3	ZNF208	NM_007153	exon4	c.C3643A	p.H1215N	TCTTGTGATATCT	.	29	3	46	0	.	817	T	22154193	T	T	22154193	3	4	3	1	0	0	0	0	1	0	0	0	17824	1290	45	3	203	3	ZNF208	19	22154193	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	4203111	22154193	36974790	94	360											
CYP2A6	1548	ucsc.edu	37	chr19	41355849	41355849	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cacgacccgccggggccccaAgtgaatggtgaacacggggc	9	3	15	14	4	0	2	0	2	0	0	0	3	0	2	4	5	1	0	4	5	3	0	rs2302990	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CYP2A6	NM_000762	exon2	c.T217C	p.L73L	GCCCCAAGTGAAT	.	52	8	64	5	.	69	G	41355849	A	G	41355849	2	3	3	1	0	0	0	0	0	0	0	1	4185	69	3	4		4	CYP2A6	19	41355849	Silent	SNP	A	TCGA-3X-AAVB-01A-31D-A417-09	19201656	41355849	17773134	95	361											
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42222257	42222257	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctgccaggccaataactcagCcagtggccacagcaggacta	12	5	10	14	0	1	0	1	0	0	0	1	1	1	1	4	3	4	1	4	3	3	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_004363	exon6	c.C1448T	p.A483V	ACTCAGCCAGTGG	.	33	4	59	0	.	.	T	42222257	C	T	42222257	3	4	3	1	0	0	0	0	1	0	0	0	3217	739	26	3	1470	3	CEACAM5	19	42222257	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	866408	42222257	16906726	96	362											
AP2A1	160	hgsc.bcm.edu	37	chr19	50303257	50303257	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccatcctggccgagaagtaCgccgtggactacagctggta	9	7	13	12	3	0	1	0	0	0	1	1	3	1	2	4	3	3	3	4	3	4	3	rs201906388		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	AP2A1,colon,carcinoma,0,1	AP2A1	NM_130787	exon11	c.C1305T	p.Y435Y	GAAGTACGCCGTG	.	41	2	62	0	0.002	0	T	50303257	C	T	50303257	2	4	3	1	0	0	0	0	0	0	0	1	735	547	19	1		1	AP2A1	19	50303257	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	8081000	50303257	8825726	97	363											
MYBL2	4605	hgsc.bcm.edu	37	chr20	42315650	42315650	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaccgcatcatCtgcgaggcccacaaggtgct	10	5	15	11	2	2	0	1	0	1	0	2	5	2	3	2	5	2	2	2	5	1	0	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MYBL2,NS,carcinoma,0,1	MYBL2	NM_002466	exon5	c.C438A	p.I146I	CATCATCTGCGAG	.	40	2	59	0	.	0	A	42315650	C	A	42315650	2	1	3	1	0	0	0	0	0	0	0	1	10058	903	32	3		3	MYBL2	20	42315650	Silent	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09		42315650	20709870	98	364											
ZNF334	55713	hgsc.bcm.edu	37	chr20	45130856	45130856	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccttacattcatttggcttCtctcctctgtgagttctttg	4	20	6	11	0	4	1	1	1	3	0	7	1	6	1	2	1	1	2	2	1	1	6	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZNF334,NS,carcinoma,0,1	ZNF334	NM_018102	exon5	c.G1122T	p.E374D	TGGCTTCTCTCCT	.	38	2	51	0	.	0	A	45130856	C	A	45130856	3	1	3	1	0	0	0	0	1	0	0	0	17908	912	32	3	924	3	ZNF334	20	45130856	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	2815206	45130856	17894664	99	365											
SLC25A17	10478	hgsc.bcm.edu	37	chr22	41173096	41173096	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaccgtggtggcaatcGctttggctactgcaccaatg	8	10	12	11	2	1	0	1	0	0	0	2	0	1	0	2	4	2	4	2	4	3	2	rs371543259		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SLC25A17,caecum,carcinoma,0,1	SLC25A17	NM_006358	exon7	c.C641T	p.A214V	GCAATCGCTTTGG	.	40	2	41	0	.	0	A	41173096	G	A	41173096	3	1	3	1	0	0	0	0	1	0	0	0	14534	1087	38	1	294	1	SLC25A17	22	41173096	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		41173096	10131470	100	366											
SULT4A1	25830	broad.mit.edu	37	chr22	44229568	44229568	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agcacgttcgagtccatgcgGtgctcccagaactcctgcac	8	8	10	15	3	0	1	0	0	0	1	4	2	3	1	3	1	5	4	3	1	1	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	SULT4A1	NM_014351	exon5	c.C555A	p.H185Q	CATGCGGTGCTCC	.	17	3	40	0	.	26	T	44229568	G	T	44229568	3	4	3	1	0	0	0	0	1	0	0	0	15439	1252	44	3	311	3	SULT4A1	22	44229568	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	3056472	44229568	7074998	101	367											
PTCHD1	139411	hgsc.bcm.edu;bcgsc.ca	37	chrX	23411591	23411591	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaatgtttttggtggccaaGaccatggaaacaaacagaga	16	8	11	6	0	0	3	0	0	0	3	0	5	0	4	2	3	2	1	2	3	4	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_173495	exon3	c.G1956T	p.K652N	GGCCAAGACCATG	.	75	4	114	0	.	.	T	23411591	G	T	23411591	3	4	3	1	0	0	0	0	1	0	0	0	12781	933	33	3	1966	3	PTCHD1	23	23411591	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09		23411591	131858969	102	368											
GAGE12J	729396	broad.mit.edu	37	chrX	49179682	49179682	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtgaaatatgagttggCgaggaagatcgacctattat	13	11	12	5	2	0	3	0	2	0	1	1	6	0	4	1	2	0	1	1	2	5	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	GAGE12J	NM_001098406	exon2	c.C10T	p.R4X	AGTTGGCGAGGAA	.	597	8	888	0	.	6	T	49179682	C	T	49179682	4	4	3	1	0	0	0	0	0	1	0	0	6225	760	27	1	12	1	GAGE12J	23	49179682	Nonsense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	25768091	49179682	106090878	103	369											
STAG2	10735	hgsc.bcm.edu	37	chrX	123220534	123220534	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtcattagtggaatcaGcagccgggggtcaacagtac	11	8	13	9	1	4	0	4	0	0	0	4	1	4	1	1	3	4	2	1	3	4	2	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001042749	exon30	c.G3191A	p.S1064N	GAATCAGCAGCCG	.	80	4	92	0	.	.	A	123220534	G	A	123220534	3	1	3	1	0	0	0	0	1	0	0	0	15299	971	34	3	3301	3	STAG2	23	123220534	Missense_Mutation	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	74040852	123220534	32050026	104	370											
ELF4	2000	bcgsc.ca	37	chrX	129205393	129205393	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cggttgcccttggtcttccgGactatgagggaaaggtgagt	7	11	15	8	2	1	2	0	2	1	0	2	4	2	4	2	5	1	1	2	5	2	4	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ELF4	NM_001421	exon6	c.C534A	p.I178I	CTTCCGGACTATG	.	8	3	19	0	.	67	T	129205393	T	T	129205393	2	4	3	1	0	0	0	0	0	0	0	1	5084	1188	41	3		3	ELF4	23	129205393	Silent	SNP	G	TCGA-3X-AAVB-01A-31D-A417-09	5984859	129205393	26065167	105	371											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	135593803	135593803	+	Frame_Shift_Del	DEL	A	A	-																															aaggaagaagaggaggatacAtatgaaaaagtatttgatga																								novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001163280	exon10	c.1898delC	p.T633fs	GGATACATATGAA	.	65	17	118	0	.	.	-	135593803	A	-	135593803	7	5	3	1	0	1	0	1	0	0	0	0	7477	204	8	0	1933	0	HTATSF1	23	135593803	Frame_Shift_Del	DEL	A	TCGA-3X-AAVB-01A-31D-A417-09	6388410	135593803	19676757	106	372											
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153595859	153595859	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggaactgggacaggtaggtCatgacagagtgctcgtccac	10	7	15	9	1	1	2	1	1	0	1	3	4	2	4	1	4	2	2	1	4	2	1	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001456	exon5	c.G774T	p.M258I	GTAGGTCATGACA	.	87	22	114	0	.	.	A	153595859	C	A	153595859	3	1	3	1	0	0	0	0	1	0	0	0	5966	826	29	3	7345	3	FLNA	23	153595859	Missense_Mutation	SNP	C	TCGA-3X-AAVB-01A-31D-A417-09	18002056	153595859	1674701	107	373											
CLSTN1	22883	broad.mit.edu;bcgsc.ca	37	chr1	9811620	9811620	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gggagcagtcggcatccacgGcctccaccctcaaaatgctg	9	6	11	15	2	1	0	1	0	0	0	4	1	3	1	4	3	2	3	4	3	2	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	CLSTN1	NM_001009566	exon5	c.C560T	p.A187V	TCCACGGCCTCCA	.	28	3	52	0	.	88	A	9811620	G	A	9811620	3	1	4	1	0	0	0	0	1	0	0	0	3584	1203	42	3	2445	3	CLSTN1	1	9811620	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		9811620	239439001	1	374											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10434992	10434992	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaacattttgttgtcgtccGtcggccttatgtcttcatct	6	18	7	10	3	3	0	1	0	2	0	6	0	4	0	2	1	1	1	2	1	3	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015074	exon45	c.G5039A	p.R1680H	TCGTCCGTCGGCC	.	53	27	63	0	.	.	A	10434992	G	A	10434992	3	1	4	1	0	0	0	0	1	0	0	0	8326	1145	40	1	6702	1	KIF1B	1	10434992	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	623372	10434992	238815629	2	375											
ABCA4	24	ucsc.edu;bcgsc.ca	37	chr1	94486813	94486813	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tacactgtaatctctgagagCtgctccttggtcaggttcag	8	13	10	10	0	3	1	2	1	1	1	5	2	4	1	1	2	3	4	1	2	2	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ABCA4	NM_000350	exon35	c.G5001A	p.Q1667Q	TGAGAGCTGCTCC	.	24	4	44	0	.	275	T	94486813	C	T	94486813	2	4	4	1	0	0	0	0	0	0	0	1	34	796	28	3		3	ABCA4	1	94486813	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	84051821	94486813	154763808	3	376											
MOV10	4343	hgsc.bcm.edu	37	chr1	113241378	113241378	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atcaccaaacttgacagggaGcttcgaggactggatgacat	13	8	11	9	1	1	2	1	2	0	0	2	6	1	5	1	3	2	1	1	3	1	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020963	exon17	c.G2550T	p.E850D	CAGGGAGCTTCGA	.	24	3	27	0	.	.	T	113241378	G	T	113241378	3	4	4	1	0	0	0	0	1	0	0	0	9767	962	34	3	2612	3	MOV10	1	113241378	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	18754565	113241378	136009243	4	377											
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccagtctgccgacaggTgcctccattgacacaaggtg	9	8	11	13	1	2	1	1	1	1	0	3	2	3	1	4	2	2	0	4	2	1	1	rs200464440	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NOTCH2_ENST00000369342,NS,carcinoma,0,2	NOTCH2_ENST00000369342	NM_001200001	exon4	c.A703T	p.T235S	GACAGGTGCCTCC	.	25	3	32	0	.	0	A	120539668	T	A	120539668	3	1	4	1	0	0	0	0	1	0	0	0	10595	1696	59	5	6836	5	NOTCH2	1	120539668	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	7298290	120539668	128710953	5	378											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152191793	152191793	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	ggctaggagagtggccagatCcagacccttgtcggccgtgg	7	7	16	11	2	0	3	0	0	0	3	2	4	1	3	4	5	0	1	4	5	1	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001009931	exon3	c.G2312C	p.G771A	CCAGATCCAGACC	.	55	27	41	0	.	.	G	152191793	C	G	152191793	3	3	4	1	0	0	0	0	1	0	0	0	7400	855	30	5	6244	5	HRNR	1	152191793	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	31652125	152191793	97058828	6	379											
LCE4A	199834	hgsc.bcm.edu	37	chr1	152681695	152681696	+	Missense_Mutation	DNP	TG	TG	CT																															ggctccagctctgggggctgTggttgctgcagctctgaggg																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_178356	exon1	c.G145T	p.G49C	GGCTGTGGTTGCT	.	34	7	33	0	.	.	CT	152681696	TG	CT	152681695	3	2	4	1	0	0	0	0	1	0	0	0	8713	1702	59	4	146	4	LCE4A	1	152681695	Missense_Mutation	DNP	TG	TCGA-3X-AAVC-01A-21D-A417-09	489902	152681695	96568926	7	380											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu	37	chr1	156106775	156106775	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgatcccttgctgacttacCggttcccaccaaagttcacc	9	11	6	15	1	1	2	1	2	0	0	3	2	3	2	5	1	2	3	5	1	2	4	rs57920071	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LMNA,NS,carcinoma,0,1	LMNA	NM_170707	exon8	c.C1444T	p.R482W	ACTTACCGGTTCC	.	52	3	35	0	.	0	T	156106775	C	T	156106775	3	4	4	1	0	0	0	0	1	0	0	0	8889	643	23	1	1474	1	LMNA	1	156106775	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	3425080	156106775	93143846	8	381											
PRCC	5546	hgsc.bcm.edu;bcgsc.ca	37	chr1	156756845	156756845	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cgatgcagccaatgccccccTtgaattcaagatggcagcag	11	7	10	13	1	1	2	1	1	0	1	1	3	1	2	4	1	4	3	4	1	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_005973	exon3	c.T962A	p.L321H	CCCCCCTTGAATT	.	65	4	36	0	.	.	A	156756845	T	A	156756845	3	1	4	1	0	0	0	0	1	0	0	0	12499	1609	56	5	972	5	PRCC	1	156756845	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	650070	156756845	92493776	9	382											
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161130441	161130441	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggtgtccacaatgccccaggCctctgagcaccgcctgggcc	6	6	12	17	1	1	1	0	1	1	0	2	1	2	1	7	3	2	1	7	3	1	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_012475	exon2	c.C11T	p.A4V	CCCAGGCCTCTGA	.	43	15	28	0	.	.	T	161130441	C	T	161130441	3	4	4	1	0	0	0	0	1	0	0	0	17113	739	26	3	13	3	USP21	1	161130441	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	4373596	161130441	88120180	10	383											
FCGR3B	2215	hgsc.bcm.edu	37	chr1	161595956	161595956	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtgatggtgatgttcaCagtctctgaagacacatttt	10	15	10	6	0	2	5	1	4	1	1	3	5	2	5	0	1	0	1	0	1	1	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001244753	exon4	c.G664A	p.V222M	TGTTCACAGTCTC	.	79	4	75	0	.	.	T	161595956	C	T	161595956	3	4	4	1	0	0	0	0	1	0	0	0	5818	478	17	3	153	3	FCGR3B	1	161595956	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	465515	161595956	87654665	11	384											
RXRG	6258	hgsc.bcm.edu;bcgsc.ca	37	chr1	165414094	165414094	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atacttacctccatagcctgCgggaaacttcatgaagtgag	12	10	9	10	1	1	2	1	2	0	0	2	3	2	3	3	1	5	0	3	1	5	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006917	exon1	c.G37A	p.A13T	AGCCTGCGGGAAA	.	77	4	84	0	.	.	T	165414094	C	T	165414094	3	4	4	1	0	0	0	0	1	0	0	0	13817	768	27	1	1451	1	RXRG	1	165414094	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	3818138	165414094	83836527	12	385											
APOBEC4	403314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	183617622	183617622	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagataaccattcatttcaaAgagcattgattctggatgga	15	12	8	6	0	3	3	2	1	1	2	3	5	3	5	1	2	2	1	1	2	3	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_203454	exon2	c.T295A	p.F99I	TTTCAAAGAGCAT	.	39	5	37	0	.	.	T	183617622	A	T	183617622	3	4	4	1	0	0	0	0	1	0	0	0	793	72	3	5	812	5	APOBEC4	1	183617622	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	18203528	183617622	65632999	13	386											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	201618049	201618049	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgggccgcccgcctccaacCtgcgcaagcagaagtcactc	8	4	11	18	4	1	1	1	0	0	1	3	1	2	1	5	1	3	2	5	1	3	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020443	exon1	c.C253G	p.L85V	TCCAACCTGCGCA	.	36	12	45	0	.	.	G	201618049	C	G	201618049	3	3	4	1	0	0	0	0	1	0	0	0	10231	680	24	5	255	5	NAV1	1	201618049	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	18000427	201618049	47632572	14	387											
CR2	1380	hgsc.bcm.edu	37	chr1	207643300	207643300	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atccccagatcctaagaggcCgaatggtatctgggcagaaa	13	7	11	10	1	1	3	0	0	1	3	3	4	3	3	4	3	0	2	4	3	4	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CR2,NS,carcinoma,0,1	CR2	NM_001006658	exon6	c.C1078A	p.R360R	AGAGGCCGAATGG	.	67	3	62	0	.	0	A	207643300	C	A	207643300	2	1	4	1	0	0	0	0	0	0	0	1	3865	644	23	2		2	CR2	1	207643300	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	6025251	207643300	41607321	15	388											
FAM71A	149647	hgsc.bcm.edu	37	chr1	212798867	212798867	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaggaaagggggatcaGgaccaggtcagcatccaaag	14	5	13	9	0	3	0	3	0	0	0	4	3	4	3	2	5	1	1	2	5	3	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_153606	exon1	c.G648T	p.Q216H	GGATCAGGACCAG	.	38	4	40	0	.	.	T	212798867	G	T	212798867	3	4	4	1	0	0	0	0	1	0	0	0	5642	991	35	3	650	3	FAM71A	1	212798867	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	5155567	212798867	36451754	16	389											
CHRM3	1131	hgsc.bcm.edu	37	chr1	240070932	240070932	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gtaccaccgatgaccctctgGgaggtcataccgtctggcaa	9	8	11	13	2	3	1	1	1	2	0	3	3	3	2	4	3	2	2	4	3	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CHRM3,NS,carcinoma,0,1	CHRM3	NM_000740	exon5	c.G181A	p.G61R	CCTCTGGGAGGTC	.	40	2	31	0	.	0	A	240070932	G	A	240070932	3	1	4	1	0	0	0	0	1	0	0	0	3400	1233	43	3	183	3	CHRM3	1	240070932	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	27272065	240070932	9179689	17	390											
CAD	790	hgsc.bcm.edu	37	chr2	27464966	27464966	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgccgacgtcgtcgtgctccGgcacccccagcctggagcag	5	6	13	17	5	0	0	0	0	0	0	3	2	1	1	5	2	4	3	5	2	0	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CAD,colon,carcinoma,0,1	CAD	NM_004341	exon39	c.G6071T	p.R2024L	TGCTCCGGCACCC	.	19	2	19	0	.	0	T	27464966	G	T	27464966	3	4	4	1	0	0	0	0	1	0	0	0	2583	1116	39	2	6225	2	CAD	2	27464966	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		27464966	215734407	18	391											
HAAO	23498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	43010487	43010487	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gctcggtctccagccgccttCgctcaaccaccagccccacg	6	6	8	21	4	2	0	1	0	1	0	5	0	2	0	7	1	3	2	7	1	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HAAO	NM_012205	exon4	c.G317A	p.R106Q	CGCCTTCGCTCAA	.	28	9	30	1	.	26	T	43010487	C	T	43010487	3	4	4	1	0	0	0	0	1	0	0	0	6978	884	31	1	571	1	HAAO	2	43010487	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	15545521	43010487	200188886	19	392											
B3GNT2	10678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62449365	62449365	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agatatgagaaatgagtgttGgacgtcgaagaataaagttg	16	10	13	2	2	0	4	0	2	0	3	1	7	0	5	0	1	0	2	0	1	6	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006577	exon2	c.G10C	p.G4R	AGTGTTGGACGTC	.	34	12	35	0	.	.	C	62449365	G	C	62449365	3	2	4	1	0	0	0	0	1	0	0	0	1255	1349	47	5	12	5	B3GNT2	2	62449365	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	19438878	62449365	180750008	20	393											
TSGA10	80705	hgsc.bcm.edu	37	chr2	99636892	99636892	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagattctctcatttgccatCtgactcctcaggagttcaat	9	14	7	11	0	5	2	3	1	2	1	7	4	6	3	2	1	1	1	2	1	1	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TSGA10,NS,carcinoma,0,1	TSGA10	NM_182911	exon17	c.G1668T	p.Q556H	TGCCATCTGACTC	.	26	2	17	0	.	0	A	99636892	C	A	99636892	3	1	4	1	0	0	0	0	1	0	0	0	16678	912	32	3	444	3	TSGA10	2	99636892	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	37187527	99636892	143562481	21	394											
CCDC138	165055	hgsc.bcm.edu	37	chr2	109463227	109463227	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	catcaacattgaggagattgGgtgaagacatttttaaagga	15	11	11	4	0	1	4	1	2	0	2	1	6	1	5	0	3	1	0	0	3	4	5	rs145643143		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_144978	exon12	c.G1357A	p.G453S	AGATTGGGTGAAG	.	44	4	44	0	0.000	.	A	109463227	G	A	109463227	3	1	4	1	0	0	0	0	1	0	0	0	2790	1232	43	3	1403	3	CCDC138	2	109463227	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	9826335	109463227	133736146	22	395											
BIN1	274	broad.mit.edu;bcgsc.ca	37	chr2	127811543	127811543	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgggagggggtcaaagtccaGgtccagcagactggcctgct	8	6	16	11	1	1	1	1	0	0	1	3	2	3	2	3	5	2	2	3	5	1	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	BIN1	NM_139343	exon13	c.C1177A	p.L393M	AGTCCAGGTCCAG	.	57	27	84	2	.	85	T	127811543	G	T	127811543	3	4	4	1	0	0	0	0	1	0	0	0	1431	991	35	3	632	3	BIN1	2	127811543	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	18348316	127811543	115387830	23	396											
LRP1B	53353	hgsc.bcm.edu	37	chr2	141004670	141004670	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cttacttgtgctgatatgatCagacttgctgctctttgggg	6	16	11	8	0	2	3	1	2	1	1	2	3	2	3	0	2	4	3	0	2	2	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LRP1B,NS,carcinoma,+2,1	LRP1B	NM_018557	exon87	c.G13309C	p.D4437H	TATGATCAGACTT	.	42	2	48	0	.	+2	G	141004670	C	G	141004670	3	3	4	1	0	0	0	0	1	0	0	0	9000	826	29	5	510	5	LRP1B	2	141004670	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	13193127	141004670	102194703	24	397											
KCNH7	90134	hgsc.bcm.edu	37	chr2	163279884	163279884	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attggtgtaagtccatgcgtGctggaaatattcttcaagac	11	13	10	7	1	2	1	1	0	1	1	3	2	3	2	1	2	2	2	1	2	4	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_033272	exon9	c.C2116T	p.H706Y	ATGCGTGCTGGAA	.	85	4	63	0	.	.	A	163279884	G	A	163279884	3	1	4	1	0	0	0	0	1	0	0	0	8081	1319	46	3	1572	3	KCNH7	2	163279884	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	22275214	163279884	79919489	25	398											
ITGA4	3676	hgsc.bcm.edu;bcgsc.ca	37	chr2	182359521	182359521	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatcaggacaaattgatgcaGataataatggctatgtaggt	15	12	10	4	0	1	2	1	1	0	1	1	3	1	3	0	3	1	3	0	3	6	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000885	exon12	c.G1321T	p.D441Y	GATGCAGATAATA	.	69	4	58	0	.	.	T	182359521	G	T	182359521	3	4	4	1	0	0	0	0	1	0	0	0	7922	942	33	3	1367	3	ITGA4	2	182359521	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	19079637	182359521	60839852	26	399											
CPS1	1373	hgsc.bcm.edu	37	chr2	211460258	211460258	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtctgtccattggtcaGgctggagaatttgattactc	8	13	13	7	0	2	2	1	1	1	1	4	4	3	3	1	5	1	1	1	5	2	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CPS1_ENST00000430249,NS,carcinoma,0,3	CPS1_ENST00000430249	NM_001122633	exon14	c.G1329A	p.Q443Q	TGGTCAGGCTGGA	.	45	2	80	0	.	0	A	211460258	G	A	211460258	2	1	4	1	0	0	0	0	0	0	0	1	3846	991	35	3		3	CPS1	2	211460258	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	29100737	211460258	31739115	27	400											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238296453	238296453	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctaccaccccgtagcgaaTctcgtcactagaaggcccgg	9	7	10	15	4	2	1	1	0	1	1	3	2	2	1	4	2	3	2	4	2	5	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004369	exon4	c.A1084G	p.I362V	AGCGAATCTCGTC	.	29	15	20	0	.	.	C	238296453	T	C	238296453	3	2	4	1	0	0	0	0	1	0	0	0	3724	1435	50	4	8660	4	COL6A3	2	238296453	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	26836195	238296453	4902920	28	401											
SATB1	6304	broad.mit.edu	37	chr3	18391133	18391135	+	In_Frame_Del	DEL	CTG	CTG	-																															ggctgtggaggcggcggtgcCtgctgctgctgctgctgctg																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SATB1	NM_001195470	exon12	c.1915_1917del	p.639_639del	CGGTGCCTGCTGC	.	6	2	14	0	.	96	-	18391135	CTG	-	18391133	7	5	4	1	0	1	0	1	0	0	0	0	13906	680	24	0	474	0	SATB1	3	18391133	In_Frame_Del	DEL	CTG	TCGA-3X-AAVC-01A-21D-A417-09		18391133	179631297	29	402											
ZCWPW2	152098	hgsc.bcm.edu	37	chr3	28562602	28562602	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaggaaataaatatgggaGaaaaggtaatattgatagtt	19	10	12	0	0	0	3	0	1	0	2	0	6	0	4	0	3	0	2	0	3	9	7	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZCWPW2,caecum,carcinoma,0,1	ZCWPW2	NM_001040432	exon8	c.G904T	p.E302X	ATGGGAGAAAAGG	.	39	2	61	0	.	0	T	28562602	G	T	28562602	4	4	4	1	0	0	0	0	0	1	0	0	17656	943	33	3	930	3	ZCWPW2	3	28562602	Nonsense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	10171469	28562602	169459828	30	403											
MLH1	4292	broad.mit.edu	37	chr3	37067150	37067150	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttgctaccaggacttgctgGcccctctggggagatggtta	6	12	13	10	0	1	1	0	0	1	1	1	3	1	2	3	5	3	3	3	5	2	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MLH1	NM_000249	exon12	c.G1061T	p.G354V	TTGCTGGCCCCTC	.	27	3	38	0	.	226	T	37067150	G	T	37067150	3	4	4	1	0	0	0	0	1	0	0	0	9665	1203	42	3	1107	3	MLH1	3	37067150	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	8504548	37067150	160955280	31	404											
DLEC1	9940	hgsc.bcm.edu	37	chr3	38135138	38135138	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggatctgatctatatttctgGtgaaaaaagccagccagacc	13	10	9	9	0	3	3	0	2	3	1	3	4	3	4	3	2	2	0	3	2	5	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	DLEC1_ENST00000346219,NS,carcinoma,-1,2	DLEC1_ENST00000346219	NM_007337	exon12	c.G1799T	p.G600V	TTTCTGGTGAAAA	.	40	2	73	0	.	-1	T	38135138	G	T	38135138	3	4	4	1	0	0	0	0	1	0	0	0	4580	1261	44	3	1845	3	DLEC1	3	38135138	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	1067988	38135138	159887292	32	405											
TTC21A	199223	hgsc.bcm.edu	37	chr3	39154059	39154059	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gacaccaaagatgtgctgggGctgatgggaaaggtgggcag	11	6	18	6	0	0	2	0	1	0	1	0	4	0	3	1	5	1	3	1	5	2	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TTC21A,NS,carcinoma,0,1	TTC21A	NM_145755	exon5	c.G546T	p.G182G	GCTGGGGCTGATG	.	30	2	30	0	.	0	T	39154059	G	T	39154059	2	4	4	1	0	0	0	0	0	0	0	1	16749	1190	42	3		3	TTC21A	3	39154059	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	1018921	39154059	158868371	33	406											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52510551	52510551	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgactgccgtcatccccaCttggcaggcattgaccacgc	7	9	10	15	2	1	2	1	2	0	0	2	2	2	2	4	2	1	2	4	2	0	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001276293	exon8	c.C854T	p.T285I	TCCCCACTTGGCA	.	8	7	28	0	.	.	T	52510551	C	T	52510551	3	4	4	1	0	0	0	0	1	0	0	0	10479	565	20	3	884	3	NISCH	3	52510551	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	13356492	52510551	145511879	34	407											
NT5DC2	64943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52561903	52561903	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttcccatgggccaccaggcGgctcaggacagcaaacgtct	9	7	11	14	2	2	0	1	0	1	0	3	1	3	1	3	4	2	2	3	4	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001134231	exon8	c.C877T	p.R293C	CCAGGCGGCTCAG	.	16	4	38	0	.	.	A	52561903	G	A	52561903	3	1	4	1	0	0	0	0	1	0	0	0	10739	1116	39	1	824	1	NT5DC2	3	52561903	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	51352	52561903	145460527	35	408											
ARHGEF3	50650	bcgsc.ca	37	chr3	56807804	56807804	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaggtttgctagcgacGtgactcgggaaaggggtttg	8	10	18	5	3	0	2	0	2	0	0	1	5	0	4	0	5	2	3	0	5	2	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ARHGEF3	NM_001128615	exon5	c.C233T	p.T78M	AGCGACGTGACTC	.	47	4	85	0	.	128	A	56807804	A	A	56807804	3	1	4	1	0	0	0	0	1	0	0	0	901	1145	40	1	1479	1	ARHGEF3	3	56807804	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	4245901	56807804	141214626	36	409											
HSPBAP1	79663	broad.mit.edu;bcgsc.ca	37	chr3	122459462	122459462	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgaaggcggttcttcGgacctctgtgctacagggac	6	12	12	11	2	3	1	0	1	3	0	4	3	3	3	1	4	2	2	1	4	2	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HSPBAP1	NM_024610	exon8	c.C1197T	p.S399S	TTCTTCGGACCTC	.	35	12	31	1	.	32	A	122459462	G	A	122459462	2	1	4	1	0	0	0	0	0	0	0	1	7469	1103	39	1		1	HSPBAP1	3	122459462	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	65651658	122459462	75562968	37	410											
TMCC1	23023	broad.mit.edu	37	chr3	129370592	129370592	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgctgctgctgctgcTgcagctccatcttggagatg	5	11	11	14	0	1	1	0	0	1	1	2	2	2	1	3	1	7	7	3	1	0	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TMCC1	NM_001017395	exon6	c.A1694T	p.Q565L	TGCTGCTGCAGCT	.	34	3	24	0	.	105	A	129370592	T	A	129370592	3	1	4	1	0	0	0	0	1	0	0	0	16052	1580	55	5	271	5	TMCC1	3	129370592	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	6911130	129370592	68651838	38	411											
STAG1	10274	hgsc.bcm.edu	37	chr3	136136813	136136813	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccattttgtgagatcatgtgCactgaaataaacaaaaatgc	16	11	7	7	0	1	2	1	2	0	1	1	3	1	2	1	0	3	1	1	0	5	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	STAG1,NS,carcinoma,0,1	STAG1	NM_005862	exon21	c.G2110T	p.A704S	CATGTGCACTGAA	.	65	3	61	0	.	0	A	136136813	C	A	136136813	3	1	4	1	0	0	0	0	1	0	0	0	15298	724	25	3	1722	3	STAG1	3	136136813	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	6766221	136136813	61885617	39	412											
SI	6476	broad.mit.edu	37	chr3	164785167	164785167	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcctaataacttggatgctaAatgggttttgggcaaccttc	10	14	9	8	0	0	0	0	0	0	0	2	1	1	1	2	3	3	3	2	3	5	7	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SI	NM_001041	exon6	c.T596C	p.F199S	ATGCTAAATGGGT	.	239	6	192	1	.	500	G	164785167	A	G	164785167	3	3	4	1	0	0	0	0	1	0	0	0	14352	14	1	4	5059	4	SI	3	164785167	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	28648354	164785167	33237263	40	413											
DRD5	1816	ucsc.edu	37	chr4	9783917	9783917	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctctggccgtgtcagacctTttcgtggcgctgctggtcat	3	14	12	12	3	3	1	2	0	1	1	5	1	3	1	2	3	1	2	2	3	0	2	rs76288744	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	DRD5	NM_000798	exon1	c.T264C	p.L88L	AGACCTTTTCGTG	.	34	9	40	5	.	119	C	9783917	T	C	9783917	2	2	4	1	0	0	0	0	0	0	0	1	4786	1828	64	4		4	DRD5	4	9783917	Silent	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09		9783917	181370359	41	414											
ARAP2	116984	hgsc.bcm.edu;bcgsc.ca	37	chr4	36152626	36152626	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttatcattttcatagtaactCaagaagcctccttccaaaac	14	13	3	11	0	3	1	3	0	0	1	5	1	5	1	3	0	3	1	3	0	7	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ARAP2,colon,carcinoma,0,1	ARAP2	NM_015230	exon16	c.G2793A	p.L931L	GTAACTCAAGAAG	.	54	4	39	0	.	0	T	36152626	C	T	36152626	2	4	4	1	0	0	0	0	0	0	0	1	836	825	29	3		3	ARAP2	4	36152626	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	26368709	36152626	155001650	42	415											
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	54257252	54257252	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tactgtgaaaaacaaaagagGatacgaatgggacttgaagt	18	8	11	4	1	0	3	0	2	0	1	0	6	0	5	0	2	3	0	0	2	8	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_030917	exon8	c.G582A	p.R194R	AAAGAGGATACGA	.	107	50	102	0	.	.	A	54257252	G	A	54257252	2	1	4	1	0	0	0	0	0	0	0	1	5929	1165	41	3		3	FIP1L1	4	54257252	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	18104626	54257252	136897024	43	416											
LRBA	987	hgsc.bcm.edu	37	chr4	151242369	151242369	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtgccatttgttcaccGcaaataacctgttagcagtg	9	13	10	9	1	1	0	1	0	0	0	1	0	1	0	3	1	3	5	3	1	3	5	rs377257515		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LRBA,colon,carcinoma,0,1	LRBA	NM_006726	exon51	c.C7637T	p.A2546V	TTCACCGCAAATA	.	56	3	51	0	.	0	A	151242369	G	A	151242369	3	1	4	1	0	0	0	0	1	0	0	0	8976	1087	38	1	986	1	LRBA	4	151242369	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	96985117	151242369	39911907	44	417											
TRIM2	23321	bcgsc.ca	37	chr4	154237032	154237032	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcgttttggcatacggggaCgctctccggggcagctgcag	5	9	16	11	4	1	0	0	0	1	0	3	1	1	1	1	5	3	6	1	5	1	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TRIM2	NM_015271	exon8	c.C1663T	p.R555C	CGGGGACGCTCTC	.	18	3	24	0	.	105	T	154237032	T	T	154237032	3	4	4	1	0	0	0	0	1	0	0	0	16555	536	19	1	1693	1	TRIM2	4	154237032	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	2994663	154237032	36917244	45	418											
BRD9	65980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	864589	864589	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aaggtggtctagagttaggtCttggcagaggccgcaggctc	8	9	16	8	1	2	2	0	0	2	2	3	2	2	2	1	6	0	4	1	6	3	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_023924	exon16	c.G1788A	p.K596K	TTAGGTCTTGGCA	.	296	26	47	0	.	.	T	864589	C	T	864589	2	4	4	1	0	0	0	0	0	0	0	1	1509	912	32	3		3	BRD9	5	864589	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		864589	180050671	46	419											
BRD9	65980	broad.mit.edu	37	chr5	891803	891805	+	In_Frame_Del	DEL	CTT	CTT	-																															agatgcttctccttctcggaCttcttcttcttcttcttttt																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	BRD9	NM_023924	exon2	c.217_219del	p.73_73del	CTCGGACTTCTTC	.	267	6	44	0	.	113	-	891805	CTT	-	891803	7	5	4	1	0	1	0	1	0	0	0	0	1509	565	20	0	1634	0	BRD9	5	891803	In_Frame_Del	DEL	CTT	TCGA-3X-AAVC-01A-21D-A417-09	27214	891803	180023457	47	420											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	13811890	13811890	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agactcggtgtacagctgacGaagaatttctgcttcttgag	10	12	11	8	2	2	4	0	2	2	2	3	5	2	4	0	1	3	3	0	1	3	4	rs376707969	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	DNAH5,NS,malignant_melanoma,0,3	DNAH5	NM_001369	exon44	c.C7273A	p.R2425S	GCTGACGAAGAAT	.	61	7	61	0	.	0	T	13811890	G	T	13811890	3	4	4	1	0	0	0	0	1	0	0	0	4632	1058	37	2	6745	2	DNAH5	5	13811890	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	12920087	13811890	167103370	48	421											
IL6ST	3572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	55243387	55243387	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ataggaatgctaagcaaacaGgcacgactatggcttcaatt	15	9	9	8	1	1	0	1	0	0	0	1	2	1	1	0	3	3	4	0	3	6	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_002184	exon15	c.C1871A	p.P624H	CAAACAGGCACGA	.	36	4	45	0	.	.	T	55243387	G	T	55243387	3	4	4	1	0	0	0	0	1	0	0	0	7747	1000	35	3	897	3	IL6ST	5	55243387	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	41431497	55243387	125671873	49	422											
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	73931139	73931139	+	Frame_Shift_Del	DEL	T	T	-																															ccgtgtgccccccaaccacaTacaggcagtgcttcagttca																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001256575	exon3	c.1173delT	p.Y391X	ACCACATACAGGC	.	19	12	20	0	.	.	-	73931139	T	-	73931139	7	5	4	1	0	1	0	1	0	0	0	0	5141	1406	49	0	601	0	ENC1	5	73931139	Frame_Shift_Del	DEL	T	TCGA-3X-AAVC-01A-21D-A417-09	18687752	73931139	106984121	50	423											
RFESD	317671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94991955	94991955	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tctttctaatgaaccttttaAgtgtgactctgatttttatg	9	20	6	6	0	3	3	0	3	3	0	3	3	3	3	1	0	1	0	1	0	4	7	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001131066	exon6	c.A575G	p.K192R	CTTTTAAGTGTGA	.	47	9	53	0	.	.	G	94991955	A	G	94991955	3	3	4	1	0	0	0	0	1	0	0	0	13301	72	3	4	593	4	RFESD	5	94991955	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	21060816	94991955	85923305	51	424											
SLC12A2	6558	hgsc.bcm.edu;bcgsc.ca	37	chr5	127483404	127483404	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cattagcatccctagtgagtGctcccaaaatatttcaggta	12	12	7	10	0	1	1	1	1	0	0	3	1	3	1	2	1	2	3	2	1	6	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001046	exon11	c.G1864A	p.A622T	GTGAGTGCTCCCA	.	33	4	35	0	.	.	A	127483404	G	A	127483404	3	1	4	1	0	0	0	0	1	0	0	0	14438	1319	46	3	1906	3	SLC12A2	5	127483404	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	32491449	127483404	53431856	52	425											
PCDHA5	56143	hgsc.bcm.edu	37	chr5	140203213	140203213	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gccagcgcctggcagtgcgcGcatcccgttccgcgtggggc	3	6	16	16	6	0	0	0	0	0	0	2	0	2	0	4	3	2	3	4	3	0	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PCDHA5_ENST00000529859,colon,carcinoma,0,2	PCDHA5_ENST00000529859	NM_018908	exon1	c.G1853A	p.R618H	GTGCGCGCATCCC	.	46	2	72	1	.	0	A	140203213	G	A	140203213	3	1	4	1	0	0	0	0	1	0	0	0	11574	1087	38	1	1855	1	PCDHA5	5	140203213	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	12719809	140203213	40712047	53	426											
PCDHGA3	56112	hgsc.bcm.edu	37	chr5	140725274	140725274	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggaccagaacgacaaCgcgcccgagatcctgtaccc	10	5	11	15	4	0	2	0	0	0	2	1	5	1	3	4	1	4	2	4	1	3	1	rs200612120		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PCDHGA3_ENST00000253812,NS,carcinoma,0,3	PCDHGA3_ENST00000253812	NM_032011	exon1	c.C1674T	p.N558N	CGACAACGCGCCC	.	45	3	59	2	0.001	0	T	140725274	C	T	140725274	2	4	4	1	0	0	0	0	0	0	0	1	11602	535	19	1		1	PCDHGA3	5	140725274	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	522061	140725274	40189986	54	427											
ARAP3	64411	bcgsc.ca	37	chr5	141039000	141039000	+	Missense_Mutation	SNP	A	T	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgtccttccaggtggtgataAgactgacctccaagtcaatc	10	10	9	12	1	1	3	1	2	0	1	5	3	4	3	4	2	0	0	4	2	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ARAP3	NM_022481	exon23	c.T3311A	p.L1104H	GTGATAAGACTGA	.	14	3	43	0	.	139	T	141039000	T	T	141039000	3	4	4	1	0	0	0	0	1	0	0	0	837	72	3	5	1367	5	ARAP3	5	141039000	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	313726	141039000	39876260	55	428											
ZFP57	346171	hgsc.bcm.edu	37	chr6	29640988	29640988	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggtgtctggaattcagcctgGgtgcctggaatcctcaaagt	8	11	13	9	0	3	0	2	0	1	0	4	2	4	2	3	4	2	0	3	4	3	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZFP57,bladder,carcinoma,0,2	ZFP57	NM_001109809	exon4	c.C900A	p.T300T	AGCCTGGGTGCCT	.	32	2	51	0	.	0	T	29640988	G	T	29640988	2	4	4	1	0	0	0	0	0	0	0	1	17709	1219	43	3		3	ZFP57	6	29640988	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		29640988	141474079	56	429											
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	50696636	50696636	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggccgtttgtcccttcttagTtctacttccaaatacaaggt	8	15	7	11	1	2	0	0	0	2	0	4	0	4	0	3	2	2	2	3	2	5	7	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_172238	exon4	c.T666C	p.S222S	TCTTAGTTCTACT	.	27	16	48	0	.	.	C	50696636	T	C	50696636	2	2	4	1	0	0	0	0	0	0	0	1	15850	1722	60	4		4	TFAP2D	6	50696636	Silent	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	21055648	50696636	120418431	57	430											
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	109787628	109787628	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctatgaattttcaagtgaGccttcaagttgtctaagcga	11	14	9	7	1	3	2	2	2	1	0	3	3	3	2	1	0	3	2	1	0	5	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_014797	exon7	c.C1520T	p.A507V	AAGTGAGCCTTCA	.	47	8	38	0	.	.	A	109787628	G	A	109787628	3	1	4	1	0	0	0	0	1	0	0	0	17590	971	34	3	577	3	ZBTB24	6	109787628	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	59090992	109787628	61327439	58	431											
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	119295656	119295656	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttattaaaatctgcccgcAtgatatttttctctctgagg	9	17	6	9	1	4	2	0	2	4	0	5	2	4	2	1	1	1	1	1	1	4	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_024581	exon14	c.T2852C	p.M951T	GCCCGCATGATAT	.	49	7	57	0	.	.	G	119295656	A	G	119295656	3	3	4	1	0	0	0	0	1	0	0	0	5542	217	8	4	590	4	FAM184A	6	119295656	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	9508028	119295656	51819411	59	432											
RPS6KA2	6196	ucsc.edu;bcgsc.ca	37	chr6	166826350	166826350	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggtgttctgtttagaGcaaagtaggtggcggccatc	8	11	14	8	1	1	2	0	1	1	1	2	2	1	2	2	4	1	4	2	4	3	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	RPS6KA2	NM_001006932	exon22	c.C2126A	p.A709D	TTTAGAGCAAAGT	.	36	4	30	0	.	212	T	166826350	G	T	166826350	3	4	4	1	0	0	0	0	1	0	0	0	13703	971	34	3	103	3	RPS6KA2	6	166826350	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	47530694	166826350	4288717	60	433											
MLLT4	4301	broad.mit.edu	37	chr6	168289932	168289932	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agcccagcattctgatgaaaAgggtgctaaagaaattattc	15	10	9	7	0	1	3	0	2	1	1	2	3	1	3	1	1	3	2	1	1	6	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	MLLT4,NS,carcinoma,-1,1	MLLT4	NM_001040000	exon7	c.A935G	p.K312R	ATGAAAAGGGTGC	.	40	3	46	0	.	351	G	168289932	A	G	168289932	3	3	4	1	0	0	0	0	1	0	0	0	9677	72	3	4	961	4	MLLT4	6	168289932	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	1463582	168289932	2825135	61	434											
GNA12	2768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2771312	2771312	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaaggggatcttcttaataaCgaagtcatgctccacaattc	14	11	7	9	1	3	0	1	0	2	0	5	2	4	1	1	2	2	1	1	2	5	4	rs201475988	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_007353	exon4	c.G649A	p.V217I	TAATAACGAAGTC	.	39	18	49	0	.	.	T	2771312	C	T	2771312	3	4	4	1	0	0	0	0	1	0	0	0	6542	536	19	1	500	1	GNA12	7	2771312	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		2771312	156367351	62	435											
CCDC129	223075	hgsc.bcm.edu	37	chr7	31617905	31617905	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agtggccttgctcatctatgCcggccaagcaggctcctcct	6	10	10	15	1	2	0	1	0	1	0	4	0	4	0	5	3	3	3	5	3	2	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CCDC129,NS,carcinoma,0,1	CCDC129	NM_001257968	exon8	c.C1105T	p.P369S	TCTATGCCGGCCA	.	25	2	34	0	.	0	T	31617905	C	T	31617905	3	4	4	1	0	0	0	0	1	0	0	0	2782	739	26	3	1053	3	CCDC129	7	31617905	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	28846593	31617905	127520758	63	436											
ABCA13	154664	hgsc.bcm.edu	37	chr7	48284188	48284188	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ctcagattacagcatctgtgGaaattgcaaagcttgctgca	12	11	9	9	0	2	1	1	0	1	1	2	2	2	2	0	1	6	5	0	1	3	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ABCA13,bladder,carcinoma,0,1	ABCA13	NM_152701	exon11	c.G1278T	p.W426C	TCTGTGGAAATTG	.	43	2	39	0	.	0	T	48284188	G	T	48284188	3	4	4	1	0	0	0	0	1	0	0	0	31	1183	41	3	1149	3	ABCA13	7	48284188	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	16666283	48284188	110854475	64	437											
POM121	9883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	72416719	72416719	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	attggtgcgggatccaagacCccaggggctcgacagcgact	9	6	14	12	3	0	1	0	0	0	1	2	4	1	2	3	4	2	1	3	4	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_172020	exon13	c.C2901T	p.T967T	CAAGACCCCAGGG	.	100	42	120	0	.	.	T	72416719	C	T	72416719	2	4	4	1	0	0	0	0	0	0	0	1	12287	610	22	3		3	POM121	7	72416719	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	24132531	72416719	86721944	65	438											
CYP3A43	64816	hgsc.bcm.edu	37	chr7	99459440	99459440	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	acccaaagtactggacagagCctgagaagttctgccctgaa	13	7	10	11	0	1	3	0	2	1	2	1	5	1	4	3	1	3	2	3	1	4	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CYP3A43,NS,carcinoma,0,1	CYP3A43	NM_057096	exon11	c.C1231T	p.P411S	ACAGAGCCTGAGA	.	70	3	78	0	.	0	T	99459440	C	T	99459440	3	4	4	1	0	0	0	0	1	0	0	0	4202	739	26	3	1273	3	CYP3A43	7	99459440	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	27042721	99459440	59679223	66	439											
PLXNA4	91584	hgsc.bcm.edu	37	chr7	132174138	132174138	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagacgtcatgcggtccctGtcctccgtgaagacgggaat	9	8	12	12	4	1	3	1	1	0	2	4	4	4	4	3	2	1	0	3	2	2	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PLXNA4_ENST00000423507,NS,carcinoma,0,7	PLXNA4_ENST00000423507	NM_001105543	exon3	c.C1284A	p.D428E	GTCCCTGTCCTCC	.	30	2	36	0	.	0	T	132174138	G	T	132174138	3	4	4	1	0	0	0	0	1	0	0	0	12170	1368	48	3	4834	3	PLXNA4	7	132174138	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	32714698	132174138	26964525	67	440											
GIMAP6	474344	hgsc.bcm.edu	37	chr7	150324841	150324841	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tccccagcaggcatctgtggGcttcctcagattccttctgg	5	12	10	14	0	3	1	1	0	2	1	6	1	6	1	4	3	1	3	4	3	0	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	GIMAP6,NS,carcinoma,0,1	GIMAP6	NM_001244072	exon3	c.C1055T	p.A352V	CTGTGGGCTTCCT	.	26	2	51	0	.	0	A	150324841	G	A	150324841	3	1	4	1	0	0	0	0	1	0	0	0	6425	1203	42	3	37	3	GIMAP6	7	150324841	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	18150703	150324841	8813822	68	441											
GALNT11	63917	hgsc.bcm.edu;bcgsc.ca	37	chr7	151802439	151802439	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attcgagggagaatgattggCgcggcccacgcgacaggtat	10	7	15	9	5	0	2	0	1	0	1	1	5	0	2	1	4	0	1	1	4	2	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_022087	exon5	c.C696T	p.G232G	GATTGGCGCGGCC	.	69	4	78	0	.	.	T	151802439	C	T	151802439	2	4	4	1	0	0	0	0	0	0	0	1	6249	755	27	1		1	GALNT11	7	151802439	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	1477598	151802439	7336224	69	442											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	86057705	86057705	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caatggaagcaaaaattaagCaacttgcttttgctttaaat	16	13	6	6	0	0	0	0	0	0	0	0	1	0	1	0	1	5	4	0	1	8	6	rs372350812	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_033402	exon19	c.C3058A	p.Q1020K	ATTAAGCAACTTG	.	172	103	68	0	.	.	A	86057705	C	A	86057705	3	1	4	1	0	0	0	0	1	0	0	0	9071	711	25	3	3132	3	LRRCC1	8	86057705	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		86057705	60306317	70	443											
MMP16	4325	broad.mit.edu	37	chr8	89053972	89053972	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atccaggttctaccttgagtAtctggttgttgaatttccaa	9	16	8	8	0	2	2	0	2	2	0	4	2	4	2	3	2	1	4	3	2	4	7	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MMP16	NM_005941	exon10	c.T1541A	p.I514K	TTGAGTATCTGGT	.	35	3	42	0	.	176	T	89053972	A	T	89053972	3	4	4	1	0	0	0	0	1	0	0	0	9703	449	16	5	286	5	MMP16	8	89053972	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	2996267	89053972	57310050	71	444											
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	95539408	95539408	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caatttcaaaagtagtcttgTatggacaactgaagtataag	16	12	8	5	0	2	1	1	1	1	0	2	2	2	2	0	1	1	3	0	1	9	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015496	exon8	c.A1064G	p.Y355C	GTCTTGTATGGAC	.	46	27	22	0	.	.	C	95539408	T	C	95539408	3	2	4	1	0	0	0	0	1	0	0	0	8273	1638	57	4	4496	4	KIAA1429	8	95539408	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	6485436	95539408	50824614	72	445											
ANGPT1	284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	108315583	108315583	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tctcttcctctctttttcctCcctttagtaaaactgcaaaa	9	17	2	13	0	2	0	0	0	2	0	7	0	5	0	3	0	2	2	3	0	5	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001146	exon5	c.G821T	p.G274V	TTTCCTCCCTTTA	.	122	32	47	0	.	.	A	108315583	C	A	108315583	3	1	4	1	0	0	0	0	1	0	0	0	606	855	30	3	695	3	ANGPT1	8	108315583	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	12776175	108315583	38048439	73	446											
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	120795791	120795791	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcggagctgatactgccacaTaaaatcagcttgctcaaatt	13	10	8	10	1	2	1	2	1	0	0	2	2	2	2	1	1	5	3	1	1	4	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003184	exon16	c.A1942G	p.M648V	GCCACATAAAATC	.	39	28	35	0	.	.	C	120795791	T	C	120795791	3	2	4	1	0	0	0	0	1	0	0	0	15581	1406	49	4	1701	4	TAF2	8	120795791	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	12480208	120795791	25568231	74	447											
ZNF250	58500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	146107584	146107584	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgaggcttctccccagtGtgtaccctctggtggctccg	3	12	12	14	1	2	1	0	1	2	0	4	1	3	1	4	3	1	3	4	3	1	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_021061	exon6	c.C999A	p.H333Q	CCCAGTGTGTACC	.	30	5	25	0	.	.	T	146107584	G	T	146107584	3	4	4	1	0	0	0	0	1	0	0	0	17853	1368	48	3	687	3	ZNF250	8	146107584	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	25311793	146107584	256438	75	448											
MLLT3	4300	hgsc.bcm.edu;bcgsc.ca	37	chr9	20414313	20414313	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctactgctgctgctactGctgctgctgctgctgctgct	2	14	11	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	0	0	2	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004529	exon5	c.C531T	p.S177S	GCTACTGCTGCTG	.	48	4	44	0	.	.	A	20414313	G	A	20414313	2	1	4	1	0	0	0	0	0	0	0	1	9676	1310	46	3		3	MLLT3	9	20414313	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		20414313	120799118	76	449											
PRUNE2	158471	hgsc.bcm.edu	37	chr9	79270373	79270373	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcactgggactcagcacGccctcttcaaaggggatgtc	9	7	12	13	1	3	0	2	0	1	0	4	2	3	2	1	3	2	3	1	3	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PRUNE2_ENST00000376718,colon,carcinoma,0,4	PRUNE2_ENST00000376718	NM_015225	exon10	c.C8322A	p.G2774G	CAGCACGCCCTCT	.	23	3	33	0	.	0	T	79270373	G	T	79270373	2	4	4	1	0	0	0	0	0	0	0	1	12690	1074	38	2		2	PRUNE2	9	79270373	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	58856060	79270373	61943058	77	450											
WDR34	89891	hgsc.bcm.edu	37	chr9	131396553	131396553	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gggccgcactggggaccagcGcacagcaaacagatacttga	12	4	13	12	2	0	2	0	1	0	1	0	3	0	3	2	3	4	3	2	3	2	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	WDR34,caecum,carcinoma,0,1	WDR34	NM_052844	exon8	c.C1324T	p.R442C	ACCAGCGCACAGC	.	28	3	42	0	.	0	A	131396553	G	A	131396553	3	1	4	1	0	0	0	0	1	0	0	0	17348	1087	38	1	294	1	WDR34	9	131396553	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	52126180	131396553	9816878	78	451											
BEND7	222389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13541852	13541852	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	catactgccctgagaactgtCcactctggggcggtagctca	8	9	11	13	1	2	1	1	1	1	1	3	2	3	1	2	3	4	2	2	3	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001100912	exon2	c.G218C	p.G73A	AACTGTCCACTCT	.	43	16	51	0	.	.	G	13541852	C	G	13541852	3	3	4	1	0	0	0	0	1	0	0	0	1401	855	30	5	1267	5	BEND7	10	13541852	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		13541852	121992895	79	452											
ANK3	288	hgsc.bcm.edu	37	chr10	61828580	61828580	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cggacaactcggactgcatcTttttttcttcttcagagagg	8	14	9	10	2	4	1	1	0	3	1	5	4	4	3	0	3	2	1	0	3	1	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.,3	.	NM_020987	exon37	c.A12059G	p.K4020R	TGCATCTTTTTTT	.	66	3	77	0	.	703	C	61828580	T	C	61828580	3	2	4	1	0	0	0	0	1	0	0	0	618	1609	56	4	1415	4	ANK3	10	61828580	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	48286728	61828580	73706167	80	453											
VPS26A	9559	hgsc.bcm.edu	37	chr10	70916899	70916899	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagccatatgaatcttacatCggtgccaatgtccgcttgag	11	11	9	10	2	1	2	0	2	1	0	3	2	2	2	3	1	3	1	3	1	5	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	VPS26A,rectum,carcinoma,0,1	VPS26A	NM_004896	exon4	c.C366A	p.I122I	TTACATCGGTGCC	.	50	2	68	0	.	0	A	70916899	C	A	70916899	2	1	4	1	0	0	0	0	0	0	0	1	17257	874	31	2		2	VPS26A	10	70916899	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	9088319	70916899	64617848	81	454											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1016412	1016414	+	In_Frame_Del	DEL	GAG	GAG	-																															cagaaggactgggagaaaatGaggaggacagctgattagtt																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_005961	exon31	c.6388_6390del	p.2130_2130del	GAAAATGAGGAGG	.	43	14	27	0	.	.	-	1016414	GAG	-	1016412	7	5	4	1	0	1	0	1	0	0	0	0	10028	1294	45	0	942	0	MUC6	11	1016412	In_Frame_Del	DEL	GAG	TCGA-3X-AAVC-01A-21D-A417-09		1016412	133990104	82	455											
KRTAP5-5	439915	hgsc.bcm.edu	37	chr11	1651115	1651115	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtggctccggctgtggAggccgtggctccggctgtgg	1	9	20	11	3	0	0	0	0	0	0	2	1	2	1	3	8	0	5	3	8	0	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	KRTAP5-5,NS,carcinoma,0,1	KRTAP5-5	NM_001001480	exon1	c.A45G	p.G15G	CTGTGGAGGCCGT	.	69	4	71	0	.	0	G	1651115	A	G	1651115	2	3	4	1	0	0	0	0	0	0	0	1	8603	291	11	4		4	KRTAP5-5	11	1651115	Silent	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	634703	1651115	133355401	83	456											
CD59	966	hgsc.bcm.edu	37	chr11	33731761	33731761	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcccaccattttcaaGctgttcgttaaagttacaca	11	13	7	10	1	1	0	1	0	0	0	3	1	2	1	2	1	2	4	2	1	4	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_203331	exon5	c.C298T	p.L100F	TTTCAAGCTGTTC	.	65	4	95	0	.	.	A	33731761	G	A	33731761	3	1	4	1	0	0	0	0	1	0	0	0	3048	971	34	3	92	3	CD59	11	33731761	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	32080646	33731761	101274755	84	457											
TSPAN18	90139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	44941490	44941490	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggaaccccaaagtcgggaCggggtcctgctgagccggga	9	4	17	11	3	0	1	0	1	0	0	2	4	1	4	4	5	3	1	4	5	2	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_130783	exon7	c.C555T	p.D185D	TCGGGACGGGGTC	.	33	13	45	0	.	.	T	44941490	C	T	44941490	2	4	4	1	0	0	0	0	0	0	0	1	16703	535	19	1		1	TSPAN18	11	44941490	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	11209729	44941490	90065026	85	458											
UBE2L6	9246	broad.mit.edu	37	chr11	57322034	57322034	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcatgggaggcttgaaCggatactccggcgggaagct	9	9	15	8	3	1	2	1	2	0	0	2	5	2	5	1	5	3	2	1	5	3	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	UBE2L6	NM_004223	exon3	c.G186A	p.P62P	CTTGAACGGATAC	.	35	4	44	1	.	20	T	57322034	C	T	57322034	2	4	4	1	0	0	0	0	0	0	0	1	16925	523	19	1		1	UBE2L6	11	57322034	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	12380544	57322034	77684482	86	459											
OR9I1	219954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	57886193	57886193	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacagcagtgatgtgagaggCacatgtggagaaagtcttgg	12	8	15	6	0	1	3	0	2	1	2	1	5	1	3	0	3	1	2	0	3	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001005211	exon1	c.G724A	p.A242T	GAGAGGCACATGT	.	12	5	17	0	.	.	T	57886193	C	T	57886193	3	4	4	1	0	0	0	0	1	0	0	0	11300	710	25	3	224	3	OR9I1	11	57886193	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	564159	57886193	77120323	87	460											
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57982413	57982413	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctatcagcttggataCgtaccttcatacccccatgt	8	13	8	12	1	2	0	2	0	0	0	2	1	2	1	3	2	4	3	3	2	4	6	rs140365237	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	OR1S1,NS,carcinoma,-1,3	OR1S1	NM_001004458	exon1	c.C197T	p.T66M	TGGATACGTACCT	.	62	35	89	0	0.000	-1	T	57982413	C	T	57982413	3	4	4	1	0	0	0	0	1	0	0	0	11020	536	19	1	199	1	OR1S1	11	57982413	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	96220	57982413	77024103	88	461											
TMEM132A	54972	ucsc.edu;bcgsc.ca	37	chr11	60696291	60696291	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtggagctgcgcccagCagaccccccgcagtaccagg	7	4	15	15	2	0	1	0	0	0	1	0	2	0	2	5	3	4	4	5	3	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TMEM132A	NM_178031	exon4	c.C725T	p.A242V	GCCCAGCAGACCC	.	30	4	27	0	.	135	T	60696291	C	T	60696291	3	4	4	1	0	0	0	0	1	0	0	0	16105	710	25	3	739	3	TMEM132A	11	60696291	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	2713878	60696291	74310225	89	462											
EIF1AD	84285	broad.mit.edu;ucsc.edu	37	chr11	65767103	65767103	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	acaaacgagatttcagccttCaccttttctccctcttcaat	10	14	3	14	1	5	1	3	0	2	1	6	2	5	1	3	0	2	0	3	0	2	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	EIF1AD	NM_001242483	exon4	c.G240A	p.V80V	AGCCTTCACCTTT	.	19	4	15	0	.	10	T	65767103	C	T	65767103	2	4	4	1	0	0	0	0	0	0	0	1	5017	813	29	3		3	EIF1AD	11	65767103	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	5070812	65767103	69239413	90	463											
PACS1	55690	hgsc.bcm.edu	37	chr11	65978677	65978677	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggagaaaacgttacaagaatCggaccatcttgggctataag	15	8	11	7	2	1	2	0	0	1	2	2	4	1	3	1	3	2	2	1	3	7	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PACS1,NS,carcinoma,0,1	PACS1	NM_018026	exon4	c.C607T	p.R203W	AAGAATCGGACCA	.	39	3	52	0	.	0	T	65978677	C	T	65978677	3	4	4	1	0	0	0	0	1	0	0	0	11419	875	31	1	621	1	PACS1	11	65978677	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	211574	65978677	69027839	91	464											
BCO2	83875	hgsc.bcm.edu	37	chr11	112071442	112071442	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccttttcagatgggataagCtgggaaccccagtgtaatac	11	10	11	9	0	1	1	1	0	0	1	1	3	1	3	3	2	3	2	3	2	4	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_031938	exon7	c.C972A	p.S324R	GATAAGCTGGGAA	.	78	4	61	0	.	.	A	112071442	C	A	112071442	3	1	4	1	0	0	0	0	1	0	0	0	1383	796	28	3	998	3	BCO2	11	112071442	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	46092765	112071442	22935074	92	465											
SLC6A12	6539	hgsc.bcm.edu	37	chr12	307123	307123	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtcaggcacccctggCagatggcaaaggagaagaag	12	4	16	9	0	1	3	1	0	0	3	1	4	1	3	2	5	0	4	2	5	3	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SLC6A12,NS,carcinoma,0,1	SLC6A12	NM_001122848	exon9	c.G893A	p.C298Y	CCCTGGCAGATGG	.	34	2	34	0	.	0	T	307123	C	T	307123	3	4	4	1	0	0	0	0	1	0	0	0	14730	710	25	3	983	3	SLC6A12	12	307123	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		307123	133544772	93	466											
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14576921	14576921	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgagagtgagtgatcgtcaGcaacttgaagcagtgtacaa	14	9	12	6	1	1	4	1	4	0	1	2	5	1	4	0	0	4	3	0	0	4	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_018179	exon2	c.G72A	p.Q24Q	TCGTCAGCAACTT	.	84	57	86	0	.	.	A	14576921	G	A	14576921	2	1	4	1	0	0	0	0	0	0	0	1	1086	962	34	3		3	ATF7IP	12	14576921	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	14269798	14576921	119274974	94	467											
SLC38A1	81539	hgsc.bcm.edu	37	chr12	46633559	46633559	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gttttgcaactcagttaattCgagtccacttttgaaatgca	11	15	7	8	1	1	1	1	1	0	0	3	2	2	1	1	0	3	4	1	0	3	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SLC38A1,NS,carcinoma,0,1	SLC38A1	NM_030674	exon3	c.G25A	p.E9K	TTAATTCGAGTCC	.	48	2	45	0	.	0	T	46633559	C	T	46633559	3	4	4	1	0	0	0	0	1	0	0	0	14656	893	31	1	1498	1	SLC38A1	12	46633559	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	32056638	46633559	87218336	95	468											
C12orf10	60314	hgsc.bcm.edu	37	chr12	53700882	53700882	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acccgagagggtgccttgagCatggcccgtgccaccttggc	6	7	14	14	2	0	2	0	1	0	1	0	3	0	2	5	3	3	1	5	3	0	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_021640	exon7	c.C1080T	p.S360S	CTTGAGCATGGCC	.	38	3	57	0	.	.	T	53700882	C	T	53700882	2	4	4	1	0	0	0	0	0	0	0	1	1680	709	25	3		3	C12orf10	12	53700882	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	7067323	53700882	80151013	96	469											
XPOT	11260	hgsc.bcm.edu	37	chr12	64823857	64823857	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagtccttactgagcaGcgatgatcaactttttattt	10	14	6	11	1	1	2	1	2	0	0	2	3	2	2	3	0	4	1	3	0	3	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	XPOT,caecum,carcinoma,-1,1	XPOT	NM_007235	exon17	c.G1766T	p.S589I	TGAGCAGCGATGA	.	41	2	51	0	.	-1	T	64823857	G	T	64823857	3	4	4	1	0	0	0	0	1	0	0	0	17510	971	34	3	1828	3	XPOT	12	64823857	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	11122975	64823857	69028038	97	470											
EPYC	1833	hgsc.bcm.edu	37	chr12	91371911	91371911	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cctgtgaattcaggctcctgGggagaagagccatcaatcag	11	8	12	10	0	3	3	3	1	0	2	4	4	4	3	3	3	1	1	3	3	3	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	EPYC,NS,carcinoma,0,1	EPYC	NM_004950	exon3	c.C294A	p.P98P	CTCCTGGGGAGAA	.	53	2	49	0	.	0	T	91371911	G	T	91371911	2	4	4	1	0	0	0	0	0	0	0	1	5229	1219	43	3		3	EPYC	12	91371911	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	26548054	91371911	42479984	98	471											
SKA3	221150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21742376	21742376	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacttgggatacgatgtacCgctcaagtccaaaatctgaa	14	9	9	9	2	2	1	1	1	1	0	3	4	3	2	2	1	3	2	2	1	7	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SKA3,NS,carcinoma,0,1	SKA3	NM_145061	exon4	c.G494A	p.R165Q	ATGTACCGCTCAA	.	58	18	60	0	.	0	T	21742376	C	T	21742376	3	4	4	1	0	0	0	0	1	0	0	0	14409	652	23	1	815	1	SKA3	13	21742376	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		21742376	93427502	99	472											
SACS	26278	hgsc.bcm.edu	37	chr13	23911856	23911856	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttcagaaaaaaactgtttCtctgaaaatgtgttttcaag	15	14	6	6	0	3	2	2	1	1	1	4	2	3	2	0	0	1	2	0	0	6	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_014363	exon10	c.G6159T	p.E2053D	CTGTTTCTCTGAA	.	98	4	62	0	.	.	A	23911856	C	A	23911856	3	1	4	1	0	0	0	0	1	0	0	0	13856	912	32	3	7584	3	SACS	13	23911856	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	2169480	23911856	91258022	100	473											
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr13	28122525	28122525	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgactttgttcctctGctccttcaacatgggaacta	9	13	8	11	0	2	2	1	1	1	1	4	3	4	3	2	1	3	2	2	1	3	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_153371	exon10	c.C2020T	p.Q674X	TCCTCTGCTCCTT	.	41	9	41	0	.	.	A	28122525	G	A	28122525	4	1	4	1	0	0	0	0	0	1	0	0	8907	1328	46	3	56	3	LNX2	13	28122525	Nonsense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	4210669	28122525	87047353	101	474											
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	chr13	32914379	32914379	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atatatgtaaatgtagtataGggaagcttcataagtcagtc	15	13	9	4	0	2	0	2	0	0	0	3	1	2	1	0	1	1	4	0	1	9	8	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000059	exon11	c.G5887T	p.G1963W	AGTATAGGGAAGC	.	81	4	65	0	.	.	T	32914379	G	T	32914379	3	4	4	1	0	0	0	0	1	0	0	0	1501	1000	35	3	5925	3	BRCA2	13	32914379	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	4791854	32914379	82255499	102	475											
SUGT1	10910	broad.mit.edu	37	chr13	53240953	53240953	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgttcattagttgtctGctttggttaaacttccttct	5	22	7	7	0	3	0	1	0	2	0	4	0	4	0	1	1	2	4	1	1	3	8	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SUGT1	NM_001130912	exon11	c.G622T	p.A208S	TTGTCTGCTTTGG	.	67	3	57	0	.	37	T	53240953	G	T	53240953	3	4	4	1	0	0	0	0	1	0	0	0	15425	1319	46	3	664	3	SUGT1	13	53240953	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	20326574	53240953	61928925	103	476											
EDNRB	1910	hgsc.bcm.edu	37	chr13	78492579	78492579	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgggtggcgtcattatctCtgcggtttgcaaaagcggag	8	11	15	7	3	2	0	1	0	1	0	3	1	2	1	0	4	3	2	0	4	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	EDNRB_ENST00000446573,NS,malignant_melanoma,0,3	EDNRB_ENST00000446573	NM_001201397	exon2	c.G400T	p.E134X	TTATCTCTGCGGT	.	43	3	49	0	.	0	A	78492579	C	A	78492579	4	1	4	1	0	0	0	0	0	1	0	0	4946	922	32	3	1347	3	EDNRB	13	78492579	Nonsense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	25251626	78492579	36677299	104	477											
ZIC5	85416	broad.mit.edu	37	chr13	100622668	100622670	+	In_Frame_Del	DEL	GGC	GGC	-																															cgccgccggccgggggcggtGgcggcggcggcggcggcggc																								rs71114653		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ZIC5	NM_033132	exon1	c.1260_1262del	p.420_421del	GGCGGTGGCGGCG	.	24	8	6	0	-|1.000;|0.000	38	-	100622670	GGC	-	100622668	7	5	4	1	0	1	0	1	0	0	0	0	17740	1348	47	0	737	0	ZIC5	13	100622668	In_Frame_Del	DEL	GGC	TCGA-3X-AAVC-01A-21D-A417-09	22130089	100622668	14547210	105	478											
PRPF39	55015	hgsc.bcm.edu	37	chr14	45571897	45571897	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctgtatagtcatcattttcaGaggtaggtgggaaattctga	11	14	11	5	0	4	2	3	1	1	1	4	3	4	3	0	3	0	2	0	3	4	6	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PRPF39,NS,carcinoma,0,1	PRPF39	NM_017922	exon5	c.G735A	p.Q245Q	TTTTCAGAGGTAG	.	50	2	43	0	.	0	A	45571897	G	A	45571897	2	1	4	1	0	0	0	0	0	0	0	1	12621	933	33	3		3	PRPF39	14	45571897	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		45571897	61777643	106	479											
TRIM9	114088	hgsc.bcm.edu	37	chr14	51492033	51492033	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taccagaaactccttggcttCtttggccctgtctgacagtc	7	13	8	13	0	2	2	0	1	2	1	4	2	3	2	3	2	2	1	3	2	2	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_052978	exon2	c.G868T	p.E290X	TGGCTTCTTTGGC	.	62	4	60	0	.	.	A	51492033	C	A	51492033	4	1	4	1	0	0	0	0	0	1	0	0	16610	922	32	3	1350	3	TRIM9	14	51492033	Nonsense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	5920136	51492033	55857507	107	480											
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	105411931	105411931	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccctccagccgtgcaccaTccaacttggctcctggggcc	5	7	9	20	1	0	0	0	0	0	0	3	0	3	0	8	3	3	2	8	3	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	AHNAK2	NM_138420	exon7	c.A9857G	p.D3286G	GCACCATCCAACT	.	62	29	69	0	.	719	C	105411931	T	C	105411931	3	2	4	1	0	0	0	0	1	0	0	0	412	1435	50	4	7534	4	AHNAK2	14	105411931	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	53919898	105411931	1937609	108	481											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	54556494	54556494	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttgaagtaatccaggaaatgTttcagatttctaaagaagat	16	13	8	4	0	2	4	1	1	1	3	3	5	3	5	1	1	0	2	1	1	6	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001080534	exon7	c.T3577C	p.F1193L	GAAATGTTTCAGA	.	99	42	111	0	.	.	C	54556494	T	C	54556494	3	2	4	1	0	0	0	0	1	0	0	0	17046	1725	60	4	3603	4	UNC13C	15	54556494	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09		54556494	47974898	109	482											
BNC1	646	hgsc.bcm.edu	37	chr15	83935682	83935682	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttcaacacactgaagagcCggtccagtaggatttttagg	11	10	11	9	1	1	2	1	1	0	1	2	3	2	3	2	3	2	2	2	3	4	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	BNC1,NS,carcinoma,0,2	BNC1	NM_001717	exon3	c.G341A	p.R114Q	AAGAGCCGGTCCA	.	50	2	54	0	.	0	T	83935682	C	T	83935682	3	4	4	1	0	0	0	0	1	0	0	0	1473	652	23	1	2655	1	BNC1	15	83935682	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	29379188	83935682	18595710	110	483											
ADAMTSL3	57188	ucsc.edu;bcgsc.ca	37	chr15	84700090	84700090	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtgcttttttgttccagtgtCctggacgttgcatgggccgt	3	16	13	9	2	0	0	0	0	0	0	2	1	2	1	3	2	2	4	3	2	0	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ADAMTSL3	NM_207517	exon28	c.C4660A	p.P1554T	CAGTGTCCTGGAC	.	25	4	30	0	.	290	A	84700090	C	A	84700090	3	1	4	1	0	0	0	0	1	0	0	0	275	855	30	3	4766	3	ADAMTSL3	15	84700090	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	764408	84700090	17831302	111	484											
WDR93	56964	hgsc.bcm.edu	37	chr15	90245237	90245237	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgagggaagctgagagcaGccagatccagcccaccgtct	11	5	12	13	1	1	3	0	2	1	2	2	5	2	4	4	1	4	2	4	1	1	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020212	exon2	c.G260A	p.S87N	AGAGCAGCCAGAT	.	64	4	59	0	.	.	A	90245237	G	A	90245237	3	1	4	1	0	0	0	0	1	0	0	0	17400	971	34	3	262	3	WDR93	15	90245237	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	5545147	90245237	12286155	112	485											
PCSK6	5046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	101929744	101929744	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcccagtgtggccatcggtaCagcgctgacgcagatccgtg	7	8	13	13	4	0	2	0	1	0	1	3	2	2	2	3	2	2	3	3	2	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	p.C411Y	.	.	TCGGTACAGCGCT	.	52	4	46	0	.	.	T	101929744	C	T	101929744	3	4	4	1	0	0	0	0	1	0	0	0	11651	478	17	3	2209	3	PCSK6	15	101929744	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	11684507	101929744	601648	113	486											
C16orf45	89927	hgsc.bcm.edu	37	chr16	15675170	15675170	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agacttcctggtggacgatgCggaggtcgagcggttaaggt	8	9	17	7	4	0	1	0	0	0	1	2	5	1	3	1	6	2	1	1	6	1	2	rs371464387	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	C16orf45,NS,neuroblastoma,0,1	C16orf45	NM_033201	exon4	c.C401T	p.A134V	ACGATGCGGAGGT	.	72	3	64	0	.	0	T	15675170	C	T	15675170	3	4	4	1	0	0	0	0	1	0	0	0	1821	768	27	1	474	1	C16orf45	16	15675170	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		15675170	74679583	114	487											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18895427	18895427	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catgtcttccagaaactgacCaagaagagtagtagaaaatg	17	8	9	7	0	1	5	0	1	1	4	2	5	2	5	2	0	1	2	2	0	7	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015092	exon9	c.G1084T	p.G362C	ACTGACCAAGAAG	.	348	45	305	0	.	.	A	18895427	C	A	18895427	3	1	4	1	0	0	0	0	1	0	0	0	14849	594	21	3	10121	3	SMG1	16	18895427	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	3220257	18895427	71459326	115	488											
ZKSCAN2	342357	hgsc.bcm.edu	37	chr16	25258433	25258433	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggacaggcctgaagtgtttCataaaagcgagactctttga	12	10	12	7	1	2	3	1	2	1	1	2	5	2	4	1	2	1	1	1	2	3	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001012981	exon5	c.G1084T	p.E362X	GTGTTTCATAAAA	.	66	4	66	0	.	.	A	25258433	C	A	25258433	4	1	4	1	0	0	0	0	0	1	0	0	17745	835	29	3	1831	3	ZKSCAN2	16	25258433	Nonsense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	6363006	25258433	65096320	116	489											
SRCAP	10847	bcgsc.ca	37	chr16	30722104	30722104	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccctctgctgtcacacaGcgcaacaaacagccttggca	11	6	7	17	1	2	0	1	0	1	0	2	0	2	0	3	1	5	3	3	1	2	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SRCAP	NM_006662	exon9	c.G1164A	p.Q388Q	CACACAGCGCAAC	.	30	4	33	0	.	298	A	30722104	A	A	30722104	2	1	4	1	0	0	0	0	0	0	0	1	15191	962	34	3		3	SRCAP	16	30722104	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	5463671	30722104	59632649	117	490											
CDH5	1003	hgsc.bcm.edu	37	chr16	66424368	66424368	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtgggctctctgtttGttgaggacccagatgagccc	5	12	12	12	0	2	3	0	2	2	1	3	4	2	4	3	2	1	3	3	2	0	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CDH5,NS,lymphoid_neoplasm,0,1	CDH5	NM_001795	exon6	c.G844T	p.V282F	CTGTTTGTTGAGG	.	47	2	36	0	.	0	T	66424368	G	T	66424368	3	4	4	1	0	0	0	0	1	0	0	0	3135	1377	48	3	862	3	CDH5	16	66424368	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	35702264	66424368	23930385	118	491											
NAE1	8883	hgsc.bcm.edu	37	chr16	66839907	66839907	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttcaactttcctatatcttcTtcaacttgatagttagatac	11	18	3	9	0	4	2	2	1	2	1	5	2	5	2	1	0	3	1	1	0	7	10	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003905	exon18	c.A1353T	p.E451D	ATCTTCTTCAACT	.	104	2	60	0	.	.	A	66839907	T	A	66839907	3	1	4	1	0	0	0	0	1	0	0	0	10187	1606	56	5	263	5	NAE1	16	66839907	Missense_Mutation	SNP	T	TCGA-3X-AAVC-01A-21D-A417-09	415539	66839907	23514846	119	492											
SPIRE2	84501	hgsc.bcm.edu	37	chr16	89920723	89920723	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagcttcgggaggacgagccGcatctggagacgcctcgggc	8	5	16	12	5	1	1	0	0	1	1	3	5	1	3	2	4	2	2	2	4	1	1	rs148030912	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SPIRE2,caecum,carcinoma,0,1	SPIRE2	NM_032451	exon4	c.G675T	p.P225P	CGAGCCGCATCTG	.	74	3	61	0	.	0	T	89920723	G	T	89920723	2	4	4	1	0	0	0	0	0	0	0	1	15128	1074	38	2		2	SPIRE2	16	89920723	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	23080816	89920723	434030	120	493											
PAFAH1B1	5048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	2570445	2570445	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tcactcgagtcattttccatCctgtgttcagtgttatggtc	6	17	8	10	1	3	0	3	0	0	0	7	1	5	0	2	1	0	2	2	1	1	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000430	exon5	c.C352T	p.P118S	TTCCATCCTGTGT	.	38	8	57	0	.	.	T	2570445	C	T	2570445	3	4	4	1	0	0	0	0	1	0	0	0	11431	855	30	3	366	3	PAFAH1B1	17	2570445	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		2570445	78624765	121	494											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7577559	7577559	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ggttcatgccgcccatgcagGaactgttacacatgtagttg	9	11	11	10	1	1	0	1	0	0	0	1	1	1	1	2	2	4	5	2	2	3	4	rs28934573	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TP53_ENST00000545858,NS,carcinoma,0,147	TP53_ENST00000545858	NM_000546	exon7	c.C722T	p.S241F	ATGCAGGAACTGT	.	24	14	32	0	.	0	A	7577559	G	A	7577559	3	1	4	1	0	0	0	0	1	0	0	0	16442	1174	41	3	568	3	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	5007114	7577559	73617651	122	495											
ZNF287	57336	hgsc.bcm.edu	37	chr17	16455209	16455209	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatgaacacgttgatgCtgaataaggtttgtactctg	10	14	10	7	1	1	3	0	3	1	0	1	3	1	3	1	1	3	5	1	1	5	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020653	exon6	c.G2247A	p.Q749Q	TTGATGCTGAATA	.	95	4	90	0	.	.	T	16455209	C	T	16455209	2	4	4	1	0	0	0	0	0	0	0	1	17882	796	28	3		3	ZNF287	17	16455209	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	8877650	16455209	64740001	123	496											
NOS2	4843	hgsc.bcm.edu	37	chr17	26101406	26101406	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gggcagcccccacgggaccgGtattcattctgcatgtactt	7	10	11	13	2	2	0	1	0	1	0	2	1	2	1	3	3	3	4	3	3	2	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NOS2,NS,carcinoma,0,1	NOS2	NM_000625	exon12	c.C1353T	p.Y451Y	GGACCGGTATTCA	.	42	2	29	0	.	0	A	26101406	G	A	26101406	2	1	4	1	0	0	0	0	0	0	0	1	10590	1256	44	3		3	NOS2	17	26101406	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	9646197	26101406	55093804	124	497											
SUPT6H	6830	hgsc.bcm.edu	37	chr17	27001323	27001323	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggagaaCctagatgatcaggatgagca	15	4	18	4	0	1	4	1	2	0	2	1	11	1	9	1	6	2	1	1	6	2	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SUPT6H,NS,carcinoma,0,1	SUPT6H	NM_003170	exon3	c.C132T	p.N44N	GGAGAACCTAGAT	.	40	2	59	0	.	0	T	27001323	C	T	27001323	2	4	4	1	0	0	0	0	0	0	0	1	15456	506	18	3		3	SUPT6H	17	27001323	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	899917	27001323	54193887	125	498											
DDX52	11056	broad.mit.edu	37	chr17	35974393	35974393	+	Frame_Shift_Del	DEL	T	T	-																															tgctgttctgaccagtgaccTttttcctgtaaagagcaaag																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	DDX52	NM_007010	exon15	c.1748delA	p.K583fs	GTGACCTTTTTCC	.	2999	17	115	0	.	40	-	35974393	T	-	35974393	7	5	4	1	0	1	0	1	0	0	0	0	4393	1609	56	0	55	0	DDX52	17	35974393	Frame_Shift_Del	DEL	T	TCGA-3X-AAVC-01A-21D-A417-09	8973070	35974393	45220817	126	499											
HDAC5	10014	broad.mit.edu	37	chr17	42165022	42165022	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctgtctcctcagggtGggtggtgggctgcctgggca	2	11	16	12	0	3	0	1	0	2	0	5	0	4	0	3	5	1	2	3	5	0	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HDAC5	NM_001015053	exon13	c.C1645A	p.H549N	CAGGGTGGGTGGT	.	30	3	34	0	.	67	T	42165022	G	T	42165022	3	4	4	1	0	0	0	0	1	0	0	0	7051	1348	47	3	1786	3	HDAC5	17	42165022	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	6190629	42165022	39030188	127	500											
NPEPPS	9520	broad.mit.edu	37	chr17	45663749	45663749	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aggtgccatggagaactgggGccttgttacttataggtatg	9	12	14	6	0	0	1	0	0	0	1	0	2	0	1	2	5	3	2	2	5	5	5	rs1809279	bycluster;by2hit2allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NPEPPS,NS,carcinoma,0,2	NPEPPS	NM_006310	exon8	c.G965A	p.G322D	ACTGGGGCCTTGT	.	149	4	126	0	G|0.500;A|0.500	59	A	45663749	G	A	45663749	3	1	4	1	0	0	0	0	1	0	0	0	10622	1203	42	3	995	3	NPEPPS	17	45663749	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	3498727	45663749	35531461	128	501											
PPM1E	22843	hgsc.bcm.edu	37	chr17	57046944	57046944	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcagtgtttgatggccatggGggagtagatgctgctattta	8	13	15	5	0	0	2	0	1	0	1	0	3	0	3	1	3	2	5	1	3	3	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PPM1E,right_lower_lobe,carcinoma,0,1	PPM1E	NM_014906	exon4	c.G828T	p.G276G	CCATGGGGGAGTA	.	69	3	58	0	.	0	T	57046944	G	T	57046944	2	4	4	1	0	0	0	0	0	0	0	1	12387	1219	43	3		3	PPM1E	17	57046944	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	11383195	57046944	24148266	129	502											
SMARCD2	6603	hgsc.bcm.edu	37	chr17	61914839	61914839	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgggaggctgcgcctggggCacaagcaggcgttttcggaa	8	7	17	9	3	0	0	0	0	0	0	1	2	0	2	1	6	2	4	1	6	2	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001098426	exon2	c.G363A	p.V121V	CTGGGGCACAAGC	.	72	4	82	0	.	.	T	61914839	C	T	61914839	2	4	4	1	0	0	0	0	0	0	0	1	14832	697	25	3		3	SMARCD2	17	61914839	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	4867895	61914839	19280371	130	503											
PRKCA	5578	ucsc.edu;bcgsc.ca	37	chr17	64685166	64685166	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aactcaggcagaaattcgagGtgaggataacaaaatgcccg	16	6	11	8	2	1	2	1	1	0	1	2	4	1	3	1	3	3	1	1	3	5	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	PRKCA	NM_002737	exon8	c.918+1G>A	.	TTCGAGGTGAGGA	.	49	5	47	0	.	82	A	64685166	G	A	64685166	5	1	4	1	0	0	0	0	0	0	1	0	12559	1275	44	3	949	3	PRKCA	17	64685166	Splice_Site	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	2770327	64685166	16510044	131	504											
CACNG4	27092	bcgsc.ca	37	chr17	65026740	65026740	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctgagaccgtgggcgtcctgGctgtaaacatttacattgag	9	11	12	9	2	0	2	0	2	0	1	1	3	1	2	2	2	2	2	2	2	3	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	CACNG4	NM_014405	exon4	c.G604A	p.A202T	GTCCTGGCTGTAA	.	65	4	72	0	.	44	A	65026740	A	A	65026740	3	1	4	1	0	0	0	0	1	0	0	0	2577	1203	42	3	618	3	CACNG4	17	65026740	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	341574	65026740	16168470	132	505											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	76440749	76440749	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcacagcttctgcagggccGtcttgttcttccactccttg	4	14	9	14	1	3	0	0	0	3	0	5	0	5	0	3	1	3	4	3	1	0	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_173628	exon71	c.C11465T	p.T3822M	AGGGCCGTCTTGT	.	19	4	14	0	.	.	A	76440749	G	A	76440749	3	1	4	1	0	0	0	0	1	0	0	0	4629	1145	40	1	1967	1	DNAH17	17	76440749	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	11414009	76440749	4754461	133	506											
NPLOC4	55666	hgsc.bcm.edu;bcgsc.ca	37	chr17	79526288	79526288	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcagagggcaggcgccctaGgtcctggggaggctgcacat	8	5	17	11	1	0	1	0	0	0	1	1	2	1	2	2	6	2	4	2	6	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_017921	exon17	c.C1824A	p.T608T	GCCCTAGGTCCTG	.	56	4	73	0	.	.	T	79526288	G	T	79526288	2	4	4	1	0	0	0	0	0	0	0	1	10634	987	35	3		3	NPLOC4	17	79526288	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	3085539	79526288	1668922	134	507											
DSC1	1823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	28710755	28710755	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aaaatgatgtctttgatttaCcttttactgtttaattttta	11	22	4	4	0	1	2	0	2	1	0	1	2	1	2	1	0	2	1	1	0	6	10	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004948	exon17	c.2533+1G>A	.	GATTTACCTTTTA	.	65	39	64	0	.	.	T	28710755	C	T	28710755	5	4	4	1	0	0	0	0	0	0	1	0	4791	521	18	3		3	DSC1	18	28710755	Splice_Site	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		28710755	49366493	135	508											
FHOD3	80206	hgsc.bcm.edu	37	chr18	34335227	34335227	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgcagcagaaacagaaacggGccaaccacagagagagaaat	19	2	11	9	1	0	4	0	0	0	4	0	6	0	4	2	1	5	2	2	1	4	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	FHOD3,right_upper_lobe,carcinoma,0,1	FHOD3	NM_025135	exon22	c.G3853A	p.A1285T	AAACGGGCCAACC	.	47	2	61	0	.	0	A	34335227	G	A	34335227	3	1	4	1	0	0	0	0	1	0	0	0	5916	1203	42	3	3939	3	FHOD3	18	34335227	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	5624472	34335227	43742021	136	509											
ONECUT2	9480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	55103945	55103947	+	In_Frame_Del	DEL	ATC	ATC	-																															cgtcgggccagctggaagaaAtcaacaccaaagaggtggcc																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004852	exon1	c.996_998del	p.332_333del	GAAGAAATCAACA	.	28	15	38	0	.	.	-	55103947	ATC	-	55103945	7	5	4	1	0	1	0	1	0	0	0	0	10917	101	4	0	999	0	ONECUT2	18	55103945	In_Frame_Del	DEL	ATC	TCGA-3X-AAVC-01A-21D-A417-09	20768718	55103945	22973303	137	510											
ANKRD24	170961	bcgsc.ca	37	chr19	4217178	4217178	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	agggaccacaaacatggaggCcacgggctctagggccacag	12	3	14	12	1	1	0	0	0	1	0	1	2	1	2	3	5	1	1	3	5	2	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ANKRD24	NM_133475	exon18	c.C2021T	p.A674V	TGGAGGCCACGGG	.	10	3	18	0	.	180	T	4217178	T	T	4217178	3	4	4	1	0	0	0	0	1	0	0	0	649	739	26	3	2087	3	ANKRD24	19	4217178	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		4217178	54911805	138	511											
SH3GL1	6455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	4362634	4362634	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atcttgggggctgtggtgcaGgggaagcccccgttggactg	5	9	18	9	1	1	0	0	0	1	0	1	2	1	2	2	6	2	3	2	6	1	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003025	exon8	c.C828G	p.P276P	GGTGCAGGGGAAG	.	42	24	42	0	.	.	C	4362634	G	C	4362634	2	2	4	1	0	0	0	0	0	0	0	1	14305	987	35	5		5	SH3GL1	19	4362634	Silent	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	145456	4362634	54766349	139	512											
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10385609	10385609	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgggaacaaccggaaggtgtAtgaactgagcaatgtgcaag	14	7	14	6	1	0	2	0	2	0	0	0	4	0	4	1	3	5	3	1	3	7	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000201	exon2	c.A236G	p.Y79C	AGGTGTATGAACT	.	33	8	29	0	.	.	G	10385609	A	G	10385609	3	3	4	1	0	0	0	0	1	0	0	0	7523	449	16	4	242	4	ICAM1	19	10385609	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	6022975	10385609	48743374	140	513											
GCDH	2639	ucsc.edu;bcgsc.ca	37	chr19	13007078	13007078	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggctcggtgtgaagatggctGcattcggggcttcctgctgg	4	11	17	9	2	0	2	0	1	0	1	3	2	1	2	1	6	2	5	1	6	1	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	GCDH	NM_013976	exon8	c.G695T	p.C232F	ATGGCTGCATTCG	.	36	4	50	0	.	76	T	13007078	G	T	13007078	3	4	4	1	0	0	0	0	1	0	0	0	6327	1319	46	3	721	3	GCDH	19	13007078	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	2621469	13007078	46121905	141	514											
KIRREL2	84063	bcgsc.ca	37	chr19	36351555	36351555	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tagcgccaaccgcagtactgCgctggatgtgctgtgtgagc	7	9	14	11	3	0	1	0	1	0	0	0	2	0	2	2	1	6	4	2	1	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	KIRREL2	NM_199180	exon7	c.C914T	p.A305V	GTACTGCGCTGGA	.	15	3	32	0	.	170	T	36351555	T	T	36351555	3	4	4	1	0	0	0	0	1	0	0	0	8368	768	27	1	940	1	KIRREL2	19	36351555	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	23344477	36351555	22777428	142	515											
ZNF677	342926	hgsc.bcm.edu	37	chr19	53740544	53740544	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttctctccagtatgagttCtctgatgaccccaaaggtgt	8	14	9	10	0	2	3	0	3	2	0	5	3	3	3	3	1	0	3	3	1	2	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF677,colon,carcinoma,0,1	ZNF677	NM_182609	exon5	c.G1436T	p.R479I	TGAGTTCTCTGAT	.	46	2	50	0	.	0	A	53740544	C	A	53740544	3	1	4	1	0	0	0	0	1	0	0	0	18141	913	32	3	322	3	ZNF677	19	53740544	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	17388989	53740544	5388439	143	516											
ZNF761	388561	hgsc.bcm.edu	37	chr19	53958982	53958982	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtagacttcatactggagaGaaaccttacaaatgtgaaga	16	9	9	7	1	1	4	1	1	0	3	1	6	1	5	1	1	3	1	1	1	6	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF761,colon,carcinoma,0,1	ZNF761	NM_001008401	exon7	c.G1221T	p.E407D	TGGAGAGAAACCT	.	66	3	83	0	.	0	T	53958982	G	T	53958982	3	4	4	1	0	0	0	0	1	0	0	0	18186	933	33	3	1232	3	ZNF761	19	53958982	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	218438	53958982	5170001	144	517											
CNOT3	4849	hgsc.bcm.edu	37	chr19	54649452	54649452	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	catcctcgttgacgccatccGcaagatcaaggacgacgttg	10	8	10	13	5	1	2	1	1	0	1	4	4	3	3	3	1	0	3	3	1	2	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CNOT3_ENST00000358389,NS,malignant_melanoma,0,2	CNOT3_ENST00000358389	NM_014516	exon8	c.G602A	p.R201H	CCATCCGCAAGAT	.	19	2	27	0	.	0	A	54649452	G	A	54649452	3	1	4	1	0	0	0	0	1	0	0	0	3643	1087	38	1	628	1	CNOT3	19	54649452	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	690470	54649452	4479531	145	518											
ZNF628	89887	hgsc.bcm.edu	37	chr19	55994920	55994920	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggtctaggggtgcagggagCggccagcgctggggccagcg	5	4	22	10	3	1	0	0	0	1	0	1	1	1	1	2	7	4	2	2	7	1	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF628_ENST00000391718,colon,carcinoma,0,2	ZNF628_ENST00000391718	NM_033113	exon3	c.C2360T	p.A787V	AGGGAGCGGCCAG	.	25	2	19	0	.	0	T	55994920	C	T	55994920	3	4	4	1	0	0	0	0	1	0	0	0	18109	768	27	1	2350	1	ZNF628	19	55994920	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	1345468	55994920	3134063	146	519											
USP29	0	broad.mit.edu	37	chr19	57641516	57641517	+	Missense_Mutation	DNP	GA	GA	TC																															aactgtcagatgtgtaagcaGaagagttgtgttgcaaggca																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	GA	GA						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	USP29	NM_020903	exon4	c.A1474C	p.QK491HQ	AAGCAGAAGAGTT	.	29	3	25	0	.	186	TC	57641517	GA	TC	57641516	3	4	4	1	0	0	0	0	1	0	0	0	17119	933	33	3	1475	3	USP29	19	57641516	Missense_Mutation	DNP	GA	TCGA-3X-AAVC-01A-21D-A417-09	1646596	57641516	1487467	147	520											
USP29	57663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	57642416	57642416	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggggcactgggttctgacaaCccaggaaacaaaaacatttt	14	8	10	9	0	1	1	0	1	1	0	1	2	1	2	1	4	3	2	1	4	4	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020903	exon4	c.C2373A	p.N791K	TGACAACCCAGGA	.	46	5	54	0	.	.	A	57642416	C	A	57642416	3	1	4	1	0	0	0	0	1	0	0	0	17119	506	18	3	2375	3	USP29	19	57642416	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	900	57642416	1486567	148	521											
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	18143422	18143422	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgattgtcagacaagcgaaaAgggataggggattaccactt	14	9	12	6	1	1	2	1	1	0	1	1	5	1	4	1	3	2	0	1	3	5	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020536	exon6	c.A1504G	p.R502G	GCGAAAAGGGATA	.	32	4	55	0	.	.	G	18143422	A	G	18143422	3	3	4	1	0	0	0	0	1	0	0	0	3993	63	3	4	1526	4	CSRP2BP	20	18143422	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09		18143422	44882098	149	522											
KCNB1	3745	hgsc.bcm.edu	37	chr20	47990628	47990628	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagacagtgtcctctttgtcCatttccatttgttaggagac	8	15	8	10	0	1	2	0	0	1	2	4	3	4	2	3	1	0	1	3	1	1	4	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	KCNB1,colon,carcinoma,0,1	KCNB1	NM_004975	exon2	c.G1469T	p.W490L	TTTGTCCATTTCC	.	62	2	41	0	.	0	A	47990628	C	A	47990628	3	1	4	1	0	0	0	0	1	0	0	0	8056	595	21	3	1111	3	KCNB1	20	47990628	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	29847206	47990628	15034892	150	523											
YTHDF1	54915	hgsc.bcm.edu	37	chr20	61834909	61834909	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcccccatgctgagaacGcagggttttcagggaaaaaa	12	9	11	9	1	1	1	1	1	0	1	2	3	2	2	2	2	2	3	2	2	4	3	rs146457378		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_017798	exon4	c.C383T	p.A128V	GAGAACGCAGGGT	.	55	4	70	0	0.000	.	A	61834909	G	A	61834909	3	1	4	1	0	0	0	0	1	0	0	0	17558	1087	38	1	1304	1	YTHDF1	20	61834909	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	13844281	61834909	1190611	151	524											
ZNF512B	57473	broad.mit.edu	37	chr20	62594090	62594090	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccgctccacacccagCgggtcctcagcctcagggga	6	5	14	16	2	2	0	2	0	0	0	5	1	5	1	5	5	2	1	5	5	0	0	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF512B,colon,carcinoma,-1,1	ZNF512B	NM_020713	exon13	c.G2013A	p.P671P	ACCCAGCGGGTCC	.	46	3	45	0	.	72	T	62594090	C	T	62594090	2	4	4	1	0	0	0	0	0	0	0	1	18014	755	27	1		1	ZNF512B	20	62594090	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	759181	62594090	431430	152	525											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709645	31709645	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttctgattggcaaggCtgagaaacacaagccagccc	11	8	11	11	0	1	2	0	2	1	1	1	3	1	2	2	2	4	3	2	2	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	KRTAP27-1	NM_001077711	exon1	c.G342A	p.Q114Q	GCAAGGCTGAGAA	.	22	3	32	0	.	53	T	31709645	C	T	31709645	2	4	4	1	0	0	0	0	0	0	0	1	8588	796	28	3		3	KRTAP27-1	21	31709645	Silent	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09		31709645	16420250	153	526											
GNB1L	54584	ucsc.edu	37	chr22	19808754	19808754	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccacagctactcaccctGagaagaggagcgggcgcccc	9	3	14	15	2	1	2	1	1	0	2	1	4	1	3	4	3	3	1	4	3	2	1	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	GNB1L	NM_053004	exon3	c.C125A	p.S42X	CACCCTGAGAAGA	.	35	4	51	0	.	34	T	19808754	G	T	19808754	4	4	4	1	0	0	0	0	0	1	0	0	6558	1294	45	3	882	3	GNB1L	22	19808754	Nonsense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09		19808754	31495812	154	527											
MAP7D2	256714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	20030593	20030593	+	Frame_Shift_Del	DEL	G	G	-																															agaaaatgtcttggggataaGtttctggggcagcgtgatcc																								novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001168465	exon15	c.1947delT	p.T649fs	GGATAAGTTTCTG	.	72	23	70	0	.	.	-	20030593	G	-	20030593	7	5	4	1	0	1	0	1	0	0	0	0	9318	1029	36	0	383	0	MAP7D2	23	20030593	Frame_Shift_Del	DEL	G	TCGA-3X-AAVC-01A-21D-A417-09		20030593	135239967	155	528											
PAGE1	8712	bcgsc.ca	37	chrX	49458702	49458702	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcttccctttcccttcacCttgagctgcagatgctccct	4	15	5	17	0	2	2	1	1	1	1	5	2	5	2	4	0	3	3	4	0	0	5	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	PAGE1	NM_003785	exon3	c.G166T	p.G56W	CTTCACCTTGAGC	.	101	6	95	0	.	23	A	49458702	A	A	49458702	3	1	4	1	0	0	0	0	1	0	0	0	11436	695	24	3	290	3	PAGE1	23	49458702	Missense_Mutation	SNP	C	TCGA-3X-AAVC-01A-21D-A417-09	29428109	49458702	105811858	156	529											
MSN	4478	broad.mit.edu	37	chrX	64956743	64956743	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaggaggagctgatggAgaggctgaagcagatcgagg	13	4	20	4	1	0	5	0	2	0	3	1	10	0	7	0	6	2	3	0	6	2	0	rs200135811		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MSN	NM_002444	exon9	c.A1046G	p.E349G	TGATGGAGAGGCT	.	66	3	47	1	.	89	G	64956743	A	G	64956743	3	3	4	1	0	0	0	0	1	0	0	0	9933	304	11	4	1080	4	MSN	23	64956743	Missense_Mutation	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	15498041	64956743	90313817	157	530											
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	64958961	64958961	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agaatggggcagaggctagtGctgacctacgggctgatgct	9	8	16	8	1	0	4	0	2	0	2	0	4	0	4	1	4	3	5	1	4	3	2	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_002444	exon12	c.G1474A	p.A492T	GCTAGTGCTGACC	.	42	19	34	0	.	.	A	64958961	G	A	64958961	3	1	4	1	0	0	0	0	1	0	0	0	9933	1319	46	3	1520	3	MSN	23	64958961	Missense_Mutation	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	2218	64958961	90311599	158	531											
FGF16	8823	broad.mit.edu;ucsc.edu	37	chrX	76709751	76709751	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgaggagaactctatgggtcGgtaagtttaaggtttttttt	9	16	12	4	2	1	1	0	0	1	1	2	3	1	1	0	4	1	3	0	4	4	8	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	FGF16	NM_003868	exon1	c.G105A	p.S35S	TGGGTCGGTAAGT	.	67	21	58	0	.	16	A	76709751	G	A	76709751	5	1	4	1	0	0	0	0	0	0	1	0	5877	1130	39	1	107	1	FGF16	23	76709751	Splice_Site	SNP	G	TCGA-3X-AAVC-01A-21D-A417-09	11750790	76709751	78560809	159	532											
DNASE1L1	1774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153631921	153631921	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggcaaagacgtcatcctcAtcgttgtacacgtaggaact	11	9	10	11	4	2	1	2	0	0	1	4	2	3	2	1	2	2	4	1	2	4	3	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006730	exon5	c.T354C	p.D118D	ATCCTCATCGTTG	.	42	14	42	0	.	.	G	153631921	A	G	153631921	2	3	4	1	0	0	0	0	0	0	0	1	4688	214	8	4		4	DNASE1L1	23	153631921	Silent	SNP	A	TCGA-3X-AAVC-01A-21D-A417-09	76922170	153631921	1638639	160	533											
THAP3	90326	hgsc.bcm.edu	37	chr1	6692962	6692962	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atctgatcacagctatgcccTtttggacttagattccctga	9	14	7	11	0	2	3	1	2	1	1	3	4	3	4	2	1	2	1	2	1	2	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	THAP3_ENST00000054650,NS,carcinoma,0,1	THAP3_ENST00000054650	NM_001195753	exon6	c.T545C	p.L182P	ATGCCCTTTTGGA	.	50	3	71	1	.	0	C	6692962	T	C	6692962	3	2	5	1	0	0	0	0	1	0	0	0	15905	1624	56	4		4	THAP3	1	6692962	Missense_Mutation	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09		6692962	242557659	1	534											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22915663	22915663	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acctgagccccgagccccgcCgggccgctgtggtcaacatc	6	5	12	18	4	1	1	1	1	0	0	2	2	1	1	7	2	3	1	7	2	1	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_020526	exon5	c.C1279T	p.R427W	CCCCGCCGGGCCG	.	57	11	77	0	.	.	T	22915663	C	T	22915663	3	4	5	1	0	0	0	0	1	0	0	0	5201	643	23	1	1297	1	EPHA8	1	22915663	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	16222701	22915663	226334958	2	535											
HMGCL	3155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	24140684	24140684	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctctgactcacccccGcacagaaatattggctgact	10	10	8	13	1	2	3	1	2	1	1	2	3	2	3	2	1	1	3	2	1	2	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_000191	exon5	c.C493T	p.R165W	ACCCCCGCACAGA	.	20	5	38	0	.	.	A	24140684	G	A	24140684	3	1	5	1	0	0	0	0	1	0	0	0	7270	1086	38	1	504	1	HMGCL	1	24140684	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1225021	24140684	225109937	3	536											
GPN2	54707	broad.mit.edu	37	chr1	27210710	27210710	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atggcttccaagcttcgctgCtcttgggctctgaaacagta	8	12	10	11	1	2	1	0	1	2	0	4	1	3	1	1	2	3	6	1	2	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	GPN2,bladder,carcinoma,-2,1	GPN2	NM_018066	exon4	c.G801T	p.E267D	TCGCTGCTCTTGG	.	13	3	26	0	.	18	A	27210710	C	A	27210710	3	1	5	1	0	0	0	0	1	0	0	0	6658	796	28	3	139	3	GPN2	1	27210710	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	3070026	27210710	222039911	4	537											
GJA9	81025	hgsc.bcm.edu;bcgsc.ca	37	chr1	39340249	39340249	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagatctgtgggaacccGcctaccaatgagattgttcg	10	10	11	10	2	1	3	0	2	1	2	2	5	1	4	3	1	2	1	3	1	4	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_030772	exon2	c.C1522A	p.R508R	GAACCCGCCTACC	.	70	4	67	0	.	.	T	39340249	G	T	39340249	2	4	5	1	0	0	0	0	0	0	0	1	6448	1086	38	2		2	GJA9	1	39340249	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	12129539	39340249	209910372	5	538											
MACF1	23499	broad.mit.edu	37	chr1	39798190	39798190	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagctatattaatgtgcaaaAtggacagaggctgcttctgt	12	12	10	7	0	1	1	0	0	1	1	1	2	1	2	0	2	3	4	0	2	5	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	MACF1	.	.	.	.	TGCAAAATGGACA	.	20	3	23	0	.	909	G	39798190	A	G	39798190	3	3	5	1	0	0	0	0	1	0	0	0	9190	101	4	4	6021	4	MACF1	1	39798190	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	457941	39798190	209452431	6	539											
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	57409394	57409394	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atttcattcagaatacctctGcatttgcctacagacacacc	12	12	4	13	0	3	2	2	0	1	2	3	2	3	2	3	0	4	1	3	0	3	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_000066	exon8	c.C1209T	p.C403C	ACCTCTGCATTTG	.	62	12	56	0	.	.	A	57409394	G	A	57409394	2	1	5	1	0	0	0	0	0	0	0	1	2433	1311	46	3		3	C8B	1	57409394	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	17611204	57409394	191841227	7	540											
GBP1	2633	broad.mit.edu	37	chr1	89528730	89528730	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttgctcatgccactcacccTttttctttccagccagcttg	5	16	5	15	0	3	0	2	0	1	0	4	0	4	0	4	0	4	2	4	0	0	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	GBP1,middle_lobe,carcinoma,0,1	GBP1	NM_002053	exon2	c.A188G	p.K63R	TCACCCTTTTTCT	.	92	3	94	1	.	68	C	89528730	T	C	89528730	3	2	5	1	0	0	0	0	1	0	0	0	6313	1609	56	4	1630	4	GBP1	1	89528730	Missense_Mutation	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	32119336	89528730	159721891	8	541											
PSMA5	5686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	109964511	109964511	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctcaatggcatattccacttGaaataatcttccttcgggag	11	13	7	10	1	2	1	1	1	1	0	5	2	4	2	2	2	0	1	2	2	4	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_002790	exon2	c.C67T	p.Q23X	CCACTTGAAATAA	.	57	15	64	0	.	.	A	109964511	G	A	109964511	4	1	5	1	0	0	0	0	0	1	0	0	12719	1299	45	3	690	3	PSMA5	1	109964511	Nonsense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	20435781	109964511	139286110	9	542											
PEX11B	8799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145518133	145518133	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aaagagctgttcacctatcaGatgttgtcctgagattctgc	10	13	9	9	0	3	3	2	1	1	3	4	4	4	3	2	0	2	3	2	0	2	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_003846	exon3	c.G235A	p.D79N	CTATCAGATGTTG	.	51	17	48	0	.	.	A	145518133	G	A	145518133	3	1	5	1	0	0	0	0	1	0	0	0	11786	942	33	3	263	3	PEX11B	1	145518133	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	35553622	145518133	103732488	10	543											
KLHL20	27252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	173743534	173743534	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gctgtgttaggagggttcttAtatgctgtaggtggctctga	6	15	15	5	0	2	1	0	1	2	0	2	2	2	2	0	4	1	6	0	4	4	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_014458	exon9	c.A1386G	p.L462L	GTTCTTATATGCT	.	110	6	94	0	.	.	G	173743534	A	G	173743534	2	3	5	1	0	0	0	0	0	0	0	1	8418	446	16	4		4	KLHL20	1	173743534	Silent	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	28225401	173743534	75507087	11	544											
RFWD2	64326	hgsc.bcm.edu	37	chr1	175956191	175956191	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaacttaaaagttagcaaaGtcttagaaagtcctttatag	17	12	6	6	0	1	1	0	0	1	1	2	1	2	1	1	0	2	2	1	0	9	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_022457	exon18	c.C2021A	p.T674N	AGCAAAGTCTTAG	.	44	4	48	0	.	.	T	175956191	G	T	175956191	3	4	5	1	0	0	0	0	1	0	0	0	13312	1029	36	3	186	3	RFWD2	1	175956191	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	2212657	175956191	73294430	12	545											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	190068073	190068073	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cggtgttgcaggtgccgcagCgggtgcggttgtctggtgcg	2	10	20	9	5	1	0	0	0	1	0	1	0	1	0	1	5	5	4	1	5	0	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_199051	exon8	c.G1376A	p.R459H	CCGCAGCGGGTGC	.	16	6	19	0	.	.	T	190068073	C	T	190068073	3	4	5	1	0	0	0	0	1	0	0	0	5629	768	27	1	928	1	FAM5C	1	190068073	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	14111882	190068073	59182548	13	546											
RD3	343035	broad.mit.edu;bcgsc.ca	37	chr1	211652604	211652604	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctccaggacctcctgcagcAccgagcggaagagctgggac	9	5	13	14	2	1	1	0	0	1	1	3	5	2	4	4	3	4	3	4	3	1	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	RD3	NM_183059	exon3	c.T362C	p.V121A	TGCAGCACCGAGC	.	20	4	30	0	.	26	G	211652604	A	G	211652604	3	3	5	1	0	0	0	0	1	0	0	0	13239	159	6	4	229	4	RD3	1	211652604	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	21584531	211652604	37598017	14	547											
HIST3H2A	92815	hgsc.bcm.edu	37	chr1	228645259	228645259	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gctcctcgtcgttgcggatgGccagctgcaggtggcgcggg	3	8	18	12	5	0	0	0	0	0	0	3	1	1	1	2	5	3	4	2	5	0	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_033445	exon1	c.C260T	p.A87V	CGGATGGCCAGCT	.	81	4	75	0	.	.	A	228645259	G	A	228645259	3	1	5	1	0	0	0	0	1	0	0	0	7223	1203	42	3	136	3	HIST3H2A	1	228645259	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	16992655	228645259	20605362	15	548											
AAK1	22848	hgsc.bcm.edu	37	chr2	69741780	69741780	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgctgctgctgctgCtggtagaaattctgcattag	6	15	12	8	0	1	1	0	0	1	1	1	1	1	1	0	1	7	9	0	1	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	AAK1_ENST00000409085,NS,carcinoma,0,2	AAK1_ENST00000409085	NM_014911	exon13	c.G1599C	p.Q533H	CTGCTGCTGGTAG	.	45	3	43	1	.	0	G	69741780	C	G	69741780	3	3	5	1	0	0	0	0	1	0	0	0	16	796	28	5	1326	5	AAK1	2	69741780	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09		69741780	173457593	16	549											
ADD2	119	hgsc.bcm.edu	37	chr2	70933527	70933527	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgaggcagcctcggggaccGtctcttcgctcattttcccg	4	10	12	15	5	2	0	1	0	1	0	6	2	3	1	3	3	1	2	3	3	0	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	ADD2_ENST00000264436,colon,carcinoma,0,2	ADD2_ENST00000264436	NM_001185055	exon2	c.C62T	p.T21M	GGGACCGTCTCTT	.	39	2	62	0	.	0	A	70933527	G	A	70933527	3	1	5	1	0	0	0	0	1	0	0	0	304	1145	40	1	2403	1	ADD2	2	70933527	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1191747	70933527	172265846	17	550											
KRCC1	51315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	88328025	88328027	+	In_Frame_Del	DEL	TAA	TAA	-																															gcctctggctttctgtacttTaatataatcttcaagttcat																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	TAA	TAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_016618	exon4	c.57_59del	p.19_20del	GTACTTTAATATA	.	43	10	32	0	.	.	-	88328027	TAA	-	88328025	7	5	5	1	0	1	0	1	0	0	0	0	8484	1763	61	0	725	0	KRCC1	2	88328025	In_Frame_Del	DEL	TAA	TCGA-3X-AAVE-01A-11D-A417-09	17394498	88328025	154871348	18	551											
LMAN2L	81562	bcgsc.ca	37	chr2	97373516	97373516	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatggagcttttcctcttctGgggttctctccactgtcagt	4	16	10	11	0	4	0	1	0	3	0	7	2	6	1	2	3	1	2	2	3	0	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	LMAN2L	NM_001142292	exon8	c.C872A	p.P291Q	TCTTCTGGGGTTC	.	48	4	64	0	.	27	T	97373516	T	T	97373516	3	4	5	1	0	0	0	0	1	0	0	0	8880	1348	47	3	215	3	LMAN2L	2	97373516	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	9045491	97373516	145825857	19	552											
GPR17	2840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128407628	128407628	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctggatccagaaagcccccAagagagatgctgaaactctc	13	6	10	12	0	1	4	0	1	1	3	3	6	2	5	3	1	3	2	3	1	3	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_005291	exon2	c.A42G	p.P14P	GCCCCCAAGAGAG	.	88	27	103	0	.	.	G	128407628	A	G	128407628	2	3	5	1	0	0	0	0	0	0	0	1	6707	117	5	4		4	GPR17	2	128407628	Silent	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	31034112	128407628	114791745	20	553											
GPD2	2820	hgsc.bcm.edu;broad.mit.edu	37	chr2	157427724	157427724	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgcctggcctttctaaatGtccaggcagcagaggaagcc	9	8	11	13	1	1	1	0	0	1	1	3	2	2	2	4	3	2	2	4	3	3	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	GPD2,right_lower_lobe,carcinoma,0,1	GPD2	NM_001083112	exon13	c.G1687T	p.V563F	CTAAATGTCCAGG	.	88	4	87	0	.	0	T	157427724	G	T	157427724	3	4	5	1	0	0	0	0	1	0	0	0	6646	1377	48	3	1733	3	GPD2	2	157427724	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	29020096	157427724	85771649	21	554											
SCN2A	6326	broad.mit.edu	37	chr2	166231253	166231253	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgaatgtacttctggtttGtctgatcttttggctaatat	8	19	8	6	0	3	2	0	2	3	0	3	2	3	2	0	2	1	3	0	2	4	7	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	SCN2A	NM_001040143	exon21	c.G4031T	p.C1344F	TGGTTTGTCTGAT	.	54	4	56	1	.	589	T	166231253	G	T	166231253	3	4	5	1	0	0	0	0	1	0	0	0	13970	1377	48	3	4209	3	SCN2A	2	166231253	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	8803529	166231253	76968120	22	555											
UBR3	130507	hgsc.bcm.edu	37	chr2	170780438	170780438	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattttgtttgtttattccaGccagcacctaaccaagtcac	10	14	5	12	0	1	0	1	0	0	0	2	0	2	0	4	0	3	3	4	0	3	7	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_172070	exon12	c.1867-1G>T	.	ATTCCAGCCAGCA	.	93	3	67	0	.	.	T	170780438	G	T	170780438	5	4	5	1	0	0	0	0	0	0	1	0	16964	985	34	3	1912	3	UBR3	2	170780438	Splice_Site	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	4549185	170780438	72418935	23	556											
ZAK	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	174085956	174085956	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggagtcaaacagtgcagagAtgtcatgtcagatcacagca	15	7	11	8	0	4	2	4	0	0	2	4	4	4	3	0	1	3	2	0	1	1	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_133646	exon12	c.A1066T	p.M356L	GCAGAGATGTCAT	.	28	5	43	0	.	.	T	174085956	A	T	174085956	3	4	5	1	0	0	0	0	1	0	0	0	17572	333	12	5	1108	5	ZAK	2	174085956	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	3305518	174085956	69113417	24	557											
TTN	7273	hgsc.bcm.edu	37	chr2	179569097	179569097	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gtgcaagtctggccttctttCagagtcacatcctgaagatg	9	12	10	10	0	4	3	2	1	2	2	5	3	5	3	2	1	1	1	2	1	2	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	TTN_ENST00000342992,NS,carcinoma,0,1	TTN_ENST00000342992	NM_001267550	exon106	c.G30000A	p.L10000L	TTCTTTCAGAGTC	.	48	2	36	0	.	0	T	179569097	C	T	179569097	2	4	5	1	0	0	0	0	0	0	0	1	16797	813	29	3		3	TTN	2	179569097	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	5483141	179569097	63630276	25	558											
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198950711	198950711	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aatgtttgcagcctggatatCggcatgttcccctgcgttct	6	14	10	11	2	1	0	0	0	1	0	3	1	2	1	3	2	3	5	3	2	2	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_006226	exon2	c.C2470T	p.R824W	GGATATCGGCATG	.	67	14	87	0	.	.	T	198950711	C	T	198950711	3	4	5	1	0	0	0	0	1	0	0	0	12087	875	31	1	2476	1	PLCL1	2	198950711	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	19381614	198950711	44248662	26	559											
CPS1	1373	hgsc.bcm.edu	37	chr2	211464283	211464283	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggccagacagctctgaactGtggtgagttcttataagctt	9	13	11	8	0	2	3	0	2	2	1	2	3	2	3	1	2	3	3	1	2	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	CPS1,NS,carcinoma,0,1	CPS1	NM_001122633	exon15	c.G1565T	p.C522F	TGAACTGTGGTGA	.	42	2	40	0	.	0	T	211464283	G	T	211464283	3	4	5	1	0	0	0	0	1	0	0	0	3846	1377	48	3	1623	3	CPS1	2	211464283	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	12513572	211464283	31735090	27	560											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	225704784	225704784	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgaatcttttccacattcaaTaagttctgtagtaaattggc	12	16	6	7	0	3	1	1	1	2	0	4	1	4	1	1	1	0	3	1	1	6	8	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_014689	exon24	c.A2667T	p.L889F	ATTCAATAAGTTC	.	73	6	67	0	.	.	A	225704784	T	A	225704784	3	1	5	1	0	0	0	0	1	0	0	0	4712	1403	49	5	4025	5	DOCK10	2	225704784	Missense_Mutation	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	14240501	225704784	17494589	28	561											
ITGA9	3680	hgsc.bcm.edu	37	chr3	37670693	37670693	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcggagggtgcaggacGtcatcagcccgatcgtgttt	7	10	14	10	4	3	0	3	0	0	0	4	3	3	2	1	3	3	2	1	3	0	2	rs369282174		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	ITGA9,NS,carcinoma,0,1	ITGA9	NM_002207	exon16	c.G1705A	p.V569I	CAGGACGTCATCA	.	40	2	45	0	.	0	A	37670693	G	A	37670693	3	1	5	1	0	0	0	0	1	0	0	0	7927	1145	40	1	1767	1	ITGA9	3	37670693	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		37670693	160351737	29	562											
TRAK1	22906	hgsc.bcm.edu	37	chr3	42260987	42260987	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgttcctcccaatttagcGcaccatcctgggaagtgcat	8	13	8	12	1	0	0	0	0	0	0	3	1	3	1	4	1	2	3	4	1	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	TRAK1_ENST00000543338,lower_third,carcinoma,0,2	TRAK1_ENST00000543338	NM_001042646	exon15	c.G1965A	p.A655A	TTTAGCGCACCAT	.	43	2	58	0	.	0	A	42260987	G	A	42260987	2	1	5	1	0	0	0	0	0	0	0	1	16510	1101	38	1		1	TRAK1	3	42260987	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	4590294	42260987	155761443	30	563											
BAP1	8314	broad.mit.edu	37	chr3	52436651	52436667	+	Frame_Shift_Del	DEL	TGAACTCATCGTAGTTG	TGAACTCATCGTAGTTG	-																															catggagataaaggtgcagaTgaactcatcgtagttgtggg																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	BAP1	NM_004656	exon16	c.2007_2023del	p.669_675del	TGCAGATGAACTC	.	9	4	12	0	.	371	-	52436667	TGAACTCATCGTAGTTG	-	52436651	7	5	5	1	0	1	0	1	0	0	0	0	1309	1464	51	0	174	0	BAP1	3	52436651	Frame_Shift_Del	DEL	TGAACTCATCGTAGTTG	TCGA-3X-AAVE-01A-11D-A417-09	10175664	52436651	145585779	31	564											
CACNA1D	776	hgsc.bcm.edu	37	chr3	53810928	53810928	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtcactctgcttcgacGcatccagcctcccctggggt	4	11	11	15	2	2	0	1	0	1	0	5	1	4	0	4	3	2	2	4	3	0	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	CACNA1D_ENST00000350061,NS,carcinoma,0,2	CACNA1D_ENST00000350061	NM_000720	exon38	c.G4592A	p.R1531H	TTCGACGCATCCA	.	72	3	77	0	.	0	A	53810928	G	A	53810928	3	1	5	1	0	0	0	0	1	0	0	0	2559	1087	38	1	4850	1	CACNA1D	3	53810928	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1374277	53810928	144211502	32	565											
KBTBD8	84541	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	67054577	67054577	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtggtaaaatgtatgcaatcGgaggtcgtgtttatgaaggt	11	13	14	3	2	0	1	0	1	0	0	2	2	0	2	0	4	1	4	0	4	6	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	KBTBD8	NM_032505	exon3	c.G1186A	p.G396R	GCAATCGGAGGTC	.	38	13	72	1	.	101	A	67054577	G	A	67054577	3	1	5	1	0	0	0	0	1	0	0	0	8043	1117	39	1	1196	1	KBTBD8	3	67054577	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	13243649	67054577	130967853	33	566											
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu	37	chr3	194080098	194080098	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagcagcaacagccgaCgcaggcagccagggagcagg	11	2	15	13	2	0	0	0	0	0	0	0	2	0	1	2	3	7	6	2	3	1	1	rs372437949		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	LRRC15_ENST00000439944,NS,carcinoma,0,2	LRRC15_ENST00000439944	NM_001135057	exon3	c.G1693A	p.V565I	AGCCGACGCAGGC	.	18	3	20	0	.	0	T	194080098	C	T	194080098	3	4	5	1	0	0	0	0	1	0	0	0	9015	536	19	1	74	1	LRRC15	3	194080098	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	127025521	194080098	3942332	34	567											
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	20736336	20736336	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtactgtcccccggagcaaaAtggaaagacctttgatgaaa	14	8	10	9	1	0	3	0	2	0	1	1	5	1	5	3	2	2	2	3	2	5	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_025221	exon5	c.T392C	p.I131T	AGCAAAATGGAAA	.	102	24	100	0	.	.	G	20736336	A	G	20736336	3	3	5	1	0	0	0	0	1	0	0	0	8086	101	4	4	316	4	KCNIP4	4	20736336	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09		20736336	170417940	35	568											
ARHGAP24	83478	hgsc.bcm.edu	37	chr4	86921760	86921760	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cgagcgagcaaaagaagatgCcgagaaaagaaatgacatgc	19	3	12	7	3	0	5	0	1	0	4	0	8	0	5	1	0	4	1	1	0	6	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001025616	exon10	c.C2132T	p.A711V	AAGATGCCGAGAA	.	81	3	103	0	.	.	T	86921760	C	T	86921760	3	4	5	1	0	0	0	0	1	0	0	0	870	739	26	3	2282	3	ARHGAP24	4	86921760	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	66185424	86921760	104232516	36	569											
TMEM184C	55751	bcgsc.ca	37	chr4	148539206	148539206	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgcggttcccctatgCgtgtgggaattacagaaact	8	12	13	8	2	0	1	0	0	0	1	1	2	1	2	2	3	4	2	2	3	4	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	TMEM184C	NM_018241	exon1	c.C99T	p.C33C	CCTATGCGTGTGG	.	67	4	94	0	.	25	T	148539206	T	T	148539206	2	4	5	1	0	0	0	0	0	0	0	1	16166	776	27	1		1	TMEM184C	4	148539206	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	61617446	148539206	42615070	37	570											
STOX2	56977	hgsc.bcm.edu	37	chr4	184932087	184932087	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caagaggaaagagatatttaGcaaagacacactgttcaaac	19	7	8	7	0	1	3	1	0	0	3	1	5	1	4	0	1	2	2	0	1	6	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	STOX2_ENST00000308497,colon,carcinoma,0,1	STOX2_ENST00000308497	NM_020225	exon3	c.G2096T	p.S699I	TATTTAGCAAAGA	.	49	2	45	0	.	0	T	184932087	G	T	184932087	3	4	5	1	0	0	0	0	1	0	0	0	15376	971	34	3	2106	3	STOX2	4	184932087	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	36392881	184932087	6222189	38	571											
DNAH5	1767	bcgsc.ca	37	chr5	13830277	13830277	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agagaactggtagatcaataCggttaaattcatcaaaacaa	19	9	7	6	1	3	2	3	0	0	2	3	3	3	2	0	2	3	2	0	2	9	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	DNAH5,colon,carcinoma,-1,1	DNAH5	NM_001369	exon37	c.G6107A	p.R2036H	TCAATACGGTTAA	.	64	4	39	0	.	868	T	13830277	T	T	13830277	3	4	5	1	0	0	0	0	1	0	0	0	4632	536	19	1	7939	1	DNAH5	5	13830277	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09		13830277	167084983	39	572											
NIPBL	25836	hgsc.bcm.edu;bcgsc.ca	37	chr5	37007576	37007576	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acagacacaacaattcttcaGgtaagattttttggtaagca	15	12	7	7	0	2	2	1	0	1	2	2	2	2	2	0	2	2	3	0	2	4	7	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_015384	exon18	c.G4239T	p.Q1413H	TCTTCAGGTAAGA	.	70	4	59	0	.	.	T	37007576	G	T	37007576	3	4	5	1	0	0	0	0	1	0	0	0	10475	1014	35	3	4305	3	NIPBL	5	37007576	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	23177299	37007576	143907684	40	573											
SV2C	22987	hgsc.bcm.edu	37	chr5	75428097	75428097	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gaggtgtttgtcgttggcttCgtgttacccagtgctgagac	5	14	14	8	2	0	1	0	1	0	1	2	3	0	1	1	2	2	5	1	2	1	4	rs370011561		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	SV2C,NS,adenocarcinoma,0,3	SV2C	NM_014979	exon2	c.C522T	p.F174F	TGGCTTCGTGTTA	.	48	2	39	0	.	0	T	75428097	C	T	75428097	2	4	5	1	0	0	0	0	0	0	0	1	15475	883	31	1		1	SV2C	5	75428097	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	38420521	75428097	105487163	41	574											
SLC36A1	206358	bcgsc.ca	37	chr5	150853233	150853233	+	Splice_Site	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttttgctttctgtctttcaGaggatcccagaccccagcca	7	13	8	13	0	3	2	1	0	2	2	4	3	4	3	4	1	2	2	4	1	0	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	SLC36A1	NM_078483	exon8	c.724-1G>T	.	CTTTCAGAGGATC	.	49	4	48	0	.	50	T	150853233	T	T	150853233	5	4	5	1	0	0	0	0	0	0	1	0	14648	956	33	3	749	3	SLC36A1	5	150853233	Splice_Site	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	75425136	150853233	30062027	42	575											
KCNMB1	3779	hgsc.bcm.edu	37	chr5	169805956	169805956	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggccgtctggtaattgtccaCgctgcctgggatgtaggagc	6	10	15	10	2	1	0	0	0	1	0	2	2	2	2	3	4	2	3	3	4	2	3	rs2301149	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	KCNMB1,NS,carcinoma,0,1	KCNMB1	NM_004137	exon4	c.G328A	p.E110K	TGTCCACGCTGCC	.	59	3	53	0	.	0	T	169805956	C	T	169805956	3	4	5	1	0	0	0	0	1	0	0	0	8118	536	19	1	251	1	KCNMB1	5	169805956	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	18952723	169805956	11109304	43	576											
BTN2A2	10385	ucsc.edu	37	chr6	26393052	26393052	+	Missense_Mutation	SNP	A	A	T																															catgtccccgttcagcctttActgtgcctgtgaggcccttc																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	BTN2A2	NM_006995	exon8	c.A1429T	p.T477S	GCCTTTACTGTGC	.	41	8	26	2	.	87	T	26393052	A	T	26393052	3	4	5	1	0	0	0	0	1	0	0	0	1564	391	14	5	1455	5	BTN2A2	6	26393052	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09		26393052	144722015	44	577	1	2									
BTN2A2	10385	ucsc.edu	37	chr6	26393054	26393054	+	Silent	SNP	T	T	C																															tgtccccgttcagcctttacTgtgcctgtgaggcccttctt																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	BTN2A2	NM_006995	exon8	c.T1431C	p.T477T	CTTTACTGTGCCT	.	40	8	26	2	.	87	C	26393054	T	C	26393054	2	2	5	1	0	0	0	0	0	0	0	1	1564	1567	55	4		4	BTN2A2	6	26393054	Silent	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	2	26393054	144722013	45	578	1	2									
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31855598	31855598	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccttttccagggcctccCggcctggccccagtggcagc	3	7	14	17	1	0	0	0	0	0	0	2	0	2	0	7	5	1	1	7	5	0	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_006709	exon14	c.G1886A	p.R629Q	GCCTCCCGGCCTG	.	22	6	32	0	.	.	T	31855598	C	T	31855598	3	4	5	1	0	0	0	0	1	0	0	0	5010	652	23	1	1806	1	EHMT2	6	31855598	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	5462544	31855598	139259469	46	579											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	64394977	64394977	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accaaaattcaaaacagttgAatgctatagaaagtactaaa	21	9	5	6	0	1	2	1	1	0	1	1	2	1	2	1	0	3	3	1	0	11	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_015153	exon3	c.A1354C	p.N452H	CAGTTGAATGCTA	.	73	18	78	0	.	.	C	64394977	A	C	64394977	3	2	5	1	0	0	0	0	1	0	0	0	11884	246	9	4	1364	4	PHF3	6	64394977	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	32539379	64394977	106720090	47	580											
ARID1B	57492	hgsc.bcm.edu	37	chr6	157469954	157469954	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggaaatatgagcagcatGacccccagttctcctggcat	10	9	9	13	0	1	2	0	2	1	0	2	3	1	3	4	2	2	4	4	2	2	2	rs146077641	alternate_allele	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	ARID1B,NS,carcinoma,0,1	ARID1B	NM_020732	exon9	c.G2748T	p.M916I	CAGCATGACCCCC	.	32	3	42	1	.	0	T	157469954	G	T	157469954	3	4	5	1	0	0	0	0	1	0	0	0	911	1290	45	3	2782	3	ARID1B	6	157469954	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	93074977	157469954	13645113	48	581											
SNX9	51429	hgsc.bcm.edu	37	chr6	158288657	158288716	+	Frame_Shift_Del	DEL	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	-																															aaggagaaatcatcacaatcAcaaatccggtaagagaactg																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_016224	exon2	c.90_99del	p.30_33del	ACAATCACAAATC	.	94	0	71	0	.	.	-	158288716	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	-	158288657	7	5	5	1	0	1	0	1	0	0	0	0	14963	159	6	0	97	0	SNX9	6	158288657	Frame_Shift_Del	DEL	ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA	TCGA-3X-AAVE-01A-11D-A417-09	818703	158288657	12826410	49	582											
PNLDC1	154197	bcgsc.ca	37	chr6	160225658	160225658	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gatatcctgactgggaactgGagagttcgcaggtatggcct	9	10	14	8	1	0	2	0	1	0	1	2	5	1	3	2	4	1	3	2	4	3	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	PNLDC1	NM_173516	exon6	c.G417T	p.W139C	GAACTGGAGAGTT	.	70	5	76	0	.	66	T	160225658	T	T	160225658	3	4	5	1	0	0	0	0	1	0	0	0	12196	1183	41	3	435	3	PNLDC1	6	160225658	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1937001	160225658	10889409	50	583											
ZNF12	7559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6731851	6731851	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttcagatccattccacttaTagggcttttcttccatgtga	8	17	6	10	0	2	2	1	1	1	1	5	2	5	2	3	1	0	1	3	1	2	7	rs367716418		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_016265	exon5	c.A722G	p.Y241C	CACTTATAGGGCT	.	57	8	54	0	.	.	C	6731851	T	C	6731851	3	2	5	1	0	0	0	0	1	0	0	0	17776	1406	49	4	1375	4	ZNF12	7	6731851	Missense_Mutation	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09		6731851	152406812	51	584											
FERD3L	222894	hgsc.bcm.edu	37	chr7	19184752	19184752	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcttccgcgctcctcttcCtcctcctcttctccgtcccc	0	14	3	24	3	4	0	0	0	4	0	11	0	10	0	9	0	0	1	9	0	0	3	rs73079402		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	FERD3L,NS,carcinoma,0,1	FERD3L	NM_152898	exon1	c.G234A	p.E78E	CTCTTCCTCCTCC	.	14	2	25	0	.	0	T	19184752	C	T	19184752	2	4	5	1	0	0	0	0	0	0	0	1	5849	680	24	3		3	FERD3L	7	19184752	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	12452901	19184752	139953911	52	585											
ITGB8	3696	hgsc.bcm.edu;bcgsc.ca	37	chr7	20441344	20441344	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctttttcctcctaaatttagGttcttttcaatgtaacagtt	9	20	4	8	0	2	0	1	0	1	0	4	0	4	0	2	1	1	3	2	1	5	10	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_002214	exon10	c.G1282T	p.V428F	ATTTAGGTTCTTT	.	48	4	45	0	.	.	T	20441344	G	T	20441344	3	4	5	1	0	0	0	0	1	0	0	0	7945	1275	44	3	1320	3	ITGB8	7	20441344	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1256592	20441344	138697319	53	586											
IFRD1	3475	hgsc.bcm.edu	37	chr7	112102177	112102178	+	Frame_Shift_Ins	INS	-	-	A																															catatcagctctcttcttgcINSatggacactactgctgacca																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001007245	exon8	c.740_741insA	p.A247fs	TTCTTGCATGGAC	.	85	18	102	0	.	.	A	112102178	-	A	112102177	7	5	5	1	0	1	1	0	0	0	0	0	7597	710	25	0	766	0	IFRD1	7	112102177	Frame_Shift_Ins	INS	-	TCGA-3X-AAVE-01A-11D-A417-09	91660833	112102177	47036486	54	587											
NOS3	4846	broad.mit.edu	37	chr7	150704218	150704218	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgttcgggctcggctcccggGcatacccccacttctgcgcc	3	9	11	18	4	1	0	0	0	1	0	4	0	2	0	4	3	2	4	4	3	1	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	NOS3,NS,carcinoma,-2,1	NOS3	NM_000603	exon17	c.G1966A	p.A656T	TCCCGGGCATACC	.	43	3	50	0	.	131	A	150704218	G	A	150704218	3	1	5	1	0	0	0	0	1	0	0	0	10591	1203	42	3	2310	3	NOS3	7	150704218	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	38602041	150704218	8434445	55	588											
DLGAP2	9228	hgsc.bcm.edu	37	chr8	1616531	1616531	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttacaagaaaacgcccccacCggtgccccctcggaccacct	10	5	7	19	3	0	1	0	0	0	1	1	2	0	2	7	2	3	0	7	2	4	1	rs370388753		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_004745	exon6	c.C1607T	p.P536L	CCCCACCGGTGCC	.	93	5	110	0	.	.	T	1616531	C	T	1616531	3	4	5	1	0	0	0	0	1	0	0	0	4588	652	23	1	1625	1	DLGAP2	8	1616531	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09		1616531	144747491	56	589											
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	37555950	37555950	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgccgccgccgccgccGccgccgccgcctcctgccat	2	3	12	24	9	0	0	0	0	0	0	1	0	1	0	11	0	2	1	11	0	0	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_025069	exon2	c.G1531A	p.A511T	GCCGCCGCCGCCG	.	35	9	30	0	.	.	A	37555950	G	A	37555950	3	1	5	1	0	0	0	0	1	0	0	0	18162	1087	38	1	1537	1	ZNF703	8	37555950	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	35939419	37555950	108808072	57	590											
BAI1	575	hgsc.bcm.edu	37	chr8	143570419	143570419	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgaagcatccgtgtttGtggtgggcaccgtgctctac	6	11	13	11	3	1	1	0	1	1	0	2	2	2	1	3	2	3	4	3	2	2	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	BAI1,right_lower_lobe,carcinoma,0,1	BAI1	NM_001702	exon14	c.G2476T	p.V826L	GTGTTTGTGGTGG	.	40	2	40	0	.	0	T	143570419	G	T	143570419	3	4	5	1	0	0	0	0	1	0	0	0	1296	1377	48	3	2530	3	BAI1	8	143570419	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	106014469	143570419	2793603	58	591											
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	21971003	21971003	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atcgcgatggcccagctcctCagccaggtccacgggcagac	8	5	12	16	3	1	1	1	0	0	1	4	2	3	1	4	3	2	2	4	3	0	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	CDKN2A_ENST00000498124,bladder,carcinoma,0,13	CDKN2A_ENST00000498124	NM_058195	exon2	c.G398C	p.X133S	GCTCCTCAGCCAG	.	23	9	25	0	.	0	G	21971003	C	G	21971003	3	3	5	1	0	0	0	0	1	0	0	0	3183	838	29	5	123	5	CDKN2A	9	21971003	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09		21971003	119242428	59	592											
TLE1	7088	hgsc.bcm.edu	37	chr9	84226713	84226713	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgcccgtaggccaccacggCggccgcggcggctgcggcgc	3	2	18	18	9	0	0	0	0	0	0	0	0	0	0	4	6	1	2	4	6	1	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	TLE1,NS,carcinoma,0,1	TLE1	NM_005077	exon13	c.G1225A	p.A409T	CCACGGCGGCCGC	.	56	2	65	0	.	0	T	84226713	C	T	84226713	3	4	5	1	0	0	0	0	1	0	0	0	15998	768	27	1	1119	1	TLE1	9	84226713	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	62255710	84226713	56986718	60	593											
COL27A1	85301	hgsc.bcm.edu	37	chr9	116931158	116931158	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cccccaccgcccagcacccgGcccctacctcctaccaccag	7	3	5	26	2	0	0	0	0	0	0	1	0	1	0	11	1	3	1	11	1	2	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	COL27A1,NS,carcinoma,0,1	COL27A1	NM_032888	exon3	c.G1323T	p.R441R	CACCCGGCCCCTA	.	42	2	52	0	.	0	T	116931158	G	T	116931158	2	4	5	1	0	0	0	0	0	0	0	1	3708	1190	42	3		3	COL27A1	9	116931158	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	32704445	116931158	24282273	61	594											
SPTAN1	6709	hgsc.bcm.edu	37	chr9	131348107	131348107	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cactgaaagccaaagcttccCagcgtcggcaggacctggag	11	5	12	13	2	0	1	0	1	0	0	2	3	1	3	3	3	3	2	3	3	2	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	SPTAN1,colon,carcinoma,0,1	SPTAN1	NM_003127	exon19	c.C2641T	p.Q881X	GCTTCCCAGCGTC	.	23	2	35	0	.	0	T	131348107	C	T	131348107	4	4	5	1	0	0	0	0	0	1	0	0	15173	595	21	3	2711	3	SPTAN1	9	131348107	Nonsense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	14416949	131348107	9865324	62	595											
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	138703285	138703285	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttaaactgttttcggtctGagctgtatttatacagtttg	9	18	9	5	1	1	1	0	1	1	0	2	1	1	1	0	1	3	5	0	1	5	8	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_015447	exon17	c.C4679A	p.S1560X	CGGTCTGAGCTGT	.	46	23	59	0	.	.	T	138703285	G	T	138703285	4	4	5	1	0	0	0	0	0	1	0	0	2629	1294	45	3	133	3	CAMSAP1	9	138703285	Nonsense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	7355178	138703285	2510146	63	596											
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	5496410	5496410	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cctcgaagtcgcctagtcaaAtaccctttactgttaaaaga	13	11	6	11	2	1	1	1	0	0	1	3	2	1	1	3	0	2	1	3	0	7	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001047160	exon9	c.A951G	p.K317K	AGTCAAATACCCT	.	55	8	60	0	.	.	G	5496410	A	G	5496410	2	3	5	1	0	0	0	0	0	0	0	1	10385	98	4	4		4	NET1	10	5496410	Silent	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09		5496410	130038337	64	597											
PCDH15	65217	hgsc.bcm.edu	37	chr10	55566583	55566583	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgcattcattttttcagtaGaaaatggcccctttgataat	11	17	6	7	0	2	2	2	1	0	1	2	2	2	2	2	1	1	2	2	1	4	8	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	PCDH15_ENST00000414778,NS,carcinoma,0,1	PCDH15_ENST00000414778	.	p.S1604Y	.	.	TCAGTAGAAAATG	.	38	2	45	0	.	0	T	55566583	G	T	55566583	3	4	5	1	0	0	0	0	1	0	0	0	11558	942	33	3	247	3	PCDH15	10	55566583	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	50070173	55566583	79968164	65	598											
OR51A4	401666	broad.mit.edu	37	chr11	4967989	4967989	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacatgatcaggaggactgaGgactccagtactgagaatcc	13	7	12	9	0	1	3	1	3	0	1	3	8	3	6	2	3	1	1	2	3	2	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	OR51A4	NM_001005329	exon1	c.C342A	p.S114S	GACTGAGGACTCC	.	42	3	58	0	.	73	T	4967989	G	T	4967989	2	4	5	1	0	0	0	0	0	0	0	1	11135	987	35	3		3	OR51A4	11	4967989	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		4967989	130038527	66	599											
OR5D16	390144	broad.mit.edu;bcgsc.ca	37	chr11	55606662	55606662	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcccagaaactctgtgccatGctggtggttgtattgtatgc	7	14	11	9	0	1	1	0	0	1	1	2	1	2	1	2	2	4	4	2	2	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	OR5D16,NS,carcinoma,+2,1	OR5D16	NM_001005496	exon1	c.G435A	p.M145I	TGCCATGCTGGTG	.	60	5	38	0	.	94	A	55606662	G	A	55606662	3	1	5	1	0	0	0	0	1	0	0	0	11203	1319	46	3	437	3	OR5D16	11	55606662	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	50638673	55606662	79399854	67	600											
KCNK4	50801	hgsc.bcm.edu	37	chr11	64064727	64064727	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tcctccctgcgccatggcatCggtcacattgaagccatctt	7	11	8	15	2	2	1	1	1	1	0	5	1	4	1	4	2	2	1	4	2	1	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	KCNK4,rectum,carcinoma,0,1	KCNK4	NM_033310	exon4	c.C450T	p.I150I	TGGCATCGGTCAC	.	26	3	34	0	.	0	T	64064727	C	T	64064727	2	4	5	1	0	0	0	0	0	0	0	1	8112	874	31	1		1	KCNK4	11	64064727	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	8458065	64064727	70941789	68	601											
SNX15	29907	bcgsc.ca	37	chr11	64799964	64799964	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggagacctggcctacacccAccgcaacctcttccgccgcc	7	6	8	20	3	1	1	0	0	1	1	2	2	2	1	8	2	2	1	8	2	2	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	SNX15	NM_147777	exon3	c.A197G	p.H66R	ACACCCACCGCAA	.	46	5	63	0	.	35	G	64799964	G	G	64799964	3	3	5	1	0	0	0	0	1	0	0	0	14940	159	6	4	207	4	SNX15	11	64799964	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	735237	64799964	70206552	69	602											
BIRC2	329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102221620	102221620	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtgatggtggcttgaGgtgttgggaatctggagatg	6	15	18	2	0	1	3	0	2	1	1	1	5	1	4	0	5	0	3	0	5	1	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001256163	exon3	c.G941C	p.R314T	GCTTGAGGTGTTG	.	72	17	91	0	.	.	C	102221620	G	C	102221620	3	2	5	1	0	0	0	0	1	0	0	0	1434	1000	35	5	947	5	BIRC2	11	102221620	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	37421656	102221620	32784896	70	603											
SIK2	23235	hgsc.bcm.edu	37	chr11	111572283	111572283	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaagattccggattccGtatttcatgtcagaaggtaa	13	11	11	6	2	2	2	2	0	0	2	4	5	4	4	2	3	0	2	2	3	5	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_015191	exon6	c.G711A	p.P237P	GATTCCGTATTTC	.	91	4	107	0	.	.	A	111572283	G	A	111572283	2	1	5	1	0	0	0	0	0	0	0	1	14373	1132	40	1		1	SIK2	11	111572283	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	9350663	111572283	23434233	71	604											
PA2G4	5036	hgsc.bcm.edu	37	chr12	56503676	56503676	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttgaagcagcatgtcatcGatggagaaaaaaccattatc	16	9	9	7	1	1	2	1	1	0	1	3	4	1	2	1	1	3	3	1	1	5	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	PA2G4,NS,carcinoma,0,1	PA2G4	NM_006191	exon7	c.G586T	p.D196Y	GTCATCGATGGAG	.	42	2	33	0	.	0	T	56503676	G	T	56503676	3	4	5	1	0	0	0	0	1	0	0	0	11408	1058	37	2	612	2	PA2G4	12	56503676	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		56503676	77348219	72	605											
POC1B	282809	broad.mit.edu	37	chr12	89891025	89891025	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtggagaaaactgcacGctggttacaacatccttgtg	11	10	10	10	1	0	1	0	0	0	1	1	2	1	1	2	2	4	3	2	2	4	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	POC1B	NM_172240	exon3	c.C195A	p.S65R	CTGCACGCTGGTT	.	53	3	40	0	.	41	T	89891025	G	T	89891025	3	4	5	1	0	0	0	0	1	0	0	0	12224	1078	38	2	1281	2	POC1B	12	89891025	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	33387349	89891025	43960870	73	606											
GNPTAB	79158	hgsc.bcm.edu	37	chr12	102147186	102147186	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gcatatgaaggaaacggtttCgatactctcttggcagttca	11	12	10	8	2	2	1	1	1	1	0	4	3	2	2	0	3	2	4	0	3	4	5	rs141007019	bycluster	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	GNPTAB,NS,carcinoma,0,3	GNPTAB	NM_024312	exon19	c.G3566A	p.R1189Q	CGGTTTCGATACT	.	46	2	40	0	0.000	0	T	102147186	C	T	102147186	3	4	5	1	0	0	0	0	1	0	0	0	6587	884	31	1	216	1	GNPTAB	12	102147186	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	12256161	102147186	31704709	74	607											
NT5DC3	51559	hgsc.bcm.edu;bcgsc.ca	37	chr12	104171615	104171615	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ttttgcccttggctacttggCctgggcctcctgcaggagag	4	12	13	12	0	0	1	0	0	0	1	1	2	1	1	4	4	3	2	4	4	1	5	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001031701	exon14	c.G1639A	p.A547T	ACTTGGCCTGGGC	.	51	4	45	0	.	.	T	104171615	C	T	104171615	3	4	5	1	0	0	0	0	1	0	0	0	10740	739	26	3	11	3	NT5DC3	12	104171615	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	2024429	104171615	29680280	75	608											
POLE	5426	bcgsc.ca	37	chr12	133253969	133253969	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aggtcgttcaacaaggtcatCtcggcgggtgatttctaccg	8	11	12	10	4	4	1	2	1	2	0	6	1	4	1	1	4	2	1	1	4	3	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	POLE	NM_006231	exon8	c.G781A	p.D261N	GGTCATCTCGGCG	.	55	4	56	0	.	416	T	133253969	T	T	133253969	3	4	5	1	0	0	0	0	1	0	0	0	12244	913	32	3	6247	3	POLE	12	133253969	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	29082354	133253969	597926	76	609											
PARP4	143	hgsc.bcm.edu	37	chr13	25064843	25064843	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacctcttttctaaccctgaGaaattcttcagtattctgtt	10	17	4	10	0	5	1	1	1	4	1	5	2	5	1	2	0	2	2	2	0	4	8	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	PARP4,NS,carcinoma,0,1	PARP4	NM_006437	exon10	c.C1177A	p.L393I	CCCTGAGAAATTC	.	70	3	106	0	.	0	T	25064843	G	T	25064843	3	4	5	1	0	0	0	0	1	0	0	0	11510	942	33	3	4097	3	PARP4	13	25064843	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		25064843	90105035	77	610											
FNDC3A	22862	hgsc.bcm.edu	37	chr13	49719949	49719949	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggacagtagtacttacCtggtcaccaccttccagcct	10	9	8	14	0	1	0	1	0	0	0	2	1	2	1	5	2	3	3	5	2	4	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001079673	exon8	c.C855A	p.T285T	ACTTACCTGGTCA	.	93	3	91	0	.	.	A	49719949	C	A	49719949	2	1	5	1	0	0	0	0	0	0	0	1	6002	668	24	3		3	FNDC3A	13	49719949	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	24655106	49719949	65449929	78	611											
SUGT1	10910	hgsc.bcm.edu	37	chr13	53250435	53250435	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaaggagatgtgcctaCgccaaaacaattcgtagcag	13	6	13	9	2	0	1	0	0	0	1	1	2	0	1	2	3	4	3	2	3	6	3	rs371011852		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001130912	exon12	c.C794T	p.T265M	TGCCTACGCCAAA	.	48	4	43	0	.	.	T	53250435	C	T	53250435	3	4	5	1	0	0	0	0	1	0	0	0	15425	536	19	1	840	1	SUGT1	13	53250435	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	3530486	53250435	61919443	79	612											
OTUD7A	161725	hgsc.bcm.edu	37	chr15	31794022	31794022	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	caagggcaggtagatccctcCgaatgggatgggtgcgaacg	10	6	16	9	3	0	1	0	0	0	1	2	4	2	2	2	4	2	2	2	4	4	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	OTUD7A,NS,malignant_melanoma,0,1	OTUD7A	NM_130901	exon8	c.G1021A	p.G341R	TCCCTCCGAATGG	.	34	2	41	0	.	0	T	31794022	C	T	31794022	3	4	5	1	0	0	0	0	1	0	0	0	11365	661	23	1	1775	1	OTUD7A	15	31794022	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09		31794022	70737370	80	613											
EXD1	161829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41483652	41483652	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acacccacctgaattagtttTtgtctcttttctagaaagga	11	15	6	9	0	2	2	0	1	2	1	3	3	2	3	2	1	0	1	2	1	4	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_152596	exon8	c.A678G	p.Q226Q	TAGTTTTTGTCTC	.	318	72	289	0	.	.	C	41483652	T	C	41483652	2	2	5	1	0	0	0	0	0	0	0	1	5324	1838	64	4		4	EXD1	15	41483652	Silent	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	9689630	41483652	61047740	81	614											
MGA	23269	hgsc.bcm.edu	37	chr15	41961679	41961679	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggcatatcatcttgcactCtatgcatcgttacctgccga	9	12	8	12	2	3	0	1	0	2	0	4	1	3	0	2	1	4	4	2	1	3	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	MGA,NS,carcinoma,0,2	MGA	NM_001080541	exon2	c.C587A	p.S196Y	TGCACTCTATGCA	.	19	2	20	0	.	0	A	41961679	C	A	41961679	3	1	5	1	0	0	0	0	1	0	0	0	9590	913	32	3	589	3	MGA	15	41961679	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	478027	41961679	60569713	82	615											
UBE2Q2	92912	bcgsc.ca	37	chr15	76183298	76183298	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcaatagaatcggtcatcatGcaaataaatgccaccttagt	15	11	6	9	1	3	1	3	0	0	1	4	1	3	1	2	1	2	1	2	1	7	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	UBE2Q2	NM_173469	exon11	c.G972A	p.M324I	CATCATGCAAATA	.	52	4	66	0	.	26	A	76183298	A	A	76183298	3	1	5	1	0	0	0	0	1	0	0	0	16931	1319	46	3	1150	3	UBE2Q2	15	76183298	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	34221619	76183298	26348094	83	616											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85400849	85400849	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cctggcctcatagattccctGaagaactacctgcttctgct	8	12	7	14	0	2	3	1	1	1	2	3	3	3	3	4	1	4	2	4	1	4	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_020778	exon6	c.G3486A	p.L1162L	TTCCCTGAAGAAC	.	30	4	35	0	.	.	A	85400849	G	A	85400849	2	1	5	1	0	0	0	0	0	0	0	1	542	1277	45	3		3	ALPK3	15	85400849	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	9217551	85400849	17130543	84	617											
ASB7	140460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101170164	101170164	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agacacgaacacacggaactAtgaaggacagaccccattgg	16	4	10	11	2	0	3	0	1	0	2	0	6	0	5	2	3	2	0	2	3	4	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_024708	exon5	c.A734G	p.Y245C	GGAACTATGAAGG	.	73	21	77	0	.	.	G	101170164	A	G	101170164	3	3	5	1	0	0	0	0	1	0	0	0	1027	449	16	4	740	4	ASB7	15	101170164	Missense_Mutation	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	15769315	101170164	1361228	85	618											
SNX29	92017	hgsc.bcm.edu	37	chr16	12136879	12136879	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcgctgtgccctcaacGaacactccctggagcgctac	7	7	11	16	3	1	0	1	0	0	0	2	2	2	1	2	2	6	3	2	2	3	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	RUNDC2A,NS,carcinoma,0,2	RUNDC2A	NM_032167	exon5	c.G373T	p.E125X	CTCAACGAACACT	.	42	2	50	0	.	0	T	12136879	G	T	12136879	4	4	5	1	0	0	0	0	0	1	0	0	14952	1059	37	2		2	SNX29	16	12136879	Nonsense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		12136879	78217874	86	619											
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67702138	67702138	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcggccgctgtaccagtacGtcaactattgcaaccctgag	9	9	10	13	3	1	1	1	1	0	0	1	1	1	1	3	1	6	4	3	1	5	4	rs369814761		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001012984	exon4	c.G589A	p.V197I	CAGTACGTCAACT	.	33	8	38	0	.	.	A	67702138	G	A	67702138	3	1	5	1	0	0	0	0	1	0	0	0	1846	1145	40	1	603	1	C16orf86	16	67702138	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	55565259	67702138	22652615	87	620											
CHMP1A	5119	hgsc.bcm.edu	37	chr16	89712424	89712425	+	Frame_Shift_Ins	INS	-	-	CCTT																															cggtggggagaggacaggagINSccttccagcacatcacgggg																								novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001083314	exon6	c.621_622insAAGG	p.G207fs	ACAGGAGCCTTCC	.	89	12	99	0	.	.	CCTT	89712425	-	CCTT	89712424	7	5	5	1	0	1	1	0	0	0	0	0	3374	958	34	0	105	0	CHMP1A	16	89712424	Frame_Shift_Ins	INS	-	TCGA-3X-AAVE-01A-11D-A417-09	22010286	89712424	642329	88	621											
EPN2	22905	ucsc.edu;bcgsc.ca	37	chr17	19186722	19186722	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acgtgtggcccagcagtgccGggagaacatcttcgccatcc	8	7	12	14	3	1	1	0	0	1	1	3	2	2	1	4	2	3	1	4	2	1	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	EPN2	NM_148921	exon3	c.G290T	p.R97L	AGTGCCGGGAGAA	.	32	4	39	0	.	52	T	19186722	G	T	19186722	3	4	5	1	0	0	0	0	1	0	0	0	5214	1116	39	2	292	2	EPN2	17	19186722	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		19186722	62008488	89	622											
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	32955682	32955682	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggggcaaagcactcaacaGccaccgtggatgtggcctgg	9	6	14	12	1	1	0	1	0	0	0	1	1	1	1	3	5	3	2	3	5	2	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_207313	exon4	c.G829A	p.A277T	TCAACAGCCACCG	.	47	8	46	0	.	.	A	32955682	G	A	32955682	3	1	5	1	0	0	0	0	1	0	0	0	16108	971	34	3	843	3	TMEM132E	17	32955682	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	13768960	32955682	48239528	90	623											
MED16	10025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	875282	875282	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatctcggtcagccggTcgccggggctcttgtcaggc	4	9	15	13	4	4	1	2	0	2	1	6	1	4	1	2	5	2	2	2	5	0	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_005481	exon10	c.A1733G	p.D578G	AGCCGGTCGCCGG	.	89	28	105	0	.	.	C	875282	T	C	875282	3	2	5	1	0	0	0	0	1	0	0	0	9484	1667	58	4	928	4	MED16	19	875282	Missense_Mutation	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09		875282	58253701	91	624											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8150345	8150345	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcagcggggcccccagcccCggccacccccacagcagcac	7	0	11	23	3	0	0	0	0	0	0	0	0	0	0	7	3	4	3	7	3	0	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_032447	exon55	c.G6989A	p.R2330Q	CAGCCCCGGCCAC	.	34	9	32	0	.	.	T	8150345	C	T	8150345	3	4	5	1	0	0	0	0	1	0	0	0	5737	652	23	1	1476	1	FBN3	19	8150345	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	7275063	8150345	50978638	92	625											
ZNF136	7695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12297963	12297963	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accttataaatgtaaggtatGtgggaaaccctttcattctc	12	14	7	8	0	2	0	1	0	1	0	3	1	2	1	2	2	1	2	2	2	6	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_003437	exon4	c.G770A	p.C257Y	AGGTATGTGGGAA	.	68	8	60	0	.	.	A	12297963	G	A	12297963	3	1	5	1	0	0	0	0	1	0	0	0	17784	1377	48	3	784	3	ZNF136	19	12297963	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	4147618	12297963	46831020	93	626											
RTBDN	83546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12939521	12939521	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtgcctggcgtacccccaaTagccgcaggcggaagcgact	8	6	13	14	4	0	0	0	0	0	0	0	2	0	1	4	3	4	2	4	3	4	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001270440	exon5	c.A411G	p.L137L	CCCCAATAGCCGC	.	23	7	36	0	.	.	C	12939521	T	C	12939521	2	2	5	1	0	0	0	0	0	0	0	1	13769	1393	49	4		4	RTBDN	19	12939521	Silent	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	641558	12939521	46189462	94	627											
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15758064	15758064	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgccaccgtcggatgctgaCgcctgccttccatttcaaca	7	9	8	17	4	1	1	1	1	0	0	3	2	2	2	6	1	3	1	6	1	1	2	rs200536182	bycluster	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	CYP4F3,NS,malignant_melanoma,0,1	CYP4F3	NM_001199209	exon5	c.C455T	p.T152M	TGCTGACGCCTGC	.	57	9	85	0	.	0	T	15758064	C	T	15758064	3	4	5	1	0	0	0	0	1	0	0	0	4213	536	19	1	469	1	CYP4F3	19	15758064	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	2818543	15758064	43370919	95	628											
OR10H1	26539	broad.mit.edu	37	chr19	15918259	15918259	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caccaagcccacgcctttggCcaccaccagcacatcgtctc	9	6	6	20	2	1	0	0	0	1	0	3	0	1	0	6	1	2	1	6	1	1	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	OR10H1	NM_013940	exon1	c.G589A	p.A197T	CTTTGGCCACCAC	.	71	3	80	0	.	59	T	15918259	C	T	15918259	3	4	5	1	0	0	0	0	1	0	0	0	10953	739	26	3	371	3	OR10H1	19	15918259	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	160195	15918259	43210724	96	629											
ZNF208	7757	hgsc.bcm.edu	37	chr19	22154452	22154452	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgaattaccttatgtttagtAaggattgagaacgtactaaa	15	14	8	4	1	0	2	0	2	0	1	0	4	0	3	1	1	3	3	1	1	9	8	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	ZNF208_ENST00000428290,right_lower_lobe,carcinoma,0,6	ZNF208_ENST00000428290	NM_007153	exon4	c.T3384C	p.L1128L	TTTAGTAAGGATT	.	45	2	54	1	.	0	G	22154452	A	G	22154452	2	3	5	1	0	0	0	0	0	0	0	1	17824	349	13	4		4	ZNF208	19	22154452	Silent	SNP	A	TCGA-3X-AAVE-01A-11D-A417-09	6236193	22154452	36974531	97	630											
CYP2S1	29785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41709463	41709463	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggttctgcatgaggcgcagcGgctgctggcgctggtgccca	4	8	17	12	3	1	1	0	1	1	0	1	1	1	1	1	5	4	6	1	5	0	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_030622	exon7	c.G1085A	p.R362Q	CGCAGCGGCTGCT	.	71	11	85	0	.	.	A	41709463	G	A	41709463	3	1	5	1	0	0	0	0	1	0	0	0	4197	1116	39	1	1111	1	CYP2S1	19	41709463	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	19555011	41709463	17419520	98	631											
CADM4	199731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44130107	44130107	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacaccagcgtgtctccCtccctcaccacagcttggga	8	8	8	17	1	3	0	2	0	1	0	5	1	4	1	4	1	3	1	4	1	1	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_145296	exon6	c.G711T	p.E237D	GTCTCCCTCCCTC	.	48	11	54	0	.	.	A	44130107	C	A	44130107	3	1	5	1	0	0	0	0	1	0	0	0	2587	680	24	3	471	3	CADM4	19	44130107	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	2420644	44130107	14998876	99	632											
FKRP	79147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	47258782	47258782	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcctcttctatgtctcGtggctgcagcaccagcctag	5	12	10	14	1	3	0	0	0	3	0	5	0	4	0	3	2	3	3	3	2	2	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_024301	exon4	c.G75A	p.S25S	TGTCTCGTGGCTG	.	78	15	110	0	.	.	A	47258782	G	A	47258782	2	1	5	1	0	0	0	0	0	0	0	1	5950	1132	40	1		1	FKRP	19	47258782	Silent	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	3128675	47258782	11870201	100	633											
GRIN2D	2906	ucsc.edu;bcgsc.ca	37	chr19	48925062	48925062	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttccagaggccccaggagcaGtacccgcccctgaagtttgg	8	7	12	14	1	0	2	0	1	0	1	1	3	1	3	6	3	2	3	6	3	2	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	GRIN2D	NM_000836	exon10	c.G2112T	p.Q704H	GGAGCAGTACCCG	.	32	4	36	0	.	76	T	48925062	G	T	48925062	3	4	5	1	0	0	0	0	1	0	0	0	6823	1020	36	3	2146	3	GRIN2D	19	48925062	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	1666280	48925062	10203921	101	634											
PPP1R15A	23645	hgsc.bcm.edu	37	chr19	49377974	49377974	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agagacagaggaagaggaagCtgctgaggactggggagaag	15	3	19	4	0	0	5	0	1	0	4	0	10	0	8	0	5	2	2	0	5	3	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_014330	exon2	c.C1484T	p.A495V	AGGAAGCTGCTGA	.	64	4	83	0	.	.	T	49377974	C	T	49377974	3	4	5	1	0	0	0	0	1	0	0	0	12412	797	28	3	1486	3	PPP1R15A	19	49377974	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	452912	49377974	9751009	102	635											
ZNF534	147658	bcgsc.ca	37	chr19	52941105	52941105	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agctgtaaggaatatttatgGatgtaagcatgttgagaaat	15	13	11	2	0	0	1	0	1	0	1	0	4	0	3	0	2	2	5	0	2	6	6	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	ZNF534	NM_001143939	exon4	c.G431T	p.G144V	TTTATGGATGTAA	.	47	4	45	0	.	105	T	52941105	T	T	52941105	3	4	5	1	0	0	0	0	1	0	0	0	18030	1174	41	3	445	3	ZNF534	19	52941105	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	3563131	52941105	6187878	103	636											
PEG3	5178	hgsc.bcm.edu	37	chr19	57335782	57335782	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gctcgatgatctcctccttgGtgcgggtctccggctgcaac	4	11	12	14	3	2	1	0	1	2	0	6	2	3	1	3	3	3	3	3	3	1	1	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	ZIM2_ENST00000326441,right_lower_lobe,carcinoma,0,4	ZIM2_ENST00000326441	NM_001146184	exon3	c.C242A	p.T81N	TCCTTGGTGCGGG	.	32	2	27	0	.	0	T	57335782	G	T	57335782	3	4	5	1	0	0	0	0	1	0	0	0	11767	1261	44	3		3	PEG3	19	57335782	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09	4394677	57335782	1793201	104	637											
ZNF418	147686	hgsc.bcm.edu;bcgsc.ca	37	chr19	58437921	58437921	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgatgaaatgactttccaCattctccacattcataaggc	12	13	5	11	0	3	3	1	3	2	0	5	3	4	3	2	1	0	0	2	1	2	4	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_133460	exon4	c.G1628T	p.C543F	TTTCCACATTCTC	.	61	4	50	0	.	.	A	58437921	C	A	58437921	3	1	5	1	0	0	0	0	1	0	0	0	17952	478	17	3	406	3	ZNF418	19	58437921	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	1102139	58437921	691062	105	638											
GZF1	64412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23349409	23349409	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctcatgtaggtgaaagaccTtttatgtgtgaaacatgtgg	11	14	11	5	0	1	3	1	2	1	1	2	3	1	3	1	2	1	1	1	2	4	3	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_022482	exon3	c.T1470C	p.P490P	AAGACCTTTTATG	.	87	36	112	0	.	.	C	23349409	T	C	23349409	2	2	5	1	0	0	0	0	0	0	0	1	6955	1596	56	4		4	GZF1	20	23349409	Silent	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09		23349409	39676111	106	639											
BMP7	655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	55777538	55777538	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggactcaccatccagCgtctccaccgagagctgcag	8	5	12	16	3	2	1	1	0	1	1	4	3	3	2	5	2	3	2	5	2	0	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001719	exon3	c.G753A	p.T251T	ATCCAGCGTCTCC	.	21	4	23	0	.	.	T	55777538	C	T	55777538	2	4	5	1	0	0	0	0	0	0	0	1	1464	755	27	1		1	BMP7	20	55777538	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	32428129	55777538	7247982	107	640											
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61944199	61944199	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gagctgccaggggatgcagtCcagctggcgtgggtggccgc	5	6	19	11	2	0	0	0	0	0	0	1	2	1	1	3	5	4	3	3	5	0	0	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_020882	exon16	c.C1989A	p.V663V	TGCAGTCCAGCTG	.	34	9	32	0	.	.	A	61944199	C	A	61944199	2	1	5	1	0	0	0	0	0	0	0	1	3702	842	30	3		3	COL20A1	20	61944199	Silent	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	6166661	61944199	1081321	108	641											
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30888052	30888052	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gtaccttggtcaggcacttgGggttgccatcggggtcagtc	5	11	15	10	1	2	0	2	0	0	0	4	0	2	0	2	6	2	3	2	6	1	4	rs369641628		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_001161368	exon9	c.C755T	p.P252L	CACTTGGGGTTGC	.	61	17	54	0	.	.	A	30888052	G	A	30888052	3	1	5	1	0	0	0	0	1	0	0	0	14038	1232	43	3	487	3	SEC14L4	22	30888052	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		30888052	20416514	109	642											
DUSP18	150290	hgsc.bcm.edu	37	chr22	31059695	31059695	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagcacagtgcagcaaagtaCggccctgcttcatctccacg	10	7	9	15	2	2	0	1	0	1	0	3	0	2	0	2	1	5	5	2	1	2	2	rs200346696	bycluster	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	DUSP18,caecum,carcinoma,0,1	DUSP18	NM_152511	exon2	c.G296A	p.R99H	AAAGTACGGCCCT	.	34	3	40	0	0.001	0	T	31059695	C	T	31059695	3	4	5	1	0	0	0	0	1	0	0	0	4843	536	19	1	274	1	DUSP18	22	31059695	Missense_Mutation	SNP	C	TCGA-3X-AAVE-01A-11D-A417-09	171643	31059695	20244871	110	643											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42191438	42191438	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgcggtaccggagtagcagTgtcctctctcatgaagaggt	9	10	13	9	2	2	2	1	1	1	1	4	3	3	3	2	3	3	3	2	3	3	2	novel		TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	.	NM_152513	exon29	c.T3558C	p.S1186S	TAGCAGTGTCCTC	.	96	26	102	0	.	.	C	42191438	T	C	42191438	2	2	5	1	0	0	0	0	0	0	0	1	9515	1693	59	4		4	MEI1	22	42191438	Silent	SNP	T	TCGA-3X-AAVE-01A-11D-A417-09	11131743	42191438	9113128	111	644											
RBMX	27316	ucsc.edu	37	chrX	135958704	135958704	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	actgcgaactggtcctgaagGtgcagatctcttaggaggag	10	9	14	8	1	1	2	0	1	1	1	3	5	2	4	1	4	3	1	1	4	3	1	rs112089728	bycluster	TCGA-3X-AAVE-01A-11D-A417-09	TCGA-3X-AAVE-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	57584133-036a-4eab-9c63-c0fdd134ae42	36d5f070-dd59-4be0-85b4-ce3e1cb99d06	.	RBMX	NM_002139	exon5	c.C499G	p.P167A	CTGAAGGTGCAGA	.	52	14	34	4	.	149	C	135958704	G	C	135958704	3	2	5	1	0	0	0	0	1	0	0	0	13203	1261	44	5	751	5	RBMX	23	135958704	Missense_Mutation	SNP	G	TCGA-3X-AAVE-01A-11D-A417-09		135958704	19311856	112	645											
ATAD3B	83858	hgsc.bcm.edu	37	chr1	1431002	1431002	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gggcgcggggtcgagcacccCctatccggagtccaaggcga	7	4	16	14	5	0	0	0	0	0	0	3	3	2	1	4	5	1	1	4	5	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ATAD3B,NS,carcinoma,0,1	ATAD3B	NM_031921	exon16	c.C1752A	p.P584P	GCACCCCCTATCC	.	47	2	71	0	.	0	A	1431002	C	A	1431002	2	1	6	1	0	0	0	0	0	0	0	1	1073	610	22	3		3	ATAD3B	1	1431002	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		1431002	247819619	1	646											
KIAA1751	85452	hgsc.bcm.edu	37	chr1	1887065	1887065	+	Missense_Mutation	SNP	C	C	A																															cccctgggcccctcagccccCtggaatgctgccctgaggcc																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KIAA1751,colon,carcinoma,0,1	KIAA1751	NM_001080484	exon18	c.G2241T	p.Q747H	AGCCCCCTGGAAT	.	41	2	47	0	.	0	A	1887065	C	A	1887065	3	1	6	1	0	0	0	0	1	0	0	0	8298	680	24	3	51	3	KIAA1751	1	1887065	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	456063	1887065	247363556	2	647	2	2									
KIAA1751	339457	ucsc.edu;bcgsc.ca	37	chr1	1887067	1887067	+	Missense_Mutation	SNP	G	G	T																															cctgggcccctcagccccctGgaatgctgccctgaggccct																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KIAA1751,colon,carcinoma,+2,1	KIAA1751	NM_001080484	exon18	c.C2239A	p.Q747K	CCCCCTGGAATGC	.	42	4	50	0	.	92	T	1887067	G	T	1887067	3	4	6	1	0	0	0	0	1	0	0	0	8298	1357	47	3	53	3	KIAA1751	1	1887067	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2	1887067	247363554	3	648	2	2									
SPEN	23013	broad.mit.edu	37	chr1	16261510	16261510	+	Frame_Shift_Del	DEL	G	G	-																															gtgtccacgcctgtcacccaGggaggcacagtgaaggttct																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SPEN	NM_015001	exon11	c.8775delG	p.Q2925fs	CACCCAGGGAGGC	.	6	2	6	0	.	374	-	16261510	G	-	16261510	7	5	6	1	0	1	0	1	0	0	0	0	15094	991	35	0	8817	0	SPEN	1	16261510	Frame_Shift_Del	DEL	G	TCGA-4G-AAZO-01A-12D-A417-09	14374443	16261510	232989111	4	649											
AKR7A2	8574	hgsc.bcm.edu	37	chr1	19632584	19632584	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgctggcgccatatgcGgcctgcagggccttctccac	4	7	15	15	3	1	0	0	0	1	0	2	0	1	0	4	5	2	2	4	5	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	AKR7A2,colon,carcinoma,0,2	AKR7A2	NM_003689	exon6	c.C846A	p.A282A	ATATGCGGCCTGC	.	25	2	24	0	.	0	T	19632584	G	T	19632584	2	4	6	1	0	0	0	0	0	0	0	1	472	1103	39	2		2	AKR7A2	1	19632584	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3371074	19632584	229618037	5	650											
ARID1A	8289	hgsc.bcm.edu	37	chr1	27107135	27107136	+	Frame_Shift_Ins	INS	-	-	A																															aaggtggacgagaaccactcINSagagtttactctgtacgaat																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,2	.	NM_006015	exon20	c.6746_6747insA	p.S2249fs	ACCACTCAGAGTT	.	15	10	16	0	.	842	A	27107136	-	A	27107135	7	5	6	1	0	1	1	0	0	0	0	0	910	838	29	0	6824	0	ARID1A	1	27107135	Frame_Shift_Ins	INS	-	TCGA-4G-AAZO-01A-12D-A417-09	7474551	27107135	222143486	6	651											
PUM1	9698	hgsc.bcm.edu;bcgsc.ca	37	chr1	31467928	31467928	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctttgacgtctgcatcaatcCcattctgcactggtaaacca	10	12	6	13	1	3	1	1	1	2	0	4	1	4	1	2	1	3	3	2	1	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014676	exon6	c.G860T	p.G287V	TCAATCCCATTCT	.	56	4	95	0	.	.	A	31467928	C	A	31467928	3	1	6	1	0	0	0	0	1	0	0	0	12877	623	22	3	2774	3	PUM1	1	31467928	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4360793	31467928	217782693	7	652											
SCP2	6342	hgsc.bcm.edu;bcgsc.ca	37	chr1	53453786	53453786	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtggtggactgatttcaaaGggacacccactaggcgctac	11	8	12	10	1	1	1	1	1	0	0	1	3	1	3	1	4	1	1	1	4	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002979	exon11	c.G1059T	p.K353N	TTCAAAGGGACAC	.	67	4	90	0	.	.	T	53453786	G	T	53453786	3	4	6	1	0	0	0	0	1	0	0	0	13988	991	35	3	1101	3	SCP2	1	53453786	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	21985858	53453786	195796835	8	653											
LRP8	7804	hgsc.bcm.edu;bcgsc.ca	37	chr1	53716447	53716447	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgttttcctgtagactGggttgtcaaaattcatgctt	7	18	9	7	0	2	1	2	0	0	1	3	1	3	1	1	1	1	5	1	1	3	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004631	exon17	c.C2591A	p.P864Q	TAGACTGGGTTGT	.	35	4	37	0	.	.	T	53716447	G	T	53716447	3	4	6	1	0	0	0	0	1	0	0	0	9008	1348	47	3	312	3	LRP8	1	53716447	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	262661	53716447	195534174	9	654											
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	53730058	53730058	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tttcgggtcactggccttgtCcatgtaggcgcttaagagaa	8	12	12	9	2	1	1	1	0	0	1	3	2	2	1	2	3	0	2	2	3	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004631	exon10	c.G1438A	p.D480N	CCTTGTCCATGTA	.	15	5	14	0	.	.	T	53730058	C	T	53730058	3	4	6	1	0	0	0	0	1	0	0	0	9008	855	30	3	1493	3	LRP8	1	53730058	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	13611	53730058	195520563	10	655											
COL11A1	1301	hgsc.bcm.edu	37	chr1	103540202	103540202	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcatccaaaatccttGttccaaaaaccgtgattcca	12	13	3	13	1	2	1	1	1	1	0	6	1	6	1	5	0	1	1	5	0	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	COL11A1_ENST00000370096,NS,carcinoma,0,2	COL11A1_ENST00000370096	NM_001854	exon4	c.C623A	p.T208K	ATCCTTGTTCCAA	.	37	2	35	0	.	0	T	103540202	G	T	103540202	3	4	6	1	0	0	0	0	1	0	0	0	3690	1377	48	3	5210	3	COL11A1	1	103540202	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	49810144	103540202	145710419	11	656											
CELSR2	1952	hgsc.bcm.edu	37	chr1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccaacgccgccgccgccgcTgctgctgctgttgctgctgc	2	8	12	19	5	0	0	0	0	0	0	0	0	0	0	5	0	7	7	5	0	1	1	rs200277265		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT	.	7	4	6	1	.	0	C	109792751	T	C	109792751	3	2	6	1	0	0	0	0	1	0	0	0	3244	1580	55	4	52	4	CELSR2	1	109792751	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	6252549	109792751	139457870	12	657											
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110458281	110458281	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtcagatggagacctcgtGccaaattacatttgagtttg	11	12	10	8	1	1	3	1	1	0	2	2	4	1	3	2	1	2	1	2	1	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172210	exon3	c.G188A	p.C63Y	CCTCGTGCCAAAT	.	72	13	56	0	.	.	A	110458281	G	A	110458281	3	1	6	1	0	0	0	0	1	0	0	0	3956	1319	46	3	198	3	CSF1	1	110458281	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	665530	110458281	138792340	13	658											
VPS45	11311	hgsc.bcm.edu	37	chr1	150054917	150054917	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaatctgctggaggtttcaGaggttgagcaagaactggcc	10	9	15	7	0	2	3	1	1	1	2	2	5	2	5	1	5	3	4	1	5	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007259	exon10	c.G1054T	p.E352X	GTTTCAGAGGTTG	.	87	4	44	0	.	.	T	150054917	G	T	150054917	4	4	6	1	0	0	0	0	0	1	0	0	17271	943	33	3	1092	3	VPS45	1	150054917	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	39596636	150054917	99195704	14	659											
GON4L	54856	hgsc.bcm.edu;bcgsc.ca	37	chr1	155732107	155732107	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctggcccgagcccgacttccCcgcttgttgcgagctcgatg	4	9	12	16	5	0	0	0	0	0	0	2	4	1	0	4	1	3	3	4	1	0	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037533	exon23	c.G4785T	p.R1595R	ACTTCCCCGCTTG	.	95	5	35	0	.	.	A	155732107	C	A	155732107	2	1	6	1	0	0	0	0	0	0	0	1	6611	610	22	3		3	GON4L	1	155732107	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5677190	155732107	93518514	15	660											
CASQ1	844	hgsc.bcm.edu;bcgsc.ca	37	chr1	160169648	160169648	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gatctctctacagctggtccCatactgggagaagacgtttg	9	11	11	10	1	2	2	0	0	2	2	4	4	3	2	1	2	3	2	1	2	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001231	exon10	c.C992T	p.P331L	TGGTCCCATACTG	.	62	4	37	0	.	.	T	160169648	C	T	160169648	3	4	6	1	0	0	0	0	1	0	0	0	2698	594	21	3	1030	3	CASQ1	1	160169648	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4437541	160169648	89080973	16	661											
DNM3	26052	hgsc.bcm.edu	37	chr1	172061989	172061989	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agcagaggagcagtcaggttCacaagaaaaccacagttgga	16	5	12	8	0	2	2	2	0	0	2	2	4	2	4	1	3	3	4	1	3	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001136127	exon13	c.C1519T	p.H507Y	CAGGTTCACAAGA	.	82	3	48	0	.	.	T	172061989	C	T	172061989	3	4	6	1	0	0	0	0	1	0	0	0	4700	826	29	3	1569	3	DNM3	1	172061989	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11892341	172061989	77188632	17	662											
CDC73	79577	hgsc.bcm.edu	37	chr1	193094241	193094241	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atcttgccttaattatttcaGgactggaaaggaaggccaac	13	11	9	8	0	2	0	1	0	1	0	2	3	2	3	2	4	2	0	2	4	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CDC73,NS,carcinoma,0,1	CDC73	NM_024529	exon2	c.132-1G>T	.	ATTTCAGGACTGG	.	71	3	71	0	.	0	T	193094241	G	T	193094241	5	4	6	1	0	0	0	0	0	0	1	0	3107	1014	35	3	137	3	CDC73	1	193094241	Splice_Site	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	21032252	193094241	56156380	18	663											
GOLT1A	127845	hgsc.bcm.edu	37	chr1	204170901	204170901	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaaccaaaaggtcttcctCaggccaatgatgagggacag	15	6	11	9	0	2	3	1	2	1	1	3	4	3	4	3	3	1	0	3	3	5	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GOLT1A,bladder,carcinoma,0,1	GOLT1A	NM_198447	exon3	c.G156T	p.L52L	CTTCCTCAGGCCA	.	38	2	39	0	.	0	A	204170901	C	A	204170901	2	1	6	1	0	0	0	0	0	0	0	1	6609	813	29	3		3	GOLT1A	1	204170901	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11076660	204170901	45079720	19	664											
CR2	1380	ucsc.edu;bcgsc.ca	37	chr1	207649657	207649657	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	catagctcgattttctcctgGaatgtcaatcctgtacagct	9	14	7	11	1	2	0	1	0	1	0	5	2	3	1	2	1	3	3	2	1	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CR2	NM_001006658	exon15	c.G2795T	p.G932V	CTCCTGGAATGTC	.	28	4	34	0	.	164	T	207649657	G	T	207649657	3	4	6	1	0	0	0	0	1	0	0	0	3865	1174	41	3	2853	3	CR2	1	207649657	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3478756	207649657	41600964	20	665											
C1orf74	148304	bcgsc.ca	37	chr1	209956321	209956321	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aactctctgggacactaaaaGaatagagcaggattgggggt	14	8	13	6	0	1	2	0	0	1	2	2	4	1	4	0	4	2	1	0	4	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C1orf74,rectum,carcinoma,0,1	C1orf74	NM_152485	exon2	c.C659A	p.S220Y	CTAAAAGAATAGA	.	42	4	48	0	.	30	T	209956321	T	T	209956321	3	4	6	1	0	0	0	0	1	0	0	0	2072	942	33	3	154	3	C1orf74	1	209956321	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2306664	209956321	39294300	21	666											
CENPF	1063	bcgsc.ca	37	chr1	214820276	214820276	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aagagctcaatgagagagtgGcagccctgcataatgaccaa	15	6	11	9	0	1	4	1	2	0	2	1	5	1	4	2	1	3	3	2	1	4	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CENPF	NM_016343	exon13	c.G7363A	p.A2455T	AGAGTGGCAGCCC	.	53	4	99	0	.	321	A	214820276	A	A	214820276	3	1	6	1	0	0	0	0	1	0	0	0	3253	1203	42	3	7409	3	CENPF	1	214820276	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4863955	214820276	34430345	22	667											
WDR26	80232	hgsc.bcm.edu;bcgsc.ca	37	chr1	224605987	224605987	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaacatggtctataagcaGagacacagaatctagattat	18	9	7	7	0	2	3	0	0	2	3	2	4	2	3	0	1	2	1	0	1	6	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_025160	exon6	c.C994A	p.L332M	TAAGCAGAGACAC	.	65	4	78	0	.	.	T	224605987	G	T	224605987	3	4	6	1	0	0	0	0	1	0	0	0	17343	933	33	3	1027	3	WDR26	1	224605987	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	9785711	224605987	24644634	23	668											
CAPN9	10753	broad.mit.edu	37	chr1	230928600	230928600	+	Frame_Shift_Del	DEL	T	T	-																															gctctccaccctttagaaccTtttccttcggtttgatgctg																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CAPN9	NM_006615	exon17	c.1796delT	p.L599fs	AGAACCTTTTCCT	.	6	2	19	0	.	116	-	230928600	T	-	230928600	7	5	6	1	0	1	0	1	0	0	0	0	2650	1609	56	0	1862	0	CAPN9	1	230928600	Frame_Shift_Del	DEL	T	TCGA-4G-AAZO-01A-12D-A417-09	6322613	230928600	18322021	24	669											
LYST	1130	hgsc.bcm.edu	37	chr1	235827341	235827341	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctcacaggctttaagtccCatgtgctccataacctagag	10	11	7	13	0	1	1	1	0	1	1	4	1	3	1	3	1	2	2	3	1	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000081	exon52	c.G11210T	p.W3737L	AAGTCCCATGTGC	.	77	4	79	0	.	.	A	235827341	C	A	235827341	3	1	6	1	0	0	0	0	1	0	0	0	9174	595	21	3	203	3	LYST	1	235827341	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4898741	235827341	13423280	25	670											
LYST	1130	hgsc.bcm.edu	37	chr1	235878584	235878584	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cgctattggaatagtgggagCcatagtgatagggctgcacg	10	9	15	7	2	0	1	0	1	0	0	0	3	0	3	1	3	2	3	1	3	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	LYST,NS,carcinoma,0,1	LYST	NM_000081	exon42	c.G9701A	p.G3234D	TGGGAGCCATAGT	.	30	2	59	0	.	0	T	235878584	C	T	235878584	3	4	6	1	0	0	0	0	1	0	0	0	9174	739	26	3	1752	3	LYST	1	235878584	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	51243	235878584	13372037	26	671											
ADAM17	6868	hgsc.bcm.edu;bcgsc.ca	37	chr2	9661362	9661362	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atcttcacatcccaagcatcCttttcttcatttgggtaact	9	16	4	12	0	4	0	2	0	2	0	6	0	6	0	2	1	2	2	2	1	2	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003183	exon8	c.G927T	p.K309N	AGCATCCTTTTCT	.	74	4	59	0	.	.	A	9661362	C	A	9661362	3	1	6	1	0	0	0	0	1	0	0	0	237	680	24	3	1595	3	ADAM17	2	9661362	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		9661362	233538011	27	672											
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	18766068	18766068	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttgcattttggtgctGcgccgggagccaggatcggg	4	12	15	10	3	1	0	0	0	1	0	3	2	1	2	2	4	4	2	2	4	0	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001199087	exon5	c.C666T	p.R222R	GGTGCTGCGCCGG	.	67	23	93	0	.	.	A	18766068	G	A	18766068	2	1	6	1	0	0	0	0	0	0	0	1	10734	1306	46	3		3	NT5C1B	2	18766068	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	9104706	18766068	224433305	28	673											
GPR113	165082	broad.mit.edu;bcgsc.ca	37	chr2	26536340	26536340	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccacagagcctcctcactaTgcccctcttgctctcaggac	7	9	6	19	0	3	1	2	0	2	1	5	2	4	2	5	1	3	1	5	1	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GPR113	NM_001145168	exon9	c.A1378G	p.I460V	TCACTATGCCCCT	.	18	5	33	0	.	134	C	26536340	T	C	26536340	3	2	6	1	0	0	0	0	1	0	0	0	6670	1464	51	4	1970	4	GPR113	2	26536340	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	7770272	26536340	216663033	29	674											
GALNT14	79623	bcgsc.ca	37	chr2	31168651	31168651	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggtgttagcccaactcacccCctctgagctccgaggcagac	8	7	10	16	1	2	2	1	1	1	1	3	3	3	2	4	2	3	3	4	2	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GALNT14	NM_001253826	exon8	c.G755T	p.G252V	TCACCCCCTCTGA	.	56	4	68	0	.	103	A	31168651	A	A	31168651	3	1	6	1	0	0	0	0	1	0	0	0	6252	623	22	3	954	3	GALNT14	2	31168651	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4632311	31168651	212030722	30	675											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32724972	32724972	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcaatagggaatacagtgcaAgagtgtctgtgaccacaaat	15	8	11	7	0	1	2	0	1	1	1	1	3	1	3	1	1	2	2	1	1	6	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016252	exon46	c.A8827G	p.R2943G	AGTGCAAGAGTGT	.	28	9	27	0	.	.	G	32724972	A	G	32724972	3	3	6	1	0	0	0	0	1	0	0	0	1437	64	3	4	9009	4	BIRC6	2	32724972	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	1556321	32724972	210474401	31	676											
AHSA2	130872	hgsc.bcm.edu;bcgsc.ca	37	chr2	61413903	61413903	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaggttcactgcagctGacccccctaaatggttgaat	13	10	8	10	0	1	2	1	2	0	0	1	2	1	2	3	2	2	4	3	2	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_152392	exon6	c.G396T	p.L132L	GCAGCTGACCCCC	.	56	4	95	0	.	.	T	61413903	G	T	61413903	2	4	6	1	0	0	0	0	0	0	0	1	416	1277	45	3		3	AHSA2	2	61413903	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	28688931	61413903	181785470	32	677											
APLF	200558	hgsc.bcm.edu	37	chr2	68765137	68765137	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	acataaaattgccactaaaaGaacaccacataaagaagatg	22	6	5	8	0	0	3	0	0	0	3	0	3	0	3	2	0	2	0	2	0	8	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,7	.	NM_173545	exon7	c.G938A	p.R313K	CTAAAAGAACACC	.	42	4	43	1	.	69	A	68765137	G	A	68765137	3	1	6	1	0	0	0	0	1	0	0	0	772	942	33	3	964	3	APLF	2	68765137	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	7351234	68765137	174434236	33	678											
ZAP70	7535	hgsc.bcm.edu	37	chr2	98341665	98341665	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacagcagcctgacgcgtgaGgaggccgagcgcaaacttta	11	5	13	12	4	0	2	0	2	0	0	0	4	0	3	2	2	4	2	2	2	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001079	exon4	c.G513T	p.E171D	GCGTGAGGAGGCC	.	45	3	44	0	.	.	T	98341665	G	T	98341665	3	4	6	1	0	0	0	0	1	0	0	0	17574	991	35	3	519	3	ZAP70	2	98341665	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	29576528	98341665	144857708	34	679											
UXS1	80146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	106761718	106761718	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtccgatccagtgctccaCgtttctcttcctgcccgtga	5	13	8	15	3	1	1	0	1	1	0	6	2	5	1	5	0	2	2	5	0	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	UXS1_ENST00000409501,NS,carcinoma,0,2	UXS1_ENST00000409501	NM_001253875	exon6	c.G400A	p.V134M	GCTCCACGTTTCT	.	35	7	50	0	.	0	T	106761718	C	T	106761718	3	4	6	1	0	0	0	0	1	0	0	0	17169	536	19	1	917	1	UXS1	2	106761718	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8420053	106761718	136437655	35	680											
CKAP2L	150468	bcgsc.ca	37	chr2	113513554	113513554	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttagaattaaagcaaagtacCttcgatcctctgctgttgcc	11	13	7	10	1	1	1	0	0	1	1	3	2	2	1	3	0	4	4	3	0	6	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CKAP2L	NM_152515	exon4	c.G1394A	p.R465K	AAGTACCTTCGAT	.	52	4	56	0	.	54	T	113513554	T	T	113513554	3	4	6	1	0	0	0	0	1	0	0	0	3466	695	24	3	867	3	CKAP2L	2	113513554	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	6751836	113513554	129685819	36	681											
PTPN4	5775	hgsc.bcm.edu	37	chr2	120684190	120684190	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgggagaactgaagtcCaatcagttcagtatggcaaa	14	9	11	7	0	3	2	3	1	0	1	4	3	4	2	1	2	1	3	1	2	5	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PTPN4,NS,carcinoma,0,1	PTPN4	NM_002830	exon13	c.C1018A	p.Q340K	GAAGTCCAATCAG	.	58	3	58	0	.	0	A	120684190	C	A	120684190	3	1	6	1	0	0	0	0	1	0	0	0	12842	595	21	3	1064	3	PTPN4	2	120684190	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	7170636	120684190	122515183	37	682											
EPB41L5	57669	hgsc.bcm.edu;bcgsc.ca	37	chr2	120925069	120925069	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacatccatgatcacacccCggtggattgttccggtaagt	9	10	9	13	2	1	1	1	1	0	0	3	2	3	2	5	3	0	2	5	3	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	EPB41L5,caecum,carcinoma,0,1	EPB41L5	NM_020909	exon23	c.C1990A	p.R664R	ACACCCCGGTGGA	.	62	4	42	0	.	0	A	120925069	C	A	120925069	2	1	6	1	0	0	0	0	0	0	0	1	5185	643	23	2		2	EPB41L5	2	120925069	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	240879	120925069	122274304	38	683											
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	125320826	125320826	+	Frame_Shift_Del	DEL	G	G	-																															ctactgtgaacatggaggaaGctgctcccagtcctggacta																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_130773	exon11	c.1678delA	p.S560fs	GAGGAAGCTGCTC	.	42	16	50	0	.	.	-	125320826	G	-	125320826	7	5	6	1	0	1	0	1	0	0	0	0	3673	971	34	0	1721	0	CNTNAP5	2	125320826	Frame_Shift_Del	DEL	G	TCGA-4G-AAZO-01A-12D-A417-09	4395757	125320826	117878547	39	684											
NEB	4703	bcgsc.ca	37	chr2	152354773	152354773	+	Splice_Site	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcccctttctttccaaaataCcgagctaaggttttcttgat	9	16	5	11	1	2	1	0	1	2	0	4	2	4	1	4	1	2	2	4	1	4	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	NEB	NM_001164507	exon171	c.24207+1G>A	.	AAAATACCGAGCT	.	66	4	83	0	.	1697	T	152354773	T	T	152354773	5	4	6	1	0	0	0	0	0	0	1	0	10349	521	18	3	1421	3	NEB	2	152354773	Splice_Site	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	27033947	152354773	90844600	40	685											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152547337	152547337	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tctggatgaactttgtaggtAtgctagaaaagaagatgttc	13	13	11	4	0	1	4	0	1	1	3	2	5	1	5	0	2	2	4	0	2	7	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004543	exon24	c.T2214A	p.H738Q	GTAGGTATGCTAG	.	44	11	63	0	.	.	T	152547337	A	T	152547337	3	4	6	1	0	0	0	0	1	0	0	0	10349	446	16	5	24108	5	NEB	2	152547337	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	192564	152547337	90652036	41	686											
PRPF40A	55660	bcgsc.ca	37	chr2	153573781	153573781	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaagccgtcagcagagaccCaagagccggagcagaggctt	12	3	15	11	2	1	3	1	0	0	3	1	6	1	5	3	3	4	3	3	3	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PRPF40A	.	.	.	.	GAGACCCAAGAGC	.	49	4	61	0	.	149	A	153573781	A	A	153573781	3	1	6	1	0	0	0	0	1	0	0	0	12623	609	21	3		3	PRPF40A	2	153573781	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1026444	153573781	89625592	42	687											
SCN2A	6326	hgsc.bcm.edu	37	chr2	166170618	166170618	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagcaacaagaagaagctcaGgtatagtgaacaagcatacg	19	5	10	7	1	1	3	1	1	0	2	1	3	1	3	0	1	6	4	0	1	10	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SCN2A_ENST00000375437,colon,carcinoma,0,5	SCN2A_ENST00000375437	NM_001040143	exon9	c.G1383T	p.Q461H	AGCTCAGGTATAG	.	23	2	31	0	.	0	T	166170618	G	T	166170618	3	4	6	1	0	0	0	0	1	0	0	0	13970	1014	35	3	1513	3	SCN2A	2	166170618	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	12596837	166170618	77028755	43	688											
DFNB59	494513	hgsc.bcm.edu	37	chr2	179325879	179325879	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagggccttgcatactctgtGgaatggggaacttcaaaagg	12	9	13	7	0	2	0	1	0	1	0	2	2	2	2	1	5	3	1	1	5	6	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DFNB59,NS,carcinoma,0,1	DFNB59	NM_001042702	exon7	c.G937T	p.G313X	CTCTGTGGAATGG	.	48	2	60	0	.	0	T	179325879	G	T	179325879	4	4	6	1	0	0	0	0	0	1	0	0	4484	1349	47	3	959	3	DFNB59	2	179325879	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	13155261	179325879	63873494	44	689											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	185802286	185802286	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aatttaacatattctagaacTtactgttgttggaaaaccaa	16	14	5	6	0	1	1	0	0	1	1	1	2	1	2	1	1	4	2	1	1	9	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_194250	exon4	c.T2163A	p.T721T	TAGAACTTACTGT	.	39	9	42	0	.	.	A	185802286	T	A	185802286	2	1	6	1	0	0	0	0	0	0	0	1	18219	1596	56	5		5	ZNF804A	2	185802286	Silent	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	6476407	185802286	57397087	45	690											
DNAH7	56171	hgsc.bcm.edu	37	chr2	196671535	196671535	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tttatcttcccattcttcagGgaaaacctcatggtgtggtt	8	16	8	9	0	4	0	2	0	2	0	5	1	5	1	2	3	1	1	2	3	3	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018897	exon54	c.C10105A	p.P3369T	CTTCAGGGAAAAC	.	72	4	111	0	.	.	T	196671535	G	T	196671535	3	4	6	1	0	0	0	0	1	0	0	0	4633	1232	43	3	2017	3	DNAH7	2	196671535	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	10869249	196671535	46527838	46	691											
SF3B1	23451	hgsc.bcm.edu	37	chr2	198269868	198269868	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatttttctctctttttgctCttctggactaagtgttgatt	5	23	6	7	0	4	1	0	1	4	0	5	2	4	2	0	1	1	2	0	1	2	9	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_012433	exon11	c.G1471T	p.E491X	TTTGCTCTTCTGG	.	63	4	66	0	.	.	A	198269868	C	A	198269868	4	1	6	1	0	0	0	0	0	1	0	0	14203	922	32	3	2503	3	SF3B1	2	198269868	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1598333	198269868	44929505	47	692											
PLEKHM3	389072	hgsc.bcm.edu	37	chr2	208866251	208866251	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gttcagggacttcctggatcCcataaacctctgcctgctgc	7	11	9	14	0	2	0	1	0	1	0	4	2	4	2	4	2	4	2	4	2	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,2	.	NM_001080475	exon2	c.G113T	p.G38V	TGGATCCCATAAA	.	14	2	22	0	.	101	A	208866251	C	A	208866251	3	1	6	1	0	0	0	0	1	0	0	0	12130	623	22	3	2200	3	PLEKHM3	2	208866251	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	10596383	208866251	34333122	48	693											
SPAG16	79582	hgsc.bcm.edu	37	chr2	215275017	215275017	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cttttctggaggctctgacgGcacagttcgaacgtggtctt	6	13	12	10	3	3	1	0	1	3	0	4	3	3	2	0	4	1	3	0	4	1	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SPAG16,colon,carcinoma,0,1	SPAG16	NM_024532	exon16	c.G1874A	p.G625D	CTGACGGCACAGT	.	14	2	17	0	.	0	A	215275017	G	A	215275017	3	1	6	1	0	0	0	0	1	0	0	0	15034	1203	42	3	1952	3	SPAG16	2	215275017	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6408766	215275017	27924356	49	694											
DIS3L2	129563	hgsc.bcm.edu;bcgsc.ca	37	chr2	232894774	232894774	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggtggtcgtgaaactgcttcCcgaggagcattggaaggtga	9	9	16	7	2	0	2	0	2	0	0	2	5	1	4	1	5	3	2	1	5	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001257282	exon5	c.C350A	p.P117H	TGCTTCCCGAGGA	.	69	4	95	0	.	.	A	232894774	C	A	232894774	3	1	6	1	0	0	0	0	1	0	0	0	4565	623	22	3	364	3	DIS3L2	2	232894774	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	17619757	232894774	10304599	50	695											
CHRNG	1146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	233408058	233408058	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcttccttgtggccaaGaaggtgcctgaaacctccca	8	11	8	14	0	1	2	0	1	1	1	4	2	4	2	6	2	2	0	6	2	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005199	exon8	c.G879T	p.K293N	GGCCAAGAAGGTG	.	22	4	24	0	.	.	T	233408058	G	T	233408058	3	4	6	1	0	0	0	0	1	0	0	0	3418	933	33	3	909	3	CHRNG	2	233408058	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	513284	233408058	9791315	51	696											
SUMF1	285362	bcgsc.ca	37	chr3	4452606	4452606	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	caccagtctgaagtccattcCcatgcgttccccactatgtt	8	12	6	15	1	1	1	0	1	1	0	4	1	4	1	5	0	1	2	5	0	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SUMF1	NM_001164675	exon7	c.G897T	p.W299C	CCATTCCCATGCG	.	21	3	66	0	.	23	A	4452606	A	A	4452606	3	1	6	1	0	0	0	0	1	0	0	0	15441	624	22	3	239	3	SUMF1	3	4452606	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		4452606	193569824	52	697											
GLB1	2720	bcgsc.ca	37	chr3	33110405	33110405	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agaaaatattccacatcatgGtcctcagaaaactggtactg	15	10	7	9	0	2	2	2	0	0	2	4	2	4	2	2	2	2	1	2	2	6	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GLB1,NS,carcinoma,-1,1	GLB1	NM_000404	exon3	c.C303A	p.D101E	ATCATGGTCCTCA	.	22	3	38	0	.	51	T	33110405	T	T	33110405	3	4	6	1	0	0	0	0	1	0	0	0	6469	1252	44	3	1786	3	GLB1	3	33110405	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	28657799	33110405	164912025	53	698											
LARS2	23395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45500306	45500306	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgaacatggctgttcAtggcgttctggagcaaaggt	9	11	15	6	1	2	1	1	1	1	0	2	3	2	3	0	5	2	4	0	5	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015340	exon8	c.A678T	p.S226S	CTGTTCATGGCGT	.	25	20	33	0	.	.	T	45500306	A	T	45500306	2	4	6	1	0	0	0	0	0	0	0	1	8674	204	8	5		5	LARS2	3	45500306	Silent	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	12389901	45500306	152522124	54	699											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52437802	52437802	+	Frame_Shift_Del	DEL	T	T	-																															gagaggtccttctgggactcTttgagcttctcagccaagac																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004656	exon13	c.1360delG	p.E454fs	GGACTCTTTGAGC	.	17	11	28	0	.	.	-	52437802	T	-	52437802	7	5	6	1	0	1	0	1	0	0	0	0	1309	1606	56	0	850	0	BAP1	3	52437802	Frame_Shift_Del	DEL	T	TCGA-4G-AAZO-01A-12D-A417-09	6937496	52437802	145584628	55	700	3	2									
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	chr3	52437805	52437805	+	Silent	SNP	G	G	A																															aggtccttctgggactctttGagcttctcagccaagacgtt																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004656	exon13	c.C1356T	p.L452L	CTCTTTGAGCTTC	.	17	12	25	0	.	.	A	52437805	G	A	52437805	2	1	6	1	0	0	0	0	0	0	0	1	1309	1277	45	3		3	BAP1	3	52437805	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3	52437805	145584625	56	701	3	2									
PBRM1	55193	hgsc.bcm.edu	37	chr3	52668817	52668817	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcttctgactctccctCttcatagcgtgcagctggaa	6	14	8	13	1	5	1	1	1	4	0	6	2	5	2	1	1	4	3	1	1	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PBRM1_ENST00000356770,NS,carcinoma,0,5	PBRM1_ENST00000356770	NM_018313	exon12	c.G1102T	p.E368X	CTCCCTCTTCATA	.	11	3	28	0	.	0	A	52668817	C	A	52668817	4	1	6	1	0	0	0	0	0	1	0	0	11538	922	32	3	3878	3	PBRM1	3	52668817	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	231012	52668817	145353613	57	702											
ERC2	26059	hgsc.bcm.edu	37	chr3	56468705	56468705	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaaaggacatctgtgtGggaaagtccagcagaagcaa	15	7	13	6	0	1	2	0	1	1	1	2	4	2	4	1	2	2	3	1	2	5	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ERC2_ENST00000288221,trunk,malignant_melanoma,0,1	ERC2_ENST00000288221	NM_015576	exon2	c.C331A	p.H111N	CTGTGTGGGAAAG	.	31	2	41	0	.	0	T	56468705	G	T	56468705	3	4	6	1	0	0	0	0	1	0	0	0	5239	1348	47	3	2596	3	ERC2	3	56468705	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3799888	56468705	141553725	58	703											
OR5AC2	81050	hgsc.bcm.edu;bcgsc.ca	37	chr3	97806872	97806872	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tttacacgattataattcccCtgctaaacccatttatttac	12	16	2	11	1	0	0	0	0	0	0	1	1	1	0	3	0	4	1	3	0	7	10	rs377586613	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_054106	exon1	c.C856A	p.L286M	ATTCCCCTGCTAA	.	48	4	62	0	.	.	A	97806872	C	A	97806872	3	1	6	1	0	0	0	0	1	0	0	0	11188	680	24	3	858	3	OR5AC2	3	97806872	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	41338167	97806872	100215558	59	704											
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	100963395	100963395	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	accaccgtcaaatattaactCtttttccatggatgcatctg	11	14	5	11	1	3	0	1	0	2	0	4	1	4	1	3	1	2	1	3	1	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016247	exon13	c.G1780A	p.E594K	TTAACTCTTTTTC	.	57	28	58	0	.	.	T	100963395	C	T	100963395	3	4	6	1	0	0	0	0	1	0	0	0	7773	922	32	3	1973	3	IMPG2	3	100963395	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3156523	100963395	97059035	60	705											
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	111604232	111604232	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcggcagagggaggaaagActcagggagcaggaaatgga	14	2	19	6	2	1	2	1	0	0	2	1	7	1	7	0	7	1	2	0	7	2	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PHLDB2_ENST00000431670,NS,carcinoma,0,2	PHLDB2_ENST00000431670	NM_001134437	exon3	c.A1389G	p.R463R	GGAAAGACTCAGG	.	22	15	27	0	.	0	G	111604232	A	G	111604232	2	3	6	1	0	0	0	0	0	0	0	1	11900	272	10	4		4	PHLDB2	3	111604232	Silent	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	10640837	111604232	86418198	61	706											
TOPBP1	11073	hgsc.bcm.edu;bcgsc.ca	37	chr3	133337058	133337058	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aagatttctttcttgttaccCtgtttagcaatttctgaatc	9	19	5	8	0	3	2	0	1	3	1	4	2	3	2	1	0	2	3	1	0	5	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007027	exon21	c.G3591T	p.Q1197H	GTTACCCTGTTTA	.	60	4	72	0	.	.	A	133337058	C	A	133337058	3	1	6	1	0	0	0	0	1	0	0	0	16430	695	24	3	1009	3	TOPBP1	3	133337058	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	21732826	133337058	64685372	62	707											
COPB2	9276	hgsc.bcm.edu	37	chr3	139097937	139097937	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggatgaacagcaatacagcGaatgtagtctgagtgtgctt	12	11	12	6	1	1	2	0	2	1	0	1	4	1	3	0	1	5	3	0	1	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	COPB2,caecum,carcinoma,0,1	COPB2	NM_004766	exon4	c.C307A	p.R103S	TACAGCGAATGTA	.	65	3	49	0	.	0	T	139097937	G	T	139097937	3	4	6	1	0	0	0	0	1	0	0	0	3752	1058	37	2	2489	2	COPB2	3	139097937	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	5760879	139097937	58924493	63	708											
IGSF10	285313	hgsc.bcm.edu	37	chr3	151156014	151156014	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagtataatctccttcctccGctaccccaactttgttgaag	10	13	5	13	1	1	1	0	1	1	0	4	1	3	1	5	0	2	3	5	0	6	6	rs377142937		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	IGSF10,NS,carcinoma,0,1	IGSF10	NM_178822	exon6	c.C6335T	p.A2112V	TCCTCCGCTACCC	.	45	3	72	0	.	0	A	151156014	G	A	151156014	3	1	6	1	0	0	0	0	1	0	0	0	7641	1087	38	1	1540	1	IGSF10	3	151156014	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	12058077	151156014	46866416	64	709											
ECT2	1894	hgsc.bcm.edu;bcgsc.ca	37	chr3	172473321	172473321	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	taaagataaaagaaagttgtCctggaaaatcggatgaaaaa	21	8	9	3	1	0	3	0	1	0	2	2	5	1	5	1	2	0	1	1	2	9	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001258315	exon4	c.C259A	p.P87T	AGTTGTCCTGGAA	.	86	4	65	0	.	.	A	172473321	C	A	172473321	3	1	6	1	0	0	0	0	1	0	0	0	4927	870	30	3		3	ECT2	3	172473321	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	21317307	172473321	25549109	65	710											
ATP11B	23200	hgsc.bcm.edu;bcgsc.ca	37	chr3	182583433	182583433	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cccatcttaacaacttatccCatcttacaaccagttcctct	11	13	1	16	0	3	0	0	0	3	0	5	0	5	0	4	0	4	1	4	0	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014616	exon13	c.C1390A	p.H464N	TTATCCCATCTTA	.	73	4	86	0	.	.	A	182583433	C	A	182583433	3	1	6	1	0	0	0	0	1	0	0	0	1119	594	21	3	1440	3	ATP11B	3	182583433	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	10110112	182583433	15438997	66	711											
MAP3K13	9175	hgsc.bcm.edu	37	chr3	185184616	185184616	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgcctttattctgcaggcGtgagcaagcagtggaaaaga	11	11	12	7	1	1	2	0	1	1	1	1	3	1	3	1	2	4	3	1	2	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MAP3K13_ENST00000424227,NS,carcinoma,0,2	MAP3K13_ENST00000424227	NM_004721	exon10	c.G1508A	p.R503H	GCAGGCGTGAGCA	.	43	2	44	0	.	0	A	185184616	G	A	185184616	3	1	6	1	0	0	0	0	1	0	0	0	9297	1145	40	1	1542	1	MAP3K13	3	185184616	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2601183	185184616	12837814	67	712											
OPA1	4976	hgsc.bcm.edu	37	chr3	193372782	193372782	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggatatcaagcttaaacagtGgactgataaacaacttccta	16	10	7	8	0	1	1	1	1	0	0	2	3	2	3	1	2	4	1	1	2	8	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_130837	exon22	c.G2144A	p.W715X	AACAGTGGACTGA	.	76	4	76	0	.	.	A	193372782	G	A	193372782	4	1	6	1	0	0	0	0	0	1	0	0	10919	1357	47	3	2230	3	OPA1	3	193372782	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	8188166	193372782	4649648	68	713											
MUC20	200958	hgsc.bcm.edu	37	chr3	195452841	195452841	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggtgaaggcctcgtccacctCcgatccaccagctctgcctg	6	8	10	17	2	1	1	0	1	1	0	5	2	4	1	7	2	2	1	7	2	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC20,trunk,malignant_melanoma,0,1	MUC20	NM_152673	exon3	c.C854A	p.S285Y	CCACCTCCGATCC	.	48	4	51	0	.	0	A	195452841	C	A	195452841	3	1	6	1	0	0	0	0	1	0	0	0	10024	855	30	3	864	3	MUC20	3	195452841	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2080059	195452841	2569589	69	714											
MUC4	4585	broad.mit.edu	37	chr3	195505762	195505762	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gacctgtggatactgaggaaAggctggtgacaggaagaggg	12	6	18	5	0	0	3	0	2	0	1	0	7	0	6	1	6	1	1	1	6	3	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC4_ENST00000463781,NS,carcinoma,-1,4	MUC4	NM_018406	exon2	c.T12689C	p.L4230P	GAGGAAAGGCTGG	.	65	7	40	1	.	1505	G	195505762	A	G	195505762	3	3	6	1	0	0	0	0	1	0	0	0	10026	72	3	4		4	MUC4	3	195505762	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	52921	195505762	2516668	70	715											
MUC4	4585	hgsc.bcm.edu	37	chr3	195509559	195509559	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcGgtgacaggaagagaggtggc	10	7	20	4	1	0	3	0	2	0	1	1	7	0	6	0	6	1	1	0	6	2	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC4_ENST00000463781,NS,carcinoma,-1,1	MUC4_ENST00000463781	NM_018406	exon2	c.C8892T	p.T2964T	AGTGTCGGTGACA	.	97	5	128	0	.	-1	A	195509559	G	A	195509559	2	1	6	1	0	0	0	0	0	0	0	1	10026	1103	39	1		1	MUC4	3	195509559	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3797	195509559	2512871	71	716											
LGI2	55203	hgsc.bcm.edu;bcgsc.ca	37	chr4	25014069	25014069	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacacatcgttcttggagttGaacgtatccactgaaaccga	12	11	8	10	3	1	2	0	2	1	0	3	4	2	3	2	1	3	3	2	1	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018176	exon7	c.C708A	p.F236L	GGAGTTGAACGTA	.	52	4	59	0	.	.	T	25014069	G	T	25014069	3	4	6	1	0	0	0	0	1	0	0	0	8792	1281	45	3	937	3	LGI2	4	25014069	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		25014069	166140207	72	717											
HTN1	3346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	70918808	70918808	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccaactatgaagttttttgtCtttgctttagtcttggctct	6	20	7	8	0	3	1	0	1	3	0	3	1	3	1	1	1	2	3	1	1	4	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002159	exon2	c.C15T	p.V5V	TTTTGTCTTTGCT	.	57	17	93	0	.	.	T	70918808	C	T	70918808	2	4	6	1	0	0	0	0	0	0	0	1	7478	900	32	3		3	HTN1	4	70918808	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	45904739	70918808	120235468	73	718											
THAP6	152815	hgsc.bcm.edu	37	chr4	76452236	76452236	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aattagatcatgtgatcggcGagctagaggatacaaaggaa	16	8	12	5	2	1	3	1	1	0	2	2	6	1	5	0	3	2	1	0	3	6	3	rs372598193	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_144721	exon5	c.G481T	p.E161X	ATCGGCGAGCTAG	.	98	4	91	0	.	.	T	76452236	G	T	76452236	4	4	6	1	0	0	0	0	0	1	0	0	15908	1059	37	2	495	2	THAP6	4	76452236	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	5533428	76452236	114702040	74	719											
BMP2K	55589	bcgsc.ca	37	chr4	79832212	79832212	+	Silent	SNP	C	A	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatcttaatacaatactcctCacctcagcccaattatcctc	12	12	2	15	0	3	0	2	0	1	0	6	1	5	0	4	0	3	0	4	0	6	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	BMP2K	NM_198892	exon16	c.C2511A	p.L837L	ACTCCTCACCTCA	.	26	3	55	0	.	169	A	79832212	A	A	79832212	2	1	6	1	0	0	0	0	0	0	0	1	1459	813	29	3		3	BMP2K	4	79832212	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3379976	79832212	111322064	75	720											
MEPE	56955	hgsc.bcm.edu	37	chr4	88767342	88767342	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggcctgcccattccttctcGtggtcttgataatgaaatca	8	13	9	11	1	3	2	1	2	2	0	5	2	4	2	3	2	1	0	3	2	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MEPE,NS,carcinoma,0,1	MEPE	NM_020203	exon4	c.G1322A	p.R441H	CTTCTCGTGGTCT	.	36	2	52	1	.	0	A	88767342	G	A	88767342	3	1	6	1	0	0	0	0	1	0	0	0	9528	1145	40	1	1332	1	MEPE	4	88767342	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	8935130	88767342	102386934	76	721											
MMRN1	22915	hgsc.bcm.edu	37	chr4	90816624	90816624	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcactggaggcattggaggcGttggaggcactggaggcgtg	7	7	20	7	2	0	0	0	0	0	0	0	4	0	4	0	8	0	4	0	8	0	2	rs139015467		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MMRN1,NS,carcinoma,0,1	MMRN1	NM_007351	exon1	c.G502A	p.V168I	GGAGGCGTTGGAG	.	45	2	77	0	0.000	0	A	90816624	G	A	90816624	3	1	6	1	0	0	0	0	1	0	0	0	9719	1145	40	1	504	1	MMRN1	4	90816624	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2049282	90816624	100337652	77	722											
METAP1	23173	hgsc.bcm.edu	37	chr4	99916973	99916973	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggccaagctccagtgtccCacttgcatcaagctgggcat	9	8	11	13	0	1	0	1	0	0	0	3	1	3	0	3	2	3	4	3	2	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015143	exon1	c.C69A	p.P23P	GTGTCCCACTTGC	.	61	4	68	0	.	.	A	99916973	C	A	99916973	2	1	6	1	0	0	0	0	0	0	0	1	9536	581	21	3		3	METAP1	4	99916973	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	9100349	99916973	91237303	78	723											
CCNA2	890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122739257	122739257	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atgctgtggtgctttgaggtAggtctggtgaaggtccatga	7	13	16	5	0	1	3	0	3	1	0	2	3	2	3	1	5	2	3	1	5	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001237	exon7	c.T1192C	p.Y398H	TGAGGTAGGTCTG	.	28	8	49	0	.	.	G	122739257	A	G	122739257	3	3	6	1	0	0	0	0	1	0	0	0	2932	420	15	4	114	4	CCNA2	4	122739257	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	22822284	122739257	68415019	79	724											
FGB	2244	hgsc.bcm.edu	37	chr4	155491687	155491687	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggggtggacagtacacctGggacatggcaaagcatggca	11	6	15	9	0	0	0	0	0	0	0	0	2	0	2	1	6	2	4	1	6	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005141	exon8	c.G1361T	p.W454L	ACACCTGGGACAT	.	52	4	70	0	.	.	T	155491687	G	T	155491687	3	4	6	1	0	0	0	0	1	0	0	0	5864	1357	47	3	1391	3	FGB	4	155491687	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	32752430	155491687	35662589	80	725											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1077985	1077985	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtcacgggcaatggccTgcagtaggcgcggtgccccc	5	6	15	15	4	1	0	1	0	0	0	1	0	1	0	4	4	3	3	4	4	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006598	exon12	c.A1592G	p.Q531R	ATGGCCTGCAGTA	.	44	18	55	0	.	.	C	1077985	T	C	1077985	3	2	6	1	0	0	0	0	1	0	0	0	14443	1580	55	4	1711	4	SLC12A7	5	1077985	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09		1077985	179837275	81	726											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5318295	5318295	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agacgaggtccgtgcagtgcCtggctgggggccggccggcc	4	5	19	13	4	0	1	0	0	0	1	1	2	1	1	5	6	2	2	5	6	0	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_139056	exon22	c.C3460T	p.L1154L	CAGTGCCTGGCTG	.	21	14	29	0	.	.	T	5318295	C	T	5318295	2	4	6	1	0	0	0	0	0	0	0	1	260	680	24	3		3	ADAMTS16	5	5318295	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4240310	5318295	175596965	82	727											
DNAH5	1767	hgsc.bcm.edu	37	chr5	13820578	13820578	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gatgaccttcagtttccaagGaggatggttgattaaaccag	12	11	11	7	0	1	2	1	2	0	0	2	5	2	4	3	3	1	2	3	3	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DNAH5,NS,carcinoma,0,1	DNAH5	NM_001369	exon41	c.C6718A	p.P2240T	TCCAAGGAGGATG	.	36	3	31	0	.	0	T	13820578	G	T	13820578	3	4	6	1	0	0	0	0	1	0	0	0	4632	1174	41	3	7312	3	DNAH5	5	13820578	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	8502283	13820578	167094682	83	728											
DNAH5	1767	hgsc.bcm.edu	37	chr5	13859644	13859644	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaccgtcatccagctctCgatgatgtctgttgagttgg	6	14	11	10	2	3	2	1	2	2	0	5	3	4	2	2	1	2	4	2	1	0	3	rs147339019	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DNAH5,NS,malignant_melanoma,0,1	DNAH5	NM_001369	exon30	c.G4867T	p.E1623X	AGCTCTCGATGAT	.	39	2	45	0	.	0	A	13859644	C	A	13859644	4	1	6	1	0	0	0	0	0	1	0	0	4632	893	31	2	9207	2	DNAH5	5	13859644	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	39066	13859644	167055616	84	729											
PDZD2	23037	hgsc.bcm.edu	37	chr5	32093091	32093091	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgggatcgaaatctacCatcctaactctcattcagga	12	11	7	11	1	4	0	3	0	2	0	7	3	5	2	2	2	2	0	2	2	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_178140	exon20	c.C7806A	p.T2602T	ATCTACCATCCTA	.	80	4	77	0	.	.	A	32093091	C	A	32093091	2	1	6	1	0	0	0	0	0	0	0	1	11748	581	21	3		3	PDZD2	5	32093091	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	18233447	32093091	148822169	85	730											
MTMR12	54545	hgsc.bcm.edu	37	chr5	32274182	32274182	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatgctgacaggaatcttcCtggacatacttcagtactgt	10	12	8	11	0	2	1	1	1	1	0	3	3	3	3	2	2	3	2	2	2	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MTMR12,NS,carcinoma,0,1	MTMR12	NM_001040446	exon3	c.G189T	p.Q63H	ATCTTCCTGGACA	.	42	2	48	0	.	0	A	32274182	C	A	32274182	3	1	6	1	0	0	0	0	1	0	0	0	9989	680	24	3	2110	3	MTMR12	5	32274182	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	181091	32274182	148641078	86	731											
PTGER4	5734	hgsc.bcm.edu	37	chr5	40692076	40692076	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgccgcattggcgggtccCgcagggagcgctccggacag	5	6	16	14	5	1	0	0	0	1	0	3	2	3	2	3	4	2	3	3	4	0	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PTGER4,NS,neuroblastoma,0,1	PTGER4	NM_000958	exon3	c.C1063A	p.R355S	GGGTCCCGCAGGG	.	20	2	21	0	.	0	A	40692076	C	A	40692076	3	1	6	1	0	0	0	0	1	0	0	0	12795	652	23	2	1069	2	PTGER4	5	40692076	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8417894	40692076	140223184	87	732											
NNT	23530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	43704461	43704461	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtgatgccaagaaaacAtgtgacgcgctccaggcgaa	13	6	12	10	3	0	3	0	2	0	1	1	4	1	3	2	2	2	1	2	2	5	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_182977	exon22	c.A3216G	p.T1072T	GAAAACATGTGAC	.	32	11	38	0	.	.	G	43704461	A	G	43704461	2	3	6	1	0	0	0	0	0	0	0	1	10557	204	8	4		4	NNT	5	43704461	Silent	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	3012385	43704461	137210799	88	733											
BDP1	55814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	70754623	70754623	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agccatgctcagacagatacCgaatatacaaagcccagaaa	18	5	7	11	1	1	3	1	0	0	3	1	4	1	3	3	0	5	1	3	0	6	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018429	exon2	c.C430A	p.R144R	AGATACCGAATAT	.	41	4	52	0	.	.	A	70754623	C	A	70754623	2	1	6	1	0	0	0	0	0	0	0	1	1393	644	23	2		2	BDP1	5	70754623	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	27050162	70754623	110160637	89	734											
CHD1	1105	hgsc.bcm.edu	37	chr5	98192174	98192174	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggagccataaggagatctCtgatctagtggtgacctagg	10	10	13	8	0	2	3	0	2	2	1	3	5	2	4	2	4	1	0	2	4	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CHD1,NS,carcinoma,0,1	CHD1	NM_001270	exon35	c.G5043T	p.Q1681H	AGATCTCTGATCT	.	47	2	49	0	.	0	A	98192174	C	A	98192174	3	1	6	1	0	0	0	0	1	0	0	0	3345	912	32	3	93	3	CHD1	5	98192174	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	27437551	98192174	82723086	90	735											
ST8SIA4	7903	hgsc.bcm.edu	37	chr5	100222104	100222104	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	attcactgtctaacagaatgCcagaatttccaacaactgca	15	10	5	11	0	2	2	1	0	1	2	3	2	3	2	2	0	5	1	2	0	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ST8SIA4,NS,lymphoid_neoplasm,0,1	ST8SIA4	NM_175052	exon3	c.G446A	p.G149D	AGAATGCCAGAAT	.	43	2	49	0	.	0	T	100222104	C	T	100222104	3	4	6	1	0	0	0	0	1	0	0	0	15290	739	26	3	649	3	ST8SIA4	5	100222104	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2029930	100222104	80693156	91	736											
FER	2241	hgsc.bcm.edu	37	chr5	108382829	108382829	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagcaatatgatcatccCaatattgtcaaacttatagg	15	12	5	9	0	3	1	3	1	0	0	4	1	4	1	1	1	2	1	1	1	8	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FER,NS,carcinoma,0,1	FER	NM_005246	exon16	c.C1854A	p.P618P	TCATCCCAATATT	.	50	2	48	0	.	0	A	108382829	C	A	108382829	2	1	6	1	0	0	0	0	0	0	0	1	5846	581	21	3		3	FER	5	108382829	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8160725	108382829	72532431	92	737											
APC	324	hgsc.bcm.edu	37	chr5	112175124	112175124	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttcaagatgtagttcattatCatctttgtcatcagctgaag	11	16	7	7	0	6	2	5	1	1	1	6	2	6	2	0	0	1	3	0	0	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	APC,colon,carcinoma,0,3	APC	NM_001127510	exon17	c.C3833T	p.S1278L	CATTATCATCTTT	.	49	2	35	0	.	0	T	112175124	C	T	112175124	3	4	6	1	0	0	0	0	1	0	0	0	759	838	29	3	3891	3	APC	5	112175124	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3792295	112175124	68740136	93	738											
SEMA6A	57556	hgsc.bcm.edu	37	chr5	115831161	115831161	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagttccacagacaaacaatGcatcatcgtttttctttaga	13	14	5	9	1	2	2	1	0	1	2	4	2	3	2	1	0	2	3	1	0	4	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_020796	exon6	c.C392A	p.A131E	AACAATGCATCAT	.	69	4	76	0	.	.	T	115831161	G	T	115831161	3	4	6	1	0	0	0	0	1	0	0	0	14093	1319	46	3	2756	3	SEMA6A	5	115831161	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3656037	115831161	65084099	94	739											
KLHL3	26249	hgsc.bcm.edu	37	chr5	136997638	136997638	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctaggtaagagaggaagtCggacatgttccatcagcttt	11	10	11	9	1	1	1	1	0	0	1	3	4	2	3	2	3	1	3	2	3	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KLHL3,colon,carcinoma,-1,1	KLHL3	NM_017415	exon7	c.G719T	p.R240L	GGAAGTCGGACAT	.	47	2	73	0	.	-1	A	136997638	C	A	136997638	3	1	6	1	0	0	0	0	1	0	0	0	8426	884	31	2	1080	2	KLHL3	5	136997638	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	21166477	136997638	43917622	95	740											
HSPA9	3313	hgsc.bcm.edu;bcgsc.ca	37	chr5	137894311	137894311	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctgacacactttaatttcCacttgcgtttgaccatcagc	9	13	5	14	1	1	2	1	2	0	0	2	2	2	2	3	0	2	1	3	0	1	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004134	exon12	c.G1446T	p.V482V	AATTTCCACTTGC	.	52	4	53	0	.	.	A	137894311	C	A	137894311	2	1	6	1	0	0	0	0	0	0	0	1	7460	581	21	3		3	HSPA9	5	137894311	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	896673	137894311	43020949	96	741											
SLC25A2	83884	hgsc.bcm.edu	37	chr5	140683227	140683227	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgacgtaggccataagtgccGggccggtgcccttgtagaag	8	7	15	11	4	0	1	0	0	0	1	0	2	0	1	4	3	2	2	4	3	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLC25A2,NS,carcinoma,0,1	SLC25A2	NM_031947	exon1	c.C206G	p.P69R	AGTGCCGGGCCGG	.	17	2	16	0	.	0	C	140683227	G	C	140683227	3	2	6	1	0	0	0	0	1	0	0	0	14537	1116	39	5	703	5	SLC25A2	5	140683227	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2788916	140683227	40232033	97	742											
C5orf58	133874	hgsc.bcm.edu;bcgsc.ca	37	chr5	169661164	169661164	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gagaaattgcagaaattctcCctgctcaggaaaaggtagag	15	8	11	7	0	2	3	1	0	1	3	3	5	2	4	1	2	2	3	1	2	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001102609	exon2	c.C25A	p.P9T	ATTCTCCCTGCTC	.	69	4	60	0	.	.	A	169661164	C	A	169661164	3	1	6	1	0	0	0	0	1	0	0	0	2328	623	22	3	27	3	C5orf58	5	169661164	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	28977937	169661164	11254096	98	743											
MXD3	83463	broad.mit.edu	37	chr5	176738408	176738408	+	Frame_Shift_Del	DEL	G	G	-																															gtcctgcgcgccaggagcctGggggggtcgcttcttcctcc																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	MXD3	NM_001142935	exon2	c.148delC	p.Q50fs	GAGCCTGGGGGGG	.	12	4	6	0	.	13	-	176738408	G	-	176738408	7	5	6	1	0	1	0	1	0	0	0	0	10048	1357	47	0	573	0	MXD3	5	176738408	Frame_Shift_Del	DEL	G	TCGA-4G-AAZO-01A-12D-A417-09	7077244	176738408	4176852	99	744											
F13A1	2162	hgsc.bcm.edu	37	chr6	6305670	6305670	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catagaaagactgccctctgCggacaatcagcttgttgttt	10	12	9	10	1	2	2	1	0	1	2	2	3	2	3	1	1	3	3	1	1	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	F13A1,NS,adenocarcinoma,0,2	F13A1	NM_000129	exon3	c.G233A	p.R78H	CCTCTGCGGACAA	.	47	2	55	0	.	0	T	6305670	C	T	6305670	3	4	6	1	0	0	0	0	1	0	0	0	5368	768	27	1	2017	1	F13A1	6	6305670	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		6305670	164809397	100	745											
RREB1	6239	bcgsc.ca	37	chr6	7187719	7187719	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgtgtgagaagatttGcactacccagcaccagctga	10	8	9	14	0	0	3	0	2	0	2	0	4	0	3	4	0	4	3	4	0	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	RREB1	NM_001003700	exon5	c.G224T	p.C75F	AGATTTGCACTAC	.	71	4	93	0	.	242	T	7187719	T	T	7187719	3	4	6	1	0	0	0	0	1	0	0	0	13731	1319	46	3	230	3	RREB1	6	7187719	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	882049	7187719	163927348	101	746											
GPLD1	2822	hgsc.bcm.edu	37	chr6	24448239	24448239	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catctgcagccaagagagtcCagcccaagttacagtagatg	13	7	10	11	0	1	2	0	0	1	2	2	3	2	2	3	0	4	3	3	0	4	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001503	exon17	c.G1544T	p.W515L	AGAGTCCAGCCCA	.	73	3	54	0	.	.	A	24448239	C	A	24448239	3	1	6	1	0	0	0	0	1	0	0	0	6654	595	21	3	1014	3	GPLD1	6	24448239	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	17260520	24448239	146666828	102	747											
VARS	7407	hgsc.bcm.edu	37	chr6	31752382	31752382	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggggcgcacctcaatgtcaGagatggcggagttgagggtg	8	7	19	7	2	2	2	2	1	0	1	2	4	2	3	1	5	0	2	1	5	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	VARS,NS,carcinoma,0,1	VARS	NM_006295	exon11	c.C1457A	p.S486Y	ATGTCAGAGATGG	.	20	2	24	0	.	0	T	31752382	G	T	31752382	3	4	6	1	0	0	0	0	1	0	0	0	17183	942	33	3	2417	3	VARS	6	31752382	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	7304143	31752382	139362685	103	748											
SKIV2L	6499	hgsc.bcm.edu	37	chr6	31935499	31935499	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaccacccccaggtctcctCgaactccaccagcagagtat	10	7	7	17	1	1	2	0	1	1	1	4	3	2	2	6	1	2	2	6	1	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SKIV2L_ENST00000375394,colon,carcinoma,0,2	SKIV2L_ENST00000375394	NM_006929	exon22	c.C2591A	p.S864X	TCTCCTCGAACTC	.	45	4	42	0	.	0	A	31935499	C	A	31935499	4	1	6	1	0	0	0	0	0	1	0	0	14414	893	31	2	2677	2	SKIV2L	6	31935499	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	183117	31935499	139179568	104	749											
NOTCH4	4855	hgsc.bcm.edu;bcgsc.ca	37	chr6	32169249	32169249	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagtgcccgttgtggaagtGatcatggcagtactggtcat	9	11	13	8	1	2	1	2	1	0	0	2	2	2	2	1	3	2	3	1	3	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004557	exon22	c.C3784A	p.H1262N	GGAAGTGATCATG	.	98	5	43	0	.	.	T	32169249	G	T	32169249	3	4	6	1	0	0	0	0	1	0	0	0	10598	1290	45	3	2263	3	NOTCH4	6	32169249	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	233750	32169249	138945818	105	750											
ICK	22858	hgsc.bcm.edu;bcgsc.ca	37	chr6	52880912	52880912	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcgtttcttgggatccCactgaagcatgtctctcagg	6	14	11	10	1	3	1	1	1	2	0	6	2	4	2	1	3	1	2	1	3	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016513	exon9	c.G800T	p.W267L	GGATCCCACTGAA	.	79	4	58	0	.	.	A	52880912	C	A	52880912	3	1	6	1	0	0	0	0	1	0	0	0	7528	595	21	3	1126	3	ICK	6	52880912	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	20711663	52880912	118234155	106	751											
KLHL31	401265	hgsc.bcm.edu	37	chr6	53519311	53519311	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagcgaatattgctcaaaaGatctgcagcgtattttactc	14	12	7	8	2	2	1	1	0	1	1	3	2	2	1	0	0	5	3	0	0	7	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KLHL31,NS,carcinoma,0,1	KLHL31	NM_001003760	exon2	c.C760A	p.L254I	TCAAAAGATCTGC	.	43	2	60	0	.	0	T	53519311	G	T	53519311	3	4	6	1	0	0	0	0	1	0	0	0	8428	942	33	3	1152	3	KLHL31	6	53519311	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	638399	53519311	117595756	107	752											
CD109	135228	hgsc.bcm.edu	37	chr6	74492445	74492445	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acatgtccgaaagcattttcCagagacttggatttggctag	11	12	10	8	1	0	1	0	0	0	1	2	4	2	2	2	2	1	2	2	2	2	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CD109,NS,carcinoma,0,1	CD109	NM_133493	exon18	c.C2072A	p.P691Q	ATTTTCCAGAGAC	.	48	2	91	0	.	0	A	74492445	C	A	74492445	3	1	6	1	0	0	0	0	1	0	0	0	2985	594	21	3	2142	3	CD109	6	74492445	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	20973134	74492445	96622622	108	753											
ZNF292	23036	ucsc.edu;bcgsc.ca	37	chr6	87969651	87969651	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agaagccagtttcccaatccCttgagtttccaacaagatac	13	10	6	12	0	0	3	0	1	0	2	3	3	3	3	4	0	3	2	4	0	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ZNF292	NM_015021	exon8	c.C6304A	p.L2102I	CAATCCCTTGAGT	.	41	4	71	0	.	479	A	87969651	C	A	87969651	3	1	6	1	0	0	0	0	1	0	0	0	17883	681	24	3	6334	3	ZNF292	6	87969651	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	13477206	87969651	83145416	109	754											
LAMA2	3908	bcgsc.ca	37	chr6	129588265	129588265	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctcagtcttgttggcctagGcacaggcgagttaacggcac	8	10	12	11	2	2	0	1	0	2	0	3	1	2	0	1	4	1	4	1	4	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	LAMA2	NM_001079823	exon16	c.G2223A	p.R741R	GCCTAGGCACAGG	.	12	3	35	0	.	481	A	129588265	A	A	129588265	2	1	6	1	0	0	0	0	0	0	0	1	8645	1194	42	3		3	LAMA2	6	129588265	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	41618614	129588265	41526802	110	755											
AHI1	54806	hgsc.bcm.edu	37	chr6	135763821	135763821	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgttctcctgcatttagtGagaagaggtgtttgtttggg	6	16	13	6	1	1	2	0	1	1	2	3	3	1	2	1	2	1	4	1	2	2	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001134832	exon13	c.C1811A	p.S604X	TTTAGTGAGAAGA	.	95	4	197	0	.	.	T	135763821	G	T	135763821	4	4	6	1	0	0	0	0	0	1	0	0	410	1294	45	3	1900	3	AHI1	6	135763821	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6175556	135763821	35351246	111	756											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	152647206	152647206	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttcaataacctcttcccttgCtttctggtaatcgtgccatt	7	17	5	12	1	3	0	1	0	2	0	5	0	4	0	3	1	3	2	3	1	3	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_182961	exon80	c.G15325T	p.A5109S	CCCTTGCTTTCTG	.	42	34	48	0	.	.	A	152647206	C	A	152647206	3	1	6	1	0	0	0	0	1	0	0	0	15502	797	28	3	11409	3	SYNE1	6	152647206	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	16883385	152647206	18467861	112	757											
SERAC1	84947	bcgsc.ca	37	chr6	158569934	158569934	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agtatcttggctgatgttgcCaatacttttcttactgcttt	7	19	7	8	0	2	1	0	1	2	0	2	1	2	1	1	1	4	4	1	1	4	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SERAC1	NM_032861	exon5	c.G318T	p.L106F	TGTTGCCAATACT	.	44	4	60	0	.	31	A	158569934	A	A	158569934	3	1	6	1	0	0	0	0	1	0	0	0	14128	593	21	3	1698	3	SERAC1	6	158569934	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5922728	158569934	12545133	113	758											
MRPL18	29074	hgsc.bcm.edu	37	chr6	160218528	160218528	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catggtctaccaaccaacccCgtgggaggcagcctcagact	10	6	10	15	1	2	1	1	0	1	1	2	2	2	2	5	3	4	1	5	3	3	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MRPL18,NS,carcinoma,0,1	MRPL18	NM_014161	exon3	c.C449A	p.P150Q	CAACCCCGTGGGA	.	46	3	79	0	.	0	A	160218528	C	A	160218528	3	1	6	1	0	0	0	0	1	0	0	0	9832	652	23	2	459	2	MRPL18	6	160218528	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1648594	160218528	10896539	114	759											
EIF3B	8662	hgsc.bcm.edu	37	chr7	2411439	2411439	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaattttgaaattttcCgaatgagggagaaacaggta	16	11	9	5	1	1	3	1	2	0	1	2	5	2	3	1	2	1	1	1	2	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037283	exon11	c.C1642A	p.R548R	ATTTTCCGAATGA	.	95	4	89	0	.	.	A	2411439	C	A	2411439	2	1	6	1	0	0	0	0	0	0	0	1	5039	644	23	2		2	EIF3B	7	2411439	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		2411439	156727224	115	760											
FOXK1	221937	hgsc.bcm.edu;bcgsc.ca	37	chr7	4796750	4796750	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagccaagctcgtggaacaGgcattccggaaacggaggca	13	4	14	10	3	0	0	0	0	0	0	2	4	1	3	2	5	4	3	2	5	4	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037165	exon5	c.G1176T	p.Q392H	GGAACAGGCATTC	.	81	4	75	0	.	.	T	4796750	G	T	4796750	3	4	6	1	0	0	0	0	1	0	0	0	6048	991	35	3	1194	3	FOXK1	7	4796750	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2385311	4796750	154341913	116	761											
CYTH3	9265	hgsc.bcm.edu;bcgsc.ca	37	chr7	6226714	6226714	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgttgaatttctttcttccCatggctatctgtttgttcct	5	21	6	9	0	3	1	0	1	3	0	5	1	5	1	2	1	0	4	2	1	2	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004227	exon4	c.G216T	p.M72I	TCTTCCCATGGCT	.	58	4	45	0	.	.	A	6226714	C	A	6226714	3	1	6	1	0	0	0	0	1	0	0	0	4228	594	21	3	1023	3	CYTH3	7	6226714	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1429964	6226714	152911949	117	762											
ABCB5	340273	hgsc.bcm.edu	37	chr7	20766683	20766683	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atagcaactgaagctttggaGaatatacgtactatagtgtc	14	12	9	6	1	0	2	0	1	0	1	1	3	0	2	0	1	5	3	0	1	9	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABCB5_ENST00000404938,bladder,carcinoma,0,2	ABCB5_ENST00000404938	NM_001163941	exon22	c.G2646T	p.E882D	TTTGGAGAATATA	.	47	3	53	0	.	0	T	20766683	G	T	20766683	3	4	6	1	0	0	0	0	1	0	0	0	44	933	33	3	2769	3	ABCB5	7	20766683	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	14539969	20766683	138371980	118	763											
HOXA10	3206	hgsc.bcm.edu	37	chr7	27210430	27210430	+	RNA	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atacagatttgtatttatagTttttttctttttctgcatct	8	24	4	5	0	3	1	0	0	3	1	3	1	3	1	0	0	2	3	0	0	4	11	rs79213620	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTATAGTTTTTTT	.	89	5	96	0	.	.	G	27210430	T	G	27210430	1	3	6	0	1	0	0	0	0	0	0	0	7330	1740	60	4		4	HOXA10	7	27210430	RNA	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	6443747	27210430	131928233	119	764											
TBX20	57057	hgsc.bcm.edu	37	chr7	35271118	35271118	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagaaaattctcattacctCtcaatgtcagtgagcctgga	13	11	7	10	0	3	2	3	1	2	1	5	3	3	3	2	1	2	0	2	1	4	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TBX20_ENST00000408931,colon,carcinoma,-1,1	TBX20_ENST00000408931	NM_001077653	exon6	c.G888T	p.E296D	TTACCTCTCAATG	.	72	3	54	0	.	-1	A	35271118	C	A	35271118	3	1	6	1	0	0	0	0	1	0	0	0	15716	912	32	3	468	3	TBX20	7	35271118	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8060688	35271118	123867545	120	765											
FIGNL1	63979	hgsc.bcm.edu;bcgsc.ca	37	chr7	50513283	50513283	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtttcctggctgaagcttctGggaggggaatataaagcctt	9	12	13	7	0	1	1	0	1	1	0	2	3	2	3	2	4	2	3	2	4	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001042762	exon4	c.C1703A	p.P568Q	GCTTCTGGGAGGG	.	52	4	34	0	.	.	T	50513283	G	T	50513283	3	4	6	1	0	0	0	0	1	0	0	0	5925	1348	47	3	325	3	FIGNL1	7	50513283	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	15242165	50513283	108625380	121	766											
CCT6A	908	hgsc.bcm.edu	37	chr7	56119584	56119584	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	accccaaggccgaggtggccCgagcgcaggcggcgctggcg	6	2	18	15	6	0	0	0	0	0	0	0	2	0	0	4	6	1	2	4	6	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001762	exon1	c.C43A	p.R15R	GTGGCCCGAGCGC	.	78	4	58	0	.	.	A	56119584	C	A	56119584	2	1	6	1	0	0	0	0	0	0	0	1	2979	644	23	2		2	CCT6A	7	56119584	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5606301	56119584	103019079	122	767											
ELN	2006	hgsc.bcm.edu	37	chr7	73470731	73470731	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgtcggaggtgttccCggagtcggaggtgtcccggg	3	9	19	10	4	0	0	0	0	0	0	4	3	2	3	3	7	0	1	3	7	0	1	rs376496267	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ELN,NS,carcinoma,0,1	ELN	NM_001081753	exon20	c.C1296A	p.P432P	TGTTCCCGGAGTC	.	37	3	39	0	.	0	A	73470731	C	A	73470731	2	1	6	1	0	0	0	0	0	0	0	1	5099	639	23	2		2	ELN	7	73470731	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	17351147	73470731	85667932	123	768											
CCL26	10344	ucsc.edu;bcgsc.ca	37	chr7	75401265	75401265	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atagcttcgcacccaggtccAgggaaggggcttgtggctgt	7	9	15	10	1	0	0	0	0	0	0	2	1	1	1	2	5	1	4	2	5	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CCL26	NM_006072	exon3	c.T130C	p.W44R	AGGTCCAGGGAAG	.	25	4	21	0	.	5	G	75401265	A	G	75401265	3	3	6	1	0	0	0	0	1	0	0	0	2918	188	7	4	162	4	CCL26	7	75401265	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	1930534	75401265	83737398	124	769											
DNAJC2	27000	bcgsc.ca	37	chr7	102982346	102982346	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagcatttctgtttctcctCttaacaaaagcttcaaacca	13	13	4	11	0	4	0	1	0	3	0	5	1	4	0	2	0	4	3	2	0	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DNAJC2	NM_001129887	exon2	c.G120T	p.K40N	TCTCCTCTTAACA	.	49	4	40	0	.	46	A	102982346	A	A	102982346	3	1	6	1	0	0	0	0	1	0	0	0	4666	912	32	3	1809	3	DNAJC2	7	102982346	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	27581081	102982346	56156317	125	770											
MGAM	8972	hgsc.bcm.edu	37	chr7	141754596	141754596	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgaagttccagtccctCtgaacatacccagcatgcca	11	9	8	13	0	1	2	0	2	1	0	3	2	3	2	4	1	4	3	4	1	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MGAM_ENST00000549489,NS,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon27	c.C3202A	p.L1068M	GTCCCTCTGAACA	.	75	3	103	0	.	0	A	141754596	C	A	141754596	3	1	6	1	0	0	0	0	1	0	0	0	9591	912	32	3	3304	3	MGAM	7	141754596	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	38772250	141754596	17384067	126	771											
OR2A5	393046	hgsc.bcm.edu	37	chr7	143748127	143748127	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcctggtggggccgctCtgcctggtgctggtctccta	2	13	13	13	1	3	0	1	0	2	0	5	0	4	0	4	5	2	2	4	5	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OR2A5,right_lower_lobe,carcinoma,0,1	OR2A5	NM_012365	exon1	c.C633A	p.L211L	GCCGCTCTGCCTG	.	44	2	53	0	.	0	A	143748127	C	A	143748127	2	1	6	1	0	0	0	0	0	0	0	1	11029	900	32	3		3	OR2A5	7	143748127	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1993531	143748127	15390536	127	772											
NOS3	4846	hgsc.bcm.edu	37	chr7	150698924	150698924	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcagcgccgtgaagatctcCgcctcgctcatgggcacggt	6	7	13	15	6	2	2	1	1	1	1	4	2	2	2	3	2	1	3	3	2	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NOS3,NS,carcinoma,0,1	NOS3	NM_001160111	exon12	c.C1518A	p.S506S	GATCTCCGCCTCG	.	31	3	24	0	.	0	A	150698924	C	A	150698924	2	1	6	1	0	0	0	0	0	0	0	1	10591	639	23	2		2	NOS3	7	150698924	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	6950797	150698924	8439739	128	773											
CDCA2	157313	hgsc.bcm.edu;bcgsc.ca	37	chr8	25364722	25364722	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagtttacatttggaaaaaaAtggaaatcacacaccatcct	18	10	5	8	0	1	0	1	0	0	0	2	2	2	2	2	2	1	1	2	2	6	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_152562	exon15	c.A2540T	p.N847I	AAAAAAATGGAAA	.	85	4	89	0	.	.	T	25364722	A	T	25364722	3	4	6	1	0	0	0	0	1	0	0	0	3108	101	4	5	2594	5	CDCA2	8	25364722	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09		25364722	120999300	129	774											
EXTL3	2137	broad.mit.edu	37	chr8	28573668	28573668	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caaccgcatccgcctcacgtGgctcagcttcacgctctttg	6	10	8	17	4	4	0	3	0	1	0	5	0	5	0	3	1	2	4	3	1	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	EXTL3	NM_001440	exon3	c.G92A	p.W31X	TCACGTGGCTCAG	.	17	3	23	0	.	83	A	28573668	G	A	28573668	4	1	6	1	0	0	0	0	0	1	0	0	5355	1357	47	3	94	3	EXTL3	8	28573668	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3208946	28573668	117790354	130	775											
OPRK1	4986	hgsc.bcm.edu	37	chr8	54142028	54142028	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gcgtagagaatgggattcagGctactgttggtatagcctaa	11	11	13	6	1	1	1	1	0	0	1	1	3	1	2	1	3	2	4	1	3	6	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OPRK1,NS,carcinoma,0,2	OPRK1	NM_000912	exon4	c.C972A	p.S324R	ATTCAGGCTACTG	.	18	2	32	0	.	0	T	54142028	G	T	54142028	3	4	6	1	0	0	0	0	1	0	0	0	10933	1194	42	3	174	3	OPRK1	8	54142028	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	25568360	54142028	92221994	131	776											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	56015537	56015537	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcggtgcaagtgttcagCttccgctggtttgtgcacga	5	13	13	10	3	1	0	1	0	0	0	3	1	2	0	1	2	3	6	1	2	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_052898	exon1	c.C489A	p.S163R	GTTCAGCTTCCGC	.	20	6	24	0	.	.	A	56015537	C	A	56015537	3	1	6	1	0	0	0	0	1	0	0	0	17493	796	28	3	491	3	XKR4	8	56015537	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1873509	56015537	90348485	132	777											
CA8	767	bcgsc.ca	37	chr8	61144922	61144922	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaacagagtggagttcCagtggatcagatggagctga	12	8	14	7	0	1	3	1	1	0	2	2	6	2	6	2	3	3	2	2	3	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CA8	NM_004056	exon4	c.G434T	p.W145L	GAGTTCCAGTGGA	.	28	3	38	0	.	31	A	61144922	A	A	61144922	3	1	6	1	0	0	0	0	1	0	0	0	2541	595	21	3	458	3	CA8	8	61144922	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5129385	61144922	85219100	133	778											
CPA6	57094	hgsc.bcm.edu	37	chr8	68658284	68658284	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttataaaggtggctgtgcccCggttgcagaatcttcaaaaa	12	11	10	8	1	2	1	1	0	1	1	2	1	2	1	2	3	2	3	2	3	6	4	rs369835154	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CPA6,caecum,carcinoma,0,1	CPA6	NM_020361	exon1	c.G81T	p.P27P	GTGCCCCGGTTGC	.	31	3	49	0	.	0	A	68658284	C	A	68658284	2	1	6	1	0	0	0	0	0	0	0	1	3817	639	23	2		2	CPA6	8	68658284	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	7513362	68658284	77705738	134	779											
ZFHX4	79776	hgsc.bcm.edu;bcgsc.ca	37	chr8	77617104	77617104	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagatgtccctaacaatgtgGacttgtccaaattcgatggt	12	12	9	8	1	0	1	0	0	0	1	3	3	2	2	2	2	1	0	2	2	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZFHX4,colon,carcinoma,0,1	ZFHX4	NM_024721	exon2	c.G781T	p.D261Y	AATGTGGACTTGT	.	87	4	111	0	.	0	T	77617104	G	T	77617104	3	4	6	1	0	0	0	0	1	0	0	0	17693	1174	41	3	783	3	ZFHX4	8	77617104	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	8958820	77617104	68746918	135	780											
ZFAND1	79752	hgsc.bcm.edu;bcgsc.ca	37	chr8	82626157	82626157	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aatctctaagaccaacctgtGgtaatgacttatcgccatca	13	11	6	11	1	2	2	1	1	1	1	4	2	2	2	3	1	1	1	3	1	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001170796	exon6	c.C476A	p.P159Q	ACCTGTGGTAATG	.	102	5	86	0	.	.	T	82626157	G	T	82626157	3	4	6	1	0	0	0	0	1	0	0	0	17684	1348	47	3	390	3	ZFAND1	8	82626157	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	5009053	82626157	63737865	136	781											
ASAP1	50807	bcgsc.ca	37	chr8	131070296	131070296	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctggcagtcataaatggtCttcactcgcctcactttatt	8	14	7	12	1	4	0	3	0	1	0	5	0	4	0	2	2	0	1	2	2	3	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ASAP1	NM_018482	exon29	c.G3219T	p.K1073N	AATGGTCTTCACT	.	68	4	69	0	.	133	A	131070296	A	A	131070296	3	1	6	1	0	0	0	0	1	0	0	0	1009	912	32	3	178	3	ASAP1	8	131070296	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	48444139	131070296	15293726	137	782											
TSNARE1	203062	hgsc.bcm.edu;bcgsc.ca	37	chr8	143425475	143425475	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccgccttccggaggtcgccCagcttgcgccgcacgacggc	4	5	14	18	7	0	0	0	0	0	0	2	2	1	1	5	3	2	2	5	3	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_145003	exon4	c.G597T	p.L199L	GTCGCCCAGCTTG	.	57	4	63	0	.	.	A	143425475	C	A	143425475	2	1	6	1	0	0	0	0	0	0	0	1	16691	581	21	3		3	TSNARE1	8	143425475	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	12355179	143425475	2938547	138	783											
SLURP1	57152	hgsc.bcm.edu	37	chr8	143823221	143823221	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccgtggggcctggcctcacCtgcctccaccgtcaccagcg	4	6	12	19	3	2	0	2	0	0	0	3	0	3	0	8	3	2	0	8	3	0	0	rs200727790	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLURP1,NS,carcinoma,0,1	SLURP1	NM_020427	exon2	c.G178T	p.E60X	CCTCACCTGCCTC	.	87	4	81	0	.	0	A	143823221	C	A	143823221	4	1	6	1	0	0	0	0	0	1	0	0	14810	695	24	3	141	3	SLURP1	8	143823221	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	397746	143823221	2540801	139	784											
GRINA	2907	bcgsc.ca	37	chr8	145065564	145065564	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctacggtcagccagggtaccCccatggccccagcccctacc	7	5	9	20	1	1	0	1	0	0	0	1	0	1	0	8	3	5	1	8	3	3	3	rs377024859	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GRINA	NM_001009184	exon2	c.C173A	p.P58H	GGTACCCCCATGG	.	39	4	39	0	.	25	A	145065564	A	A	145065564	3	1	6	1	0	0	0	0	1	0	0	0	6826	623	22	3	175	3	GRINA	8	145065564	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1242343	145065564	1298458	140	785											
CDC37L1	55664	bcgsc.ca	37	chr9	4684988	4684988	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaacttggtagcttaGcactgcataattctgagtcc	13	11	8	9	0	1	2	0	1	1	1	2	2	2	2	1	1	5	4	1	1	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CDC37L1	NM_017913	exon2	c.G244T	p.A82S	AGCTTAGCACTGC	.	29	3	44	0	.	19	T	4684988	T	T	4684988	3	4	6	1	0	0	0	0	1	0	0	0	3091	971	34	3	250	3	CDC37L1	9	4684988	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		4684988	136528443	141	786											
AQP7	364	hgsc.bcm.edu	37	chr9	33385274	33385274	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccactggcacccaccacCagttctccccattgctgcag	8	7	6	20	0	1	0	0	0	1	0	2	0	1	0	7	1	2	4	7	1	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	AQP7,NS,carcinoma,0,1	AQP7	NM_001170	exon8	c.G758T	p.W253L	CACCACCAGTTCT	.	79	4	86	0	.	0	A	33385274	C	A	33385274	3	1	6	1	0	0	0	0	1	0	0	0	828	595	21	3	274	3	AQP7	9	33385274	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	28700286	33385274	107828157	142	787											
C9orf131	138724	hgsc.bcm.edu	37	chr9	35043842	35043842	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagagagagttccctggaaGatccatccagatataagccc	14	7	10	10	0	0	4	0	0	0	4	3	7	3	5	4	1	1	1	4	1	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C9orf131,NS,carcinoma,0,1	C9orf131	NM_203299	exon2	c.G1216T	p.D406Y	CTGGAAGATCCAT	.	35	2	49	0	.	0	T	35043842	G	T	35043842	3	4	6	1	0	0	0	0	1	0	0	0	2475	942	33	3	1238	3	C9orf131	9	35043842	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1658568	35043842	106169589	143	788											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35698454	35698454	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggcatggccttgtacagctgCattggctgcctcacacagat	8	10	11	12	0	1	1	1	0	0	1	1	1	1	1	2	3	4	5	2	3	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006289	exon55	c.G7237A	p.A2413T	CAGCTGCATTGGC	.	14	4	17	0	.	.	T	35698454	C	T	35698454	3	4	6	1	0	0	0	0	1	0	0	0	16007	710	25	3	400	3	TLN1	9	35698454	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	654612	35698454	105514977	144	789											
SMC5	23137	hgsc.bcm.edu	37	chr9	72967112	72967112	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttttaatacttacagctcctGcaaaatcttccttattctga	11	17	3	10	0	2	1	0	1	2	0	4	1	4	1	2	0	4	2	2	0	6	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SMC5,head_neck,malignant_melanoma,0,1	SMC5	NM_015110	exon25	c.G3171A	p.L1057L	GCTCCTGCAAAAT	.	33	3	54	0	.	0	A	72967112	G	A	72967112	2	1	6	1	0	0	0	0	0	0	0	1	14840	1306	46	3		3	SMC5	9	72967112	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	37268658	72967112	68246319	145	790											
LOC286238	0	bcgsc.ca	37	chr9	91266948	91266948	+	RNA	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgttggaaagcattaggaCagatgtataaggagcatata	16	10	11	4	0	0	1	0	0	0	1	0	4	0	4	0	3	2	4	0	3	6	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTAGGACAGATGT	.	34	3	86	0	.	.	T	91266948	T	T	91266948	1	4	6	0	1	0	0	0	0	0	0	0	8919	493	17	3		3	LOC286238	9	91266948	RNA	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	18299836	91266948	49946483	146	791											
FANCC	2176	hgsc.bcm.edu;bcgsc.ca	37	chr9	97934327	97934327	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatactcacatttttaaGcaaaccaggatagtaatcta	17	13	4	7	0	2	0	1	0	1	0	2	1	2	1	1	1	3	2	1	1	8	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001243743	exon5	c.C448A	p.L150I	TTTTAAGCAAACC	.	94	4	109	0	.	.	T	97934327	G	T	97934327	3	4	6	1	0	0	0	0	1	0	0	0	5697	971	34	3	1272	3	FANCC	9	97934327	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6667379	97934327	43279104	147	792											
TMEM38B	55151	hgsc.bcm.edu	37	chr9	108456998	108456998	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccgcacgtccatgtttccCttttttgacatcgcgcacta	6	14	6	15	4	0	1	0	1	0	0	4	1	3	1	3	0	0	3	3	0	1	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TMEM38B,caecum,carcinoma,0,1	TMEM38B	NM_018112	exon1	c.C57A	p.P19P	GTTTCCCTTTTTT	.	61	3	93	0	.	0	A	108456998	C	A	108456998	2	1	6	1	0	0	0	0	0	0	0	1	16220	668	24	3		3	TMEM38B	9	108456998	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	10522671	108456998	32756433	148	793											
TRIM32	22954	hgsc.bcm.edu	37	chr9	119461766	119461766	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgcattgctggcatgtGtgtggatgctcgtggtgatc	4	13	15	9	2	0	1	0	1	0	0	2	2	0	2	1	3	3	5	1	3	0	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TRIM32,NS,carcinoma,0,1	TRIM32	NM_012210	exon2	c.G1745T	p.C582F	GCATGTGTGTGGA	.	13	2	20	0	.	0	T	119461766	G	T	119461766	3	4	6	1	0	0	0	0	1	0	0	0	16567	1377	48	3	1747	3	TRIM32	9	119461766	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	11004768	119461766	21751665	149	794											
FBXW2	26190	hgsc.bcm.edu	37	chr9	123550286	123550286	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttattccactgtttaGagacgaggcagcatgtgagt	10	12	10	9	1	1	2	1	1	0	1	2	4	2	2	2	1	1	3	2	1	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FBXW2_ENST00000373926,NS,carcinoma,0,1	FBXW2_ENST00000373926	NM_012164	exon3	c.C251A	p.S84Y	TGTTTAGAGACGA	.	32	2	37	0	.	0	T	123550286	G	T	123550286	3	4	6	1	0	0	0	0	1	0	0	0	5799	942	33	3	1137	3	FBXW2	9	123550286	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4088520	123550286	17663145	150	795											
SETX	23064	hgsc.bcm.edu	37	chr9	135202917	135202917	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtctatttttttgtgatttGggtctgatctgcctttgcat	4	21	9	7	1	3	2	0	2	3	0	3	2	3	2	1	1	2	1	1	1	1	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SETX,NS,carcinoma,0,1	SETX	NM_015046	exon10	c.C4068A	p.P1356P	TGATTTGGGTCTG	.	39	2	53	0	.	0	T	135202917	G	T	135202917	2	4	6	1	0	0	0	0	0	0	0	1	14195	1335	47	3		3	SETX	9	135202917	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	11652631	135202917	6010514	151	796											
SEC16A	9919	ucsc.edu;bcgsc.ca	37	chr9	139341749	139341749	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgacaaagtccgcaggagcGagagccggctcgctccgctg	8	4	15	14	6	0	1	0	0	0	1	3	4	2	2	3	2	2	4	3	2	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SEC16A	NM_014866	exon27	c.C6627A	p.L2209L	AGGAGCGAGAGCC	.	20	4	31	0	.	249	T	139341749	G	T	139341749	2	4	6	1	0	0	0	0	0	0	0	1	14040	1045	37	2		2	SEC16A	9	139341749	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4138832	139341749	1871682	152	797											
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139754378	139754378	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgccagctgtggttggCagtgccctcctattgctcat	4	14	11	12	0	2	0	1	0	1	0	3	0	3	0	3	2	4	4	3	2	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_206920	exon26	c.C3234A	p.G1078G	GGTTGGCAGTGCC	.	32	9	40	0	.	.	A	139754378	C	A	139754378	2	1	6	1	0	0	0	0	0	0	0	1	9254	697	25	3		3	MAMDC4	9	139754378	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	412629	139754378	1459053	153	798											
MAP3K8	1326	hgsc.bcm.edu	37	chr10	30747044	30747044	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccagaggtcatcctgtgcaGgggccattcaaccaaagcag	11	6	11	13	0	2	1	2	0	0	1	3	1	3	1	4	3	3	2	4	3	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MAP3K8,NS,carcinoma,0,1	MAP3K8	NM_001244134	exon6	c.G905T	p.R302M	TGTGCAGGGGCCA	.	45	3	44	0	.	0	T	30747044	G	T	30747044	3	4	6	1	0	0	0	0	1	0	0	0	9306	1000	35	3	923	3	MAP3K8	10	30747044	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		30747044	104787703	154	799											
CUL2	8453	hgsc.bcm.edu	37	chr10	35327979	35327979	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gatgtaggtattttcgacatCgaatttcttcatcttttaat	10	19	6	6	2	3	0	1	0	2	0	5	3	3	0	0	1	0	2	0	1	4	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CUL2,rectum,carcinoma,0,1	CUL2	NM_001198778	exon9	c.G803A	p.R268Q	CGACATCGAATTT	.	75	3	72	0	.	0	T	35327979	C	T	35327979	3	4	6	1	0	0	0	0	1	0	0	0	4078	884	31	1	1543	1	CUL2	10	35327979	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4580935	35327979	100206768	155	800											
C10orf71	118461	hgsc.bcm.edu	37	chr10	50530860	50530860	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagttaccgtcacagggcacGgaacattcgggctgggcggc	8	6	15	12	4	1	0	1	0	0	0	2	1	1	1	1	5	2	3	1	5	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C10orf71_ENST00000374144,NS,carcinoma,0,2	C10orf71_ENST00000374144	NM_001135196	exon3	c.G270T	p.T90T	GGGCACGGAACAT	.	30	2	48	0	.	0	T	50530860	G	T	50530860	2	4	6	1	0	0	0	0	0	0	0	1	1618	1103	39	2		2	C10orf71	10	50530860	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	15202881	50530860	85003887	156	801											
HKDC1	80201	hgsc.bcm.edu	37	chr10	70992818	70992818	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagatttcatgaagaccaaaGatttaaagcataagaaattg	19	10	7	5	0	1	5	1	1	0	4	1	5	1	5	1	0	1	1	1	0	6	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HKDC1,NS,carcinoma,0,1	HKDC1	NM_025130	exon4	c.G424T	p.D142Y	ACCAAAGATTTAA	.	33	3	26	0	.	0	T	70992818	G	T	70992818	3	4	6	1	0	0	0	0	1	0	0	0	7234	942	33	3	438	3	HKDC1	10	70992818	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	20461958	70992818	64541929	157	802											
UNC5B	219699	ucsc.edu;bcgsc.ca	37	chr10	73050759	73050759	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatcctcatggcggtgggggTggtggtgtaccgccgcaact	6	9	16	10	3	1	0	1	0	0	0	2	0	2	0	3	6	2	2	3	6	3	1	rs117156661	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	UNC5B	NM_170744	exon9	c.T1187G	p.V396G	TGGGGGTGGTGGT	.	39	12	41	1	T|0.999;G|0.001	123	G	73050759	T	G	73050759	3	3	6	1	0	0	0	0	1	0	0	0	17052	1696	59	4	1221	4	UNC5B	10	73050759	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	2057941	73050759	62483988	158	803											
CAMK2G	818	hgsc.bcm.edu	37	chr10	75574960	75574960	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccccaatcacgtggacgtgtGggtttaggatggtggtatgg	7	11	16	7	2	1	0	1	0	0	0	1	2	1	2	2	6	0	2	2	6	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172171	exon20	c.C1484A	p.P495Q	ACGTGTGGGTTTA	.	46	3	30	0	.	.	T	75574960	G	T	75574960	3	4	6	1	0	0	0	0	1	0	0	0	2620	1348	47	3	190	3	CAMK2G	10	75574960	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2524201	75574960	59959787	159	804											
VCL	7414	hgsc.bcm.edu	37	chr10	75860838	75860838	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggcctcagtgaagacggccCgagaactcacaccccaggtt	11	5	11	14	2	2	3	2	1	0	2	2	4	2	3	4	3	1	1	4	3	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	VCL,NS,carcinoma,0,1	VCL	NM_003373	exon14	c.C2005A	p.R669R	ACGGCCCGAGAAC	.	49	2	45	0	.	0	A	75860838	C	A	75860838	2	1	6	1	0	0	0	0	0	0	0	1	17199	644	23	2		2	VCL	10	75860838	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	285878	75860838	59673909	160	805											
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	97197306	97197306	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacagctttggaaccaccaTcacattctgcaagaaagaaa	16	8	6	11	0	3	2	2	0	1	2	3	3	3	3	2	1	3	2	2	1	4	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001034955	exon2	c.A17T	p.D6V	CCACCATCACATT	.	32	4	40	0	.	.	A	97197306	T	A	97197306	3	1	6	1	0	0	0	0	1	0	0	0	14981	1435	50	5	4178	5	SORBS1	10	97197306	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	21336468	97197306	38337441	161	806											
GOT1	2805	hgsc.bcm.edu	37	chr10	101163490	101163490	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agagcactcactgtagagccCgaagttcttggagaaggact	12	8	12	9	1	2	3	1	0	1	3	2	6	2	4	1	2	2	3	1	2	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GOT1,NS,carcinoma,0,1	GOT1	NM_002079	exon6	c.G784T	p.G262W	AGAGCCCGAAGTT	.	34	2	45	0	.	0	A	101163490	C	A	101163490	3	1	6	1	0	0	0	0	1	0	0	0	6618	652	23	2	473	2	GOT1	10	101163490	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3966184	101163490	34371257	162	807											
COX15	1355	ucsc.edu;bcgsc.ca	37	chr10	101489417	101489417	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gagggaagggacactgtaccCcttccagattgcaaagctac	12	7	11	11	0	0	1	0	0	0	1	1	4	1	3	3	2	4	3	3	2	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COX15	NM_078470	exon2	c.G165T	p.R55S	TGTACCCCTTCCA	.	26	4	32	0	.	25	A	101489417	C	A	101489417	3	1	6	1	0	0	0	0	1	0	0	0	3787	622	22	3	1169	3	COX15	10	101489417	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	325927	101489417	34045330	163	808											
BTRC	8945	hgsc.bcm.edu	37	chr10	103294590	103294590	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctccggagggtgctggtcGgacaccgagctgctgtcaat	6	8	14	13	3	1	0	1	0	0	0	3	3	2	2	3	4	3	3	3	4	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_033637	exon10	c.G1270T	p.G424X	CTGGTCGGACACC	.	58	4	54	0	.	.	T	103294590	G	T	103294590	4	4	6	1	0	0	0	0	0	1	0	0	1572	1117	39	2	1308	2	BTRC	10	103294590	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1805173	103294590	32240157	164	809											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104117876	104117876	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cctcggcccccacgccatatGaccaaagtcacaccaggttc	10	6	7	18	2	1	1	1	1	0	0	3	1	1	1	6	2	0	1	6	2	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001199378	exon9	c.G720A	p.M240I	CCATATGACCAAA	.	36	5	38	0	.	.	A	104117876	G	A	104117876	3	1	6	1	0	0	0	0	1	0	0	0	6311	1290	45	3	750	3	GBF1	10	104117876	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	823286	104117876	31416871	165	810											
COL17A1	1308	hgsc.bcm.edu	37	chr10	105819419	105819419	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagcttcggcttttaggcctGagtcagcattgtaggcagct	7	13	12	9	1	1	1	1	1	0	0	2	1	1	1	1	3	3	6	1	3	3	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000494	exon15	c.C1199A	p.S400X	AGGCCTGAGTCAG	.	54	4	75	0	.	.	T	105819419	G	T	105819419	4	4	6	1	0	0	0	0	0	1	0	0	3697	1294	45	3	3462	3	COL17A1	10	105819419	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1701543	105819419	29715328	166	811											
HSPA12A	259217	hgsc.bcm.edu	37	chr10	118460575	118460575	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agctgtggaacttcctctcgGgagtcagcaagatggtggtt	8	11	14	8	1	2	1	1	0	1	1	4	3	3	3	1	4	3	3	1	4	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HSPA12A,colon,carcinoma,0,1	HSPA12A	NM_025015	exon4	c.C320A	p.P107H	CTCTCGGGAGTCA	.	35	2	37	0	.	0	T	118460575	G	T	118460575	3	4	6	1	0	0	0	0	1	0	0	0	7447	1232	43	3	1743	3	HSPA12A	10	118460575	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	12641156	118460575	17074172	167	812											
EIF3A	8661	hgsc.bcm.edu;bcgsc.ca	37	chr10	120820340	120820340	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gttccttttcaggttgttccCtaacccaatttagaacctat	9	16	5	11	0	1	1	1	0	0	1	3	1	3	1	4	1	2	3	4	1	5	9	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003750	exon9	c.G1244T	p.R415M	TGTTCCCTAACCC	.	74	4	56	0	.	.	A	120820340	C	A	120820340	3	1	6	1	0	0	0	0	1	0	0	0	5038	681	24	3	2960	3	EIF3A	10	120820340	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2359765	120820340	14714407	168	813											
FAM45A	404636	hgsc.bcm.edu	37	chr10	120867507	120867507	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatggagaagttctgtGggtgtggtgttatccttcca	9	13	12	7	0	1	1	0	0	1	1	3	2	3	1	2	3	0	2	2	3	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_207009	exon2	c.G83T	p.W28L	TTCTGTGGGTGTG	.	89	5	89	0	.	.	T	120867507	G	T	120867507	3	4	6	1	0	0	0	0	1	0	0	0	5600	1357	47	3	89	3	FAM45A	10	120867507	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	47167	120867507	14667240	169	814											
C10orf137	26098	hgsc.bcm.edu	37	chr10	127429150	127429150	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctattatgttttgtcCgatgctgccatgagtcttca	8	15	9	9	1	2	1	1	1	1	0	3	2	3	1	3	1	2	2	3	1	3	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C10orf137,caecum,carcinoma,0,1	C10orf137	NM_001202438	exon16	c.C2100A	p.S700S	TTTGTCCGATGCT	.	44	2	84	0	.	0	A	127429150	C	A	127429150	2	1	6	1	0	0	0	0	0	0	0	1	1598	639	23	2		2	C10orf137	10	127429150	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	6561643	127429150	8105597	170	815											
HTATIP2	10553	hgsc.bcm.edu	37	chr11	20385802	20385802	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcatggccgaaacagaagccCtgtcgaagcttcgggaagac	12	5	13	11	3	0	2	0	0	0	2	2	5	0	3	2	2	3	2	2	2	4	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HTATIP2_ENST00000419348,NS,carcinoma,0,2	HTATIP2_ENST00000419348	NM_001098520	exon2	c.C121A	p.L41M	GAAGCCCTGTCGA	.	44	2	51	0	.	0	A	20385802	C	A	20385802	3	1	6	1	0	0	0	0	1	0	0	0	7476	680	24	3	127	3	HTATIP2	11	20385802	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		20385802	114620714	171	816											
PAX6	5080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	31823198	31823198	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggacgggcactcccgcttatActgggctattttgcttacaa	8	12	10	11	2	0	0	0	0	0	0	1	1	1	1	1	3	3	4	1	3	5	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001604	exon7	c.T310C	p.Y104H	GCTTATACTGGGC	.	58	14	40	0	.	.	G	31823198	A	G	31823198	3	3	6	1	0	0	0	0	1	0	0	0	11530	391	14	4	1032	4	PAX6	11	31823198	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	11437396	31823198	103183318	172	817											
CAPRIN1	4076	bcgsc.ca	37	chr11	34074142	34074142	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggccatgaagcagattctcGgggtgatcgacaagaaactt	13	8	12	8	2	1	4	0	2	1	2	3	5	1	4	1	3	2	1	1	3	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CAPRIN1	NM_203364	exon2	c.G175T	p.G59W	ATTCTCGGGGTGA	.	56	4	51	0	.	110	T	34074142	T	T	34074142	3	4	6	1	0	0	0	0	1	0	0	0	2653	1116	39	2	177	2	CAPRIN1	11	34074142	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2250944	34074142	100932374	173	818											
PTPRJ	5795	hgsc.bcm.edu;bcgsc.ca	37	chr11	48168501	48168501	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgtgggaggcttcatcttCtggagaaagaagaggtgata	12	10	14	5	0	3	4	1	1	2	3	3	6	3	5	0	4	0	1	0	4	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002843	exon15	c.C2985A	p.F995L	CATCTTCTGGAGA	.	77	4	67	0	.	.	A	48168501	C	A	48168501	3	1	6	1	0	0	0	0	1	0	0	0	12856	912	32	3	3052	3	PTPRJ	11	48168501	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	14094359	48168501	86838015	174	819											
OR5I1	10798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	55703319	55703319	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgcaggatagtttaagCaggggagggaggtcacagaa	13	7	16	5	0	2	1	2	0	0	1	2	4	2	4	0	5	2	3	0	5	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006637	exon1	c.G558A	p.L186L	TTTAAGCAGGGGA	.	55	7	66	0	.	.	T	55703319	C	T	55703319	2	4	6	1	0	0	0	0	0	0	0	1	11211	697	25	3		3	OR5I1	11	55703319	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	7534818	55703319	79303197	175	820											
MS4A7	58475	hgsc.bcm.edu;bcgsc.ca	37	chr11	60152623	60152623	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccatcttggtttttgctccCtacccctcccacttcaatcc	5	14	4	18	0	2	0	1	0	1	0	5	0	5	0	6	1	2	2	6	1	2	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_021201	exon3	c.C210A	p.P70P	TGCTCCCTACCCC	.	56	4	80	0	.	.	A	60152623	C	A	60152623	2	1	6	1	0	0	0	0	0	0	0	1	9915	668	24	3		3	MS4A7	11	60152623	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4449304	60152623	74853893	176	821											
DAK	26007	ucsc.edu;bcgsc.ca	37	chr11	61109333	61109333	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatcctcctgcagcgtccctGgttccaaacccaccttcgag	7	10	7	17	2	0	0	0	0	0	0	5	1	4	0	6	1	3	2	6	1	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DAK	NM_015533	exon7	c.G604T	p.G202C	GTCCCTGGTTCCA	.	33	4	35	0	.	52	T	61109333	G	T	61109333	3	4	6	1	0	0	0	0	1	0	0	0	4252	1348	47	3	626	3	DAK	11	61109333	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	956710	61109333	73897183	177	822											
SCGB1D2	10647	hgsc.bcm.edu	37	chr11	62010926	62010926	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagatgtcccttcagaaacGaagcctcattgcggaagtcc	11	9	9	12	2	3	2	3	0	0	2	5	4	5	3	3	1	3	0	3	1	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SCGB1D2,NS,malignant_melanoma,0,1	SCGB1D2	NM_006551	exon2	c.G221T	p.R74L	AGAAACGAAGCCT	.	38	2	57	0	.	0	T	62010926	G	T	62010926	3	4	6	1	0	0	0	0	1	0	0	0	13950	1058	37	2	227	2	SCGB1D2	11	62010926	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	901593	62010926	72995590	178	823											
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	chr11	62287880	62287880	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcaggttcacatccacatctGggccctctcctttgaagcca	8	10	8	15	0	3	1	1	1	2	0	5	1	4	1	4	2	1	2	4	2	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001620	exon5	c.C14009A	p.P4670Q	ACATCTGGGCCCT	.	83	4	75	0	.	.	T	62287880	G	T	62287880	3	4	6	1	0	0	0	0	1	0	0	0	411	1348	47	3	3783	3	AHNAK	11	62287880	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	276954	62287880	72718636	179	824											
SLC22A10	387775	hgsc.bcm.edu	37	chr11	63066993	63066993	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttattattgaaggttgtaaGatccaccatgcaggaggagc	12	12	11	6	0	0	2	0	1	0	1	1	4	1	4	2	3	2	3	2	3	4	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLC22A10,bladder,carcinoma,0,1	SLC22A10	NM_001039752	exon6	c.G962T	p.R321I	TTGTAAGATCCAC	.	45	2	49	0	.	0	T	63066993	G	T	63066993	3	4	6	1	0	0	0	0	1	0	0	0	14496	942	33	3	984	3	SLC22A10	11	63066993	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	779113	63066993	71939523	180	825											
RASGRP2	10235	hgsc.bcm.edu;bcgsc.ca	37	chr11	64509528	64509528	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agaggaggggatgtaccaggGgtgcatcatgaggaacatgc	12	6	17	6	0	1	2	1	1	0	1	1	5	1	5	1	6	4	2	1	6	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001098671	exon3	c.C130A	p.P44T	ACCAGGGGTGCAT	.	47	4	44	0	.	.	T	64509528	G	T	64509528	3	4	6	1	0	0	0	0	1	0	0	0	13127	1232	43	3	1755	3	RASGRP2	11	64509528	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1442535	64509528	70496988	181	826											
FOSL1	8061	hgsc.bcm.edu	37	chr11	65664318	65664318	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	acgtacccctggaggcggccCcagggcccggatgactcctg	6	5	14	16	3	0	1	0	1	0	0	1	3	1	3	6	5	1	1	6	5	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FOSL1,NS,neuroblastoma,0,1	FOSL1	NM_005438	exon2	c.G259T	p.G87W	GCGGCCCCAGGGC	.	41	2	55	0	.	0	A	65664318	C	A	65664318	3	1	6	1	0	0	0	0	1	0	0	0	6020	623	22	3	568	3	FOSL1	11	65664318	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1154790	65664318	69342198	182	827											
PC	5091	ucsc.edu;bcgsc.ca	37	chr11	66639209	66639209	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtaggcctgcacgggggcCaggccgcggccgatgagata	8	4	18	11	4	0	1	0	1	0	1	0	3	0	1	4	6	1	2	4	6	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PC	NM_000920	exon4	c.G270T	p.L90L	GGGGGCCAGGCCG	.	33	4	24	0	.	116	A	66639209	C	A	66639209	2	1	6	1	0	0	0	0	0	0	0	1	11544	581	21	3		3	PC	11	66639209	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	974891	66639209	68367307	183	828											
MMP8	4317	hgsc.bcm.edu;bcgsc.ca	37	chr11	102592253	102592253	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatggagaattgtcaccGtgatctgaaataagaacatt	16	11	8	6	1	3	4	2	2	1	2	3	5	3	4	1	1	1	0	1	1	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002424	exon4	c.C501T	p.H167H	GTCACCGTGATCT	.	77	4	107	0	.	.	A	102592253	G	A	102592253	2	1	6	1	0	0	0	0	0	0	0	1	9717	1136	40	1		1	MMP8	11	102592253	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	35953044	102592253	32414263	184	829											
CASP1	834	hgsc.bcm.edu	37	chr11	104899882	104899882	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagcagaaagcgataaaatcCttctctatgtgggctttctt	11	13	9	8	1	2	1	0	0	2	1	4	3	3	1	1	1	2	2	1	1	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001257118	exon7	c.G975T	p.K325N	AAAATCCTTCTCT	.	59	3	70	0	.	.	A	104899882	C	A	104899882	3	1	6	1	0	0	0	0	1	0	0	0	2686	680	24	3	251	3	CASP1	11	104899882	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2307629	104899882	30106634	185	830											
ZNF259	8882	hgsc.bcm.edu;bcgsc.ca	37	chr11	116657702	116657702	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tacctcctttctggctaaagGcaggaatttcaaaatctagc	12	12	7	10	0	3	0	1	0	2	0	4	1	4	1	2	3	2	2	2	3	7	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003904	exon3	c.C407T	p.A136V	CTAAAGGCAGGAA	.	63	4	81	0	.	.	A	116657702	G	A	116657702	3	1	6	1	0	0	0	0	1	0	0	0	17859	1203	42	3	1020	3	ZNF259	11	116657702	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	11757820	116657702	18348814	186	831											
IL10RA	3587	broad.mit.edu	37	chr11	117869604	117869604	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaccaagccatccctgCagactgaagagccccagttc	11	5	9	16	0	0	3	0	1	0	2	2	3	1	3	5	0	4	4	5	0	2	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	IL10RA	NM_001558	exon7	c.C985A	p.Q329K	TCCCTGCAGACTG	.	32	3	32	0	.	46	A	117869604	C	A	117869604	3	1	6	1	0	0	0	0	1	0	0	0	7664	711	25	3	1011	3	IL10RA	11	117869604	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1211902	117869604	17136912	187	832											
UBE4A	9354	hgsc.bcm.edu;ucsc.edu	37	chr11	118263498	118263498	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaggaaacctatgcagatGcctgtgatgagttcctggat	12	10	12	7	0	0	4	0	2	0	2	1	6	1	6	3	2	3	2	3	2	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004788	exon19	c.G2983T	p.A995S	GCAGATGCCTGTG	.	34	4	16	0	.	.	T	118263498	G	T	118263498	3	4	6	1	0	0	0	0	1	0	0	0	16943	1319	46	3	3053	3	UBE4A	11	118263498	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	393894	118263498	16743018	188	833											
STT3A	3703	hgsc.bcm.edu	37	chr11	125484040	125484040	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gattacagctatggcaaaccGaacaattttagtggacaata	16	10	8	7	1	0	0	0	0	0	0	0	3	0	1	1	2	4	2	1	2	8	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	STT3A,colon,carcinoma,0,1	STT3A	NM_152713	exon14	c.G1613T	p.R538L	CAAACCGAACAAT	.	68	3	53	0	.	0	T	125484040	G	T	125484040	3	4	6	1	0	0	0	0	1	0	0	0	15389	1058	37	2	1663	2	STT3A	11	125484040	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	7220542	125484040	9522476	189	834											
CACNA1C	775	hgsc.bcm.edu;bcgsc.ca	37	chr12	2721141	2721141	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttcactggcctcttcaccGtggagatgatcctgaagctc	7	12	9	13	1	4	3	2	2	2	1	6	4	5	3	3	2	1	1	3	2	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_199460	exon30	c.G3850T	p.V1284L	TTCACCGTGGAGA	.	45	4	39	0	.	.	T	2721141	G	T	2721141	3	4	6	1	0	0	0	0	1	0	0	0	2558	1145	40	2	4076	2	CACNA1C	12	2721141	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		2721141	131130754	190	835											
PLBD1	79887	hgsc.bcm.edu	37	chr12	14664306	14664306	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agctttactttcttcaggtcCagaaccatgtattgattgtt	9	17	7	8	0	2	2	1	1	1	1	3	2	3	2	2	1	3	3	2	1	3	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_024829	exon8	c.G1074T	p.L358L	CAGGTCCAGAACC	.	90	3	85	0	.	.	A	14664306	C	A	14664306	2	1	6	1	0	0	0	0	0	0	0	1	12073	581	21	3		3	PLBD1	12	14664306	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11943165	14664306	119187589	191	836											
PDE3A	5139	hgsc.bcm.edu;bcgsc.ca	37	chr12	20801776	20801776	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tgtcattgaagcaattttggCcactgacctgaagaaacact	13	11	8	9	0	1	4	1	3	0	1	1	4	1	4	2	1	2	1	2	1	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000921	exon13	c.C2720T	p.A907V	TTTTGGCCACTGA	.	86	4	88	0	.	.	T	20801776	C	T	20801776	3	4	6	1	0	0	0	0	1	0	0	0	11684	739	26	3	2770	3	PDE3A	12	20801776	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	6137470	20801776	113050119	192	837											
MLL2	9757	bcgsc.ca	37	chr12	49421075	49421075	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacattgtaggtatagctgtGctgagtgggtggctctgggg	6	12	18	5	0	1	1	0	1	1	0	1	2	1	1	0	5	2	5	0	5	3	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	MLL2	NM_003482	exon48	c.C14674T	p.H4892Y	AGCTGTGCTGAGT	.	50	4	47	0	.	1173	A	49421075	A	A	49421075	3	1	6	1	0	0	0	0	1	0	0	0	9669	1319	46	3	1967	3	MLL2	12	49421075	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	28619299	49421075	84430820	193	838											
FAIM2	23017	hgsc.bcm.edu	37	chr12	50294991	50294991	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggcccctgccttcatcccctCcccagaggtggcttcctcat	4	10	8	19	0	2	1	2	0	0	1	5	1	5	1	8	3	1	1	8	3	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FAIM2,NS,carcinoma,0,1	FAIM2	NM_012306	exon2	c.G133T	p.E45X	TCCCCTCCCCAGA	.	49	2	47	0	.	0	A	50294991	C	A	50294991	4	1	6	1	0	0	0	0	0	1	0	0	5407	864	30	3	861	3	FAIM2	12	50294991	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	873916	50294991	83556904	194	839											
RACGAP1	29127	hgsc.bcm.edu;bcgsc.ca	37	chr12	50395035	50395035	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaactgtcggctagtagagcGctagaaaggagacaaagacc	16	5	12	8	2	0	4	0	0	0	4	1	5	0	4	1	2	2	3	1	2	6	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	RACGAP1,NS,carcinoma,0,1	RACGAP1	NM_013277	exon9	c.C550A	p.R184S	TAGAGCGCTAGAA	.	51	4	44	0	.	0	T	50395035	G	T	50395035	3	4	6	1	0	0	0	0	1	0	0	0	13029	1101	38	2	1392	2	RACGAP1	12	50395035	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	100044	50395035	83456860	195	840											
TFCP2	7024	hgsc.bcm.edu	37	chr12	51503017	51503017	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tggcacccccttttctccacCatgtttcctcatagtgaact	7	14	5	15	0	2	1	1	1	1	0	4	1	3	1	5	1	1	2	5	1	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001173452	exon6	c.G604T	p.G202C	CTCCACCATGTTT	.	74	3	57	0	.	.	A	51503017	C	A	51503017	3	1	6	1	0	0	0	0	1	0	0	0	15855	594	21	3	944	3	TFCP2	12	51503017	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1107982	51503017	82348878	196	841											
ITGB7	3695	hgsc.bcm.edu	37	chr12	53588035	53588035	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tcgatcctcagccttaccctCcctcttctcaggaccctcac	6	11	4	20	1	4	0	3	0	2	0	8	2	6	1	5	1	2	0	5	1	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ITGB7,NS,NS,0,1	ITGB7	NM_000889	exon10	c.G1255T	p.E419X	TACCCTCCCTCTT	.	42	2	33	0	.	0	A	53588035	C	A	53588035	4	1	6	1	0	0	0	0	0	1	0	0	7944	864	30	3	1169	3	ITGB7	12	53588035	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2085018	53588035	80263860	197	842											
CNOT2	4848	hgsc.bcm.edu	37	chr12	70735907	70735907	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaatctctaccccaaatttgCgtcaccctgggcatcttcac	10	11	5	15	1	4	0	2	0	2	0	5	0	4	0	3	1	2	1	3	1	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CNOT2,NS,carcinoma,0,1	CNOT2	NM_001199302	exon13	c.C1199T	p.A400V	AATTTGCGTCACC	.	49	3	40	0	.	0	T	70735907	C	T	70735907	3	4	6	1	0	0	0	0	1	0	0	0	3642	768	27	1	1241	1	CNOT2	12	70735907	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	17147872	70735907	63115988	198	843											
NAP1L1	4673	hgsc.bcm.edu	37	chr12	76447054	76447054	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agtcacagtacgaactgtccCacgtcccttgtgtttctgct	7	13	8	13	2	2	0	1	0	1	0	4	1	4	0	2	0	3	3	2	0	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004537	exon10	c.G847T	p.G283W	CTGTCCCACGTCC	.	89	4	88	0	.	.	A	76447054	C	A	76447054	3	1	6	1	0	0	0	0	1	0	0	0	10204	594	21	3	352	3	NAP1L1	12	76447054	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5711147	76447054	57404841	199	844											
MYF5	4617	hgsc.bcm.edu	37	chr12	81110964	81110964	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtggctgccttcggagCgcacaaagcagagctgcagg	9	5	16	11	3	0	1	0	0	0	1	1	3	0	2	1	3	5	5	1	3	1	1	rs375022310	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MYF5,colon,carcinoma,0,1	MYF5	NM_005593	exon1	c.C122T	p.A41V	TCGGAGCGCACAA	.	21	2	26	0	.	0	T	81110964	C	T	81110964	3	4	6	1	0	0	0	0	1	0	0	0	10075	768	27	1	124	1	MYF5	12	81110964	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4663910	81110964	52740931	200	845											
ACSS3	79611	hgsc.bcm.edu	37	chr12	81536974	81536974	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtgttcctgttctttCagaacacccactgtatattc	8	16	6	11	0	2	2	1	1	1	1	4	2	3	2	2	0	1	3	2	0	3	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ACSS3,bladder,carcinoma,0,1	ACSS3	NM_024560	exon5	c.C869A	p.S290X	TTCTTTCAGAACA	.	50	3	58	0	.	0	A	81536974	C	A	81536974	4	1	6	1	0	0	0	0	0	1	0	0	190	838	29	3	887	3	ACSS3	12	81536974	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	426010	81536974	52314921	201	846											
STAB2	55576	hgsc.bcm.edu	37	chr12	104100719	104100719	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagggcttcagcggcacagcCtgcgagacctgcaccgaggg	8	4	16	13	3	1	1	1	0	0	1	1	4	1	1	3	3	4	3	3	3	0	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	STAB2,right_upper_lobe,carcinoma,0,1	STAB2	NM_017564	exon38	c.C4146A	p.A1382A	CACAGCCTGCGAG	.	14	2	25	0	.	0	A	104100719	C	A	104100719	2	1	6	1	0	0	0	0	0	0	0	1	15294	668	24	3		3	STAB2	12	104100719	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	22563745	104100719	29751176	202	847											
NFYB	4801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	104517018	104517018	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttacctctctgaatttctGaaggtataatttcagaggtt	11	17	7	6	0	3	3	1	2	2	1	4	3	3	3	1	2	1	2	1	2	5	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006166	exon5	c.C415A	p.Q139K	ATTTCTGAAGGTA	.	29	4	38	0	.	.	T	104517018	G	T	104517018	3	4	6	1	0	0	0	0	1	0	0	0	10437	1299	45	3	224	3	NFYB	12	104517018	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	416299	104517018	29334877	203	848											
PWP1	11137	hgsc.bcm.edu	37	chr12	108097519	108097519	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctctgatttctggctcatatGataagtaagaaagcacagca	14	11	8	8	0	3	3	1	2	2	1	3	3	3	3	0	1	2	4	0	1	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PWP1,colon,carcinoma,0,1	PWP1	NM_007062	exon10	c.G961A	p.D321N	TCATATGATAAGT	.	28	2	41	0	.	0	A	108097519	G	A	108097519	3	1	6	1	0	0	0	0	1	0	0	0	12895	1290	45	3	999	3	PWP1	12	108097519	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	3580501	108097519	25754376	204	849											
SSH1	54434	hgsc.bcm.edu	37	chr12	109182282	109182282	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctgacttctcatcactccCggcctggctgggcataacca	7	10	8	16	1	3	1	2	1	2	0	5	1	4	1	3	3	1	2	3	3	1	2	rs367620838	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SSH1,NS,carcinoma,0,1	SSH1	NM_018984	exon15	c.G2632T	p.G878W	CACTCCCGGCCTG	.	39	2	42	0	.	0	A	109182282	C	A	109182282	3	1	6	1	0	0	0	0	1	0	0	0	15240	652	23	2	521	2	SSH1	12	109182282	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1084763	109182282	24669613	205	850											
CIT	11113	bcgsc.ca	37	chr12	120135559	120135559	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttaatttatcctggtatgaGgacgccaagtaaatcgctcc	11	12	8	10	2	0	1	0	1	0	0	3	2	2	2	3	2	0	3	3	2	6	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CIT	NM_001206999	exon46	c.C5787A	p.S1929S	GTATGAGGACGCC	.	29	4	43	0	.	535	T	120135559	T	T	120135559	2	4	6	1	0	0	0	0	0	0	0	1	3461	987	35	3		3	CIT	12	120135559	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	10953277	120135559	13716336	206	851											
GPR133	283383	hgsc.bcm.edu;bcgsc.ca	37	chr12	131476787	131476787	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaatttctttcagatgccCacagatgcctaccatcccat	10	11	5	15	0	2	2	1	0	1	2	3	2	3	2	5	0	3	0	5	0	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_198827	exon8	c.C816A	p.P272P	GATGCCCACAGAT	.	85	4	58	0	.	.	A	131476787	C	A	131476787	2	1	6	1	0	0	0	0	0	0	0	1	6683	581	21	3		3	GPR133	12	131476787	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11341228	131476787	2375108	207	852											
MTUS2	23281	hgsc.bcm.edu	37	chr13	29933476	29933476	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggcccgtgaggctgagCggcagctggtgctgcggctg	4	6	19	12	4	0	2	0	2	0	0	0	2	0	2	1	5	4	6	1	5	0	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MTUS2_ENST00000431530,colon,carcinoma,0,1	MTUS2_ENST00000431530	NM_001033602	exon6	c.C3013T	p.R1005W	GCTGAGCGGCAGC	.	32	2	43	0	.	0	T	29933476	C	T	29933476	3	4	6	1	0	0	0	0	1	0	0	0	10014	759	27	1	3035	1	MTUS2	13	29933476	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		29933476	85236402	208	853											
ARHGEF7	8874	hgsc.bcm.edu	37	chr13	111953840	111953840	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggagtcttgtggatacCgtatatgcattaaaggatga	12	13	11	5	1	2	1	1	1	1	0	2	4	2	4	1	3	2	2	1	3	5	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ARHGEF7_ENST00000375736,NS,carcinoma,0,1	ARHGEF7_ENST00000375736	NM_003899	exon19	c.C1779A	p.T593T	GGATACCGTATAT	.	74	3	120	0	.	0	A	111953840	C	A	111953840	2	1	6	1	0	0	0	0	0	0	0	1	908	639	23	2		2	ARHGEF7	13	111953840	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	82020364	111953840	3216038	209	854											
ATP11A	23250	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr13	113512205	113512205	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgatggtgcaaatgatgtcaGcatgattctggaagcgcacg	11	9	13	8	3	2	2	1	2	1	0	2	4	2	3	0	2	3	3	0	2	2	1	rs371031585	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_032189	exon21	c.G2492A	p.S831N	ATGTCAGCATGAT	.	29	4	27	0	.	.	A	113512205	G	A	113512205	3	1	6	1	0	0	0	0	1	0	0	0	1118	971	34	3	2574	3	ATP11A	13	113512205	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1558365	113512205	1657673	210	855											
EAPP	55837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35005377	35005377	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttccatctccttttcaaatTcatcttcactagatgattca	10	17	2	12	0	6	2	4	1	2	1	8	2	7	2	2	0	0	0	2	0	2	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018453	exon2	c.A179C	p.E60A	TCAAATTCATCTT	.	44	10	42	0	.	.	G	35005377	T	G	35005377	3	3	6	1	0	0	0	0	1	0	0	0	4903	1783	62	4	698	4	EAPP	14	35005377	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09		35005377	72344163	211	856											
PNN	5411	hgsc.bcm.edu	37	chr14	39645733	39645733	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacattttaaatttcaggcGtggattctcagatagtggag	12	13	11	5	1	2	1	2	0	1	1	3	4	2	3	0	3	1	0	0	3	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002687	exon3	c.G188A	p.R63H	TCAGGCGTGGATT	.	78	3	84	0	.	.	A	39645733	G	A	39645733	3	1	6	1	0	0	0	0	1	0	0	0	12208	1145	40	1	198	1	PNN	14	39645733	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4640356	39645733	67703807	212	857											
POLE2	5427	bcgsc.ca	37	chr14	50120901	50120901	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gatggaaccaaatccaggatCctctggaccaggtacaaaca	15	6	9	11	0	1	0	0	0	1	0	3	4	3	3	4	4	3	1	4	4	4	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	POLE2	NM_001197331	exon14	c.G1105T	p.D369Y	CAGGATCCTCTGG	.	76	4	108	0	.	36	A	50120901	A	A	50120901	3	1	6	1	0	0	0	0	1	0	0	0	12245	855	30	3	502	3	POLE2	14	50120901	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	10475168	50120901	57228639	213	858											
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggtgcagcgacaaggagcTgccgccgccgccgctctcac	6	4	14	17	6	1	0	1	0	1	0	2	2	1	1	4	2	4	3	4	2	1	0	rs200797826	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	10	2	11	0	.	202	C	53619480	T	C	53619480	3	2	6	1	0	0	0	0	1	0	0	0	4349	1580	55	4	2442	4	DDHD1	14	53619480	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	3498579	53619480	53730060	214	859											
TRMT5	57570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61446086	61446086	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cttctgacttaaagtgttcaTatgttagttccaaattgtat	11	18	6	6	0	2	1	1	1	1	0	3	1	3	1	1	0	0	4	1	0	6	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_020810	exon2	c.A530G	p.Y177C	TGTTCATATGTTA	.	43	7	84	0	.	.	C	61446086	T	C	61446086	3	2	6	1	0	0	0	0	1	0	0	0	16628	1406	49	4	1015	4	TRMT5	14	61446086	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	7826606	61446086	45903454	215	860											
SEL1L	6400	hgsc.bcm.edu;bcgsc.ca	37	chr14	81946075	81946075	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtcataaaaacgtttcgcaaGgtgaatatcctataatacag	16	11	7	7	2	1	1	1	1	0	0	3	1	2	1	1	1	2	2	1	1	9	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005065	exon20	c.C2056A	p.L686I	TCGCAAGGTGAAT	.	55	5	71	0	.	.	T	81946075	G	T	81946075	3	4	6	1	0	0	0	0	1	0	0	0	14064	1000	35	3	336	3	SEL1L	14	81946075	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	20499989	81946075	25403465	216	861											
HERC2	8924	bcgsc.ca	37	chr15	28375649	28375649	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaacagaatcttgcgtacCaggtataaacagctccagat	16	8	7	10	1	1	2	0	0	1	2	2	2	2	2	2	1	5	3	2	1	6	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	HERC2	NM_004667	exon82	c.G12662T	p.W4221L	GCGTACCAGGTAT	.	44	4	36	0	.	501	A	28375649	A	A	28375649	3	1	6	1	0	0	0	0	1	0	0	0	7099	608	21	3	1890	3	HERC2	15	28375649	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		28375649	74155743	217	862											
HERC2	8924	hgsc.bcm.edu;bcgsc.ca	37	chr15	28492030	28492030	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaaggaaccaacaccCattagctctggaccttgaag	13	8	8	12	0	2	1	1	1	1	0	2	3	2	3	3	2	4	2	3	2	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004667	exon22	c.G3249T	p.M1083I	AACACCCATTAGC	.	100	4	83	0	.	.	A	28492030	C	A	28492030	3	1	6	1	0	0	0	0	1	0	0	0	7099	594	21	3	11543	3	HERC2	15	28492030	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	116381	28492030	74039362	218	863											
GREM1	26585	hgsc.bcm.edu;broad.mit.edu	37	chr15	33023106	33023106	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactgccatgcccggggaggAggtgctggagtccagccaag	8	5	16	12	1	0	0	0	0	0	0	1	3	1	3	4	5	4	1	4	5	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_013372	exon2	c.A215G	p.E72G	GGGAGGAGGTGCT	.	11	5	9	0	.	.	G	33023106	A	G	33023106	3	3	6	1	0	0	0	0	1	0	0	0	6802	304	11	4	217	4	GREM1	15	33023106	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	4531076	33023106	69508286	219	864											
IVD	3712	hgsc.bcm.edu;bcgsc.ca	37	chr15	40702955	40702955	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatcaaccagcttgtaCgcaatgggaatgaggcccag	11	8	11	11	1	2	1	1	1	1	0	2	2	2	2	2	2	4	4	2	2	4	2	rs376324882	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002225	exon4	c.C424T	p.R142C	CTTGTACGCAATG	.	56	4	46	0	.	.	T	40702955	C	T	40702955	3	4	6	1	0	0	0	0	1	0	0	0	7972	536	19	1	438	1	IVD	15	40702955	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	7679849	40702955	61828437	220	865											
MGA	23269	hgsc.bcm.edu	37	chr15	42028642	42028642	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accctcctgtttattcttctCgtgtgaaaatctctatgcca	8	16	5	12	1	3	1	0	1	3	0	6	1	4	1	3	0	1	1	3	0	4	5	rs367727094	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MGA,NS,carcinoma,0,1	MGA	NM_001080541	exon13	c.C4180A	p.R1394S	TCTTCTCGTGTGA	.	43	3	47	0	.	0	A	42028642	C	A	42028642	3	1	6	1	0	0	0	0	1	0	0	0	9590	884	31	2	4226	2	MGA	15	42028642	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1325687	42028642	60502750	221	866											
EIF3J	8669	hgsc.bcm.edu	37	chr15	44849831	44849831	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttttggaagtcttagttcGagatgtgtgtatttcatgta	8	20	10	3	1	2	1	1	0	1	1	3	3	2	2	0	1	0	3	0	1	4	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003758	exon6	c.G554T	p.R185L	TAGTTCGAGATGT	.	77	3	49	0	.	.	T	44849831	G	T	44849831	3	4	6	1	0	0	0	0	1	0	0	0	5048	1058	37	2	576	2	EIF3J	15	44849831	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	2821189	44849831	57681561	222	867											
DUOX2	50506	hgsc.bcm.edu	37	chr15	45394116	45394116	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctggaatcccgactccCggaacatagactccaccacc	10	7	7	17	2	0	1	0	0	0	1	4	4	4	3	6	2	1	0	6	2	3	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DUOX2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	DUOX2	NM_014080	exon21	c.G2726T	p.R909L	GACTCCCGGAACA	.	42	2	51	0	.	0	A	45394116	C	A	45394116	3	1	6	1	0	0	0	0	1	0	0	0	4827	652	23	2	1976	2	DUOX2	15	45394116	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	544285	45394116	57137276	223	868											
TMOD2	29767	bcgsc.ca	37	chr15	52060462	52060462	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacctctttcttgtcagagtGccatgctgccagctggattt	6	14	9	12	0	3	1	1	0	2	1	3	2	3	2	3	1	4	2	3	1	0	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	TMOD2	NM_014548	exon3	c.G130T	p.A44S	CAGAGTGCCATGC	.	48	4	42	0	.	36	T	52060462	T	T	52060462	3	4	6	1	0	0	0	0	1	0	0	0	16294	1319	46	3	136	3	TMOD2	15	52060462	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6666346	52060462	50470930	224	869											
CILP	8483	hgsc.bcm.edu	37	chr15	65489606	65489606	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atcccactgcacttgaactcCagacaggcagctgagacatt	12	8	8	13	0	0	3	0	2	0	2	2	4	2	3	2	1	3	3	2	1	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003613	exon9	c.G3018T	p.L1006L	GAACTCCAGACAG	.	25	4	17	0	.	.	A	65489606	C	A	65489606	2	1	6	1	0	0	0	0	0	0	0	1	3451	581	21	3		3	CILP	15	65489606	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	13429144	65489606	37041786	225	870											
DENND4A	10260	hgsc.bcm.edu	37	chr15	65983620	65983620	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agaatttttgcatcagctccCaatttttcaactatatctcc	11	16	3	11	0	3	1	2	0	1	1	5	1	4	1	2	0	3	2	2	0	5	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144823	exon23	c.G3309T	p.L1103F	AGCTCCCAATTTT	.	35	4	38	0	.	.	A	65983620	C	A	65983620	3	1	6	1	0	0	0	0	1	0	0	0	4461	593	21	3	2455	3	DENND4A	15	65983620	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	494014	65983620	36547772	226	871											
NOX5	79400	hgsc.bcm.edu	37	chr15	69325389	69325389	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	cgcctctctcgcagcgctgcCcactggctgacggcccccgc	3	6	11	21	5	1	1	0	1	1	0	3	1	1	1	4	2	2	3	4	2	0	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NOX5,NS,carcinoma,0,1	NOX5	NM_024505	exon5	c.C627A	p.A209A	CGCTGCCCACTGG	.	33	2	28	0	.	0	A	69325389	C	A	69325389	2	1	6	1	0	0	0	0	0	0	0	1	10606	610	22	3		3	NOX5	15	69325389	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3341769	69325389	33206003	227	872											
FURIN	5045	hgsc.bcm.edu;bcgsc.ca	37	chr15	91421361	91421361	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccccccttcacggccaGgggtgcgcatgctggatggc	4	7	15	15	2	1	0	1	0	0	0	1	1	1	1	4	5	3	2	4	5	0	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002569	exon8	c.668-1G>T	.	CGGCCAGGGGTGC	.	62	4	71	0	.	.	T	91421361	G	T	91421361	5	4	6	1	0	0	0	0	0	0	1	0	6134	1014	35	3	693	3	FURIN	15	91421361	Splice_Site	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	22095972	91421361	11110031	228	873											
LYSMD4	145748	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	100272030	100272030	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaggctggtggacacCgctcttgtggcgctccttgc	3	10	16	12	2	1	0	0	0	1	0	2	2	2	2	2	6	1	3	2	6	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	LYSMD4	NM_152449	exon3	c.G87A	p.A29A	GGACACCGCTCTT	.	74	19	99	1	.	21	T	100272030	C	T	100272030	3	4	6	1	0	0	0	0	1	0	0	0	9173	639	23	1	822	1	LYSMD4	15	100272030	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8850669	100272030	2259362	229	874											
PPL	5493	broad.mit.edu	37	chr16	4945406	4945406	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttgtccagcaccttctcctgGtcctggagagaacggggtca	7	10	12	12	1	2	1	1	0	1	1	5	3	4	2	4	4	2	1	4	4	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PPL	NM_002705	exon11	c.C1098A	p.D366E	CTCCTGGTCCTGG	.	44	3	51	0	.	168	T	4945406	G	T	4945406	3	4	6	1	0	0	0	0	1	0	0	0	12383	1252	44	3	4220	3	PPL	16	4945406	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		4945406	85409347	230	875											
CIITA	4261	bcgsc.ca	37	chr16	11001930	11001930	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcgggccaagacttctccCtggacctccgcagcactggc	6	6	12	17	3	1	1	0	0	1	1	3	2	2	2	4	4	1	2	4	4	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CIITA	NM_000246	exon11	c.C2581A	p.L861M	TTCTCCCTGGACC	.	34	4	36	0	.	92	A	11001930	A	A	11001930	3	1	6	1	0	0	0	0	1	0	0	0	3450	680	24	3	2623	3	CIITA	16	11001930	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	6056524	11001930	79352823	231	876											
PRM3	58531	hgsc.bcm.edu	37	chr16	11367212	11367212	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cttgtggccctcctcctgccGctcaggctccagcagcagca	5	8	10	18	1	1	0	1	0	0	0	4	0	4	0	5	2	4	5	5	2	0	1	rs376400498	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PRM3,colon,carcinoma,0,1	PRM3	NM_021247	exon1	c.C241A	p.R81R	CCTGCCGCTCAGG	.	24	2	31	0	.	0	T	11367212	G	T	11367212	2	4	6	1	0	0	0	0	0	0	0	1	12586	1086	38	2		2	PRM3	16	11367212	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	365282	11367212	78987541	232	877											
ACSM5	54988	hgsc.bcm.edu	37	chr16	20448431	20448431	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acttttacatcacaggggacCgagctcgcatggacaaggat	12	8	11	10	2	1	0	1	0	0	0	2	4	1	3	1	4	2	2	1	4	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ACSM5,NS,carcinoma,0,1	ACSM5	NM_017888	exon11	c.C1366A	p.R456R	GGGGACCGAGCTC	.	51	3	52	0	.	0	A	20448431	C	A	20448431	2	1	6	1	0	0	0	0	0	0	0	1	187	644	23	2		2	ACSM5	16	20448431	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	9081219	20448431	69906322	233	878											
COG7	91949	broad.mit.edu	37	chr16	23415150	23415150	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggttgtggttgcttgacccTttttcctaagacaagaaaat	11	14	9	7	0	0	3	0	1	0	2	1	3	1	3	2	2	1	3	2	2	4	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COG7	NM_153603	exon13	c.A1668G	p.K556K	TGACCCTTTTTCC	.	70	3	79	0	.	62	C	23415150	T	C	23415150	2	2	6	1	0	0	0	0	0	0	0	1	3686	1606	56	4		4	COG7	16	23415150	Silent	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09	2966719	23415150	66939603	234	879											
SEPT1	1731	hgsc.bcm.edu	37	chr16	30392754	30392754	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	actctcatccctaaggtactGctcaaattgctcctcgatga	10	12	6	13	1	2	1	2	1	1	0	6	2	4	1	2	1	3	3	2	1	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SEPT1,NS,carcinoma,0,1	SEPT1	NM_052838	exon6	c.C487A	p.Q163K	GGTACTGCTCAAA	.	65	3	61	0	.	0	T	30392754	G	T	30392754	3	4	6	1	0	0	0	0	1	0	0	0	14113	1328	46	3	785	3	SEPT1	16	30392754	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6977604	30392754	59961999	235	880											
USP6	9098	bcgsc.ca	37	chr17	5040990	5040990	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgggacgtgtatttggtGgaaggagaacaggtgttgat	9	12	17	3	1	0	2	0	1	0	1	0	5	0	4	0	5	1	2	0	5	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	USP6	NM_004505	exon12	c.G870T	p.V290V	TTTGGTGGAAGGA	.	54	4	75	0	.	213	T	5040990	T	T	5040990	2	4	6	1	0	0	0	0	0	0	0	1	17146	1335	47	3		3	USP6	17	5040990	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		5040990	76154220	236	881											
NCOR1	9611	hgsc.bcm.edu	37	chr17	16040656	16040656	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtttcccataattcCttctgacgagggctttataa	8	15	7	11	2	2	1	0	1	2	0	4	2	4	1	2	1	1	2	2	1	3	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001190440	exon13	c.G1478T	p.R493M	TAATTCCTTCTGA	.	46	4	48	0	.	.	A	16040656	C	A	16040656	3	1	6	1	0	0	0	0	1	0	0	0	10282	681	24	3	5976	3	NCOR1	17	16040656	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	10999666	16040656	65154554	237	882											
TADA2A	6871	hgsc.bcm.edu	37	chr17	35827572	35827572	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtggaatttgaactcCgaagggaaatcaagaggctc	16	7	11	7	1	1	2	1	1	0	1	3	5	2	4	1	3	2	1	1	3	6	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TADA2A_ENST00000394395,NS,carcinoma,0,2	TADA2A_ENST00000394395	NM_001488	exon12	c.C838A	p.R280R	GAACTCCGAAGGG	.	41	3	46	0	.	0	A	35827572	C	A	35827572	2	1	6	1	0	0	0	0	0	0	0	1	15567	644	23	2		2	TADA2A	17	35827572	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	19786916	35827572	45367638	238	883											
GPR179	440435	broad.mit.edu;ucsc.edu	37	chr17	36489224	36489224	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagtgctgcaggtccagctcGtcctcacacacctcatccac	8	8	8	17	1	2	0	2	0	0	0	6	1	5	0	4	1	3	3	4	1	0	0	rs372049950		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GPR179	NM_001004334	exon10	c.C1947T	p.D649D	CAGCTCGTCCTCA	.	18	6	13	0	.	170	A	36489224	G	A	36489224	2	1	6	1	0	0	0	0	0	0	0	1	6714	1136	40	1		1	GPR179	17	36489224	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	661652	36489224	44705986	239	884											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37880219	37880220	+	Missense_Mutation	DNP	TT	TT	CC																															ttccagtggccatcaaagtgTtgagggaaaacacatccccc																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	TT	TT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ERBB2,NS,carcinoma,0,20	ERBB2	NM_004448	exon19	c.T2264C	p.L755P	AAGTGTTGAGGGA	.	24	10	26	0	.	0	CC	37880220	TT	CC	37880219	3	2	6	1	0	0	0	0	1	0	0	0	5234	1722	60	4	2337	4	ERBB2	17	37880219	Missense_Mutation	DNP	TT	TCGA-4G-AAZO-01A-12D-A417-09	1390995	37880219	43314991	240	885											
JUP	3728	bcgsc.ca	37	chr17	39912069	39912069	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aggtgtcgatggggtagtctCcatccatgtccatgtgcatc	7	12	12	10	1	1	0	0	0	1	0	6	1	3	0	3	3	1	2	3	3	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	JUP	NM_021991	exon14	c.G2165T	p.G722V	TAGTCTCCATCCA	.	19	4	22	0	.	64	A	39912069	A	A	39912069	3	1	6	1	0	0	0	0	1	0	0	0	8016	855	30	3	76	3	JUP	17	39912069	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2031850	39912069	41283141	241	886											
STAT5A	6776	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	40460310	40460310	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctatgtgtttcctgaccgccCcaaggatgaggtcttctcca	7	12	9	13	1	2	2	0	2	2	0	4	3	3	3	5	2	0	1	5	2	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003152	exon17	c.C2021A	p.P674H	ACCGCCCCAAGGA	.	40	4	44	0	.	.	A	40460310	C	A	40460310	3	1	6	1	0	0	0	0	1	0	0	0	15324	623	22	3	2079	3	STAT5A	17	40460310	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	548241	40460310	40734900	242	887											
SCRN2	90507	bcgsc.ca	37	chr17	45918185	45918185	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	aaagcagtcgcaggaacatgGggagtcagggctcgacgacg	12	4	16	9	4	1	0	1	0	0	0	3	4	1	2	0	4	2	3	0	4	2	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SCRN2	NM_138355	exon2	c.C25A	p.P9T	AACATGGGGAGTC	.	68	5	80	0	.	35	T	45918185	T	T	45918185	3	4	6	1	0	0	0	0	1	0	0	0	13993	1232	43	3	1298	3	SCRN2	17	45918185	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	5457875	45918185	35277025	243	888											
ABI3	51225	hgsc.bcm.edu	37	chr17	47299965	47299965	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggacaatgagctctccttctCtgagggcactgtcatctgtg	7	12	11	11	0	4	2	1	2	3	0	6	3	4	3	1	2	1	2	1	2	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABI3,scalp,carcinoma,0,1	ABI3	NM_016428	exon8	c.C989A	p.S330Y	CCTTCTCTGAGGG	.	24	2	22	0	.	0	A	47299965	C	A	47299965	3	1	6	1	0	0	0	0	1	0	0	0	90	913	32	3	1019	3	ABI3	17	47299965	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1381780	47299965	33895245	244	889											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60043913	60043913	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctgagaaaaccattctgctaCcaacttttctgatagtttct	11	15	5	10	0	3	2	0	2	3	1	3	3	3	2	2	0	4	2	2	0	5	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005121	exon19	c.G4291A	p.V1431I	CTGCTACCAACTT	.	56	14	54	0	.	.	T	60043913	C	T	60043913	3	4	6	1	0	0	0	0	1	0	0	0	9480	507	18	3	2281	3	MED13	17	60043913	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	12743948	60043913	21151297	245	890											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	71334731	71334731	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttcctcttctgatgtcaaaCaaatgatgaaaatcctgcta	13	14	5	9	0	3	3	1	3	2	0	5	3	5	3	2	0	2	1	2	0	5	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144952	exon45	c.G6514T	p.V2172F	GTCAAACAAATGA	.	47	15	31	0	.	.	A	71334731	C	A	71334731	3	1	6	1	0	0	0	0	1	0	0	0	14023	478	17	3	8	3	SDK2	17	71334731	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11290818	71334731	9860479	246	891											
SDK2	54549	hgsc.bcm.edu	37	chr17	71394551	71394551	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atcagcaaccactcctctccCtccccaaccacgcctacctg	9	7	3	22	1	2	0	1	0	1	0	5	0	4	0	8	0	4	1	8	0	3	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144952	exon23	c.G3111T	p.E1037D	CTCTCCCTCCCCA	.	94	4	126	0	.	.	A	71394551	C	A	71394551	3	1	6	1	0	0	0	0	1	0	0	0	14023	680	24	3	3499	3	SDK2	17	71394551	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	59820	71394551	9800659	247	892											
FDXR	2232	hgsc.bcm.edu	37	chr17	72859251	72859251	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agccaggcctggggccagagGggagcaacccagccttcagg	9	3	16	13	0	1	1	1	0	0	1	1	2	1	2	5	6	4	1	5	6	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FDXR,NS,carcinoma,0,1	FDXR	NM_001258012	exon11	c.C1421A	p.P474H	CCAGAGGGGAGCA	.	42	2	51	0	.	0	T	72859251	G	T	72859251	3	4	6	1	0	0	0	0	1	0	0	0	5840	1232	43	3	191	3	FDXR	17	72859251	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1464700	72859251	8335959	248	893											
EVPL	2125	broad.mit.edu	37	chr17	74003247	74003247	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcggtacccctccagtgcCgctggcaggagcagcaggcc	7	4	14	16	2	0	0	0	0	0	0	1	1	1	1	5	4	5	5	5	4	1	1	rs201429993		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	EVPL	NM_001988	exon22	c.G6039A	p.A2013A	CAGTGCCGCTGGC	.	51	3	53	0	C|0.999;T|0.001	155	T	74003247	C	T	74003247	2	4	6	1	0	0	0	0	0	0	0	1	5320	639	23	1		1	EVPL	17	74003247	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1143996	74003247	7191963	249	894											
KLHL14	57565	broad.mit.edu	37	chr18	30260289	30260289	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tattctccattgtgtacaccCcctgtgaaataaacatagac	13	12	5	11	0	1	2	0	1	1	1	2	2	1	2	3	0	2	1	3	0	6	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	KLHL14	NM_020805	exon7	c.G1431A	p.G477G	TACACCCCCTGTG	.	51	4	54	0	.	92	T	30260289	C	T	30260289	5	4	6	1	0	0	0	0	0	0	1	0	8413	637	22	3	467	3	KLHL14	18	30260289	Splice_Site	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		30260289	47816959	250	895											
KATNAL2	83473	hgsc.bcm.edu	37	chr18	44603829	44603829	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cttagcagcttctaacctgcCgtggtaagagaccaagagag	12	8	11	10	1	1	2	0	0	1	2	1	4	1	2	3	1	4	3	3	1	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KATNAL2,colon,carcinoma,0,1	KATNAL2	NM_031303	exon12	c.C992A	p.P331Q	ACCTGCCGTGGTA	.	43	3	39	0	.	0	A	44603829	C	A	44603829	3	1	6	1	0	0	0	0	1	0	0	0	8030	652	23	2	1034	2	KATNAL2	18	44603829	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	14343540	44603829	33473419	251	896											
ABCA7	10347	hgsc.bcm.edu	37	chr19	1052100	1052100	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgacgctggtgaaggcccGcctgcccctgaccaccaatg	7	6	11	17	2	0	3	0	3	0	0	0	3	0	3	7	2	1	1	7	2	2	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABCA7,caecum,carcinoma,0,1	ABCA7	NM_019112	exon22	c.G3122T	p.R1041L	AGGCCCGCCTGCC	.	21	2	16	0	.	0	T	1052100	G	T	1052100	3	4	6	1	0	0	0	0	1	0	0	0	37	1087	38	2	3204	2	ABCA7	19	1052100	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		1052100	58076883	252	897											
CELF5	60680	hgsc.bcm.edu	37	chr19	3281207	3281207	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcccctgcagggagcctcctCcagcctggtggtcaagttcg	5	8	13	15	1	1	0	1	0	0	0	4	1	3	1	6	3	3	2	6	3	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CELF5,NS,malignant_melanoma,0,2	CELF5	NM_021938	exon6	c.C614A	p.S205Y	CCTCCTCCAGCCT	.	51	3	44	0	.	0	A	3281207	C	A	3281207	3	1	6	1	0	0	0	0	1	0	0	0	3241	855	30	3	636	3	CELF5	19	3281207	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2229107	3281207	55847776	253	898											
KDM4B	23030	ucsc.edu;bcgsc.ca	37	chr19	5071058	5071058	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcacggcaagcgcctggagCggctggccatcggtaggtgc	7	5	17	12	4	0	0	0	0	0	0	1	1	0	1	2	6	4	4	2	6	2	1	rs151146933	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	KDM4B	NM_015015	exon7	c.C664T	p.R222W	CTGGAGCGGCTGG	.	46	5	50	0	C|1.000;A|0.000	120	T	5071058	C	T	5071058	3	4	6	1	0	0	0	0	1	0	0	0	8173	759	27	1	682	1	KDM4B	19	5071058	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1789851	5071058	54057925	254	899											
ZNF560	147741	hgsc.bcm.edu	37	chr19	9579006	9579006	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcctctccattttggtttCttgcctgttaacacaggaat	7	17	7	10	0	2	0	0	0	2	0	4	1	3	1	3	2	2	3	3	2	2	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF560,NS,carcinoma,0,1	ZNF560	NM_152476	exon10	c.G617T	p.R206I	TGGTTTCTTGCCT	.	39	2	38	0	.	0	A	9579006	C	A	9579006	3	1	6	1	0	0	0	0	1	0	0	0	18048	913	32	3	1759	3	ZNF560	19	9579006	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	4507948	9579006	49549977	255	900											
ZNF442	79973	hgsc.bcm.edu;bcgsc.ca	37	chr19	12461025	12461025	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catttacatttatagggtttCtctccagtgtgagttgtttc	7	19	8	7	0	1	1	0	1	1	0	4	1	2	1	1	1	1	3	1	1	3	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_030824	exon6	c.G1374T	p.E458D	GGGTTTCTCTCCA	.	65	4	49	0	.	.	A	12461025	C	A	12461025	3	1	6	1	0	0	0	0	1	0	0	0	17972	912	32	3	513	3	ZNF442	19	12461025	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2882019	12461025	46667958	256	901											
CYP4F3	4051	ucsc.edu	37	chr19	15760954	15760954	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccaagccaaggccaaatcCaagactttggacttcattga	13	9	7	12	0	1	2	1	1	0	1	3	3	3	3	4	2	1	0	4	2	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CYP4F3	NM_001199209	exon7	c.C879A	p.S293S	CAAATCCAAGACT	.	33	4	47	0	.	69	A	15760954	C	A	15760954	2	1	6	1	0	0	0	0	0	0	0	1	4213	581	21	3		3	CYP4F3	19	15760954	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	3299929	15760954	43368029	257	902											
OR10H1	26539	hgsc.bcm.edu	37	chr19	15918728	15918728	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccatgatgagcaggttgccCagcagcgtgaacaggtacat	11	7	13	10	1	0	3	0	3	0	0	0	3	0	3	2	2	6	4	2	2	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OR10H1,right_upper_lobe,carcinoma,0,1	OR10H1	NM_013940	exon1	c.G120T	p.L40L	GTTGCCCAGCAGC	.	50	3	37	0	.	0	A	15918728	C	A	15918728	2	1	6	1	0	0	0	0	0	0	0	1	10953	581	21	3		3	OR10H1	19	15918728	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	157774	15918728	43210255	258	903											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	22157097	22157097	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tccagtatgaattaccttatGtttagtaaggattgagaact	13	15	8	5	0	0	2	0	2	0	1	1	4	1	3	2	1	2	3	2	1	7	7	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007153	exon4	c.C739A	p.H247N	CCTTATGTTTAGT	.	46	24	36	0	.	.	T	22157097	G	T	22157097	3	4	6	1	0	0	0	0	1	0	0	0	17824	1377	48	3	3107	3	ZNF208	19	22157097	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6238369	22157097	36971886	259	904											
ZNF536	9745	hgsc.bcm.edu	37	chr19	31039277	31039277	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaatttccaagggtcCttgcaagctttcatggacag	9	12	12	8	0	1	1	1	1	0	0	3	2	3	2	2	3	2	2	2	3	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF536,caecum,carcinoma,0,1	ZNF536	NM_014717	exon4	c.C2751A	p.S917S	AGGGTCCTTGCAA	.	36	2	36	0	.	0	A	31039277	C	A	31039277	2	1	6	1	0	0	0	0	0	0	0	1	18031	668	24	3		3	ZNF536	19	31039277	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8882180	31039277	28089706	260	905											
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44832524	44832525	+	Frame_Shift_Del	DEL	CT	CT	-																															tggtttttctccagtgtgaaCtctctgatggccttgaaggt																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001083335	exon5	c.1804_1805del	p.602_602del	TGTGAACTCTCTG	.	61	12	75	0	.	.	-	44832525	CT	-	44832524	7	5	6	1	0	1	0	1	0	0	0	0	17696	565	20	0	941	0	ZFP112	19	44832524	Frame_Shift_Del	DEL	CT	TCGA-4G-AAZO-01A-12D-A417-09	13793247	44832524	14296459	261	906											
CEACAM20	125931	broad.mit.edu	37	chr19	45017504	45017504	+	RNA	DEL	T	T	-																															attgtggtttttggttttgcTttttttttttttttttttca																								rs10669399	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CEACAM20	.	.	.	.	TTTTGCTTTTTTT	.	11	4	4	0	.	31	-	45017504	T	-	45017504	6	5	6	0	1	1	0	1	0	0	0	0	3213	1624	56	0		0	CEACAM20	19	45017504	RNA	DEL	T	TCGA-4G-AAZO-01A-12D-A417-09	184980	45017504	14111479	262	907											
ARHGAP35	2909	hgsc.bcm.edu	37	chr19	47423517	47423517	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atgttctgggagaggaacagCgatttaaagcattacaaaag	16	9	11	5	1	1	1	0	0	1	1	1	4	1	2	0	2	4	2	0	2	6	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GRLF1_ENST00000317082,bladder,carcinoma,0,6	GRLF1_ENST00000317082	NM_004491	exon1	c.C1585A	p.R529R	GAACAGCGATTTA	.	41	2	36	0	.	0	A	47423517	C	A	47423517	2	1	6	1	0	0	0	0	0	0	0	1	6836	760	27	2		2	ARHGAP35	19	47423517	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2406013	47423517	11705466	263	908											
GRIN2D	2906	hgsc.bcm.edu;bcgsc.ca	37	chr19	48918188	48918188	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatcgacattctgaagCggctggcgcataccatcggc	8	9	11	13	4	2	1	0	1	2	0	4	2	2	1	1	3	3	3	1	3	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000836	exon6	c.C1480T	p.R494W	CTGAAGCGGCTGG	.	70	4	81	0	.	.	T	48918188	C	T	48918188	3	4	6	1	0	0	0	0	1	0	0	0	6823	759	27	1	1498	1	GRIN2D	19	48918188	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	1494671	48918188	10210795	264	909											
SIGLEC9	27180	hgsc.bcm.edu	37	chr19	51628378	51628378	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctcctacccctcgcatggCtggatttaccctggcccagt	5	12	8	16	1	1	0	0	0	1	0	3	1	1	1	5	3	2	2	5	3	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SIGLEC9,NS,carcinoma,0,1	SIGLEC9	NM_001198558	exon1	c.C147A	p.G49G	GCATGGCTGGATT	.	56	3	48	0	.	0	A	51628378	C	A	51628378	2	1	6	1	0	0	0	0	0	0	0	1	14370	784	28	3		3	SIGLEC9	19	51628378	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2710190	51628378	7500605	265	910											
ZNF613	79898	hgsc.bcm.edu	37	chr19	52448266	52448266	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcatatatatgccgtgattGtggaaaaggcttcattcaga	12	13	10	6	1	3	2	3	1	0	1	3	3	3	3	1	2	1	1	1	2	5	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF613,NS,carcinoma,0,1	ZNF613	NM_001031721	exon6	c.G1130T	p.C377F	GTGATTGTGGAAA	.	50	3	39	0	.	0	T	52448266	G	T	52448266	3	4	6	1	0	0	0	0	1	0	0	0	18095	1377	48	3	1144	3	ZNF613	19	52448266	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	819888	52448266	6680717	266	911											
ZNF432	9668	hgsc.bcm.edu;bcgsc.ca	37	chr19	52538068	52538068	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccacattcattgcatatgtaGggtttctctccagtatgagt	9	15	8	9	0	2	1	1	1	1	0	4	1	3	1	2	1	1	4	2	1	3	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014650	exon5	c.C864A	p.P288P	TATGTAGGGTTTC	.	34	4	36	0	.	.	T	52538068	G	T	52538068	2	4	6	1	0	0	0	0	0	0	0	1	17963	987	35	3		3	ZNF432	19	52538068	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	89802	52538068	6590915	267	912											
ZNF583	147949	hgsc.bcm.edu;bcgsc.ca	37	chr19	56934339	56934339	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcatccaaagttgtgacagtGggagcaagacatcttagtta	13	11	10	7	0	2	2	1	1	1	1	3	3	3	3	1	1	1	3	1	1	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001159861	exon5	c.G312T	p.V104V	GACAGTGGGAGCA	.	94	4	91	0	.	.	T	56934339	G	T	56934339	2	4	6	1	0	0	0	0	0	0	0	1	18072	1335	47	3		3	ZNF583	19	56934339	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4396271	56934339	2194644	268	913											
ZNF264	9422	hgsc.bcm.edu	37	chr19	57723025	57723025	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagagtccgtagccataactCatgtgagtcaggtaaagatc	13	10	10	8	1	2	3	2	1	0	2	4	3	3	3	2	1	2	2	2	1	5	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF264,NS,carcinoma,0,1	ZNF264	NM_003417	exon4	c.C560A	p.S187X	ATAACTCATGTGA	.	38	2	33	0	.	0	A	57723025	C	A	57723025	4	1	6	1	0	0	0	0	0	1	0	0	17862	838	29	3	574	3	ZNF264	19	57723025	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	788686	57723025	1405958	269	914											
ZNF586	54807	hgsc.bcm.edu;bcgsc.ca	37	chr19	58290630	58290630	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tctagtctcattaaacacagGaggattcacactggagagag	14	9	10	8	0	3	1	2	0	2	1	4	5	3	4	0	3	1	0	0	3	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_017652	exon3	c.G675T	p.R225S	ACACAGGAGGATT	.	56	4	38	0	.	.	T	58290630	G	T	58290630	3	4	6	1	0	0	0	0	1	0	0	0	18076	1165	41	3	685	3	ZNF586	19	58290630	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	567605	58290630	838353	270	915											
SIRPA	140885	hgsc.bcm.edu	37	chr20	1903045	1903045	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtgaggaagttctaccccCagagactacagctgacctgg	11	7	12	11	0	1	3	0	2	1	1	1	5	1	4	3	3	3	2	3	3	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001040022	exon5	c.C841A	p.Q281K	TACCCCCAGAGAC	.	67	5	69	0	.	.	A	1903045	C	A	1903045	3	1	6	1	0	0	0	0	1	0	0	0	14387	595	21	3	855	3	SIRPA	20	1903045	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		1903045	61122475	271	916											
HAO1	54363	hgsc.bcm.edu	37	chr20	7886918	7886918	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atatgcagcaagtccactgtCgtctccaaaattttcctcag	11	12	6	12	1	2	0	1	0	1	0	6	0	4	0	3	0	2	2	3	0	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HAO1,NS,carcinoma,0,1	HAO1	NM_017545	exon4	c.G604T	p.D202Y	CACTGTCGTCTCC	.	42	2	60	0	.	0	A	7886918	C	A	7886918	3	1	6	1	0	0	0	0	1	0	0	0	6992	884	31	2	528	2	HAO1	20	7886918	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	5983873	7886918	55138602	272	917											
PCSK2	5126	hgsc.bcm.edu	37	chr20	17462334	17462334	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catgtccaggctgtcatcacGgtcaacgcaaccagaagagg	12	6	11	12	2	3	2	3	0	0	2	4	2	4	2	2	3	2	2	2	3	3	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PCSK2,colon,carcinoma,0,1	PCSK2	NM_002594	exon12	c.G1536T	p.T512T	CATCACGGTCAAC	.	50	3	67	0	.	0	T	17462334	G	T	17462334	2	4	6	1	0	0	0	0	0	0	0	1	11648	1103	39	2		2	PCSK2	20	17462334	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	9575416	17462334	45563186	273	918											
ACSS2	55902	bcgsc.ca	37	chr20	33470783	33470783	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaagcttggagataaagttgCtttttactggtaaaaatatc	15	14	8	4	0	0	1	0	0	0	1	1	2	0	1	0	2	3	4	0	2	8	8	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ACSS2	NM_001076552	exon2	c.C365A	p.A122D	AAGTTGCTTTTTA	.	28	3	48	0	.	75	A	33470783	A	A	33470783	3	1	6	1	0	0	0	0	1	0	0	0	189	797	28	3	371	3	ACSS2	20	33470783	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	16008449	33470783	29554737	274	919											
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	39832673	39832673	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggatcatcactttgggaaggGccttggccgtgggcagtggc	6	9	17	9	1	2	0	2	0	0	0	2	2	2	2	2	6	0	1	2	6	1	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015035	exon3	c.C884G	p.A295G	GGAAGGGCCTTGG	.	33	15	31	0	.	.	C	39832673	G	C	39832673	3	2	6	1	0	0	0	0	1	0	0	0	17735	1203	42	5	1994	5	ZHX3	20	39832673	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	6361890	39832673	23192847	275	920											
DBNDD2	55861	hgsc.bcm.edu	37	chr20	44035143	44035143	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagtaccagtagccgcgctcGcaggggctgcctccgaccgc	7	5	13	16	5	0	0	0	0	0	0	2	1	1	0	5	2	3	5	5	2	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DBNDD2_ENST00000372720,colon,carcinoma,0,1	DBNDD2_ENST00000372720	NM_018478	exon1	c.G52A	p.A18T	GCGCTCGCAGGGG	.	21	2	22	0	.	0	A	44035143	G	A	44035143	3	1	6	1	0	0	0	0	1	0	0	0	4278	1102	38	1		1	DBNDD2	20	44035143	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	4202470	44035143	18990377	276	921											
CTSA	5476	hgsc.bcm.edu	37	chr20	44523350	44523350	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catctacaatctctatgcccCgtgtgctggaggggtgccca	7	10	11	13	1	2	0	0	0	2	0	3	1	2	1	3	3	4	1	3	3	3	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CTSA,NS,carcinoma,0,1	CTSA	NM_000308	exon9	c.C893A	p.P298Q	ATGCCCCGTGTGC	.	31	3	51	0	.	0	A	44523350	C	A	44523350	3	1	6	1	0	0	0	0	1	0	0	0	4053	652	23	2	927	2	CTSA	20	44523350	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	488207	44523350	18502170	277	922											
CDH22	64405	hgsc.bcm.edu	37	chr20	44879706	44879706	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acatacaggggctccgtgccCgtgtactcctctaccacgaa	9	8	9	15	3	1	0	0	0	1	0	3	1	3	0	4	2	4	2	4	2	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_021248	exon2	c.G228T	p.T76T	CGTGCCCGTGTAC	.	54	4	68	0	.	.	A	44879706	C	A	44879706	2	1	6	1	0	0	0	0	0	0	0	1	3129	639	23	2		2	CDH22	20	44879706	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	356356	44879706	18145814	278	923											
NCOA3	8202	hgsc.bcm.edu	37	chr20	46279833	46279833	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcagcagcagcagcaGcaacagcagcagcagcagca	15	1	12	13	0	0	0	0	0	0	0	0	0	0	0	0	0	13	12	0	0	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	25	2	24	1	.	0	A	46279833	G	A	46279833	2	1	6	1	0	0	0	0	0	0	0	1	10277	962	34	3		3	NCOA3	20	46279833	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	1400127	46279833	16745687	279	924											
KCNQ2	3785	hgsc.bcm.edu	37	chr20	62071037	62071037	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgggggtacttgtcccCgtagccaatggtggtcagcg	5	10	16	10	2	2	0	1	0	1	0	3	0	3	0	3	5	3	2	3	5	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172106	exon6	c.G841T	p.G281W	TGTCCCCGTAGCC	.	91	4	84	0	.	.	A	62071037	C	A	62071037	3	1	6	1	0	0	0	0	1	0	0	0	8127	652	23	2	1889	2	KCNQ2	20	62071037	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	15791204	62071037	954483	280	925											
SYNJ1	8867	bcgsc.ca	37	chr21	34072179	34072179	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attatcagttgtctgttcttGcatgctacgatgcgcattaa	9	16	8	8	2	3	0	1	0	2	0	3	1	3	0	0	0	4	5	0	0	3	6	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SYNJ1	NM_203446	exon4	c.C565A	p.Q189K	GTTCTTGCATGCT	.	27	3	33	0	.	253	T	34072179	T	T	34072179	3	4	6	1	0	0	0	0	1	0	0	0	15509	1328	46	3	4423	3	SYNJ1	21	34072179	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09		34072179	14057716	281	926											
COL18A1	80781	hgsc.bcm.edu	37	chr21	46932175	46932175	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagctactgtgagacgtggCggacggaggctccctcggcc	7	6	16	12	4	0	2	0	1	0	2	2	5	1	4	2	5	2	2	2	5	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_030582	exon42	c.C4414T	p.R1472W	ACGTGGCGGACGG	.	34	4	42	0	.	.	T	46932175	C	T	46932175	3	4	6	1	0	0	0	0	1	0	0	0	3698	759	27	1	5399	1	COL18A1	21	46932175	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	12859996	46932175	1197720	282	927											
COL6A1	1291	broad.mit.edu	37	chr21	47421295	47421295	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggctgagccgggacgagctgGtcaaggtgaggcctcgcccc	6	5	17	13	3	1	2	1	2	0	0	2	4	1	3	4	5	2	2	4	5	1	0	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COL6A1	NM_001848	exon30	c.G1951C	p.V651L	GAGCTGGTCAAGG	.	10	3	26	0	.	101	C	47421295	G	C	47421295	3	2	6	1	0	0	0	0	1	0	0	0	3722	1261	44	5	2069	5	COL6A1	21	47421295	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	489120	47421295	708600	283	928											
CLTCL1	8218	bcgsc.ca	37	chr22	19226799	19226799	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagagcagcacattcgtaccTgcatagccactggaaaatca	14	7	9	11	1	1	1	1	0	0	1	2	3	1	2	2	1	5	4	2	1	4	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CLTCL1	NM_001835	exon5	c.A794T	p.Q265L	CGTACCTGCATAG	.	55	4	54	0	.	115	A	19226799	A	A	19226799	3	1	6	1	0	0	0	0	1	0	0	0	3590	1594	55	5	4240	5	CLTCL1	22	19226799	Missense_Mutation	SNP	T	TCGA-4G-AAZO-01A-12D-A417-09		19226799	32077767	284	929											
DGCR8	54487	hgsc.bcm.edu	37	chr22	20073625	20073625	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaacgtccagtggtgcaGaggtaatggacgttggctct	9	10	14	8	2	1	1	0	0	1	1	2	2	2	2	1	4	3	5	1	4	2	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DGCR8,NS,NS,0,1	DGCR8	NM_001190326	exon2	c.G139T	p.E47X	GGTGCAGAGGTAA	.	38	2	47	0	.	0	T	20073625	G	T	20073625	4	4	6	1	0	0	0	0	0	1	0	0	4492	943	33	3	141	3	DGCR8	22	20073625	Nonsense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	846826	20073625	31230941	285	930											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885823	29885823	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaaggaagaagcaaagAcccccgagaaggccaagtcc	16	2	12	11	1	0	4	0	1	0	3	1	6	1	5	4	2	1	1	4	2	6	0	rs145125701		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NEFH,NS,lymphoid_neoplasm,0,2	NEFH	NM_021076	exon4	c.A2194T	p.T732S	GCAAAGACCCCCG	.	78	4	67	0	.	0	T	29885823	A	T	29885823	3	4	6	1	0	0	0	0	1	0	0	0	10361	275	10	5	2208	5	NEFH	22	29885823	Missense_Mutation	SNP	A	TCGA-4G-AAZO-01A-12D-A417-09	9812198	29885823	21418743	286	931											
DDX17	10521	ucsc.edu;bcgsc.ca	37	chr22	38881994	38881994	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagggtattggtaggcagtCtgccccatgtaacctatcat	9	11	12	9	0	2	0	1	0	1	0	2	1	2	1	3	4	2	4	3	4	4	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DDX17	NM_001098504	exon13	c.G2142T	p.Q714H	GGCAGTCTGCCCC	.	27	4	26	0	.	73	A	38881994	C	A	38881994	3	1	6	1	0	0	0	0	1	0	0	0	4367	912	32	3	57	3	DDX17	22	38881994	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	8996171	38881994	12422572	287	932											
DMC1	11144	ucsc.edu;bcgsc.ca	37	chr22	38917699	38917699	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gcatgagccagaatgtgtccCccaatgggttttttgggatc	8	12	12	9	0	0	2	0	1	0	1	2	3	1	3	3	2	1	2	3	2	2	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DMC1	NM_007068	exon13	c.G867T	p.G289G	GTGTCCCCCAATG	.	31	4	31	0	.	33	A	38917699	C	A	38917699	2	1	6	1	0	0	0	0	0	0	0	1	4607	610	22	3		3	DMC1	22	38917699	Silent	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	35705	38917699	12386867	288	933											
MID1	4281	hgsc.bcm.edu;bcgsc.ca	37	chrX	10422989	10422989	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tccagctactccatagctccCctggctggtgaagcgttcag	7	10	10	14	1	1	1	1	1	0	0	4	1	4	1	4	2	4	4	4	2	3	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001193277	exon9	c.G1576T	p.G526W	AGCTCCCCTGGCT	.	69	5	99	0	.	.	A	10422989	C	A	10422989	3	1	6	1	0	0	0	0	1	0	0	0	9624	623	22	3	435	3	MID1	23	10422989	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09		10422989	144847571	289	934											
TLR8	51311	hgsc.bcm.edu	37	chrX	12939080	12939080	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaaaggtctcaagaatCtgacacgtctggatttatcc	11	14	7	9	1	4	2	2	1	3	1	6	3	5	3	1	2	0	0	1	2	4	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_138636	exon2	c.C1921A	p.L641M	AAGAATCTGACAC	.	89	4	92	0	.	.	A	12939080	C	A	12939080	3	1	6	1	0	0	0	0	1	0	0	0	16017	912	32	3	1927	3	TLR8	23	12939080	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	2516091	12939080	142331480	290	935											
GPM6B	2824	hgsc.bcm.edu;bcgsc.ca	37	chrX	13801543	13801543	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccgtgcagttctttcaCtgcacttgtggtgtaaaagc	8	13	9	11	1	3	0	2	0	1	0	3	0	3	0	1	1	3	4	1	1	2	4	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001001995	exon4	c.G466T	p.V156L	CTTTCACTGCACT	.	66	4	71	0	.	.	A	13801543	C	A	13801543	3	1	6	1	0	0	0	0	1	0	0	0	6656	565	20	3	625	3	GPM6B	23	13801543	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	862463	13801543	141469017	291	936											
DMD	1756	bcgsc.ca	37	chrX	32519901	32519901	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tctgttccaccagggcctgaGctgatctgctggcatcttgc	5	12	11	13	0	3	2	0	2	3	0	4	2	4	2	3	2	3	4	3	2	0	2	rs1800260	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DMD	NM_004006	exon19	c.C2351A	p.A784D	GCCTGAGCTGATC	.	24	3	26	0	G|1.000;|0.000	2127	T	32519901	T	T	32519901	3	4	6	1	0	0	0	0	1	0	0	0	4608	971	34	3	9193	3	DMD	23	32519901	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	18718358	32519901	122750659	292	937											
CFP	5199	hgsc.bcm.edu	37	chrX	47487614	47487614	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agcgccggtaccgcagctggGagccctcagagcacgtcacc	8	4	13	16	4	2	1	2	0	0	1	2	2	2	2	4	2	5	4	4	2	1	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001145252	exon3	c.C290A	p.S97Y	AGCTGGGAGCCCT	.	48	4	74	0	.	.	T	47487614	G	T	47487614	3	4	6	1	0	0	0	0	1	0	0	0	3315	1174	41	3	1147	3	CFP	23	47487614	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	14967713	47487614	107782946	293	938											
XAGE3	170626	hgsc.bcm.edu;bcgsc.ca	37	chrX	52893907	52893907	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttgactgagacagctcctgGagatcagcttccaggtcagg	9	10	12	10	0	2	3	2	2	0	2	4	5	4	3	2	3	2	2	2	3	0	2	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_133179	exon4	c.C210A	p.L70L	CTCCTGGAGATCA	.	98	5	105	0	.	.	T	52893907	G	T	52893907	2	4	6	1	0	0	0	0	0	0	0	1	17480	1161	41	3		3	XAGE3	23	52893907	Silent	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	5406293	52893907	102376653	294	939											
SATL1	340562	hgsc.bcm.edu;bcgsc.ca	37	chrX	84358922	84358922	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttcacaggcagccaattcCtgtcaaagtagataaaacct	14	11	6	10	0	2	1	2	0	0	1	3	1	3	1	3	1	2	2	3	1	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001012980	exon3	c.1642-1G>T	.	CAATTCCTGTCAA	.	69	4	91	0	.	.	A	84358922	C	A	84358922	5	1	6	1	0	0	0	0	0	0	1	0	13908	695	24	3	273	3	SATL1	23	84358922	Splice_Site	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	31465015	84358922	70911638	295	940											
DIAPH2	1730	ucsc.edu	37	chrX	96048621	96048621	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcccttctcactgtatcctCacatattaggaagaggaagc	11	12	7	11	0	2	1	2	0	1	1	5	3	4	3	2	2	1	1	2	2	5	5	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DIAPH2	.	.	.	.	TATCCTCACATAT	.	35	4	31	0	.	148	A	96048621	C	A	96048621	4	1	6	1	0	0	0	0	0	1	0	0	4547	841	29	3		3	DIAPH2	23	96048621	Nonsense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	11689699	96048621	59221939	296	941											
TRPC5	7224	bcgsc.ca	37	chrX	111155896	111155896	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acactccacacagttgcagcGgatctggtggggccgtggga	8	7	15	11	2	1	0	0	0	1	0	2	2	2	2	2	5	2	2	2	5	0	1	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	TRPC5	NM_012471	exon3	c.C523A	p.R175S	TGCAGCGGATCTG	.	14	3	22	0	.	142	T	111155896	T	T	111155896	3	4	6	1	0	0	0	0	1	0	0	0	16643	1116	39	2	2434	2	TRPC5	23	111155896	Missense_Mutation	SNP	G	TCGA-4G-AAZO-01A-12D-A417-09	15107275	111155896	44114664	297	942											
RBMX	27316	hgsc.bcm.edu;bcgsc.ca	37	chrX	135958731	135958731	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcttaggaggaggaccccCacttcttggtggtggtcctc	5	12	12	12	0	2	0	0	0	2	0	5	3	3	3	3	6	0	0	3	6	1	3	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002139	exon5	c.G472T	p.G158W	GACCCCCACTTCT	.	73	4	73	0	.	.	A	135958731	C	A	135958731	3	1	6	1	0	0	0	0	1	0	0	0	13203	594	21	3	778	3	RBMX	23	135958731	Missense_Mutation	SNP	C	TCGA-4G-AAZO-01A-12D-A417-09	24802835	135958731	19311829	298	943											
ZNF185	7739	hgsc.bcm.edu	37	chrX	152085855	152085856	+	Frame_Shift_Ins	INS	-	-	TA																															ttcaccaagcccatagacagINSctcttcccagccccagcagc																								novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001178106	exon5	c.290_291insTA	p.S97fs	TAGACAGCTCTTC	.	53	25	58	0	.	.	TA	152085856	-	TA	152085855	7	5	6	1	0	1	1	0	0	0	0	0	17810	971	34	0	308	0	ZNF185	23	152085855	Frame_Shift_Ins	INS	-	TCGA-4G-AAZO-01A-12D-A417-09	16127124	152085855	3184705	299	944											
KIAA1751	85452	hgsc.bcm.edu	37	chr1	1920371	1920371	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcctcagcttcctgtagaaGacatttgatgtcaaactccg	11	12	7	11	1	2	3	2	1	0	2	5	3	5	3	3	0	2	2	3	0	3	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	KIAA1751,NS,carcinoma,0,1	KIAA1751	NM_001080484	exon3	c.C109A	p.L37I	GTAGAAGACATTT	.	64	2	67	0	.	0	T	1920371	G	T	1920371	3	4	7	1	0	0	0	0	1	0	0	0	8298	942	33	3	2243	3	KIAA1751	1	1920371	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		1920371	247330250	1	945											
TNFRSF14	8764	hgsc.bcm.edu	37	chr1	2493248	2493248	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tatgtgtgaaaagaagaaagCcaaggggtgagcacacggcg	15	5	15	6	2	0	4	0	2	0	2	0	4	0	4	1	3	2	1	1	3	6	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_003820	exon6	c.C688T	p.P230S	AGAAAGCCAAGGG	.	76	4	73	0	.	.	T	2493248	C	T	2493248	3	4	7	1	0	0	0	0	1	0	0	0	16349	739	26	3	710	3	TNFRSF14	1	2493248	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	572877	2493248	246757373	2	946											
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	15987540	15987540	+	Frame_Shift_Del	DEL	A	A	-																															ctgagggccaaaccagtattAaagacctttctgaaagatgg																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006511	exon1	c.1176delT	p.I392fs	AGTATTAAAGACC	.	38	14	41	0	.	.	-	15987540	A	-	15987540	7	5	7	1	0	1	0	1	0	0	0	0	13750	363	13	0	1179	0	RSC1A1	1	15987540	Frame_Shift_Del	DEL	A	TCGA-4G-AAZT-01A-11D-A417-09	13494292	15987540	233263081	3	947											
NBPF1	55672	broad.mit.edu	37	chr1	16892237	16892237	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caactggaaggagttgaataAcatctatccagtgagtcctg	13	10	10	8	0	1	2	0	2	1	0	3	4	3	4	2	2	2	1	2	2	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TGAATAACATCTA	.	48	6	50	0	.	.	C	16892237	A	C	16892237	3	2	7	1	0	0	0	0	1	0	0	0	10240	41	2	4	476	4	NBPF1	1	16892237	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	904697	16892237	232358384	4	948											
ARID1A	8289	broad.mit.edu	37	chr1	27099298	27099318	+	Splice_Site	DEL	TGGAGCAGGAGCAATTCAGTT	TGGAGCAGGAGCAATTCAGTT	-																															ttacttggttttcctcactcTggagcaggagcaattcagtt																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ARID1A	NM_139135	exon14	c.3540_3555del	p.1180_1185del	TCACTCTGGAGCA	.	17	3	12	0	.	842	-	27099318	TGGAGCAGGAGCAATTCAGTT	-	27099298	8	5	7	1	0	1	0	1	0	0	1	0	910	1595	55	0		0	ARID1A	1	27099298	Splice_Site	DEL	TGGAGCAGGAGCAATTCAGTT	TCGA-4G-AAZT-01A-11D-A417-09	10207061	27099298	222151323	5	949											
YARS	8565	hgsc.bcm.edu	37	chr1	33246690	33246690	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccccacacggatatccagccGggatgggatgacctcctctg	8	7	11	15	2	1	1	0	1	1	0	3	4	3	4	6	3	1	0	6	3	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	YARS,caecum,carcinoma,0,1	YARS	NM_003680	exon10	c.C1099A	p.R367R	CCAGCCGGGATGG	.	50	2	34	0	.	0	T	33246690	G	T	33246690	2	4	7	1	0	0	0	0	0	0	0	1	17527	1115	39	2		2	YARS	1	33246690	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	6147392	33246690	216003931	6	950											
MMACHC	25974	hgsc.bcm.edu	37	chr1	45966021	45966021	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgctatggagccgaaagtcgCagagctgaagcagaagatcg	13	5	14	9	4	0	4	0	1	0	3	2	6	0	5	1	1	3	4	1	1	4	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015506	exon1	c.C17T	p.A6V	AAGTCGCAGAGCT	.	88	4	45	0	.	.	T	45966021	C	T	45966021	3	4	7	1	0	0	0	0	1	0	0	0	9689	710	25	3	19	3	MMACHC	1	45966021	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	12719331	45966021	203284600	7	951											
CYP4B1	1580	hgsc.bcm.edu	37	chr1	47264867	47264867	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctgcggaggcagacGttggctaaggctatggacaa	9	8	15	9	2	0	1	0	0	0	1	0	3	0	3	0	5	3	6	0	5	3	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CYP4B1,NS,carcinoma,0,1	CYP4B1	NM_000779	exon1	c.G114A	p.T38T	GCAGACGTTGGCT	.	29	2	20	0	.	0	A	47264867	G	A	47264867	2	1	7	1	0	0	0	0	0	0	0	1	4208	1132	40	1		1	CYP4B1	1	47264867	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	1298846	47264867	201985754	8	952											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	112999056	112999056	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtctgtgttttgccaaacAgagagttttccagcagaaag	12	12	10	7	0	1	2	0	0	1	2	2	3	2	2	2	0	3	3	2	0	2	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_018704	exon6	c.A942G	p.T314T	CCAAACAGAGAGT	.	20	4	15	0	.	.	G	112999056	A	G	112999056	2	3	7	1	0	0	0	0	0	0	0	1	4070	175	7	4		4	CTTNBP2NL	1	112999056	Silent	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	65734189	112999056	136251565	9	953											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152283924	152283924	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagctgtctcgtgcctgctcGtggtgggatccttgtcttcg	2	14	14	11	3	2	0	0	0	2	0	6	2	3	1	2	2	3	2	2	2	0	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002016	exon3	c.C3438T	p.H1146H	CTGCTCGTGGTGG	.	110	44	51	0	.	.	A	152283924	G	A	152283924	2	1	7	1	0	0	0	0	0	0	0	1	5955	1136	40	1		1	FLG	1	152283924	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	39284868	152283924	96966697	10	954											
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	201980321	201980334	+	Frame_Shift_Del	DEL	CAGCTCGGAGGACT	CAGCTCGGAGGACT	-																															aactacttcagtgcgatgtaCagctcggaggactccaccct																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	CAGCTCGGAGGACT	CAGCTCGGAGGACT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004433	exon2	c.56_69del	p.19_23del	GATGTACAGCTCG	.	29	10	28	0	.	.	-	201980334	CAGCTCGGAGGACT	-	201980321	7	5	7	1	0	1	0	1	0	0	0	0	5083	489	17	0	59	0	ELF3	1	201980321	Frame_Shift_Del	DEL	CAGCTCGGAGGACT	TCGA-4G-AAZT-01A-11D-A417-09	49696397	201980321	47270300	11	955											
CAMK1G	57172	hgsc.bcm.edu	37	chr1	209785272	209785272	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	aaacctctagacccagctccCctgagatcaccatcaccgag	12	6	6	17	1	3	2	2	1	1	2	4	4	4	2	6	0	2	1	6	0	2	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CAMK1G,NS,malignant_melanoma,0,1	CAMK1G	NM_020439	exon11	c.C1051A	p.P351T	AGCTCCCCTGAGA	.	42	2	37	0	.	0	A	209785272	C	A	209785272	3	1	7	1	0	0	0	0	1	0	0	0	2616	623	22	3	1089	3	CAMK1G	1	209785272	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	7804951	209785272	39465349	12	956											
TMEM206	55248	hgsc.bcm.edu	37	chr1	212538674	212538674	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaaataatgccaagaaggcGccacagagaagagcaattgt	17	7	10	7	1	0	3	0	0	0	3	0	4	0	3	2	1	2	1	2	1	7	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TMEM206,colon,carcinoma,0,1	TMEM206	NM_001198862	exon9	c.C1119A	p.G373G	GAAGGCGCCACAG	.	40	2	6	0	.	0	T	212538674	G	T	212538674	2	4	7	1	0	0	0	0	0	0	0	1	16191	1074	38	2		2	TMEM206	1	212538674	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	2753402	212538674	36711947	13	957											
OBSCN	84033	ucsc.edu	37	chr1	228503595	228503595	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agaatgtggaggcgctggagGgcggcgaggcgctgttcgag	7	6	21	7	5	0	1	0	0	0	1	1	5	0	3	0	6	0	3	0	6	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	OBSCN	NM_001271223	exon61	c.G15931T	p.G5311C	CTGGAGGGCGGCG	.	40	4	39	0	.	2142	T	228503595	G	T	228503595	3	4	7	1	0	0	0	0	1	0	0	0	10860	1232	43	3	13254	3	OBSCN	1	228503595	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	15964921	228503595	20747026	14	958											
C1orf198	84886	hgsc.bcm.edu	37	chr1	230979495	230979495	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggtggggcccagggCgtccaggctggaggacctgc	4	7	17	13	1	0	0	0	0	0	0	2	2	2	2	4	7	1	1	4	7	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	C1orf198,NS,carcinoma,0,1	C1orf198	NM_032800	exon3	c.G532A	p.A178T	CCAGGGCGTCCAG	.	48	3	14	0	.	0	T	230979495	C	T	230979495	3	4	7	1	0	0	0	0	1	0	0	0	2039	768	27	1	459	1	C1orf198	1	230979495	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	2475900	230979495	18271126	15	959											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	236205367	236205367	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagaggacgctgggcacactGtatgtgtcagcacctcccct	8	8	12	13	1	1	1	1	0	0	1	2	3	2	2	3	2	1	4	3	2	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002508	exon4	c.C978T	p.Y326Y	CACACTGTATGTG	.	24	10	10	0	.	.	A	236205367	G	A	236205367	2	1	7	1	0	0	0	0	0	0	0	1	10461	1372	48	3		3	NID1	1	236205367	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	5225872	236205367	13045254	16	960											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu	37	chr1	240371625	240371625	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctccccctctacccggagcGggcataccccctccgccccc	4	5	7	25	3	1	0	0	0	1	0	3	1	3	1	9	2	3	1	9	2	2	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020066	exon5	c.G3513A	p.A1171A	CGGAGCGGGCATA	.	124	5	69	0	.	.	A	240371625	G	A	240371625	2	1	7	1	0	0	0	0	0	0	0	1	5983	1103	39	1		1	FMN2	1	240371625	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	4166258	240371625	8878996	17	961											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	240374462	240374462	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttgtcatgaatttgaggaatTattttctaaaactgctgtaa	13	17	7	4	0	2	2	1	2	1	0	2	3	2	3	0	1	2	2	0	1	6	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020066	exon6	c.T3992A	p.L1331X	AGGAATTATTTTC	.	56	22	26	0	.	.	A	240374462	T	A	240374462	4	1	7	1	0	0	0	0	0	1	0	0	5983	1764	61	5	4014	5	FMN2	1	240374462	Nonsense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	2837	240374462	8876159	18	962											
OR2G2	81470	hgsc.bcm.edu	37	chr1	247752208	247752208	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagtggatcatttcatctgcGaggtccctgtgctcatcaag	9	12	10	10	1	5	0	4	0	1	0	6	2	6	1	1	2	2	1	1	2	2	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	OR2G2,NS,carcinoma,0,1	OR2G2	NM_001001915	exon1	c.G547T	p.E183X	ATCTGCGAGGTCC	.	42	2	24	0	.	0	T	247752208	G	T	247752208	4	4	7	1	0	0	0	0	0	1	0	0	11046	1059	37	2	549	2	OR2G2	1	247752208	Nonsense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	7377746	247752208	1498413	19	963											
XIRP2	129446	hgsc.bcm.edu	37	chr2	168099965	168099965	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaggacataactgggggggAtgtcaagactgtgagataca	14	8	14	5	0	1	2	1	1	0	2	1	5	1	4	0	4	2	0	0	4	4	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	XIRP2,NS,carcinoma,0,2	XIRP2	NM_152381	exon9	c.A2063G	p.D688G	GGGGGGATGTCAA	.	40	3	14	0	.	0	G	168099965	A	G	168099965	3	3	7	1	0	0	0	0	1	0	0	0	17490	333	12	4	2093	4	XIRP2	2	168099965	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09		168099965	75099408	20	964											
TMEFF2	23671	hgsc.bcm.edu	37	chr2	192815056	192815056	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttagattaacctcgtggacGctcttgttgtattgtctgaa	8	17	9	7	2	2	2	0	1	2	1	3	3	2	3	1	1	1	3	1	1	4	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TMEFF2,colon,carcinoma,0,1	TMEFF2	NM_016192	exon10	c.C1106A	p.A369E	GTGGACGCTCTTG	.	35	2	18	0	.	0	T	192815056	G	T	192815056	3	4	7	1	0	0	0	0	1	0	0	0	16074	1087	38	2	22	2	TMEFF2	2	192815056	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	24715091	192815056	50384317	21	965											
STRADB	55437	bcgsc.ca	37	chr2	202344886	202344886	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgaaaaagactcataCtgggaattctagggctgcca	13	9	10	9	0	2	3	1	2	1	1	2	4	2	4	2	2	2	1	2	2	5	3	rs146098224		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	STRADB	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA	.	81	7	39	0	.	33	T	202344886	T	T	202344886	2	4	7	1	0	0	0	0	0	0	0	1	15381	576	20	3		3	STRADB	2	202344886	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	9529830	202344886	40854487	22	966											
SPAG16	79582	hgsc.bcm.edu	37	chr2	214794782	214794782	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaaggacacagccgcgCagtgtggtcctgcacatggc	8	8	13	12	2	0	1	0	1	0	0	1	2	1	2	2	3	2	2	2	3	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024532	exon12	c.C1313T	p.A438V	GCCGCGCAGTGTG	.	81	4	59	0	.	.	T	214794782	C	T	214794782	3	4	7	1	0	0	0	0	1	0	0	0	15034	710	25	3	1375	3	SPAG16	2	214794782	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	12449896	214794782	28404591	23	967											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	223161877	223161877	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tggttgggcagcggcctgccGttgataaaaacaccgccgag	9	7	14	11	4	0	1	0	1	0	0	0	2	0	1	4	3	3	3	4	3	3	3	rs104893652	bycluster;alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_181457	exon2	c.C141A	p.N47K	CCTGCCGTTGATA	.	43	25	23	0	.	.	T	223161877	G	T	223161877	3	4	7	1	0	0	0	0	1	0	0	0	11527	1136	40	2	1541	2	PAX3	2	223161877	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	8367095	223161877	20037496	24	968											
TRAF3IP1	26146	hgsc.bcm.edu	37	chr2	239242655	239242655	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caacaaaaacatcaaaacggCgatccaaaaattcagtggaa	21	5	6	9	2	2	0	2	0	0	0	3	2	3	1	1	2	3	0	1	2	8	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015650	exon7	c.C1042T	p.R348X	AAACGGCGATCCA	.	94	3	59	0	.	.	T	239242655	C	T	239242655	4	4	7	1	0	0	0	0	0	1	0	0	16501	760	27	1	1068	1	TRAF3IP1	2	239242655	Nonsense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	16080778	239242655	3956718	25	969											
SNED1	25992	hgsc.bcm.edu	37	chr2	241979571	241979571	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggctctgcggtgtgtgtgtgCcaggccggatacaccggagc	5	8	17	11	3	1	0	0	0	1	0	1	2	1	2	3	5	4	1	3	5	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SNED1,NS,carcinoma,0,1	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC	.	39	2	24	0	.	0	T	241979571	C	T	241979571	2	4	7	1	0	0	0	0	0	0	0	1	14899	747	26	3		3	SNED1	2	241979571	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	2736916	241979571	1219802	26	970											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	440009	440009	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatatagttcgcctaatgaCtaagaattggggcgataatg	14	11	10	6	2	0	2	0	1	0	1	1	3	0	2	1	2	0	1	1	2	6	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006614	exon25	c.C3194G	p.T1065S	TAATGACTAAGAA	.	57	40	35	0	.	.	G	440009	C	G	440009	3	3	7	1	0	0	0	0	1	0	0	0	3371	565	20	5	3284	5	CHL1	3	440009	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		440009	197582421	27	971											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13383292	13383292	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gattctctgtccagctttatTggtcacacttgcagttagac	8	15	8	10	0	2	1	1	0	1	1	4	2	3	1	1	1	2	3	1	1	2	6	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024923	exon23	c.A3184C	p.N1062H	CTTTATTGGTCAC	.	32	19	25	0	.	.	G	13383292	T	G	13383292	3	3	7	1	0	0	0	0	1	0	0	0	10808	1812	63	4	2551	4	NUP210	3	13383292	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	12943283	13383292	184639138	28	972											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52439916	52439916	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctgaatcagctctggctgtgTtactcttatcagctaacaac	10	13	7	11	0	4	1	2	1	2	0	4	1	4	1	0	1	5	4	0	1	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004656	exon10	c.A796C	p.T266P	GCTGTGTTACTCT	.	18	11	17	0	.	.	G	52439916	T	G	52439916	3	3	7	1	0	0	0	0	1	0	0	0	1309	1725	60	4	1425	4	BAP1	3	52439916	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	39056624	52439916	145582514	29	973			1	1		2	2	15	T		5.879005e-05
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52439930	52439930	+	Splice_Site	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gctgtgttactcttatcagcTaacaacagaatccagggctc	11	11	8	11	0	2	1	1	0	1	1	4	1	3	1	1	1	4	4	1	1	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	BAP1,colon,carcinoma,0,3	BAP1	NM_004656	exon11	c.784-2A>G	.	ATCAGCTAACAAC	.	20	12	16	0	.	0	C	52439930	T	C	52439930	5	2	7	1	0	0	0	0	0	0	1	0	1309	1536	53	4	1439	4	BAP1	3	52439930	Splice_Site	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	14	52439930	145582500	30	974			1	1		2	2	15	T		5.879005e-05
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu	37	chr3	52651496	52651496	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tctgcctgaacctggctctcGagcttcaagaacaacattga	11	10	8	12	1	3	3	1	2	2	1	4	4	3	3	2	1	5	2	2	1	4	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PBRM1_ENST00000296302,NS,carcinoma,0,1	PBRM1_ENST00000296302	NM_018313	exon15	c.C1600T	p.R534X	GCTCTCGAGCTTC	.	24	3	20	0	.	0	A	52651496	G	A	52651496	4	1	7	1	0	0	0	0	0	1	0	0	11538	1066	37	1	3368	1	PBRM1	3	52651496	Nonsense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	211566	52651496	145370934	31	975											
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	57272144	57272144	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaaaagttatagatgaGgtaaacgtttattttatttt	13	20	6	2	1	1	2	1	1	0	1	1	2	1	2	0	1	1	3	0	1	8	11	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_012096	exon4	c.G285T	p.E95D	AGATGAGGTAAAC	.	71	4	57	0	.	.	T	57272144	G	T	57272144	3	4	7	1	0	0	0	0	1	0	0	0	814	1014	35	3	299	3	APPL1	3	57272144	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	4620648	57272144	140750286	32	976											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	17	7	10	7	0	1	2	1	2	0	0	1	4	1	3	0	3	3	2	0	3	5	0	rs121913279	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA_ENST00000263967	NM_006218	exon21	c.A3140T	p.H1047L	ATGCACATCATGG	.	30	12	12	0	.	0	T	178952085	A	T	178952085	3	4	7	1	0	0	0	0	1	0	0	0	11961	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	121679941	178952085	19070345	33	977											
TTC14	151613	hgsc.bcm.edu	37	chr3	180320910	180320910	+	Splice_Site	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttgttaattttttttttttAgatcattatgcaatcatgcc	9	23	4	5	0	2	1	2	0	0	1	2	1	2	1	1	0	2	2	1	0	4	9	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001042601	exon3	c.287-2A>T	.	TTTTTTAGATCAT	.	75	6	40	0	.	.	T	180320910	A	T	180320910	5	4	7	1	0	0	0	0	0	0	1	0	16743	434	15	5	295	5	TTC14	3	180320910	Splice_Site	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	1368825	180320910	17701520	34	978											
ETV5	2119	broad.mit.edu	37	chr3	185798929	185798929	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggaggggctgtgcagctcccGtttgatcttggttggaggtg	4	12	18	7	1	1	1	0	1	1	0	2	3	2	3	1	6	2	5	1	6	0	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ETV5	NM_004454	exon6	c.C268T	p.R90W	GCTCCCGTTTGAT	.	39	3	22	0	.	106	A	185798929	G	A	185798929	3	1	7	1	0	0	0	0	1	0	0	0	5310	1144	40	1	1296	1	ETV5	3	185798929	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	5478019	185798929	12223501	35	979											
ATP13A3	79572	hgsc.bcm.edu	37	chr3	194167665	194167665	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	actgaacccaccttgtcaaaGcaaacaagattgagctgtcc	14	8	7	12	0	1	3	1	2	0	1	2	3	2	3	3	0	4	2	3	0	4	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024524	exon13	c.C1488T	p.C496C	GTCAAAGCAAACA	.	86	4	22	0	.	.	A	194167665	G	A	194167665	2	1	7	1	0	0	0	0	0	0	0	1	1124	963	34	3		3	ATP13A3	3	194167665	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	8368736	194167665	3854765	36	980											
MUC4	4585	hgsc.bcm.edu	37	chr3	195506579	195506579	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaagTgtcggtgacaggaagagggg	11	7	18	5	1	0	3	0	2	0	1	1	6	0	6	1	6	1	0	1	6	3	1	rs71291866	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.A11872G	p.T3958A	AGGAAGTGTCGGT	.	15	5	12	1	.	0	C	195506579	T	C	195506579	3	2	7	1	0	0	0	0	1	0	0	0	10026	1696	59	4		4	MUC4	3	195506579	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	1338914	195506579	2515851	37	981											
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044539	7044539	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccggctccgactccaGctccccgggttcgggagagg	4	7	13	17	4	0	1	0	0	0	1	6	3	5	1	6	4	1	3	6	4	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_153376	exon1	c.C127A	p.L43M	ACTCCAGCTCCCC	.	19	4	10	0	.	.	T	7044539	G	T	7044539	3	4	7	1	0	0	0	0	1	0	0	0	2894	962	34	3	1544	3	CCDC96	4	7044539	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		7044539	184109737	38	982											
YTHDC1	91746	hgsc.bcm.edu	37	chr4	69179995	69179995	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttctccggccactgacaacaGcttgtgtgcgacgaaggaaa	11	8	11	11	3	1	1	0	1	1	0	2	4	1	2	2	2	3	1	2	2	3	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	YTHDC1,caecum,carcinoma,0,1	YTHDC1	NM_001031732	exon17	c.C2006A	p.A669D	ACAACAGCTTGTG	.	30	2	13	0	.	0	T	69179995	G	T	69179995	3	4	7	1	0	0	0	0	1	0	0	0	17556	971	34	3	181	3	YTHDC1	4	69179995	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	62135456	69179995	121974281	39	983											
POU4F2	5458	hgsc.bcm.edu	37	chr4	147560457	147560457	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctcgagcaacgctggtggTggcggcggcggcggcggcgg	4	4	22	11	8	0	0	0	0	0	0	1	1	0	0	0	9	3	3	0	9	1	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004575	exon1	c.T165C	p.G55G	TGGTGGTGGCGGC	.	16	0	6	0	.	.	C	147560457	T	C	147560457	2	2	7	1	0	0	0	0	0	0	0	1	12325	1683	59	4		4	POU4F2	4	147560457	Silent	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	78380462	147560457	43593819	40	984											
KIAA0922	23240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	154525556	154525556	+	Missense_Mutation	SNP	T	T	G																															tcagtaccaccagccagactTgccagaaatttccaggaaaa																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001131007	exon25	c.T3392G	p.L1131W	CAGACTTGCCAGA	.	60	6	42	0	.	.	G	154525556	T	G	154525556	3	3	7	1	0	0	0	0	1	0	0	0	8243	1821	63	4	3490	4	KIAA0922	4	154525556	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	6965099	154525556	36628720	41	985	4	2									
KIAA0922	23240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	154525558	154525559	+	Missense_Mutation	DNP	CC	CC	AA																															agtaccaccagccagacttgCcagaaatttccaggaaaaat																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001131007	exon25	c.C3395A	p.P1132K	ACTTGCCAGAAAT	.	58	6	39	0	.	.	AA	154525559	CC	AA	154525558	3	1	7	1	0	0	0	0	1	0	0	0	8243	739	26	3	3492	3	KIAA0922	4	154525558	Missense_Mutation	DNP	CC	TCGA-4G-AAZT-01A-11D-A417-09	2	154525558	36628718	42	986	4	2									
NPY1R	4886	hgsc.bcm.edu	37	chr4	164246817	164246817	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgctaccacaatggagagcaGcatgatattgattcttttgg	11	13	10	7	0	1	3	0	2	1	1	1	4	1	3	1	2	4	3	1	2	3	6	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	NPY1R,NS,carcinoma,0,1	NPY1R	NM_000909	exon3	c.C793T	p.L265L	AGAGCAGCATGAT	.	28	2	17	0	.	0	A	164246817	G	A	164246817	2	1	7	1	0	0	0	0	0	0	0	1	10656	962	34	3		3	NPY1R	4	164246817	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	9721259	164246817	26907459	43	987											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	89999578	89999578	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcaaaatctagaactcaattTtgctaactttagcggacaac	15	11	6	9	1	2	1	1	0	1	1	2	2	2	2	0	1	5	2	0	1	8	6	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_032119	exon35	c.T8252A	p.F2751Y	TCAATTTTGCTAA	.	124	6	74	0	.	.	A	89999578	T	A	89999578	3	1	7	1	0	0	0	0	1	0	0	0	6762	1841	64	5	8390	5	GPR98	5	89999578	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09		89999578	90915682	44	988											
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	95099223	95099223	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttacaggtgcttttcagTgggaagaattggaagaagat	12	13	13	3	0	1	3	1	0	0	3	1	5	1	5	0	3	2	2	0	3	5	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_014899	exon7	c.T1060G	p.W354G	TTTCAGTGGGAAG	.	128	7	46	0	.	.	G	95099223	T	G	95099223	3	3	7	1	0	0	0	0	1	0	0	0	13385	1696	59	4	1086	4	RHOBTB3	5	95099223	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	5099645	95099223	85816037	45	989											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	114506912	114506912	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcggtagcctcgtctccaaTccggcatctaaataaggagt	11	9	10	11	3	2	0	0	0	2	0	5	1	3	1	3	3	2	2	3	3	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001017397	exon2	c.A71G	p.D24G	CTCCAATCCGGCA	.	38	4	30	0	.	.	C	114506912	T	C	114506912	3	2	7	1	0	0	0	0	1	0	0	0	16571	1435	50	4	2275	4	TRIM36	5	114506912	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	19407689	114506912	66408348	46	990											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	127641262	127641262	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cacattcacagcggtaactaCcaggactattgatgcagtct	12	10	8	11	1	2	1	1	1	1	0	2	2	2	2	1	2	4	2	1	2	3	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001999	exon44	c.G5615T	p.G1872V	TAACTACCAGGAC	.	45	22	23	0	.	.	A	127641262	C	A	127641262	3	1	7	1	0	0	0	0	1	0	0	0	5736	507	18	3	3211	3	FBN2	5	127641262	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	13134350	127641262	53273998	47	991											
SLC22A4	6583	hgsc.bcm.edu	37	chr5	131630429	131630429	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatggtatgtcagtcgtGttcctggcggggaccccgga	6	11	14	10	3	2	0	2	0	0	0	4	2	3	2	3	5	0	2	3	5	2	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_003059	exon1	c.G120T	p.V40V	AGTCGTGTTCCTG	.	47	4	19	0	.	.	T	131630429	G	T	131630429	2	4	7	1	0	0	0	0	0	0	0	1	14511	1364	48	3		3	SLC22A4	5	131630429	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	3989167	131630429	49284831	48	992											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140188641	140188641	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcgcgcatcccgttccgCgtggggctgtacactggcga	4	7	16	14	7	0	0	0	0	0	0	2	1	2	0	2	4	1	4	2	4	1	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PCDHA4_ENST00000530339,NS,carcinoma,0,4	PCDHA4_ENST00000530339	NM_031500	exon1	c.C1869T	p.R623R	GTTCCGCGTGGGG	.	80	8	44	0	.	0	T	140188641	C	T	140188641	2	4	7	1	0	0	0	0	0	0	0	1	11573	755	27	1		1	PCDHA4	5	140188641	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	8558212	140188641	40726619	49	993											
RNF14	9604	hgsc.bcm.edu	37	chr5	141353306	141353306	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aatttcaagatatttgtgagCggttagttaataatttctta	13	18	7	3	1	2	2	1	1	1	1	2	2	2	2	0	1	1	2	0	1	7	8	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	RNF14,NS,carcinoma,0,1	RNF14	NM_001201365	exon3	c.C153T	p.S51S	TGTGAGCGGTTAG	.	95	4	48	0	.	0	T	141353306	C	T	141353306	2	4	7	1	0	0	0	0	0	0	0	1	13495	782	27	1		1	RNF14	5	141353306	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	1164665	141353306	39561954	50	994											
MUC21	394263	bcgsc.ca	37	chr6	30954572	30954572	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cagcacaacctccagtggggCcagcacagccaccaactctg	11	4	9	17	0	1	0	0	0	1	0	2	0	2	0	5	2	5	2	5	2	2	0	rs146037191	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MUC21,NS,malignant_melanoma,0,2	MUC21	NM_001010909	exon2	c.C620T	p.A207V	GTGGGGCCAGCAC	.	99	8	72	2	C|0.998;T|0.002	98	T	30954572	T	T	30954572	3	4	7	1	0	0	0	0	1	0	0	0	10025	739	26	3	626	3	MUC21	6	30954572	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		30954572	140160495	51	995											
GCM1	8521	hgsc.bcm.edu	37	chr6	52993290	52993290	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggctgcaggtggctccaatGgaagctgctggtaaaagggt	9	9	16	7	0	0	0	0	0	0	0	1	1	1	1	1	6	3	6	1	6	4	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GCM1,rectum,carcinoma,0,1	GCM1	NM_003643	exon6	c.C1025A	p.P342Q	TCCAATGGAAGCT	.	56	3	24	0	.	0	T	52993290	G	T	52993290	3	4	7	1	0	0	0	0	1	0	0	0	6337	1348	47	3	289	3	GCM1	6	52993290	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	22038718	52993290	118121777	52	996											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	79679836	79679836	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcaagtttaaggcagcaaaGggtaggtaatcccacttcat	14	9	10	8	0	1	0	1	0	0	0	2	0	2	0	1	3	2	6	1	3	5	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_017934	exon26	c.C3052G	p.L1018V	AGCAAAGGGTAGG	.	67	47	43	0	.	.	C	79679836	G	C	79679836	3	2	7	1	0	0	0	0	1	0	0	0	11890	1000	35	5	2473	5	PHIP	6	79679836	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	26686546	79679836	91435231	53	997											
ME1	4199	hgsc.bcm.edu	37	chr6	84061833	84061833	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aactgaagcaatatgccctcGatcgtggatagtaataaaga	16	9	9	7	2	0	2	0	1	0	1	2	4	0	3	1	1	3	2	1	1	8	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ME1,mucosal,malignant_melanoma,0,1	ME1	NM_002395	exon4	c.C388A	p.R130R	GCCCTCGATCGTG	.	25	2	12	0	.	0	T	84061833	G	T	84061833	2	4	7	1	0	0	0	0	0	0	0	1	9467	1066	37	2		2	ME1	6	84061833	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	4381997	84061833	87053234	54	998											
RPS6KA2	6196	hgsc.bcm.edu	37	chr6	166918040	166918040	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatccccaggctgtggagatGgtctaaagccaaggccagct	10	7	13	11	0	1	1	0	0	1	1	2	3	2	1	4	4	2	2	4	4	3	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	RPS6KA2_ENST00000503859,NS,carcinoma,+1,2	RPS6KA2_ENST00000503859	NM_001006932	exon7	c.C544A	p.H182N	GGAGATGGTCTAA	.	38	2	27	0	.	+1	T	166918040	G	T	166918040	3	4	7	1	0	0	0	0	1	0	0	0	13703	1348	47	3	1745	3	RPS6KA2	6	166918040	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	82856207	166918040	4197027	55	999											
ACTB	60	hgsc.bcm.edu	37	chr7	5567663	5567663	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tcattgtgctgggtgccaggGcagtgatctccttctgcatc	5	13	12	11	0	3	1	1	1	2	0	5	1	3	1	2	2	3	3	2	2	0	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001101	exon5	c.C956T	p.A319V	GCCAGGGCAGTGA	.	53	4	37	0	.	.	A	5567663	G	A	5567663	3	1	7	1	0	0	0	0	1	0	0	0	193	1203	42	3	179	3	ACTB	7	5567663	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		5567663	153571000	56	1000											
GARS	2617	bcgsc.ca	37	chr7	30662040	30662040	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttgccatttgtgatgagtgCtacattacagaaatggagat	12	13	10	6	0	0	4	0	2	0	2	0	5	0	4	1	1	4	1	1	1	3	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	GARS	NM_002047	exon12	c.C1575T	p.C525C	TGAGTGCTACATT	.	58	4	41	0	.	52	T	30662040	T	T	30662040	2	4	7	1	0	0	0	0	0	0	0	1	6282	805	28	3		3	GARS	7	30662040	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	25094377	30662040	128476623	57	1001											
ABCB1	5243	bcgsc.ca	37	chr7	87229482	87229482	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttctttgctcctccattgcGgtccccttcaagatccattc	5	15	5	16	1	2	1	1	0	1	1	7	1	6	1	5	1	2	1	5	1	1	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ABCB1	NM_000927	exon3	c.C19A	p.R7S	CATTGCGGTCCCC	.	54	4	28	0	.	263	T	87229482	T	T	87229482	3	4	7	1	0	0	0	0	1	0	0	0	40	1116	39	2	3931	2	ABCB1	7	87229482	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	56567442	87229482	71909181	58	1002											
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100014767	100014767	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gggtagatactacgggctggGcacaagaagtctctgcaaaa	13	7	13	8	1	1	2	0	0	1	2	2	2	1	2	0	3	3	4	0	3	7	3	rs370621347		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ZCWPW1,NS,carcinoma,0,1	ZCWPW1	NM_001258008	exon6	c.C401T	p.A134V	GGCTGGGCACAAG	.	67	4	35	0	.	0	A	100014767	G	A	100014767	3	1	7	1	0	0	0	0	1	0	0	0	17655	1203	42	3	1597	3	ZCWPW1	7	100014767	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	12785285	100014767	59123896	59	1003											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	131888134	131888134	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tgcccattccacacgactgtCaactccacgggcaggttgtt	8	10	9	14	2	1	0	1	0	0	0	3	1	3	0	3	2	2	3	3	2	1	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020911	exon11	c.G2343C	p.L781F	GACTGTCAACTCC	.	48	11	32	0	.	.	G	131888134	C	G	131888134	3	3	7	1	0	0	0	0	1	0	0	0	12170	825	29	5	3429	5	PLXNA4	7	131888134	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	31873367	131888134	27250529	60	1004											
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	36793039	36793039	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacttgtcttacaggtttgtGatcacccggccagccaatga	9	11	10	11	1	2	2	1	2	1	0	2	3	2	2	3	2	2	1	3	2	2	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001031836	exon27	c.G3051T	p.V1017V	GTTTGTGATCACC	.	57	9	24	0	.	.	T	36793039	G	T	36793039	2	4	7	1	0	0	0	0	0	0	0	1	8137	1277	45	3		3	KCNU1	8	36793039	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		36793039	109570983	61	1005											
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	39114753	39114753	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agactgaaaacacctggcttCtaggtttcctcattgctctt	9	14	7	11	0	3	2	1	1	2	1	4	2	4	2	2	2	2	3	2	2	3	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_145004	exon19	c.C2053A	p.L685I	TGGCTTCTAGGTT	.	98	10	38	0	.	.	A	39114753	C	A	39114753	3	1	7	1	0	0	0	0	1	0	0	0	248	912	32	3	2127	3	ADAM32	8	39114753	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	2321714	39114753	107249269	62	1006											
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu	37	chr8	73849914	73849914	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcactgaggtttcagCgccttgtcagggaccttcca	6	10	13	12	1	2	1	2	1	0	0	3	2	3	2	3	3	1	3	3	3	0	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	KCNB2,NS,carcinoma,0,1	KCNB2	NM_004770	exon3	c.C2324T	p.A775V	TTTCAGCGCCTTG	.	28	3	9	0	.	0	T	73849914	C	T	73849914	3	4	7	1	0	0	0	0	1	0	0	0	8057	768	27	1	2330	1	KCNB2	8	73849914	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	34735161	73849914	72514108	63	1007											
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	92346590	92346590	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attgcttttatccttgctgaGcattgtggtccttgttcttg	4	20	9	8	0	1	1	0	1	1	0	3	1	3	1	2	1	3	4	2	1	1	8	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_134266	exon6	c.G710A	p.S237N	TGCTGAGCATTGT	.	158	68	62	0	.	.	A	92346590	G	A	92346590	3	1	7	1	0	0	0	0	1	0	0	0	14577	971	34	3	728	3	SLC26A7	8	92346590	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	18496676	92346590	54017432	64	1008											
MPDZ	8777	hgsc.bcm.edu	37	chr9	13176150	13176150	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attacctttccagctgaatcGggtagcacagaaggaagttc	12	10	10	9	1	0	2	0	1	0	1	3	3	1	3	2	2	3	4	2	2	5	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MPDZ_ENST00000541718,NS,carcinoma,0,2	MPDZ_ENST00000541718	NM_003829	exon20	c.C2916A	p.P972P	TGAATCGGGTAGC	.	59	3	34	0	.	0	T	13176150	G	T	13176150	2	4	7	1	0	0	0	0	0	0	0	1	9771	1103	39	2		2	MPDZ	9	13176150	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		13176150	128037281	65	1009											
VCP	7415	hgsc.bcm.edu	37	chr9	35060888	35060888	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acctctaccacggtttcccgCagtgctgatgggttactctg	6	12	10	13	2	2	1	0	1	2	0	3	1	3	1	3	2	3	4	3	2	2	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007126	exon12	c.G1392A	p.L464L	TTCCCGCAGTGCT	.	85	3	45	0	.	.	T	35060888	C	T	35060888	2	4	7	1	0	0	0	0	0	0	0	1	17200	697	25	3		3	VCP	9	35060888	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	21884738	35060888	106152543	66	1010											
GCNT1	2650	hgsc.bcm.edu	37	chr9	79117954	79117954	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgataaatctttgtggtatGgattttcccattaaaaccaa	13	16	6	6	0	1	1	0	1	1	0	2	2	2	2	2	2	1	1	2	2	6	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GCNT1,NS,malignant_melanoma,0,2	GCNT1	NM_001490	exon4	c.G657T	p.M219I	TGGTATGGATTTT	.	43	2	37	0	.	0	T	79117954	G	T	79117954	3	4	7	1	0	0	0	0	1	0	0	0	6340	1348	47	3	659	3	GCNT1	9	79117954	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	44057066	79117954	62095477	67	1011											
OR13F1	138805	hgsc.bcm.edu	37	chr9	107267255	107267255	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tggaaggtcgaagtaaagccTtttcaacgtgcacagcccac	12	8	10	11	2	1	0	1	0	0	0	2	2	1	1	2	2	4	2	2	2	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001004485	exon1	c.T712C	p.F238L	AAAGCCTTTTCAA	.	52	4	32	0	.	.	C	107267255	T	C	107267255	3	2	7	1	0	0	0	0	1	0	0	0	10989	1609	56	4	714	4	OR13F1	9	107267255	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	28149301	107267255	33946176	68	1012											
COL5A1	1289	hgsc.bcm.edu	37	chr9	137582891	137582891	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tacagagtcaccaaagacgcGcagctcagcgcacccaccaa	14	3	8	16	3	2	2	2	0	0	2	2	2	2	2	3	0	3	3	3	0	3	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	COL5A1,NS,carcinoma,0,1	COL5A1	NM_000093	exon2	c.G243A	p.A81A	AGACGCGCAGCTC	.	41	3	22	0	.	0	A	137582891	G	A	137582891	2	1	7	1	0	0	0	0	0	0	0	1	3719	1074	38	1		1	COL5A1	9	137582891	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	30315636	137582891	3630540	69	1013											
LCN12	286256	hgsc.bcm.edu	37	chr9	139846784	139846784	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccagcagctgccaggatgaGgctgctgtgtggcctgtggc	5	8	16	12	0	0	1	0	1	0	0	0	2	0	2	3	4	4	4	3	4	0	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_178536	exon1	c.G5T	p.R2M	GGATGAGGCTGCT	.	65	3	55	0	.	.	T	139846784	G	T	139846784	3	4	7	1	0	0	0	0	1	0	0	0	8721	1000	35	3	7	3	LCN12	9	139846784	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	2263893	139846784	1366647	70	1014											
ITGA8	8516	ucsc.edu	37	chr10	15649688	15649688	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atacttactcgaaggtaaacGatgaaatcctggcactggtg	13	10	10	8	2	0	1	0	1	0	0	2	3	1	1	1	3	3	2	1	3	6	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ITGA8	NM_003638	exon17	c.C1752T	p.I584I	GTAAACGATGAAA	.	37	4	17	0	.	230	A	15649688	G	A	15649688	2	1	7	1	0	0	0	0	0	0	0	1	7926	1048	37	1		1	ITGA8	10	15649688	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		15649688	119885059	71	1015											
ADK	132	hgsc.bcm.edu;bcgsc.ca	37	chr10	76285055	76285055	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccagagtcagtattaaaggtGgctcaccatgcttctgaaaa	13	10	9	9	0	3	2	2	1	1	1	3	2	3	2	2	2	1	3	2	2	5	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006721	exon7	c.G597T	p.V199V	AAAGGTGGCTCAC	.	49	4	26	0	.	.	T	76285055	G	T	76285055	2	4	7	1	0	0	0	0	0	0	0	1	319	1335	47	3		3	ADK	10	76285055	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	60635367	76285055	59249692	72	1016											
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	134006179	134006179	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagacaaatcggagaaaaccTcatcgtccctgggggcatca	13	6	10	12	2	2	2	2	0	0	2	5	3	3	2	2	3	1	1	2	3	3	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006426	exon3	c.T146C	p.L49P	AAAACCTCATCGT	.	45	5	37	0	.	.	C	134006179	T	C	134006179	3	2	7	1	0	0	0	0	1	0	0	0	4775	1551	54	4	156	4	DPYSL4	10	134006179	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	57721124	134006179	1528568	73	1017											
TSG101	7251	hgsc.bcm.edu	37	chr11	18536390	18536390	+	Splice_Site	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaatattgtatgtattaccTgaaaaagaaatagaaacttc	18	12	7	4	0	0	3	0	1	0	2	1	4	0	4	1	1	2	2	1	1	10	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TSG101,NS,carcinoma,0,1	TSG101	NM_006292	exon5	c.194-2A>T	.	ATTACCTGAAAAA	.	84	4	45	0	.	0	A	18536390	T	A	18536390	5	1	7	1	0	0	0	0	0	0	1	0	16677	1594	55	5	1008	5	TSG101	11	18536390	Splice_Site	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09		18536390	116470126	74	1018											
AMBRA1	55626	hgsc.bcm.edu	37	chr11	46564499	46564499	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctggtcctgctgcgttgaCgaggcctgctccgggggatg	3	9	16	13	3	0	1	0	1	0	0	2	3	2	2	4	4	3	3	4	4	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	AMBRA1_ENST00000458649,colon,carcinoma,0,2	AMBRA1_ENST00000458649	NM_001267783	exon8	c.G798A	p.S266S	CGTTGACGAGGCC	.	32	2	24	0	.	0	T	46564499	C	T	46564499	2	4	7	1	0	0	0	0	0	0	0	1	561	523	19	1		1	AMBRA1	11	46564499	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	28028109	46564499	88442017	75	1019											
ARFGAP2	84364	broad.mit.edu	37	chr11	47188426	47188426	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tccggctctccacttccctcCggtttgtggctctgagggga	3	12	12	14	2	2	1	0	1	2	0	6	2	5	2	4	5	0	3	4	5	0	2	rs200794218		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ARFGAP2	NM_032389	exon13	c.G1217A	p.R406Q	TCCCTCCGGTTTG	.	28	3	13	0	.	43	T	47188426	C	T	47188426	3	4	7	1	0	0	0	0	1	0	0	0	847	652	23	1	364	1	ARFGAP2	11	47188426	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	623927	47188426	87818090	76	1020											
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu	37	chr11	47754203	47754203	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccattaagagccccttccCgccagtctgcaattcgagtc	8	11	7	15	2	1	1	0	0	1	1	5	2	3	1	5	0	2	1	5	0	2	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015308	exon11	c.G1706A	p.R569Q	CCTTCCCGCCAGT	.	98	4	69	0	.	.	T	47754203	C	T	47754203	3	4	7	1	0	0	0	0	1	0	0	0	6000	652	23	1	1375	1	FNBP4	11	47754203	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	565777	47754203	87252313	77	1021											
FAM111B	374393	broad.mit.edu	37	chr11	58893430	58893430	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tatgataccaccagtaatgtAtactgtatgtttacccaaag	14	13	6	8	0	0	1	0	1	0	0	0	1	0	1	3	0	3	4	3	0	8	8	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	FAM111B	NM_198947	exon4	c.A1860G	p.V620V	TAATGTATACTGT	.	75	3	43	1	.	84	G	58893430	A	G	58893430	2	3	7	1	0	0	0	0	0	0	0	1	5431	436	16	4		4	FAM111B	11	58893430	Silent	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	11139227	58893430	76113086	78	1022											
FTH1	2495	hgsc.bcm.edu	37	chr11	61734852	61734852	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gttgatggcggcctctgagtCctggtggtagttctggcgca	4	12	16	9	2	2	2	0	2	2	0	3	2	3	2	2	5	0	4	2	5	1	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	FTH1,NS,malignant_melanoma,0,1	FTH1	NM_002032	exon1	c.G46T	p.D16Y	CTGAGTCCTGGTG	.	43	2	22	0	.	0	A	61734852	C	A	61734852	3	1	7	1	0	0	0	0	1	0	0	0	6117	855	30	3	521	3	FTH1	11	61734852	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	2841422	61734852	73271664	79	1023											
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	65046272	65046272	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacctccttcggcttagcacAgggagtatcttggtctggga	7	12	12	10	1	2	0	0	0	2	0	4	2	3	2	2	4	2	3	2	4	3	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002689	exon6	c.A533G	p.Q178R	TAGCACAGGGAGT	.	56	4	50	0	.	.	G	65046272	A	G	65046272	3	3	7	1	0	0	0	0	1	0	0	0	12236	188	7	4	555	4	POLA2	11	65046272	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	3311420	65046272	69960244	80	1024											
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	119050623	119050623	+	Silent	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atgttcatgggggggcttctCtctgcccacaaccgagctgt	6	11	12	12	1	3	0	1	0	2	0	4	1	3	0	2	3	3	3	2	3	1	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024618	exon7	c.C1893G	p.L631L	GCTTCTCTCTGCC	.	19	7	17	0	.	.	G	119050623	C	G	119050623	2	3	7	1	0	0	0	0	0	0	0	1	10532	900	32	5		5	NLRX1	11	119050623	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	54004351	119050623	15955893	81	1025											
SRPR	6734	hgsc.bcm.edu	37	chr11	126134923	126134923	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttttcaaacaactgcaccaTggtgcggccaccatgcttct	9	11	7	14	1	2	0	1	0	1	0	2	0	2	0	3	2	5	2	3	2	2	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon11	c.A1456G	p.M486V	GCACCATGGTGCG	.	43	2	36	0	.	0	C	126134923	T	C	126134923	3	2	7	1	0	0	0	0	1	0	0	0	15218	1464	51	4	476	4	SRPR	11	126134923	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	7084300	126134923	8871593	82	1026											
DCP1B	196513	hgsc.bcm.edu	37	chr12	2062323	2062323	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcctaattggaagcttctcTtgctgctgctgctgctgctg	4	15	11	11	0	1	0	0	0	1	0	2	1	1	1	1	1	8	7	1	1	2	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	35	2	15	0	.	63	C	2062323	T	C	2062323	2	2	7	1	0	0	0	0	0	0	0	1	4322	1606	56	4		4	DCP1B	12	2062323	Silent	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09		2062323	131789572	83	1027											
MRPS35	60488	hgsc.bcm.edu	37	chr12	27863845	27863845	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggactctgcgtgcattctcCactgccgtctactcggccac	6	10	9	16	3	3	0	0	0	3	0	5	1	3	1	3	2	4	1	3	2	1	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MRPS35,NS,neuroblastoma,0,1	MRPS35	NM_001190864	exon1	c.C69T	p.S23S	ATTCTCCACTGCC	.	73	3	30	0	.	0	T	27863845	C	T	27863845	2	4	7	1	0	0	0	0	0	0	0	1	9893	581	21	3		3	MRPS35	12	27863845	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	25801522	27863845	105988050	84	1028											
YAF2	10138	hgsc.bcm.edu;bcgsc.ca	37	chr12	42555512	42555512	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttctttgactgtgtaggagGcacaaactgctgagtaacct	10	13	10	8	0	1	2	0	2	1	0	1	3	1	3	1	2	3	4	1	2	3	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001190979	exon4	c.C280T	p.P94S	TAGGAGGCACAAA	.	85	5	32	0	.	.	A	42555512	G	A	42555512	3	1	7	1	0	0	0	0	1	0	0	0	17525	1203	42	3	342	3	YAF2	12	42555512	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	14691667	42555512	91296383	85	1029											
NCKAP1L	3071	hgsc.bcm.edu	37	chr12	54917650	54917650	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgacagaactggcactgaCaatgaatcatgtatacagtt	14	11	8	8	0	1	4	1	3	0	1	1	4	1	4	0	1	2	3	0	1	5	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_005337	exon20	c.C2066A	p.T689K	CACTGACAATGAA	.	64	4	26	0	.	.	A	54917650	C	A	54917650	3	1	7	1	0	0	0	0	1	0	0	0	10269	478	17	3	2144	3	NCKAP1L	12	54917650	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	12362138	54917650	78934245	86	1030											
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	chr12	57586977	57586977	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agcggtgaattcctcttgccGagcacaagatgagtttgagt	10	11	12	8	2	1	4	0	3	1	1	2	5	2	4	2	1	3	2	2	1	2	3	rs143045870		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002332	exon46	c.G7574A	p.R2525Q	CTTGCCGAGCACA	.	24	11	13	0	0.000	.	A	57586977	G	A	57586977	3	1	7	1	0	0	0	0	1	0	0	0	8996	1058	37	1	7756	1	LRP1	12	57586977	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	2669327	57586977	76264918	87	1031											
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	77208948	77208948	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtagatatgatggatcagaAtggaatgacgcctttaatgt	13	13	11	4	1	1	4	1	2	0	2	1	6	1	6	1	2	0	1	1	2	5	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015336	exon6	c.A566G	p.N189S	ATCAGAATGGAAT	.	109	18	44	0	.	.	G	77208948	A	G	77208948	3	3	7	1	0	0	0	0	1	0	0	0	17665	101	4	4	588	4	ZDHHC17	12	77208948	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	19621971	77208948	56642947	88	1032											
HAL	3034	hgsc.bcm.edu	37	chr12	96379885	96379885	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atctgagtccaagagtgaccGaaaccgaaaagcaacttcaa	17	6	8	10	2	2	3	1	2	1	1	3	5	3	3	3	0	3	1	3	0	6	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	HAL,NS,malignant_melanoma,0,2	HAL	NM_001258334	exon13	c.C1105T	p.R369W	GTGACCGAAACCG	.	58	4	35	0	.	0	A	96379885	G	A	96379885	3	1	7	1	0	0	0	0	1	0	0	0	6988	1057	37	1	904	1	HAL	12	96379885	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	19170937	96379885	37472010	89	1033											
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	104126866	104126866	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caccgaccaagccctccatgCcctacctgctgaacaacagg	11	5	7	18	1	0	1	0	1	0	0	1	2	1	1	6	1	6	1	6	1	4	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_017564	exon51	c.C5366T	p.A1789V	TCCATGCCCTACC	.	15	8	14	0	.	.	T	104126866	C	T	104126866	3	4	7	1	0	0	0	0	1	0	0	0	15294	739	26	3	5568	3	STAB2	12	104126866	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	7746981	104126866	29725029	90	1034											
POLR3B	55703	hgsc.bcm.edu	37	chr12	106853126	106853126	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatgtaccacagcaaccacaGtacaaagatgtacccataac	18	6	5	12	0	0	1	0	0	0	1	0	1	0	1	3	0	6	4	3	0	7	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_018082	exon22	c.G2550T	p.Q850H	ACCACAGTACAAA	.	88	4	31	0	.	.	T	106853126	G	T	106853126	3	4	7	1	0	0	0	0	1	0	0	0	12277	1020	36	3	2636	3	POLR3B	12	106853126	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	2726260	106853126	26998769	91	1035											
UBE3B	89910	hgsc.bcm.edu	37	chr12	109927743	109927743	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaagtcttcgaccagcGatgaaccacatttgtgcaaa	13	9	10	9	2	1	2	0	2	1	0	2	4	1	2	2	1	3	1	2	1	3	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	UBE3B,bladder,carcinoma,+1,1	UBE3B	NM_001270451	exon8	c.G564T	p.A188A	ACCAGCGATGAAC	.	46	2	19	0	.	+1	T	109927743	G	T	109927743	2	4	7	1	0	0	0	0	0	0	0	1	16941	1045	37	2		2	UBE3B	12	109927743	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	3074617	109927743	23924152	92	1036											
ORAI1	84876	broad.mit.edu	37	chr12	122079347	122079347	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catcaccccgggccaggcagCtgccatcgcctcgaccacca	8	4	9	20	3	1	0	1	0	0	0	3	1	1	0	7	2	2	2	7	2	0	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ORAI1	NM_032790	exon2	c.C710T	p.A237V	AGGCAGCTGCCAT	.	47	3	42	0	.	66	T	122079347	C	T	122079347	3	4	7	1	0	0	0	0	1	0	0	0	11304	797	28	3	716	3	ORAI1	12	122079347	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	12151604	122079347	11772548	93	1037											
DAOA	267012	hgsc.bcm.edu;ucsc.edu	37	chr13	106142521	106142521	+	RNA	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tctgacggactctgtgtctgGgacccagctgataacacgtg	8	10	12	11	2	3	2	0	2	3	0	3	4	3	4	1	2	2	1	1	2	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TGTCTGGGACCCA	.	24	12	10	0	.	.	C	106142521	G	C	106142521	1	2	7	0	1	0	0	0	0	0	0	0	4256	1247	43	5		5	DAOA	13	106142521	RNA	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		106142521	9027357	94	1038											
KHNYN	23351	broad.mit.edu	37	chr14	24900976	24900976	+	Frame_Shift_Del	DEL	C	C	-																															cttctctgccctgctgcagtCcccgggggatgcccatagag																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	KHNYN	NM_015299	exon3	c.509delC	p.S170fs	TGCAGTCCCCGGG	.	6	2	17	0	.	46	-	24900976	C	-	24900976	7	5	7	1	0	1	0	1	0	0	0	0	8192	855	30	0	515	0	KHNYN	14	24900976	Frame_Shift_Del	DEL	C	TCGA-4G-AAZT-01A-11D-A417-09		24900976	82448564	95	1039											
MIA2	117153	bcgsc.ca	37	chr14	39703322	39703322	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cggttgcttgttttagcatgGcaaaatttggcgttcacaga	9	14	11	7	2	1	1	1	0	0	1	1	1	1	1	0	3	2	6	0	3	3	6	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	MIA2	NM_054024	exon1	c.G4A	p.A2T	AGCATGGCAAAAT	.	52	4	57	0	.	82	A	39703322	A	A	39703322	3	1	7	1	0	0	0	0	1	0	0	0	9613	1203	42	3	6	3	MIA2	14	39703322	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	14802346	39703322	67646218	96	1040											
GANC	2595	hgsc.bcm.edu	37	chr15	42644326	42644326	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgccactgactgggaggtcCgcatcatatgacaaagaact	12	9	10	10	1	1	3	1	2	0	1	2	4	2	4	2	2	2	1	2	2	3	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GANC,colon,carcinoma,0,1	GANC	NM_198141	exon24	c.C2734T	p.R912C	GAGGTCCGCATCA	.	19	2	19	0	.	0	T	42644326	C	T	42644326	3	4	7	1	0	0	0	0	1	0	0	0	6274	652	23	1	2828	1	GANC	15	42644326	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		42644326	59887066	97	1041											
C2CD4A	145741	ucsc.edu;bcgsc.ca	37	chr15	62359940	62359940	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgcaaatgtgctcactcCggaccgcatccctgagttct	7	10	10	14	3	2	1	1	1	1	0	4	2	4	2	3	1	2	4	3	1	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	C2CD4A	NM_207322	exon2	c.C128T	p.P43L	TCACTCCGGACCG	.	42	4	28	0	.	3	T	62359940	C	T	62359940	3	4	7	1	0	0	0	0	1	0	0	0	2169	652	23	1	130	1	C2CD4A	15	62359940	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	19715614	62359940	40171452	98	1042											
SLC24A1	9187	hgsc.bcm.edu	37	chr15	65918176	65918176	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctcattgcctggtgggagagCctgctgctgctgctggccta	4	11	14	12	0	1	1	1	0	0	1	1	2	1	1	3	3	6	4	3	3	1	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.,1	.	NM_004727	exon2	c.C1758T	p.S586S	GGAGAGCCTGCTG	.	33	3	23	0	.	58	T	65918176	C	T	65918176	2	4	7	1	0	0	0	0	0	0	0	1	14520	738	26	3		3	SLC24A1	15	65918176	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	3558236	65918176	36613216	99	1043											
ISLR2	57611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74425467	74425467	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacctgcgcaacctgagcgcGctgcagctgctcaaaatgaa	11	6	11	13	3	1	2	1	2	0	0	1	3	1	2	2	0	6	5	2	0	4	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ISLR2,NS,carcinoma,0,1	ISLR2	NM_001130138	exon4	c.G372A	p.A124A	GAGCGCGCTGCAG	.	15	4	17	0	.	0	A	74425467	G	A	74425467	2	1	7	1	0	0	0	0	0	0	0	1	7903	1074	38	1		1	ISLR2	15	74425467	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	8507291	74425467	28105925	100	1044											
IREB2	3658	hgsc.bcm.edu	37	chr15	78765723	78765723	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gttgttcttggtattacaaaGgtaagttaaagttgtggtag	11	16	12	2	0	1	0	0	0	1	0	1	0	1	0	0	3	1	7	0	3	7	9	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004136	exon8	c.G1023T	p.K341N	TACAAAGGTAAGT	.	84	3	60	0	.	.	T	78765723	G	T	78765723	3	4	7	1	0	0	0	0	1	0	0	0	7870	1014	35	3	1053	3	IREB2	15	78765723	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	4340256	78765723	23765669	101	1045											
ASPHD1	253982	hgsc.bcm.edu	37	chr16	29912808	29912808	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aggcgggcagctcagggtggCccaggccctgggagagggcc	6	3	20	12	1	1	1	1	0	0	1	1	2	1	1	3	7	1	2	3	7	0	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_181718	exon1	c.C516T	p.G172G	GGGTGGCCCAGGC	.	117	7	36	0	.	.	T	29912808	C	T	29912808	2	4	7	1	0	0	0	0	0	0	0	1	1053	726	26	3		3	ASPHD1	16	29912808	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		29912808	60441945	102	1046											
BBS2	583	hgsc.bcm.edu	37	chr16	56535283	56535283	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	accattagaagtggaaatgcGtaattctgtatgagcagttt	13	13	10	5	1	1	2	0	1	1	1	1	3	1	3	1	1	2	4	1	1	5	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	BBS2,NS,carcinoma,+1,1	BBS2	NM_031885	exon10	c.C1207T	p.R403C	AAATGCGTAATTC	.	73	3	30	0	.	+1	A	56535283	G	A	56535283	3	1	7	1	0	0	0	0	1	0	0	0	1336	1145	40	1	990	1	BBS2	16	56535283	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	26622475	56535283	33819470	103	1047											
FAM65A	79567	hgsc.bcm.edu	37	chr16	67572725	67572725	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acggcgctgaagcggggcctGacgtgagcagctcctctgtt	6	8	15	12	4	1	3	0	3	1	0	2	3	2	3	2	3	3	4	2	3	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001193523	exon3	c.G315T	p.L105L	GGGCCTGACGTGA	.	97	4	57	0	.	.	T	67572725	G	T	67572725	2	4	7	1	0	0	0	0	0	0	0	1	5634	1277	45	3		3	FAM65A	16	67572725	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	11037442	67572725	22782028	104	1048											
ZFP1	162239	hgsc.bcm.edu	37	chr16	75203971	75203971	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagaagattcacacgggggaGaaacgctatgagtgcagtga	14	6	14	7	2	1	5	1	2	0	3	1	6	1	5	0	2	2	2	0	2	3	2	rs375737032	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ZFP1,NS,carcinoma,0,1	ZFP1	NM_153688	exon4	c.G963T	p.E321D	GGGGGAGAAACGC	.	84	4	41	0	.	0	T	75203971	G	T	75203971	3	4	7	1	0	0	0	0	1	0	0	0	17694	933	33	3	973	3	ZFP1	16	75203971	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	7631246	75203971	15150782	105	1049											
DVL2	1856	broad.mit.edu	37	chr17	7129307	7129307	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggcccccggaggctgCactgctggagggactggagg	6	4	21	10	1	0	0	0	0	0	0	0	5	0	5	2	9	2	3	2	9	0	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	DVL2	NM_004422	exon15	c.G2088A	p.V696V	AGGCTGCACTGCT	.	32	3	26	0	.	49	T	7129307	C	T	7129307	2	4	7	1	0	0	0	0	0	0	0	1	4862	697	25	3		3	DVL2	17	7129307	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		7129307	74065903	106	1050											
UNC45B	146862	hgsc.bcm.edu	37	chr17	33504088	33504088	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgtgggcaaggtgaaggcagCccacgctctagcaaagatcg	11	6	14	10	2	1	2	0	1	1	1	2	2	1	2	1	3	2	4	1	3	4	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	UNC45B,NS,carcinoma,0,1	UNC45B	NM_173167	exon16	c.C2084T	p.A695V	AGGCAGCCCACGC	.	47	2	28	0	.	0	T	33504088	C	T	33504088	3	4	7	1	0	0	0	0	1	0	0	0	17049	739	26	3	2142	3	UNC45B	17	33504088	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	26374781	33504088	47691122	107	1051											
FMNL1	752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	43322776	43322776	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgctggcagacagcaagaCggctcaggtgcgccagggct	8	5	16	12	2	1	2	1	0	0	2	1	2	1	2	1	4	3	6	1	4	1	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_005892	exon22	c.C2885T	p.T962M	GCAAGACGGCTCA	.	37	9	26	0	.	.	T	43322776	C	T	43322776	3	4	7	1	0	0	0	0	1	0	0	0	5984	536	19	1	2971	1	FMNL1	17	43322776	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	9818688	43322776	37872434	108	1052											
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	62020345	62020345	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtccaccttgagctggctctGgttgtctgtctccaccatca	5	13	9	14	0	4	1	1	1	3	0	6	1	5	1	4	2	1	3	4	2	0	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_000334	exon23	c.C4129T	p.Q1377X	GGCTCTGGTTGTC	.	27	5	17	0	.	.	A	62020345	G	A	62020345	4	1	7	1	0	0	0	0	0	1	0	0	13974	1357	47	3	1389	3	SCN4A	17	62020345	Nonsense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	18697569	62020345	19174865	109	1053											
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44579415	44579415	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaaaagtcatcagacaCaggtacatgcctattttcta	14	12	6	9	0	4	1	3	0	1	1	4	1	4	1	1	1	2	1	1	1	5	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_031303	exon2	c.C71T	p.T24I	CAGACACAGGTAC	.	60	23	45	0	.	.	T	44579415	C	T	44579415	3	4	7	1	0	0	0	0	1	0	0	0	8030	478	17	3	73	3	KATNAL2	18	44579415	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		44579415	33497833	110	1054											
CCDC102B	79839	hgsc.bcm.edu	37	chr18	66721302	66721302	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatcagatccgtaagctccaGaggtctctggatgaagagaa	14	8	11	8	1	2	4	1	1	1	3	5	6	4	5	2	2	1	2	2	2	4	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CCDC102B,NS,malignant_melanoma,0,2	CCDC102B	NM_001093729	exon10	c.G1470T	p.Q490H	GCTCCAGAGGTCT	.	41	2	36	0	.	0	T	66721302	G	T	66721302	3	4	7	1	0	0	0	0	1	0	0	0	2755	933	33	3	1496	3	CCDC102B	18	66721302	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	22141887	66721302	11355946	111	1055											
ELANE	1991	hgsc.bcm.edu	37	chr19	853306	853306	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cctgggagcccataacctctCgcggcgggagcccacccggc	6	4	13	18	4	1	0	0	0	1	0	2	2	1	2	5	4	3	0	5	4	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001972	exon3	c.C269T	p.S90L	ACCTCTCGCGGCG	.	9	5	6	0	.	.	T	853306	C	T	853306	3	4	7	1	0	0	0	0	1	0	0	0	5076	893	31	1	279	1	ELANE	19	853306	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09		853306	58275677	112	1056											
SF3A2	8175	hgsc.bcm.edu	37	chr19	2248134	2248134	+	Silent	SNP	G	G	A																															gtccacccaccaacctctggGgtccaccccccagctcctgg																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007165	exon9	c.G984A	p.G328G	CTCTGGGGTCCAC	.	23	4	12	0	.	.	A	2248134	G	A	2248134	2	1	7	1	0	0	0	0	0	0	0	1	14201	1219	43	3		3	SF3A2	19	2248134	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	1394828	2248134	56880849	113	1057	5	3									
SF3A2	8175	hgsc.bcm.edu	37	chr19	2248143	2248143	+	Silent	SNP	C	C	T																															ccaacctctggggtccacccCccagctcctggagtccaccc																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007165	exon9	c.C993T	p.P331P	CCACCCCCCAGCT	.	25	7	12	0	.	.	T	2248143	C	T	2248143	2	4	7	1	0	0	0	0	0	0	0	1	14201	610	22	3		3	SF3A2	19	2248143	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	9	2248143	56880840	114	1058	5	3									
SF3A2	8175	hgsc.bcm.edu	37	chr19	2248149	2248149	+	Silent	SNP	T	T	C																															tctggggtccaccccccagcTcctggagtccaccctccagc																								novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SF3A2,colon,carcinoma,0,1	SF3A2	NM_007165	exon9	c.T999C	p.A333A	CCCAGCTCCTGGA	.	24	7	13	1	.	0	C	2248149	T	C	2248149	2	2	7	1	0	0	0	0	0	0	0	1	14201	1538	54	4		4	SF3A2	19	2248149	Silent	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	6	2248149	56880834	115	1059	5	3									
GNA15	2769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3157762	3157762	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcctcgcattgtttgggactAtcctggaactaccctggttc	6	13	10	12	1	0	0	0	0	0	0	3	2	1	2	3	3	2	3	3	3	3	5	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002068	exon6	c.A781G	p.I261V	GGGACTATCCTGG	.	113	7	64	0	.	.	G	3157762	A	G	3157762	3	3	7	1	0	0	0	0	1	0	0	0	6545	449	16	4	803	4	GNA15	19	3157762	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	909613	3157762	55971221	116	1060											
TICAM1	148022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	4816516	4816516	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtggcggctgcgggcaccccGgccaagtgggaaagggtggc	6	4	20	11	3	0	0	0	0	0	0	0	1	0	1	3	7	1	2	3	7	2	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_182919	exon2	c.C1874T	p.P625L	CACCCCGGCCAAG	.	48	24	23	0	.	.	A	4816516	G	A	4816516	3	1	7	1	0	0	0	0	1	0	0	0	15952	1116	39	1	268	1	TICAM1	19	4816516	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	1658754	4816516	54312467	117	1061											
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	15536231	15536231	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatgggcgtcaggctgAgctcacgaggaacctgggcc	8	6	16	11	2	2	2	2	2	0	0	2	4	2	3	2	4	2	2	2	4	1	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_021241	exon5	c.T1430G	p.L477R	AGGCTGAGCTCAC	.	41	16	13	0	.	.	C	15536231	A	C	15536231	3	2	7	1	0	0	0	0	1	0	0	0	17435	304	11	4	970	4	WIZ	19	15536231	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	10719715	15536231	43592752	118	1062											
ISYNA1	51477	hgsc.bcm.edu	37	chr19	18548727	18548727	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cggtactcgtattgcgcctcGatggcctcggggccgtagac	5	9	14	13	6	0	1	0	0	0	1	3	2	0	1	3	4	2	3	3	4	3	4	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001170938	exon2	c.C63T	p.I21I	CGCCTCGATGGCC	.	27	4	13	0	.	.	A	18548727	G	A	18548727	2	1	7	1	0	0	0	0	0	0	0	1	7911	1048	37	1		1	ISYNA1	19	18548727	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	3012496	18548727	40580256	119	1063											
ZNF99	7652	hgsc.bcm.edu;bcgsc.ca	37	chr19	22952120	22952120	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtcacatcccaaaatgtcaAcgatccctgaaaaacacaac	17	6	5	13	1	2	1	2	1	0	0	4	2	4	1	2	1	3	0	2	1	6	0	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001080409	exon2	c.T10C	p.L4L	ATGTCAACGATCC	.	91	4	52	0	.	.	G	22952120	A	G	22952120	2	3	7	1	0	0	0	0	0	0	0	1	18246	40	2	4		4	ZNF99	19	22952120	Silent	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	4403393	22952120	36176863	120	1064											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39006851	39006851	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaagtctccgcgggagCgggccagtaagctgtgtggg	7	6	16	12	3	1	0	0	0	1	0	2	1	1	1	4	3	2	2	4	3	2	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001042723	exon65	c.C9679T	p.R3227W	CGGGAGCGGGCCA	.	89	42	56	0	.	.	T	39006851	C	T	39006851	3	4	7	1	0	0	0	0	1	0	0	0	13820	759	27	1	9937	1	RYR1	19	39006851	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	16054731	39006851	20122132	121	1065											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39229091	39229091	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cccccgtccactccacgcagCcccatgggttccgcagccgc	5	5	9	22	4	0	0	0	0	0	0	3	0	3	0	8	1	2	3	8	1	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_144691	exon7	c.G857A	p.G286D	ACGCAGCCCCATG	.	74	8	62	0	.	.	T	39229091	C	T	39229091	3	4	7	1	0	0	0	0	1	0	0	0	2643	739	26	3	1362	3	CAPN12	19	39229091	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	222240	39229091	19899892	122	1066											
TTC9B	148014	hgsc.bcm.edu	37	chr19	40722126	40722126	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgtcttcccgctggaggcTgcaacgattcatcttcagct	7	12	9	13	2	4	0	2	0	2	0	5	2	5	1	1	2	3	4	1	2	1	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TTC9B,NS,carcinoma,0,1	TTC9B	NM_152479	exon3	c.A664G	p.S222G	GGAGGCTGCAACG	.	37	2	27	0	.	0	C	40722126	T	C	40722126	3	2	7	1	0	0	0	0	1	0	0	0	16778	1580	55	4	59	4	TTC9B	19	40722126	Missense_Mutation	SNP	T	TCGA-4G-AAZT-01A-11D-A417-09	1493035	40722126	18406857	123	1067											
SHKBP1	92799	hgsc.bcm.edu	37	chr19	41086736	41086736	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cgactggcgctcacagcccgGgtgcatggtggggctttggg	4	8	18	11	3	1	0	1	0	0	0	1	1	1	0	1	6	2	3	1	6	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_138392	exon9	c.G738T	p.R246R	AGCCCGGGTGCAT	.	65	4	42	0	.	.	T	41086736	G	T	41086736	2	4	7	1	0	0	0	0	0	0	0	1	14339	1219	43	3		3	SHKBP1	19	41086736	Silent	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09	364610	41086736	18042247	124	1068											
CPT1C	126129	hgsc.bcm.edu	37	chr19	50214055	50214055	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaggccggacggagacggtgCggtcttgcacgagggaggcc	8	4	19	10	5	1	1	0	0	1	1	1	5	1	3	2	7	2	1	2	7	1	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CPT1C,caecum,carcinoma,-1,1	CPT1C	NM_001199752	exon16	c.C1807T	p.R603W	ACGGTGCGGTCTT	.	33	2	25	0	.	-1	T	50214055	C	T	50214055	3	4	7	1	0	0	0	0	1	0	0	0	3856	759	27	1	1861	1	CPT1C	19	50214055	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	9127319	50214055	8914928	125	1069											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	8703060	8703060	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atgactgtaaaaaatcttcaAtggatgaggtgggtacttag	14	12	11	4	0	2	2	1	2	1	0	2	3	2	3	0	3	1	2	0	3	6	4	rs138851178	bycluster;alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015192	exon15	c.G1573C	p.E525Q	TCTTCAATGGATG	.	104	42	62	0	.	.	C	8703060	A	C	8703060	3	2	7	1	0	0	0	0	1	0	0	0	12075	101	4	4	1631	4	PLCB1	20	8703060	Missense_Mutation	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09		8703060	54322460	126	1070											
CHD6	84181	hgsc.bcm.edu	37	chr20	40161871	40161871	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctgggttcctttggctctttCggttctcgtttcctctttgg	0	20	10	11	2	3	0	0	0	3	0	7	0	5	0	2	4	0	4	2	4	0	6	rs61756303		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_032221	exon3	c.G372A	p.P124P	CTCTTTCGGTTCT	.	100	4	46	0	.	.	T	40161871	C	T	40161871	2	4	7	1	0	0	0	0	0	0	0	1	3351	871	31	1		1	CHD6	20	40161871	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	31458811	40161871	22863649	127	1071											
NEURL2	140825	hgsc.bcm.edu	37	chr20	44518856	44518856	+	RNA	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agattccagtccccacactgAgccaggaggggtcgctgccc	8	6	12	15	1	0	2	0	1	0	1	3	3	2	3	5	3	2	1	5	3	0	1	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	ACACTGAGCCAGG	.	19	6	11	0	.	.	C	44518856	A	C	44518856	1	2	7	0	1	0	0	0	0	0	0	0	10393	319	11	4		4	NEURL2	20	44518856	RNA	SNP	A	TCGA-4G-AAZT-01A-11D-A417-09	4356985	44518856	18506664	128	1072											
VAPB	9217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57016107	57016107	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaggctgcaaggtgaagttCagaggctacgggaggagaac	13	5	17	6	1	1	4	1	1	0	3	1	6	1	5	0	5	3	4	0	5	4	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004738	exon5	c.C541A	p.Q181K	GAAGTTCAGAGGC	.	56	27	38	0	.	.	A	57016107	C	A	57016107	3	1	7	1	0	0	0	0	1	0	0	0	17182	827	29	3	559	3	VAPB	20	57016107	Missense_Mutation	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	12497251	57016107	6009413	129	1073											
BAGE	85319	broad.mit.edu	37	chr21	11066244	11066249	+	RNA	DEL	CAAAAA	CAAAAA	-																															aacagagtgagactccatctCaaaaacaaaaacaaaaacaa																								rs201145462	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CCATCTCAAAAAC	.	6	2	5	0	.	.	-	11066249	CAAAAA	-	11066244	6	5	7	0	1	1	0	1	0	0	0	0	1289	841	29	0		0	BAGE	21	11066244	RNA	DEL	CAAAAA	TCGA-4G-AAZT-01A-11D-A417-09		11066244	37063651	130	1074											
CLTCL1	8218	hgsc.bcm.edu	37	chr22	19213069	19213069	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacctgcacacacagctgaaGgttctgtctgatgttagcag	10	10	10	11	0	2	2	0	2	2	0	2	2	2	2	1	1	3	5	1	1	2	2	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001835	exon13	c.C2035A	p.L679I	GCTGAAGGTTCTG	.	26	4	17	0	.	.	T	19213069	G	T	19213069	3	4	7	1	0	0	0	0	1	0	0	0	3590	1000	35	3	2967	3	CLTCL1	22	19213069	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		19213069	32091497	131	1075											
XBP1	7494	bcgsc.ca	37	chr22	29195030	29195030	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aatggataaaagagtttgacCttaagtagttttacctcttc	13	15	7	6	0	1	2	0	1	1	1	2	3	1	3	2	1	1	3	2	1	6	7	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	XBP1	.	.	.	.	TTTGACCTTAAGT	.	22	4	27	0	.	37	T	29195030	T	T	29195030	2	4	7	1	0	0	0	0	0	0	0	1	17482	696	24	3		3	XBP1	22	29195030	Silent	SNP	C	TCGA-4G-AAZT-01A-11D-A417-09	9981961	29195030	22109536	132	1076											
CNKSR2	22866	broad.mit.edu	37	chrX	21534642	21534642	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atttggtgaatgcactacgaGaggacccgagtggtgttatc	10	11	13	7	2	0	2	0	1	0	1	1	5	0	3	1	3	2	2	1	3	3	3	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	CNKSR2	NM_001168647	exon9	c.G850C	p.E284Q	CTACGAGAGGACC	.	109	4	45	1	.	158	C	21534642	G	C	21534642	3	2	7	1	0	0	0	0	1	0	0	0	3630	943	33	5	884	5	CNKSR2	23	21534642	Missense_Mutation	SNP	G	TCGA-4G-AAZT-01A-11D-A417-09		21534642	133735918	133	1077											
NOL9	79707	hgsc.bcm.edu	37	chr1	6593398	6593398	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctctcttgtaagcgctgaaCacatatttcactatgtcaat	11	15	5	10	1	4	1	2	1	2	0	5	1	4	1	0	0	2	2	0	0	5	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	NOL9,NS,carcinoma,0,1	NOL9	NM_024654	exon7	c.G1179A	p.V393V	GCTGAACACATAT	.	41	2	43	0	.	0	T	6593398	C	T	6593398	2	4	8	1	0	0	0	0	0	0	0	1	10575	465	17	3		3	NOL9	1	6593398	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		6593398	242657223	1	1078											
PLEKHM2	23207	bcgsc.ca	37	chr1	16056369	16056369	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccccagcatcctgacggatgCcaccatggagaagctggcac	10	5	11	15	1	0	2	0	1	0	1	1	4	1	3	5	3	3	3	5	3	1	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PLEKHM2	NM_015164	exon14	c.C2153T	p.A718V	CGGATGCCACCAT	.	23	3	53	0	.	94	T	16056369	T	T	16056369	3	4	8	1	0	0	0	0	1	0	0	0	12129	739	26	3	2207	3	PLEKHM2	1	16056369	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	9462971	16056369	233194252	2	1079											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	16462176	16462176	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggtaagtgacctcgtactTccacactcggctctgctgcg	6	10	11	14	4	1	1	0	1	1	0	4	1	2	1	2	2	3	4	2	2	2	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004431	exon6	c.A1402T	p.K468X	CGTACTTCCACAC	.	45	9	75	0	.	.	A	16462176	T	A	16462176	4	1	8	1	0	0	0	0	0	1	0	0	5195	1792	62	5	1576	5	EPHA2	1	16462176	Nonsense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	405807	16462176	232788445	3	1080											
FBXO42	54455	hgsc.bcm.edu	37	chr1	16632409	16632409	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accatgataacactgatgggCtacacctaagacagaaagag	17	6	9	9	0	0	5	0	2	0	3	0	5	0	5	2	1	2	1	2	1	4	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	FBXO42,NS,carcinoma,0,1	FBXO42	NM_018994	exon3	c.G256A	p.A86T	GATGGGCTACACC	.	20	2	26	0	.	0	T	16632409	C	T	16632409	3	4	8	1	0	0	0	0	1	0	0	0	5784	797	28	3	1929	3	FBXO42	1	16632409	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	170233	16632409	232618212	4	1081											
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	35370532	35370532	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtgcccgtccctggcgctggCccgggccctgcccctgctgg	0	7	15	19	3	0	0	0	0	0	0	1	0	1	0	6	4	3	2	6	4	0	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001080418	exon1	c.G453C	p.G151G	CGCTGGCCCGGGC	.	13	4	17	0	.	.	G	35370532	C	G	35370532	2	3	8	1	0	0	0	0	0	0	0	1	4589	726	26	5		5	DLGAP3	1	35370532	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	18738123	35370532	213880089	5	1082											
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	35824927	35824927	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctagtaagagaaaacagcAaagagacattttctggaaag	18	8	10	5	0	2	2	0	0	2	2	2	5	2	3	0	1	2	2	0	1	6	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005095	exon3	c.A487C	p.K163Q	AACAGCAAAGAGA	.	82	28	118	0	.	.	C	35824927	A	C	35824927	3	2	8	1	0	0	0	0	1	0	0	0	17760	131	5	4	497	4	ZMYM4	1	35824927	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	454395	35824927	213425694	6	1083											
RAD54L	8438	bcgsc.ca	37	chr1	46733249	46733249	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgatctgcttgagtatttcaGcttggtacattttgttaatt	8	20	8	5	0	2	2	1	2	1	0	2	2	2	2	0	1	3	5	0	1	3	9	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	RAD54L	NM_003579	exon9	c.G1010T	p.S337I	ATTTCAGCTTGGT	.	54	5	54	0	.	64	T	46733249	T	T	46733249	3	4	8	1	0	0	0	0	1	0	0	0	13045	971	34	3	1044	3	RAD54L	1	46733249	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	10908322	46733249	202517372	7	1084											
PCSK9	255738	hgsc.bcm.edu	37	chr1	55529044	55529044	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcgggctctggcaggtGaccgtggcctgcgaggaggg	4	8	18	11	3	1	1	0	1	1	0	3	3	2	2	3	6	1	2	3	6	0	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_174936	exon12	c.G1866T	p.V622V	GCAGGTGACCGTG	.	83	4	117	0	.	.	T	55529044	G	T	55529044	2	4	8	1	0	0	0	0	0	0	0	1	11653	1277	45	3		3	PCSK9	1	55529044	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	8795795	55529044	193721577	8	1085											
TUFT1	7286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151553512	151553512	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgggccaagacagagaaccCgggcaggtgagtgagcgtgt	10	4	17	10	3	0	4	0	2	0	2	0	5	0	4	3	3	2	1	3	3	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020127	exon12	c.C1103T	p.P368L	AGAACCCGGGCAG	.	34	14	44	0	.	.	T	151553512	C	T	151553512	3	4	8	1	0	0	0	0	1	0	0	0	16834	652	23	1	1149	1	TUFT1	1	151553512	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	96024468	151553512	97697109	9	1086											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158605703	158605703	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccttctgtatcccactcacCgggccttggccaactctttg	5	12	8	16	1	3	0	1	0	2	0	4	0	4	0	5	2	1	1	5	2	2	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_003126	exon38	c.G5432A	p.R1811Q	ACTCACCGGGCCT	.	33	13	37	0	.	.	T	158605703	C	T	158605703	3	4	8	1	0	0	0	0	1	0	0	0	15172	666	23	1	1887	1	SPTA1	1	158605703	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	7052191	158605703	90644918	10	1087											
F5	2153	hgsc.bcm.edu	37	chr1	169500257	169500257	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggatgctaaatttttaaaacGaacctaggaaaaggaatgat	18	10	9	4	1	0	1	0	1	0	0	0	5	0	4	1	3	3	1	1	3	9	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	F5,NS,carcinoma,0,1	F5	NM_000130	exon15	c.C4975A	p.R1659S	TAAAACGAACCTA	.	47	2	43	0	.	0	T	169500257	G	T	169500257	3	4	8	1	0	0	0	0	1	0	0	0	5376	1058	37	2	1743	2	F5	1	169500257	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	10894554	169500257	79750364	11	1088											
HMCN1	83872	hgsc.bcm.edu	37	chr1	186064631	186064631	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaagctggagaagtcagcaaGcactttatcctcaaggtcct	12	9	10	10	0	2	1	2	0	0	1	4	3	4	1	2	2	3	3	2	2	5	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_031935	exon68	c.G10551T	p.K3517N	CAGCAAGCACTTT	.	70	3	76	0	.	.	T	186064631	G	T	186064631	3	4	8	1	0	0	0	0	1	0	0	0	7261	962	34	3	10821	3	HMCN1	1	186064631	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	16564374	186064631	63185990	12	1089											
CRB1	23418	hgsc.bcm.edu	37	chr1	197313409	197313409	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tctgtgctgacttttttaaaAggtgtaaactgtgaattgga	11	16	10	4	0	1	2	0	2	1	0	1	3	1	3	0	2	2	2	0	2	5	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001257965	exon5	c.446-2A>G	.	TTTAAAAGGTGTA	.	90	4	106	0	.	.	G	197313409	A	G	197313409	5	3	8	1	0	0	0	0	0	0	1	0	3871	86	3	4	661	4	CRB1	1	197313409	Splice_Site	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	11248778	197313409	51937212	13	1090											
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201286846	201286846	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	acccggaggcagaatgggatCcgcgaggcagtcagcctcct	9	5	14	13	3	1	1	1	0	0	1	3	4	3	3	4	4	1	2	4	4	1	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001005337	exon5	c.C993T	p.I331I	TGGGATCCGCGAG	.	45	5	45	0	.	.	T	201286846	C	T	201286846	2	4	8	1	0	0	0	0	0	0	0	1	12032	845	30	3		3	PKP1	1	201286846	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	3973437	201286846	47963775	14	1091											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205027755	205027755	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagctcatgaaggctgggggGtgatgttgccctgtaaccca	9	9	14	9	0	1	2	1	2	0	0	1	2	1	2	2	4	3	4	2	4	3	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005076	exon5	c.G451T	p.V151L	TGGGGGGTGATGT	.	32	13	46	0	.	.	T	205027755	G	T	205027755	3	4	8	1	0	0	0	0	1	0	0	0	3664	1261	44	3	465	3	CNTN2	1	205027755	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	3740909	205027755	44222866	15	1092											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	237777618	237777618	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtacattgtccccatgacGgaggagacgaagagcatcac	13	6	12	10	2	1	3	1	1	0	2	2	7	2	4	2	2	2	2	2	2	2	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001035	exon37	c.G5190A	p.T1730T	CATGACGGAGGAG	.	30	8	37	0	.	.	A	237777618	G	A	237777618	2	1	8	1	0	0	0	0	0	0	0	1	13821	1103	39	1		1	RYR2	1	237777618	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	32749863	237777618	11473003	16	1093											
RGS7	6000	hgsc.bcm.edu	37	chr1	240979680	240979680	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtgtgtgggtaggactGtgacttctaatatcattttg	7	16	14	4	0	2	1	1	1	1	0	2	2	2	2	0	3	0	1	0	3	3	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002924	exon11	c.C720T	p.H240H	AGGACTGTGACTT	.	100	4	115	0	.	.	A	240979680	G	A	240979680	2	1	8	1	0	0	0	0	0	0	0	1	13360	1368	48	3		3	RGS7	1	240979680	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	3202062	240979680	8270941	17	1094											
SH3BP5L	80851	hgsc.bcm.edu	37	chr1	249119038	249119038	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acctcctccaggctcttctgCgactgggctcctagggactt	5	11	10	15	1	2	0	0	0	2	0	5	2	5	1	4	3	1	2	4	3	1	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	SH3BP5L,NS,carcinoma,0,1	SH3BP5L	NM_030645	exon2	c.G97A	p.A33T	CTTCTGCGACTGG	.	34	2	41	0	.	0	T	249119038	C	T	249119038	3	4	8	1	0	0	0	0	1	0	0	0	14302	768	27	1	1108	1	SH3BP5L	1	249119038	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	8139358	249119038	131583	18	1095											
GREB1	9687	hgsc.bcm.edu	37	chr2	11720942	11720942	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aataacctgttggccctgccGcgaccatcggctttaggtag	8	10	11	12	3	0	0	0	0	0	0	1	1	0	0	4	3	2	3	4	3	4	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	GREB1_ENST00000381486,caecum,carcinoma,0,3	GREB1_ENST00000381486	NM_148903	exon7	c.G885T	p.P295P	CCTGCCGCGACCA	.	53	3	56	0	.	0	T	11720942	G	T	11720942	2	4	8	1	0	0	0	0	0	0	0	1	6801	1074	38	2		2	GREB1	2	11720942	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		11720942	231478431	19	1096											
MAP4K3	8491	broad.mit.edu	37	chr2	39564669	39564669	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aattagcacttgatttacctGcagtgtttctctgctaacat	10	16	6	9	0	1	1	0	1	1	0	2	1	1	1	1	0	5	4	1	0	4	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	MAP4K3	NM_001270425	exon5	c.C364A	p.Q122K	TTACCTGCAGTGT	.	70	3	88	0	.	109	T	39564669	G	T	39564669	3	4	8	1	0	0	0	0	1	0	0	0	9311	1328	46	3	2440	3	MAP4K3	2	39564669	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	27843727	39564669	203634704	20	1097											
KCMF1	56888	hgsc.bcm.edu	37	chr2	85280314	85280314	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaacggagcgccagtccatgGaaagcgagcgtgcagaccgc	12	3	14	12	5	0	1	0	0	0	1	1	4	1	3	3	2	5	1	3	2	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KCMF1_ENST00000409785,NS,carcinoma,0,1	KCMF1_ENST00000409785	NM_020122	exon7	c.G928T	p.E310X	TCCATGGAAAGCG	.	41	2	59	0	.	0	T	85280314	G	T	85280314	4	4	8	1	0	0	0	0	0	1	0	0	8044	1175	41	3	954	3	KCMF1	2	85280314	Nonsense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	45715645	85280314	157919059	21	1098											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97217620	97217620	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagcctggaggaagagggtgCtgcccacagtgggaagagac	11	4	17	9	0	0	2	0	0	0	2	0	6	0	5	2	4	3	1	2	4	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_212481	exon7	c.C1355T	p.A452V	AGGGTGCTGCCCA	.	16	4	20	0	.	.	T	97217620	C	T	97217620	3	4	8	1	0	0	0	0	1	0	0	0	918	797	28	3	1381	3	ARID5A	2	97217620	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	11937306	97217620	145981753	22	1099											
SLC35F5	80255	hgsc.bcm.edu	37	chr2	114500277	114500277	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaaagacctaccacaaagcAaaaaaaaaagctaattttcg	22	7	4	8	1	0	1	0	0	0	1	1	1	0	1	2	0	3	2	2	0	10	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	SLC35F5,colon,carcinoma,+2,12	SLC35F5	NM_025181	exon7	c.T742G	p.C248G	CAAAGCAAAAAAA	.	69	3	52	0	.	+2	C	114500277	A	C	114500277	3	2	8	1	0	0	0	0	1	0	0	0	14647	130	5	4	865	4	SLC35F5	2	114500277	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	17282657	114500277	128699096	23	1100											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170103393	170103393	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagtgattggaagccagcctCattccataagggcacccaca	13	7	9	12	0	1	1	1	1	0	0	2	2	2	2	4	2	2	1	4	2	3	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004525	exon21	c.G3012T	p.M1004I	CAGCCTCATTCCA	.	32	7	39	0	.	.	A	170103393	C	A	170103393	3	1	8	1	0	0	0	0	1	0	0	0	9001	826	29	3	11191	3	LRP2	2	170103393	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	55603116	170103393	73095980	24	1101											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	204022462	204022462	+	Frame_Shift_Del	DEL	G	G	-																															tccagtgatacattgcttttGgaagtagtgaaacaagtaaa																								novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001114132	exon35	c.5540delT	p.L1847fs	GCTTTTGGAAGTA	.	88	26	48	0	.	.	-	204022462	G	-	204022462	7	5	8	1	0	1	0	1	0	0	0	0	10236	1339	47	0	5675	0	NBEAL1	2	204022462	Frame_Shift_Del	DEL	G	TCGA-W5-AA2G-01A-11D-A417-09	33919069	204022462	39176911	25	1102											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttgatccccataagcatgacGacctatgatgataggtttta	12	13	8	8	1	0	4	0	4	0	0	1	5	1	4	3	1	1	2	3	1	4	6	rs121913499	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	49	20	51	0	.	0	A	209113113	G	A	209113113	3	1	8	1	0	0	0	0	1	0	0	0	7538	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	5090651	209113113	34086260	26	1103											
FN1	2335	ucsc.edu;bcgsc.ca	37	chr2	216271210	216271210	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacttccacaaactgcaGgtccctgggagagggcactg	9	8	12	12	0	1	1	1	0	0	1	3	2	3	1	2	3	2	2	2	3	1	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	FN1	NM_212476	exon19	c.C2737A	p.L913M	ACTGCAGGTCCCT	.	27	4	34	0	.	521	T	216271210	G	T	216271210	3	4	8	1	0	0	0	0	1	0	0	0	5995	991	35	3	4808	3	FN1	2	216271210	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	7158097	216271210	26928163	27	1104											
ZNF385D	79750	hgsc.bcm.edu	37	chr3	21462759	21462759	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtccgaatgggtccaggagCtggccgcaggagtgccggag	7	5	19	10	3	0	0	0	0	0	0	2	4	2	3	4	6	2	2	4	6	1	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_024697	exon8	c.G1135T	p.A379S	CAGGAGCTGGCCG	.	51	4	98	0	.	.	A	21462759	C	A	21462759	3	1	8	1	0	0	0	0	1	0	0	0	17935	797	28	3	56	3	ZNF385D	3	21462759	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		21462759	176559671	28	1105											
ULK4	54986	hgsc.bcm.edu	37	chr3	41860985	41860985	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccagcactctctagggttcTtttttttttcttcctaaaat	7	19	4	11	0	3	0	0	0	3	0	5	0	4	0	2	1	1	2	2	1	3	9	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.,10	.	NM_017886	exon19	c.A1778G	p.K593R	GGGTTCTTTTTTT	.	32	3	59	1	.	150	C	41860985	T	C	41860985	3	2	8	1	0	0	0	0	1	0	0	0	17038	1609	56	4	2125	4	ULK4	3	41860985	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	20398226	41860985	156161445	29	1106											
KIF9	64147	hgsc.bcm.edu	37	chr3	47284677	47284677	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtcttggaggtggaaaCgtaatccaagtccttcccat	9	11	11	10	1	1	0	0	0	1	0	4	2	4	2	3	4	1	1	3	4	3	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KIF9,colon,carcinoma,0,1	KIF9	NM_182902	exon16	c.G1573A	p.V525I	TGGAAACGTAATC	.	29	2	54	0	.	0	T	47284677	C	T	47284677	3	4	8	1	0	0	0	0	1	0	0	0	8352	536	19	1	823	1	KIF9	3	47284677	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	5423692	47284677	150737753	30	1107											
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48608557	48608557	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cacacctggagggccaggagGcccaggggagcccgggaccc	8	1	17	15	1	0	0	0	0	0	0	0	4	0	4	5	7	1	0	5	7	0	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000094	exon93	c.C7141G	p.P2381A	CAGGAGGCCCAGG	.	28	8	46	0	.	.	C	48608557	G	C	48608557	3	2	8	1	0	0	0	0	1	0	0	0	3727	1203	42	5	1797	5	COL7A1	3	48608557	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	1323880	48608557	149413873	31	1108											
FILIP1L	11259	bcgsc.ca	37	chr3	99568935	99568935	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aactgttgttactttattttGctccacttgaagctgagaag	10	16	8	7	0	0	2	0	2	0	1	1	3	1	2	1	0	4	4	1	0	5	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	FILIP1L	NM_182909	exon5	c.C1585A	p.Q529K	TATTTTGCTCCAC	.	21	3	34	0	.	154	T	99568935	T	T	99568935	3	4	8	1	0	0	0	0	1	0	0	0	5928	1328	46	3	1851	3	FILIP1L	3	99568935	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	50960378	99568935	98453495	32	1109											
CD96	10225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	111261150	111261150	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatcatccagatacattttGtcaagggtaagacttccagt	13	12	7	9	0	2	2	2	0	0	2	4	2	4	2	2	1	1	1	2	1	3	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005816	exon1	c.G55T	p.V19F	CATTTTGTCAAGG	.	49	4	53	0	.	.	T	111261150	G	T	111261150	3	4	8	1	0	0	0	0	1	0	0	0	3070	1377	48	3	57	3	CD96	3	111261150	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	11692215	111261150	86761280	33	1110											
C3orf52	79669	hgsc.bcm.edu	37	chr3	111835806	111835806	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtttttgttttgtttCgttttgttttttgagacagg	3	26	10	2	1	0	1	0	1	0	1	1	2	0	1	0	1	0	6	0	1	0	11	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	C3orf52_ENST00000431717,NS,carcinoma,0,1	C3orf52_ENST00000431717	NM_001171747	exon4	c.C714A	p.F238L	TTGTTTCGTTTTG	.	17	2	33	0	.	0	A	111835806	C	A	111835806	3	1	8	1	0	0	0	0	1	0	0	0	2246	883	31	2	989	2	C3orf52	3	111835806	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	574656	111835806	86186624	34	1111											
UROC1	131669	broad.mit.edu	37	chr3	126208213	126208213	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatctcggctcaggaccacCggcgcctgtgcatggaagga	8	7	14	12	3	2	1	1	1	1	0	3	4	2	4	3	5	1	2	3	5	1	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	UROC1	NM_001165974	exon18	c.G1794A	p.P598P	GACCACCGGCGCC	.	13	3	27	0	.	150	T	126208213	C	T	126208213	2	4	8	1	0	0	0	0	0	0	0	1	17088	639	23	1		1	UROC1	3	126208213	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	14372407	126208213	71814217	35	1112											
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150176395	150176395	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tccgcagccaacgcaacctcCacagcagccgaatgtctcct	10	6	7	18	3	1	0	0	0	1	0	4	1	3	0	6	0	5	3	6	0	3	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TSC22D2,NS,malignant_melanoma,0,1	TSC22D2	NM_014779	exon4	c.C2315A	p.P772Q	AACCTCCACAGCA	.	36	2	40	0	.	0	A	150176395	C	A	150176395	3	1	8	1	0	0	0	0	1	0	0	0	16669	594	21	3	2329	3	TSC22D2	3	150176395	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	23968182	150176395	47846035	36	1113											
MUC4	4585	hgsc.bcm.edu	37	chr3	195515030	195515030	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgtggatactgaggaagtgtCggtgacaggaagagaggtgg	11	8	19	3	1	0	3	0	2	0	1	1	7	0	6	0	6	1	0	0	6	3	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.G3421A	p.D1141N	AAGTGTCGGTGAC	.	52	3	96	0	.	0	T	195515030	C	T	195515030	3	4	8	1	0	0	0	0	1	0	0	0	10026	884	31	1		1	MUC4	3	195515030	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	45338635	195515030	2507400	37	1114											
SLAIN2	57606	hgsc.bcm.edu;bcgsc.ca	37	chr4	48385777	48385777	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaacggaggaatacctCgtatgcaacctcaggcttca	12	8	9	12	2	2	0	2	0	0	0	3	2	2	2	3	3	5	3	3	3	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020846	exon6	c.C1336A	p.R446S	ATACCTCGTATGC	.	59	4	60	0	.	.	A	48385777	C	A	48385777	3	1	8	1	0	0	0	0	1	0	0	0	14421	884	31	2	1358	2	SLAIN2	4	48385777	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		48385777	142768499	38	1115											
C4orf29	80167	hgsc.bcm.edu	37	chr4	128904141	128904141	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaagttagatattctatacCggagacttctcctaacaaaa	15	11	6	9	1	2	2	0	0	2	2	3	3	2	2	2	1	2	2	2	1	8	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	C4orf29_ENST00000398965,NS,carcinoma,0,2	C4orf29_ENST00000398965	NM_001039717	exon2	c.C31T	p.R11W	CTATACCGGAGAC	.	42	2	57	1	.	0	T	128904141	C	T	128904141	3	4	8	1	0	0	0	0	1	0	0	0	2274	643	23	1	33	1	C4orf29	4	128904141	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	80518364	128904141	62250135	39	1116											
STOX2	56977	bcgsc.ca	37	chr4	184931278	184931278	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgcacagcaacacaaacgtGctcgagtcccacttccccat	12	7	6	16	2	0	0	0	0	0	0	3	1	2	0	3	0	5	3	3	0	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	STOX2	NM_020225	exon3	c.G1287T	p.V429V	AAACGTGCTCGAG	.	19	3	52	0	.	142	T	184931278	T	T	184931278	2	4	8	1	0	0	0	0	0	0	0	1	15376	1306	46	3		3	STOX2	4	184931278	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	56027137	184931278	6222998	40	1117											
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu	37	chr5	56557038	56557038	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggctggcaggaagacAgtgaaaatgatgaaacatgt	17	7	13	4	0	0	4	0	3	0	1	0	5	0	5	0	3	1	2	0	3	5	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001127236	exon10	c.A1213G	p.S405G	GAAGACAGTGAAA	.	94	4	87	0	.	.	G	56557038	A	G	56557038	3	3	8	1	0	0	0	0	1	0	0	0	6635	188	7	4	1251	4	GPBP1	5	56557038	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09		56557038	124358222	41	1118											
NAIP	4671	hgsc.bcm.edu	37	chr5	70299665	70299666	+	Frame_Shift_Ins	INS	-	-	A																															atttcctctgaggatttcttINSactccgaagaaattcacatc																								novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004536	exon6	c.688_689insT	p.K230_K231delinsX	ATTTCTTACTCCG	.	520	41	465	0	.	.	A	70299666	-	A	70299665	7	5	8	1	0	1	1	0	0	0	0	0	10195	1763	61	0	3571	0	NAIP	5	70299665	Frame_Shift_Ins	INS	-	TCGA-W5-AA2G-01A-11D-A417-09	13742627	70299665	110615595	42	1119											
EFNA5	1946	hgsc.bcm.edu	37	chr5	106762982	106762982	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaaaagggagtgaagagctgGaatttttcagagaacttcag	15	9	13	4	0	2	3	2	1	0	2	2	7	2	5	0	2	2	1	0	2	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001962	exon2	c.C354A	p.F118L	GAGCTGGAATTTT	.	67	3	80	0	.	.	T	106762982	G	T	106762982	3	4	8	1	0	0	0	0	1	0	0	0	4980	1165	41	3	348	3	EFNA5	5	106762982	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	36463317	106762982	74152278	43	1120											
PFDN1	5201	hgsc.bcm.edu	37	chr5	139680104	139680104	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttagctgttcaatctGtatgtctgcgagcttcacct	6	17	8	10	1	5	0	2	0	3	0	5	1	5	0	1	0	3	5	1	0	3	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002622	exon2	c.C97A	p.Q33K	CAATCTGTATGTC	.	56	4	70	0	.	.	T	139680104	G	T	139680104	3	4	8	1	0	0	0	0	1	0	0	0	11803	1386	48	3	283	3	PFDN1	5	139680104	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	32917122	139680104	41235156	44	1121											
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140048015	140048015	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cccagagctcattactgtctCcaaggacaaagccatccatg	12	8	7	14	0	2	1	1	0	1	1	4	2	3	2	4	1	3	1	4	1	3	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_017706	exon3	c.C308T	p.S103F	CTGTCTCCAAGGA	.	44	8	60	0	.	.	T	140048015	C	T	140048015	3	4	8	1	0	0	0	0	1	0	0	0	17367	855	30	3	318	3	WDR55	5	140048015	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	367911	140048015	40867245	45	1122											
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu	37	chr5	140347642	140347642	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcggcccactggaccgagagCgggtggctgtctacaacatc	8	6	14	13	3	1	1	0	0	1	1	2	3	1	2	2	4	3	1	2	4	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PCDHAC2,caecum,carcinoma,0,1	PCDHAC2	NM_031883	exon1	c.C1291T	p.R431W	CGAGAGCGGGTGG	.	23	3	22	0	.	0	T	140347642	C	T	140347642	3	4	8	1	0	0	0	0	1	0	0	0	11580	759	27	1	1293	1	PCDHAC2	5	140347642	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	299627	140347642	40567618	46	1123											
LARP1	23367	broad.mit.edu	37	chr5	154190824	154190824	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cagatatggtttggagtgccTttttcgatactacagttatg	9	16	10	6	1	0	1	0	0	0	1	1	3	0	2	1	2	3	2	1	2	4	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	LARP1	NM_015315	exon17	c.T2630C	p.L877P	AGTGCCTTTTTCG	.	55	3	56	0	.	187	C	154190824	T	C	154190824	3	2	8	1	0	0	0	0	1	0	0	0	8667	1609	56	4	2696	4	LARP1	5	154190824	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	13843182	154190824	26724436	47	1124											
GABRP	2568	hgsc.bcm.edu	37	chr5	170222402	170222402	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caggctcatccgcctcttctCcaatggcacggtcctgtatg	6	11	9	15	2	3	0	1	0	2	0	6	0	5	0	4	3	0	3	4	3	2	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	GABRP,trunk,malignant_melanoma,0,1	GABRP	NM_014211	exon5	c.C431A	p.S144Y	TCTTCTCCAATGG	.	31	2	38	0	.	0	A	170222402	C	A	170222402	3	1	8	1	0	0	0	0	1	0	0	0	6209	855	30	3	445	3	GABRP	5	170222402	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	16031578	170222402	10692858	48	1125											
HIST1H4I	8294	hgsc.bcm.edu	37	chr6	27107240	27107240	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagcgcatttctggcctcatCtatgaggagacccgcggagt	9	9	12	11	3	3	2	1	1	2	1	3	4	3	3	2	3	1	1	2	3	2	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HIST1H4I_ENST00000354348,NS,lymphoid_neoplasm,0,2	HIST1H4I_ENST00000354348	NM_003495	exon1	c.C153A	p.I51I	CCTCATCTATGAG	.	37	2	60	0	.	0	A	27107240	C	A	27107240	2	1	8	1	0	0	0	0	0	0	0	1	7214	903	32	3		3	HIST1H4I	6	27107240	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		27107240	144007827	49	1126											
PGBD1	84547	hgsc.bcm.edu	37	chr6	28251740	28251740	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgcgctttcggcacttCtgctaccaggaggctcacgg	5	9	12	15	4	2	0	1	0	1	0	3	1	2	1	2	4	3	4	2	4	1	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PGBD1,right_lower_lobe,carcinoma,0,1	PGBD1	NM_001184743	exon2	c.C150A	p.F50L	GCACTTCTGCTAC	.	13	2	27	0	.	0	A	28251740	C	A	28251740	3	1	8	1	0	0	0	0	1	0	0	0	11828	912	32	3	152	3	PGBD1	6	28251740	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	1144500	28251740	142863327	50	1127											
TRIM39	56658	hgsc.bcm.edu	37	chr6	30297399	30297399	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggccgtcaagcggaagatccGggatgagagcctctgccccc	8	5	14	14	3	2	2	1	1	1	2	3	5	3	4	5	3	3	0	5	3	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TRIM39_ENST00000376656,colon,carcinoma,+1,1	TRIM39_ENST00000376656	NM_172016	exon3	c.G305T	p.R102L	AGATCCGGGATGA	.	30	3	36	1	.	+1	T	30297399	G	T	30297399	3	4	8	1	0	0	0	0	1	0	0	0	16574	1116	39	2	307	2	TRIM39	6	30297399	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	2045659	30297399	140817668	51	1128											
DHX16	8449	bcgsc.ca	37	chr6	30638651	30638651	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaggcatcacgctcctcCaggtcctgaaggcgttcacg	9	7	11	14	3	2	1	2	1	0	0	5	1	5	1	3	3	0	4	3	3	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	DHX16	NM_003587	exon3	c.G525A	p.L175L	CTCCTCCAGGTCC	.	22	3	27	0	.	119	T	30638651	T	T	30638651	2	4	8	1	0	0	0	0	0	0	0	1	4530	581	21	3		3	DHX16	6	30638651	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	341252	30638651	140476416	52	1129											
HLA-B	3106	hgsc.bcm.edu	37	chr6	31323974	31323974	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cagcttgtccttcccgttctCcaggtatctgcggagccact	5	12	9	15	2	2	0	0	0	2	0	5	1	4	1	4	2	3	3	4	2	1	4	rs41545114	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005514	exon3	c.G589A	p.E197K	CGTTCTCCAGGTA	.	37	7	37	0	0.001	.	T	31323974	C	T	31323974	3	4	8	1	0	0	0	0	1	0	0	0	7237	864	30	3	519	3	HLA-B	6	31323974	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	685323	31323974	139791093	53	1130											
DNAH8	1769	broad.mit.edu	37	chr6	38890868	38890868	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgctgatacgtgccggaaaaAgatgcaggccgcctccactc	10	6	11	14	4	0	2	0	1	0	1	2	3	1	3	4	2	3	2	4	2	3	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	DNAH8	NM_001206927	exon72	c.A10697G	p.K3566R	GGAAAAAGATGCA	.	66	3	77	1	.	1239	G	38890868	A	G	38890868	3	3	8	1	0	0	0	0	1	0	0	0	4634	72	3	4	10316	4	DNAH8	6	38890868	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	7566894	38890868	132224199	54	1131											
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	44221323	44221323	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaggatgcgtctcgcatggaAgaagtcgattaggttaggag	11	9	16	5	3	1	1	0	0	1	1	3	6	1	4	0	4	1	2	0	4	4	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_007355	exon12	c.A2163G	p.E721E	CATGGAAGAAGTC	.	43	4	73	0	.	.	G	44221323	A	G	44221323	2	3	8	1	0	0	0	0	0	0	0	1	7445	69	3	4		4	HSP90AB1	6	44221323	Silent	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	5330455	44221323	126893744	55	1132											
LRRC1	55227	hgsc.bcm.edu	37	chr6	53764614	53764614	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttggaaagacttcctgaaGaaatcagtggcctgacttca	12	10	11	8	0	2	4	2	2	0	2	3	5	3	5	2	3	0	1	2	3	3	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	LRRC1,NS,carcinoma,0,4	LRRC1	NM_018214	exon8	c.G712T	p.E238X	CCTGAAGAAATCA	.	109	4	136	0	.	0	T	53764614	G	T	53764614	4	4	8	1	0	0	0	0	0	1	0	0	9011	943	33	3	742	3	LRRC1	6	53764614	Nonsense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	9543291	53764614	117350453	56	1133											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70964698	70964698	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattccagggatcccatcacGgccatccacacctggcaaac	11	6	7	17	1	1	0	1	0	0	0	4	1	4	1	5	3	1	1	5	3	1	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001851	exon24	c.C1633T	p.R545C	CATCACGGCCATC	.	72	17	78	0	.	.	A	70964698	G	A	70964698	3	1	8	1	0	0	0	0	1	0	0	0	3730	1116	39	1	1192	1	COL9A1	6	70964698	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	17200084	70964698	100150369	57	1134											
CASP8AP2	9994	hgsc.bcm.edu	37	chr6	90575684	90575684	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctacagatgtgtttttacCaaattcagctcattctacct	10	17	4	10	0	4	1	2	0	2	1	4	1	4	1	2	0	4	2	2	0	4	8	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001137667	exon8	c.C2675A	p.P892Q	TTTTACCAAATTC	.	77	4	66	0	.	.	A	90575684	C	A	90575684	3	1	8	1	0	0	0	0	1	0	0	0	2696	594	21	3	2701	3	CASP8AP2	6	90575684	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	19610986	90575684	80539383	58	1135											
RTN4IP1	84816	hgsc.bcm.edu	37	chr6	107076815	107076815	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	actaatccttctaactgaagGcttttggacaactttgcttc	10	15	6	10	0	1	1	0	1	1	0	3	2	2	2	1	2	3	2	1	2	4	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	RTN4IP1,neck,malignant_melanoma,0,1	RTN4IP1	NM_032730	exon1	c.C82A	p.P28T	CTGAAGGCTTTTG	.	44	2	44	0	.	0	T	107076815	G	T	107076815	3	4	8	1	0	0	0	0	1	0	0	0	13781	1203	42	3	1144	3	RTN4IP1	6	107076815	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	16501131	107076815	64038252	59	1136											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111636540	111636540	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cggcaatttcctgaccaatcTtaaaagactgctccttagtg	11	12	7	11	1	1	2	0	1	1	1	3	2	3	2	3	1	1	2	3	1	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002912	exon27	c.A8396C	p.K2799T	CCAATCTTAAAAG	.	60	10	69	0	.	.	G	111636540	T	G	111636540	3	3	8	1	0	0	0	0	1	0	0	0	13292	1609	56	4	1020	4	REV3L	6	111636540	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	4559725	111636540	59478527	60	1137											
ROS1	6098	hgsc.bcm.edu	37	chr6	117715380	117715380	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaatctatggagatagaaGaaattaatcctgaacctctg	15	10	8	8	0	2	4	0	1	2	3	3	5	3	4	3	1	1	0	3	1	7	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ROS1_ENST00000368508,caecum,carcinoma,+1,1	ROS1_ENST00000368508	NM_002944	exon10	c.C1109A	p.S370Y	ATAGAAGAAATTA	.	48	2	67	0	.	+1	T	117715380	G	T	117715380	3	4	8	1	0	0	0	0	1	0	0	0	13583	942	33	3	6070	3	ROS1	6	117715380	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	6078840	117715380	53399687	61	1138											
FERD3L	222894	hgsc.bcm.edu	37	chr7	19184746	19184746	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagacacctcttccgcgctcCtcttcctcctcctcttctcc	3	13	4	21	2	4	1	0	0	4	1	10	2	9	1	7	0	0	1	7	0	0	3	rs199985178		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.,2	.	NM_152898	exon1	c.G240A	p.E80E	GCGCTCCTCTTCC	.	13	2	14	0	.	63	T	19184746	C	T	19184746	2	4	8	1	0	0	0	0	0	0	0	1	5849	680	24	3		3	FERD3L	7	19184746	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		19184746	139953917	62	1139											
MLXIPL	51085	hgsc.bcm.edu	37	chr7	73030462	73030463	+	Frame_Shift_Ins	INS	-	-	T																															tcttgtctctgcagagcagcINSttgaggcctttgaaattctt																								novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_032953	exon2	c.339_340insA	p.K113fs	GAGCAGCTTGAGG	.	53	15	41	0	.	.	T	73030463	-	T	73030462	7	5	8	1	0	1	1	0	0	0	0	0	9685	796	28	0	2283	0	MLXIPL	7	73030462	Frame_Shift_Ins	INS	-	TCGA-W5-AA2G-01A-11D-A417-09	53845716	73030462	86108201	63	1140											
FOXP2	93986	hgsc.bcm.edu	37	chr7	114329937	114329937	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acagtccagaattagaagacGacagagagattgaagaagag	19	5	12	5	1	0	8	0	1	0	7	1	10	1	8	1	0	0	0	1	0	5	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	FOXP2,colon,carcinoma,0,1	FOXP2	NM_148898	exon18	c.G2179A	p.D727N	GAAGACGACAGAG	.	48	2	48	0	.	0	A	114329937	G	A	114329937	3	1	8	1	0	0	0	0	1	0	0	0	6061	1058	37	1	2333	1	FOXP2	7	114329937	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	41299475	114329937	44808726	64	1141											
EXOC4	60412	hgsc.bcm.edu	37	chr7	133580353	133580353	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctttgttgttcatttccagaGcacaatcattgtggagaaga	11	14	9	7	0	2	3	2	0	0	3	3	4	3	3	1	1	1	3	1	1	2	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	EXOC4,colon,carcinoma,+1,1	EXOC4	NM_021807	exon12	c.G1736T	p.S579I	TCCAGAGCACAAT	.	42	2	49	0	.	+1	T	133580353	G	T	133580353	3	4	8	1	0	0	0	0	1	0	0	0	5333	985	34	3	1791	3	EXOC4	7	133580353	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	19250416	133580353	25558310	65	1142											
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134632323	134632323	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcgccccccaggtggaagccGgcaaaaggctggaggagctt	9	4	16	12	2	0	0	0	0	0	0	0	3	0	3	4	6	2	3	4	6	3	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_033138	exon8	c.G1597A	p.G533S	GAAGCCGGCAAAA	.	68	8	100	0	.	.	A	134632323	G	A	134632323	3	1	8	1	0	0	0	0	1	0	0	0	2599	1116	39	1	1676	1	CALD1	7	134632323	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	1051970	134632323	24506340	66	1143											
NUP205	23165	hgsc.bcm.edu;bcgsc.ca	37	chr7	135286256	135286256	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cacctatgccccctttcctgGtatatgcttaaaagccttca	9	13	5	14	0	1	0	1	0	0	0	2	0	2	0	5	1	3	2	5	1	5	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_015135	exon17	c.2512+1G>T	.	TTCCTGGTATATG	.	54	4	68	0	.	.	T	135286256	G	T	135286256	5	4	8	1	0	0	0	0	0	0	1	0	10807	1275	44	3	2579	3	NUP205	7	135286256	Splice_Site	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	653933	135286256	23852407	67	1144											
MLL3	58508	hgsc.bcm.edu	37	chr7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caatacctatcacattgtctAcattgcagaataagatcttc	14	13	4	10	0	3	2	1	0	2	2	4	2	3	2	1	0	3	1	1	0	6	7	rs4024337		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	88	5	109	2	.	0	T	151921114	A	T	151921114	4	4	8	1	0	0	0	0	0	1	0	0	9670	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	16634858	151921114	7217549	68	1145											
PAXIP1	22976	bcgsc.ca	37	chr7	154753289	154753289	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagataacccgtatatttggCacctgccaaataagccatta	14	11	6	10	1	0	1	0	0	0	1	0	1	0	1	4	1	3	2	4	1	7	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PAXIP1	NM_007349	exon11	c.G2197A	p.A733T	ATTTGGCACCTGC	.	66	4	60	0	.	150	T	154753289	T	T	154753289	3	4	8	1	0	0	0	0	1	0	0	0	11534	710	25	3	1056	3	PAXIP1	7	154753289	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	2832175	154753289	4385374	69	1146											
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	154863304	154863304	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggctgccaagttccgcgtggGctccaggaagaccaatagcg	9	6	14	12	3	0	1	0	0	0	1	2	2	2	2	4	3	2	3	4	3	4	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_024012	exon1	c.G695T	p.G232V	GCGTGGGCTCCAG	.	29	12	54	0	.	.	T	154863304	G	T	154863304	3	4	8	1	0	0	0	0	1	0	0	0	7494	1203	42	3	697	3	HTR5A	7	154863304	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	110015	154863304	4275359	70	1147											
ADAM28	10863	hgsc.bcm.edu	37	chr8	24199122	24199122	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcagtgataccatgtGtgggaagttgttctgtcaag	8	15	11	7	0	3	1	2	1	1	0	4	2	4	2	2	1	1	2	2	1	3	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ADAM28,NS,carcinoma,0,1	ADAM28	NM_014265	exon16	c.G1682T	p.C561F	CCATGTGTGGGAA	.	31	2	71	0	.	0	T	24199122	G	T	24199122	3	4	8	1	0	0	0	0	1	0	0	0	245	1377	48	3	1800	3	ADAM28	8	24199122	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		24199122	122164900	71	1148											
SNX31	169166	hgsc.bcm.edu;bcgsc.ca	37	chr8	101596346	101596346	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taagagcactcaccatttctGtattctcagcagctagcttt	10	14	6	11	0	3	1	2	0	2	1	4	1	3	1	1	0	4	5	1	0	3	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_152628	exon12	c.C1163T	p.T388I	ATTTCTGTATTCT	.	72	4	75	0	.	.	A	101596346	G	A	101596346	3	1	8	1	0	0	0	0	1	0	0	0	14955	1377	48	3	171	3	SNX31	8	101596346	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	77397224	101596346	44767676	72	1149											
CSMD3	114788	hgsc.bcm.edu	37	chr8	113349922	113349922	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accaattacaaaaccatttcGaaacgggcgtggatcaggac	15	7	9	10	3	1	0	1	0	0	0	2	3	1	2	2	3	3	0	2	3	5	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CSMD3_ENST00000343508,caecum,carcinoma,+1,7	CSMD3_ENST00000343508	NM_198123	exon43	c.C6691A	p.R2231R	CATTTCGAAACGG	.	55	3	118	0	.	+1	T	113349922	G	T	113349922	2	4	8	1	0	0	0	0	0	0	0	1	3971	1066	37	2		2	CSMD3	8	113349922	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	11753576	113349922	33014100	73	1150											
ADCY8	114	broad.mit.edu	37	chr8	131812682	131812682	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttagatttacctcatcgaagTcagcaatgatctcattgagc	12	13	7	9	1	3	3	3	2	1	1	5	4	3	3	1	0	3	1	1	0	4	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ADCY8,NS,carcinoma,+1,1	ADCY8	NM_001115	exon15	c.A3050G	p.D1017G	TCGAAGTCAGCAA	.	89	3	92	0	.	291	C	131812682	T	C	131812682	3	2	8	1	0	0	0	0	1	0	0	0	299	1667	58	4	721	4	ADCY8	8	131812682	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	18462760	131812682	14551340	74	1151											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	133816130	133816130	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acaaaacagggagtaaacctCgaaccagcgctaacagcaat	18	4	8	11	2	0	0	0	0	0	0	1	2	0	1	2	1	6	3	2	1	7	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_016018	exon7	c.C574T	p.R192X	AAACCTCGAACCA	.	50	11	58	0	.	.	T	133816130	C	T	133816130	4	4	8	1	0	0	0	0	0	1	0	0	11880	876	31	1	596	1	PHF20L1	8	133816130	Nonsense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	2003448	133816130	12547892	75	1152											
SLA	6503	hgsc.bcm.edu;bcgsc.ca	37	chr8	134062164	134062164	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cacccatggtaaactctggcCacacatattccagggatgta	12	9	8	12	0	1	0	0	0	1	0	2	1	2	1	3	3	1	2	3	3	4	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006748	exon3	c.G351A	p.V117V	TCTGGCCACACAT	.	76	4	64	0	.	.	T	134062164	C	T	134062164	2	4	8	1	0	0	0	0	0	0	0	1	14418	581	21	3		3	SLA	8	134062164	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	246034	134062164	12301858	76	1153											
TMC1	117531	hgsc.bcm.edu	37	chr9	75387387	75387387	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tgacaataaacgaacaattgGatggatgaatttcaggttgc	15	11	10	5	1	1	2	1	2	0	0	1	5	1	4	0	3	3	1	0	3	6	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TMC1,NS,carcinoma,0,1	TMC1	NM_138691	exon13	c.G800A	p.G267E	CAATTGGATGGAT	.	47	2	71	0	.	0	A	75387387	G	A	75387387	3	1	8	1	0	0	0	0	1	0	0	0	16044	1174	41	3	834	3	TMC1	9	75387387	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		75387387	65826044	77	1154											
PHYHD1	254295	bcgsc.ca	37	chr9	131704026	131704026	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagccctcgcccctccCgggtgaagctgtgggctgta	5	7	15	14	2	0	1	0	1	0	0	2	2	1	2	4	3	2	4	4	3	2	1	rs141466531		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PHYHD1	NM_174933	exon12	c.C888T	p.P296P	CCCTCCCGGGTGA	.	15	3	30	0	C|1.000;T|0.000	29	T	131704026	T	T	131704026	2	4	8	1	0	0	0	0	0	0	0	1	11913	639	23	1		1	PHYHD1	9	131704026	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	56316639	131704026	9509405	78	1155											
C9orf50	375759	broad.mit.edu	37	chr9	132377802	132377802	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtagcggagcgttgtgtcctGcagggtctcgtcagcgaatc	6	10	15	10	4	2	0	1	0	1	0	5	2	3	1	1	2	4	3	1	2	2	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	C9orf50	NM_199350	exon4	c.C841A	p.Q281K	TGTCCTGCAGGGT	.	48	3	69	0	.	25	T	132377802	G	T	132377802	3	4	8	1	0	0	0	0	1	0	0	0	2505	1328	46	3	470	3	C9orf50	9	132377802	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	673776	132377802	8835629	79	1156											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	17164817	17164817	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taacttcccattgtattaacAcatgtgcctccattctggca	10	14	5	12	0	1	0	0	0	1	0	3	0	3	0	3	1	3	2	3	1	3	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001081	exon6	c.T570C	p.C190C	ATTAACACATGTG	.	12	4	16	0	.	.	G	17164817	A	G	17164817	2	3	8	1	0	0	0	0	0	0	0	1	4074	157	6	4		4	CUBN	10	17164817	Silent	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09		17164817	118369930	80	1157											
ENTPD1	953	hgsc.bcm.edu	37	chr10	97599460	97599460	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gctttcagtatgggattgtgCtggatgcgggttcttctcac	5	15	13	8	1	3	0	2	0	2	0	4	2	3	2	0	3	2	4	0	3	1	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ENTPD1,NS,carcinoma,0,1	ENTPD1	NM_001164178	exon3	c.C193T	p.L65L	ATTGTGCTGGATG	.	50	2	66	0	.	0	T	97599460	C	T	97599460	2	4	8	1	0	0	0	0	0	0	0	1	5166	796	28	3		3	ENTPD1	10	97599460	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	80434643	97599460	37935287	81	1158											
TSSC4	10078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2424013	2424013	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gctgaagtggaagcactgtcCccgatggggctgcctgggga	7	7	17	10	1	0	1	0	1	0	0	1	4	1	3	3	5	2	3	3	5	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005706	exon2	c.C150T	p.S50S	ACTGTCCCCGATG	.	54	19	76	0	.	.	T	2424013	C	T	2424013	2	4	8	1	0	0	0	0	0	0	0	1	16728	610	22	3		3	TSSC4	11	2424013	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		2424013	132582503	82	1159											
HPS5	11234	hgsc.bcm.edu	37	chr11	18313248	18313248	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgaagaccacttgcaatggcGcatggagaacatatttgaaa	15	8	10	8	2	0	3	0	1	0	2	0	5	0	3	1	2	2	2	1	2	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HPS5,NS,carcinoma,0,1	HPS5	NM_181507	exon16	c.C2181T	p.C727C	AATGGCGCATGGA	.	37	2	54	0	.	0	A	18313248	G	A	18313248	2	1	8	1	0	0	0	0	0	0	0	1	7383	1079	38	1		1	HPS5	11	18313248	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	15889235	18313248	116693268	83	1160											
PEX16	9409	hgsc.bcm.edu	37	chr11	45939028	45939028	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cccagctctgacagctcgtgCgaatcggcgaatcgacctgg	8	7	12	14	5	1	1	0	1	1	0	4	4	1	1	2	2	3	2	2	2	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004813	exon2	c.G129A	p.S43S	CTCGTGCGAATCG	.	68	3	93	0	.	.	T	45939028	C	T	45939028	2	4	8	1	0	0	0	0	0	0	0	1	11791	755	27	1		1	PEX16	11	45939028	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	27625780	45939028	89067488	84	1161											
LRP4	4038	hgsc.bcm.edu;bcgsc.ca	37	chr11	46897416	46897416	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgtccacagtcagtccattgGgccatcctaggttgttgttg	6	14	11	10	0	1	0	1	0	0	0	4	0	4	0	4	2	0	3	4	2	1	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002334	exon26	c.C3638A	p.P1213H	CCATTGGGCCATC	.	48	4	62	0	.	.	T	46897416	G	T	46897416	3	4	8	1	0	0	0	0	1	0	0	0	9004	1232	43	3	2131	3	LRP4	11	46897416	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	958388	46897416	88109100	85	1162											
MYBPC3	4607	hgsc.bcm.edu;bcgsc.ca	37	chr11	47360898	47360898	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cttgtcaaacacccactcatCgctgtcacctgtgtcctctg	7	12	6	16	1	4	0	3	0	1	0	6	0	5	0	3	0	1	1	3	0	1	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000256	exon21	c.G2125A	p.D709N	ACTCATCGCTGTC	.	50	4	66	0	.	.	T	47360898	C	T	47360898	3	4	8	1	0	0	0	0	1	0	0	0	10061	884	31	1	1751	1	MYBPC3	11	47360898	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	463482	47360898	87645618	86	1163											
CD6	923	hgsc.bcm.edu	37	chr11	60780933	60780933	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaatagagaacaaggaatctCgggagctaatgctcctcatc	15	8	9	9	1	2	1	1	0	1	1	5	4	3	3	1	2	3	2	1	2	6	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CD6_ENST00000313421,caecum,carcinoma,0,2	CD6_ENST00000313421	NM_006725	exon7	c.C1189A	p.R397R	GAATCTCGGGAGC	.	45	2	40	0	.	0	A	60780933	C	A	60780933	2	1	8	1	0	0	0	0	0	0	0	1	3050	875	31	2		2	CD6	11	60780933	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	13420035	60780933	74225583	87	1164											
KCNK4	50801	broad.mit.edu	37	chr11	64060511	64060511	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgcgcagcaccacgctcctGgccctgctggcgctggtctt	4	9	12	16	3	1	0	0	0	1	0	2	0	2	0	3	3	3	5	3	3	0	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	KCNK4	NM_033310	exon2	c.G21A	p.L7L	GCTCCTGGCCCTG	.	68	5	77	0	.	22	A	64060511	G	A	64060511	2	1	8	1	0	0	0	0	0	0	0	1	8112	1335	47	3		3	KCNK4	11	64060511	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	3279578	64060511	70946005	88	1165											
ATG2A	23130	bcgsc.ca	37	chr11	64676552	64676552	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	actctccactgacagctccaGttcctctcccttctccgggg	5	11	7	18	1	3	1	0	1	3	0	8	1	5	1	5	2	1	2	5	2	0	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ATG2A	NM_015104	exon16	c.C2275A	p.L759M	GCTCCAGTTCCTC	.	51	5	84	0	.	133	T	64676552	T	T	64676552	3	4	8	1	0	0	0	0	1	0	0	0	1092	1020	36	3	3645	3	ATG2A	11	64676552	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	616041	64676552	70329964	89	1166											
MRPL48	51642	bcgsc.ca	37	chr11	73536794	73536794	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtcggccctacaagacaaagCccacccacggcattggaaag	13	4	10	14	2	0	1	0	0	0	1	1	2	0	2	3	3	2	1	3	3	4	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	MRPL48	NM_016055	exon4	c.C154T	p.P52S	ACAAAGCCCACCC	.	61	4	63	0	.	16	T	73536794	T	T	73536794	3	4	8	1	0	0	0	0	1	0	0	0	9861	739	26	3	168	3	MRPL48	11	73536794	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	8860242	73536794	61469722	90	1167											
PDGFD	80310	hgsc.bcm.edu	37	chr11	103870948	103870948	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tcctttcacctggatggtctCatctcttcggtacaagtctg	6	15	8	12	1	4	0	2	0	3	0	8	1	5	1	2	3	1	1	2	3	2	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PDGFD_ENST00000393158,NS,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon2	c.G160A	p.E54K	TGGTCTCATCTCT	.	45	2	82	0	.	0	T	103870948	C	T	103870948	3	4	8	1	0	0	0	0	1	0	0	0	11707	835	29	3	976	3	PDGFD	11	103870948	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	30334154	103870948	31135568	91	1168											
CHD4	1108	hgsc.bcm.edu	37	chr12	6680126	6680126	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tcacagcaactgggggaattCgggcaatggtagctgggagt	10	8	16	7	1	1	0	1	0	0	0	2	2	1	2	0	5	3	4	0	5	4	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CHD4_ENST00000357008,bladder,carcinoma,0,3	CHD4_ENST00000357008	NM_001273	exon39	c.G5630A	p.R1877Q	GGAATTCGGGCAA	.	30	2	43	0	.	0	T	6680126	C	T	6680126	3	4	8	1	0	0	0	0	1	0	0	0	3349	884	31	1	116	1	CHD4	12	6680126	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		6680126	127171769	92	1169											
PDE1B	5153	hgsc.bcm.edu	37	chr12	54964077	54964077	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaccaggcagcagatgAccatgccctgaggaccattg	11	7	11	12	0	0	4	0	3	0	1	0	5	0	5	4	2	3	2	4	2	1	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PDE1B,NS,carcinoma,0,1	PDE1B	NM_000924	exon6	c.A530T	p.D177V	CAGATGACCATGC	.	11	2	13	0	.	0	T	54964077	A	T	54964077	3	4	8	1	0	0	0	0	1	0	0	0	11681	275	10	5	605	5	PDE1B	12	54964077	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	48283951	54964077	78887818	93	1170											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	72024647	72024647	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gttcctgttaaatcaaaacgGcagaaacactgatccggttc	13	10	8	10	2	1	2	1	1	0	1	4	2	3	2	2	2	2	4	2	2	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_144982	exon17	c.C3558T	p.C1186C	AAAACGGCAGAAA	.	39	4	47	0	.	.	A	72024647	G	A	72024647	2	1	8	1	0	0	0	0	0	0	0	1	17691	1195	42	3		3	ZFC3H1	12	72024647	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	17060570	72024647	61827248	94	1171											
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	95416118	95416118	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagacctttgaaaaacaattCttcagtgatggtagcattca	14	12	8	7	0	3	3	2	2	1	1	3	4	3	3	1	1	2	2	1	1	4	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	NR2C1,NS,carcinoma,0,1	NR2C1	NM_003297	exon14	c.G1699T	p.E567X	ACAATTCTTCAGT	.	51	7	89	0	.	0	A	95416118	C	A	95416118	4	1	8	1	0	0	0	0	0	1	0	0	10670	922	32	3	116	3	NR2C1	12	95416118	Nonsense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	23391471	95416118	38435777	95	1172											
SELPLG	6404	hgsc.bcm.edu;bcgsc.ca	37	chr12	109017495	109017495	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtgcctccatggctgCtggtgcagtggtctgtgcct	2	13	15	11	0	2	0	0	0	2	0	3	0	3	0	3	4	4	3	3	4	0	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001206609	exon2	c.G637A	p.A213T	TGGCTGCTGGTGC	.	67	4	88	0	.	.	T	109017495	C	T	109017495	3	4	8	1	0	0	0	0	1	0	0	0	14074	797	28	3	653	3	SELPLG	12	109017495	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	13601377	109017495	24834400	96	1173											
MED13L	23389	hgsc.bcm.edu	37	chr12	116422008	116422008	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatggcggcaaacttgcGcataaagtttgagtctggaa	11	10	14	6	2	1	2	0	2	1	0	1	3	1	3	0	4	2	3	0	4	4	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MED13L,NS,carcinoma,0,1	MED13L	NM_015335	exon20	c.C4508T	p.A1503V	ACTTGCGCATAAA	.	39	2	74	1	.	0	A	116422008	G	A	116422008	3	1	8	1	0	0	0	0	1	0	0	0	9481	1087	38	1	2172	1	MED13L	12	116422008	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	7404513	116422008	17429887	97	1174											
SETD8	387893	hgsc.bcm.edu	37	chr12	123879692	123879692	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctggtaccttttccaaacCaaaaatctgaagcagcagaa	15	8	6	12	0	1	2	0	1	1	1	2	2	2	2	4	1	4	3	4	1	6	3	rs371558123	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020382	exon4	c.C388A	p.Q130K	CCAAACCAAAAAT	.	79	4	126	0	.	.	A	123879692	C	A	123879692	3	1	8	1	0	0	0	0	1	0	0	0	14191	595	21	3	402	3	SETD8	12	123879692	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	7457684	123879692	9972203	98	1175											
POLE	5426	hgsc.bcm.edu	37	chr12	133244235	133244235	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtaggctttccggcagtaatCtaagcacgacggagatgggc	10	8	14	9	3	1	1	0	0	1	1	2	3	2	1	1	4	1	5	1	4	3	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	POLE,NS,carcinoma,0,1	POLE	NM_006231	exon21	c.2174-1G>T	.	AGTAATCTAAGCA	.	23	3	40	0	.	0	A	133244235	C	A	133244235	5	1	8	1	0	0	0	0	0	0	1	0	12244	927	32	3	4807	3	POLE	12	133244235	Splice_Site	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	9364543	133244235	607660	99	1176											
HSPA2	3306	hgsc.bcm.edu	37	chr14	65008064	65008064	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaggacgcaggcaccatcaCggggctcaatgtgctgcgca	10	5	13	13	3	2	0	2	0	0	0	2	1	2	1	1	4	2	5	1	4	2	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HSPA2,NS,carcinoma,0,1	HSPA2	NM_021979	exon1	c.C497T	p.T166M	CCATCACGGGGCT	.	29	2	52	1	.	0	T	65008064	C	T	65008064	3	4	8	1	0	0	0	0	1	0	0	0	7454	536	19	1	499	1	HSPA2	14	65008064	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		65008064	42341476	100	1177											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33795931	33795931	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccaacacaggtgaaaatggcGgcgaaggggtgagtacccga	13	4	15	9	3	0	2	0	2	0	0	0	4	0	2	2	5	2	1	2	5	5	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	RYR3,NS,carcinoma,0,1	RYR3	NM_001243996	exon3	c.G271A	p.G91S	AATGGCGGCGAAG	.	57	13	88	0	.	0	A	33795931	G	A	33795931	3	1	8	1	0	0	0	0	1	0	0	0	13822	1116	39	1	281	1	RYR3	15	33795931	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		33795931	68735461	101	1178											
RTF1	23168	hgsc.bcm.edu	37	chr15	41749983	41749983	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagacctcatgggagatgagGaagacagggcccgtctggaa	13	5	15	8	1	2	4	1	1	1	3	2	7	2	6	2	4	0	0	2	4	3	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_015138	exon4	c.G571T	p.E191X	GATGAGGAAGACA	.	76	4	86	0	.	.	T	41749983	G	T	41749983	4	4	8	1	0	0	0	0	0	1	0	0	13773	1175	41	3	585	3	RTF1	15	41749983	Nonsense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	7954052	41749983	60781409	102	1179											
TSC2	7249	hgsc.bcm.edu	37	chr16	2100432	2100432	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgtggcctcaacaatcGcatccggatgatagggcaga	12	7	13	9	2	1	2	1	1	0	1	3	4	2	4	2	4	1	2	2	4	4	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TSC2_ENST00000219476,rectum,carcinoma,0,2	TSC2_ENST00000219476	NM_001114382	exon3	c.G170A	p.R57H	ACAATCGCATCCG	.	46	2	58	0	.	0	A	2100432	G	A	2100432	3	1	8	1	0	0	0	0	1	0	0	0	16667	1087	38	1	176	1	TSC2	16	2100432	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		2100432	88254321	103	1180											
CASKIN1	57524	hgsc.bcm.edu	37	chr16	2239059	2239059	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggccgtttttagctgCgaggtgcaaagggctggtgc	6	11	17	7	2	0	0	0	0	0	0	0	2	0	0	1	4	4	4	1	4	2	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CASKIN1_ENST00000382453,NS,carcinoma,0,2	CASKIN1_ENST00000382453	NM_020764	exon6	c.G586A	p.A196T	TAGCTGCGAGGTG	.	44	2	68	0	.	0	T	2239059	C	T	2239059	3	4	8	1	0	0	0	0	1	0	0	0	2684	768	27	1	3769	1	CASKIN1	16	2239059	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	138627	2239059	88115694	104	1181											
KIAA0430	9665	hgsc.bcm.edu	37	chr16	15706433	15706433	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaatacatgaggcactGcttctaataactcaatcagc	13	10	6	12	0	3	1	2	1	1	0	3	1	3	1	1	1	5	3	1	1	5	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KIAA0430,NS,carcinoma,0,1	KIAA0430	NM_014647	exon17	c.C3455T	p.A1152V	GGCACTGCTTCTA	.	48	2	60	0	.	0	A	15706433	G	A	15706433	3	1	8	1	0	0	0	0	1	0	0	0	8219	1319	46	3	1817	3	KIAA0430	16	15706433	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	13467374	15706433	74648320	105	1182											
ABCC6	368	broad.mit.edu	37	chr16	16315466	16315466	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtcccctgcctcccccGaacattgcctggttccaggc	4	9	9	19	1	0	0	0	0	0	0	3	1	3	0	8	2	3	1	8	2	1	2	rs71390963	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ABCC6	NM_001079528	exon2	c.C259A	p.R87R	TCCCCCGAACATT	.	91	3	107	0	CAC|0.500;GAA|0.500	110	T	16315466	G	T	16315466	2	4	8	1	0	0	0	0	0	0	0	1	57	1057	37	2		2	ABCC6	16	16315466	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	609033	16315466	74039287	106	1183											
HS3ST4	9951	hgsc.bcm.edu	37	chr16	26147016	26147016	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacaaatgaggctcccaagcGcattcactccatggccaagg	12	6	10	13	1	1	1	1	1	0	0	3	2	3	1	3	3	1	2	3	3	3	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HS3ST4,NS,carcinoma,0,1	HS3ST4	NM_006040	exon2	c.G818A	p.R273H	CCAAGCGCATTCA	.	35	2	58	0	.	0	A	26147016	G	A	26147016	3	1	8	1	0	0	0	0	1	0	0	0	7408	1087	38	1	824	1	HS3ST4	16	26147016	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	9831550	26147016	64207737	107	1184											
CTCF	10664	hgsc.bcm.edu	37	chr16	67650656	67650657	+	Frame_Shift_Ins	INS	-	-	CT																															cctttctctaggtactcgtcINSctcacaagtgcccagactgc																								novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006565	exon5	c.961_962insCT	p.P321fs	ACTCGTCCTCACA	.	48	13	64	0	.	.	CT	67650657	-	CT	67650656	7	5	8	1	0	1	1	0	0	0	0	0	4024	855	30	0	971	0	CTCF	16	67650656	Frame_Shift_Ins	INS	-	TCGA-W5-AA2G-01A-11D-A417-09	41503640	67650656	22704097	108	1185											
RLTPR	146206	hgsc.bcm.edu	37	chr16	67681421	67681421	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtccccagagactttgtcCgacgactggcccaggcgctg	6	8	13	14	3	0	1	0	0	0	1	2	4	2	1	4	3	0	1	4	3	0	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001013838	exon11	c.C787T	p.R263X	TTTGTCCGACGAC	.	80	4	79	0	.	.	T	67681421	C	T	67681421	4	4	8	1	0	0	0	0	0	1	0	0	13446	644	23	1	829	1	RLTPR	16	67681421	Nonsense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	30765	67681421	22673332	109	1186											
SMPD3	55512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	68395639	68395639	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaaacgccaggtactccctgCggccctcctcactctccagg	7	7	9	18	2	2	0	1	0	1	0	5	1	4	0	5	3	3	1	5	3	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_018667	exon8	c.G1733A	p.R578H	TCCCTGCGGCCCT	.	66	4	67	0	.	.	T	68395639	C	T	68395639	3	4	8	1	0	0	0	0	1	0	0	0	14860	768	27	1	242	1	SMPD3	16	68395639	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	714218	68395639	21959114	110	1187											
ZNF821	55565	bcgsc.ca	37	chr16	71894006	71894006	+	Missense_Mutation	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccacttacaggcagcTggaagaagttcatttcagct	11	9	8	13	0	2	1	2	0	0	1	2	2	2	2	3	2	3	4	3	2	3	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ZNF821	NM_001201553	exon7	c.A1154G	p.Q385R	GGCAGCTGGAAGA	.	17	3	31	0	.	25	C	71894006	C	C	71894006	3	2	8	1	0	0	0	0	1	0	0	0	18225	1580	55	4	88	4	ZNF821	16	71894006	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	3498367	71894006	18460747	111	1188											
ZNF18	7566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	11896084	11896084	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcatctgattctgagaactgGgagtcctcggccttcgccag	7	10	12	12	2	2	2	0	2	2	1	5	4	3	3	3	2	1	1	3	2	1	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ZNF18	NM_144680	exon4	c.C63T	p.S21S	GAACTGGGAGTCC	.	31	4	63	1	.	42	A	11896084	G	A	11896084	2	1	8	1	0	0	0	0	0	0	0	1	17805	1219	43	3		3	ZNF18	17	11896084	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		11896084	69299126	112	1189											
ALDH3A1	218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	19645434	19645434	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tcatgatgatcttccccaccCccgtgctgcccgtgtacagg	6	10	9	16	2	2	2	1	2	1	0	3	2	3	2	5	1	3	2	5	1	1	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001135168	exon4	c.G572C	p.G191A	CCCACCCCCGTGC	.	14	6	16	0	.	.	G	19645434	C	G	19645434	3	3	8	1	0	0	0	0	1	0	0	0	494	623	22	5	817	5	ALDH3A1	17	19645434	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	7749350	19645434	61549776	113	1190											
C17orf78	284099	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	35746204	35746204	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caatgcctaggagccaggaaGctgtgccaatgccagtggtt	10	8	13	10	0	0	0	0	0	0	0	0	2	0	2	4	3	5	2	4	3	4	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_173625	exon6	c.G657T	p.K219N	CAGGAAGCTGTGC	.	29	4	33	0	.	.	T	35746204	G	T	35746204	3	4	8	1	0	0	0	0	1	0	0	0	1893	962	34	3	679	3	C17orf78	17	35746204	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	16100770	35746204	45449006	114	1191											
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38128387	38128387	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ccttgcccttcacagatattCcacatatctgcaatgataac	12	12	4	13	0	2	2	1	1	1	1	3	2	3	2	3	0	3	1	3	0	4	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_178171	exon6	c.C661A	p.P221T	GATATTCCACATA	.	42	12	58	0	.	.	A	38128387	C	A	38128387	3	1	8	1	0	0	0	0	1	0	0	0	6857	855	30	3	679	3	GSDMA	17	38128387	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	2382183	38128387	43066823	115	1192											
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	40344493	40344493	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctatcgccccagctagctCttcaccatcagtctccaggc	8	9	7	17	1	4	0	2	0	2	0	6	0	4	0	4	1	3	3	4	1	2	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001142623	exon5	c.G655T	p.E219X	CTAGCTCTTCACC	.	36	10	51	0	.	.	A	40344493	C	A	40344493	4	1	8	1	0	0	0	0	0	1	0	0	6411	922	32	3	1050	3	GHDC	17	40344493	Nonsense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	2216106	40344493	40850717	116	1193											
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu	37	chr17	40823452	40823452	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggtacacagcagctcctgccGttggctcaacgcggaaatct	9	8	11	13	3	2	0	1	0	1	0	3	1	3	1	2	3	5	5	2	3	3	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PLEKHH3,colon,carcinoma,0,1	PLEKHH3	NM_024927	exon8	c.C1201T	p.R401W	CCTGCCGTTGGCT	.	52	3	90	0	.	0	A	40823452	G	A	40823452	3	1	8	1	0	0	0	0	1	0	0	0	12126	1144	40	1	1204	1	PLEKHH3	17	40823452	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	478959	40823452	40371758	117	1194											
BRCA1	672	hgsc.bcm.edu	37	chr17	41219699	41219699	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtggtgttttctggcaaacTtgtacacgagcatctgaaat	10	14	10	7	1	2	1	0	1	2	0	2	2	2	1	0	2	3	4	0	2	3	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	BRCA1,NS,carcinoma,0,1	BRCA1	NM_007300	exon17	c.A5063C	p.K1688T	GCAAACTTGTACA	.	42	2	47	0	.	0	G	41219699	T	G	41219699	3	3	8	1	0	0	0	0	1	0	0	0	1500	1609	56	4	623	4	BRCA1	17	41219699	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	396247	41219699	39975511	118	1195											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42294007	42294007	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgaacttggagctgtCattggatggaaggttgttct	7	16	14	4	0	2	1	1	1	1	0	2	4	2	4	0	5	2	4	0	5	2	6	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_014233	exon3	c.G124T	p.D42Y	AGCTGTCATTGGA	.	47	12	61	0	.	.	A	42294007	C	A	42294007	3	1	8	1	0	0	0	0	1	0	0	0	16970	826	29	3	2246	3	UBTF	17	42294007	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	1074308	42294007	38901203	119	1196											
SPATA20	64847	bcgsc.ca	37	chr17	48625960	48625960	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggccaggaaggaaaaCaagccgattttcctctcagg	14	6	11	10	1	1	0	1	0	1	0	3	4	2	2	3	4	2	0	3	4	5	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	SPATA20	NM_022827	exon4	c.C342A	p.N114K	GGAAAACAAGCCG	.	55	4	74	0	.	59	A	48625960	A	A	48625960	3	1	8	1	0	0	0	0	1	0	0	0	15062	477	17	3	356	3	SPATA20	17	48625960	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	6331953	48625960	32569250	120	1197											
PCTP	58488	hgsc.bcm.edu	37	chr17	53852193	53852193	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacccgggtggccaaattccGtcctggctcattaactgggc	8	9	11	13	2	1	0	1	0	0	0	3	0	3	0	4	4	2	1	4	4	3	2	rs371579881	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PCTP,NS,malignant_melanoma,+1,1	PCTP	NM_021213	exon5	c.G552T	p.P184P	AATTCCGTCCTGG	.	66	4	78	0	.	+1	T	53852193	G	T	53852193	2	4	8	1	0	0	0	0	0	0	0	1	11654	1132	40	2		2	PCTP	17	53852193	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	5226233	53852193	27343017	121	1198											
LPHN1	22859	bcgsc.ca	37	chr19	14267774	14267774	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gctgcggtagtcaatggcagCcgcgatgcccaccaccaggg	8	5	14	14	3	1	0	1	0	0	0	1	1	1	0	4	3	3	3	4	3	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	LPHN1	NM_001008701	exon16	c.G2944A	p.A982T	TGGCAGCCGCGAT	.	46	4	63	0	.	107	T	14267774	T	T	14267774	3	4	8	1	0	0	0	0	1	0	0	0	8960	739	26	3	1516	3	LPHN1	19	14267774	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09		14267774	44861209	122	1199											
SLC1A6	6511	broad.mit.edu;bcgsc.ca	37	chr19	15063766	15063766	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagtccacggcaatgatgagCgtgatgtcttccgtgggcaa	9	9	13	10	3	1	3	0	3	1	0	3	3	3	3	2	2	1	2	2	2	2	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	SLC1A6	NM_005071	exon8	c.G1473A	p.T491T	GATGAGCGTGATG	.	7	3	28	0	.	111	T	15063766	C	T	15063766	2	4	8	1	0	0	0	0	0	0	0	1	14491	755	27	1		1	SLC1A6	19	15063766	Silent	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	795992	15063766	44065217	123	1200											
OR10H4	126541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16060302	16060302	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catggggatgatggtgacaaCgatagttttccacctcactt	10	12	10	9	1	1	2	1	2	0	0	2	4	2	3	2	3	1	1	2	3	2	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001004465	exon1	c.C485T	p.T162M	TGACAACGATAGT	.	37	10	68	0	.	.	T	16060302	C	T	16060302	3	4	8	1	0	0	0	0	1	0	0	0	10956	536	19	1	487	1	OR10H4	19	16060302	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	996536	16060302	43068681	124	1201											
ZNF43	7594	hgsc.bcm.edu	37	chr19	21991811	21991811	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttgccacattcttcacatGtgtagggtttctctccagta	7	16	7	11	0	3	0	1	0	2	0	5	0	4	0	2	1	1	3	2	1	2	6	rs149679417		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ZNF43,NS,carcinoma,0,2	ZNF43	NM_001256653	exon4	c.C1055A	p.T352K	TCACATGTGTAGG	.	43	3	51	1	.	0	T	21991811	G	T	21991811	3	4	8	1	0	0	0	0	1	0	0	0	17960	1377	48	3	1405	3	ZNF43	19	21991811	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	5931509	21991811	37137172	125	1202											
ZNF546	339327	bcgsc.ca	37	chr19	40520472	40520472	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaacttgctcgacatcGtagaattcatactggtgaga	12	11	10	8	2	1	3	1	1	0	3	3	5	1	3	0	1	4	3	0	1	4	4	rs199852460		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ZNF546,NS,carcinoma,0,2	ZNF546	NM_178544	exon7	c.G1295A	p.R432H	GACATCGTAGAAT	.	43	4	51	0	.	93	A	40520472	A	A	40520472	3	1	8	1	0	0	0	0	1	0	0	0	18035	1145	40	1	1313	1	ZNF546	19	40520472	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	18528661	40520472	18608511	126	1203											
PSG6	5675	hgsc.bcm.edu	37	chr19	43421937	43421937	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgcagggaggggctgagaggGgtcccatggtctctgctgtc	5	9	18	9	0	1	1	0	1	1	1	4	3	2	2	1	6	2	3	1	6	0	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001031850	exon1	c.C8T	p.P3L	GAGAGGGGTCCCA	.	75	4	122	0	.	.	A	43421937	G	A	43421937	3	1	8	1	0	0	0	0	1	0	0	0	12708	1232	43	3	1362	3	PSG6	19	43421937	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	2901465	43421937	15707046	127	1204											
RUVBL2	10856	broad.mit.edu;bcgsc.ca	37	chr19	49518928	49518928	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggagtaccaggacgccttcCtcttcaacgaactcagtaag	12	8	9	12	2	3	0	2	0	1	0	4	3	4	2	3	2	3	2	3	2	4	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	RUVBL2	NM_006666	exon14	c.C1351A	p.L451I	GCCTTCCTCTTCA	.	18	3	28	0	.	31	A	49518928	C	A	49518928	3	1	8	1	0	0	0	0	1	0	0	0	13805	681	24	3	1405	3	RUVBL2	19	49518928	Missense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	6096991	49518928	9610055	128	1205											
NLRP8	126205	hgsc.bcm.edu	37	chr19	56477640	56477640	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcggtgttttgacggggaacCagcatctgagatacttggaa	10	11	13	7	2	1	2	0	2	1	1	2	5	1	4	1	4	3	2	1	4	3	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_176811	exon5	c.C2275T	p.Q759X	GGGAACCAGCATC	.	88	4	87	0	.	.	T	56477640	C	T	56477640	4	4	8	1	0	0	0	0	0	1	0	0	10530	595	21	3	2293	3	NLRP8	19	56477640	Nonsense_Mutation	SNP	C	TCGA-W5-AA2G-01A-11D-A417-09	6958712	56477640	2651343	129	1206											
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu	37	chr20	37191223	37191223	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcagccacatttcctaGaatttttgctttcccttggc	6	17	6	12	0	1	1	1	0	0	1	3	1	3	1	3	1	2	2	3	1	2	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020336	exon24	c.G3580T	p.E1194X	TTCCTAGAATTTT	.	67	4	106	0	.	.	T	37191223	G	T	37191223	4	4	8	1	0	0	0	0	0	1	0	0	13067	943	33	3	3670	3	RALGAPB	20	37191223	Nonsense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		37191223	25834297	130	1207											
CRKL	1399	hgsc.bcm.edu	37	chr22	21304043	21304043	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggatgaatataaatggccaGtgggaaggcgaagtgaacgg	15	6	16	4	2	0	2	0	2	0	0	0	5	0	4	1	5	1	0	1	5	7	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CRKL,NS,carcinoma,0,1	CRKL	NM_005207	exon3	c.G822T	p.Q274H	TGGCCAGTGGGAA	.	52	3	85	0	.	0	T	21304043	G	T	21304043	3	4	8	1	0	0	0	0	1	0	0	0	3908	1020	36	3	832	3	CRKL	22	21304043	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		21304043	30000523	131	1208											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	37098604	37098604	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttaaaagcatttgaacaccTcgatcaaacagccccataat	16	9	5	11	1	1	1	1	1	0	0	2	2	1	1	3	0	4	2	3	0	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006078	exon1	c.A18C	p.R6R	AACACCTCGATCA	.	71	5	84	0	.	.	G	37098604	T	G	37098604	2	3	8	1	0	0	0	0	0	0	0	1	2575	1538	54	4		4	CACNG2	22	37098604	Silent	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	15794561	37098604	14205962	132	1209											
EFCAB6	64800	broad.mit.edu	37	chr22	43985975	43985975	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttagcagatgggtcagcTccccttcggtaagagaacat	10	11	11	9	1	1	2	1	0	0	2	3	3	2	2	2	2	3	4	2	2	3	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	EFCAB6	NM_022785	exon24	c.A3011G	p.E1004G	GTCAGCTCCCCTT	.	52	3	65	0	.	177	C	43985975	T	C	43985975	3	2	8	1	0	0	0	0	1	0	0	0	4965	1551	54	4	1530	4	EFCAB6	22	43985975	Missense_Mutation	SNP	T	TCGA-W5-AA2G-01A-11D-A417-09	6887371	43985975	7318591	133	1210											
PRKX	5613	hgsc.bcm.edu;bcgsc.ca	37	chrX	3573313	3573313	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tggagtgcaggtactcgatgGcacagatgatctctgcagag	10	9	14	8	1	1	3	0	1	1	2	3	5	1	4	0	3	3	4	0	3	1	1	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005044	exon3	c.C476T	p.A159V	TCGATGGCACAGA	.	56	4	67	0	.	.	A	3573313	G	A	3573313	3	1	8	1	0	0	0	0	1	0	0	0	12579	1203	42	3	624	3	PRKX	23	3573313	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09		3573313	151697247	134	1211											
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	18924875	18924875	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tgcgtgaggacggcaatgctGatgtcctgcccactggcctc	6	9	13	13	2	0	2	0	2	0	0	2	3	1	3	3	3	3	2	3	3	1	0	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000292	exon24	c.C2655T	p.I885I	AATGCTGATGTCC	.	80	7	94	0	.	.	A	18924875	G	A	18924875	2	1	8	1	0	0	0	0	0	0	0	1	11892	1280	45	3		3	PHKA2	23	18924875	Silent	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	15351562	18924875	136345685	135	1212											
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	75650880	75650880	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttattatgggcaaccatgccAgggagtctgcagtctgggcc	8	10	13	10	0	2	0	0	0	2	0	2	1	2	1	3	3	3	2	3	3	3	2	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020932	exon1	c.A2557T	p.R853W	CATGCCAGGGAGT	.	38	10	64	0	.	.	T	75650880	A	T	75650880	3	4	8	1	0	0	0	0	1	0	0	0	9235	179	7	5	2559	5	MAGEE1	23	75650880	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	56726005	75650880	79619680	136	1213											
BRWD3	254065	broad.mit.edu;bcgsc.ca	37	chrX	79946606	79946606	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tattgaggtcagttggataaGcaactacagtacaatacaag	16	10	9	6	0	1	1	1	1	0	0	1	2	1	2	0	2	5	3	0	2	8	7	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	BRWD3	NM_153252	exon31	c.C3548A	p.A1183D	GGATAAGCAACTA	.	138	7	225	2	.	251	T	79946606	G	T	79946606	3	4	8	1	0	0	0	0	1	0	0	0	1528	971	34	3	1904	3	BRWD3	23	79946606	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	4295726	79946606	75323954	137	1214											
NXF5	55998	hgsc.bcm.edu	37	chrX	101096287	101096287	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgggagacattgtaccGtttgttcatggtcagctgca	7	14	12	8	1	2	1	2	0	0	1	2	2	2	1	1	2	4	6	1	2	1	5	rs199849270	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_032946	exon7	c.C337T	p.R113W	TGTACCGTTTGTT	.	161	18	215	0	.	.	A	101096287	G	A	101096287	3	1	8	1	0	0	0	0	1	0	0	0	10834	1144	40	1	800	1	NXF5	23	101096287	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	21149681	101096287	54174273	138	1215											
ZMAT1	84460	hgsc.bcm.edu	37	chrX	101153157	101153157	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attttgttccccatgcatttGaaaataaaaactaacatttt	15	16	3	7	0	0	1	0	1	0	0	1	1	1	1	2	0	3	2	2	0	6	8	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001011657	exon4	c.C265A	p.Q89K	GCATTTGAAAATA	.	99	4	99	0	.	.	T	101153157	G	T	101153157	3	4	8	1	0	0	0	0	1	0	0	0	17749	1299	45	3	1667	3	ZMAT1	23	101153157	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	56870	101153157	54117403	139	1216											
GPRASP1	9737	hgsc.bcm.edu;bcgsc.ca	37	chrX	101910213	101910213	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctagcagtaaatccagaccaAggactgatggggagcgtatt	13	8	12	8	1	0	2	0	1	0	1	1	4	1	4	2	3	2	3	2	3	5	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001099411	exon3	c.A1372G	p.R458G	AGACCAAGGACTG	.	65	4	81	0	.	.	G	101910213	A	G	101910213	3	3	8	1	0	0	0	0	1	0	0	0	6763	63	3	4	1374	4	GPRASP1	23	101910213	Missense_Mutation	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	757056	101910213	53360347	140	1217											
PRPS1	5631	hgsc.bcm.edu	37	chrX	106885652	106885652	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gagccggctgtcctaaagtgGataagggagaatatctctga	12	9	13	7	1	1	2	0	1	1	1	3	5	2	3	2	3	1	1	2	3	5	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002764	exon4	c.G462T	p.W154C	AAAGTGGATAAGG	.	90	5	95	0	.	.	T	106885652	G	T	106885652	3	4	8	1	0	0	0	0	1	0	0	0	12630	1183	41	3	476	3	PRPS1	23	106885652	Missense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	4975439	106885652	48384908	141	1218											
OR13H1	347468	ucsc.edu	37	chrX	130678378	130678378	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccttggctttggccacagcaGagtgcctcctactggctgcc	5	10	11	15	0	0	1	0	0	0	1	1	1	1	1	5	3	4	3	5	3	1	3	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	OR13H1	NM_001004486	exon1	c.G331T	p.E111X	ACAGCAGAGTGCC	.	35	4	38	0	.	41	T	130678378	G	T	130678378	4	4	8	1	0	0	0	0	0	1	0	0	10991	943	33	3	333	3	OR13H1	23	130678378	Nonsense_Mutation	SNP	G	TCGA-W5-AA2G-01A-11D-A417-09	23792726	130678378	24592182	142	1219											
F9	2158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	138642998	138642998	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtgttgaaactggtgttaaAattacagttgtcgcaggtaa	12	14	11	4	1	0	1	0	1	0	0	1	1	0	1	0	2	2	5	0	2	5	5	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000133	exon7	c.A822G	p.K274K	TGTTAAAATTACA	.	136	15	163	0	.	.	G	138642998	A	G	138642998	2	3	8	1	0	0	0	0	0	0	0	1	5382	11	1	4		4	F9	23	138642998	Silent	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	7964620	138642998	16627562	143	1220											
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	chrX	138899055	138899055	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtaacagttataacaaagaaAagtggaagtccactggtaac	18	8	9	6	0	0	1	0	0	0	1	1	2	1	2	1	2	3	3	1	2	8	4	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ATP11C	NM_001010986	exon4	c.T294C	p.L98L	AAAGAAAAGTGGA	.	190	6	232	0	.	319	G	138899055	A	G	138899055	2	3	8	1	0	0	0	0	0	0	0	1	1120	1	1	4		4	ATP11C	23	138899055	Silent	SNP	A	TCGA-W5-AA2G-01A-11D-A417-09	256057	138899055	16371505	144	1221											
CAMTA1	23261	hgsc.bcm.edu	37	chr1	7737779	7737779	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctcccagcacgactGgctgtcgttggacggtaaga	7	9	11	14	3	0	1	0	0	0	1	3	3	2	2	3	3	1	4	3	3	1	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CAMTA1,colon,carcinoma,0,1	CAMTA1	NM_015215	exon11	c.G2900T	p.W967L	ACGACTGGCTGTC	.	29	2	29	0	.	0	T	7737779	G	T	7737779	3	4	9	1	0	0	0	0	1	0	0	0	2631	1357	47	3	2942	3	CAMTA1	1	7737779	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		7737779	241512842	1	1222											
FBXO2	26232	hgsc.bcm.edu	37	chr1	11710798	11710798	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acgcggcggcggccgccgccTcctcctcctgctggtcctcc	1	7	12	21	6	0	0	0	0	0	0	5	0	5	0	8	4	1	1	8	4	0	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FBXO2,NS,carcinoma,0,1	FBXO2	NM_012168	exon2	c.A116C	p.E39A	GCCGCCTCCTCCT	.	8	3	8	1	.	0	G	11710798	T	G	11710798	3	3	9	1	0	0	0	0	1	0	0	0	5765	1551	54	4	794	4	FBXO2	1	11710798	Missense_Mutation	SNP	T	TCGA-W5-AA2H-01A-31D-A417-09	3973019	11710798	237539823	2	1223											
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	26691514	26691514	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatggagttgacagggggacAggggcagaaagccaaggggc	12	3	20	6	0	0	2	0	1	0	1	0	5	0	4	1	7	1	2	1	7	2	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_173574	exon4	c.T523C	p.C175R	GGGGACAGGGGCA	.	31	4	28	0	.	.	G	26691514	A	G	26691514	3	3	9	1	0	0	0	0	1	0	0	0	18146	188	7	4	1003	4	ZNF683	1	26691514	Missense_Mutation	SNP	A	TCGA-W5-AA2H-01A-31D-A417-09	14980716	26691514	222559107	3	1224											
GBP7	388646	hgsc.bcm.edu;bcgsc.ca	37	chr1	89616212	89616212	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttttggaaagaaatgcctGatccactccctgggcttgtt	8	14	10	9	0	0	2	0	1	0	1	2	3	2	3	3	2	1	3	3	2	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_207398	exon6	c.C672A	p.I224I	ATGCCTGATCCAC	.	68	4	55	0	.	.	T	89616212	G	T	89616212	2	4	9	1	0	0	0	0	0	0	0	1	6319	1280	45	3		3	GBP7	1	89616212	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	62924698	89616212	159634409	4	1225											
CLCC1	23155	hgsc.bcm.edu	37	chr1	109493041	109493041	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagcaacagacattcacaaaGgagcaaagaacacagcatcc	19	3	7	12	0	1	2	1	0	0	2	2	3	2	3	1	1	5	3	1	1	4	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CLCC1_ENST00000369971,right_upper_lobe,carcinoma,0,2	CLCC1_ENST00000369971	NM_001048210	exon2	c.C19A	p.L7I	CACAAAGGAGCAA	.	24	2	14	0	.	0	T	109493041	G	T	109493041	3	4	9	1	0	0	0	0	1	0	0	0	3483	1000	35	3	1676	3	CLCC1	1	109493041	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	19876829	109493041	139757580	5	1226											
ECM1	1893	hgsc.bcm.edu	37	chr1	150484858	150484858	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cccttgacaaatactgtgacCgggagtatgctgtgaagacc	11	9	11	10	1	0	4	0	3	0	1	0	5	0	5	3	1	2	2	3	1	4	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ECM1,colon,carcinoma,0,1	ECM1	NM_001202858	exon8	c.C1195T	p.R399W	TGTGACCGGGAGT	.	50	2	29	0	.	0	T	150484858	C	T	150484858	3	4	9	1	0	0	0	0	1	0	0	0	4923	643	23	1	1144	1	ECM1	1	150484858	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	40991817	150484858	98765763	6	1227											
SPTA1	6708	hgsc.bcm.edu	37	chr1	158618388	158618388	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagatctgagccagggtctgCagcactgagggcctggcatt	8	8	14	11	0	2	3	0	2	2	1	2	3	2	3	2	3	3	3	2	3	0	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_003126	exon26	c.G3625A	p.A1209T	GGTCTGCAGCACT	.	34	4	23	0	.	.	T	158618388	C	T	158618388	3	4	9	1	0	0	0	0	1	0	0	0	15172	710	25	3	3742	3	SPTA1	1	158618388	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	8133530	158618388	90632233	7	1228											
DARC	2532	hgsc.bcm.edu	37	chr1	159175339	159175339	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtgaatgattccttccCagatggagactatggtgcca	9	12	12	8	0	0	4	0	2	0	2	2	5	2	4	3	3	1	0	3	3	2	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	DARC_ENST00000368121,NS,neuroblastoma,0,1	DARC_ENST00000368121	NM_001122951	exon1	c.C116T	p.P39L	CCTTCCCAGATGG	.	27	2	18	0	.	0	T	159175339	C	T	159175339	3	4	9	1	0	0	0	0	1	0	0	0	4264	594	21	3	143	3	DARC	1	159175339	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	556951	159175339	90075282	8	1229											
FAIM3	9214	hgsc.bcm.edu	37	chr1	207087180	207087180	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gctccgcaggcatagactccGctgtcactttctgtcagctg	6	11	10	14	2	3	1	2	0	1	1	5	1	5	1	2	1	1	5	2	1	1	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FAIM3,NS,carcinoma,0,2	FAIM3	NM_005449	exon2	c.C297T	p.S99S	GACTCCGCTGTCA	.	25	2	29	0	.	0	A	207087180	G	A	207087180	2	1	9	1	0	0	0	0	0	0	0	1	5408	1078	38	1		1	FAIM3	1	207087180	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	47911841	207087180	42163441	9	1230											
TRAF5	7188	hgsc.bcm.edu	37	chr1	211533365	211533365	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgagtgcatcctgtcagtttCgaaaggaaaaatgcctttat	12	13	9	7	1	1	1	1	1	0	0	3	3	2	2	2	1	2	2	2	1	4	3	rs200980823		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TRAF5,NS,carcinoma,0,2	TRAF5	NM_004619	exon5	c.C490T	p.R164X	CAGTTTCGAAAGG	.	44	2	43	0	0.001	0	T	211533365	C	T	211533365	4	4	9	1	0	0	0	0	0	1	0	0	16505	876	31	1	504	1	TRAF5	1	211533365	Nonsense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	4446185	211533365	37717256	10	1231											
GPATCH2	55105	bcgsc.ca	37	chr1	217604610	217604610	+	Silent	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagagatccccttgccatcTcgtccaaggcctgacccagg	8	8	9	16	1	2	2	1	1	1	1	5	3	4	2	6	2	1	0	6	2	1	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GPATCH2,NS,carcinoma,-2,1	GPATCH2	NM_018040	exon10	c.A1464G	p.R488R	GCCATCTCGTCCA	.	57	4	42	0	.	53	C	217604610	C	C	217604610	2	2	9	1	0	0	0	0	0	0	0	1	6631	1538	54	4		4	GPATCH2	1	217604610	Silent	SNP	T	TCGA-W5-AA2H-01A-31D-A417-09	6071245	217604610	31646011	11	1232											
MIA3	375056	hgsc.bcm.edu	37	chr1	222825333	222825333	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggcagatatcagaaaacaaGaaatctatagagaagttaaa	21	8	8	4	0	2	4	1	0	1	4	2	5	2	4	0	1	1	2	0	1	10	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	MIA3,NS,carcinoma,0,1	MIA3	NM_198551	exon12	c.G3924T	p.K1308N	AAACAAGAAATCT	.	42	2	27	0	.	0	T	222825333	G	T	222825333	3	4	9	1	0	0	0	0	1	0	0	0	9614	933	33	3	3970	3	MIA3	1	222825333	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	5220723	222825333	26425288	12	1233											
OR2M2	391194	hgsc.bcm.edu;bcgsc.ca	37	chr1	248344069	248344069	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agctttgttcatgtacatacGgcccacatctgatcactccc	9	12	6	14	1	3	1	2	1	1	0	4	1	4	1	2	1	3	3	2	1	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001004688	exon1	c.G782T	p.R261L	ACATACGGCCCAC	.	71	4	45	0	.	.	T	248344069	G	T	248344069	3	4	9	1	0	0	0	0	1	0	0	0	11058	1116	39	2	784	2	OR2M2	1	248344069	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	25518736	248344069	906552	13	1234											
IFT172	26160	hgsc.bcm.edu;ucsc.edu	37	chr2	27670404	27670404	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gctgtttgacactctgggctGcagagcgcgtggcatagtaa	8	10	14	9	2	1	2	0	1	1	1	1	2	1	2	0	2	2	6	0	2	2	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_015662	exon42	c.C4637T	p.A1546V	TGGGCTGCAGAGC	.	23	4	12	0	.	.	A	27670404	G	A	27670404	3	1	9	1	0	0	0	0	1	0	0	0	7601	1319	46	3	640	3	IFT172	2	27670404	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		27670404	215528969	14	1235											
GLI2	2736	hgsc.bcm.edu	37	chr2	121732608	121732608	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgactgtaagcaggaggctGaggtggtcatctatgagacc	11	9	14	7	0	2	3	1	3	1	1	2	5	2	4	1	4	1	3	1	4	2	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GLI2,bladder,carcinoma,0,1	GLI2	NM_005270	exon8	c.G1291T	p.E431X	GAGGCTGAGGTGG	.	18	2	12	0	.	0	T	121732608	G	T	121732608	4	4	9	1	0	0	0	0	0	1	0	0	6480	1291	45	3	1321	3	GLI2	2	121732608	Nonsense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	94062204	121732608	121466765	15	1236											
WDR33	55339	hgsc.bcm.edu	37	chr2	128522061	128522061	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gcataattaaagactgaattCtttatttggaatgaaatatt	16	16	6	3	0	1	3	0	2	1	1	1	4	1	4	0	1	0	1	0	1	8	8	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	WDR33_ENST00000409658,NS,carcinoma,0,2	WDR33_ENST00000409658	NM_001006622	exon6	c.G967A	p.E323K	TGAATTCTTTATT	.	49	2	37	0	.	0	T	128522061	C	T	128522061	3	4	9	1	0	0	0	0	1	0	0	0	17347	922	32	3	3520	3	WDR33	2	128522061	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	6789453	128522061	114677312	16	1237											
ATG16L1	55054	hgsc.bcm.edu	37	chr2	234191392	234191392	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggactgtggatgattatcGattacgggtaagacccagtt	10	12	12	7	2	0	2	0	1	0	1	1	5	0	4	1	3	1	2	1	3	3	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ATG16L1_ENST00000334050,NS,carcinoma,+1,2	ATG16L1_ENST00000334050	NM_030803	exon12	c.G1196T	p.R399L	ATTATCGATTACG	.	31	2	33	0	.	+1	T	234191392	G	T	234191392	3	4	9	1	0	0	0	0	1	0	0	0	1090	1058	37	2	1242	2	ATG16L1	2	234191392	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	105669331	234191392	9007981	17	1238											
KCNH8	131096	hgsc.bcm.edu	37	chr3	19436644	19436644	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcctcttgcgtcttttgCgtctgctgcagaagttagac	5	14	11	11	3	3	2	0	0	3	2	3	2	3	2	1	0	5	3	1	0	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	KCNH8,NS,carcinoma,-1,2	KCNH8	NM_144633	exon7	c.C1018T	p.R340C	CTTTTGCGTCTGC	.	47	2	31	1	.	-1	T	19436644	C	T	19436644	3	4	9	1	0	0	0	0	1	0	0	0	8082	768	27	1	1044	1	KCNH8	3	19436644	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		19436644	178585786	18	1239											
CCDC14	64770	bcgsc.ca	37	chr3	123633883	123633883	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctctggctccttggtggcagCagggatcttaccaattgctt	6	13	11	11	0	2	0	0	0	2	0	3	1	3	1	2	4	3	4	2	4	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	CCDC14	NM_022757	exon12	c.G2482A	p.A828T	TGGCAGCAGGGAT	.	40	4	41	0	.	97	T	123633883	T	T	123633883	3	4	9	1	0	0	0	0	1	0	0	0	2791	710	25	3	260	3	CCDC14	3	123633883	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	104197239	123633883	74388547	19	1240											
GPR125	166647	hgsc.bcm.edu	37	chr4	22390066	22390066	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ttcgtcccattagagttgggGggctggacgttgacttgcac	6	12	14	9	2	0	2	0	1	0	1	2	3	1	3	1	4	1	4	1	4	1	5	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GPR125,right_upper_lobe,carcinoma,0,1	GPR125	NM_145290	exon19	c.C3228A	p.P1076P	GTTGGGGGGCTGG	.	39	2	26	0	.	0	T	22390066	G	T	22390066	2	4	9	1	0	0	0	0	0	0	0	1	6679	1219	43	3		3	GPR125	4	22390066	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		22390066	168764210	20	1241											
TLR1	7096	hgsc.bcm.edu	37	chr4	38798585	38798585	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cttctaagggtatgttcctgGccctgcgccgggtctgggtc	3	12	14	12	2	2	0	0	0	2	0	4	0	3	0	3	4	1	2	3	4	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TLR1,NS,carcinoma,0,1	TLR1	NM_003263	exon4	c.C1868A	p.A623D	TTCCTGGCCCTGC	.	30	2	35	0	.	0	T	38798585	G	T	38798585	3	4	9	1	0	0	0	0	1	0	0	0	16009	1203	42	3	496	3	TLR1	4	38798585	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	16408519	38798585	152355691	21	1242											
PTPN13	5783	hgsc.bcm.edu	37	chr4	87643569	87643569	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgccctagaaacagccatGactcaaagaaaactgagggt	16	7	9	9	0	1	4	1	2	0	2	1	4	1	4	2	1	4	0	2	1	5	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	PTPN13,NS,carcinoma,0,1	PTPN13	NM_006264	exon10	c.G1590T	p.M530I	AGCCATGACTCAA	.	48	2	45	0	.	0	T	87643569	G	T	87643569	3	4	9	1	0	0	0	0	1	0	0	0	12832	1290	45	3	1624	3	PTPN13	4	87643569	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	48844984	87643569	103510707	22	1243											
DDX60	55601	bcgsc.ca	37	chr4	169214990	169214990	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gctctctgtttcctaaaaagCgatggtacattctcaaagat	12	13	7	9	1	2	1	1	0	2	1	5	2	3	1	1	1	2	3	1	1	5	4	rs146995893	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	DDX60	NM_017631	exon7	c.G830T	p.R277L	AAAAAGCGATGGT	.	66	4	50	0	C|1.000;T|0.000	304	A	169214990	A	A	169214990	3	1	9	1	0	0	0	0	1	0	0	0	4401	768	27	2	4436	2	DDX60	4	169214990	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	81571421	169214990	21939286	23	1244											
SDHA	6389	hgsc.bcm.edu	37	chr5	251468	251468	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccaggaatggtctggaacaCggacctggtggagaccctgg	9	6	15	11	1	1	1	0	0	1	1	1	5	1	4	3	7	1	0	3	7	2	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SDHA,NS,malignant_melanoma,0,1	SDHA	NM_004168	exon13	c.C1679G	p.T560R	GGAACACGGACCT	.	62	3	60	0	.	0	G	251468	C	G	251468	3	3	9	1	0	0	0	0	1	0	0	0	14017	536	19	5	1729	5	SDHA	5	251468	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		251468	180663792	24	1245											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	72874933	72874933	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaatgcgcttgcaggtcGggatgagaaggaaatcagtc	12	8	14	7	2	1	1	1	1	0	1	3	4	1	3	0	3	3	3	0	3	3	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_032175	exon11	c.G1238T	p.R413L	CAGGTCGGGATGA	.	62	4	41	0	.	.	T	72874933	G	T	72874933	3	4	9	1	0	0	0	0	1	0	0	0	17157	1116	39	2	1276	2	UTP15	5	72874933	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	72623465	72874933	108040327	25	1246											
APC	324	hgsc.bcm.edu	37	chr5	112176192	112176192	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagcatgttagttttacacCgggggatgatatgccacggg	11	10	13	7	2	0	1	0	1	0	0	0	2	0	2	2	3	3	3	2	3	4	4	rs370433763	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	APC,NS,carcinoma,0,2	APC	NM_001127510	exon17	c.C4901A	p.P1634Q	TTACACCGGGGGA	.	49	2	38	0	.	0	A	112176192	C	A	112176192	3	1	9	1	0	0	0	0	1	0	0	0	759	652	23	2	4959	2	APC	5	112176192	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	39301259	112176192	68739068	26	1247											
GEMIN5	25929	hgsc.bcm.edu	37	chr5	154270801	154270801	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtacttgcctcagtacttacCactggctctgagaactgcag	9	11	9	12	0	2	1	1	1	1	1	2	2	2	1	2	1	6	4	2	1	4	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GEMIN5,NS,carcinoma,0,1	GEMIN5	NM_015465	exon26	c.G4262A	p.C1421Y	ACTTACCACTGGC	.	16	2	14	0	.	0	T	154270801	C	T	154270801	3	4	9	1	0	0	0	0	1	0	0	0	6373	608	21	3	276	3	GEMIN5	5	154270801	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	42094609	154270801	26644459	27	1248											
MRPL22	29093	hgsc.bcm.edu	37	chr5	154336753	154336753	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggaattcaatgacaaaaaagGggccaaaataattaaagagg	21	6	10	4	0	1	2	1	1	0	1	1	3	1	3	1	4	0	0	1	4	10	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_014180	exon5	c.G320T	p.G107V	AAAAAGGGGCCAA	.	99	4	68	0	.	.	T	154336753	G	T	154336753	3	4	9	1	0	0	0	0	1	0	0	0	9837	1232	43	3	338	3	MRPL22	5	154336753	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	65952	154336753	26578507	28	1249											
PHIP	55023	hgsc.bcm.edu	37	chr6	79707219	79707219	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggctatttcacttcttggtgCgttgctgtgcatttgccgta	4	17	11	9	2	2	0	1	0	1	0	2	0	2	0	1	2	4	5	1	2	2	7	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	PHIP,colon,carcinoma,0,2	PHIP	NM_017934	exon19	c.G2113A	p.A705T	TTGGTGCGTTGCT	.	38	3	50	0	.	0	T	79707219	C	T	79707219	3	4	9	1	0	0	0	0	1	0	0	0	11890	768	27	1	3440	1	PHIP	6	79707219	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		79707219	91407848	29	1250											
FAM46A	55603	broad.mit.edu	37	chr6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-																															gcccaccgaagctgccgccaCcgccgaagtcgccgccgccg																								novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FAM46A,colon,carcinoma,+1,1	FAM46A	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	5	1	4	0	.	37	-	82461742	CCGCCGAAGTCGCCG	-	82461728	7	5	9	1	0	1	0	1	0	0	0	0	5601	507	18	0	1205	0	FAM46A	6	82461728	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	TCGA-W5-AA2H-01A-31D-A417-09	2754509	82461728	88653339	30	1251											
VNN2	8875	hgsc.bcm.edu	37	chr6	133070863	133070863	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccaggtgacagatgaatttCggtaagtagcacttcaggaa	13	10	11	7	1	1	3	1	2	0	1	3	4	2	4	1	3	1	3	1	3	4	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	VNN2,face,carcinoma,0,2	VNN2	NM_004665	exon6	c.G1342T	p.E448X	GAATTTCGGTAAG	.	48	2	69	0	.	0	A	133070863	C	A	133070863	4	1	9	1	0	0	0	0	0	1	0	0	17243	893	31	2	228	2	VNN2	6	133070863	Nonsense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	50609135	133070863	38044204	31	1252											
SLC2A12	154091	bcgsc.ca	37	chr6	134350693	134350693	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ccggtgagtgaggcaaggagGgctccaatgacgagggagct	10	5	18	8	2	0	3	0	3	0	0	1	6	1	5	2	5	1	3	2	5	2	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	SLC2A12	NM_145176	exon2	c.C270A	p.A90A	AAGGAGGGCTCCA	.	10	3	20	0	.	43	T	134350693	T	T	134350693	2	4	9	1	0	0	0	0	0	0	0	1	14596	1219	43	3		3	SLC2A12	6	134350693	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	1279830	134350693	36764374	32	1253											
STXBP5	134957	ucsc.edu	37	chr6	147648314	147648314	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggttgactacctccagaaagCagtgctgctcaacctgggca	10	8	11	12	0	1	2	1	1	0	1	2	2	2	2	3	2	5	5	3	2	3	2	rs368337313	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	STXBP5	NM_139244	exon18	c.C1982T	p.A661V	AGAAAGCAGTGCT	.	39	4	21	0	.	163	T	147648314	C	T	147648314	3	4	9	1	0	0	0	0	1	0	0	0	15412	710	25	3	2052	3	STXBP5	6	147648314	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	13297621	147648314	23466753	33	1254											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	157522560	157522560	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggagatcacctttcctcctgGctcagtagaagcatcacaac	11	9	8	13	0	3	2	3	0	0	2	5	3	5	2	3	2	2	3	3	2	3	2	rs3210165	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_020732	exon18	c.G4832A	p.G1611D	CTCCTGGCTCAGT	.	41	4	39	0	.	.	A	157522560	G	A	157522560	3	1	9	1	0	0	0	0	1	0	0	0	911	1203	42	3	4902	3	ARID1B	6	157522560	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	9874246	157522560	13592507	34	1255											
TBP	6908	hgsc.bcm.edu	37	chr6	170871016	170871016	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacaacaacaGcagcagcagcagcagcagca	17	0	10	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	10	0	0	3	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	28	3	27	1	.	0	A	170871016	G	A	170871016	2	1	9	1	0	0	0	0	0	0	0	1	15704	962	34	3		3	TBP	6	170871016	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	13348456	170871016	244051	35	1256											
ICA1	3382	hgsc.bcm.edu	37	chr7	8268281	8268281	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctttcgataagtccagacagGttctctgaattgaatgaaac	13	12	8	8	1	1	4	0	3	1	1	4	5	2	4	1	1	1	1	1	1	4	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ICA1,rectum,carcinoma,0,1	ICA1	NM_022307	exon4	c.C206A	p.T69N	AGACAGGTTCTCT	.	23	2	10	0	.	0	T	8268281	G	T	8268281	3	4	9	1	0	0	0	0	1	0	0	0	7521	1261	44	3	1289	3	ICA1	7	8268281	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		8268281	150870382	36	1257											
UPP1	7378	hgsc.bcm.edu;bcgsc.ca	37	chr7	48139352	48139352	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaatctcaccactagcagaCacaatttcccagccttgttt	11	12	4	14	0	2	1	2	0	1	1	4	1	3	1	3	0	2	2	3	0	3	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_003364	exon4	c.C130A	p.H44N	AGCAGACACAATT	.	60	4	62	0	.	.	A	48139352	C	A	48139352	3	1	9	1	0	0	0	0	1	0	0	0	17072	478	17	3	136	3	UPP1	7	48139352	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	39871071	48139352	110999311	37	1258											
PEX1	5189	hgsc.bcm.edu	37	chr7	92122368	92122368	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagtcagttactgatgCtacatgctgaaggtcaacat	14	10	10	7	0	2	2	2	2	0	0	2	3	2	3	0	2	5	3	0	2	5	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_000466	exon20	c.G3106T	p.A1036S	CTGATGCTACATG	.	57	4	57	0	.	.	A	92122368	C	A	92122368	3	1	9	1	0	0	0	0	1	0	0	0	11783	797	28	3	765	3	PEX1	7	92122368	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	43983016	92122368	67016295	38	1259											
CDCA2	157313	hgsc.bcm.edu	37	chr8	25317954	25317954	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgtgactcctcagaagcatgCcgaattacctcctaatcctt	10	12	6	13	1	1	2	1	1	0	1	4	3	4	2	5	0	3	1	5	0	4	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CDCA2,NS,carcinoma,0,1	CDCA2	NM_152562	exon3	c.C116T	p.A39V	AGCATGCCGAATT	.	33	2	47	0	.	0	T	25317954	C	T	25317954	3	4	9	1	0	0	0	0	1	0	0	0	3108	739	26	3	122	3	CDCA2	8	25317954	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		25317954	121046068	39	1260											
FER1L6	654463	ucsc.edu	37	chr8	125081641	125081641	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gtggtagatatagaagatggGccaaagaagaagaaagacaa	20	5	13	3	0	0	7	0	0	0	7	0	7	0	7	1	2	0	1	1	2	9	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	FER1L6	NM_001039112	exon29	c.G3759T	p.G1253G	AGATGGGCCAAAG	.	34	4	32	0	.	268	T	125081641	G	T	125081641	2	4	9	1	0	0	0	0	0	0	0	1	5848	1190	42	3		3	FER1L6	8	125081641	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	99763687	125081641	21282381	40	1261											
TEK	7010	hgsc.bcm.edu	37	chr9	27202967	27202967	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgaagaccagcacgttgatGtgaagataaagaatgccacc	16	7	10	8	1	0	6	0	3	0	3	0	6	0	6	3	0	2	2	3	0	5	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TEK_ENST00000380036,colon,carcinoma,0,2	TEK_ENST00000380036	NM_000459	exon13	c.G2059T	p.V687L	GTTGATGTGAAGA	.	45	3	24	0	.	0	T	27202967	G	T	27202967	3	4	9	1	0	0	0	0	1	0	0	0	15810	1377	48	3	2109	3	TEK	9	27202967	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		27202967	114010464	41	1262											
ADAMTSL2	9719	hgsc.bcm.edu	37	chr9	136404934	136404934	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcttccgcgaggagcagtgCgtctccttcaactcccacgt	7	9	10	15	4	2	0	1	0	1	0	5	2	4	1	3	1	4	2	3	1	1	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_014694	exon5	c.C351T	p.C117C	GCAGTGCGTCTCC	.	68	4	61	0	.	.	T	136404934	C	T	136404934	2	4	9	1	0	0	0	0	0	0	0	1	274	776	27	1		1	ADAMTSL2	9	136404934	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	109201967	136404934	4808497	42	1263											
CACNB2	783	ucsc.edu	37	chr10	18690927	18690927	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggaccgggaggcagtgcgCagagaagcggagcggcaggc	10	1	21	9	4	0	1	0	0	0	1	0	6	0	4	1	6	3	3	1	6	1	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	CACNB2	NM_201596	exon3	c.C288T	p.R96R	AGTGCGCAGAGAA	.	38	4	22	0	.	220	T	18690927	C	T	18690927	2	4	9	1	0	0	0	0	0	0	0	1	2571	697	25	3		3	CACNB2	10	18690927	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		18690927	116843820	43	1264											
PTCHD3	374308	hgsc.bcm.edu	37	chr10	27702894	27702923	+	In_Frame_Del	DEL	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-																															gggggtttcctcctccggcaGgggtgcatcgtccagctcca																								novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001034842	exon1	c.258_287del	p.86_96del	CCGGCAGGGGTGC	.	16	2	10	0	.	.	-	27702923	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	27702894	7	5	9	1	0	1	0	1	0	0	0	0	12783	991	35	0	2033	0	PTCHD3	10	27702894	In_Frame_Del	DEL	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	TCGA-W5-AA2H-01A-31D-A417-09	9011967	27702894	107831853	44	1265											
GPR123	84435	hgsc.bcm.edu;bcgsc.ca	37	chr10	134916323	134916323	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctggacacagaccagccaccGtaccccaggcagcccctgct	9	4	9	19	1	0	1	0	0	0	1	0	2	0	2	7	2	4	3	7	2	1	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001083909	exon5	c.G378A	p.P126P	GCCACCGTACCCC	.	58	4	52	0	.	.	A	134916323	G	A	134916323	2	1	9	1	0	0	0	0	0	0	0	1	6677	1132	40	1		1	GPR123	10	134916323	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	107213429	134916323	618424	45	1266											
MUC2	4583	bcgsc.ca	37	chr11	1093312	1093312	+	Missense_Mutation	SNP	C	G	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ccactacggtgaccccaaccCcaacacccaccggcacacag	12	2	6	21	2	0	1	0	1	0	0	0	1	0	1	7	2	3	1	7	2	3	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MUC2	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	329	18	300	11	.	614	G	1093312	G	G	1093312	3	3	9	1	0	0	0	0	1	0	0	0	10023	623	22	5	5249	5	MUC2	11	1093312	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		1093312	133913204	46	1267											
SLC22A12	116085	hgsc.bcm.edu	37	chr11	64367324	64367324	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggccgcatccctgttgctggCagggctctgcattctggcca	4	10	13	14	1	2	0	0	0	2	0	3	0	3	0	3	4	2	6	3	4	0	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SLC22A12,caecum,carcinoma,0,1	SLC22A12	NM_144585	exon7	c.C1247T	p.A416V	TGCTGGCAGGGCT	.	12	2	14	0	.	0	T	64367324	C	T	64367324	3	4	9	1	0	0	0	0	1	0	0	0	14498	710	25	3	1273	3	SLC22A12	11	64367324	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	63274012	64367324	70639192	47	1268											
SCYL1	57410	hgsc.bcm.edu	37	chr11	65303776	65303776	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gtccaaattggagtctgtgtCggaggacccgacccagctgg	8	8	14	11	2	1	0	0	0	1	0	3	4	2	3	3	4	1	1	3	4	1	1	rs377549319		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SCYL1_ENST00000270176,caecum,carcinoma,0,1	SCYL1_ENST00000270176	NM_020680	exon12	c.C1622T	p.S541L	CTGTGTCGGAGGA	.	17	2	17	0	.	0	T	65303776	C	T	65303776	3	4	9	1	0	0	0	0	1	0	0	0	14001	893	31	1	1668	1	SCYL1	11	65303776	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	936452	65303776	69702740	48	1269											
NLRX1	79671	hgsc.bcm.edu	37	chr11	119043116	119043116	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggccccttcaaggggagcGtccctttgggccccctaggt	4	10	13	14	1	1	0	1	0	0	0	2	1	2	1	5	5	1	0	5	5	2	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	NLRX1,mouth,carcinoma,0,1	NLRX1	NM_024618	exon3	c.G122A	p.R41H	GGGAGCGTCCCTT	.	61	3	49	0	.	0	A	119043116	G	A	119043116	3	1	9	1	0	0	0	0	1	0	0	0	10532	1145	40	1	128	1	NLRX1	11	119043116	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	53739340	119043116	15963400	49	1270											
DDX11	1663	broad.mit.edu	37	chr12	31242073	31242073	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgttcggctggtctccctTggctcccggcaggtaaacag	6	10	13	12	2	1	0	0	0	1	0	4	1	2	0	2	5	1	5	2	5	2	3	rs3874111		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	DDX11	NM_030653	exon7	c.T780C	p.L260L	CTCCCTTGGCTCC	.	75	8	70	1	.	188	C	31242073	T	C	31242073	2	2	9	1	0	0	0	0	0	0	0	1	4366	1799	63	4		4	DDX11	12	31242073	Silent	SNP	T	TCGA-W5-AA2H-01A-31D-A417-09		31242073	102609822	50	1271											
GRASP	160622	hgsc.bcm.edu	37	chr12	52407671	52407671	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaacctcagactggaaactCtatatgggacatcaattcgg	13	9	8	11	1	3	1	2	0	1	1	4	3	3	3	2	3	2	0	2	3	5	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GRASP,lower_third,carcinoma,0,1	GRASP	NM_181711	exon6	c.C559A	p.L187I	GAAACTCTATATG	.	27	2	20	0	.	0	A	52407671	C	A	52407671	3	1	9	1	0	0	0	0	1	0	0	0	6796	912	32	3	581	3	GRASP	12	52407671	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	21165598	52407671	81444224	51	1272											
SLC7A7	9056	hgsc.bcm.edu	37	chr14	23242838	23242838	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tttagttagatttgggatccCgttgcttgggcatctctcct	5	17	10	9	1	1	1	0	0	1	1	4	2	3	2	2	2	1	4	2	2	2	6	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SLC7A7,NS,haematopoietic_neoplasm,0,1	SLC7A7	NM_001126105	exon11	c.G1517A	p.R506Q	GGATCCCGTTGCT	.	23	2	19	0	.	0	T	23242838	C	T	23242838	3	4	9	1	0	0	0	0	1	0	0	0	14758	652	23	1	22	1	SLC7A7	14	23242838	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		23242838	84106702	52	1273											
DICER1	23405	hgsc.bcm.edu;bcgsc.ca	37	chr14	95562824	95562824	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgggcattttccattcatatGcagaatcagtggttgaaaaa	13	13	9	6	0	2	2	2	1	0	1	3	2	3	2	1	2	1	3	1	2	4	5	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_030621	exon24	c.C4433T	p.A1478V	TCATATGCAGAAT	.	64	4	76	0	.	.	A	95562824	G	A	95562824	3	1	9	1	0	0	0	0	1	0	0	0	4549	1319	46	3	1355	3	DICER1	14	95562824	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	72319986	95562824	11786716	53	1274											
JAG2	3714	hgsc.bcm.edu	37	chr14	105609199	105609199	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggagtcctcctcaccgcggcCcagatcctcgtcctcctcat	5	9	8	19	3	2	1	2	0	0	1	8	2	7	2	7	2	0	0	7	2	0	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_002226	exon26	c.G3550A	p.G1184S	CGCGGCCCAGATC	.	29	4	34	0	.	.	T	105609199	C	T	105609199	3	4	9	1	0	0	0	0	1	0	0	0	7979	623	22	3	170	3	JAG2	14	105609199	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	10046375	105609199	1740341	54	1275											
AQR	9716	hgsc.bcm.edu;bcgsc.ca	37	chr15	35155082	35155082	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tcctacctttctagtagttgGgaaaggttctgttggaatta	9	16	10	6	0	2	0	0	0	2	0	3	2	3	2	2	3	1	4	2	3	6	8	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	AQR,NS,carcinoma,0,1	AQR	NM_014691	exon33	c.C4015A	p.P1339T	TAGTTGGGAAAGG	.	59	4	43	0	.	0	T	35155082	G	T	35155082	3	4	9	1	0	0	0	0	1	0	0	0	832	1232	43	3	454	3	AQR	15	35155082	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		35155082	67376310	55	1276											
TMEM87A	25963	broad.mit.edu	37	chr15	42556290	42556290	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcactttcaaagattacctGtgttttaaagagttcactgc	12	15	6	8	0	3	2	3	0	0	2	3	2	3	2	1	0	2	2	1	0	4	5	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	TMEM87A	NM_001110503	exon4	c.C403A	p.Q135K	TTACCTGTGTTTT	.	46	3	40	0	.	56	T	42556290	G	T	42556290	3	4	9	1	0	0	0	0	1	0	0	0	16270	1386	48	3	1378	3	TMEM87A	15	42556290	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	7401208	42556290	59975102	56	1277											
SEMA6D	80031	hgsc.bcm.edu;bcgsc.ca	37	chr15	48052508	48052508	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttttacttgcagattcaagGcaatatccggtttttagagg	10	16	9	6	1	1	2	1	0	0	2	2	2	2	2	1	3	2	3	1	3	5	9	rs140647776		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_153617	exon3	c.G117A	p.R39R	TTCAAGGCAATAT	.	46	4	36	0	0.000	.	A	48052508	G	A	48052508	2	1	9	1	0	0	0	0	0	0	0	1	14096	1194	42	3		3	SEMA6D	15	48052508	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	5496218	48052508	54478884	57	1278											
SECISBP2L	9728	bcgsc.ca	37	chr15	49304061	49304061	+	Splice_Site	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctctttcttttaaaataacCtaaaagtcattacactagtc	14	16	2	9	0	3	0	1	0	2	0	5	0	3	0	1	0	2	0	1	0	7	7	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	SECISBP2L	NM_001193489	exon14	c.1732-1G>T	.	AATAACCTAAAAG	.	69	4	53	0	.	118	A	49304061	A	A	49304061	5	1	9	1	0	0	0	0	0	0	1	0	14061	695	24	3	1598	3	SECISBP2L	15	49304061	Splice_Site	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	1251553	49304061	53227331	58	1279											
USP8	9101	hgsc.bcm.edu;ucsc.edu	37	chr15	50785054	50785054	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atattgcagtgcctatgtaaCgctccacatttggctgatta	10	14	8	9	1	0	1	0	1	0	0	1	1	1	1	2	1	3	4	2	1	4	6	rs199814360		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	40	6	23	0	.	.	T	50785054	C	T	50785054	2	4	9	1	0	0	0	0	0	0	0	1	17149	535	19	1		1	USP8	15	50785054	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	1480993	50785054	51746338	59	1280											
PIF1	80119	bcgsc.ca	37	chr15	65114771	65114771	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcttggtggagggcaaGctcagcctcttcacaggcag	7	9	15	10	0	3	0	2	0	1	0	3	1	3	1	1	5	2	4	1	5	1	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	PIF1	NM_025049	exon3	c.C597A	p.S199R	GGGCAAGCTCAGC	.	56	4	50	0	.	43	T	65114771	T	T	65114771	3	4	9	1	0	0	0	0	1	0	0	0	11931	962	34	3	1372	3	PIF1	15	65114771	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	14329717	65114771	37416621	60	1281											
ABCA3	21	hgsc.bcm.edu	37	chr16	2347794	2347794	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cctgcgatgagggcgatgccGatggagagcttgcgcctcat	7	8	15	11	4	1	2	1	1	0	1	1	6	1	2	3	2	4	1	3	2	0	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ABCA3,colon,carcinoma,0,1	ABCA3	NM_001089	exon16	c.C2025T	p.I675I	GATGCCGATGGAG	.	61	3	21	0	.	0	A	2347794	G	A	2347794	2	1	9	1	0	0	0	0	0	0	0	1	33	1048	37	1		1	ABCA3	16	2347794	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		2347794	88006959	61	1282											
ZNF263	10127	hgsc.bcm.edu	37	chr16	3339426	3339426	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagaacctggaaggtgttcCgtctgtatgctctgagaaca	10	11	12	8	1	2	2	0	2	2	2	3	5	3	3	2	2	3	3	2	2	4	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ZNF263,NS,carcinoma,0,1	ZNF263	NM_005741	exon6	c.C920A	p.P307Q	GTGTTCCGTCTGT	.	36	2	35	0	.	0	A	3339426	C	A	3339426	3	1	9	1	0	0	0	0	1	0	0	0	17861	652	23	2	942	2	ZNF263	16	3339426	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	991632	3339426	87015327	62	1283											
RBBP6	5930	hgsc.bcm.edu	37	chr16	24582226	24582226	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aactggaggcagtcctgtgcGgaaatctgaagaaaaaacag	16	6	12	7	1	1	2	0	1	1	1	2	4	2	4	1	3	3	1	1	3	6	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_006910	exon18	c.G3839T	p.R1280L	CTGTGCGGAAATC	.	92	4	77	0	.	.	T	24582226	G	T	24582226	3	4	9	1	0	0	0	0	1	0	0	0	13155	1116	39	2	3963	2	RBBP6	16	24582226	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	21242800	24582226	65772527	63	1284											
NDEL1	81565	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	8350192	8350192	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgtgagagagctggagcagGccaacgacgacctggagcga	12	4	16	9	3	0	2	0	1	0	1	0	8	0	4	2	3	4	2	2	3	1	0	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001025579	exon4	c.G361A	p.A121T	GAGCAGGCCAACG	.	55	5	65	0	.	.	A	8350192	G	A	8350192	3	1	9	1	0	0	0	0	1	0	0	0	10291	1203	42	3	371	3	NDEL1	17	8350192	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		8350192	72845018	64	1285											
ZNF624	57547	ucsc.edu;bcgsc.ca	37	chr17	16527621	16527621	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgactagtgggagtcttcttGagtggaattattctttgact	8	17	11	5	0	3	3	0	3	3	0	3	5	3	5	0	2	0	0	0	2	3	6	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	ZNF624	NM_020787	exon6	c.C579A	p.L193L	CTTCTTGAGTGGA	.	42	4	47	0	.	91	T	16527621	G	T	16527621	2	4	9	1	0	0	0	0	0	0	0	1	18105	1277	45	3		3	ZNF624	17	16527621	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	8177429	16527621	64667589	65	1286											
HEATR6	63897	hgsc.bcm.edu	37	chr17	58156223	58156223	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggattgcttcccgcggtGcctcccgcggctgcacggaa	5	7	14	15	5	0	0	0	0	0	0	2	2	2	2	3	4	3	3	3	4	1	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_022070	exon1	c.C53T	p.A18V	CGCGGTGCCTCCC	.	46	4	30	0	.	.	A	58156223	G	A	58156223	3	1	9	1	0	0	0	0	1	0	0	0	7074	1319	46	3	3572	3	HEATR6	17	58156223	Missense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	41628602	58156223	23038987	66	1287											
LPIN2	9663	ucsc.edu	37	chr18	2923829	2923829	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgggtccagtctttgcccagCtgtgggagaatctgtcccaa	7	11	12	11	0	2	1	0	0	2	1	4	2	4	1	3	2	2	1	3	2	2	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	LPIN2	NM_014646	exon16	c.G2118A	p.Q706Q	GCCCAGCTGTGGG	.	31	4	24	0	.	75	T	2923829	C	T	2923829	2	4	9	1	0	0	0	0	0	0	0	1	8964	796	28	3		3	LPIN2	18	2923829	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		2923829	75153419	67	1288											
TBXA2R	6915	hgsc.bcm.edu	37	chr19	3600542	3600542	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccacgcagaaggaggcggCgaaccagggcgaggcgatca	12	1	16	12	5	1	1	1	0	0	1	1	5	1	2	2	5	1	1	2	5	2	0	rs201738444		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TBXA2R,NS,carcinoma,0,1	TBXA2R	NM_201636	exon2	c.G91A	p.A31T	AGGCGGCGAACCA	.	59	3	47	1	.	0	T	3600542	C	T	3600542	3	4	9	1	0	0	0	0	1	0	0	0	15723	768	27	1	1193	1	TBXA2R	19	3600542	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		3600542	55528441	68	1289											
ZNF791	163049	hgsc.bcm.edu	37	chr19	12739912	12739912	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgcatactggagagaaaccCtataaatgtaaagaatgtgg	17	9	10	5	0	0	2	0	0	0	2	0	4	0	3	1	2	3	2	1	2	8	4	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ZNF791,NS,carcinoma,0,2	ZNF791	NM_153358	exon4	c.C1569A	p.P523P	GAAACCCTATAAA	.	38	2	27	0	.	0	A	12739912	C	A	12739912	2	1	9	1	0	0	0	0	0	0	0	1	18212	668	24	3		3	ZNF791	19	12739912	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	9139370	12739912	46389071	69	1290											
CCDC61	729440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	46511419	46511419	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	attcactacccgctgcccctCccgtaccagggcaagccaga	9	6	8	18	2	1	1	1	0	0	1	2	1	2	1	6	1	4	3	6	1	3	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001267723	exon5	c.C411T	p.L137L	GCCCCTCCCGTAC	.	64	5	52	0	.	.	T	46511419	C	T	46511419	2	4	9	1	0	0	0	0	0	0	0	1	2852	842	30	3		3	CCDC61	19	46511419	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	33771507	46511419	12617564	70	1291											
DPRX	503834	hgsc.bcm.edu	37	chr19	54140174	54140174	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctaccccattttggaatccCaagtttgcgctccaagcttc	8	13	6	14	1	1	0	0	0	1	0	4	1	3	1	4	1	3	3	4	1	4	5	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	DPRX,NS,carcinoma,0,1	DPRX	NM_001012728	exon3	c.C508A	p.Q170K	GAATCCCAAGTTT	.	32	2	33	0	.	0	A	54140174	C	A	54140174	3	1	9	1	0	0	0	0	1	0	0	0	4764	595	21	3	518	3	DPRX	19	54140174	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09	7628755	54140174	4988809	71	1292											
MATN4	8785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	43932932	43932932	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgaaggactctacgaggaaGacgtgctcgtctagcggggg	9	7	16	9	5	2	1	0	0	2	1	4	5	2	3	0	4	3	1	0	4	4	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_030592	exon3	c.C579A	p.V193V	GAGGAAGACGTGC	.	23	4	19	0	.	.	T	43932932	G	T	43932932	2	4	9	1	0	0	0	0	0	0	0	1	9386	929	33	3		3	MATN4	20	43932932	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		43932932	19092588	72	1293											
RPS21	6227	hgsc.bcm.edu	37	chr20	60962906	60962906	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttctctttctaggttgacaAggtcacaggcaggtttaatg	9	14	10	8	0	3	1	1	1	2	0	4	1	3	1	0	4	0	3	0	4	3	6	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	RPS21,NS,carcinoma,0,1	RPS21	NM_001024	exon4	c.A122G	p.K41R	TTGACAAGGTCAC	.	14	2	26	0	.	0	G	60962906	A	G	60962906	3	3	9	1	0	0	0	0	1	0	0	0	13685	72	3	4	132	4	RPS21	20	60962906	Missense_Mutation	SNP	A	TCGA-W5-AA2H-01A-31D-A417-09	17029974	60962906	2062614	73	1294											
TPTE	7179	broad.mit.edu	37	chr21	10916473	10916473	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatatgcaacatatctCttctgaaaagcaacagaaat	19	9	5	8	0	2	2	0	1	2	1	3	2	2	2	0	0	4	3	0	0	9	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	TPTE	NM_199261	exon20	c.G1173T	p.K391N	ATATCTCTTCTGA	.	223	6	174	0	.	513	A	10916473	C	A	10916473	3	1	9	1	0	0	0	0	1	0	0	0	16491	912	32	3	502	3	TPTE	21	10916473	Missense_Mutation	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		10916473	37213422	74	1295											
SON	6651	hgsc.bcm.edu	37	chr21	34948697	34948697	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaatggagcccttaccagAcccaattgtatgtttttctt	11	14	7	9	0	1	2	0	0	1	2	1	3	1	3	3	1	2	2	3	1	4	6	rs199930883	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.,4	.	NM_138927	exon12	c.A7248G	p.R2416R	TACCAGACCCAAT	.	74	4	40	1	.	343	G	34948697	A	G	34948697	2	3	9	1	0	0	0	0	0	0	0	1	14980	272	10	4		4	SON	21	34948697	Silent	SNP	A	TCGA-W5-AA2H-01A-31D-A417-09	24032224	34948697	13181198	75	1296											
BAIAP2L2	80115	hgsc.bcm.edu;bcgsc.ca	37	chr22	38504287	38504287	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atctgtgaggtggggctctgCagggcacgctccccaatctt	6	10	13	12	1	3	1	0	1	3	0	4	1	4	1	2	4	1	4	2	4	1	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_025045	exon3	c.G189A	p.L63L	GCTCTGCAGGGCA	.	45	4	35	0	.	.	T	38504287	C	T	38504287	2	4	9	1	0	0	0	0	0	0	0	1	1301	697	25	3		3	BAIAP2L2	22	38504287	Silent	SNP	C	TCGA-W5-AA2H-01A-31D-A417-09		38504287	12800279	76	1297											
MAPK12	6300	ucsc.edu	37	chr22	50694524	50694524	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agcttctcacccgtctgcgtGtagcgcatccaattcaagat	9	11	8	13	3	3	1	2	0	2	1	5	1	4	1	2	0	3	3	2	0	3	3	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MAPK12	NM_002969	exon7	c.C609A	p.Y203X	CTGCGTGTAGCGC	.	21	4	18	0	.	43	T	50694524	G	T	50694524	4	4	9	1	0	0	0	0	0	1	0	0	9324	1372	48	3	518	3	MAPK12	22	50694524	Nonsense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	12190237	50694524	610042	77	1298											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	11	6	19	5	3	1	2	1	0	0	2	2	6	2	4	1	5	1	2	1	5	4	2	rs2801626		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	96	8	71	1	.	28	A	51076024	G	A	51076024	2	1	9	1	0	0	0	0	0	0	0	1	10774	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09		51076024	104194536	78	1299											
MED12	9968	broad.mit.edu	37	chrX	70349589	70349589	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggaacagaagaacttccaGaggaggagggaggaggtggc	14	3	19	5	0	0	3	0	0	0	3	1	9	1	8	1	7	2	0	1	7	3	1	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MED12	NM_005120	exon27	c.G3751T	p.E1251X	CTTCCAGAGGAGG	.	35	3	28	0	.	984	T	70349589	G	T	70349589	4	4	9	1	0	0	0	0	0	1	0	0	9478	943	33	3	3857	3	MED12	23	70349589	Nonsense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	19273565	70349589	84920971	79	1300											
ABCB7	22	hgsc.bcm.edu	37	chrX	74375943	74375943	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgtcagtggcatctcacctgGtaggctcgagcggttcccaa	7	10	12	12	2	2	0	2	0	1	0	5	1	3	0	2	4	1	4	2	4	2	2	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001271697	exon1	c.C165A	p.Y55X	CACCTGGTAGGCT	.	97	3	100	0	.	.	T	74375943	G	T	74375943	4	4	9	1	0	0	0	0	0	1	0	0	46	1256	44	3	2160	3	ABCB7	23	74375943	Nonsense_Mutation	SNP	G	TCGA-W5-AA2H-01A-31D-A417-09	4026354	74375943	80894617	80	1301											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	16451813	16451813	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaccccaatcctcttgatgTcgctgtgggccgggagggag	6	8	15	12	2	1	1	0	1	1	0	3	3	2	3	4	3	0	2	4	3	1	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004431	exon17	c.A2828T	p.D943V	TTGATGTCGCTGT	.	30	18	37	0	.	.	A	16451813	T	A	16451813	3	1	10	1	0	0	0	0	1	0	0	0	5195	1667	58	5	106	5	EPHA2	1	16451813	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09		16451813	232798808	1	1302											
ZNF691	51058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	43317239	43317239	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgtgagtgtgggaagAgcttcagcaacagctccagc	9	9	13	10	0	2	2	1	1	1	1	3	3	3	3	1	1	6	4	1	1	2	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001242739	exon4	c.A703T	p.S235C	GGGAAGAGCTTCA	.	14	4	12	0	.	.	T	43317239	A	T	43317239	3	4	10	1	0	0	0	0	1	0	0	0	18152	304	11	5	612	5	ZNF691	1	43317239	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	26865426	43317239	205933382	2	1303											
ROR1	4919	broad.mit.edu	37	chr1	64603123	64603123	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagatttattggcaaccGcaccgtctatatggagtctt	10	13	9	9	2	2	1	0	0	2	1	2	2	2	2	2	2	2	3	2	2	5	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	ROR1	NM_001083592	exon5	c.G554A	p.R185H	GCAACCGCACCGT	.	51	3	61	0	.	113	A	64603123	G	A	64603123	3	1	10	1	0	0	0	0	1	0	0	0	13578	1087	38	1	572	1	ROR1	1	64603123	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	21285884	64603123	184647498	3	1304											
CNN3	1266	bcgsc.ca	37	chr1	95364930	95364930	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aaaaaggtattgcttacctgGctggctcctttattagtgcc	9	14	9	9	0	0	0	0	0	0	0	1	0	1	0	3	3	3	4	3	3	6	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CNN3	NM_001839	exon6	c.C645T	p.S215S	TACCTGGCTGGCT	.	64	4	56	0	.	23	A	95364930	A	A	95364930	2	1	10	1	0	0	0	0	0	0	0	1	3634	1194	42	3		3	CNN3	1	95364930	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	30761807	95364930	153885691	4	1305											
ADCY10	55811	hgsc.bcm.edu	37	chr1	167780114	167780114	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gagccttgggcaaaagacagGgccagtggtattttgagcca	11	8	14	8	0	0	2	0	1	0	1	0	3	0	2	3	3	2	2	3	3	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ADCY10,NS,carcinoma,0,1	ADCY10	NM_018417	exon32	c.C4519A	p.P1507T	AGACAGGGCCAGT	.	52	3	68	0	.	0	T	167780114	G	T	167780114	3	4	10	1	0	0	0	0	1	0	0	0	292	1232	43	3	321	3	ADCY10	1	167780114	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	72415184	167780114	81470507	5	1306											
RASAL2	9462	bcgsc.ca	37	chr1	178408564	178408564	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttctacttttaggtctcgtGggctgcctaaactaaaagag	10	14	9	8	1	2	1	0	0	2	1	3	1	2	1	1	2	3	1	1	2	6	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	RASAL2	NM_170692	exon6	c.G682A	p.G228R	TCTCGTGGGCTGC	.	27	3	60	0	.	334	A	178408564	A	A	178408564	3	1	10	1	0	0	0	0	1	0	0	0	13116	1348	47	3	721	3	RASAL2	1	178408564	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	10628450	178408564	70842057	6	1307											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	179983051	179983051	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tagacatcttcaaagaaactCagaacgttcgagaagtaaat	18	9	7	7	2	3	4	2	0	1	4	4	5	3	4	0	0	2	2	0	0	7	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_014810	exon10	c.C1463T	p.S488L	GAAACTCAGAACG	.	87	29	98	0	.	.	T	179983051	C	T	179983051	3	4	10	1	0	0	0	0	1	0	0	0	3276	838	29	3	1497	3	CEP350	1	179983051	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	1574487	179983051	69267570	7	1308											
KIAA1614	57710	hgsc.bcm.edu	37	chr1	180886014	180886014	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagatctggatagcacatccCtgacctccgaggaggtcttt	9	10	10	12	1	2	2	0	1	2	1	4	5	4	4	3	3	1	1	3	3	1	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	KIAA1614,NS,carcinoma,0,1	KIAA1614	NM_020950	exon2	c.C775A	p.L259M	ACATCCCTGACCT	.	40	2	27	0	.	0	A	180886014	C	A	180886014	3	1	10	1	0	0	0	0	1	0	0	0	8290	680	24	3	781	3	KIAA1614	1	180886014	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	902963	180886014	68364607	8	1309											
RGS8	85397	hgsc.bcm.edu;bcgsc.ca	37	chr1	182640815	182640815	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttggccagtcctcatggcCtgagggtctttgccaactgg	5	12	12	12	0	2	1	1	1	1	0	3	1	3	1	4	4	2	0	4	4	1	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_033345	exon2	c.G57T	p.Q19H	CATGGCCTGAGGG	.	59	4	77	0	.	.	A	182640815	C	A	182640815	3	1	10	1	0	0	0	0	1	0	0	0	13362	680	24	3	589	3	RGS8	1	182640815	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	1754801	182640815	66609806	9	1310											
PRG4	10216	hgsc.bcm.edu	37	chr1	186276306	186276306	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccaaagagcctgcacccacTgcccccaagaagcctgcccc	10	3	7	21	0	0	2	0	0	0	2	0	2	0	2	8	0	5	1	8	0	3	0	rs78867190	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PRG4,NS,carcinoma,0,1	PRG4	NM_005807	exon7	c.T1455C	p.T485T	ACCCACTGCCCCC	.	86	4	77	1	.	0	C	186276306	T	C	186276306	2	2	10	1	0	0	0	0	0	0	0	1	12533	1567	55	4		4	PRG4	1	186276306	Silent	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	3635491	186276306	62974315	10	1311											
CHI3L1	1116	broad.mit.edu;bcgsc.ca	37	chr1	203148988	203148988	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attctatggactgtggctccGcggaggaagtcacagatctg	9	10	13	9	2	3	1	1	0	2	1	4	4	4	4	1	4	0	1	1	4	2	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CHI3L1,colon,carcinoma,-2,1	CHI3L1	NM_001276	exon9	c.C912T	p.R304R	GGCTCCGCGGAGG	.	19	8	24	0	.	51	A	203148988	G	A	203148988	2	1	10	1	0	0	0	0	0	0	0	1	3362	1074	38	1		1	CHI3L1	1	203148988	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	16872682	203148988	46101633	11	1312											
PIGR	5284	hgsc.bcm.edu	37	chr1	207107996	207107996	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgcaccagtatttctCgtacgaggagaatttgcatg	10	12	9	10	2	1	1	0	0	1	1	2	3	1	1	2	1	3	4	2	1	3	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PIGR,NS,carcinoma,0,2	PIGR	NM_002644	exon6	c.G1474T	p.E492X	ATTTCTCGTACGA	.	35	2	16	0	.	0	A	207107996	C	A	207107996	4	1	10	1	0	0	0	0	0	1	0	0	11945	893	31	2	844	2	PIGR	1	207107996	Nonsense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	3959008	207107996	42142625	12	1313											
RPS6KC1	26750	hgsc.bcm.edu	37	chr1	213415426	213415426	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagagagactctgagactaaGggtgaaagtggtttagtgct	12	10	14	5	0	1	4	0	2	1	3	1	6	1	4	0	2	1	2	0	2	3	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RPS6KC1,NS,carcinoma,0,1	RPS6KC1	NM_012424	exon11	c.G2607T	p.K869N	GACTAAGGGTGAA	.	48	2	41	0	.	0	T	213415426	G	T	213415426	3	4	10	1	0	0	0	0	1	0	0	0	13710	991	35	3	2649	3	RPS6KC1	1	213415426	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	6307430	213415426	35835195	13	1314											
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	220151958	220151958	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aatcagctctaacgcggatgTtaacactgagtaatcgcctt	12	11	8	10	3	2	1	1	1	1	0	3	2	2	2	1	1	3	3	1	1	4	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004446	exon28	c.A4013T	p.N1338I	CGGATGTTAACAC	.	43	15	58	0	.	.	A	220151958	T	A	220151958	3	1	10	1	0	0	0	0	1	0	0	0	5219	1725	60	5	545	5	EPRS	1	220151958	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	6736532	220151958	29098663	14	1315											
C2orf16	84226	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	27799950	27799950	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacaaggattggcatataaaGgcatagatactgtagagaaa	18	8	10	5	0	0	2	0	0	0	2	0	4	0	3	0	3	1	3	0	3	8	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_032266	exon1	c.G511T	p.G171C	TATAAAGGCATAG	.	42	4	59	0	.	.	T	27799950	G	T	27799950	3	4	10	1	0	0	0	0	1	0	0	0	2171	1000	35	3	513	3	C2orf16	2	27799950	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		27799950	215399423	15	1316											
SNRNP200	23020	broad.mit.edu	37	chr2	96961292	96961292	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgggtgatgatgtcccaCttctcgggggtgcagacgat	6	11	15	9	3	1	3	0	2	1	1	3	4	2	3	1	3	2	1	1	3	0	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	SNRNP200	NM_014014	exon14	c.G1776A	p.K592K	GTCCCACTTCTCG	.	4	2	15	0	.	195	T	96961292	C	T	96961292	2	4	10	1	0	0	0	0	0	0	0	1	14906	564	20	3		3	SNRNP200	2	96961292	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	69161342	96961292	146238081	16	1317											
DPP4	1803	hgsc.bcm.edu	37	chr2	162875264	162875264	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catctcagctgataatacttCgcctctttactgaatgacac	11	13	5	12	1	2	3	1	3	2	0	4	3	2	3	1	0	3	1	1	0	4	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DPP4,NS,carcinoma,-1,2	DPP4	NM_001935	exon16	c.G1395T	p.A465A	ATACTTCGCCTCT	.	30	2	34	0	.	-1	A	162875264	C	A	162875264	2	1	10	1	0	0	0	0	0	0	0	1	4755	871	31	2		2	DPP4	2	162875264	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	65913972	162875264	80324109	17	1318											
CCDC141	285025	hgsc.bcm.edu	37	chr2	179733971	179733971	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gagacttttcttttacagggGctcctctgccagttaactcc	7	14	8	12	0	2	1	0	0	2	1	4	2	4	1	3	2	3	2	3	2	2	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CCDC141_ENST00000420890,NS,carcinoma,0,2	CCDC141_ENST00000420890	NM_173648	exon15	c.C2267A	p.A756D	ACAGGGGCTCCTC	.	42	2	55	0	.	0	T	179733971	G	T	179733971	3	4	10	1	0	0	0	0	1	0	0	0	2793	1203	42	3	2121	3	CCDC141	2	179733971	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	16858707	179733971	63465402	18	1319											
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182542721	182542721	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttttctcaaactcggcggaCggttcgtgtttgaaagagaa	10	13	11	7	4	1	2	1	1	1	1	4	4	1	3	0	3	1	2	0	3	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002500	exon2	c.G867A	p.P289P	GGCGGACGGTTCG	.	22	5	29	0	.	.	T	182542721	C	T	182542721	2	4	10	1	0	0	0	0	0	0	0	1	10395	523	19	1		1	NEUROD1	2	182542721	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	2808750	182542721	60656652	19	1320											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217315693	217315693	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgcctgccaagcagcGcaagatagtggtgattgccc	9	7	12	13	1	0	2	0	1	0	1	0	2	0	2	4	1	6	3	4	1	3	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_014140	exon12	c.G1976A	p.R659H	AGCAGCGCAAGAT	.	28	11	18	0	.	.	A	217315693	G	A	217315693	3	1	10	1	0	0	0	0	1	0	0	0	14827	1087	38	1	2014	1	SMARCAL1	2	217315693	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	34772972	217315693	25883680	20	1321											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	230672523	230672523	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gtgttctgtgcatttcccttCttcaacatggtatcaactgc	7	16	7	11	0	4	0	2	0	2	0	5	0	5	0	1	1	4	3	1	1	3	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004238	exon16	c.G2253C	p.K751N	TCCCTTCTTCAAC	.	42	12	29	0	.	.	G	230672523	C	G	230672523	3	3	10	1	0	0	0	0	1	0	0	0	16617	912	32	5	3829	5	TRIP12	2	230672523	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	13356830	230672523	12526850	21	1322											
SP140	11262	hgsc.bcm.edu	37	chr2	231159016	231159016	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgatcctccaagaataCgttacaggaaaaaaaaggtg	16	8	9	8	1	0	2	0	1	0	1	2	3	2	3	3	2	3	1	3	2	8	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	SP140_ENST00000392045,NS,carcinoma,0,1	SP140_ENST00000392045	NM_007237	exon21	c.C1999T	p.R667C	AGAATACGTTACA	.	68	3	102	0	.	0	T	231159016	C	T	231159016	3	4	10	1	0	0	0	0	1	0	0	0	15016	536	19	1	2198	1	SP140	2	231159016	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	486493	231159016	12040357	22	1323											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	chr2	238289918	238289918	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtccaggggcttcattttccGcacagcggttatgacttccc	6	12	10	13	2	1	1	1	1	0	0	4	1	4	1	3	3	1	3	3	3	1	5	rs369379463	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	COL6A3	NM_004369	exon5	c.C1537T	p.R513W	TTTTCCGCACAGC	.	27	4	20	0	.	608	A	238289918	G	A	238289918	3	1	10	1	0	0	0	0	1	0	0	0	3724	1086	38	1	8203	1	COL6A3	2	238289918	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	7130902	238289918	4909455	23	1324											
SNED1	25992	hgsc.bcm.edu	37	chr2	241976736	241976736	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aacagtttccgctgccagtgCccggctggctttgggggacc	5	9	14	13	2	0	0	0	0	0	0	1	1	1	1	4	4	3	4	4	4	1	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001080437	exon6	c.C1011T	p.C337C	CCAGTGCCCGGCT	.	82	4	68	0	.	.	T	241976736	C	T	241976736	2	4	10	1	0	0	0	0	0	0	0	1	14899	747	26	3		3	SNED1	2	241976736	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	3686818	241976736	1222637	24	1325											
RBM15B	29890	broad.mit.edu;bcgsc.ca	37	chr3	51430852	51430853	+	Frame_Shift_Del	DEL	CT	CT	-																															caccaccacgaggctgcagaCtcttcccacgggaagaaggc																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	RBM15B	NM_013286	exon1	c.2022_2023del	p.674_675del	TGCAGACTCTTCC	.	12	5	22	0	.	47	-	51430853	CT	-	51430852	7	5	10	1	0	1	0	1	0	0	0	0	13169	564	20	0	2024	0	RBM15B	3	51430852	Frame_Shift_Del	DEL	CT	TCGA-W5-AA2I-01A-32D-A417-09		51430852	146591578	25	1326											
PBRM1	55193	hgsc.bcm.edu	37	chr3	52621438	52621439	+	In_Frame_Ins	INS	-	-	AAT																															tgttgtaatagtcactcttaINSaaaacttctttttctagaaa																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,1	.	NM_018313	exon20	c.2979_2980insATT	p.F993delinsLF	ACTCTTAAAAACT	.	45	27	76	0	.	1252	AAT	52621439	-	AAT	52621438	7	5	10	1	0	1	1	0	0	0	0	0	11538	359	13	0	1894	0	PBRM1	3	52621438	In_Frame_Ins	INS	-	TCGA-W5-AA2I-01A-32D-A417-09	1190586	52621438	145400992	26	1327											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	86010630	86010630	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atccaataggccagaacctgTtttgtggacaaaggatggcg	12	9	12	8	1	0	1	0	0	0	1	1	3	1	3	3	4	1	1	3	4	4	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001167675	exon8	c.T803C	p.V268A	AACCTGTTTTGTG	.	41	27	94	0	.	.	C	86010630	T	C	86010630	3	2	10	1	0	0	0	0	1	0	0	0	2585	1725	60	4	873	4	CADM2	3	86010630	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	33389192	86010630	112011800	27	1328											
OR5H6	79295	hgsc.bcm.edu	37	chr3	97983496	97983496	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttttttcccttgtaaccaCtgtaaccacagaatgttttc	10	17	4	10	0	0	1	0	0	0	1	2	1	1	1	3	0	2	3	3	0	3	8	rs145155372	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001005479	exon1	c.C368T	p.T123I	TAACCACTGTAAC	.	61	4	40	0	.	.	T	97983496	C	T	97983496	3	4	10	1	0	0	0	0	1	0	0	0	11210	565	20	3	370	3	OR5H6	3	97983496	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	11972866	97983496	100038934	28	1329											
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	chr3	101451412	101451412	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtgatggcaacaccatccatCccaggatttgactatcggcc	10	9	9	13	1	0	2	0	2	0	0	3	3	2	3	4	3	1	1	4	3	2	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_024548	exon6	c.C642A	p.I214I	ATCCATCCCAGGA	.	69	4	69	0	.	.	A	101451412	C	A	101451412	2	1	10	1	0	0	0	0	0	0	0	1	3285	845	30	3		3	CEP97	3	101451412	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	3467916	101451412	96571018	29	1330											
HHLA2	11148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108072349	108072349	+	Frame_Shift_Del	DEL	T	T	-																															tggaagacttgatgaagataTaattctcccttcttcatttg																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_007072	exon4	c.139delA	p.I47X	AAGATATAATTCT	.	73	23	77	0	.	.	-	108072349	T	-	108072349	7	5	10	1	0	1	0	1	0	0	0	0	7136	1406	49	0	146	0	HHLA2	3	108072349	Frame_Shift_Del	DEL	T	TCGA-W5-AA2I-01A-32D-A417-09	6620937	108072349	89950081	30	1331											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154836538	154836538	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	atgtatattttttatagattGaccaacctcgacttggcctc	10	16	6	9	1	0	2	0	1	0	1	2	3	0	2	3	1	1	1	3	1	5	8	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_007287	exon8	c.G658A	p.D220N	TAGATTGACCAAC	.	97	36	97	0	.	.	A	154836538	G	A	154836538	3	1	10	1	0	0	0	0	1	0	0	0	9693	1290	45	3	684	3	MME	3	154836538	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	46764189	154836538	43185892	31	1332											
GPR160	26996	bcgsc.ca	37	chr3	169802265	169802265	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaagcctgaaggcacagaatGcttattctcgtcactgtcct	11	11	8	11	1	2	2	1	1	1	1	4	2	3	2	2	1	2	2	2	1	4	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	GPR160	NM_014373	exon4	c.G505T	p.A169S	CAGAATGCTTATT	.	25	3	27	0	.	26	T	169802265	T	T	169802265	3	4	10	1	0	0	0	0	1	0	0	0	6704	1319	46	3	507	3	GPR160	3	169802265	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	14965727	169802265	28220165	32	1333											
MUC4	4585	hgsc.bcm.edu	37	chr3	195508971	195508971	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctgacctgtggatgcTgaggaagtgtcggtgacagg	7	9	18	7	1	0	3	0	3	0	0	1	5	0	5	2	5	1	1	2	5	1	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.A9480G	p.S3160S	GGATGCTGAGGAA	.	83	6	87	1	.	0	C	195508971	T	C	195508971	2	2	10	1	0	0	0	0	0	0	0	1	10026	1567	55	4		4	MUC4	3	195508971	Silent	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	25706706	195508971	2513459	33	1334											
LPHN3	23284	hgsc.bcm.edu	37	chr4	62845391	62845391	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	acattttgctttttccggggGctccagagtgaccgtaacac	8	12	10	11	2	0	2	0	1	0	1	2	2	2	2	3	2	2	3	3	2	1	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	LPHN3_ENST00000514591,right_upper_lobe,carcinoma,0,3	LPHN3_ENST00000514591	NM_015236	exon15	c.G2712T	p.G904G	CCGGGGGCTCCAG	.	48	2	52	0	.	0	T	62845391	G	T	62845391	2	4	10	1	0	0	0	0	0	0	0	1	8962	1190	42	3		3	LPHN3	4	62845391	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		62845391	128308885	34	1335											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	74279212	74279212	+	Frame_Shift_Del	DEL	C	C	-																															aggaatgctgtgaaaaacctCtgttggaaaaatcccactgc																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_000477	exon8	c.918delT	p.P306fs	AAACCTCTGTTGG	.	89	42	90	0	.	.	-	74279212	C	-	74279212	7	5	10	1	0	1	0	1	0	0	0	0	483	912	32	0	949	0	ALB	4	74279212	Frame_Shift_Del	DEL	C	TCGA-W5-AA2I-01A-32D-A417-09	11433821	74279212	116875064	35	1336											
BANK1	55024	hgsc.bcm.edu	37	chr4	102816512	102816512	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatccatattcaaacatgaGataccatattatgagttcca	16	12	4	9	0	1	2	1	2	0	1	3	3	3	2	3	0	2	1	3	0	5	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	BANK1,NS,carcinoma,0,1	BANK1	NM_017935	exon6	c.G954T	p.E318D	ACATGAGATACCA	.	59	3	66	0	.	0	T	102816512	G	T	102816512	3	4	10	1	0	0	0	0	1	0	0	0	1307	933	33	3	976	3	BANK1	4	102816512	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	28537300	102816512	88337764	36	1337											
SMARCA5	8467	hgsc.bcm.edu	37	chr4	144460080	144460080	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attggaatccccaagtagatCttcaggctatggtaagagat	13	11	10	7	0	2	2	1	0	1	2	3	4	3	3	2	3	0	3	2	3	5	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	SMARCA5,NS,carcinoma,0,1	SMARCA5	NM_003601	exon13	c.C1759A	p.L587I	GTAGATCTTCAGG	.	46	2	40	0	.	0	A	144460080	C	A	144460080	3	1	10	1	0	0	0	0	1	0	0	0	14825	913	32	3	1809	3	SMARCA5	4	144460080	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	41643568	144460080	46694196	37	1338											
SPATA4	132851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	177114178	177114178	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctccagctttacaatgaattGttccatggattagttcttta	10	17	6	8	0	1	1	0	1	1	0	3	2	3	2	2	1	2	3	2	1	5	8	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_144644	exon3	c.C398T	p.T133I	TGAATTGTTCCAT	.	66	22	121	0	.	.	A	177114178	G	A	177114178	3	1	10	1	0	0	0	0	1	0	0	0	15066	1377	48	3	535	3	SPATA4	4	177114178	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	32654098	177114178	14040098	38	1339											
TRIP13	9319	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	908545	908545	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgccatccgcgtggtcaatGctgtcttgacccaaattgat	9	12	9	11	2	2	2	1	2	1	0	3	2	3	2	3	1	2	1	3	1	2	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004237	exon9	c.G835A	p.A279T	GTCAATGCTGTCT	.	35	4	35	0	.	.	A	908545	G	A	908545	3	1	10	1	0	0	0	0	1	0	0	0	16618	1319	46	3	869	3	TRIP13	5	908545	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		908545	180006715	39	1340											
RNF180	285671	hgsc.bcm.edu;bcgsc.ca	37	chr5	63621158	63621158	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtgagccctgcttacGgactctggccaaagacaatc	9	10	9	13	1	2	2	0	1	2	1	3	3	2	3	2	2	3	1	2	2	3	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001113561	exon6	c.G1373T	p.R458L	GCTTACGGACTCT	.	82	4	77	0	.	.	T	63621158	G	T	63621158	3	4	10	1	0	0	0	0	1	0	0	0	13516	1116	39	2	1415	2	RNF180	5	63621158	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	62712613	63621158	117294102	40	1341											
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	96504525	96504525	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaacgtttcataaagaaatCtttaatgcatttaacatctc	16	14	4	7	1	3	1	1	0	2	1	4	2	3	1	0	0	3	2	0	0	6	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001159749	exon7	c.G811T	p.D271Y	AGAAATCTTTAAT	.	96	39	87	0	.	.	A	96504525	C	A	96504525	3	1	10	1	0	0	0	0	1	0	0	0	13430	913	32	3	891	3	RIOK2	5	96504525	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	32883367	96504525	84410735	41	1342											
LMNB1	4001	hgsc.bcm.edu;bcgsc.ca	37	chr5	126156635	126156635	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcccttcttcccgtgtGacagtatcccgagcatcctc	7	10	7	17	2	1	1	0	1	1	0	5	2	4	1	5	0	2	2	5	0	2	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_005573	exon7	c.G1194T	p.V398V	CCGTGTGACAGTA	.	54	4	60	0	.	.	T	126156635	G	T	126156635	2	4	10	1	0	0	0	0	0	0	0	1	8890	1277	45	3		3	LMNB1	5	126156635	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	29652110	126156635	54758625	42	1343											
FBN2	2201	broad.mit.edu	37	chr5	127624882	127624882	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acattcacagcgaaaagatcCgtcggtgttgatacattgac	13	10	9	9	3	1	3	1	2	0	1	3	4	2	3	1	1	2	1	1	1	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	FBN2	NM_001999	exon52	c.G6574T	p.G2192X	AAGATCCGTCGGT	.	16	4	18	0	.	858	A	127624882	C	A	127624882	4	1	10	1	0	0	0	0	0	1	0	0	5736	661	23	2	2220	2	FBN2	5	127624882	Nonsense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	1468247	127624882	53290378	43	1344											
PCDHB5	26167	hgsc.bcm.edu	37	chr5	140517100	140517100	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggtggtggcattggcctCggtgtcgtcgctcttcctct	1	14	13	13	3	2	0	0	0	2	0	6	0	3	0	3	5	0	2	3	5	0	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PCDHB5,face,carcinoma,0,1	PCDHB5	NM_015669	exon1	c.C2084A	p.S695X	TGGCCTCGGTGTC	.	46	2	64	0	.	0	A	140517100	C	A	140517100	4	1	10	1	0	0	0	0	0	1	0	0	11592	893	31	2	2086	2	PCDHB5	5	140517100	Nonsense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	12892218	140517100	40398160	44	1345											
PCDHB15	56121	hgsc.bcm.edu	37	chr5	140627110	140627110	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cgagcctccgcgctcggccaCcgccacgctgcaagtgctcc	5	5	11	20	6	0	0	0	0	0	0	3	1	2	0	6	1	3	4	6	1	1	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PCDHB15,NS,carcinoma,+1,1	PCDHB15	NM_018935	exon1	c.C1964T	p.T655I	CGGCCACCGCCAC	.	44	2	53	0	.	+1	T	140627110	C	T	140627110	3	4	10	1	0	0	0	0	1	0	0	0	11587	507	18	3	1966	3	PCDHB15	5	140627110	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	110010	140627110	40288150	45	1346											
NKX2-5	1482	hgsc.bcm.edu	37	chr5	172659642	172659642	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaatcccggggctctgaaccGcattcaagtccccgacgccg	8	6	11	16	5	2	1	1	1	1	0	4	3	4	1	5	2	1	2	5	2	3	1	rs371380388	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	NKX2-5,NS,carcinoma,+1,1	NKX2-5	NM_004387	exon2	c.C905T	p.A302V	TGAACCGCATTCA	.	35	2	39	0	.	+1	A	172659642	G	A	172659642	3	1	10	1	0	0	0	0	1	0	0	0	10500	1087	38	1	73	1	NKX2-5	5	172659642	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	32032532	172659642	8255618	46	1347											
TDRD6	221400	hgsc.bcm.edu	37	chr6	46657979	46657979	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accttttgccaagactggagAaggagagcagaaagccaaga	16	5	12	8	0	0	5	0	0	0	5	0	7	0	5	3	2	3	1	3	2	4	2	rs199792181		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,2	.	NM_001168359	exon1	c.A2114G	p.E705G	CTGGAGAAGGAGA	.	35	3	42	1	.	205	G	46657979	A	G	46657979	3	3	10	1	0	0	0	0	1	0	0	0	15793	246	9	4	2116	4	TDRD6	6	46657979	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09		46657979	124457088	47	1348											
PCLO	27445	broad.mit.edu	37	chr7	82595713	82595713	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cataggagatgctttgggtcCtgatggtgcaggtggcattt	7	13	15	6	0	0	2	0	1	0	1	1	3	1	2	1	5	2	3	1	5	1	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	PCLO	NM_014510	exon4	c.G3391C	p.G1131R	TGGGTCCTGATGG	.	23	3	27	0	.	1506	G	82595713	C	G	82595713	3	3	10	1	0	0	0	0	1	0	0	0	11630	690	24	5	12142	5	PCLO	7	82595713	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		82595713	76542950	48	1349											
AASS	10157	broad.mit.edu	37	chr7	121716630	121716630	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccatagatctcctttgaaaaGggccccattaggcctttggc	9	11	9	12	0	1	2	0	1	1	1	2	2	1	2	5	3	0	0	5	3	4	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	AASS	NM_005763	exon24	c.C2694A	p.P898P	TGAAAAGGGCCCC	.	79	3	70	0	.	123	T	121716630	G	T	121716630	2	4	10	1	0	0	0	0	0	0	0	1	24	987	35	3		3	AASS	7	121716630	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	39120917	121716630	37422033	49	1350											
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128315770	128315770	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagatgtctgtgaagggtcTgccaccgtgatcctcggggt	7	10	15	9	2	2	3	0	2	2	1	4	4	3	3	3	3	1	0	3	3	1	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001012454	exon2	c.T222C	p.S74S	AGGGTCTGCCACC	.	40	18	31	0	.	.	C	128315770	T	C	128315770	2	2	10	1	0	0	0	0	0	0	0	1	5648	1567	55	4		4	FAM71F2	7	128315770	Silent	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	6599140	128315770	30822893	50	1351											
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	138978118	138978118	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	accatgcccttccagtttccCttggagatatttggctttgg	6	15	9	11	0	0	1	0	0	0	1	2	2	2	1	4	3	1	2	4	3	1	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_173569	exon16	c.C3810G	p.P1270P	GTTTCCCTTGGAG	.	50	16	59	0	.	.	G	138978118	C	G	138978118	2	3	10	1	0	0	0	0	0	0	0	1	16954	668	24	5		5	UBN2	7	138978118	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	10662348	138978118	20160545	51	1352											
ABCB8	11194	hgsc.bcm.edu	37	chr7	150733641	150733641	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tctcctgcaggcatggtcttGggtaccctatttattggggg	5	14	13	9	0	2	0	0	0	2	0	3	0	2	0	2	5	2	3	2	5	3	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,1	.	NM_007188	exon9	c.G1122T	p.L374F	GGTCTTGGGTACC	.	48	2	21	0	.	65	T	150733641	G	T	150733641	3	4	10	1	0	0	0	0	1	0	0	0	47	1339	47	3	1156	3	ABCB8	7	150733641	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	11755523	150733641	8405022	52	1353											
MLL3	58508	hgsc.bcm.edu	37	chr7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caatacctatcacattgtctAcattgcagaataagatcttc	14	13	4	10	0	3	2	1	0	2	2	4	2	3	2	1	0	3	1	1	0	6	7	rs4024337		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	103	6	88	2	.	0	T	151921114	A	T	151921114	4	4	10	1	0	0	0	0	0	1	0	0	9670	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	1187473	151921114	7217549	53	1354											
BLK	640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11412317	11412317	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaagcactataagatcCgctgcctggatgaagggggc	11	8	13	9	1	1	3	1	2	0	1	2	4	2	4	2	3	2	2	2	3	4	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001715	exon7	c.C538T	p.R180C	AAGATCCGCTGCC	.	39	16	46	0	.	.	T	11412317	C	T	11412317	3	4	10	1	0	0	0	0	1	0	0	0	1443	652	23	1	560	1	BLK	8	11412317	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		11412317	134951705	54	1355											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	88886183	88886183	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttcctcgagcagtcgcGgtcttttgctctccatttcg	3	15	9	14	4	2	0	0	0	2	0	7	1	3	0	2	1	3	3	2	1	0	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DCAF4L2,NS,carcinoma,0,1	DCAF4L2	NM_152418	exon1	c.C17T	p.P6L	AGTCGCGGTCTTT	.	30	11	30	0	.	0	A	88886183	G	A	88886183	3	1	10	1	0	0	0	0	1	0	0	0	4296	1116	39	1	1174	1	DCAF4L2	8	88886183	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	77473866	88886183	57477839	55	1356											
PKHD1L1	93035	hgsc.bcm.edu	37	chr8	110457602	110457602	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcagccccccagtagcatCtctatcaccaacttctggaa	11	8	6	16	0	3	0	1	0	2	0	4	1	3	1	4	1	4	3	4	1	4	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKHD1L1,NS,carcinoma,0,1	PKHD1L1	NM_177531	exon38	c.C5504A	p.S1835Y	TAGCATCTCTATC	.	35	2	32	0	.	0	A	110457602	C	A	110457602	3	1	10	1	0	0	0	0	1	0	0	0	12020	913	32	3	5654	3	PKHD1L1	8	110457602	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	21571419	110457602	35906420	56	1357											
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133153423	133153423	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctttcatgcggaaggccgtgCggaaacgctctttattgttt	7	14	11	9	4	2	0	1	0	1	0	2	2	2	2	1	3	3	2	1	3	3	5	rs138181943		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004519	exon10	c.G1418A	p.R473H	GCCGTGCGGAAAC	.	35	13	44	0	0.000	.	T	133153423	C	T	133153423	3	4	10	1	0	0	0	0	1	0	0	0	8128	768	27	1	1224	1	KCNQ3	8	133153423	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	22695821	133153423	13210599	57	1358											
KIAA1432	57589	hgsc.bcm.edu;bcgsc.ca	37	chr9	5745941	5745941	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctctctaagagctggggtgCagaaggctatcacctatggg	9	10	13	9	0	3	2	1	0	2	2	4	2	3	2	1	4	2	3	1	4	4	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001206557	exon11	c.C1106A	p.A369E	GGGGTGCAGAAGG	.	69	4	63	0	.	.	A	5745941	C	A	5745941	3	1	10	1	0	0	0	0	1	0	0	0	8275	710	25	3	907	3	KIAA1432	9	5745941	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		5745941	135467490	58	1359											
SLC24A2	25769	hgsc.bcm.edu;bcgsc.ca	37	chr9	19786216	19786216	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acacatgccaataacaaagaGgatgttgaatactgctgaac	17	8	8	8	0	0	3	0	2	0	1	0	4	0	4	1	1	5	2	1	1	6	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001193288	exon1	c.C649A	p.L217I	CAAAGAGGATGTT	.	34	4	53	0	.	.	T	19786216	G	T	19786216	3	4	10	1	0	0	0	0	1	0	0	0	14521	1000	35	3	1376	3	SLC24A2	9	19786216	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	14040275	19786216	121427215	59	1360											
RNF208	727800	hgsc.bcm.edu;broad.mit.edu	37	chr9	140114946	140114946	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acgcggccccacagtactgcCggaaggtctggtagcagctg	8	6	14	13	3	1	0	0	0	1	0	1	1	1	1	3	4	4	4	3	4	3	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_031297	exon1	c.G719T	p.R240L	TACTGCCGGAAGG	.	7	5	8	0	.	.	A	140114946	C	A	140114946	3	1	10	1	0	0	0	0	1	0	0	0	13527	652	23	2	70	2	RNF208	9	140114946	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	120328730	140114946	1098485	60	1361											
WDR37	22884	bcgsc.ca	37	chr10	1170283	1170283	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aactattcgcacggactctgCcattaacaggtaaagtcaaa	15	9	7	10	2	2	0	1	0	1	0	3	1	2	1	1	2	3	2	1	2	6	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	WDR37	NM_014023	exon12	c.C1229T	p.A410V	ACTCTGCCATTAA	.	61	4	43	0	.	52	T	1170283	T	T	1170283	3	4	10	1	0	0	0	0	1	0	0	0	17351	739	26	3	1271	3	WDR37	10	1170283	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		1170283	134364464	61	1362											
GATA3	2625	hgsc.bcm.edu;bcgsc.ca	37	chr10	8100409	8100409	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	catccaccacggctccccggGgcccctctccgtctaccccc	4	6	7	24	3	2	0	0	0	2	0	5	0	4	0	9	3	1	1	9	3	1	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002051	exon3	c.G383T	p.G128V	CCCCGGGGCCCCT	.	106	5	110	0	.	.	T	8100409	G	T	8100409	3	4	10	1	0	0	0	0	1	0	0	0	6295	1232	43	3	389	3	GATA3	10	8100409	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	6930126	8100409	127434338	62	1363											
PHYH	5264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13337503	13337503	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agtgttactgtaccgaaagcGttgaatatcggcatcaggta	12	11	11	7	3	1	1	1	1	0	0	2	2	1	1	1	2	3	5	1	2	6	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_006214	exon3	c.C238T	p.R80C	GAAAGCGTTGAAT	.	150	40	132	0	.	.	A	13337503	G	A	13337503	3	1	10	1	0	0	0	0	1	0	0	0	11912	1145	40	1	806	1	PHYH	10	13337503	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	5237094	13337503	122197244	63	1364											
DNA2	1763	hgsc.bcm.edu	37	chr10	70209804	70209804	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgactacggtgttcaataGaatttgattctttgccagtt	9	16	8	8	1	2	3	1	2	1	1	2	3	2	3	2	1	2	2	2	1	4	7	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DNA2L,NS,carcinoma,0,2	DNA2L	NM_001080449	exon6	c.C920A	p.S307Y	TCAATAGAATTTG	.	32	2	72	0	.	0	T	70209804	G	T	70209804	3	4	10	1	0	0	0	0	1	0	0	0	4624	942	33	3	2326	3	DNA2	10	70209804	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	56872301	70209804	65324943	64	1365											
IDE	3416	hgsc.bcm.edu	37	chr10	94228698	94228698	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagaggtttggtatgaGcatgttcaatgagggtgtct	10	12	16	3	0	2	3	1	2	1	1	2	5	2	3	0	4	1	4	0	4	3	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	IDE,colon,carcinoma,0,1	IDE	NM_004969	exon19	c.C2258T	p.A753V	GTATGAGCATGTT	.	47	2	45	0	.	0	A	94228698	G	A	94228698	3	1	10	1	0	0	0	0	1	0	0	0	7537	971	34	3	829	3	IDE	10	94228698	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	24018894	94228698	41306049	65	1366											
PKD2L1	9033	hgsc.bcm.edu	37	chr10	102059361	102059361	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tactcacatcccagaagtccGccatgctgctgatggcctga	9	9	9	14	1	1	3	1	2	0	1	3	3	3	3	4	1	3	2	4	1	2	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKD2L1,colon,carcinoma,0,1	PKD2L1	NM_016112	exon3	c.C464A	p.A155E	AAGTCCGCCATGC	.	37	2	53	0	.	0	T	102059361	G	T	102059361	3	4	10	1	0	0	0	0	1	0	0	0	12015	1087	38	2	2009	2	PKD2L1	10	102059361	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	7830663	102059361	33475386	66	1367											
DMBT1	1755	hgsc.bcm.edu	37	chr10	124390549	124390549	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcgtgtagaaatttaccatgGtggcacctgggggacagttt	9	11	14	7	1	0	1	0	0	0	1	0	2	0	2	2	4	1	3	2	4	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DMBT1_ENST00000368915,NS,carcinoma,0,1	DMBT1_ENST00000368915	NM_007329	exon46	c.G5711T	p.G1904V	ACCATGGTGGCAC	.	66	3	99	1	.	0	T	124390549	G	T	124390549	3	4	10	1	0	0	0	0	1	0	0	0	4605	1261	44	3	5893	3	DMBT1	10	124390549	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	22331188	124390549	11144198	67	1368											
DEAF1	10522	bcgsc.ca	37	chr11	674557	674557	+	Silent	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccttccgctctgcgtcagcGtggatcttggcctggtttgt	2	15	12	12	3	3	0	1	0	2	0	5	1	5	1	3	3	2	2	3	3	0	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	DEAF1	NM_021008	exon10	c.C1482T	p.H494H	GTCAGCGTGGATC	.	25	3	41	0	.	47	A	674557	A	A	674557	2	1	10	1	0	0	0	0	0	0	0	1	4403	1136	40	1		1	DEAF1	11	674557	Silent	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		674557	134331959	68	1369											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1256439	1256439	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gctttgaaggcagctgcgagTacatcttggcccaggtacgc	8	9	13	11	2	1	1	0	1	1	0	1	2	1	1	1	3	4	5	1	3	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002458	exon22	c.T2755G	p.Y919D	TGCGAGTACATCT	.	42	13	33	0	.	.	G	1256439	T	G	1256439	3	3	10	1	0	0	0	0	1	0	0	0	10027	1638	57	4	2850	4	MUC5B	11	1256439	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	581882	1256439	133750077	69	1370											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1273681	1273681	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgtcccacctccccacCgccagtgtcctccgccccgc	3	6	7	25	4	0	0	0	0	0	0	4	0	4	0	11	0	0	0	11	0	0	0	rs377111871		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002458	exon32	c.C14972T	p.P4991L	CCCCACCGCCAGT	.	48	18	44	0	.	.	T	1273681	C	T	1273681	3	4	10	1	0	0	0	0	1	0	0	0	10027	652	23	1	15107	1	MUC5B	11	1273681	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	17242	1273681	133732835	70	1371											
CD81	975	broad.mit.edu	37	chr11	2416708	2416708	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggccgtggtggatgatgaCgccaacaacgccaaggctgt	10	6	14	11	3	0	2	0	2	0	0	0	3	0	3	3	4	2	1	3	4	3	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CD81	NM_004356	exon5	c.C417T	p.D139D	TGATGACGCCAAC	.	41	3	39	0	.	11	T	2416708	C	T	2416708	2	4	10	1	0	0	0	0	0	0	0	1	3061	535	19	1		1	CD81	11	2416708	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	1143027	2416708	132589808	71	1372											
MYEOV	26579	broad.mit.edu	37	chr11	69063836	69063836	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	accacctcctcctcctcctcCtcatcatcatcctcacttgt	6	13	1	21	0	4	0	4	0	0	0	10	0	10	0	8	0	0	0	8	0	0	1	rs147884839	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MYEOV,NS,haematopoietic_neoplasm,0,3	MYEOV	NM_138768	exon3	c.C919A	p.L307I	CTCCTCCTCATCA	.	25	3	20	0	C|1.000;A|0.000	42	A	69063836	C	A	69063836	3	1	10	1	0	0	0	0	1	0	0	0	10073	681	24	3	925	3	MYEOV	11	69063836	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	66647128	69063836	65942680	72	1373											
TRPC6	7225	hgsc.bcm.edu	37	chr11	101343020	101343020	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactgatttcacttcagaaaGtccaaatatagcccagaaca	16	9	5	11	0	2	3	2	1	0	2	3	3	3	3	2	0	2	0	2	0	5	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TRPC6,colon,carcinoma,0,1	TRPC6	NM_004621	exon8	c.C2053A	p.L685I	CAGAAAGTCCAAA	.	50	2	48	0	.	0	T	101343020	G	T	101343020	3	4	10	1	0	0	0	0	1	0	0	0	16644	1029	36	3	766	3	TRPC6	11	101343020	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	32279184	101343020	33663496	73	1374											
ATM	472	hgsc.bcm.edu	37	chr11	108218091	108218091	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaacttgtacatatagatctAggtaagtaataaaatctatg	17	13	7	4	0	2	1	0	0	2	1	2	2	2	1	0	1	2	3	0	1	10	9	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ATM_ENST00000278616,colon,carcinoma,0,6	ATM_ENST00000278616	NM_000051	exon59	c.A8670G	p.L2890L	AGATCTAGGTAAG	.	37	2	30	0	.	0	G	108218091	A	G	108218091	2	3	10	1	0	0	0	0	0	0	0	1	1108	434	15	4		4	ATM	11	108218091	Silent	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	6875071	108218091	26788425	74	1375											
TECTA	7007	hgsc.bcm.edu	37	chr11	120979961	120979961	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tccttcaatgtgctagtgagCcagttcacgccagaatcctt	9	12	8	12	1	2	2	2	1	0	1	4	2	4	2	4	0	2	2	4	0	3	4	rs142064539		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TECTA,caecum,carcinoma,0,1	TECTA	NM_005422	exon3	c.C240T	p.S80S	AGTGAGCCAGTTC	.	48	2	40	0	0.000	0	T	120979961	C	T	120979961	2	4	10	1	0	0	0	0	0	0	0	1	15806	738	26	3		3	TECTA	11	120979961	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	12761870	120979961	14026555	75	1376											
PKNOX2	63876	hgsc.bcm.edu	37	chr11	125280125	125280125	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attcccccaattccatgtccGgagtctccaataacccccag	10	9	5	17	1	1	0	0	0	1	0	5	1	4	1	7	1	1	0	7	1	3	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKNOX2,larynx,carcinoma,0,1	PKNOX2	NM_022062	exon8	c.G622T	p.G208X	ATGTCCGGAGTCT	.	22	2	23	0	.	0	T	125280125	G	T	125280125	4	4	10	1	0	0	0	0	0	1	0	0	12031	1117	39	2	640	2	PKNOX2	11	125280125	Nonsense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	4300164	125280125	9726391	76	1377											
FEZ1	9638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	125359627	125359627	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	ggtcctccgagcaggagggtCgaaggtcctcaaactcttca	9	8	12	12	2	3	0	2	0	1	0	7	3	6	1	3	4	2	1	3	4	2	1	rs138856048	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_022549	exon2	c.G47C	p.R16P	GAGGGTCGAAGGT	.	46	22	35	0	.	.	G	125359627	C	G	125359627	3	3	10	1	0	0	0	0	1	0	0	0	5856	884	31	5	1171	5	FEZ1	11	125359627	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	79502	125359627	9646889	77	1378											
ETS1	2113	hgsc.bcm.edu	37	chr11	128350152	128350152	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attgaggtcagcacggtcccGcacatagtccttgaaggtgc	9	9	12	11	2	1	2	1	2	0	0	3	2	3	2	2	3	2	2	2	3	2	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ETS1_ENST00000392668,NS,carcinoma,0,2	ETS1_ENST00000392668	NM_001143820	exon8	c.C1057T	p.R353W	GGTCCCGCACATA	.	40	2	32	0	.	0	A	128350152	G	A	128350152	3	1	10	1	0	0	0	0	1	0	0	0	5303	1086	38	1	412	1	ETS1	11	128350152	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	2990525	128350152	6656364	78	1379											
LRTM2	654429	hgsc.bcm.edu	37	chr12	1943445	1943445	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtagggggacgcttggAccagcttgcctgcaccctgc	6	8	14	13	1	0	0	0	0	0	0	0	2	0	2	3	3	4	5	3	3	1	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001039029	exon5	c.A671G	p.D224G	GCTTGGACCAGCT	.	92	2	37	0	.	.	G	1943445	A	G	1943445	3	3	10	1	0	0	0	0	1	0	0	0	9090	275	10	4	681	4	LRTM2	12	1943445	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09		1943445	131908450	79	1380											
TAS2R31	259290	hgsc.bcm.edu;broad.mit.edu	37	chr12	11183199	11183199	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aaaactccaaactgatatcaTtatggacagaaagtaaacgg	19	8	7	7	1	1	2	1	1	0	1	2	3	2	3	1	2	3	1	1	2	8	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_176885	exon1	c.A736C	p.M246L	ATATCATTATGGA	.	96	4	117	0	.	.	G	11183199	T	G	11183199	3	3	10	1	0	0	0	0	1	0	0	0	15631	1493	52	4	197	4	TAS2R31	12	11183199	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	9239754	11183199	122668696	80	1381											
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49918486	49918486	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtctcatccaaagaacagctAttcgaccagatcccgatgta	13	9	7	12	2	1	2	1	0	1	2	5	4	3	2	3	0	2	2	3	0	4	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_023071	exon13	c.A1133G	p.Y378C	ACAGCTATTCGAC	.	16	7	22	0	.	.	G	49918486	A	G	49918486	3	3	10	1	0	0	0	0	1	0	0	0	15075	449	16	4	1175	4	SPATS2	12	49918486	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	38735287	49918486	83933409	81	1382											
NAV3	89795	hgsc.bcm.edu	37	chr12	78225326	78225326	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcttccgataccaaatCttggcactactgggtcacag	9	11	8	13	1	3	0	1	0	2	0	4	1	4	0	2	2	3	2	2	2	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	NAV3,NS,carcinoma,0,1	NAV3	NM_014903	exon1	c.C85A	p.L29I	CCAAATCTTGGCA	.	46	2	32	0	.	0	A	78225326	C	A	78225326	3	1	10	1	0	0	0	0	1	0	0	0	10233	913	32	3	87	3	NAV3	12	78225326	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	28306840	78225326	55626569	82	1383											
ATP7B	540	hgsc.bcm.edu	37	chr13	52549277	52549277	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattgctggttcccaggcacGggtaggcaaagaaagcttag	11	8	13	9	1	0	1	0	0	0	1	1	1	1	1	1	4	2	6	1	4	4	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ATP7B,NS,carcinoma,0,1	ATP7B	NM_001243182	exon2	c.C79A	p.R27S	AGGCACGGGTAGG	.	31	2	31	0	.	0	T	52549277	G	T	52549277	3	4	10	1	0	0	0	0	1	0	0	0	1189	1116	39	2	4398	2	ATP7B	13	52549277	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		52549277	62620601	83	1384											
RBM26	64062	hgsc.bcm.edu	37	chr13	79918911	79918911	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atacactgtttttgttaggcCagtagatgtagacaacacct	12	13	8	8	0	0	2	0	0	0	2	0	2	0	2	2	1	2	4	2	1	5	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RBM26_ENST00000327303,trunk,malignant_melanoma,0,2	RBM26_ENST00000327303	NM_022118	exon14	c.G1996A	p.G666S	TTAGGCCAGTAGA	.	41	3	66	0	.	0	T	79918911	C	T	79918911	3	4	10	1	0	0	0	0	1	0	0	0	13178	594	21	3	978	3	RBM26	13	79918911	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	27369634	79918911	35250967	84	1385											
OR4Q3	441669	hgsc.bcm.edu	37	chr14	20216038	20216038	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttggttcttgcctgctggtGtgggggttttatccactcta	3	17	13	8	0	2	0	0	0	2	0	3	0	3	0	2	4	2	4	2	4	2	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	OR4Q3,NS,carcinoma,0,1	OR4Q3	NM_172194	exon1	c.G452T	p.C151F	GCTGGTGTGGGGG	.	71	3	78	0	.	0	T	20216038	G	T	20216038	3	4	10	1	0	0	0	0	1	0	0	0	11129	1377	48	3	454	3	OR4Q3	14	20216038	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		20216038	87133502	85	1386											
ACIN1	22985	hgsc.bcm.edu	37	chr14	23540342	23540342	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctctcacccttctttGctttctgataacatgatttt	8	18	5	10	0	3	3	1	3	3	0	4	3	3	3	1	0	3	2	1	0	2	6	rs111237085	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001164817	exon2	c.C15A	p.S5R	TTCTTTGCTTTCT	.	77	3	62	0	.	.	T	23540342	G	T	23540342	3	4	10	1	0	0	0	0	1	0	0	0	142	1310	46	3	1784	3	ACIN1	14	23540342	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	3324304	23540342	83809198	86	1387											
DLK1	8788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	101201136	101201136	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagaacctgctgcttcAgtacaacagcggggaggacc	13	5	13	10	1	1	2	1	0	0	2	1	5	1	4	2	3	6	3	2	3	5	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_003836	exon5	c.A1055C	p.Q352P	TGCTTCAGTACAA	.	17	9	25	0	.	.	C	101201136	A	C	101201136	3	2	10	1	0	0	0	0	1	0	0	0	4592	188	7	4	1073	4	DLK1	14	101201136	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	77660794	101201136	6148404	87	1388											
GABRB3	2562	broad.mit.edu	37	chr15	26793037	26793037	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctatggcattcacatcggttAgatcaggtattttaattttg	10	17	8	6	1	2	1	2	0	0	1	3	1	2	1	0	3	0	3	0	3	4	8	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	GABRB3	NM_021912	exon9	c.T1325G	p.L442R	TCGGTTAGATCAG	.	23	3	27	0	.	338	C	26793037	A	C	26793037	3	2	10	1	0	0	0	0	1	0	0	0	6203	420	15	4	100	4	GABRB3	15	26793037	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09		26793037	75738355	88	1389											
TJP1	7082	hgsc.bcm.edu;bcgsc.ca	37	chr15	30011982	30011982	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aacaccgcagcacaggtaccTttgttggatctacatgcgac	11	9	9	12	2	1	0	0	0	1	0	1	2	1	1	2	2	5	4	2	2	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_003257	exon20	c.A3002C	p.K1001T	GGTACCTTTGTTG	.	50	4	41	0	.	.	G	30011982	T	G	30011982	3	3	10	1	0	0	0	0	1	0	0	0	15989	1623	56	4	2280	4	TJP1	15	30011982	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	3218945	30011982	72519410	89	1390											
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35082738	35082738	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatccagacagagtatttacGctcagggggagcaataatct	14	9	10	8	1	2	2	1	0	1	2	3	3	3	3	1	2	2	3	1	2	5	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_005159	exon7	c.C1009T	p.R337C	ATTTACGCTCAGG	.	49	24	61	0	.	.	A	35082738	G	A	35082738	3	1	10	1	0	0	0	0	1	0	0	0	195	1087	38	1	128	1	ACTC1	15	35082738	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	5070756	35082738	67448654	90	1391											
ZFYVE19	84936	ucsc.edu	37	chr15	41099910	41099910	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcgtgtggggcggggcAgggcagggaagggaagggcg	6	3	27	5	3	0	0	0	0	0	0	0	2	0	2	0	9	0	2	0	9	2	0	rs62018606		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	ZFYVE19	NM_001077268	exon1	c.A123G	p.A41A	CGGGGCAGGGCAG	.	21	7	12	0	.	31	G	41099910	A	G	41099910	2	3	10	1	0	0	0	0	0	0	0	1	17723	175	7	4		4	ZFYVE19	15	41099910	Silent	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	6017172	41099910	61431482	91	1392											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43244513	43244513	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tccggctccacagtgaagtgCgtgaaaaatgcaagctccaa	13	7	10	11	2	0	2	0	2	0	0	3	2	3	2	3	1	3	3	3	1	5	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_174916	exon45	c.G4969A	p.A1657T	GAAGTGCGTGAAA	.	36	11	31	0	.	.	T	43244513	C	T	43244513	3	4	10	1	0	0	0	0	1	0	0	0	16962	768	27	1	292	1	UBR1	15	43244513	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	2144603	43244513	59286879	92	1393											
UNC13C	440279	hgsc.bcm.edu	37	chr15	54592537	54592537	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tagttgatgaatttgctatgCgttatggaattgaatccatt	11	17	9	4	1	0	3	0	3	0	0	1	4	1	4	1	1	2	3	1	1	6	7	rs370227736		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	UNC13C_ENST00000260323,colon,carcinoma,0,2	UNC13C_ENST00000260323	NM_001080534	exon11	c.C4234T	p.R1412C	GCTATGCGTTATG	.	65	3	82	0	.	0	T	54592537	C	T	54592537	3	4	10	1	0	0	0	0	1	0	0	0	17046	768	27	1	4276	1	UNC13C	15	54592537	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	11348024	54592537	47938855	93	1394											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	81212524	81212524	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacacttttgaccactgtctTggcctccttgtcaagtctgg	7	14	8	12	0	3	1	1	1	2	0	4	1	4	1	3	2	1	0	3	2	2	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_018689	exon14	c.T1887A	p.L629L	CTGTCTTGGCCTC	.	49	4	39	0	.	.	A	81212524	T	A	81212524	2	1	10	1	0	0	0	0	0	0	0	1	8255	1799	63	5		5	KIAA1199	15	81212524	Silent	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	26619987	81212524	21318868	94	1395											
IL32	9235	hgsc.bcm.edu	37	chr16	3119299	3119300	+	Frame_Shift_Ins	INS	-	-	C																															agtcctacggagccccacggINSggggacaaggaggagctgac																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004221	exon7	c.510_511insC	p.R170fs	CCCACGGGGGGAC	.	103	21	81	0	.	.	C	3119300	-	C	3119299	7	5	10	1	0	1	1	0	0	0	0	0	7736	1219	43	0	532	0	IL32	16	3119299	Frame_Shift_Ins	INS	-	TCGA-W5-AA2I-01A-32D-A417-09		3119299	87235454	95	1396											
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3729751	3729751	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atctggcaatcgtccccaggTtggacaccagctcttcctgt	7	11	9	14	1	2	0	0	0	2	0	5	1	4	1	4	3	1	3	4	3	1	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_016292	exon5	c.A512G	p.N171S	CCCAGGTTGGACA	.	32	11	22	0	.	.	C	3729751	T	C	3729751	3	2	10	1	0	0	0	0	1	0	0	0	16516	1725	60	4	1658	4	TRAP1	16	3729751	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	610452	3729751	86625002	96	1397											
RBL2	5934	hgsc.bcm.edu	37	chr16	53513070	53513070	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttattgtttgccaggtcaCaaaagaagataagtccttcc	12	13	7	9	0	2	2	1	0	1	2	4	2	4	2	3	1	1	1	3	1	5	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RBL2,NS,carcinoma,0,1	RBL2	NM_005611	exon18	c.C2708A	p.T903K	AGGTCACAAAAGA	.	22	2	21	0	.	0	A	53513070	C	A	53513070	3	1	10	1	0	0	0	0	1	0	0	0	13162	478	17	3	2778	3	RBL2	16	53513070	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	49783319	53513070	36841683	97	1398											
SLC16A11	162515	ucsc.edu;bcgsc.ca	37	chr17	6946310	6946310	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggcgaaagccgagaagacGaagcccagcgaggcgaggac	13	1	16	11	5	0	2	0	0	0	2	0	8	0	3	2	3	3	0	2	3	3	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	SLC16A11	NM_153357	exon2	c.C357A	p.F119L	GAAGACGAAGCCC	.	44	4	47	0	.	25	T	6946310	G	T	6946310	3	4	10	1	0	0	0	0	1	0	0	0	14459	1049	37	2	1070	2	SLC16A11	17	6946310	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09		6946310	74248900	98	1399											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	7578509	7578509	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacccacagctgcacagggcAggtcttggccagttggcaaa	11	6	12	12	0	1	0	0	0	1	0	1	0	1	0	2	4	3	5	2	4	2	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TP53_ENST00000545858,NS,carcinoma,+1,28	TP53_ENST00000545858	NM_000546	exon5	c.T421C	p.C141R	CAGGGCAGGTCTT	.	13	8	13	0	.	+1	G	7578509	A	G	7578509	3	3	10	1	0	0	0	0	1	0	0	0	16442	188	7	4	877	4	TP53	17	7578509	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	632199	7578509	73616701	99	1400											
LRRC48	83450	broad.mit.edu	37	chr17	17907739	17907739	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gagaagatgatcctagaatgCagtgctgacatcagtgagtt	13	10	12	6	0	1	6	1	3	0	3	2	7	2	6	1	0	2	3	1	0	3	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	LRRC48	NM_031294	exon10	c.C1062T	p.C354C	AGAATGCAGTGCT	.	42	3	54	0	.	49	T	17907739	C	T	17907739	2	4	10	1	0	0	0	0	0	0	0	1	9050	718	25	3		3	LRRC48	17	17907739	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	10329230	17907739	63287471	100	1401											
TRAF4	9618	broad.mit.edu	37	chr17	27076180	27076180	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagcccaaccttgagtgctTcagcccagccttctacacac	10	8	6	17	0	2	1	1	1	1	0	2	1	2	1	4	0	6	1	4	0	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	TRAF4	NM_004295	exon7	c.T998G	p.F333C	AGTGCTTCAGCCC	.	51	3	41	0	.	20	G	27076180	T	G	27076180	3	3	10	1	0	0	0	0	1	0	0	0	16504	1783	62	4	1024	4	TRAF4	17	27076180	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	9168441	27076180	54119030	101	1402											
CPD	1362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28772983	28772983	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accattcctacaaagacttaTcagagtttctgagaggactt	13	12	7	9	0	2	3	1	1	1	3	3	5	3	4	2	1	1	1	2	1	3	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001304	exon12	c.T2818C	p.S940P	GACTTATCAGAGT	.	43	16	54	0	.	.	C	28772983	T	C	28772983	3	2	10	1	0	0	0	0	1	0	0	0	3821	1435	50	4	2864	4	CPD	17	28772983	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	1696803	28772983	52422227	102	1403											
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40010293	40010293	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcctataatgaagacatcaTctttgtaatagcaaatggct	14	13	6	8	0	2	2	1	1	1	1	3	2	3	2	1	1	1	3	1	1	6	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_018143	exon2	c.A1826G	p.D609G	ACATCATCTTTGT	.	46	21	58	0	.	.	C	40010293	T	C	40010293	3	2	10	1	0	0	0	0	1	0	0	0	8410	1435	50	4	304	4	KLHL11	17	40010293	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	11237310	40010293	41184917	103	1404											
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56540279	56540279	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtattgtgctattttcaacaGgctgagctgtgtggatggta	8	15	13	5	0	1	1	1	1	0	0	1	2	1	2	0	3	3	5	0	3	4	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001080439	exon4	c.C1406T	p.P469L	TCAACAGGCTGAG	.	49	22	35	0	.	.	A	56540279	G	A	56540279	3	1	10	1	0	0	0	0	1	0	0	0	7440	1000	35	3	396	3	HSF5	17	56540279	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	16529986	56540279	24654931	104	1405											
TLK2	11011	broad.mit.edu	37	chr17	60598179	60598179	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	accagagcttgtgcagcgtcGgatccttgagtgataaagaa	12	9	12	8	2	0	4	0	2	0	2	2	5	1	5	2	1	3	2	2	1	3	3	rs200158456		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TLK2_ENST00000346027,NS,carcinoma,0,1	TLK2	NM_001112707	exon3	c.G127A	p.G43R	AGCGTCGGATCCT	.	83	3	71	1	.	223	A	60598179	G	A	60598179	3	1	10	1	0	0	0	0	1	0	0	0	16004	1117	39	1	133	1	TLK2	17	60598179	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	4057900	60598179	20597031	105	1406											
CDC42EP4	23580	ucsc.edu	37	chr17	71282351	71282351	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcatgtcacgctgctcccGctcccccctggtcaccgact	5	8	8	20	3	2	0	2	0	0	0	4	1	4	0	5	1	2	4	5	1	0	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CDC42EP4	NM_012121	exon2	c.C289T	p.R97W	GCTCCCGCTCCCC	.	41	4	34	0	.	19	A	71282351	G	A	71282351	3	1	10	1	0	0	0	0	1	0	0	0	3100	1086	38	1	785	1	CDC42EP4	17	71282351	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	10684172	71282351	9912859	106	1407											
CD300C	10871	hgsc.bcm.edu	37	chr17	72540765	72540765	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacccgggaacacggacaccTcaacctcgacaatgggatca	13	4	9	15	3	2	0	2	0	0	0	3	4	2	3	3	3	2	0	3	3	3	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CD300C,caecum,carcinoma,0,1	CD300C	NM_006678	exon2	c.A383T	p.E128V	GACACCTCAACCT	.	67	3	58	0	.	0	A	72540765	T	A	72540765	3	1	10	1	0	0	0	0	1	0	0	0	3019	1551	54	5	303	5	CD300C	17	72540765	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	1258414	72540765	8654445	107	1408											
CABYR	26256	hgsc.bcm.edu	37	chr18	21736349	21736349	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaactgttcatatatcatCtgtctataacgatgtgcctg	10	15	7	9	1	5	0	3	0	2	0	5	1	5	0	1	0	3	1	1	0	5	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CABYR,NS,carcinoma,0,1	CABYR	NM_012189	exon4	c.C884A	p.S295Y	TATCATCTGTCTA	.	46	2	49	0	.	0	A	21736349	C	A	21736349	3	1	10	1	0	0	0	0	1	0	0	0	2554	913	32	3	894	3	CABYR	18	21736349	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		21736349	56340899	108	1409											
WDR7	23335	hgsc.bcm.edu	37	chr18	54424284	54424284	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gaagtactggatgaagtttgCctggatcgccttggaatgct	9	12	13	7	1	0	1	0	1	0	0	1	5	0	4	2	3	3	3	2	3	4	3	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	WDR7,NS,carcinoma,0,1	WDR7	NM_052834	exon15	c.C2460T	p.C820C	AGTTTGCCTGGAT	.	48	2	52	0	.	0	T	54424284	C	T	54424284	2	4	10	1	0	0	0	0	0	0	0	1	17380	747	26	3		3	WDR7	18	54424284	Silent	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	32687935	54424284	23652964	109	1410											
CPLX4	339302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	56963944	56963944	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacccctcacatcacggaacActtctgctccgctgtctgct	7	10	6	18	2	4	0	2	0	2	0	5	1	5	1	3	1	3	3	3	1	1	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CPLX4,NS,haematopoietic_neoplasm,0,1	CPLX4	NM_181654	exon3	c.T469A	p.C157S	CGGAACACTTCTG	.	23	4	24	0	.	0	T	56963944	A	T	56963944	3	4	10	1	0	0	0	0	1	0	0	0	3830	159	6	5	17	5	CPLX4	18	56963944	Missense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	2539660	56963944	21113304	110	1411											
C19orf26	255057	hgsc.bcm.edu	37	chr19	1235857	1235857	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccaccagcgtgccccccaCgaacagcgacatcaccacca	12	2	6	21	3	1	0	1	0	0	0	1	2	1	0	7	0	4	0	7	0	1	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_152769	exon3	c.G166A	p.V56M	CCCCCACGAACAG	.	59	4	36	0	.	.	T	1235857	C	T	1235857	3	4	10	1	0	0	0	0	1	0	0	0	1928	536	19	1	1223	1	C19orf26	19	1235857	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		1235857	57893126	111	1412											
MUM1	84939	hgsc.bcm.edu	37	chr19	1360675	1360675	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caaaggaggcagctgggcagCcccgtccttgccctccgggg	6	5	15	15	2	0	0	0	0	0	0	2	1	2	1	5	5	3	3	5	5	1	1	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUM1,NS,malignant_melanoma,0,1	MUM1	NM_032853	exon5	c.C758T	p.A253V	GGGCAGCCCCGTC	.	48	3	24	0	.	0	T	1360675	C	T	1360675	3	4	10	1	0	0	0	0	1	0	0	0	10033	739	26	3	772	3	MUM1	19	1360675	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	124818	1360675	57768308	112	1413											
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	10624541	10624541	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcggctgtgggtgcacCggggctgcctgtggagccgc	2	6	20	13	4	0	0	0	0	0	0	0	1	0	1	4	6	3	3	4	6	0	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_030760	exon2	c.G1147A	p.G383S	GTGCACCGGGGCT	.	30	5	27	0	.	.	T	10624541	C	T	10624541	3	4	10	1	0	0	0	0	1	0	0	0	13849	652	23	1	53	1	S1PR5	19	10624541	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	9263866	10624541	48504442	113	1414											
ZNF441	126068	hgsc.bcm.edu	37	chr19	11891967	11891967	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acatgaaagaattcacactgGggagagaccctataaatgta	17	8	9	7	0	1	3	1	1	0	2	1	5	1	4	1	2	0	1	1	2	6	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ZNF441_ENST00000357901,NS,carcinoma,0,2	ZNF441_ENST00000357901	NM_152355	exon4	c.G1328T	p.G443V	ACACTGGGGAGAG	.	33	2	57	0	.	0	T	11891967	G	T	11891967	3	4	10	1	0	0	0	0	1	0	0	0	17971	1232	43	3	1342	3	ZNF441	19	11891967	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	1267426	11891967	47237016	114	1415											
HSH2D	84941	hgsc.bcm.edu	37	chr19	16268032	16268032	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	attttcaggcctccccaaagCcagtcctgtgtcaccaatca	10	10	6	15	0	3	0	3	0	0	0	5	0	5	0	6	1	1	0	6	1	2	2	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_032855	exon8	c.C487T	p.P163S	CCAAAGCCAGTCC	.	71	4	70	0	.	.	T	16268032	C	T	16268032	3	4	10	1	0	0	0	0	1	0	0	0	7443	739	26	3	505	3	HSH2D	19	16268032	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	4376065	16268032	42860951	115	1416											
ZNF536	9745	broad.mit.edu	37	chr19	30934714	30934714	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgggcagtcagatggCgctcctggccaaccagctgg	7	6	14	14	1	1	1	1	0	0	1	2	1	2	1	4	4	2	3	4	4	1	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ZNF536,NS,carcinoma,-1,1	ZNF536	NM_014717	exon2	c.C245T	p.A82V	AGATGGCGCTCCT	.	65	5	55	0	.	424	T	30934714	C	T	30934714	3	4	10	1	0	0	0	0	1	0	0	0	18031	768	27	1	247	1	ZNF536	19	30934714	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	14666682	30934714	28194269	116	1417											
PEPD	5184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	33953903	33953903	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agaaacatggtggcttacctTtccaactcatattctttcat	11	15	5	10	0	3	1	2	0	1	1	4	1	4	1	2	2	3	1	2	2	4	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_000285	exon9	c.A669C	p.E223D	TTACCTTTCCAAC	.	49	20	72	0	.	.	G	33953903	T	G	33953903	3	3	10	1	0	0	0	0	1	0	0	0	11775	1838	64	4	840	4	PEPD	19	33953903	Missense_Mutation	SNP	T	TCGA-W5-AA2I-01A-32D-A417-09	3019189	33953903	25175080	117	1418											
CAPN12	147968	hgsc.bcm.edu	37	chr19	39234742	39234742	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgaaaaagctgcaggcgccCggctccgaccccagcctcct	8	4	10	19	4	0	0	0	0	0	0	2	2	2	0	7	2	3	3	7	2	2	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_144691	exon1	c.G64A	p.G22R	GGCGCCCGGCTCC	.	87	4	69	0	.	.	T	39234742	C	T	39234742	3	4	10	1	0	0	0	0	1	0	0	0	2643	652	23	1	2179	1	CAPN12	19	39234742	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	5280839	39234742	19894241	118	1419											
ZNF233	353355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44777811	44777812	+	Frame_Shift_Del	DEL	AG	AG	-																															ctcacatctgcaacctcatcAgagagtcagcacaggagaga																								novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001207005	exon5	c.997_998del	p.333_333del	CTCATCAGAGAGT	.	30	11	34	0	.	.	-	44777812	AG	-	44777811	7	5	10	1	0	1	0	1	0	0	0	0	17844	188	7	0	1012	0	ZNF233	19	44777811	Frame_Shift_Del	DEL	AG	TCGA-W5-AA2I-01A-32D-A417-09	5543069	44777811	14351172	119	1420											
CASS4	57091	ucsc.edu	37	chr20	55033541	55033541	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcagcagcagccagcccgCggagatcatcactcagagca	11	4	10	16	2	4	2	4	0	0	2	4	3	4	2	3	1	5	3	3	1	0	0	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CASS4,colon,carcinoma,+1,1	CASS4	NM_020356	exon6	c.C2099T	p.A700V	AGCCCGCGGAGAT	.	39	4	34	0	.	121	T	55033541	C	T	55033541	3	4	10	1	0	0	0	0	1	0	0	0	2701	768	27	1	2121	1	CASS4	20	55033541	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09		55033541	7991979	120	1421											
UCKL1	54963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62577877	62577877	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gccgcccggcggtgtagatgGtacgcttgcttgtacgcagc	5	9	15	12	5	0	1	0	0	0	1	0	1	0	1	2	3	4	6	2	3	3	5	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_017859	exon2	c.C233T	p.T78I	TAGATGGTACGCT	.	47	9	48	0	.	.	A	62577877	G	A	62577877	3	1	10	1	0	0	0	0	1	0	0	0	16985	1261	44	3	1469	3	UCKL1	20	62577877	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	7544336	62577877	447643	121	1422											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	32361350	32361350	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagcctgcctcttgtactgAtaccactgatgagaaatttc	10	13	7	11	0	2	3	1	3	1	1	3	4	2	3	3	0	4	1	3	0	3	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004006	exon40	c.T5640A	p.Y1880X	GTACTGATACCAC	.	17	13	23	0	.	.	T	32361350	A	T	32361350	4	4	10	1	0	0	0	0	0	1	0	0	4608	340	12	5	5725	5	DMD	23	32361350	Nonsense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09		32361350	122909210	122	1423											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	51640334	51640334	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggtcaagtacttgatgcttAaggactacacaaaggtgccc	12	10	10	9	0	1	1	1	1	0	0	1	2	1	2	1	3	4	2	1	3	5	4	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001005333	exon6	c.A1621T	p.K541X	ATGCTTAAGGACT	.	16	8	24	0	.	.	T	51640334	A	T	51640334	4	4	10	1	0	0	0	0	0	1	0	0	9233	363	13	5	1639	5	MAGED1	23	51640334	Nonsense_Mutation	SNP	A	TCGA-W5-AA2I-01A-32D-A417-09	19278984	51640334	103630226	123	1424											
HDX	139324	bcgsc.ca	37	chrX	83581279	83581279	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcttttgaatctcgagCtcattttcaatgaatttgac	9	19	6	7	1	3	3	2	3	1	0	4	4	3	3	0	0	2	2	0	0	3	7	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	HDX	NM_144657	exon9	c.G1854T	p.E618D	CTCGAGCTCATTT	.	30	3	45	0	.	124	A	83581279	A	A	83581279	3	1	10	1	0	0	0	0	1	0	0	0	7067	796	28	3	226	3	HDX	23	83581279	Missense_Mutation	SNP	C	TCGA-W5-AA2I-01A-32D-A417-09	31940945	83581279	71689281	124	1425											
PCDH11X	27328	broad.mit.edu	37	chrX	91133148	91133148	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	catttgatagagaaaaacaaGaatcttacactttctatgta	17	13	5	6	0	2	3	0	1	2	2	2	4	2	3	0	0	2	1	0	0	8	6	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	PCDH11X	NM_001168363	exon2	c.G1909A	p.E637K	AAACAAGAATCTT	.	46	31	96	1	.	714	A	91133148	G	A	91133148	3	1	10	1	0	0	0	0	1	0	0	0	11555	943	33	3	1915	3	PCDH11X	23	91133148	Missense_Mutation	SNP	G	TCGA-W5-AA2I-01A-32D-A417-09	7551869	91133148	64137412	125	1426											
CA6	765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9027751	9027751	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgactggccttgacgttcAggacatgctgcccaggaacc	8	8	11	14	1	1	2	1	2	0	0	1	4	1	4	4	3	3	2	4	3	1	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001270500	exon6	c.A605G	p.Q202R	ACGTTCAGGACAT	.	31	25	28	0	.	.	G	9027751	A	G	9027751	3	3	11	1	0	0	0	0	1	0	0	0	2539	188	7	4	627	4	CA6	1	9027751	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09		9027751	240222870	1	1427											
HNRNPCL1	343069	hgsc.bcm.edu	37	chr1	12907275	12907275	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgtgcttaagagtcatcctGgccattggtgctgtctctgt	6	15	11	9	0	2	1	1	0	1	1	4	1	3	1	2	2	2	2	2	2	1	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HNRNPCL1,NS,neuroblastoma,0,1	HNRNPCL1	NM_001013631	exon2	c.C868G	p.Q290E	CATCCTGGCCATT	.	75	4	60	0	.	0	C	12907275	G	C	12907275	3	2	11	1	0	0	0	0	1	0	0	0	7304	1357	47	5	15	5	HNRNPCL1	1	12907275	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	3879524	12907275	236343346	2	1428											
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	chr1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actccagctggtcatcccccTgatcttcattaacatcatca	10	12	4	15	0	5	1	4	1	1	0	7	1	7	1	3	1	2	1	3	1	1	2	rs74587302	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HNRNPCL1,NS,neuroblastoma,0,1	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	62	10	49	0	.	68	C	12907358	T	C	12907358	3	2	11	1	0	0	0	0	1	0	0	0	7304	1580	55	4	98	4	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	83	12907358	236343263	3	1429											
CLCNKB	1188	broad.mit.edu	37	chr1	16383402	16383402	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	aacctgacaaatccgccagcCccaaagtgagccggcccagc	12	3	9	17	2	0	2	0	2	0	0	1	2	1	2	7	1	4	0	7	1	3	0	rs6698427	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG	.	111	4	102	0	.	50	T	16383402	C	T	16383402	2	4	11	1	0	0	0	0	0	0	0	1	3493	610	22	3		3	CLCNKB	1	16383402	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	3476044	16383402	232867219	4	1430											
C1orf172	126695	hgsc.bcm.edu	37	chr1	27278443	27278443	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgctggccatcccgccggctGgggggtgcacgatcagggct	4	6	17	14	4	1	0	1	0	0	0	2	1	2	0	3	6	1	4	3	6	0	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,1	.	NM_152365	exon2	c.C429A	p.P143P	CCGGCTGGGGGGT	.	17	2	24	0	.	38	T	27278443	G	T	27278443	2	4	11	1	0	0	0	0	0	0	0	1	2026	1335	47	3		3	C1orf172	1	27278443	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	10895041	27278443	221972178	5	1431											
ZMYM6	9204	hgsc.bcm.edu	37	chr1	35472571	35472571	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctttattttgtggaagacaGtcattcataatttgctgatg	10	17	8	6	0	2	2	2	1	0	1	2	3	2	3	1	1	1	1	1	1	3	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_007167	exon12	c.C1794A	p.D598E	AAGACAGTCATTC	.	94	4	104	0	.	.	T	35472571	G	T	35472571	3	4	11	1	0	0	0	0	1	0	0	0	17762	1020	36	3	2203	3	ZMYM6	1	35472571	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	8194128	35472571	213778050	6	1432											
MACF1	23499	hgsc.bcm.edu	37	chr1	39766025	39766025	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aaggctgtctgtgactacagGcagatcgaggtgaggaggta	11	8	16	6	1	1	3	0	2	1	1	2	5	1	4	0	5	1	3	0	5	3	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_012090	exon23	c.G2640T	p.R880S	CTACAGGCAGATC	.	66	5	19	0	.	.	T	39766025	G	T	39766025	3	4	11	1	0	0	0	0	1	0	0	0	9190	1194	42	3	2722	3	MACF1	1	39766025	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	4293454	39766025	209484596	7	1433											
VCAM1	7412	hgsc.bcm.edu;bcgsc.ca	37	chr1	101186235	101186235	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atcctgttagttttgggaacGaacactcttacctgtgcaca	10	13	8	10	1	1	0	0	0	1	0	2	2	2	1	2	1	4	3	2	1	4	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	VCAM1,NS,carcinoma,0,1	VCAM1	NM_001078	exon2	c.G268A	p.E90K	GGGAACGAACACT	.	75	4	45	0	.	0	A	101186235	G	A	101186235	3	1	11	1	0	0	0	0	1	0	0	0	17197	1059	37	1	274	1	VCAM1	1	101186235	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	61420210	101186235	148064386	8	1434											
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	108247684	108247684	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agtctggtcttatgttagacCtaaaaaaaggaaaaaaataa	20	10	7	4	0	2	1	0	0	2	1	2	2	2	2	1	2	0	1	1	2	10	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006113	exon17	c.1503-1G>T	.	TTAGACCTAAAAA	.	65	25	34	0	.	.	A	108247684	C	A	108247684	5	1	11	1	0	0	0	0	0	0	1	0	17193	695	24	3	1114	3	VAV3	1	108247684	Splice_Site	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	7061449	108247684	141002937	9	1435											
GOLPH3L	55204	hgsc.bcm.edu	37	chr1	150667291	150667291	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ttgcttatttcagtgcgacgGgcccggtgagttaaagtggt	7	13	14	7	3	1	1	1	1	0	0	1	2	1	1	1	3	2	2	1	3	3	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_018178	exon2	c.C24A	p.A8A	GCGACGGGCCCGG	.	76	4	47	0	.	.	T	150667291	G	T	150667291	2	4	11	1	0	0	0	0	0	0	0	1	6608	1219	43	3		3	GOLPH3L	1	150667291	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	42419607	150667291	98583330	10	1436											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu	37	chr1	151109372	151109372	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agaccccaaagagagcagagCggccatgcaggttcacaggc	13	3	13	12	1	1	3	1	0	0	3	1	4	1	3	3	3	3	3	3	3	1	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	SEMA6C,NS,carcinoma,0,1	SEMA6C	NM_001178061	exon11	c.G935A	p.R312H	GCAGAGCGGCCAT	.	59	4	54	0	.	0	T	151109372	C	T	151109372	3	4	11	1	0	0	0	0	1	0	0	0	14095	768	27	1	1993	1	SEMA6C	1	151109372	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	442081	151109372	98141249	11	1437											
NAV1	89796	hgsc.bcm.edu	37	chr1	201709171	201709171	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gatgcttcatctgcccctgcCcagatccggaagaacggtga	9	8	11	13	2	2	3	1	1	1	2	3	5	3	4	4	2	4	1	4	2	2	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001167738	exon1	c.C20A	p.P7H	CCCTGCCCAGATC	.	93	4	106	0	.	.	A	201709171	C	A	201709171	3	1	11	1	0	0	0	0	1	0	0	0	10231	623	22	3	1260	3	NAV1	1	201709171	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	50599799	201709171	47541450	12	1438											
OR2T12	127064	ucsc.edu	37	chr1	248458419	248458419	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gtagcaacagcctgcaggagGccgtcagctgcacccaggag	10	4	14	13	1	1	0	1	0	0	0	1	2	1	2	3	3	6	5	3	3	2	1	rs35294053	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	OR2T12	NM_001004692	exon1	c.C462G	p.G154G	CAGGAGGCCGTCA	.	39	7	22	0	G|0.833;C|0.167	113	C	248458419	G	C	248458419	2	2	11	1	0	0	0	0	0	0	0	1	11067	1190	42	5		5	OR2T12	1	248458419	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	46749248	248458419	792202	13	1439											
SOS1	6654	hgsc.bcm.edu	37	chr2	39222277	39222277	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cacctacttgagtgaaaaggGctcgaatgatcggaatcaaa	15	8	10	8	2	1	3	1	3	0	0	3	5	1	4	1	2	1	1	1	2	6	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005633	exon20	c.C3333A	p.S1111R	AAAAGGGCTCGAA	.	91	5	68	0	.	.	T	39222277	G	T	39222277	3	4	11	1	0	0	0	0	1	0	0	0	14990	1194	42	3	684	3	SOS1	2	39222277	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		39222277	203977096	14	1440											
STON1-GTF2A1L	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48896871	48896871	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctctttttaggattctaattCtcaggtggatttaagcattc	9	18	7	7	0	3	0	1	0	3	0	5	2	3	2	0	3	1	1	0	3	3	9	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	STON1-GTF2A1L	NM_001198593	exon9	c.C3101T	p.S1034F	CTAATTCTCAGGT	.	95	42	56	1	.	180	T	48896871	C	T	48896871	3	4	11	1	0	0	0	0	1	0	0	0	15373	913	32	3	3131	3	STON1-GTF2A1L	2	48896871	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	9674594	48896871	194302502	15	1441											
NRXN1	9378	hgsc.bcm.edu	37	chr2	50699451	50699451	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aataccttcacatcctctctCgatctgtccgttgcagaaaa	11	12	5	13	2	3	1	1	0	2	1	7	2	5	1	3	0	2	2	3	0	4	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	NRXN1_ENST00000536085,NS,carcinoma,0,3	NRXN1_ENST00000536085	NM_001135659	exon17	c.G3349T	p.E1117X	CTCTCTCGATCTG	.	70	4	41	0	.	0	A	50699451	C	A	50699451	4	1	11	1	0	0	0	0	0	1	0	0	10713	893	31	2	1589	2	NRXN1	2	50699451	Nonsense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	1802580	50699451	192499922	16	1442											
AAK1	22848	hgsc.bcm.edu	37	chr2	69741780	69741780	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgctgctgctgctgCtggtagaaattctgcattag	6	15	12	8	0	1	1	0	0	1	1	1	1	1	1	0	1	7	9	0	1	3	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	AAK1_ENST00000409085,NS,carcinoma,0,2	AAK1_ENST00000409085	NM_014911	exon13	c.G1599C	p.Q533H	CTGCTGCTGGTAG	.	72	6	47	0	.	0	G	69741780	C	G	69741780	3	3	11	1	0	0	0	0	1	0	0	0	16	796	28	5	1326	5	AAK1	2	69741780	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	19042329	69741780	173457593	17	1443											
HOXD8	0	broad.mit.edu	37	chr2	176993750	176993750	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	accctccccagcgcgagcccTttttcccgcctcagaacgtt	6	9	7	19	4	1	1	1	0	0	1	3	2	3	1	6	0	3	1	6	0	1	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	HOXD8	.	.	.	.	GAGCCCTTTTTCC	.	52	3	41	0	.	24	C	176993750	T	C	176993750	1	2	11	0	1	0	0	0	0	0	0	0	7366	1624	56	4		4	HOXD8	2	176993750	RNA	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	107251970	176993750	66205623	18	1444											
HOXD4	3233	broad.mit.edu	37	chr2	177016418	177016418	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggaccccaagttccctccGtgcgaggagtatttgcaggg	7	9	14	11	2	0	0	0	0	0	0	2	3	2	2	4	3	2	3	4	3	2	3	rs376860683	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	HOXD4	NM_014621	exon1	c.G57T	p.P19P	CCCTCCGTGCGAG	.	140	5	102	0	.	32	T	177016418	G	T	177016418	2	4	11	1	0	0	0	0	0	0	0	1	7365	1132	40	2		2	HOXD4	2	177016418	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	22668	177016418	66182955	19	1445											
TTN	7273	hgsc.bcm.edu	37	chr2	179650369	179650369	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catatccatgttctgtcttaGgaacagaaatttttgaaaca	14	14	6	7	0	2	2	0	1	2	1	3	3	3	3	1	1	2	1	1	1	5	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001267550	exon15	c.C2471A	p.P824H	GTCTTAGGAACAG	.	94	4	43	0	.	.	T	179650369	G	T	179650369	3	4	11	1	0	0	0	0	1	0	0	0	16797	1000	35	3	108909	3	TTN	2	179650369	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	2633951	179650369	63549004	20	1446											
SGOL2	151246	hgsc.bcm.edu	37	chr2	201407335	201407335	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctttctactgtcagctagcAagaagaaacgaattagtaaa	16	10	7	8	1	2	2	1	0	1	2	2	3	2	2	1	0	4	3	1	0	9	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001160046	exon5	c.A421T	p.K141X	GCTAGCAAGAAGA	.	83	4	42	0	.	.	T	201407335	A	T	201407335	4	4	11	1	0	0	0	0	0	1	0	0	14271	131	5	5	435	5	SGOL2	2	201407335	Nonsense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	21756966	201407335	41792038	21	1447											
ALS2	57679	hgsc.bcm.edu	37	chr2	202593249	202593249	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctacctgggcatggaccaGggcatcattaaagagaatga	13	7	12	9	0	1	2	1	1	0	1	1	4	1	3	3	3	1	2	3	3	4	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020919	exon15	c.C2827A	p.L943M	GGACCAGGGCATC	.	72	3	34	0	.	.	T	202593249	G	T	202593249	3	4	11	1	0	0	0	0	1	0	0	0	546	991	35	3	2226	3	ALS2	2	202593249	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	1185914	202593249	40606124	22	1448											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttgatccccataagcatgacGacctatgatgataggtttta	12	13	8	8	1	0	4	0	4	0	0	1	5	1	4	3	1	1	2	3	1	4	6	rs121913499	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	79	41	35	0	.	0	A	209113113	G	A	209113113	3	1	11	1	0	0	0	0	1	0	0	0	7538	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	6519864	209113113	34086260	23	1449											
ERBB4	2066	hgsc.bcm.edu	37	chr2	212251586	212251586	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	atcagttcataccttgtttgGgtttgtctcgcataggagtc	7	16	10	8	1	3	0	2	0	1	0	5	1	3	1	1	2	1	4	1	2	2	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005235	exon27	c.C3473A	p.P1158H	TGTTTGGGTTTGT	.	94	4	72	0	.	.	T	212251586	G	T	212251586	3	4	11	1	0	0	0	0	1	0	0	0	5237	1232	43	3	461	3	ERBB4	2	212251586	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	3138473	212251586	30947787	24	1450											
PRR21	643905	hgsc.bcm.edu	37	chr2	240981683	240981683	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggccgtgggtgaagaggcAtggacgaagggccgtgggtg	8	5	22	6	3	0	2	0	1	0	1	0	4	0	3	2	6	0	1	2	6	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PRR21,NS,carcinoma,0,2	PRR21	NM_001080835	exon1	c.T717C	p.H239H	AGAGGCATGGACG	.	22	5	7	0	.	0	G	240981683	A	G	240981683	2	3	11	1	0	0	0	0	0	0	0	1	12644	214	8	4		4	PRR21	2	240981683	Silent	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	28730097	240981683	2217690	25	1451											
TOP2B	7155	hgsc.bcm.edu	37	chr3	25675377	25675377	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aagctgatttgctggaatccTttttcactcaatgtgagaca	11	14	8	8	0	2	2	2	2	0	1	3	4	3	3	1	1	2	2	1	1	3	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TOP2B,right_upper_lobe,carcinoma,0,1	TOP2B	NM_001068	exon8	c.A966G	p.K322K	GAATCCTTTTTCA	.	49	2	63	0	.	0	C	25675377	T	C	25675377	2	2	11	1	0	0	0	0	0	0	0	1	16427	1606	56	4		4	TOP2B	3	25675377	Silent	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09		25675377	172347053	26	1452											
PLXNB1	5364	bcgsc.ca	37	chr3	48461494	48461494	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccatggcccccaggggCtgagcagggaaggactagcc	8	4	15	14	0	0	1	0	1	0	0	0	3	0	3	4	5	3	2	4	5	2	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	PLXNB1	NM_001130082	exon11	c.G2201T	p.S734I	CAGGGGCTGAGCA	.	43	4	42	0	.	150	A	48461494	A	A	48461494	3	1	11	1	0	0	0	0	1	0	0	0	12171	797	28	3	4318	3	PLXNB1	3	48461494	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	22786117	48461494	149560936	27	1453											
WNT5A	7474	hgsc.bcm.edu	37	chr3	55504231	55504231	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgcacggtcttgaactggtcGtagccacggccgcagcacat	8	8	12	13	4	1	1	0	1	1	0	2	1	1	1	2	3	4	4	2	3	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	WNT5A,NS,carcinoma,0,1	WNT5A	NM_003392	exon5	c.C1032A	p.Y344X	CTGGTCGTAGCCA	.	45	2	52	1	.	0	T	55504231	G	T	55504231	4	4	11	1	0	0	0	0	0	1	0	0	17451	1140	40	2	114	2	WNT5A	3	55504231	Nonsense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	7042737	55504231	142518199	28	1454											
BBX	56987	hgsc.bcm.edu	37	chr3	107435575	107435575	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttattttgcaaacgccatcGctctcttgtacgtcaggaac	9	14	7	11	3	2	0	1	0	1	0	4	1	2	1	1	1	4	3	1	1	4	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001142568	exon5	c.G284T	p.R95L	GCCATCGCTCTCT	.	83	4	54	0	.	.	T	107435575	G	T	107435575	3	4	11	1	0	0	0	0	1	0	0	0	1341	1087	38	2	290	2	BBX	3	107435575	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	51931344	107435575	90586855	29	1455											
C3orf52	79669	hgsc.bcm.edu	37	chr3	111828389	111828389	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatttgcttctgtttgtttaGctcacagatgtgtacagtac	9	17	8	7	0	2	1	1	0	1	1	2	1	2	1	0	0	4	6	0	0	4	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024616	exon4	c.397-1G>A	.	TGTTTAGCTCACA	.	119	5	41	0	.	.	A	111828389	G	A	111828389	5	1	11	1	0	0	0	0	0	0	1	0	2246	985	34	3	410	3	C3orf52	3	111828389	Splice_Site	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	4392814	111828389	86194041	30	1456											
PIK3CB	5291	hgsc.bcm.edu	37	chr3	138407796	138407796	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caccaaattgtactgagacaGcaggaatgtgcacttctgac	13	9	9	10	0	1	2	0	2	1	1	1	4	1	3	1	1	3	3	1	1	3	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006219	exon14	c.C2057T	p.A686V	GAGACAGCAGGAA	.	55	4	43	0	.	.	A	138407796	G	A	138407796	3	1	11	1	0	0	0	0	1	0	0	0	11962	971	34	3	1189	3	PIK3CB	3	138407796	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	26579407	138407796	59614634	31	1457											
MED12L	116931	hgsc.bcm.edu;bcgsc.ca	37	chr3	150876586	150876586	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgctaccactaatgctgcaGgtatagtacatgtccccttg	9	13	8	11	0	0	0	0	0	0	0	1	0	1	0	3	1	5	5	3	1	5	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_053002	exon6	c.G837T	p.Q279H	GCTGCAGGTATAG	.	117	5	41	0	.	.	T	150876586	G	T	150876586	3	4	11	1	0	0	0	0	1	0	0	0	9479	1014	35	3	859	3	MED12L	3	150876586	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	12468790	150876586	47145844	32	1458											
MUC4	4585	hgsc.bcm.edu	37	chr3	195507064	195507064	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tggatgctgaggaagtgtcgGtgacaggaagaggggtggtg	9	8	21	3	1	0	3	0	2	0	1	1	6	0	6	0	7	1	1	0	7	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C11387G	p.T3796S	GTGTCGGTGACAG	.	255	10	95	1	.	0	C	195507064	G	C	195507064	3	2	11	1	0	0	0	0	1	0	0	0	10026	1261	44	5		5	MUC4	3	195507064	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	44630478	195507064	2515366	33	1459											
MUC4	4585	hgsc.bcm.edu	37	chr3	195513782	195513782	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgtggatactgaggaagcgtCggtgacaggaagaggggtgg	10	7	20	4	2	0	3	0	2	0	1	1	6	0	6	0	7	2	0	0	7	3	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_018406	exon2	c.G4669A	p.D1557N	AAGCGTCGGTGAC	.	242	16	66	0	.	.	T	195513782	C	T	195513782	3	4	11	1	0	0	0	0	1	0	0	0	10026	884	31	1		1	MUC4	3	195513782	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	6718	195513782	2508648	34	1460											
RBM47	54502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	40434693	40434693	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggtggtggcgtcgacacaGtgggaatgacagcggctgcg	9	6	18	8	4	0	1	0	1	0	0	1	3	0	2	0	5	2	1	0	5	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001098634	exon6	c.C1517A	p.T506N	GACACAGTGGGAA	.	40	4	39	0	.	.	T	40434693	G	T	40434693	3	4	11	1	0	0	0	0	1	0	0	0	13193	1029	36	3	272	3	RBM47	4	40434693	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		40434693	150719583	35	1461											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	68777188	68777188	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagataccacgtatctttcaGatcccttgtgactaaaggtc	11	12	8	10	1	2	3	1	1	1	2	4	4	3	3	2	1	1	1	2	1	4	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_182606	exon10	c.C1138A	p.L380M	CTTTCAGATCCCT	.	52	5	41	0	.	.	T	68777188	G	T	68777188	3	4	11	1	0	0	0	0	1	0	0	0	16299	933	33	3	131	3	TMPRSS11A	4	68777188	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	28342495	68777188	122377088	36	1462											
DSPP	1834	ucsc.edu;bcgsc.ca	37	chr4	88537327	88537327	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcagcgacagcagcgacagCagcgatagcagtgacagcag	14	2	14	11	3	0	1	0	1	0	0	0	4	0	1	0	0	8	5	0	0	1	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DSPP,colon,carcinoma,+1,1	DSPP	NM_014208	exon5	c.C3513T	p.S1171S	CGACAGCAGCGAT	.	34	4	42	0	.	174	T	88537327	C	T	88537327	2	4	11	1	0	0	0	0	0	0	0	1	4808	709	25	3		3	DSPP	4	88537327	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	19760139	88537327	102616949	37	1463											
SEC24B	10427	bcgsc.ca	37	chr4	110453888	110453888	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gagaaggtgctttccttatgGactgtggctctgtaagcacc	8	12	12	9	0	1	1	0	0	1	1	2	3	2	2	2	3	2	4	2	3	3	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	SEC24B	NM_006323	exon21	c.G3484T	p.D1162Y	CTTATGGACTGTG	.	24	3	38	0	.	186	T	110453888	T	T	110453888	3	4	11	1	0	0	0	0	1	0	0	0	14049	1174	41	3	3566	3	SEC24B	4	110453888	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	21916561	110453888	80700388	38	1464											
NDST4	64579	hgsc.bcm.edu	37	chr4	115858480	115858480	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgtgctcaccatgatGctattgtgaatgaagccctt	8	14	8	11	0	2	3	1	3	1	0	3	3	2	3	2	0	3	2	2	0	3	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022569	exon5	c.C1401A	p.S467R	CATGATGCTATTG	.	58	3	49	0	.	.	T	115858480	G	T	115858480	3	4	11	1	0	0	0	0	1	0	0	0	10305	1310	46	3	1257	3	NDST4	4	115858480	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	5404592	115858480	75295796	39	1465											
CLGN	1047	hgsc.bcm.edu	37	chr4	141321605	141321605	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcttcgaaaactccagttttGggatgtttatgtctgaagat	10	16	9	6	1	2	2	0	1	2	1	4	4	3	3	1	1	1	2	1	1	4	5	rs138156952		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CLGN,hand,malignant_melanoma,0,1	CLGN	NM_001130675	exon8	c.C600A	p.P200P	AGTTTTGGGATGT	.	45	2	31	0	.	0	T	141321605	G	T	141321605	2	4	11	1	0	0	0	0	0	0	0	1	3547	1335	47	3		3	CLGN	4	141321605	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	25463125	141321605	49832671	40	1466											
TIGD4	201798	hgsc.bcm.edu	37	chr4	153691681	153691681	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattttggtaccagacagtcGaagggtctactggtacacct	10	11	10	10	1	1	1	0	0	1	1	2	2	1	1	2	3	3	2	2	3	4	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TIGD4,colon,carcinoma,+1,3	TIGD4	NM_145720	exon2	c.C476A	p.S159X	ACAGTCGAAGGGT	.	46	2	11	0	.	+1	T	153691681	G	T	153691681	4	4	11	1	0	0	0	0	0	1	0	0	15958	1059	37	2	1066	2	TIGD4	4	153691681	Nonsense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	12370076	153691681	37462595	41	1467											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	187542176	187542176	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catactcagcaaataaacgtGgggttcccatgtcatgcact	12	10	8	11	1	2	0	2	0	0	0	3	0	3	0	1	2	4	3	1	2	4	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005245	exon10	c.C5564T	p.P1855L	AAACGTGGGGTTC	.	20	15	12	0	.	.	A	187542176	G	A	187542176	3	1	11	1	0	0	0	0	1	0	0	0	5722	1348	47	3	8274	3	FAT1	4	187542176	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	33850495	187542176	3612100	42	1468											
ZDHHC11	79844	bcgsc.ca	37	chr5	825293	825293	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	acttacccgtgccgtcgaatCcccatcctggtttactgaag	8	11	8	14	3	0	1	0	1	0	0	3	2	2	1	5	1	3	1	5	1	4	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ZDHHC11	NM_024786	exon8	c.G1009A	p.D337N	TCGAATCCCCATC	.	34	4	33	0	.	97	T	825293	T	T	825293	3	4	11	1	0	0	0	0	1	0	0	0	17659	855	30	3	249	3	ZDHHC11	5	825293	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		825293	180089967	43	1469											
NSUN2	54888	hgsc.bcm.edu	37	chr5	6622195	6622195	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtctttgagccaggtgCtgcacacatatctaagatct	9	13	10	9	0	3	2	0	1	3	1	3	2	3	2	1	2	3	2	1	2	2	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_017755	exon6	c.G556A	p.A186T	CAGGTGCTGCACA	.	81	4	43	0	.	.	T	6622195	C	T	6622195	3	4	11	1	0	0	0	0	1	0	0	0	10726	797	28	3	1803	3	NSUN2	5	6622195	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	5796902	6622195	174293065	44	1470											
MARCH6	10299	hgsc.bcm.edu;bcgsc.ca	37	chr5	10411446	10411446	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgatgtaatttttgcacaggGatcttcattcttatttattg	9	20	7	5	0	3	1	1	1	2	0	3	2	3	2	0	1	1	2	0	1	3	9	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005885	exon19	c.G1693T	p.D565Y	CACAGGGATCTTC	.	86	5	42	0	.	.	T	10411446	G	T	10411446	3	4	11	1	0	0	0	0	1	0	0	0	9355	1188	41	3	1767	3	MARCH6	5	10411446	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	3789251	10411446	170503814	45	1471											
SRFBP1	153443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	121362644	121362644	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttctcttcctagattttccAcagaatgagcctcagatcaa	11	14	5	11	0	3	4	2	1	1	3	6	4	5	4	3	0	1	0	3	0	3	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_152546	exon8	c.A1113T	p.P371P	TTTTCCACAGAAT	.	61	29	34	0	.	.	T	121362644	A	T	121362644	2	4	11	1	0	0	0	0	0	0	0	1	15200	146	6	5		5	SRFBP1	5	121362644	Silent	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	110951198	121362644	59552616	46	1472											
MGAT1	4245	hgsc.bcm.edu;bcgsc.ca	37	chr5	180219933	180219933	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggccacaaagaggatagcGccccacagcacaagccctgc	13	2	10	16	1	0	1	0	0	0	1	0	2	0	2	4	2	4	1	4	2	3	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001114617	exon3	c.C39A	p.G13G	GATAGCGCCCCAC	.	51	4	35	0	.	.	T	180219933	G	T	180219933	2	4	11	1	0	0	0	0	0	0	0	1	9592	1074	38	2		2	MGAT1	5	180219933	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	58857289	180219933	695327	47	1473											
RREB1	6239	broad.mit.edu;bcgsc.ca	37	chr6	7189542	7189542	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gccagtcatttaccaccaatGggaacatgcacaggtgggtg	11	8	12	10	0	1	0	1	0	0	0	1	1	1	1	3	3	3	1	3	3	3	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	RREB1	NM_001003700	exon6	c.G412T	p.G138W	ACCAATGGGAACA	.	14	7	19	0	.	242	T	7189542	G	T	7189542	3	4	11	1	0	0	0	0	1	0	0	0	13731	1348	47	3	422	3	RREB1	6	7189542	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		7189542	163925525	48	1474											
HLA-B	3106	hgsc.bcm.edu	37	chr6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctacacatcacaGcagcgaccacagctccgatg	10	8	6	17	2	2	0	1	0	1	0	5	2	5	0	4	0	4	2	4	0	1	2	rs74189305	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	54	3	46	2	.	-1	A	31322910	G	A	31322910	3	1	11	1	0	0	0	0	1	0	0	0	7237	971	34	3	114	3	HLA-B	6	31322910	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	24133368	31322910	139792157	49	1475											
CYP21A2	0	broad.mit.edu	37	chr6	31975463	31975463	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccagattcagcagcgactgTaggaggagctagaccacgaa	13	5	12	11	2	1	2	1	0	0	2	1	6	1	4	2	2	3	3	2	2	3	3	rs370433041		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CYP21A2	.	.	.	.	CGACTGTAGGAGG	.	59	4	59	0	.	42	C	31975463	T	C	31975463	1	2	11	0	1	0	0	0	0	0	0	0	4176	1651	57	4		4	CYP21A2	6	31975463	RNA	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	652553	31975463	139139604	50	1476											
UHRF1BP1	54887	hgsc.bcm.edu	37	chr6	34803196	34803196	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcactgagtgaagccatggaGaagtcagcccatcaaagaaa	16	6	10	9	0	3	4	3	2	0	2	3	5	3	4	2	1	2	0	2	1	4	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_017754	exon7	c.G795T	p.E265D	CATGGAGAAGTCA	.	45	4	24	0	.	.	T	34803196	G	T	34803196	3	4	11	1	0	0	0	0	1	0	0	0	17028	933	33	3	821	3	UHRF1BP1	6	34803196	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	2827733	34803196	136311871	51	1477											
C6orf203	51250	hgsc.bcm.edu	37	chr6	107361230	107361230	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagactcaaaagtaatataaGgtctacaaaatctactaaaa	22	9	4	6	0	3	1	1	0	2	1	3	1	3	1	0	1	2	1	0	1	12	6	rs373305216	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	C6orf203,caecum,carcinoma,0,1	C6orf203	NM_001142470	exon3	c.G281T	p.R94M	ATATAAGGTCTAC	.	35	2	48	0	.	0	T	107361230	G	T	107361230	3	4	11	1	0	0	0	0	1	0	0	0	2366	1000	35	3	287	3	C6orf203	6	107361230	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	72558034	107361230	63753837	52	1478											
PKD1L1	168507	hgsc.bcm.edu	37	chr7	47894505	47894505	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tagcaacatgacgggaaatgCccttgtaacaggtttggaaa	14	9	11	7	1	0	1	0	1	0	0	0	3	0	3	1	3	4	3	1	3	5	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_138295	exon30	c.G4834A	p.A1612T	GAAATGCCCTTGT	.	92	4	31	0	.	.	T	47894505	C	T	47894505	3	4	11	1	0	0	0	0	1	0	0	0	12012	739	26	3	3827	3	PKD1L1	7	47894505	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		47894505	111244158	53	1479											
CNTNAP2	26047	hgsc.bcm.edu	37	chr7	147964169	147964169	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	taccatctgccaagttcatcCgacaccctcttcaattctcc	9	12	3	17	1	5	0	2	0	3	0	7	1	6	0	5	0	2	1	5	0	3	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_014141	exon21	c.C3426T	p.S1142S	TTCATCCGACACC	.	69	4	38	0	.	.	T	147964169	C	T	147964169	2	4	11	1	0	0	0	0	0	0	0	1	3670	639	23	1		1	CNTNAP2	7	147964169	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	100069664	147964169	11174494	54	1480											
GALNT11	63917	hgsc.bcm.edu	37	chr7	151818669	151818669	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caggtgtcggttggacagtgCctgagagcagtggatcccct	7	9	15	10	1	0	1	0	1	0	1	2	4	1	3	3	4	2	2	3	4	0	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022087	exon12	c.C1734T	p.C578C	ACAGTGCCTGAGA	.	64	5	20	0	.	.	T	151818669	C	T	151818669	2	4	11	1	0	0	0	0	0	0	0	1	6249	747	26	3		3	GALNT11	7	151818669	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	3854500	151818669	7319994	55	1481											
DDHD2	23259	hgsc.bcm.edu	37	chr8	38117622	38117622	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacccagggtatcttccttGatcagcctttacagtaaaaa	14	11	6	10	0	2	1	1	1	1	0	3	1	3	1	3	1	3	2	3	1	6	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DDHD2,colon,carcinoma,0,2	DDHD2	NM_001164232	exon17	c.G2119T	p.D707Y	TTCCTTGATCAGC	.	49	2	31	0	.	0	T	38117622	G	T	38117622	3	4	11	1	0	0	0	0	1	0	0	0	4350	1290	45	3	2243	3	DDHD2	8	38117622	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		38117622	108246400	56	1482											
PXDNL	137902	broad.mit.edu;ucsc.edu	37	chr8	52321348	52321348	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggctctcctgctcctgtcGcgcgcactcggtgggtgggc	1	9	17	14	4	1	0	0	0	1	0	5	0	2	0	2	5	1	3	2	5	0	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PXDNL_ENST00000356297,NS,carcinoma,0,6	PXDNL	NM_144651	exon17	c.C2836T	p.R946X	CCTGTCGCGCGCA	.	18	4	10	0	.	414	A	52321348	G	A	52321348	4	1	11	1	0	0	0	0	0	1	0	0	12900	1095	38	1	1583	1	PXDNL	8	52321348	Nonsense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	14203726	52321348	94042674	57	1483											
MTSS1	9788	hgsc.bcm.edu	37	chr8	125568538	125568538	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcagctgctgcaggtgggcCgctggcggtagtgggtcctc	3	9	17	12	2	1	0	1	0	0	0	3	0	2	0	2	5	3	5	2	5	1	1	rs371399134		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MTSS1,lower_third,carcinoma,0,1	MTSS1	NM_014751	exon12	c.G1339A	p.G447S	GTGGGCCGCTGGC	.	37	3	32	0	.	0	T	125568538	C	T	125568538	3	4	11	1	0	0	0	0	1	0	0	0	10010	652	23	1	940	1	MTSS1	8	125568538	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	73247190	125568538	20795484	58	1484											
TG	7038	hgsc.bcm.edu;bcgsc.ca	37	chr8	133885348	133885348	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcgtcgtcttctccacGgggtgggagataagtcacca	10	9	12	10	3	3	1	1	0	2	1	6	3	3	1	2	3	0	0	2	3	2	2	rs370188499	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003235	exon5	c.G520T	p.G174W	CTCCACGGGGTGG	.	46	4	29	0	.	.	T	133885348	G	T	133885348	3	4	11	1	0	0	0	0	1	0	0	0	15873	1116	39	2	538	2	TG	8	133885348	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	8316810	133885348	12478674	59	1485											
TSNARE1	203062	hgsc.bcm.edu	37	chr8	143436077	143436077	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctccacgggcgatggatccGtatgacatcttcttacagat	9	11	9	12	3	2	2	0	1	2	1	4	4	4	3	3	2	1	1	3	2	2	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_145003	exon2	c.C9A	p.Y3X	GGATCCGTATGAC	.	61	4	47	0	.	.	T	143436077	G	T	143436077	4	4	11	1	0	0	0	0	0	1	0	0	16691	1140	40	2	1580	2	TSNARE1	8	143436077	Nonsense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	9550729	143436077	2927945	60	1486											
KDM4C	23081	broad.mit.edu	37	chr9	7170012	7170012	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taattctaaaaaaagccaatGcaacattttccttagtggaa	17	12	5	7	0	1	0	0	0	1	0	2	1	2	1	2	1	3	1	2	1	9	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	KDM4C	NM_001146694	exon21	c.G3116T	p.C1039F	GCCAATGCAACAT	.	104	4	58	0	.	186	T	7170012	G	T	7170012	3	4	11	1	0	0	0	0	1	0	0	0	8174	1319	46	3	3286	3	KDM4C	9	7170012	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		7170012	134043419	61	1487											
TAF1L	138474	hgsc.bcm.edu	37	chr9	32631851	32631851	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcttgaatcctccgccGttctttccgcatctcttccc	3	16	5	17	3	3	1	0	1	3	0	8	1	7	1	5	0	1	3	5	0	1	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TAF1L,NS,carcinoma,+2,2	TAF1L	NM_153809	exon1	c.C3727T	p.R1243W	TCCGCCGTTCTTT	.	79	3	37	0	.	+2	A	32631851	G	A	32631851	3	1	11	1	0	0	0	0	1	0	0	0	15580	1144	40	1	1757	1	TAF1L	9	32631851	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	25461839	32631851	108581580	62	1488											
MUSK	4593	hgsc.bcm.edu	37	chr9	113449410	113449410	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagactctttgacaccCggtacagcatccgggagaat	10	8	10	13	2	1	3	0	1	1	2	2	4	2	3	3	2	3	3	3	2	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUSK,NS,carcinoma,0,1	MUSK	NM_001166281	exon3	c.C220A	p.R74R	GACACCCGGTACA	.	46	2	47	0	.	0	A	113449410	C	A	113449410	2	1	11	1	0	0	0	0	0	0	0	1	10037	643	23	2		2	MUSK	9	113449410	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	80817559	113449410	27764021	63	1489											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117105995	117105995	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccattccttacccgcatcCtgggtcctaatgggccggca	6	10	10	15	2	0	0	0	0	0	0	3	0	3	0	6	3	2	2	6	3	2	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_030767	exon19	c.G3750A	p.Q1250Q	CGCATCCTGGGTC	.	50	17	17	0	.	.	T	117105995	C	T	117105995	2	4	11	1	0	0	0	0	0	0	0	1	460	680	24	3		3	AKNA	9	117105995	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	3656585	117105995	24107436	64	1490											
OR1B1	347169	hgsc.bcm.edu	37	chr9	125391702	125391702	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattccccagtatggtggtcAggtaaatagccaggaacagg	12	8	12	9	0	1	0	1	0	0	0	2	1	2	1	3	5	2	2	3	5	5	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	OR1B1,NS,lymphoid_neoplasm,0,1	OR1B1	NM_001004450	exon1	c.T113G	p.L38R	GTGGTCAGGTAAA	.	41	2	24	0	.	0	C	125391702	A	C	125391702	3	2	11	1	0	0	0	0	1	0	0	0	10999	188	7	4	846	4	OR1B1	9	125391702	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	8285707	125391702	15821729	65	1491											
PDCL	5082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	125588973	125588973	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggctggggcacatctgcctcGgtccttgtcctcgtggtcac	3	11	13	14	2	2	0	1	0	1	0	6	0	4	0	3	5	1	2	3	5	0	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PDCL,NS,carcinoma,0,1	PDCL	NM_005388	exon2	c.C94T	p.R32X	TGCCTCGGTCCTT	.	57	19	29	0	.	0	A	125588973	G	A	125588973	4	1	11	1	0	0	0	0	0	1	0	0	11673	1124	39	1	823	1	PDCL	9	125588973	Nonsense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	197271	125588973	15624458	66	1492											
LAMC3	10319	hgsc.bcm.edu	37	chr9	133942411	133942411	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctggggctctttgggcacccCcagccctgccaccagtgcca	5	7	11	18	0	1	0	0	0	1	0	1	0	1	0	6	3	3	2	6	3	0	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	LAMC3,NS,carcinoma,0,1	LAMC3	NM_006059	exon14	c.C2412A	p.P804P	GCACCCCCAGCCC	.	47	3	39	0	.	0	A	133942411	C	A	133942411	2	1	11	1	0	0	0	0	0	0	0	1	8655	610	22	3		3	LAMC3	9	133942411	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	8353438	133942411	7271020	67	1493											
UBAC1	10422	hgsc.bcm.edu	37	chr9	138836946	138836946	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcagctcatctctggcctcCtcatcggtggcgctggctcc	3	11	11	16	2	4	0	3	0	1	0	8	0	6	0	3	4	1	3	3	4	0	0	rs200169387		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	UBAC1,caecum,adenoma,0,1	UBAC1	NM_016172	exon7	c.G804T	p.E268D	GGCCTCCTCATCG	.	31	4	14	0	.	0	A	138836946	C	A	138836946	3	1	11	1	0	0	0	0	1	0	0	0	16895	680	24	3	429	3	UBAC1	9	138836946	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	4894535	138836946	2376485	68	1494											
PRPF18	8559	hgsc.bcm.edu	37	chr10	13629126	13629126	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agatccttcggaagcggcagCtggtggaggacaggaacctg	10	6	16	9	2	0	1	0	0	0	1	2	5	1	5	2	6	3	2	2	6	2	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003675	exon1	c.C40T	p.L14L	CGGCAGCTGGTGG	.	95	3	66	0	.	.	T	13629126	C	T	13629126	2	4	11	1	0	0	0	0	0	0	0	1	12615	796	28	3		3	PRPF18	10	13629126	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		13629126	121905621	69	1495											
FGFR2	2263	hgsc.bcm.edu	37	chr10	123278298	123278299	+	In_Frame_Ins	INS	-	-	GAA																															gcatccgcctcggtcacattINSgaacagagccagcacttctg																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022970	exon8	c.985_986insTTC	p.N329delinsFN	TCACATTGAACAG	.	60	44	28	0	.	.	GAA	123278299	-	GAA	123278298	7	5	11	1	0	1	1	0	0	0	0	0	5899	1812	63	0	1780	0	FGFR2	10	123278298	In_Frame_Ins	INS	-	TCGA-W5-AA2O-01A-11D-A417-09	109649172	123278298	12256449	70	1496											
MUC2	4583	bcgsc.ca	37	chr11	1092843	1092843	+	Silent	SNP	C	G	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaaccccaacacccaccggCacacagaccccaacaacgac	15	0	4	22	2	0	1	0	0	0	1	0	2	0	1	7	1	4	1	7	1	4	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC2_ENST00000441003,trunk,malignant_melanoma,+1,2	MUC2	NM_002457	exon30	c.C4662G	p.G1554G	CACCGGCACACAG	.	375	12	238	1	.	614	G	1092843	G	G	1092843	2	3	11	1	0	0	0	0	0	0	0	1	10023	697	25	5		5	MUC2	11	1092843	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		1092843	133913673	71	1497											
MUC2	4583	bcgsc.ca	37	chr11	1092890	1092890	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caccaccaccaccacggtgaCcccaaccccaacacccaccg	12	1	4	24	2	0	1	0	1	0	0	0	1	0	1	10	1	2	0	10	1	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC2_ENST00000441003,NS,carcinoma,-1,2	MUC2	NM_002457	exon30	c.C4709T	p.T1570I	CGGTGACCCCAAC	.	589	17	405	2	.	614	T	1092890	T	T	1092890	3	4	11	1	0	0	0	0	1	0	0	0	10023	507	18	3	4827	3	MUC2	11	1092890	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	47	1092890	133913626	72	1498											
EIF4G2	1982	hgsc.bcm.edu	37	chr11	10821765	10821765	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aatgggtgccactttctagtGgttgagctagttctgaaatg	9	14	12	6	0	2	2	0	2	2	0	2	2	2	2	1	2	2	3	1	2	4	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001172705	exon18	c.C1991A	p.P664Q	TCTAGTGGTTGAG	.	71	4	30	0	.	.	T	10821765	G	T	10821765	3	4	11	1	0	0	0	0	1	0	0	0	5065	1348	47	3	752	3	EIF4G2	11	10821765	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	9728875	10821765	124184751	73	1499											
MRGPRX1	259249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18955600	18955600	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	caaaataagacttccctgtcCacgtggatccataaaaatag	16	9	6	10	1	0	1	0	0	0	1	3	2	3	2	3	1	0	0	3	1	7	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_147199	exon1	c.G732A	p.V244V	CCTGTCCACGTGG	.	92	27	55	0	.	.	T	18955600	C	T	18955600	2	4	11	1	0	0	0	0	0	0	0	1	9815	581	21	3		3	MRGPRX1	11	18955600	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	8133835	18955600	116050916	74	1500											
C2CD3	26005	hgsc.bcm.edu;bcgsc.ca	37	chr11	73805030	73805030	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgtggttgcagttctgaaggGcttcagagtaattcctttgg	7	15	13	6	0	2	2	1	1	1	1	3	2	3	2	1	3	1	5	1	3	2	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_015531	exon18	c.C3175A	p.P1059T	TGAAGGGCTTCAG	.	54	5	45	0	.	.	T	73805030	G	T	73805030	3	4	11	1	0	0	0	0	1	0	0	0	2168	1203	42	3	2772	3	C2CD3	11	73805030	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	54849430	73805030	61201486	75	1501											
ME3	10873	bcgsc.ca	37	chr11	86157510	86157510	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactcttaaaaggacttccaCtggcaaaaatccctcggccc	12	8	6	15	1	1	0	0	0	1	0	4	1	3	1	3	3	0	1	3	3	4	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ME3	NM_006680	exon13	c.G1400T	p.S467I	CTTCCACTGGCAA	.	18	3	39	0	.	70	A	86157510	A	A	86157510	3	1	11	1	0	0	0	0	1	0	0	0	9469	565	20	3	426	3	ME3	11	86157510	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	12352480	86157510	48849006	76	1502											
FAT3	120114	broad.mit.edu	37	chr11	92532860	92532860	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atcattatcgatggggacccTtttaaacagtttaacattga	13	14	7	7	1	1	1	1	1	0	0	2	3	1	2	1	2	2	1	1	2	4	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	FAT3_ENST00000409404,NS,carcinoma,+1,2	FAT3	NM_001008781	exon9	c.T6681C	p.P2227P	GGACCCTTTTAAA	.	50	4	44	0	.	1822	C	92532860	T	C	92532860	2	2	11	1	0	0	0	0	0	0	0	1	5724	1596	56	4		4	FAT3	11	92532860	Silent	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	6375350	92532860	42473656	77	1503											
ATM	472	hgsc.bcm.edu	37	chr11	108205808	108205808	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatagattgtgtaggttccgAtggcaaggagaggagacagc	13	8	15	5	1	0	3	0	0	0	3	1	6	1	3	1	4	1	3	1	4	4	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	ATM_ENST00000278616,colon,carcinoma,0,2	ATM_ENST00000278616	NM_000051	exon55	c.A8123T	p.D2708V	GTTCCGATGGCAA	.	73	3	53	0	.	0	T	108205808	A	T	108205808	3	4	11	1	0	0	0	0	1	0	0	0	1108	333	12	5	8337	5	ATM	11	108205808	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	15672948	108205808	26800708	78	1504											
RPUSD4	84881	hgsc.bcm.edu;bcgsc.ca	37	chr11	126079517	126079517	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acacctgtggtttccttgtcCagccggtggcacagatgcaa	8	10	11	12	1	0	1	0	0	0	1	2	1	2	1	4	3	2	3	4	3	1	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001144827	exon3	c.G456A	p.L152L	CTTGTCCAGCCGG	.	47	4	40	0	.	.	T	126079517	C	T	126079517	2	4	11	1	0	0	0	0	0	0	0	1	13721	581	21	3		3	RPUSD4	11	126079517	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	17873709	126079517	8926999	79	1505											
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	966367	966367	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaagtagcaattcctgAagtgaaggaaattattgaag	17	10	10	4	0	0	4	0	4	0	0	1	5	1	5	1	1	1	2	1	1	8	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001184985	exon5	c.A1352G	p.E451G	TTCCTGAAGTGAA	.	131	49	100	0	.	.	G	966367	A	G	966367	3	3	11	1	0	0	0	0	1	0	0	0	17437	246	9	4	1370	4	WNK1	12	966367	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09		966367	132885528	80	1506											
ATN1	1822	hgsc.bcm.edu	37	chr12	7043191	7043191	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acacgacagaataaagactcGgtgagttaaaatgagagaca	19	6	10	6	2	0	5	0	2	0	3	1	7	0	5	0	1	0	1	0	1	5	2	rs147637415	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001007026	exon2	c.G27T	p.S9S	AGACTCGGTGAGT	.	69	4	47	0	.	.	T	7043191	G	T	7043191	2	4	11	1	0	0	0	0	0	0	0	1	1110	1130	39	2		2	ATN1	12	7043191	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	6076824	7043191	126808704	81	1507											
SLCO1B3	28234	hgsc.bcm.edu	37	chr12	21033923	21033923	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccttgtctagcaggatGcaaatcctcaagtggtatta	11	12	9	9	0	3	0	2	0	1	0	4	1	4	1	2	2	2	3	2	2	5	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_019844	exon12	c.G1466A	p.C489Y	CAGGATGCAAATC	.	98	5	57	0	.	.	A	21033923	G	A	21033923	3	1	11	1	0	0	0	0	1	0	0	0	14779	1319	46	3	1504	3	SLCO1B3	12	21033923	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	13990732	21033923	112817972	82	1508											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	43770341	43770341	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acttacagtcattggcataaCatttcttttgagcacctggt	10	15	7	9	0	2	1	1	1	1	0	2	1	2	1	1	2	3	2	1	2	2	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_025003	exon33	c.G5111A	p.C1704Y	GCATAACATTTCT	.	68	21	30	0	.	.	T	43770341	C	T	43770341	3	4	11	1	0	0	0	0	1	0	0	0	265	478	17	3	648	3	ADAMTS20	12	43770341	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	22736418	43770341	90081554	83	1509											
MLL2	8085	hgsc.bcm.edu	37	chr12	49426567	49426632	+	In_Frame_Del	DEL	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	-																															tctggtttaaaaggcccatcTgctgctgttgctgctgctgt																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11857_11922del	p.3953_3974del	CCCATCTGCTGCT	.	54	0	24	0	.	.	-	49426632	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	-	49426567	7	5	11	1	0	1	0	1	0	0	0	0	9669	1580	55	0	4756	0	MLL2	12	49426567	In_Frame_Del	DEL	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	TCGA-W5-AA2O-01A-11D-A417-09	5656226	49426567	84425328	84	1510	6	2									
MLL2	8085	hgsc.bcm.edu	37	chr12	49426576	49426578	+	In_Frame_Del	DEL	TGC	TGC	-																															aaaggcccatctgctgctgtTgctgctgctgttgaaactgc																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11911_11913del	p.3971_3971del	TGCTGTTGCTGCT	.	49	10	24	0	.	.	-	49426578	TGC	-	49426576	7	5	11	1	0	1	0	1	0	0	0	0	9669	1812	63	0	4765	0	MLL2	12	49426576	In_Frame_Del	DEL	TGC	TCGA-W5-AA2O-01A-11D-A417-09	9	49426576	84425319	85	1511	6	2									
MLL2	8085	hgsc.bcm.edu	37	chr12	49426590	49426592	+	In_Frame_Del	DEL	AAA	AAA	-																															tgctgttgctgctgctgttgAaactgctgctgttgttgttg																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11897_11899del	p.3966_3967del	CTGTTGAAACTGC	.	43	11	20	0	.	.	-	49426592	AAA	-	49426590	7	5	11	1	0	1	0	1	0	0	0	0	9669	243	9	0	4779	0	MLL2	12	49426590	In_Frame_Del	DEL	AAA	TCGA-W5-AA2O-01A-11D-A417-09	14	49426590	84425305	86	1512											
KCNH3	23416	hgsc.bcm.edu	37	chr12	49935525	49935525	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gaaaccaagaaccgagggggCcccgacagatggaaggagac	15	1	15	10	2	0	3	0	0	0	3	0	8	0	4	4	4	2	0	4	4	4	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	KCNH3,NS,carcinoma,+2,1	KCNH3	NM_012284	exon3	c.C423T	p.G141G	AGGGGGCCCCGAC	.	68	3	40	0	.	+2	T	49935525	C	T	49935525	2	4	11	1	0	0	0	0	0	0	0	1	8077	726	26	3		3	KCNH3	12	49935525	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	508935	49935525	83916370	87	1513											
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53070970	53070970	+	Splice_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgatctgcagctcttcatacTaaagatggtagatagcgttt	11	14	9	7	1	3	3	1	1	2	2	3	3	3	3	0	1	4	4	0	1	5	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006121	exon7	c.1129-2A>C	.	TCATACTAAAGAT	.	52	19	22	0	.	.	G	53070970	T	G	53070970	5	3	11	1	0	0	0	0	0	0	1	0	8490	1536	53	4	823	4	KRT1	12	53070970	Splice_Site	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	3135445	53070970	80780925	88	1514											
OR6C3	254786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	55725675	55725675	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcctccggaacttctCtttcttagaaatctcattta	8	19	3	11	1	4	1	1	0	4	1	8	2	6	2	2	1	1	0	2	1	4	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_054104	exon1	c.C191A	p.S64Y	ACTTCTCTTTCTT	.	81	33	36	0	.	.	A	55725675	C	A	55725675	3	1	11	1	0	0	0	0	1	0	0	0	11239	913	32	3	193	3	OR6C3	12	55725675	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	2654705	55725675	78126220	89	1515											
DGKA	1606	bcgsc.ca	37	chr12	56347156	56347156	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaaaacccttcccatgCaaattgacggagaaccctgg	14	6	7	14	1	0	2	0	1	0	1	1	3	1	2	4	2	3	1	4	2	4	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	DGKA	NM_201554	exon23	c.C2086A	p.Q696K	CCCATGCAAATTG	.	71	4	31	0	.	70	A	56347156	A	A	56347156	3	1	11	1	0	0	0	0	1	0	0	0	4493	711	25	3	2172	3	DGKA	12	56347156	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	621481	56347156	77504739	90	1516											
XRCC6BP1	91419	hgsc.bcm.edu	37	chr12	58340779	58340779	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tccttttcttgccttttagtGctgttaacaaagatagacac	10	16	6	9	0	1	2	0	0	1	2	2	2	2	2	2	0	3	2	2	0	4	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_033276	exon3	c.G235T	p.A79S	TTTAGTGCTGTTA	.	80	4	34	0	.	.	T	58340779	G	T	58340779	3	4	11	1	0	0	0	0	1	0	0	0	17518	1333	46	3	245	3	XRCC6BP1	12	58340779	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	1993623	58340779	75511116	91	1517											
TMED2	10959	hgsc.bcm.edu;bcgsc.ca	37	chr12	124071376	124071376	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atttgctgctcacatggatgGaacatacaaattttgtttta	12	16	7	6	0	1	0	1	0	0	0	1	2	1	2	0	2	4	3	0	2	4	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006815	exon2	c.G263T	p.G88V	TGGATGGAACATA	.	91	4	55	0	.	.	T	124071376	G	T	124071376	3	4	11	1	0	0	0	0	1	0	0	0	16064	1174	41	3	269	3	TMED2	12	124071376	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	65730597	124071376	9780519	92	1518											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	130184567	130184568	+	Missense_Mutation	DNP	TG	TG	CC																															tcatcgatgtcactgtggccTgtccggatcccattgcttct																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TMEM132D,right_lower_lobe,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.C755G	p.T252R	TGGCCTGTCCGGA	.	40	13	30	0	.	0	CC	130184568	TG	CC	130184567	3	2	11	1	0	0	0	0	1	0	0	0	16107	1567	55	4	2575	4	TMEM132D	12	130184567	Missense_Mutation	DNP	TG	TCGA-W5-AA2O-01A-11D-A417-09	6113191	130184567	3667328	93	1519											
EP400	57634	hgsc.bcm.edu	37	chr12	132547144	132547144	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcaacagcaGcagcagcaacagacgacgac	16	0	11	14	2	0	1	0	0	0	1	0	3	0	1	0	0	10	8	0	0	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	EP400,NS,carcinoma,0,1	EP400	NM_015409	exon47	c.G8232A	p.Q2744Q	ACAGCAGCAGCAG	.	55	7	22	1	.	0	A	132547144	G	A	132547144	2	1	11	1	0	0	0	0	0	0	0	1	5177	962	34	3		3	EP400	12	132547144	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	2362577	132547144	1304751	94	1520											
SAP18	10284	broad.mit.edu	37	chr13	21714709	21714709	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctcatgctcgctgcaggggtCggaggtcagggcgagcgtct	5	8	17	11	4	3	0	2	0	1	0	5	2	3	1	0	5	3	3	0	5	0	0	rs368287644		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	SAP18	NM_005870	exon1	c.C18T	p.V6V	AGGGGTCGGAGGT	.	15	4	21	0	.	12	T	21714709	C	T	21714709	2	4	11	1	0	0	0	0	0	0	0	1	13884	871	31	1		1	SAP18	13	21714709	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		21714709	93455169	95	1521											
FRY	10129	hgsc.bcm.edu	37	chr13	32653148	32653148	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcaggctgaacgcaagattcGtatcattatggcagagcccc	11	9	10	11	2	2	3	2	1	0	2	3	3	2	3	2	2	2	4	2	2	4	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_023037	exon2	c.G248T	p.R83L	AGATTCGTATCAT	.	54	4	70	0	.	.	T	32653148	G	T	32653148	3	4	11	1	0	0	0	0	1	0	0	0	6098	1145	40	2	254	2	FRY	13	32653148	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	10938439	32653148	82516730	96	1522											
CSNK1A1L	122011	hgsc.bcm.edu	37	chr13	37678436	37678436	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttgcctgtctgggtttGggcctgctgaccctgcccac	2	13	12	14	0	1	1	0	1	1	0	1	1	1	1	4	2	4	3	4	2	0	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CSNK1A1L,NS,carcinoma,0,1	CSNK1A1L	NM_145203	exon1	c.C958A	p.Q320K	GGGTTTGGGCCTG	.	43	2	30	0	.	0	T	37678436	G	T	37678436	3	4	11	1	0	0	0	0	1	0	0	0	3976	1357	47	3	59	3	CSNK1A1L	13	37678436	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	5025288	37678436	77491442	97	1523											
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	42873939	42873939	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aggattcagactcagaagtaAgtgaattttttgatagtttt	13	16	9	3	0	2	4	2	2	0	2	2	5	2	5	0	1	0	2	0	1	4	8	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_016248	exon8	c.A1057C	p.S353R	GAAGTAAGTGAAT	.	86	49	55	0	.	.	C	42873939	A	C	42873939	3	2	11	1	0	0	0	0	1	0	0	0	444	72	3	4	1079	4	AKAP11	13	42873939	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	5195503	42873939	72295939	98	1524											
DNAJC3	5611	hgsc.bcm.edu	37	chr13	96412357	96412357	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gttttataaaagaaggagaaCctaggaaagctataagtgac	18	9	10	4	0	0	3	0	1	0	2	0	5	0	4	1	2	2	2	1	2	9	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DNAJC3,NS,carcinoma,0,1	DNAJC3	NM_006260	exon6	c.C610A	p.P204T	GGAGAACCTAGGA	.	46	2	55	0	.	0	A	96412357	C	A	96412357	3	1	11	1	0	0	0	0	1	0	0	0	4674	507	18	3	632	3	DNAJC3	13	96412357	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	53538418	96412357	18757521	99	1525											
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggtgcagcgacaaggagcTgccgccgccgccgctctcac	6	4	14	17	6	1	0	1	0	1	0	2	2	1	1	4	2	4	3	4	2	1	0	rs200797826	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	22	0	13	0	.	202	C	53619480	T	C	53619480	3	2	11	1	0	0	0	0	1	0	0	0	4349	1580	55	4	2442	4	DDHD1	14	53619480	Missense_Mutation	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09		53619480	53730060	100	1526											
ZFP106	64397	hgsc.bcm.edu	37	chr15	42740764	42740764	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gctgctctcagaaaggcttcGctttcttgccaagccagggg	7	10	12	12	1	2	1	1	0	2	1	4	1	2	1	2	3	3	4	2	3	2	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	ZFP106,caecum,carcinoma,0,1	ZFP106	NM_022473	exon3	c.C2572A	p.R858R	GGCTTCGCTTTCT	.	59	4	50	0	.	0	T	42740764	G	T	42740764	2	4	11	1	0	0	0	0	0	0	0	1	17695	1095	38	2		2	ZFP106	15	42740764	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		42740764	59790628	101	1527											
CDAN1	146059	broad.mit.edu	37	chr15	43028860	43028860	+	Frame_Shift_Del	DEL	G	G	-																															ccggggtcttggcgggggtcGggggcccctgcgggaggacg																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CDAN1	NM_138477	exon2	c.209delC	p.P70fs	GGGGTCGGGGGCC	.	9	3	6	0	.	70	-	43028860	G	-	43028860	7	5	11	1	0	1	0	1	0	0	0	0	3076	1116	39	0	3582	0	CDAN1	15	43028860	Frame_Shift_Del	DEL	G	TCGA-W5-AA2O-01A-11D-A417-09	288096	43028860	59502532	102	1528											
SQRDL	58472	hgsc.bcm.edu;broad.mit.edu	37	chr15	45954270	45954270	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagaatggatcaaagctagaGtgactgagttgaacccagac	15	8	11	7	0	1	6	1	3	0	3	1	7	1	7	1	1	2	2	1	1	5	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_021199	exon3	c.G352T	p.V118L	GCTAGAGTGACTG	.	98	4	54	0	.	.	T	45954270	G	T	45954270	3	4	11	1	0	0	0	0	1	0	0	0	15185	1029	36	3	358	3	SQRDL	15	45954270	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	2925410	45954270	56577122	103	1529											
MYO9A	4649	hgsc.bcm.edu	37	chr15	72338441	72338441	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagttttctcattcaaatcaGgtaaactacataaatcatca	16	13	4	8	0	5	0	5	0	1	0	6	1	5	0	0	1	2	2	0	1	6	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006901	exon2	c.C464T	p.P155L	AAATCAGGTAAAC	.	95	4	44	0	.	.	A	72338441	G	A	72338441	3	1	11	1	0	0	0	0	1	0	0	0	10132	1000	35	3	7346	3	MYO9A	15	72338441	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	26384171	72338441	30192951	104	1530											
PPL	5493	hgsc.bcm.edu	37	chr16	4935049	4935049	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagctgctcctcggcaccccGgtactttcgctcctgctcca	4	10	9	18	3	0	0	0	0	0	0	5	1	3	0	5	2	4	6	5	2	1	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PPL,NS,carcinoma,0,2	PPL	NM_002705	exon22	c.C3607A	p.R1203R	CACCCCGGTACTT	.	18	2	15	0	.	0	T	4935049	G	T	4935049	2	4	11	1	0	0	0	0	0	0	0	1	12383	1115	39	2		2	PPL	16	4935049	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		4935049	85419704	105	1531											
MVD	4597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	88721635	88721635	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtggtgggcgttgaagCggtgcaccaggtggatgatg	6	8	18	9	3	0	2	0	2	0	0	0	3	0	3	3	5	2	2	3	5	1	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_002461	exon7	c.G869A	p.R290H	TTGAAGCGGTGCA	.	42	12	25	0	.	.	T	88721635	C	T	88721635	3	4	11	1	0	0	0	0	1	0	0	0	10042	768	27	1	349	1	MVD	16	88721635	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	83786586	88721635	1633118	106	1532											
TP53	7157	broad.mit.edu;bcgsc.ca	37	chr17	7577554	7577573	+	Frame_Shift_Del	DEL	TGCAGGAACTGTTACACATG	TGCAGGAACTGTTACACATG	-																															cctccggttcatgccgcccaTgcaggaactgttacacatgt																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TP53,NS,carcinoma,0,28	TP53	NM_000546	exon7	c.708_727del	p.236_243del	CGCCCATGCAGGA	.	17	7	28	0	.	33396	-	7577573	TGCAGGAACTGTTACACATG	-	7577554	7	5	11	1	0	1	0	1	0	0	0	0	16442	1464	51	0	563	0	TP53	17	7577554	Frame_Shift_Del	DEL	TGCAGGAACTGTTACACATG	TCGA-W5-AA2O-01A-11D-A417-09		7577554	73617656	107	1533											
TP53	7157	hgsc.bcm.edu	37	chr17	7577579	7577580	+	Frame_Shift_Ins	INS	-	-	T																															aactgttacacatgtagttgINStagtggatggtggtacagtc																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TP53_ENST00000545858,colon,carcinoma,0,21	TP53_ENST00000545858	NM_001126112	exon7	c.702_703insA	p.Y234_N235delinsX	GTAGTTGTAGTGG	.	18	10	33	0	.	0	T	7577580	-	T	7577579	7	5	11	1	0	1	1	0	0	0	0	0	16442	1372	48	0	588	0	TP53	17	7577579	Frame_Shift_Ins	INS	-	TCGA-W5-AA2O-01A-11D-A417-09	25	7577579	73617631	108	1534											
MYH2	4620	bcgsc.ca	37	chr17	10436657	10436657	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caagaaccctctgcacctggCctgggttcgggtaatcagct	8	9	11	13	1	2	1	1	0	1	1	3	1	2	1	3	3	3	4	3	3	3	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	MYH2	NM_017534	exon21	c.G2386A	p.A796T	ACCTGGCCTGGGT	.	57	5	66	0	.	390	T	10436657	T	T	10436657	3	4	11	1	0	0	0	0	1	0	0	0	10083	739	26	3	3519	3	MYH2	17	10436657	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	2859078	10436657	70758553	109	1535											
TRAF4	9618	ucsc.edu	37	chr17	27075650	27075650	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaacaccgccctggtgcTctgcccattcaaagactccg	8	9	8	16	2	2	1	1	0	1	1	3	1	3	1	4	1	3	2	4	1	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	TRAF4	NM_004295	exon6	c.T746C	p.L249P	TGGTGCTCTGCCC	.	41	4	13	0	.	20	C	27075650	T	C	27075650	3	2	11	1	0	0	0	0	1	0	0	0	16504	1551	54	4	768	4	TRAF4	17	27075650	Missense_Mutation	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	16638993	27075650	54119560	110	1536											
SLFN11	91607	hgsc.bcm.edu;bcgsc.ca	37	chr17	33690820	33690820	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aaccagggggcactgatttgCctccatgttgaactcacagc	10	9	10	12	0	1	2	1	2	0	0	2	2	2	2	3	2	4	2	3	2	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_152270	exon2	c.G7A	p.A3T	GATTTGCCTCCAT	.	84	4	35	0	.	.	T	33690820	C	T	33690820	3	4	11	1	0	0	0	0	1	0	0	0	14788	739	26	3	2714	3	SLFN11	17	33690820	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	6615170	33690820	47504390	111	1537											
HOXB2	3212	hgsc.bcm.edu	37	chr17	46622342	46622342	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggatcggaagggaccccccTcctgcaccccccccgattta	8	6	9	18	2	0	0	0	0	0	0	2	4	1	3	8	3	1	1	8	3	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CCCCCCTCCTGCA	.	78	7	41	0	.	.	C	46622342	T	C	46622342	1	2	11	0	1	0	0	0	0	0	0	0	7342	1566	54	4		4	HOXB2	17	46622342	RNA	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	12931522	46622342	34572868	112	1538											
MKS1	54903	bcgsc.ca	37	chr17	56293485	56293485	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatctatcagagtcagtgtaGgtaaagattcgtcggttttt	10	16	10	5	2	3	2	2	0	1	2	5	2	3	2	0	2	0	3	0	2	5	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	MKS1	NM_017777	exon4	c.C381A	p.T127T	AGTGTAGGTAAAG	.	142	5	50	0	.	100	T	56293485	T	T	56293485	2	4	11	1	0	0	0	0	0	0	0	1	9657	987	35	3		3	MKS1	17	56293485	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	9671143	56293485	24901725	113	1539											
LRRC37A3	374819	hgsc.bcm.edu	37	chr17	62856687	62856687	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttctccacagatgcctgggCaccctgttccctcctgatgc	5	11	9	16	0	1	2	0	1	1	1	4	2	3	2	5	1	2	3	5	1	0	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_199340	exon11	c.G3577T	p.A1193S	CCTGGGCACCCTG	.	176	7	64	0	.	.	A	62856687	C	A	62856687	3	1	11	1	0	0	0	0	1	0	0	0	9038	710	25	3	1343	3	LRRC37A3	17	62856687	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	6563202	62856687	18338523	114	1540											
ACOX1	51	hgsc.bcm.edu	37	chr17	73944443	73944443	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatcctgaaaatcaaatgcAtcaaccaaagcaacagcatc	19	6	4	12	0	2	1	2	1	0	0	4	1	3	1	2	0	5	3	2	0	6	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_007292	exon13	c.T1824A	p.D608E	AAATGCATCAACC	.	94	4	40	0	.	.	T	73944443	A	T	73944443	3	4	11	1	0	0	0	0	1	0	0	0	158	214	8	5	166	5	ACOX1	17	73944443	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	11087756	73944443	7250767	115	1541											
ZNF750	79755	hgsc.bcm.edu	37	chr17	80788577	80788577	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgagaagctggcggtttccGcctgggggctgccttggtac	4	10	16	11	2	0	1	0	1	0	1	1	2	1	1	3	5	3	4	3	5	2	3	rs142714888	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024702	exon3	c.C1613A	p.A538E	GTTTCCGCCTGGG	.	82	4	44	0	.	.	T	80788577	G	T	80788577	3	4	11	1	0	0	0	0	1	0	0	0	18182	1087	38	2	562	2	ZNF750	17	80788577	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	6844134	80788577	406633	116	1542											
LAMA3	3909	hgsc.bcm.edu	37	chr18	21513818	21513818	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgtccctgggaggctgCagtttaaacaaaccaccttt	10	11	10	10	0	0	0	0	0	0	0	1	2	1	1	3	2	3	3	3	2	3	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_198129	exon67	c.C8781T	p.C2927C	AGGCTGCAGTTTA	.	90	5	44	0	.	.	T	21513818	C	T	21513818	2	4	11	1	0	0	0	0	0	0	0	1	8646	718	25	3		3	LAMA3	18	21513818	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		21513818	56563430	117	1543											
HDGFRP2	0	hgsc.bcm.edu	37	chr19	4493798	4493798	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcggcgtcctcctcctcctcTtcctcctcctcctccgactc	1	13	4	23	3	1	0	0	0	1	0	12	1	10	0	9	1	0	0	9	1	0	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,1	.	NM_032631	exon7	c.T777C	p.S259S	CTCCTCTTCCTCC	.	59	3	30	0	.	.	C	4493798	T	C	4493798	2	2	11	1	0	0	0	0	0	0	0	1	7061	1596	56	4		4	HDGFRP2	19	4493798	Silent	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09		4493798	54635185	118	1544											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8191217	8191217	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatccgggcaaagccccGggcacaggcagggtctgcaa	9	4	14	14	3	2	0	1	0	1	0	3	0	3	0	3	4	2	4	3	4	2	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_032447	exon20	c.C2569T	p.R857W	AGCCCCGGGCACA	.	110	44	60	0	.	.	A	8191217	G	A	8191217	3	1	11	1	0	0	0	0	1	0	0	0	5737	1115	39	1	6036	1	FBN3	19	8191217	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	3697419	8191217	50937766	119	1545											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9072960	9072960	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccacattggtaactactgtgTttatggaaggatgcgttgtc	9	14	11	7	1	0	0	0	0	0	0	1	2	0	2	1	3	3	3	1	3	4	6	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024690	exon3	c.A14486G	p.N4829S	ACTGTGTTTATGG	.	110	38	20	0	.	.	C	9072960	T	C	9072960	3	2	11	1	0	0	0	0	1	0	0	0	10021	1725	60	4	29365	4	MUC16	19	9072960	Missense_Mutation	SNP	T	TCGA-W5-AA2O-01A-11D-A417-09	881743	9072960	50056023	120	1546											
EMR3	84658	hgsc.bcm.edu	37	chr19	14736408	14736408	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccacttttgatattgtttctGgacctggaacatcaaaggaa	12	13	8	8	0	2	1	1	1	1	0	2	4	2	4	2	3	1	1	2	3	4	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_032571	exon15	c.C1816A	p.Q606K	GTTTCTGGACCTG	.	84	4	33	0	.	.	T	14736408	G	T	14736408	3	4	11	1	0	0	0	0	1	0	0	0	5134	1357	47	3	150	3	EMR3	19	14736408	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	5663448	14736408	44392575	121	1547											
ZNF85	7639	hgsc.bcm.edu	37	chr19	21131993	21131993	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctaaacataagagaattcatAcgggagagaaaccttacaaa	20	7	7	7	1	1	2	1	0	0	2	1	5	1	3	1	1	4	0	1	1	8	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001256171	exon5	c.A763G	p.T255A	ATTCATACGGGAG	.	78	4	51	0	.	.	G	21131993	A	G	21131993	3	3	11	1	0	0	0	0	1	0	0	0	18237	391	14	4	687	4	ZNF85	19	21131993	Missense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09	6395585	21131993	37996990	122	1548											
KRTDAP	388533	hgsc.bcm.edu	37	chr19	35978354	35978354	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tgggcatcaggagttgcgctCctcagtcctttcagctagag	7	11	12	11	1	3	1	3	0	0	1	5	2	5	2	2	2	2	4	2	2	1	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_207392	exon6	c.G276A	p.R92R	TGCGCTCCTCAGT	.	84	4	28	0	.	.	T	35978354	C	T	35978354	2	4	11	1	0	0	0	0	0	0	0	1	8619	854	30	3		3	KRTDAP	19	35978354	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	14846361	35978354	23150629	123	1549											
KLK14	43847	hgsc.bcm.edu;bcgsc.ca	37	chr19	51585890	51585890	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attttaggggctgagggccaGgtcctgtcaaatgcagagaa	11	9	14	7	0	1	2	1	1	0	1	2	3	2	2	2	4	1	2	2	4	3	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022046	exon3	c.C30A	p.T10T	GGGCCAGGTCCTG	.	83	5	56	0	.	.	T	51585890	G	T	51585890	2	4	11	1	0	0	0	0	0	0	0	1	8445	987	35	3		3	KLK14	19	51585890	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	15607536	51585890	7543093	124	1550											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56515295	56515295	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatcttcagaatcgacCacatgctctattccacagtt	14	11	5	11	1	3	2	1	0	2	2	5	3	4	2	2	0	1	2	2	0	4	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_153447	exon2	c.C276T	p.T92T	ATCGACCACATGC	.	91	29	48	0	.	.	T	56515295	C	T	56515295	2	4	11	1	0	0	0	0	0	0	0	1	10527	581	21	3		3	NLRP5	19	56515295	Silent	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	4929405	56515295	2613688	125	1551											
ZNF547	284306	hgsc.bcm.edu	37	chr19	57888521	57888521	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgccatggagctgaggatgaGgaggcacctttagagccagg	10	7	16	8	0	0	3	0	2	0	1	0	6	0	6	3	5	3	2	3	5	1	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_173631	exon4	c.G177T	p.E59D	GGATGAGGAGGCA	.	58	4	31	0	.	.	T	57888521	G	T	57888521	3	4	11	1	0	0	0	0	1	0	0	0	18036	991	35	3	187	3	ZNF547	19	57888521	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	1373226	57888521	1240462	126	1552											
ZNF329	79673	hgsc.bcm.edu	37	chr19	58639391	58639391	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tactgccaggtgagagttctGcttgaaggacttcccacatt	9	12	10	10	0	1	2	0	2	1	1	2	4	2	3	2	2	3	2	2	2	2	5	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024620	exon4	c.C1480A	p.Q494K	AGTTCTGCTTGAA	.	75	4	29	0	.	.	T	58639391	G	T	58639391	3	4	11	1	0	0	0	0	1	0	0	0	17904	1328	46	3	149	3	ZNF329	19	58639391	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	750870	58639391	489592	127	1553											
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278688	278688	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggcccctccaggatgagcCggcggcggcggcggcaggcc	4	2	19	16	6	0	1	0	1	0	0	1	2	1	2	5	8	1	1	5	8	0	0	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,4	.	NM_033089	exon1	c.C461A	p.P154Q	ATGAGCCGGCGGC	.	15	2	10	0	.	20	A	278688	C	A	278688	3	1	11	1	0	0	0	0	1	0	0	0	17647	652	23	2	463	2	ZCCHC3	20	278688	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		278688	62746832	128	1554											
CPXM1	56265	hgsc.bcm.edu	37	chr20	2776024	2776024	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggacagctccacagtgacctCaaagcagttggtgtgtaggt	10	9	13	9	0	1	1	1	1	0	0	2	2	2	2	2	3	2	4	2	3	2	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CPXM1,NS,carcinoma,0,1	CPXM1	NM_019609	exon12	c.G1759T	p.E587X	TGACCTCAAAGCA	.	32	2	17	0	.	0	A	2776024	C	A	2776024	4	1	11	1	0	0	0	0	0	1	0	0	3860	835	29	3	457	3	CPXM1	20	2776024	Nonsense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	2497336	2776024	60249496	129	1555											
CPNE1	8904	hgsc.bcm.edu	37	chr20	34218396	34218396	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tactggggttgaaattcaagGcaaattcatgcgagacctgg	12	10	12	7	1	2	2	2	1	0	1	2	3	2	2	1	4	2	2	1	4	4	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003915	exon13	c.C1082T	p.A361V	TTCAAGGCAAATT	.	98	4	56	0	.	.	A	34218396	G	A	34218396	3	1	11	1	0	0	0	0	1	0	0	0	3834	1203	42	3	562	3	CPNE1	20	34218396	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	31442372	34218396	28807124	130	1556											
DNAJC28	54943	hgsc.bcm.edu	37	chr21	34860754	34860754	+	Nonsense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggtcaggatgggaacaattAaattaaaatcattaattcgc	16	12	8	5	1	2	0	2	0	0	0	3	2	2	2	0	3	1	0	0	3	7	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DNAJC28,NS,carcinoma,0,2	DNAJC28	NM_001040192	exon2	c.T947G	p.L316X	ACAATTAAATTAA	.	91	4	47	0	.	0	C	34860754	A	C	34860754	4	2	11	1	0	0	0	0	0	1	0	0	4673	372	13	4	223	4	DNAJC28	21	34860754	Nonsense_Mutation	SNP	A	TCGA-W5-AA2O-01A-11D-A417-09		34860754	13269141	131	1557											
GART	2618	bcgsc.ca	37	chr21	34889332	34889332	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tttctcagggaggactctggGgatgttctctagtaatcctc	7	14	11	9	0	3	0	1	0	3	0	7	3	4	3	1	4	0	2	1	4	2	4	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	GART	NM_001136005	exon16	c.C2071A	p.P691T	CTCTGGGGATGTT	.	57	4	36	0	.	81	T	34889332	T	T	34889332	3	4	11	1	0	0	0	0	1	0	0	0	6283	1232	43	3	989	3	GART	21	34889332	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	28578	34889332	13240563	132	1558											
PTTG1IP	754	hgsc.bcm.edu	37	chr21	46271541	46271541	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gggttttcttctttaaacagGcctgaaacaaaataaacttg	14	13	7	7	0	2	1	0	1	2	0	2	1	2	1	1	2	3	1	1	2	7	7	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PTTG1IP_ENST00000445724,NS,carcinoma,0,2	PTTG1IP_ENST00000445724	NM_004339	exon6	c.C498T	p.G166G	AAACAGGCCTGAA	.	74	3	48	1	.	0	A	46271541	G	A	46271541	2	1	11	1	0	0	0	0	0	0	0	1	12872	1217	42	3		3	PTTG1IP	21	46271541	Silent	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	11382209	46271541	1858354	133	1559											
TBX1	6899	hgsc.bcm.edu	37	chr22	19752563	19752563	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caaagatagcgagaaatatgCcgaggagaacttcaaaacct	18	6	9	8	2	1	3	1	0	0	3	1	6	1	3	2	1	4	0	2	1	7	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TBX1_ENST00000359500,brain,atypical_teratoid-rhabdoid_tumour,0,3	TBX1_ENST00000359500	NM_080647	exon6	c.C767T	p.A256V	AATATGCCGAGGA	.	52	3	30	0	.	0	T	19752563	C	T	19752563	3	4	11	1	0	0	0	0	1	0	0	0	15710	739	26	3	785	3	TBX1	22	19752563	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09		19752563	31552003	134	1560											
ASPHD2	57168	hgsc.bcm.edu	37	chr22	26830408	26830408	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgcatctctgtgctgagccCtgggactgtgataacggagc	7	10	14	10	1	1	2	0	2	1	0	2	4	1	4	1	2	5	2	1	2	1	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020437	exon2	c.C827A	p.P276H	TGAGCCCTGGGAC	.	78	4	54	0	.	.	A	26830408	C	A	26830408	3	1	11	1	0	0	0	0	1	0	0	0	1054	681	24	3	829	3	ASPHD2	22	26830408	Missense_Mutation	SNP	C	TCGA-W5-AA2O-01A-11D-A417-09	7077845	26830408	24474158	135	1561											
EP300	2033	hgsc.bcm.edu	37	chr22	41547849	41547849	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccagctttcccagccaGctgtaagcattgaaggacag	10	8	10	13	0	0	1	0	1	0	0	1	2	1	2	3	1	5	4	3	1	2	3	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001429	exon15	c.G2830A	p.A944T	CAGCCAGCTGTAA	.	73	5	29	0	.	.	A	41547849	G	A	41547849	3	1	11	1	0	0	0	0	1	0	0	0	5176	971	34	3	2888	3	EP300	22	41547849	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	14717441	41547849	9756717	136	1562											
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41911822	41911822	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccggttggtcctcacccaaaGatgtgatcctgaaggtggca	9	9	12	11	1	1	3	1	2	0	1	3	3	3	3	4	4	0	2	4	4	2	1	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001098	exon6	c.G736A	p.D246N	CCCAAAGATGTGA	.	60	14	39	0	.	.	A	41911822	G	A	41911822	3	1	11	1	0	0	0	0	1	0	0	0	147	942	33	3	758	3	ACO2	22	41911822	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09	363973	41911822	9392744	137	1563											
FAM122C	159091	hgsc.bcm.edu;bcgsc.ca	37	chrX	133938244	133938244	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gatcatggcatatttccctgGaactggaaggactgatcaag	12	10	11	8	0	2	1	2	1	0	0	3	5	3	4	1	4	1	1	1	4	4	2	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001170780	exon3	c.G17T	p.G6V	TCCCTGGAACTGG	.	52	4	38	0	.	.	T	133938244	G	T	133938244	3	4	11	1	0	0	0	0	1	0	0	0	5452	1174	41	3	19	3	FAM122C	23	133938244	Missense_Mutation	SNP	G	TCGA-W5-AA2O-01A-11D-A417-09		133938244	21332316	138	1564											
PLXNA3	55558	broad.mit.edu	37	chrX	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-																															ctgctgctcttccttgccgtGgggggggccctgggcaacag																								novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	PLXNA3	NM_017514	exon2	c.42delG	p.V14fs	TGCCGTGGGGGGG	.	9	3	6	0	.	156	-	153688565	G	-	153688565	7	5	11	1	0	1	0	1	0	0	0	0	12169	1335	47	0	44	0	PLXNA3	23	153688565	Frame_Shift_Del	DEL	G	TCGA-W5-AA2O-01A-11D-A417-09	19750321	153688565	1581995	139	1565											
MEGF6	1953	hgsc.bcm.edu	37	chr1	3440803	3440803	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgttgtgggttcggcattcGtccacatctgagcaggaatg	7	11	13	10	3	1	1	0	1	1	0	4	2	2	2	2	3	1	4	2	3	1	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MEGF6,NS,carcinoma,0,1	MEGF6	NM_001409	exon5	c.C489A	p.D163E	GCATTCGTCCACA	.	13	2	84	0	.	0	T	3440803	G	T	3440803	3	4	12	1	0	0	0	0	1	0	0	0	9512	1136	40	2	4268	2	MEGF6	1	3440803	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		3440803	245809818	1	1566											
DDOST	1650	hgsc.bcm.edu	37	chr1	20979149	20979149	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtgtgtagcctagccGgttgtaatccactttaaact	9	13	10	9	1	0	0	0	0	0	0	1	0	1	0	3	2	3	3	3	2	5	6	rs138561924	alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DDOST,colon,carcinoma,0,1	DDOST	NM_005216	exon10	c.C1186A	p.R396R	CTAGCCGGTTGTA	.	22	2	101	0	.	0	T	20979149	G	T	20979149	2	4	12	1	0	0	0	0	0	0	0	1	4358	1115	39	2		2	DDOST	1	20979149	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	17538346	20979149	228271472	2	1567											
HMGCL	3155	broad.mit.edu	37	chr1	24147070	24147070	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gctttggtaaagtgcccataGatgaggtgctgacctttggt	8	13	13	7	0	0	3	0	2	0	1	0	3	0	3	2	3	2	3	2	3	3	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HMGCL	NM_000191	exon2	c.C74T	p.S25F	CCCATAGATGAGG	.	24	3	95	0	.	22	A	24147070	G	A	24147070	3	1	12	1	0	0	0	0	1	0	0	0	7270	942	33	3	935	3	HMGCL	1	24147070	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	3167921	24147070	225103551	3	1568											
RUNX3	864	hgsc.bcm.edu	37	chr1	25229099	25229099	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctctccgtgagggttggcagCgtggggaaggagcggtcaaa	8	7	18	8	3	2	1	1	1	1	0	3	3	2	3	1	6	2	2	1	6	2	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RUNX3_ENST00000399916,NS,carcinoma,0,2	RUNX3_ENST00000399916	NM_001031680	exon6	c.G804A	p.T268T	TGGCAGCGTGGGG	.	44	2	136	0	.	0	T	25229099	C	T	25229099	2	4	12	1	0	0	0	0	0	0	0	1	13801	755	27	1		1	RUNX3	1	25229099	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	1082029	25229099	224021522	4	1569											
WASF2	10163	bcgsc.ca	37	chr1	27742558	27742558	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaagatcaaagaagtatgaaGggtctgtgtagaatttgagt	16	11	12	2	0	2	5	1	2	1	3	2	5	2	5	0	1	0	2	0	1	7	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	WASF2	NM_006990	exon5	c.C458T	p.P153L	TATGAAGGGTCTG	.	28	3	88	0	.	41	A	27742558	A	A	27742558	3	1	12	1	0	0	0	0	1	0	0	0	17313	1000	35	3	1058	3	WASF2	1	27742558	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2513459	27742558	221508063	5	1570											
SERINC2	347735	hgsc.bcm.edu	37	chr1	31905889	31905889	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacctatgctagacgccacAcagcagcagcagcaggtggc	11	4	11	15	1	0	1	0	0	0	1	0	1	0	1	3	2	5	5	3	2	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.,6	.	NM_001199038	exon10	c.A1116G	p.T372T	CGCCACACAGCAG	.	12	1	48	0	.	44	G	31905889	A	G	31905889	2	3	12	1	0	0	0	0	0	0	0	1	14134	146	6	4		4	SERINC2	1	31905889	Silent	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09	4163331	31905889	217344732	6	1571											
ZMYM1	79830	hgsc.bcm.edu	37	chr1	35579573	35579573	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atggataaaatacatggccaGgcctatgatagcaccactaa	16	8	8	9	0	0	1	0	1	0	0	0	2	0	2	3	3	2	1	3	3	6	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZMYM1,colon,carcinoma,0,1	ZMYM1	NM_024772	exon10	c.G2142T	p.Q714H	TGGCCAGGCCTAT	.	33	2	73	0	.	0	T	35579573	G	T	35579573	3	4	12	1	0	0	0	0	1	0	0	0	17757	991	35	3	2176	3	ZMYM1	1	35579573	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	3673684	35579573	213671048	7	1572											
TIE1	7075	bcgsc.ca	37	chr1	43783044	43783044	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gggccatgatcaagaaggacGggctgaagatgaacgcagcc	13	4	15	9	2	1	5	1	3	0	2	1	6	1	6	2	3	2	2	2	3	4	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TIE1	NM_005424	exon15	c.G2584T	p.G862W	AAGGACGGGCTGA	.	19	3	41	0	.	132	T	43783044	T	T	43783044	3	4	12	1	0	0	0	0	1	0	0	0	15953	1116	39	2	2642	2	TIE1	1	43783044	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	8203471	43783044	205467577	8	1573											
ZSWIM5	57643	ucsc.edu	37	chr1	45500112	45500112	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagggtgggatgtgtcgcctGcagaagctgagttttctaaa	9	11	15	6	1	1	2	0	1	1	1	2	4	1	3	1	2	2	3	1	2	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZSWIM5	NM_020883	exon11	c.C2321A	p.A774E	TCGCCTGCAGAAG	.	35	4	69	0	.	72	T	45500112	G	T	45500112	3	4	12	1	0	0	0	0	1	0	0	0	18284	1319	46	3	1252	3	ZSWIM5	1	45500112	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	1717068	45500112	203750509	9	1574											
ELAVL4	1996	hgsc.bcm.edu	37	chr1	50610818	50610818	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagaattcaggagtctcttcGggagcattggtgaaatagaa	14	10	12	5	1	2	3	1	1	1	2	4	5	2	5	0	3	1	1	0	3	5	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ELAVL4_ENST00000357083,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2	ELAVL4_ENST00000357083	NM_001144775	exon2	c.G250A	p.G84R	CTCTTCGGGAGCA	.	49	2	77	0	.	0	A	50610818	G	A	50610818	3	1	12	1	0	0	0	0	1	0	0	0	5080	1116	39	1	304	1	ELAVL4	1	50610818	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	5110706	50610818	198639803	10	1575											
C1orf173	127254	hgsc.bcm.edu	37	chr1	75038477	75038477	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ttcctctcccccaagaattgCctcttcagaaccgtcctctc	7	12	4	18	1	4	2	1	0	3	2	8	2	6	2	6	0	2	0	6	0	3	3	rs200414564	bycluster;alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	C1orf173,NS,carcinoma,0,1	C1orf173	NM_001002912	exon14	c.G2917A	p.A973T	GAATTGCCTCTTC	.	19	2	40	0	.	0	T	75038477	C	T	75038477	3	4	12	1	0	0	0	0	1	0	0	0	2027	739	26	3	1679	3	C1orf173	1	75038477	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	24427659	75038477	174212144	11	1576											
PSMA5	5686	hgsc.bcm.edu	37	chr1	109944658	109944658	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgtccttgataacctcttCaagttcttcctttgtgaaca	10	16	5	10	0	3	2	1	2	2	0	5	2	5	2	3	0	2	1	3	0	4	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002790	exon9	c.G703T	p.E235X	CCTCTTCAAGTTC	.	59	4	89	0	.	.	A	109944658	C	A	109944658	4	1	12	1	0	0	0	0	0	1	0	0	12719	835	29	3	26	3	PSMA5	1	109944658	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	34906181	109944658	139305963	12	1577											
BCL9	607	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	147096004	147096004	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	atgggtttcccaggagaaggCccccttggccgccccagcaa	8	6	12	15	1	0	1	0	0	0	1	1	2	1	1	6	4	1	2	6	4	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	BCL9	NM_004326	exon10	c.C3525T	p.G1175G	AGAAGGCCCCCTT	.	76	37	54	1	.	150	T	147096004	C	T	147096004	2	4	12	1	0	0	0	0	0	0	0	1	1379	726	26	3		3	BCL9	1	147096004	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	37151346	147096004	102154617	13	1578											
PKLR	5313	bcgsc.ca	37	chr1	155271109	155271109	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctggagccccaatcaggatGgactttgctaagtctctttg	8	12	10	11	0	2	0	1	0	1	0	3	3	2	3	3	3	2	1	3	3	2	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PKLR	NM_000298	exon1	c.C78A	p.S26S	CAGGATGGACTTT	.	72	4	40	0	.	70	T	155271109	T	T	155271109	2	4	12	1	0	0	0	0	0	0	0	1	12024	1335	47	3		3	PKLR	1	155271109	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	8175105	155271109	93979512	14	1579											
NR1I3	9970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161206261	161206261	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	actctcacctgaagaaacccTtgcagccctcacaagtcagc	12	7	6	16	0	3	2	3	1	1	1	4	2	3	2	3	0	4	1	3	0	3	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_005122	exon2	c.A95C	p.K32T	AAACCCTTGCAGC	.	115	11	59	0	.	.	G	161206261	T	G	161206261	3	3	12	1	0	0	0	0	1	0	0	0	10669	1609	56	4	1105	4	NR1I3	1	161206261	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	5935152	161206261	88044360	15	1580											
RABGAP1L	9910	hgsc.bcm.edu	37	chr1	174957825	174957825	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtgacattttcagcaaggaGggtgctttgaaactagcagc	12	10	12	7	0	1	2	1	2	0	0	1	3	1	3	0	2	5	3	0	2	3	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001243765	exon8	c.G810T	p.E270D	CAAGGAGGGTGCT	.	98	4	69	0	.	.	T	174957825	G	T	174957825	3	4	12	1	0	0	0	0	1	0	0	0	13017	1015	35	3		3	RABGAP1L	1	174957825	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	13751564	174957825	74292796	16	1581											
HMCN1	83872	hgsc.bcm.edu	37	chr1	185902703	185902703	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccctccggtcatccaagtGcctaacaatgttacagtcac	10	9	6	16	1	2	0	2	0	0	0	4	0	4	0	5	1	3	1	5	1	4	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_031935	exon11	c.G1575T	p.V525V	CCAAGTGCCTAAC	.	54	4	54	0	.	.	T	185902703	G	T	185902703	2	4	12	1	0	0	0	0	0	0	0	1	7261	1306	46	3		3	HMCN1	1	185902703	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	10944878	185902703	63347918	17	1582											
ASPM	259266	hgsc.bcm.edu;bcgsc.ca	37	chr1	197071223	197071223	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgaaggatcacagcagaGtgtctttgtctgagataatg	11	11	12	7	0	3	3	1	2	2	2	3	5	3	4	1	1	1	1	1	1	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_018136	exon18	c.C7158A	p.H2386Q	AGCAGAGTGTCTT	.	53	4	41	0	.	.	T	197071223	G	T	197071223	3	4	12	1	0	0	0	0	1	0	0	0	1055	1020	36	3	3319	3	ASPM	1	197071223	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	11168520	197071223	52179398	18	1583											
MAPKAPK2	9261	bcgsc.ca	37	chr1	206904533	206904533	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacggccttgccatctctcCgggcatgaagactcgcatcc	7	8	9	17	3	1	2	0	1	1	1	5	2	3	2	5	2	1	2	5	2	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MAPKAPK2	NM_004759	exon7	c.C818A	p.P273Q	TCTCTCCGGGCAT	.	48	4	30	0	.	45	A	206904533	A	A	206904533	3	1	12	1	0	0	0	0	1	0	0	0	9339	652	23	2	844	2	MAPKAPK2	1	206904533	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	9833310	206904533	42346088	19	1584											
AHCTF1	25909	hgsc.bcm.edu	37	chr1	247025439	247025439	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cagaagtagtaactgacatgGccaaacttttagctttctat	13	13	7	8	0	1	2	0	1	1	1	1	2	1	2	1	1	3	3	1	1	6	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015446	exon28	c.C3584T	p.A1195V	GACATGGCCAAAC	.	68	4	57	0	.	.	A	247025439	G	A	247025439	3	1	12	1	0	0	0	0	1	0	0	0	405	1203	42	3	3279	3	AHCTF1	1	247025439	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	40120906	247025439	2225182	20	1585											
PSME4	23198	hgsc.bcm.edu	37	chr2	54101581	54101581	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttataaaataccatggtctgGaggtaggtcagtactgtgta	12	13	11	5	0	2	0	1	0	1	0	2	1	2	1	1	4	2	3	1	4	7	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PSME4,NS,carcinoma,0,1	PSME4	NM_014614	exon43	c.C4995A	p.L1665L	GGTCTGGAGGTAG	.	36	2	59	0	.	0	T	54101581	G	T	54101581	2	4	12	1	0	0	0	0	0	0	0	1	12758	1161	41	3		3	PSME4	2	54101581	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		54101581	189097792	21	1586											
XPO1	7514	bcgsc.ca	37	chr2	61711107	61711107	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatagtatgtttgaaaGcccaaatgatggaatccaaa	15	11	7	8	0	1	2	1	2	0	0	3	3	3	3	3	1	1	2	3	1	6	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	XPO1	NM_003400	exon21	c.C2642A	p.A881D	TTGAAAGCCCAAA	.	72	4	126	0	.	108	T	61711107	T	T	61711107	3	4	12	1	0	0	0	0	1	0	0	0	17505	971	34	3	593	3	XPO1	2	61711107	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	7609526	61711107	181488266	22	1587											
ZNF638	27332	hgsc.bcm.edu	37	chr2	71661914	71661914	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aggaaaaggagcagaatgagGctgaagaaagaagctctagg	18	4	15	4	0	1	5	0	2	1	3	1	7	1	7	0	4	2	3	0	4	7	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014497	exon28	c.G5914T	p.A1972S	AATGAGGCTGAAG	.	92	4	140	0	.	.	T	71661914	G	T	71661914	3	4	12	1	0	0	0	0	1	0	0	0	18112	1203	42	3	6020	3	ZNF638	2	71661914	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	9950807	71661914	171537459	23	1588											
FER1L5	90342	hgsc.bcm.edu	37	chr2	97370411	97370411	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgatattttcccagaactTccagccccaggagactaatt	12	11	7	11	0	0	3	0	1	0	2	2	4	2	3	4	1	2	0	4	1	3	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FER1L5,colon,carcinoma,0,1	FER1L5	NM_001113382	exon52	c.T6264C	p.L2088L	AGAACTTCCAGCC	.	36	2	37	0	.	0	C	97370411	T	C	97370411	2	2	12	1	0	0	0	0	0	0	0	1	5847	1770	62	4		4	FER1L5	2	97370411	Silent	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	25708497	97370411	145828962	24	1589											
SEMA4C	54910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	97530504	97530504	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtcctgcagggtgtgCatcgcctgcagctggttgaa	6	10	16	9	1	0	1	0	1	0	0	2	2	1	1	2	3	4	5	2	3	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017789	exon9	c.G900A	p.M300I	GGTGTGCATCGCC	.	27	4	65	0	.	.	T	97530504	C	T	97530504	3	4	12	1	0	0	0	0	1	0	0	0	14087	710	25	3	1629	3	SEMA4C	2	97530504	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	160093	97530504	145668869	25	1590											
CCNT2	905	broad.mit.edu	37	chr2	135711353	135711353	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agataaatatagagaaaagcGtaaactagaaactcttgatc	20	9	7	5	1	1	4	0	1	1	3	2	5	1	4	0	0	3	1	0	0	10	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CCNT2	NM_058241	exon9	c.G1328T	p.R443L	AAAAGCGTAAACT	.	46	3	30	0	.	98	T	135711353	G	T	135711353	3	4	12	1	0	0	0	0	1	0	0	0	2957	1145	40	2	1362	2	CCNT2	2	135711353	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	38180849	135711353	107488020	26	1591											
LRP1B	53353	hgsc.bcm.edu	37	chr2	141128375	141128375	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgggctttatttttgcaccGaaactgatcttccttacatt	8	17	7	9	1	1	1	0	1	1	0	2	2	2	1	2	1	3	2	2	1	3	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	LRP1B,bladder,carcinoma,0,1	LRP1B	NM_018557	exon71	c.C10912A	p.R3638R	TGCACCGAAACTG	.	47	2	43	0	.	0	T	141128375	G	T	141128375	2	4	12	1	0	0	0	0	0	0	0	1	9000	1057	37	2		2	LRP1B	2	141128375	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	5417022	141128375	102070998	27	1592											
TTN	7273	hgsc.bcm.edu	37	chr2	179447086	179447086	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctactccatatttattttCagcacaaatacggaactgat	13	13	5	10	1	1	1	1	1	0	0	2	2	2	2	2	1	4	1	2	1	6	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TTN_ENST00000359218,NS,carcinoma,0,5	TTN_ENST00000359218	NM_001267550	exon314	c.G66097T	p.E22033X	TATTTTCAGCACA	.	49	2	84	0	.	0	A	179447086	C	A	179447086	4	1	12	1	0	0	0	0	0	1	0	0	16797	835	29	3	42078	3	TTN	2	179447086	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	38318711	179447086	63752287	28	1593											
TTN	7273	hgsc.bcm.edu	37	chr2	179511839	179511839	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatggttatagatgctttttCttcatatattatttcctcag	10	20	5	6	0	3	1	2	0	1	1	4	1	4	1	1	1	1	2	1	1	6	9	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001267550	exon215	c.G40174T	p.E13392X	CTTTTTCTTCATA	.	94	4	122	0	.	.	A	179511839	C	A	179511839	4	1	12	1	0	0	0	0	0	1	0	0	16797	928	32	3		3	TTN	2	179511839	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	64753	179511839	63687534	29	1594											
TTN	7273	bcgsc.ca	37	chr2	179655547	179655547	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caactaccaccatggatgcaGcagttatctcagtttcctgt	10	12	7	12	0	1	0	1	0	1	0	3	1	2	1	3	1	4	4	3	1	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TTN	NM_001267550	exon11	c.C1688A	p.A563D	GATGCAGCAGTTA	.	63	4	114	0	.	18412	T	179655547	T	T	179655547	3	4	12	1	0	0	0	0	1	0	0	0	16797	971	34	3	109708	3	TTN	2	179655547	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	143708	179655547	63543826	30	1595											
ANKRD44	91526	hgsc.bcm.edu	37	chr2	198051784	198051784	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagttttatggatgagcatcCggatctcctctggatcaccg	8	12	10	11	2	3	1	1	1	2	0	5	4	4	4	3	3	1	2	3	3	1	2	rs149690877	bycluster;alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ANKRD44_ENST00000409919,NS,carcinoma,0,2	ANKRD44_ENST00000409919	NM_153697	exon2	c.G74T	p.R25L	AGCATCCGGATCT	.	41	2	68	0	.	0	A	198051784	C	A	198051784	3	1	12	1	0	0	0	0	1	0	0	0	666	667	23	2	2860	2	ANKRD44	2	198051784	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	18396237	198051784	45147589	31	1596											
SLC23A3	151295	bcgsc.ca	37	chr2	220029918	220029918	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agacccactttgcccacgttGgggaagctggatgcagtgcc	8	8	13	12	1	0	1	0	0	0	1	0	3	0	3	3	3	4	3	3	3	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SLC23A3	NM_001144890	exon8	c.C1164A	p.P388P	CACGTTGGGGAAG	.	41	4	40	0	.	60	T	220029918	T	T	220029918	2	4	12	1	0	0	0	0	0	0	0	1	14519	1335	47	3		3	SLC23A3	2	220029918	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	21978134	220029918	23169455	32	1597											
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	223793606	223793606	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	actacaatactggcagagtgGgagcaccattagtttgctgt	11	11	11	8	0	0	1	0	0	0	1	0	2	0	2	1	2	4	4	1	2	4	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_203372	exon12	c.G1492A	p.G498R	AGAGTGGGAGCAC	.	61	6	92	0	.	.	A	223793606	G	A	223793606	3	1	12	1	0	0	0	0	1	0	0	0	178	1233	43	3	1530	3	ACSL3	2	223793606	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	3763688	223793606	19405767	33	1598											
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	232070973	232070973	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tgggggacattctggctcatGaatctgaattacttggacta	10	13	11	7	0	3	2	1	2	2	0	3	4	3	4	0	4	1	1	0	4	4	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_025139	exon2	c.G22A	p.E8K	GCTCATGAATCTG	.	47	8	64	0	.	.	A	232070973	G	A	232070973	3	1	12	1	0	0	0	0	1	0	0	0	957	1291	45	3	24	3	ARMC9	2	232070973	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	8277367	232070973	11128400	34	1599											
ATG16L1	55054	hgsc.bcm.edu	37	chr2	234189793	234189793	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cctatctggcagtaatgcagGaattacaagcattgaatttg	13	12	9	7	0	1	1	0	1	1	0	1	2	1	2	1	2	3	4	1	2	6	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_030803	exon11	c.G1103T	p.G368V	ATGCAGGAATTAC	.	77	4	88	0	.	.	T	234189793	G	T	234189793	3	4	12	1	0	0	0	0	1	0	0	0	1090	1174	41	3	1145	3	ATG16L1	2	234189793	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2118820	234189793	9009580	35	1600											
PER2	8864	hgsc.bcm.edu	37	chr2	239164502	239164502	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	accacaggccagggcagggcCcgccaggcagtccagggatt	9	3	15	14	1	0	0	0	0	0	0	1	1	1	1	5	5	0	2	5	5	0	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PER2,NS,carcinoma,0,1	PER2	NM_022817	exon18	c.G2116T	p.G706C	CAGGGCCCGCCAG	.	26	2	53	0	.	0	A	239164502	C	A	239164502	3	1	12	1	0	0	0	0	1	0	0	0	11777	623	22	3	1675	3	PER2	2	239164502	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	4974709	239164502	4034871	36	1601											
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	30686282	30686282	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacaacaacggtgcagtcaaGtttccacaactgtgtaaatt	14	10	8	9	1	1	0	1	0	0	0	2	1	2	0	1	1	4	3	1	1	6	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001024847	exon3	c.G213A	p.K71K	AGTCAAGTTTCCA	.	32	11	52	0	.	.	A	30686282	G	A	30686282	2	1	12	1	0	0	0	0	0	0	0	1	15882	1020	36	3		3	TGFBR2	3	30686282	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		30686282	167336148	37	1602											
CLASP2	23122	hgsc.bcm.edu	37	chr3	33592749	33592749	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catattaaaatataccttccGaacatcagaacttttgggtt	14	14	5	8	1	1	1	1	0	0	1	2	2	2	1	2	1	3	1	2	1	7	8	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CLASP2,NS,carcinoma,0,1	CLASP2	NM_015097	exon30	c.C3175A	p.R1059R	CCTTCCGAACATC	.	48	2	95	0	.	0	T	33592749	G	T	33592749	2	4	12	1	0	0	0	0	0	0	0	1	3478	1057	37	2		2	CLASP2	3	33592749	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2906467	33592749	164429681	38	1603											
TRANK1	9881	ucsc.edu;bcgsc.ca	37	chr3	36896814	36896814	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcccttcatgatgctctgggCcgtgtcccccgtgaggaaca	6	9	12	14	2	2	2	1	2	1	0	3	3	3	3	4	2	2	1	4	2	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TRANK1	NM_014831	exon12	c.G4267T	p.A1423S	TCTGGGCCGTGTC	.	15	4	46	0	.	398	A	36896814	C	A	36896814	3	1	12	1	0	0	0	0	1	0	0	0	16515	739	26	3	4558	3	TRANK1	3	36896814	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	3304065	36896814	161125616	39	1604											
CCR1	1230	ucsc.edu	37	chr3	46245105	46245105	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaacggacagctttggattTcttctcatttggtcgtctta	8	16	8	9	2	3	0	1	0	3	0	5	2	3	2	0	3	2	1	0	3	2	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CCR1	NM_001295	exon2	c.A700G	p.K234E	TGGATTTCTTCTC	.	34	4	62	0	.	36	C	46245105	T	C	46245105	3	2	12	1	0	0	0	0	1	0	0	0	2961	1792	62	4	371	4	CCR1	3	46245105	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	9348291	46245105	151777325	40	1605											
NCKIPSD	51517	ucsc.edu;bcgsc.ca	37	chr3	48712059	48712059	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccatctggcactggggtgagGtctcctcctcattcaggatg	6	11	12	12	0	4	1	2	1	2	0	6	2	5	2	3	5	0	1	3	5	0	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NCKIPSD	NM_016453	exon13	c.C2087A	p.T696N	GGTGAGGTCTCCT	.	17	4	23	0	.	52	T	48712059	G	T	48712059	3	4	12	1	0	0	0	0	1	0	0	0	10272	1261	44	3	85	3	NCKIPSD	3	48712059	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2466954	48712059	149310371	41	1606											
CACNA2D2	9254	bcgsc.ca	37	chr3	50403587	50403587	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catccacctcactgaagaacCtgcccacctgaggatgtcag	11	7	8	15	0	2	3	2	2	0	1	3	4	3	4	5	1	2	0	5	1	2	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CACNA2D2	NM_001174051	exon33	c.G2738A	p.R913K	AAGAACCTGCCCA	.	25	4	33	0	.	82	T	50403587	T	T	50403587	3	4	12	1	0	0	0	0	1	0	0	0	2567	681	24	3	748	3	CACNA2D2	3	50403587	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	1691528	50403587	147618843	42	1607											
IQCB1	9657	hgsc.bcm.edu	37	chr3	121508986	121508986	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcatggctctctgtctttGaagttgcaattgtaatttga	8	18	8	7	0	3	2	1	2	3	0	5	2	3	2	0	1	1	4	0	1	3	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	IQCB1,NS,carcinoma,0,1	IQCB1	NM_001023570	exon11	c.C1063A	p.Q355K	GTCTTTGAAGTTG	.	41	2	75	0	.	0	T	121508986	G	T	121508986	3	4	12	1	0	0	0	0	1	0	0	0	7847	1299	45	3	753	3	IQCB1	3	121508986	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	71105399	121508986	76513444	43	1608											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142168326	142168326	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atagtaagttttcatcagtaGcttcctgtataaggtaatgc	12	15	8	6	0	2	0	2	0	0	0	3	0	3	0	1	1	2	6	1	1	6	9	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001184	exon47	c.C7880T	p.A2627V	TCAGTAGCTTCCT	.	33	17	83	0	.	.	A	142168326	G	A	142168326	3	1	12	1	0	0	0	0	1	0	0	0	1202	971	34	3	58	3	ATR	3	142168326	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	20659340	142168326	55854104	44	1609											
MFN1	55669	hgsc.bcm.edu	37	chr3	179082161	179082161	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgctgatgtctttgttttgGtcgcaaactctgaatcaaca	10	15	8	8	1	3	2	1	2	2	0	4	2	3	2	0	1	3	3	0	1	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_033540	exon6	c.G613T	p.V205F	GTTTTGGTCGCAA	.	44	4	86	0	.	.	T	179082161	G	T	179082161	3	4	12	1	0	0	0	0	1	0	0	0	9573	1261	44	3	631	3	MFN1	3	179082161	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	36913835	179082161	18940269	45	1610											
VPS8	23355	hgsc.bcm.edu	37	chr3	184682319	184682319	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaagaaaggagatattCatggtgccttcctaataatg	15	11	10	5	0	1	2	1	0	0	2	2	4	2	3	2	3	1	0	2	3	6	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	VPS8,colon,carcinoma,0,1	VPS8	NM_001009921	exon37	c.C3247A	p.H1083N	GATATTCATGGTG	.	44	2	77	0	.	0	A	184682319	C	A	184682319	3	1	12	1	0	0	0	0	1	0	0	0	17278	826	29	3	3389	3	VPS8	3	184682319	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	5600158	184682319	13340111	46	1611											
ZNF141	7700	hgsc.bcm.edu	37	chr4	367218	367218	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacccttactaaacataagaGaattcatactggagagaaac	19	8	6	8	0	1	2	1	0	0	2	1	5	1	3	1	1	5	0	1	1	8	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZNF141,NS,carcinoma,0,1	ZNF141	NM_003441	exon4	c.G992T	p.R331I	ATAAGAGAATTCA	.	30	2	61	0	.	0	T	367218	G	T	367218	3	4	12	1	0	0	0	0	1	0	0	0	17788	942	33	3	1006	3	ZNF141	4	367218	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		367218	190787058	47	1612											
CORIN	10699	bcgsc.ca	37	chr4	47647102	47647102	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcgcataagcacttacagcaGtttttctcgtccatgtaatc	10	14	6	11	2	1	0	0	0	1	0	5	0	2	0	1	0	3	5	1	0	3	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CORIN	NM_006587	exon14	c.C1953A	p.N651K	ACAGCAGTTTTTC	.	47	4	68	0	.	154	T	47647102	T	T	47647102	3	4	12	1	0	0	0	0	1	0	0	0	3775	1020	36	3	1211	3	CORIN	4	47647102	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	47279884	47647102	143507174	48	1613											
CNGA1	1259	hgsc.bcm.edu	37	chr4	47939627	47939627	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggaaatcctgaagatgtttGgatagtttgtccttgtttct	8	18	10	5	0	1	2	0	1	1	1	3	4	3	4	2	2	0	3	2	2	3	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CNGA1,colon,carcinoma,0,1	CNGA1	NM_001142564	exon10	c.C1091A	p.P364Q	ATGTTTGGATAGT	.	57	3	76	0	.	0	T	47939627	G	T	47939627	3	4	12	1	0	0	0	0	1	0	0	0	3619	1348	47	3	1192	3	CNGA1	4	47939627	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	292525	47939627	143214649	49	1614											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	55956163	55956163	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggatctttataaatatccCgggccaagccaaagtcacag	13	9	8	11	1	2	0	1	0	1	0	3	1	3	1	3	2	1	0	3	2	6	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	KDR,NS,carcinoma,0,1	KDR	NM_002253	exon23	c.G3152A	p.R1051Q	ATATCCCGGGCCA	.	30	8	68	0	.	0	T	55956163	C	T	55956163	3	4	12	1	0	0	0	0	1	0	0	0	8182	652	23	1	950	1	KDR	4	55956163	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	8016536	55956163	135198113	50	1615											
G3BP2	9908	bcgsc.ca	37	chr4	76582169	76582169	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcataacgaaacatatcattGtgaacataaaatttatttgg	17	14	5	5	1	2	1	2	1	0	0	2	2	2	1	0	1	3	0	0	1	7	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	G3BP2	NM_012297	exon5	c.C381A	p.H127Q	ATCATTGTGAACA	.	49	4	78	0	.	52	T	76582169	T	T	76582169	3	4	12	1	0	0	0	0	1	0	0	0	6177	1368	48	3	1099	3	G3BP2	4	76582169	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	20626006	76582169	114572107	51	1616											
INTS12	57117	ucsc.edu	37	chr4	106604263	106604263	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacctattccacctttggatGatgttgccagaccagtcaaa	12	11	7	11	0	1	2	1	1	0	1	2	3	2	3	5	1	2	1	5	1	3	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	INTS12	NM_020395	exon8	c.C1016A	p.S339X	TTGGATGATGTTG	.	19	4	66	0	.	35	T	106604263	G	T	106604263	4	4	12	1	0	0	0	0	0	1	0	0	7821	1294	45	3	376	3	INTS12	4	106604263	Nonsense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	30022094	106604263	84550013	52	1617											
LRIT3	345193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	110788888	110788888	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgctatagtgcttctggaTccactgatgacttgcagtga	8	13	10	10	0	1	3	0	3	1	0	2	4	2	4	2	1	3	3	2	1	2	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_198506	exon3	c.T681A	p.D227E	TCTGGATCCACTG	.	29	13	53	0	.	.	A	110788888	T	A	110788888	3	1	12	1	0	0	0	0	1	0	0	0	8994	1432	50	5	552	5	LRIT3	4	110788888	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	4184625	110788888	80365388	53	1618											
CDH10	1008	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	24488016	24488016	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taatgaaatcccggacgtccGtgttatctggagctgtagga	10	11	12	8	3	1	1	0	1	1	0	3	4	3	4	2	3	1	3	2	3	4	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CDH10,NS,carcinoma,0,1	CDH10	NM_006727	exon12	c.C2123T	p.T708M	ACGTCCGTGTTAT	.	20	4	57	0	.	0	A	24488016	G	A	24488016	3	1	12	1	0	0	0	0	1	0	0	0	3118	1145	40	1	247	1	CDH10	5	24488016	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		24488016	156427244	54	1619											
CDH9	1007	hgsc.bcm.edu	37	chr5	26885775	26885775	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acgagagctcccgtgctcagGccggctgaaaggatcagggc	9	5	15	12	3	2	2	2	1	0	1	3	4	3	3	2	4	2	3	2	4	1	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CDH9,NS,carcinoma,0,1	CDH9	NM_016279	exon11	c.C1830A	p.G610G	GCTCAGGCCGGCT	.	28	2	64	0	.	0	T	26885775	G	T	26885775	2	4	12	1	0	0	0	0	0	0	0	1	3139	1190	42	3		3	CDH9	5	26885775	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2397759	26885775	154029485	55	1620											
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	35965666	35965666	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgctccttgatggtgttgTcaaatgtagactgcatgtcc	9	14	10	8	0	1	2	1	1	0	1	3	2	3	2	2	1	2	4	2	1	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152404	exon4	c.A665G	p.D222G	GTGTTGTCAAATG	.	54	26	115	0	.	.	C	35965666	T	C	35965666	3	2	12	1	0	0	0	0	1	0	0	0	17023	1667	58	4	1004	4	UGT3A1	5	35965666	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	9079891	35965666	144949594	56	1621											
RICTOR	253260	hgsc.bcm.edu	37	chr5	38946582	38946582	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcattacctcctgcatcatGggcaaatgctcttgcacctc	8	12	7	14	0	2	0	1	0	1	0	4	0	3	0	3	1	5	5	3	1	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152756	exon33	c.C4387A	p.H1463N	CATCATGGGCAAA	.	76	4	97	0	.	.	T	38946582	G	T	38946582	3	4	12	1	0	0	0	0	1	0	0	0	13408	1348	47	3	763	3	RICTOR	5	38946582	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	2980916	38946582	141968678	57	1622											
SFXN1	94081	hgsc.bcm.edu;bcgsc.ca	37	chr5	174949392	174949392	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttaagtttggtgtttgctaCacccctgtgttgtgccctgt	4	18	10	9	0	0	0	0	0	0	0	0	0	0	0	3	1	3	4	3	1	2	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_022754	exon10	c.C839T	p.T280I	TTGCTACACCCCT	.	54	4	101	0	.	.	T	174949392	C	T	174949392	3	4	12	1	0	0	0	0	1	0	0	0	14248	478	17	3	873	3	SFXN1	5	174949392	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	136002810	174949392	5965868	58	1623											
NEDD9	4739	bcgsc.ca	37	chr6	11191311	11191311	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggcttggtgcaggttggaGgaatgtcataaaccccctcc	8	10	12	11	0	1	0	1	0	0	0	2	2	2	2	3	5	2	3	3	5	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NEDD9	NM_001142393	exon6	c.C791A	p.P264H	GTTGGAGGAATGT	.	55	4	72	0	.	191	T	11191311	T	T	11191311	3	4	12	1	0	0	0	0	1	0	0	0	10360	1000	35	3	1725	3	NEDD9	6	11191311	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		11191311	159923756	59	1624											
MYLIP	0	broad.mit.edu;bcgsc.ca	37	chr6	16148551	16148554	+	RNA	DEL	AGTT	AGTT	-																															taagcaaggggtaacatcacAgttagtatctactttcctcc																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MYLIP	.	.	.	.	CATCACAGTTAGT	.	28	18	24	0	.	44	-	16148554	AGTT	-	16148551	6	5	12	0	1	1	0	1	0	0	0	0	10103	203	7	0		0	MYLIP	6	16148551	RNA	DEL	AGTT	TCGA-W5-AA2Q-01A-11D-A417-09	4957240	16148551	154966516	60	1625											
HLA-DRA	3122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32410347	32410347	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaggagacggtctggCggcttgaagaatttggacga	13	7	15	6	3	1	4	0	1	1	3	1	7	1	5	0	5	0	1	0	5	4	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	HLA-DRA,colon,carcinoma,0,1	HLA-DRA	NM_019111	exon2	c.C205T	p.R69W	GTCTGGCGGCTTG	.	62	20	72	0	.	0	T	32410347	C	T	32410347	3	4	12	1	0	0	0	0	1	0	0	0	7248	759	27	1	211	1	HLA-DRA	6	32410347	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	16261796	32410347	138704720	61	1626											
UBR2	23304	broad.mit.edu	37	chr6	42600594	42600594	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcagatgagctgaggcagaaGttcctagaagggtttgatgc	11	10	14	6	0	1	6	1	3	0	3	2	6	2	6	1	2	2	4	1	2	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	UBR2	NM_015255	exon13	c.G1497T	p.K499N	GCAGAAGTTCCTA	.	42	3	46	0	.	134	T	42600594	G	T	42600594	3	4	12	1	0	0	0	0	1	0	0	0	16963	1020	36	3	1693	3	UBR2	6	42600594	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	10190247	42600594	128514473	62	1627											
DST	667	hgsc.bcm.edu	37	chr6	56401599	56401599	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttattgagagtcttccacCgtgcattgacatcatccagg	9	13	8	11	1	3	2	1	2	2	1	5	3	5	2	3	1	1	1	3	1	1	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DST_ENST00000370769,NS,haematopoietic_neoplasm,0,2	DST_ENST00000370769	NM_015548	exon43	c.G8879T	p.R2960L	TTCCACCGTGCAT	.	49	2	76	0	.	0	A	56401599	C	A	56401599	3	1	12	1	0	0	0	0	1	0	0	0	4809	652	23	2	6804	2	DST	6	56401599	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	13801005	56401599	114713468	63	1628											
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	71195946	71195946	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	acacagaaagacaaccatctAggtacgtttacaaatagctt	17	9	6	9	1	1	2	0	0	1	2	1	2	1	2	1	1	4	3	1	1	7	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020819	exon9	c.A771G	p.L257L	CCATCTAGGTACG	.	58	17	85	0	.	.	G	71195946	A	G	71195946	2	3	12	1	0	0	0	0	0	0	0	1	5479	434	15	4		4	FAM135A	6	71195946	Silent	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09	14794347	71195946	99919121	64	1629											
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	109769503	109769503	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctaccacggcctgtgcagaCaccaccggtgtgatgcccag	8	6	12	15	2	0	2	0	1	0	1	0	2	0	2	5	2	3	2	5	2	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_022765	exon13	c.G1758A	p.V586V	TGCAGACACCACC	.	19	9	24	0	.	.	T	109769503	C	T	109769503	2	4	12	1	0	0	0	0	0	0	0	1	9617	465	17	3		3	MICAL1	6	109769503	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	38573557	109769503	61345564	65	1630											
TRAF3IP2	10758	bcgsc.ca	37	chr6	111912799	111912799	+	Frame_Shift_Del	DEL	G	-	-																															aggagtctgctgaggcattaGgtaaactttggtctgatttg																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TRAF3IP2,colon,carcinoma,0,1	TRAF3IP2	NM_147686	exon2	c.491delC	p.P164fs	GCATTAGGTAAAC	.	20	4	62	0	.	35	-	111912799	-	-	111912799	7	5	12	1	0	1	0	1	0	0	0	0	16502	1000	35	0	1238	0	TRAF3IP2	6	111912799	Frame_Shift_Del	DEL	G	TCGA-W5-AA2Q-01A-11D-A417-09	2143296	111912799	59202268	66	1631											
SLC35F1	222553	hgsc.bcm.edu	37	chr6	118598679	118598679	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctataatggagcataaggaaCtgttgaaggtgccctgggac	12	9	13	7	0	0	1	0	1	0	0	0	4	0	4	1	4	3	2	1	4	5	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SLC35F1,NS,carcinoma,0,1	SLC35F1	NM_001029858	exon6	c.C817T	p.L273L	AAGGAACTGTTGA	.	39	2	54	0	.	0	T	118598679	C	T	118598679	2	4	12	1	0	0	0	0	0	0	0	1	14643	564	20	3		3	SLC35F1	6	118598679	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	6685880	118598679	52516388	67	1632											
MOXD1	26002	hgsc.bcm.edu	37	chr6	132618355	132618355	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	caaacaagcaagttgatggaGaaatctctgtgcagggaaga	16	7	12	6	0	1	3	0	1	1	2	2	5	1	4	0	2	3	3	0	2	5	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MOXD1_ENST00000336749,rectum,carcinoma,0,2	MOXD1_ENST00000336749	NM_015529	exon12	c.C1779G	p.F593L	GATGGAGAAATCT	.	37	2	68	0	.	0	C	132618355	G	C	132618355	3	2	12	1	0	0	0	0	1	0	0	0	9769	933	33	5	66	5	MOXD1	6	132618355	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	14019676	132618355	38496712	68	1633											
RMND1	55005	hgsc.bcm.edu;bcgsc.ca	37	chr6	151738443	151738443	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcggccaatgctaaggaattGacacgttttatcgtaaagtc	12	12	9	8	3	0	1	0	1	0	0	3	2	0	2	1	2	1	3	1	2	6	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017909	exon10	c.C1171A	p.Q391K	GGAATTGACACGT	.	63	4	100	0	.	.	T	151738443	G	T	151738443	3	4	12	1	0	0	0	0	1	0	0	0	13448	1299	45	3	190	3	RMND1	6	151738443	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	19120088	151738443	19376624	69	1634											
SYTL3	94120	hgsc.bcm.edu	37	chr6	159104022	159104022	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	caagaaatttccaactggagGtaaatgctctttactttttt	12	16	6	7	0	1	1	0	0	1	1	2	2	2	2	1	2	3	2	1	2	6	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SYTL3,NS,carcinoma,0,1	SYTL3	NM_001009991	exon7	c.394+1G>T	.	CTGGAGGTAAATG	.	58	3	102	0	.	0	T	159104022	G	T	159104022	5	4	12	1	0	0	0	0	0	0	1	0	15541	1275	44	3	405	3	SYTL3	6	159104022	Splice_Site	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	7365579	159104022	12011045	70	1635											
THBS2	7058	ucsc.edu;bcgsc.ca	37	chr6	169632768	169632768	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccttgcgtacttgcttttcCgtcttggctgcttccaggcc	2	15	10	14	2	1	0	0	0	1	0	3	0	3	0	4	2	4	4	4	2	1	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	THBS2	NM_003247	exon13	c.G1923A	p.T641T	CTTTTCCGTCTTG	.	22	4	29	0	.	230	T	169632768	C	T	169632768	2	4	12	1	0	0	0	0	0	0	0	1	15914	639	23	1		1	THBS2	6	169632768	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	10528746	169632768	1482299	71	1636											
PDE1C	5137	hgsc.bcm.edu	37	chr7	31855651	31855651	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcttagtttctccagacgtcTttttctcagctttgccagat	6	18	6	11	1	4	2	1	0	4	2	6	2	4	2	2	0	2	2	2	0	1	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PDE1C_ENST00000396193,NS,malignant_melanoma,0,3	PDE1C_ENST00000396193	NM_001191058	exon16	c.A1880G	p.K627R	GACGTCTTTTTCT	.	37	2	68	0	.	0	C	31855651	T	C	31855651	3	2	12	1	0	0	0	0	1	0	0	0	11682	1609	56	4	216	4	PDE1C	7	31855651	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09		31855651	127283012	72	1637											
PDGFRL	5157	broad.mit.edu;bcgsc.ca	37	chr8	17447006	17447006	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aacaccttcccaagaacaagCgtccaaaagaaccaggagag	18	3	8	12	1	0	3	0	0	0	3	2	4	2	3	4	1	4	0	4	1	7	1	rs373035421		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PDGFRL	NM_006207	exon3	c.C85T	p.R29C	AACAAGCGTCCAA	.	72	5	139	0	.	27	T	17447006	C	T	17447006	3	4	12	1	0	0	0	0	1	0	0	0	11710	768	27	1	91	1	PDGFRL	8	17447006	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09		17447006	128917016	73	1638											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41550703	41550703	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cctgttatgtcttcccactgGgcttggtctgttcctcctgt	2	17	9	13	0	2	0	0	0	2	0	5	0	5	0	4	2	0	3	4	2	1	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001142446	exon31	c.C3672A	p.A1224A	CCACTGGGCTTGG	.	22	11	59	0	.	.	T	41550703	G	T	41550703	2	4	12	1	0	0	0	0	0	0	0	1	616	1219	43	3		3	ANK1	8	41550703	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	24103697	41550703	104813319	74	1639											
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133627332	133627332	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gcttttcgttatctttcaaaGagaagtcaattctaagaata	14	15	6	6	1	4	2	2	0	2	2	5	3	4	2	0	0	0	2	0	0	7	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_012472	exon8	c.C926T	p.S309F	TTCAAAGAGAAGT	.	40	15	52	0	.	.	A	133627332	G	A	133627332	3	1	12	1	0	0	0	0	1	0	0	0	9061	942	33	3	494	3	LRRC6	8	133627332	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	92076629	133627332	12736690	75	1640											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu	37	chr8	139705902	139705902	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gactcacggggtttccagctGctccaggagccccatgtgca	7	8	12	14	1	1	0	1	0	0	0	3	2	3	1	4	3	4	4	4	3	0	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152888	exon35	c.C2741A	p.A914E	CCAGCTGCTCCAG	.	45	4	93	0	.	.	T	139705902	G	T	139705902	3	4	12	1	0	0	0	0	1	0	0	0	3704	1319	46	3	2263	3	COL22A1	8	139705902	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	6078570	139705902	6658120	76	1641											
SMARCA2	6595	hgsc.bcm.edu	37	chr9	2115849	2115849	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggcccaagaccgagctcacCgcatcgggcagcagaacgag	12	2	13	14	4	1	2	1	0	0	2	2	4	1	2	3	2	3	4	3	2	2	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2_ENST00000349721	NM_139045	exon25	c.C3484T	p.R1162C	GCTCACCGCATCG	.	29	2	29	0	.	0	T	2115849	C	T	2115849	3	4	12	1	0	0	0	0	1	0	0	0	14823	652	23	1	3578	1	SMARCA2	9	2115849	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09		2115849	139097582	77	1642											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	77470478	77470478	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagacttggcatactggagtAcatctaaattaaagaaataa	18	10	7	6	0	1	2	0	0	1	2	1	3	1	3	0	2	2	2	0	2	8	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017662	exon3	c.T117A	p.C39X	TGGAGTACATCTA	.	57	28	83	0	.	.	T	77470478	A	T	77470478	4	4	12	1	0	0	0	0	0	1	0	0	16651	389	14	5	6099	5	TRPM6	9	77470478	Nonsense_Mutation	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09	75354629	77470478	63742953	78	1643											
SVEP1	79987	hgsc.bcm.edu	37	chr9	113166798	113166798	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tttctgacaggtgaatgtatCtgtatctgtatccatcgtat	9	17	8	7	1	3	2	0	2	3	0	5	2	4	2	1	1	0	4	1	1	5	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SVEP1,NS,carcinoma,0,1	SVEP1	NM_153366	exon39	c.G9475A	p.D3159N	ATGTATCTGTATC	.	22	2	62	0	.	0	T	113166798	C	T	113166798	3	4	12	1	0	0	0	0	1	0	0	0	15476	913	32	3	1280	3	SVEP1	9	113166798	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	35696320	113166798	28046633	79	1644											
PPP6C	5537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	127915867	127915867	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcggggactgatagccCaggtatccacatcttcagga	9	9	10	13	1	2	1	1	1	1	0	5	3	4	3	3	4	1	1	3	4	2	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001123355	exon7	c.G725A	p.W242X	ATAGCCCAGGTAT	.	41	19	82	0	.	.	T	127915867	C	T	127915867	4	4	12	1	0	0	0	0	0	1	0	0	12456	595	21	3	311	3	PPP6C	9	127915867	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	14749069	127915867	13297564	80	1645											
PFKP	5214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	3124594	3124594	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtatgaacgctgccGtccgtgccgtggtgcgcatg	5	9	15	12	5	0	1	0	1	0	0	1	1	1	1	3	2	5	4	3	2	2	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002627	exon2	c.G127A	p.V43I	GCTGCCGTCCGTG	.	22	8	33	0	.	.	A	3124594	G	A	3124594	3	1	12	1	0	0	0	0	1	0	0	0	11814	1145	40	1	133	1	PFKP	10	3124594	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		3124594	132410153	81	1646											
GATA3	2625	hgsc.bcm.edu	37	chr10	8100385	8100385	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcagccccttctccaagaCgtccatccaccacggctccc	7	8	5	21	2	2	1	1	0	2	1	7	1	5	1	7	1	1	1	7	1	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002051	exon3	c.C359T	p.T120M	CCAAGACGTCCAT	.	93	4	134	0	.	.	T	8100385	C	T	8100385	3	4	12	1	0	0	0	0	1	0	0	0	6295	536	19	1	365	1	GATA3	10	8100385	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	4975791	8100385	127434362	82	1647											
ZEB1	6935	broad.mit.edu	37	chr10	31791305	31791305	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	atgaatgcgagtcagatgcaGaaaatgagcaaaaccatgat	18	7	10	6	1	1	5	1	3	0	2	1	6	1	5	1	0	4	2	1	0	5	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZEB1	NM_001174096	exon4	c.G352A	p.E118K	GATGCAGAAAATG	.	54	3	54	0	.	173	A	31791305	G	A	31791305	3	1	12	1	0	0	0	0	1	0	0	0	17681	943	33	3	377	3	ZEB1	10	31791305	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	23690920	31791305	103743442	83	1648											
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	35929045	35929045	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	cggccaggtggaagtactgcGagtagccggcgatggcttcg	7	7	17	10	5	0	0	0	0	0	0	1	3	0	1	2	5	3	3	2	5	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_031866	exon1	c.C1313G	p.S438W	TACTGCGAGTAGC	.	17	8	37	0	.	.	C	35929045	G	C	35929045	3	2	12	1	0	0	0	0	1	0	0	0	6171	1059	37	5	775	5	FZD8	10	35929045	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	4137740	35929045	99605702	84	1649											
ANK3	288	hgsc.bcm.edu	37	chr10	61994461	61994461	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttaccctggttttggcatcGattttagctcctcgatcgag	6	15	9	11	3	0	0	0	0	0	0	4	3	1	0	2	2	2	3	2	2	2	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ANK3,NS,carcinoma,0,1	ANK3	NM_020987	exon8	c.C882A	p.I294I	GGCATCGATTTTA	.	74	3	78	0	.	0	T	61994461	G	T	61994461	2	4	12	1	0	0	0	0	0	0	0	1	618	1048	37	2		2	ANK3	10	61994461	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	26065416	61994461	73540286	85	1650											
ZNF503	84858	broad.mit.edu	37	chr10	77161113	77161115	+	In_Frame_Del	DEL	CCG	CCG	-																															ctgcaccgccgcctccgcctCcgccgccgccgccgccgctg																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZNF503	NM_032772	exon1	c.63_65del	p.21_22del	CCGCCTCCGCCGC	.	6	2	12	0	.	25	-	77161115	CCG	-	77161113	7	5	12	1	0	1	0	1	0	0	0	0	18008	855	30	0	1883	0	ZNF503	10	77161113	In_Frame_Del	DEL	CCG	TCGA-W5-AA2Q-01A-11D-A417-09	15166652	77161113	58373634	86	1651											
DNMBP	23268	hgsc.bcm.edu	37	chr10	101716493	101716493	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacagggcgaccccataGgtccctggctcctcctcatc	6	9	9	17	1	1	0	1	0	0	0	5	1	4	0	5	3	1	2	5	3	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DNMBP,caecum,carcinoma,0,2	DNMBP	NM_015221	exon4	c.C738A	p.T246T	CCCATAGGTCCCT	.	43	2	58	0	.	0	T	101716493	G	T	101716493	2	4	12	1	0	0	0	0	0	0	0	1	4701	987	35	3		3	DNMBP	10	101716493	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	24555380	101716493	33818254	87	1652											
SEMA4G	57715	broad.mit.edu	37	chr10	102743836	102743836	+	Frame_Shift_Del	DEL	A	A	-																															ggaactcagccgcatcctggAaaaaaggaagcacacgcagc																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SEMA4G	NM_017893	exon14	c.2480delA	p.E827fs	TCCTGGAAAAAAG	.	6	2	6	0	.	55	-	102743836	A	-	102743836	7	5	12	1	0	1	0	1	0	0	0	0	14090	246	9	0	2534	0	SEMA4G	10	102743836	Frame_Shift_Del	DEL	A	TCGA-W5-AA2Q-01A-11D-A417-09	1027343	102743836	32790911	88	1653											
BTBD16	118663	hgsc.bcm.edu	37	chr10	124036305	124036305	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctttctttgattaccaagcaGcacaaagctcggctggaacg	11	10	9	11	2	1	1	0	1	1	0	2	2	1	2	1	2	5	4	1	2	4	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BTBD16,bladder,carcinoma,0,1	BTBD16	NM_144587	exon3	c.19-1G>A	.	CAAGCAGCACAAA	.	60	3	66	0	.	0	A	124036305	G	A	124036305	5	1	12	1	0	0	0	0	0	0	1	0	1543	985	34	3	24	3	BTBD16	10	124036305	Splice_Site	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	21292469	124036305	11498442	89	1654											
UBQLNL	143630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5537616	5537616	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tatttttgtctgccagcagaCctgatggacatccactctgg	8	13	9	11	0	2	2	0	1	2	1	3	3	3	3	3	2	2	1	3	2	1	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_145053	exon1	c.G56A	p.G19D	AGCAGACCTGATG	.	15	9	28	0	.	.	T	5537616	C	T	5537616	3	4	12	1	0	0	0	0	1	0	0	0	16961	507	18	3	1375	3	UBQLNL	11	5537616	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09		5537616	129468900	90	1655											
OR52E8	390079	hgsc.bcm.edu	37	chr11	5878458	5878458	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaacaaccatgtacaGgctcctcaggacagcaatgc	13	6	10	12	0	1	0	1	0	0	0	2	2	2	2	2	3	5	3	2	3	4	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	17	2	44	0	.	0	A	5878458	G	A	5878458	2	1	12	1	0	0	0	0	0	0	0	1	11166	991	35	3		3	OR52E8	11	5878458	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	340842	5878458	129128058	91	1656											
CKAP5	9793	hgsc.bcm.edu;bcgsc.ca	37	chr11	46780475	46780475	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggagcacacccattacctGtgtcagagcttggatacttg	9	10	11	11	1	1	1	1	0	0	1	1	3	1	3	2	2	4	2	2	2	2	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001008938	exon35	c.C4687A	p.Q1563K	TTACCTGTGTCAG	.	49	4	75	0	.	.	T	46780475	G	T	46780475	3	4	12	1	0	0	0	0	1	0	0	0	3468	1386	48	3	1451	3	CKAP5	11	46780475	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	40902017	46780475	88226041	92	1657											
FAM111A	63901	hgsc.bcm.edu	37	chr11	58920814	58920814	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	attggtggccatgcatgctgCtggctttgcttatacttacc	6	15	10	10	0	0	0	0	0	0	0	0	0	0	0	2	3	6	5	2	3	3	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FAM111A,NS,carcinoma,0,1	FAM111A	NM_001142520	exon5	c.C1673A	p.A558D	ATGCTGCTGGCTT	.	49	2	100	0	.	0	A	58920814	C	A	58920814	3	1	12	1	0	0	0	0	1	0	0	0	5430	797	28	3	1679	3	FAM111A	11	58920814	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	12140339	58920814	76085702	93	1658											
DLG2	1740	hgsc.bcm.edu;bcgsc.ca	37	chr11	84996326	84996326	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcttctcccatttctGtaaaacttgattggcttctt	7	18	7	9	0	4	1	0	1	4	0	5	2	4	2	1	2	1	2	1	2	2	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001142699	exon4	c.C124A	p.Q42K	ATTTCTGTAAAAC	.	44	4	87	0	.	.	T	84996326	G	T	84996326	3	4	12	1	0	0	0	0	1	0	0	0	4583	1386	48	3	3108	3	DLG2	11	84996326	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	26075512	84996326	50010190	94	1659											
HEPHL1	341208	hgsc.bcm.edu	37	chr11	93806546	93806546	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caaagccgacaaggtctataGcattttaccccatggtgtga	12	10	9	10	1	1	1	0	1	1	0	1	2	1	1	3	2	3	1	3	2	5	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	HEPHL1,NS,carcinoma,0,1	HEPHL1	NM_001098672	exon8	c.G1445T	p.S482I	TCTATAGCATTTT	.	34	2	74	0	.	0	T	93806546	G	T	93806546	3	4	12	1	0	0	0	0	1	0	0	0	7096	971	34	3	1475	3	HEPHL1	11	93806546	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	8810220	93806546	41199970	95	1660											
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	101857706	101857706	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaactcaacaattcaacatcTgcacactgtcagctgaagaa	17	8	5	11	0	4	2	3	1	1	1	4	2	4	2	0	0	5	2	0	0	6	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020802	exon9	c.T3178C	p.C1060R	AACATCTGCACAC	.	42	19	60	0	.	.	C	101857706	T	C	101857706	3	2	12	1	0	0	0	0	1	0	0	0	8269	1580	55	4	3212	4	KIAA1377	11	101857706	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	8051160	101857706	33148810	96	1661											
MMP8	4317	hgsc.bcm.edu	37	chr11	102593358	102593358	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagtgccattcttccttgtaGactgatactggttgcttggt	6	17	10	8	0	1	2	0	1	1	1	2	2	2	2	2	2	3	3	2	2	3	8	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MMP8,shoulder,malignant_melanoma,0,1	MMP8	NM_002424	exon2	c.C149A	p.S50Y	CTTGTAGACTGAT	.	37	2	67	0	.	0	T	102593358	G	T	102593358	3	4	12	1	0	0	0	0	1	0	0	0	9717	942	33	3	1290	3	MMP8	11	102593358	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	735652	102593358	32413158	97	1662											
HTR3B	9177	bcgsc.ca	37	chr11	113813745	113813745	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctatgtcgtgagtctGctgattcctagcatctttct	5	17	9	10	1	4	2	0	2	4	0	6	2	5	2	1	1	2	2	1	1	2	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HTR3B	NM_006028	exon7	c.G738A	p.L246L	GAGTCTGCTGATT	.	12	3	31	0	.	50	A	113813745	A	A	113813745	2	1	12	1	0	0	0	0	0	0	0	1	7489	1306	46	3		3	HTR3B	11	113813745	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	11220387	113813745	21192771	98	1663											
REXO2	25996	hgsc.bcm.edu	37	chr11	114310340	114310340	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtgtccgcgaaggtggCgcagccatggcggcagggga	7	4	20	10	5	0	0	0	0	0	0	1	3	1	1	2	7	1	2	2	7	1	0	rs371745776		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015523	exon1	c.C90T	p.G30G	AGGTGGCGCAGCC	.	92	3	177	0	.	.	T	114310340	C	T	114310340	2	4	12	1	0	0	0	0	0	0	0	1	13294	755	27	1		1	REXO2	11	114310340	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	496595	114310340	20696176	99	1664											
CADM1	23705	hgsc.bcm.edu	37	chr11	115049489	115049489	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgagccttcttcacctgctCgggaatctgttaaaatcaga	10	12	8	11	2	4	1	2	0	2	1	6	3	4	2	2	1	2	2	2	1	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CADM1,NS,carcinoma,0,1	CADM1	NM_014333	exon9	c.G1085T	p.R362L	CCTGCTCGGGAAT	.	25	2	47	0	.	0	A	115049489	C	A	115049489	3	1	12	1	0	0	0	0	1	0	0	0	2584	884	31	2	251	2	CADM1	11	115049489	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	739149	115049489	19957027	100	1665											
CRTAM	56253	hgsc.bcm.edu	37	chr11	122726478	122726478	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctcataatccacacttatgGcaaaaattcaacggtggact	14	11	6	10	1	2	0	2	0	1	0	4	1	3	1	1	3	1	1	1	3	5	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CRTAM,caecum,carcinoma,0,2	CRTAM	NM_019604	exon5	c.G566A	p.G189D	CTTATGGCAAAAA	.	43	2	97	0	.	0	A	122726478	G	A	122726478	3	1	12	1	0	0	0	0	1	0	0	0	3920	1203	42	3	584	3	CRTAM	11	122726478	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	7676989	122726478	12280038	101	1666											
GLB1L3	112937	hgsc.bcm.edu	37	chr11	134188524	134188524	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaagccaccattcctttcaGaactggaattatggatttgt	11	14	7	9	0	2	1	2	0	0	1	3	3	3	3	3	2	2	0	3	2	4	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	GLB1L3_ENST00000431683,colon,carcinoma,0,2	GLB1L3_ENST00000431683	NM_001080407	exon19	c.1780-1G>T	.	CTTTCAGAACTGG	.	41	2	77	0	.	0	T	134188524	G	T	134188524	5	4	12	1	0	0	0	0	0	0	1	0	6472	956	33	3	1853	3	GLB1L3	11	134188524	Splice_Site	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	11462046	134188524	817992	102	1667											
ARNTL2	56938	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	27573423	27573423	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagcagaggggggcctGggagaccctggggacttcag	9	6	18	8	0	1	3	1	0	0	3	1	5	1	4	2	6	1	1	2	6	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020183	exon17	c.G1869T	p.L623L	GGGCCTGGGAGAC	.	43	4	75	0	.	.	T	27573423	G	T	27573423	2	4	12	1	0	0	0	0	0	0	0	1	967	1335	47	3		3	ARNTL2	12	27573423	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		27573423	106278472	103	1668											
FAR2	55711	hgsc.bcm.edu	37	chr12	29469923	29469923	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttatctatgactgctatctgCggctcactggaaggaagccc	9	11	10	11	1	3	1	1	1	2	0	3	3	3	3	1	3	3	2	1	3	5	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FAR2,colon,carcinoma,0,1	FAR2	NM_018099	exon9	c.C1105T	p.R369W	TATCTGCGGCTCA	.	25	2	38	0	.	0	T	29469923	C	T	29469923	3	4	12	1	0	0	0	0	1	0	0	0	5708	759	27	1	1135	1	FAR2	12	29469923	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	1896500	29469923	104381972	104	1669											
KIF21A	55605	hgsc.bcm.edu;bcgsc.ca	37	chr12	39701493	39701493	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctactgttcgactggtacttGcagaacaagcatctccaaga	12	10	8	11	1	1	2	0	0	1	2	3	3	1	2	1	1	5	4	1	1	5	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001173464	exon34	c.C4316A	p.A1439E	GTACTTGCAGAAC	.	54	4	82	0	.	.	T	39701493	G	T	39701493	3	4	12	1	0	0	0	0	1	0	0	0	8330	1319	46	3	728	3	KIF21A	12	39701493	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	10231570	39701493	94150402	105	1670											
NELL2	4753	broad.mit.edu;bcgsc.ca	37	chr12	44926453	44926453	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	accatccaggcaggttaatgCaattagcacgactgtcacat	13	9	8	11	1	1	0	1	0	0	0	2	1	2	0	2	2	2	4	2	2	3	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NELL2	NM_001145107	exon17	c.G1865A	p.C622Y	TTAATGCAATTAG	.	17	6	43	0	.	286	T	44926453	C	T	44926453	3	4	12	1	0	0	0	0	1	0	0	0	10381	710	25	3	755	3	NELL2	12	44926453	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	5224960	44926453	88925442	106	1671											
PTPRR	5801	ucsc.edu;bcgsc.ca	37	chr12	71139661	71139661	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaacagaggtagcggtggtaGctttgatctcaggagcacct	11	9	13	8	1	1	2	1	1	1	1	2	3	1	3	1	4	4	4	1	4	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PTPRR	NM_002849	exon6	c.C944T	p.A315V	GTGGTAGCTTTGA	.	30	4	70	0	.	109	A	71139661	G	A	71139661	3	1	12	1	0	0	0	0	1	0	0	0	12862	971	34	3	1065	3	PTPRR	12	71139661	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	26213208	71139661	62712234	107	1672											
NAV3	89795	bcgsc.ca	37	chr12	78583941	78583941	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atatgtaataaccaaatctgGaaggaaaaaaacagaggatg	21	7	9	4	0	1	1	0	0	1	1	1	4	1	4	1	3	2	1	1	3	8	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NAV3	NM_014903	exon33	c.G6167T	p.G2056V	AATCTGGAAGGAA	.	27	3	62	0	.	506	T	78583941	T	T	78583941	3	4	12	1	0	0	0	0	1	0	0	0	10233	1174	41	3	6297	3	NAV3	12	78583941	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	7444280	78583941	55267954	108	1673											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	83289597	83289597	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttctctcttttggtttcagAggaagaacttgtcgcttttc	6	18	8	9	1	3	2	1	0	2	2	6	3	3	3	0	2	1	2	0	2	2	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152588	exon3	c.A655G	p.R219G	TTTCAGAGGAAGA	.	33	15	68	0	.	.	G	83289597	A	G	83289597	3	3	12	1	0	0	0	0	1	0	0	0	16321	318	11	4	665	4	TMTC2	12	83289597	Missense_Mutation	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09	4705656	83289597	50562298	109	1674											
RPH3A	22895	hgsc.bcm.edu	37	chr12	113266158	113266158	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttcagcaacagttctaaccGttggatgtaccccagtgacc	10	10	9	12	1	2	1	1	1	1	0	2	2	2	2	4	1	4	5	4	1	3	5	rs139903605		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RPH3A,rectum,carcinoma,0,1	RPH3A	NM_001143854	exon3	c.G35A	p.R12H	CTAACCGTTGGAT	.	43	2	61	0	0.000	0	A	113266158	G	A	113266158	3	1	12	1	0	0	0	0	1	0	0	0	13603	1145	40	1	37	1	RPH3A	12	113266158	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	29976561	113266158	20585737	110	1675											
PLBD2	196463	ucsc.edu;bcgsc.ca	37	chr12	113812331	113812331	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacagctacgaaggccGtgtgagcttcccagctggga	9	6	16	10	2	0	1	0	1	0	0	1	5	1	4	2	4	4	3	2	4	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PLBD2	NM_173542	exon4	c.G596A	p.R199H	AAGGCCGTGTGAG	.	27	4	65	0	.	33	A	113812331	G	A	113812331	3	1	12	1	0	0	0	0	1	0	0	0	12074	1145	40	1	610	1	PLBD2	12	113812331	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	546173	113812331	20039564	111	1676											
BRCA2	675	hgsc.bcm.edu	37	chr13	32971139	32971139	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaagactgtacttcagggccGtacactgctcaaatcattcc	12	10	7	12	1	3	1	3	0	0	1	4	1	4	1	2	1	3	3	2	1	4	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BRCA2_ENST00000544455,colon,carcinoma,0,2	BRCA2_ENST00000544455	NM_000059	exon26	c.G9606A	p.P3202P	AGGGCCGTACACT	.	47	2	87	0	.	0	A	32971139	G	A	32971139	2	1	12	1	0	0	0	0	0	0	0	1	1501	1132	40	1		1	BRCA2	13	32971139	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		32971139	82198739	112	1677											
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	37679178	37679178	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taccagtgcatgtgggggatGccaaccccaccttgaagaat	11	8	11	11	0	0	2	0	1	0	1	0	3	0	3	5	2	4	1	5	2	4	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_145203	exon1	c.C216A	p.G72G	GGGGATGCCAACC	.	46	4	77	0	.	.	T	37679178	G	T	37679178	2	4	12	1	0	0	0	0	0	0	0	1	3976	1306	46	3		3	CSNK1A1L	13	37679178	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	4708039	37679178	77490700	113	1678											
NEK5	341676	hgsc.bcm.edu	37	chr13	52684525	52684525	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cccaagctttgccaccattcCgttcttgctaagaaaaatgt	11	12	6	12	1	1	1	0	0	1	1	2	1	2	1	4	0	3	3	4	0	4	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	NEK5_ENST00000355568,NS,carcinoma,+1,2	NEK5_ENST00000355568	NM_199289	exon7	c.G418T	p.G140X	CCATTCCGTTCTT	.	89	4	131	0	.	+1	A	52684525	C	A	52684525	4	1	12	1	0	0	0	0	0	1	0	0	10374	661	23	2	1772	2	NEK5	13	52684525	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	15005347	52684525	62485353	114	1679											
OR4K2	390431	hgsc.bcm.edu	37	chr14	20344676	20344676	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccaaagatgattacaGattacctaacaggtcacaaa	17	7	5	12	0	1	3	1	1	0	2	1	3	1	3	4	1	3	0	4	1	5	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OR4K2,NS,carcinoma,0,1	OR4K2	NM_001005501	exon1	c.G250T	p.D84Y	ATTACAGATTACC	.	43	2	91	0	.	0	T	20344676	G	T	20344676	3	4	12	1	0	0	0	0	1	0	0	0	11120	942	33	3	252	3	OR4K2	14	20344676	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		20344676	87004864	115	1680											
MIPOL1	145282	hgsc.bcm.edu	37	chr14	37736219	37736219	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagatgagcaactgactatGaattctgagaaaagtatgca	16	9	9	7	0	1	5	0	4	1	2	1	6	1	5	1	0	3	3	1	0	6	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MIPOL1,NS,carcinoma,0,1	MIPOL1	NM_001195296	exon6	c.G96T	p.M32I	GACTATGAATTCT	.	38	2	68	0	.	0	T	37736219	G	T	37736219	3	4	12	1	0	0	0	0	1	0	0	0	9641	1290	45	3	102	3	MIPOL1	14	37736219	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	17391543	37736219	69613321	116	1681											
ABHD12B	145447	hgsc.bcm.edu	37	chr14	51370833	51370833	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcatacaggaacaaagagagGgtcaagatggttatctttcc	14	9	11	7	0	2	2	1	0	1	2	3	4	3	3	1	3	2	2	1	3	5	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ABHD12B_ENST00000337334,NS,haematopoietic_neoplasm,0,2	ABHD12B_ENST00000337334	NM_001206673	exon12	c.G984T	p.R328S	AGAGAGGGTCAAG	.	27	2	55	0	.	0	T	51370833	G	T	51370833	3	4	12	1	0	0	0	0	1	0	0	0	77	1223	43	3	809	3	ABHD12B	14	51370833	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	13634614	51370833	55978707	117	1682											
RDH12	145226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68195982	68195982	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccggcactcctccctgctcTgcctgctctggcggctcttc	1	12	9	19	2	3	0	0	0	3	0	7	0	6	0	4	3	3	4	4	3	0	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152443	exon8	c.T733A	p.C245S	CTGCTCTGCCTGC	.	14	5	46	0	.	.	A	68195982	T	A	68195982	3	1	12	1	0	0	0	0	1	0	0	0	13243	1580	55	5	755	5	RDH12	14	68195982	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	16825149	68195982	39153558	118	1683											
ANGEL1	23357	broad.mit.edu;bcgsc.ca	37	chr14	77275681	77275681	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	catctcagggaaaggctcatCcaggttctctgcagcccgaa	10	8	10	13	1	3	0	2	0	2	0	6	2	4	1	2	3	2	3	2	3	2	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ANGEL1	NM_015305	exon2	c.G370T	p.D124Y	GCTCATCCAGGTT	.	6	3	19	0	.	63	A	77275681	C	A	77275681	3	1	12	1	0	0	0	0	1	0	0	0	604	855	30	3	1678	3	ANGEL1	14	77275681	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	9079699	77275681	30073859	119	1684											
TRIP11	9321	hgsc.bcm.edu;bcgsc.ca	37	chr14	92474186	92474186	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaattttaaaagtgacatcTgaagttcttcctgaaatgat	14	15	6	6	0	3	4	1	4	2	0	4	4	4	4	1	0	0	1	1	0	5	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_004239	exon10	c.A1325G	p.Q442R	GACATCTGAAGTT	.	62	4	60	0	.	.	C	92474186	T	C	92474186	3	2	12	1	0	0	0	0	1	0	0	0	16616	1580	55	4	4662	4	TRIP11	14	92474186	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	15198505	92474186	14875354	120	1685											
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102891358	102891358	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttataccaggactctgtaaGcaaagtgatctaaccttgta	13	13	7	8	0	2	1	0	1	2	0	2	2	2	2	2	1	3	3	2	1	6	7	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001172631	exon6	c.G681T	p.K227N	CTGTAAGCAAAGT	.	41	18	89	0	.	.	T	102891358	G	T	102891358	3	4	12	1	0	0	0	0	1	0	0	0	15803	962	34	3	699	3	TECPR2	14	102891358	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	10417172	102891358	4458182	121	1686											
TP53BP1	7158	hgsc.bcm.edu	37	chr15	43708493	43708493	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcccatactgctctctCagtctgtttccttgctccaa	7	13	5	16	0	3	0	1	0	2	0	6	0	5	0	4	0	4	3	4	0	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TP53BP1,NS,carcinoma,0,1	TP53BP1	NM_001141980	exon22	c.G4803T	p.L1601L	CTCTCTCAGTCTG	.	32	3	49	0	.	0	A	43708493	C	A	43708493	2	1	12	1	0	0	0	0	0	0	0	1	16444	813	29	3		3	TP53BP1	15	43708493	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09		43708493	58822899	122	1687											
NEDD4	4734	hgsc.bcm.edu	37	chr15	56258687	56258687	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ttacctagctcccaatatatCcttcttggcaaggcctattc	9	14	5	13	0	1	0	0	0	1	0	4	0	3	0	4	2	2	2	4	2	7	8	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_006154	exon2	c.G103A	p.D35N	ATATATCCTTCTT	.	78	2	121	0	.	.	T	56258687	C	T	56258687	3	4	12	1	0	0	0	0	1	0	0	0	10357	855	30	3	4263	3	NEDD4	15	56258687	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	12550194	56258687	46272705	123	1688											
TLN2	83660	hgsc.bcm.edu	37	chr15	62939540	62939540	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttaaagatttgtgtgCgccactgcaacgtggtgaag	9	12	12	8	2	0	2	0	1	0	1	1	2	1	2	2	1	3	1	2	1	4	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TLN2,bladder,carcinoma,0,1	TLN2	NM_015059	exon1	c.C31T	p.R11C	TGTGTGCGCCACT	.	27	3	47	0	.	0	T	62939540	C	T	62939540	3	4	12	1	0	0	0	0	1	0	0	0	16008	768	27	1	33	1	TLN2	15	62939540	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	6680853	62939540	39591852	124	1689											
WDR61	80349	hgsc.bcm.edu	37	chr15	78580718	78580718	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tcaaggagcgaatgggcatgGcatggcctgaaattcataaa	14	8	12	7	1	2	1	2	1	0	0	2	3	2	2	1	4	1	2	1	4	5	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	WDR61,colon,carcinoma,0,1	WDR61	NM_025234	exon8	c.C569A	p.A190D	GGCATGGCATGGC	.	27	2	47	0	.	0	T	78580718	G	T	78580718	3	4	12	1	0	0	0	0	1	0	0	0	17372	1203	42	3	364	3	WDR61	15	78580718	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	15641178	78580718	23950674	125	1690											
RCCD1	91433	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	91504867	91504867	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggtaaatatggacagctgggCcacgaggacaccaccagctt	12	6	12	11	1	0	0	0	0	0	0	0	3	0	2	3	4	2	3	3	4	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001017919	exon8	c.C999T	p.G333G	GCTGGGCCACGAG	.	27	4	52	0	.	.	T	91504867	C	T	91504867	2	4	12	1	0	0	0	0	0	0	0	1	13227	726	26	3		3	RCCD1	15	91504867	Silent	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	12924149	91504867	11026525	126	1691											
PKD1	5310	hgsc.bcm.edu;bcgsc.ca	37	chr16	2162835	2162835	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccagcacgcccgccgtcaGtgctagcgtggcattggggg	6	6	15	14	4	1	0	1	0	0	0	1	0	1	0	3	3	3	3	3	3	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_000296	exon13	c.C3115A	p.L1039M	CCGTCAGTGCTAG	.	79	5	86	0	.	.	T	2162835	G	T	2162835	3	4	12	1	0	0	0	0	1	0	0	0	12011	1020	36	3	9932	3	PKD1	16	2162835	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		2162835	88191918	127	1692											
MGRN1	23295	hgsc.bcm.edu	37	chr16	4733264	4733264	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgagtcgtcgtcaccaCagcaaggtgagcgcctcctt	8	10	11	12	3	1	3	1	3	0	0	4	3	2	3	3	1	2	1	3	1	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015246	exon15	c.C1522T	p.Q508X	TCACCACAGCAAG	.	61	4	74	0	.	.	T	4733264	C	T	4733264	4	4	12	1	0	0	0	0	0	1	0	0	9608	479	17	3	1583	3	MGRN1	16	4733264	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	2570429	4733264	85621489	128	1693											
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	11859523	11859523	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtggcctgaatatctacatTcctcctcagcagcaacatct	11	11	6	13	0	3	1	1	1	2	0	5	1	5	1	3	1	4	2	3	1	4	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014153	exon14	c.A1541G	p.E514G	CTACATTCCTCCT	.	33	9	51	0	.	.	C	11859523	T	C	11859523	3	2	12	1	0	0	0	0	1	0	0	0	17631	1783	62	4	1414	4	ZC3H7A	16	11859523	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	7126259	11859523	78495230	129	1694											
INO80E	8479	bcgsc.ca	37	chr16	30007577	30007577	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggcgggagcggcacggcaGccactgcttggggtagcggg	6	4	21	10	4	0	0	0	0	0	0	0	2	0	1	1	7	4	4	1	7	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	INO80E	.	.	.	.	ACGGCAGCCACTG	.	31	5	44	0	.	26	A	30007577	A	A	30007577	3	1	12	1	0	0	0	0	1	0	0	0	7794	986	34	3		3	INO80E	16	30007577	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	18148054	30007577	60347176	130	1695											
ARMC5	79798	hgsc.bcm.edu	37	chr16	31471168	31471169	+	Frame_Shift_Ins	INS	-	-	C																															agccccgcccccgcgtcgggINSccccgccccctccgctgtgt																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_024742	exon1	c.323_324insC	p.G108fs	CGTCGGGCCCCGC	.	36	10	43	0	.	.	C	31471169	-	C	31471168	7	5	12	1	0	1	1	0	0	0	0	0	953	1203	42	0	325	0	ARMC5	16	31471168	Frame_Shift_Ins	INS	-	TCGA-W5-AA2Q-01A-11D-A417-09	1463591	31471168	58883585	131	1696											
C16orf86	388284	hgsc.bcm.edu;bcgsc.ca	37	chr16	67702300	67702300	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgggcccaggcctcgctttgCcctgtcccagtccactagtg	4	10	11	16	1	0	0	0	0	0	0	3	0	2	0	5	2	1	1	5	2	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001012984	exon4	c.C751T	p.P251S	GCTTTGCCCTGTC	.	52	4	59	0	.	.	T	67702300	C	T	67702300	3	4	12	1	0	0	0	0	1	0	0	0	1846	739	26	3	765	3	C16orf86	16	67702300	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	36231132	67702300	22652453	132	1697											
HAS3	3038	bcgsc.ca	37	chr16	69148716	69148716	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gttatacagcttttctaccgGggccgcatctggaacattct	8	13	9	11	2	3	0	0	0	3	0	3	1	3	1	2	3	4	3	2	3	4	6	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HAS3	NM_005329	exon4	c.G1209T	p.R403R	CTACCGGGGCCGC	.	17	3	26	0	.	61	T	69148716	T	T	69148716	2	4	12	1	0	0	0	0	0	0	0	1	7004	1219	43	3		3	HAS3	16	69148716	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	1446416	69148716	21206037	133	1698											
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74505136	74505136	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttctggtgtttgttctgtaTcagacactccatcaggtccc	6	15	8	12	0	4	1	2	0	2	1	6	1	6	1	2	2	0	3	2	2	1	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001145667	exon15	c.A2164T	p.I722L	TCTGTATCAGACA	.	23	11	49	0	.	.	A	74505136	T	A	74505136	3	1	12	1	0	0	0	0	1	0	0	0	6478	1435	50	5	1503	5	GLG1	16	74505136	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	5356420	74505136	15849617	134	1699											
SNAI3	333929	ucsc.edu;bcgsc.ca	37	chr16	88747696	88747696	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agtgcagctgccggtgcctgGccagcccggccagcgtgtgg	4	6	17	14	3	0	0	0	0	0	0	0	0	0	0	5	4	6	2	5	4	0	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SNAI3	NM_178310	exon2	c.C503T	p.A168V	TGCCTGGCCAGCC	.	33	4	40	0	.	23	A	88747696	G	A	88747696	3	1	12	1	0	0	0	0	1	0	0	0	14882	1203	42	3	383	3	SNAI3	16	88747696	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	14242560	88747696	1607057	135	1700											
MYBBP1A	10514	broad.mit.edu	37	chr17	4458229	4458229	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgtgattagacgcttcAgggcatatttcatctcggac	8	12	10	11	3	3	2	2	1	1	1	5	3	4	3	1	2	0	2	1	2	2	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MYBBP1A	NM_014520	exon2	c.T221A	p.L74Q	CGCTTCAGGGCAT	.	52	3	97	0	.	69	T	4458229	A	T	4458229	3	4	12	1	0	0	0	0	1	0	0	0	10056	188	7	5	3905	5	MYBBP1A	17	4458229	Missense_Mutation	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09		4458229	76736981	136	1701											
ALOX15	246	bcgsc.ca	37	chr17	4542400	4542400	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cccggtgtttctggaacaggCcctgagggtcctcgcccaca	6	8	12	15	2	1	1	0	1	1	0	3	2	2	2	4	4	1	1	4	4	1	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ALOX15	NM_001140	exon3	c.G365A	p.G122D	AACAGGCCCTGAG	.	18	3	44	0	.	70	T	4542400	T	T	4542400	3	4	12	1	0	0	0	0	1	0	0	0	534	739	26	3	1671	3	ALOX15	17	4542400	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09	84171	4542400	76652810	137	1702											
TMEM11	8834	broad.mit.edu;bcgsc.ca	37	chr17	21101947	21101947	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acggggtgaagaggcaggcgGtgcccgccagcacggccgtc	7	3	18	13	5	0	2	0	1	0	1	1	2	0	2	3	6	2	2	3	6	1	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TMEM11	NM_003876	exon2	c.C269T	p.T90I	CAGGCGGTGCCCG	.	14	7	29	0	.	15	A	21101947	G	A	21101947	3	1	12	1	0	0	0	0	1	0	0	0	16086	1261	44	3	313	3	TMEM11	17	21101947	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	16559547	21101947	60093263	138	1703											
SPAG9	9043	hgsc.bcm.edu	37	chr17	49059961	49059961	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agactttgtcatgtaccacaGtcatgcaacggatggaatga	13	10	10	8	1	2	2	2	1	0	1	2	4	2	4	1	2	3	2	1	2	3	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SPAG9_ENST00000262013,NS,carcinoma,0,2	SPAG9_ENST00000262013	NM_001130528	exon25	c.C3161A	p.T1054N	ACCACAGTCATGC	.	51	3	75	1	.	0	T	49059961	G	T	49059961	3	4	12	1	0	0	0	0	1	0	0	0	15041	1029	36	3	828	3	SPAG9	17	49059961	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	27958014	49059961	32135249	139	1704											
ABCA8	10351	hgsc.bcm.edu	37	chr17	66877304	66877304	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ctccagttatcaccttaatgGatgtgcttttaccagctcca	9	14	6	12	0	1	0	1	0	0	0	3	1	3	1	4	1	3	3	4	1	3	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ABCA8,NS,carcinoma,0,1	ABCA8	NM_007168	exon30	c.C3875A	p.S1292Y	TTAATGGATGTGC	.	48	2	61	0	.	0	T	66877304	G	T	66877304	3	4	12	1	0	0	0	0	1	0	0	0	38	1174	41	3	906	3	ABCA8	17	66877304	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	17817343	66877304	14317906	140	1705											
RNF213	57674	hgsc.bcm.edu	37	chr17	78302195	78302195	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcactggattggagaagggaGgaactgttacttctaaagaa	14	9	13	5	0	1	2	0	0	1	2	1	6	1	5	0	4	2	2	0	4	6	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RNF213_ENST00000456466,NS,carcinoma,0,2	RNF213_ENST00000456466	NM_001256071	exon20	c.G3435T	p.E1145D	AAGGGAGGAACTG	.	49	2	84	0	.	0	T	78302195	G	T	78302195	3	4	12	1	0	0	0	0	1	0	0	0	13529	991	35	3	3828	3	RNF213	17	78302195	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	11424891	78302195	2893015	141	1706											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21437935	21437935	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtgtgacccagggaccGgggcttgcctctgcaaggta	7	8	16	10	1	1	1	0	1	1	0	1	3	1	2	3	4	2	3	3	4	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	LAMA3,NS,carcinoma,0,3	LAMA3	NM_001127717	exon33	c.G4264C	p.G1422R	GGGACCGGGGCTT	.	22	8	61	0	.	0	C	21437935	G	C	21437935	3	2	12	1	0	0	0	0	1	0	0	0	8646	1116	39	5	4394	5	LAMA3	18	21437935	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		21437935	56639313	142	1707											
PLIN4	729359	hgsc.bcm.edu	37	chr19	4511680	4511680	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgagcccagtggacacagcAtctttagtgccagtcaggac	10	8	12	11	0	2	1	1	1	1	0	2	3	2	3	2	2	3	1	2	2	1	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PLIN4_ENST00000301286,right_lower_lobe,carcinoma,0,2	PLIN4_ENST00000301286	NM_001080400	exon3	c.T2250C	p.D750D	CACAGCATCTTTA	.	16	8	35	0	.	0	G	4511680	A	G	4511680	2	3	12	1	0	0	0	0	0	0	0	1	12140	214	8	4		4	PLIN4	19	4511680	Silent	SNP	A	TCGA-W5-AA2Q-01A-11D-A417-09		4511680	54617303	143	1708											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6678260	6678260	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgcacttgatggggctgaTgaacgtgcgctgctgtccaa	7	11	13	10	2	1	3	0	3	1	0	2	3	2	3	1	2	4	4	1	2	2	1	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_000064	exon40	c.A4753G	p.I1585V	GGCTGATGAACGT	.	18	8	36	0	.	.	C	6678260	T	C	6678260	3	2	12	1	0	0	0	0	1	0	0	0	2218	1464	51	4	246	4	C3	19	6678260	Missense_Mutation	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	2166580	6678260	52450723	144	1709											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9068625	9068625	+	Frame_Shift_Del	DEL	C	C	-																															tccttaaattttgaggtgaaCgagtcacaggttctaagttt																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_024690	exon3	c.18822delT	p.R6274fs	GGTGAACGAGTCA	.	43	16	48	0	.	.	-	9068625	C	-	9068625	7	5	12	1	0	1	0	1	0	0	0	0	10021	536	19	0	25030	0	MUC16	19	9068625	Frame_Shift_Del	DEL	C	TCGA-W5-AA2Q-01A-11D-A417-09	2390365	9068625	50060358	145	1710											
ZNF317	57693	hgsc.bcm.edu	37	chr19	9271878	9271878	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaccagtcaacgctgaagacGcacatgcgaagccacacggg	14	3	11	13	4	1	2	1	1	0	1	1	3	1	2	2	1	4	2	2	1	4	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZNF317,colon,carcinoma,0,1	ZNF317	NM_020933	exon7	c.G1557T	p.T519T	GAAGACGCACATG	.	21	2	35	0	.	0	T	9271878	G	T	9271878	2	4	12	1	0	0	0	0	0	0	0	1	17892	1074	38	2		2	ZNF317	19	9271878	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	203253	9271878	49857105	146	1711											
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11230846	11230846	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caggttccgatgtcaacttgTtggctgaaaacctactgtcc	9	12	9	11	1	1	1	1	1	0	0	3	2	3	1	3	2	3	3	3	2	4	4	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001195798	exon13	c.T1924C	p.L642L	AACTTGTTGGCTG	.	44	23	68	0	.	.	C	11230846	T	C	11230846	2	2	12	1	0	0	0	0	0	0	0	1	8743	1722	60	4		4	LDLR	19	11230846	Silent	SNP	T	TCGA-W5-AA2Q-01A-11D-A417-09	1958968	11230846	47898137	147	1712											
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	51918278	51918278	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	caagccaccagcgcagagagGgggccgggctggcctgggag	8	2	19	12	2	0	1	0	0	0	1	0	3	0	2	4	5	2	2	4	5	1	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_033130	exon8	c.C1415G	p.P472R	AGAGAGGGGGCCG	.	39	17	64	0	.	.	C	51918278	G	C	51918278	3	2	12	1	0	0	0	0	1	0	0	0	14361	1232	43	5	694	5	SIGLEC10	19	51918278	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	40687432	51918278	7210705	148	1713											
TGIF2	60436	hgsc.bcm.edu	37	chr20	35219439	35219439	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcagatgtggccctccccCgtggcagcagcccctcagtg	5	7	11	18	1	2	1	2	0	0	1	3	1	3	1	6	2	2	2	6	2	0	0	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_021809	exon3	c.C319A	p.R107S	CTCCCCCGTGGCA	.	69	4	126	0	.	.	A	35219439	C	A	35219439	3	1	12	1	0	0	0	0	1	0	0	0	15886	652	23	2	325	2	TGIF2	20	35219439	Missense_Mutation	SNP	C	TCGA-W5-AA2Q-01A-11D-A417-09		35219439	27806081	149	1714											
ZFP64	55734	broad.mit.edu	37	chr20	50701719	50701719	+	Frame_Shift_Del	DEL	C	C	-																															ctcgcacttgaaaggcttctCccccgagtgcacgatcatgt																								novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZFP64	NM_199427	exon9	c.1315delG	p.E439fs	GCTTCTCCCCCGA	.	6	2	14	0	.	240	-	50701719	C	-	50701719	7	5	12	1	0	1	0	1	0	0	0	0	17710	864	30	0	626	0	ZFP64	20	50701719	Frame_Shift_Del	DEL	C	TCGA-W5-AA2Q-01A-11D-A417-09	15482280	50701719	12323801	150	1715											
BIRC7	79444	hgsc.bcm.edu	37	chr20	61870741	61870741	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagccgaggcccagagggcGtggtgggttcttgagccccc	5	6	16	14	2	1	2	0	1	1	1	1	3	1	2	5	4	2	1	5	4	0	2	rs373757098	alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BIRC7,right_upper_lobe,carcinoma,0,1	BIRC7	NM_139317	exon6	c.G681T	p.A227A	GAGGGCGTGGTGG	.	58	3	80	0	.	0	T	61870741	G	T	61870741	2	4	12	1	0	0	0	0	0	0	0	1	1438	1132	40	2		2	BIRC7	20	61870741	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	11169022	61870741	1154779	151	1716											
OPRL1	4987	hgsc.bcm.edu	37	chr20	62724277	62724277	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	tgtgtcggagggctcctgggGaactgccttgtcatgtacgt	5	12	15	9	2	1	0	1	0	0	0	3	2	2	2	2	4	3	2	2	4	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OPRL1,colon,carcinoma,0,1	OPRL1	NM_000913	exon2	c.G204C	p.G68G	CCTGGGGAACTGC	.	45	2	74	0	.	0	C	62724277	G	C	62724277	2	2	12	1	0	0	0	0	0	0	0	1	10934	1161	41	5		5	OPRL1	20	62724277	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	853536	62724277	301243	152	1717											
YPEL1	29799	ucsc.edu;bcgsc.ca	37	chr22	22064926	22064926	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagccacttgccttggagatGagctcgtcatgattggccag	9	10	12	10	1	1	3	1	2	0	1	2	4	1	3	3	2	3	1	3	2	1	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	YPEL1,rectum,carcinoma,-1,1	YPEL1	NM_013313	exon2	c.C108A	p.L36L	GGAGATGAGCTCG	.	42	4	76	0	.	6	T	22064926	G	T	22064926	2	4	12	1	0	0	0	0	0	0	0	1	17549	1277	45	3		3	YPEL1	22	22064926	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		22064926	29239640	153	1718											
NF2	4771	hgsc.bcm.edu	37	chr22	30054254	30054254	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgaactactttgcaatccggGtgtgttgaaacctctctgag	9	13	10	9	1	1	3	0	3	1	0	3	3	2	3	2	1	4	2	2	1	4	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	NF2_ENST00000403999,colon,carcinoma,0,13	NF2_ENST00000403999	NM_016418	exon7	c.675+1G>T	.	ATCCGGGTGTGTT	.	45	2	78	0	.	0	T	30054254	G	T	30054254	5	4	12	1	0	0	0	0	0	0	1	0	10404	1275	44	3	702	3	NF2	22	30054254	Splice_Site	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	7989328	30054254	21250312	154	1719											
BRD1	23774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	50197977	50197977	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacaaactgcttcttccgctGaatggccacctgattcgcaa	10	10	7	14	2	1	2	0	2	1	0	3	2	2	2	3	1	2	3	3	1	3	3	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014577	exon2	c.C1399A	p.Q467K	TCCGCTGAATGGC	.	37	4	54	0	.	.	T	50197977	G	T	50197977	3	4	12	1	0	0	0	0	1	0	0	0	1503	1299	45	3	1821	3	BRD1	22	50197977	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	20143723	50197977	1106589	155	1720											
SH3KBP1	30011	bcgsc.ca	37	chrX	19725065	19725065	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcattctggggcaggtaGctgaatgccacctggcaccg	7	9	13	12	2	2	1	1	1	1	0	3	1	2	1	3	4	2	4	3	4	2	2	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SH3KBP1	NM_031892	exon4	c.C324A	p.S108R	CAGGTAGCTGAAT	.	16	3	40	0	.	96	T	19725065	T	T	19725065	3	4	12	1	0	0	0	0	1	0	0	0	14310	962	34	3	1749	3	SH3KBP1	23	19725065	Missense_Mutation	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09		19725065	135545495	156	1721											
SLC7A3	84889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70149683	70149683	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctttatctttggccacctcGccagctaggacatacacgcc	8	10	8	15	2	1	0	0	0	1	0	2	1	1	1	4	2	2	2	4	2	3	5	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_032803	exon2	c.C165A	p.G55G	CACCTCGCCAGCT	.	13	13	36	0	.	.	T	70149683	G	T	70149683	2	4	12	1	0	0	0	0	0	0	0	1	14753	1074	38	2		2	SLC7A3	23	70149683	Silent	SNP	G	TCGA-W5-AA2Q-01A-11D-A417-09	50424618	70149683	85120877	157	1722											
MMEL1	79258	hgsc.bcm.edu	37	chr1	2540788	2540788	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccccactcactctggttcatGcaggagcggtacagcgtcct	7	9	10	15	2	3	0	2	0	1	0	4	1	4	1	3	3	4	3	3	3	1	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	MMEL1,colon,carcinoma,0,1	MMEL1	NM_033467	exon6	c.C525T	p.C175C	GTTCATGCAGGAG	.	27	2	45	0	.	0	A	2540788	G	A	2540788	2	1	13	1	0	0	0	0	0	0	0	1	9694	1311	46	3		3	MMEL1	1	2540788	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		2540788	246709833	1	1723											
LEPROT	54741	bcgsc.ca	37	chr1	65895660	65895660	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtagtgcctgtcgggaactgGcatatttcttcactactgga	8	13	11	9	1	2	0	1	0	1	0	3	2	2	2	1	3	3	2	1	3	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	LEPROT	NM_001198681	exon4	c.G235A	p.A79T	GAACTGGCATATT	.	84	4	85	0	.	16	A	65895660	A	A	65895660	3	1	13	1	0	0	0	0	1	0	0	0	8771	1203	42	3	218	3	LEPROT	1	65895660	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	63354872	65895660	183354961	2	1724											
EVI5	7813	hgsc.bcm.edu	37	chr1	93089878	93089878	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctttccatctcccagtagtaCgagctaagtggcgctaaagc	10	10	9	12	2	1	0	0	0	1	0	3	1	2	0	2	1	3	4	2	1	5	5	rs201423013		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	EVI5,NS,carcinoma,0,1	EVI5	NM_005665	exon14	c.G1634A	p.R545H	GTAGTACGAGCTA	.	30	2	49	1	.	0	T	93089878	C	T	93089878	3	4	13	1	0	0	0	0	1	0	0	0	5317	536	19	1	818	1	EVI5	1	93089878	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	27194218	93089878	156160743	3	1725											
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100573425	100573425	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	taaaacaagctggtccttatCcttgatttcctgttctaaaa	12	15	5	9	0	1	1	0	1	1	0	4	1	4	1	3	1	2	2	3	1	6	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_194292	exon9	c.G997T	p.D333Y	CCTTATCCTTGAT	.	30	8	39	0	.	.	A	100573425	C	A	100573425	3	1	13	1	0	0	0	0	1	0	0	0	13903	855	30	3	1012	3	SASS6	1	100573425	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	7483547	100573425	148677196	4	1726											
OLFM3	118427	broad.mit.edu	37	chr1	102269800	102269800	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgtcacatttgcctatgtGtcatcctctgtcttgatgat	7	17	7	10	0	4	2	2	2	2	0	5	2	5	2	2	0	1	0	2	0	1	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	OLFM3	NM_058170	exon6	c.C1371A	p.D457E	CTATGTGTCATCC	.	38	3	48	0	.	178	T	102269800	G	T	102269800	3	4	13	1	0	0	0	0	1	0	0	0	10902	1368	48	3	9	3	OLFM3	1	102269800	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	1696375	102269800	146980821	5	1727											
DRAM2	128338	broad.mit.edu;ucsc.edu	37	chr1	111663216	111663216	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgccatggattttgggctGcatttggtaggaaaggatgg	8	14	15	4	0	0	0	0	0	0	0	0	3	0	3	1	6	2	3	1	6	2	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	DRAM2	NM_178454	exon6	c.C439T	p.Q147X	TGGGCTGCATTTG	.	32	4	54	0	.	19	A	111663216	G	A	111663216	4	1	13	1	0	0	0	0	0	1	0	0	4780	1328	46	3	377	3	DRAM2	1	111663216	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	9393416	111663216	137587405	6	1728											
LCE4A	199834	hgsc.bcm.edu	37	chr1	152681679	152681680	+	Missense_Mutation	DNP	CC	CC	GT																															aatctcttcctgctgtggctCcagctctgggggctgtggtt																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	LCE4A,rectum,carcinoma,+1,15	LCE4A	NM_178356	exon1	c.C129T	p.S43C	TGGCTCCAGCTCT	.	36	0	32	2	.	1	GT	152681680	CC	GT	152681679	3	3	13	1	0	0	0	0	1	0	0	0	8713	855	30	5	130	5	LCE4A	1	152681679	Missense_Mutation	DNP	CC	TCGA-W5-AA2R-01A-11D-A417-09	41018463	152681679	96568942	7	1729											
CREB3L4	148327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	153946097	153946099	+	In_Frame_Del	DEL	TTC	TTC	-																															tcctcttgcttcctcccagaTtcttcttttttccctggctc																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001255979	exon9	c.898_900del	p.300_300del	CCCAGATTCTTCT	.	35	11	29	0	.	.	-	153946099	TTC	-	153946097	7	5	13	1	0	1	0	1	0	0	0	0	3882	1507	52	0	929	0	CREB3L4	1	153946097	In_Frame_Del	DEL	TTC	TCGA-W5-AA2R-01A-11D-A417-09	1264418	153946097	95304524	8	1730											
NUP210L	91181	hgsc.bcm.edu	37	chr1	153994676	153994676	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gcttggtgtctggctcaatgGcatgctctacagcaacagga	9	10	12	10	0	3	0	1	0	2	0	3	1	3	1	0	4	4	5	0	4	3	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	NUP210L,NS,carcinoma,0,1	NUP210L	NM_001159484	exon32	c.C4442T	p.A1481V	TCAATGGCATGCT	.	59	3	51	0	.	0	A	153994676	G	A	153994676	3	1	13	1	0	0	0	0	1	0	0	0	10809	1203	42	3	1260	3	NUP210L	1	153994676	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	48579	153994676	95255945	9	1731											
AQP10	89872	hgsc.bcm.edu	37	chr1	154296076	154296076	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gactccaaggttctgggcacTgggatgctgattgtggggct	6	11	16	8	0	1	1	0	1	1	0	2	3	2	2	1	5	1	4	1	5	1	2	rs1194610	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	AQP10,NS,carcinoma,0,1	AQP10	NM_080429	exon5	c.T501G	p.T167T	GGGCACTGGGATG	.	49	2	51	0	.	0	G	154296076	T	G	154296076	2	3	13	1	0	0	0	0	0	0	0	1	819	1567	55	4		4	AQP10	1	154296076	Silent	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	301400	154296076	94954545	10	1732											
KCNJ9	3765	hgsc.bcm.edu	37	chr1	160057420	160057420	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttttgaggtgcccacaccttCgtgcagtgctcgagagctgg	6	11	13	11	2	0	2	0	1	0	1	2	3	0	2	2	2	4	3	2	2	0	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	KCNJ9,rectum,carcinoma,0,1	KCNJ9	NM_004983	exon3	c.C995T	p.S332L	CACCTTCGTGCAG	.	37	2	21	0	.	0	T	160057420	C	T	160057420	3	4	13	1	0	0	0	0	1	0	0	0	8101	893	31	1	1001	1	KCNJ9	1	160057420	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	5761344	160057420	89193201	11	1733											
ATF6	22926	hgsc.bcm.edu;bcgsc.ca	37	chr1	161816251	161816251	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attttcagcatgttggaacaGgattccaggagaatgaaccc	13	10	10	8	0	1	2	1	1	0	1	2	5	2	4	2	3	3	2	2	3	3	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_007348	exon10	c.G1200A	p.Q400Q	GGAACAGGATTCC	.	61	4	40	0	.	.	A	161816251	G	A	161816251	2	1	13	1	0	0	0	0	0	0	0	1	1083	991	35	3		3	ATF6	1	161816251	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	1758831	161816251	87434370	12	1734											
IL24	11009	hgsc.bcm.edu	37	chr1	207076334	207076334	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctttagttggacgtagaagCagctctgaccaaagcccttg	10	10	10	11	1	1	2	0	1	1	1	1	3	1	3	3	1	3	4	3	1	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001185156	exon7	c.C554T	p.A185V	TAGAAGCAGCTCT	.	98	2	57	0	.	.	T	207076334	C	T	207076334	3	4	13	1	0	0	0	0	1	0	0	0	7721	710	25	3	576	3	IL24	1	207076334	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	45260083	207076334	42174287	13	1735											
PSEN2	5664	broad.mit.edu	37	chr1	227076607	227076607	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctggaacttcggggcagtggGcatggtgtgcatccactgga	7	9	16	9	1	0	0	0	0	0	0	2	2	1	2	1	6	2	3	1	6	1	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	PSEN2	NM_012486	exon8	c.G644A	p.G215D	CAGTGGGCATGGT	.	39	4	30	0	.	55	A	227076607	G	A	227076607	3	1	13	1	0	0	0	0	1	0	0	0	12700	1203	42	3	662	3	PSEN2	1	227076607	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	20000273	227076607	22174014	14	1736											
WNT9A	7483	ucsc.edu	37	chr1	228109277	228109277	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actgcctgcactccacatagCagcaccaacgcacctggcac	11	5	7	18	1	0	0	0	0	0	0	1	0	1	0	4	1	5	5	4	1	2	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	WNT9A	NM_003395	exon4	c.G1040A	p.C347Y	ACATAGCAGCACC	.	38	4	24	0	.	39	T	228109277	C	T	228109277	3	4	13	1	0	0	0	0	1	0	0	0	17458	710	25	3	61	3	WNT9A	1	228109277	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	1032670	228109277	21141344	15	1737											
OR6F1	343169	hgsc.bcm.edu	37	chr1	247875415	247875415	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gatgtacacataggagacaaAggtgatgaggcatgaactca	16	7	12	6	0	1	4	1	3	0	1	1	6	1	4	0	3	2	2	0	3	4	2	rs2282316	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	OR6F1,NS,carcinoma,0,1	OR6F1	NM_001005286	exon1	c.T643G	p.F215V	AGACAAAGGTGAT	.	45	2	29	0	.	0	C	247875415	A	C	247875415	3	2	13	1	0	0	0	0	1	0	0	0	11248	72	3	4	287	4	OR6F1	1	247875415	Missense_Mutation	SNP	A	TCGA-W5-AA2R-01A-11D-A417-09	19766138	247875415	1375206	16	1738											
ALLC	55821	hgsc.bcm.edu	37	chr2	3744995	3744995	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatgggcagttttccgattgGcacatcctggagtaataact	11	12	10	8	1	0	0	0	0	0	0	2	2	2	1	2	3	1	4	2	3	3	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	ALLC,caecum,carcinoma,0,1	ALLC	NM_018436	exon10	c.G799T	p.A267S	CGATTGGCACATC	.	66	3	85	0	.	0	T	3744995	G	T	3744995	3	4	13	1	0	0	0	0	1	0	0	0	530	1203	42	3	833	3	ALLC	2	3744995	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		3744995	239454378	17	1739											
RAD51AP2	729475	hgsc.bcm.edu	37	chr2	17698681	17698681	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttacaagtattttggctactGagtgatgggtagtcattttc	9	17	10	5	0	1	2	1	2	0	0	2	2	1	2	0	2	2	3	0	2	5	8	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	RAD51AP2,NS,lymphoid_neoplasm,0,1	RAD51AP2	NM_001099218	exon1	c.C1002A	p.L334L	GCTACTGAGTGAT	.	32	2	39	0	.	0	T	17698681	G	T	17698681	2	4	13	1	0	0	0	0	0	0	0	1	13039	1277	45	3		3	RAD51AP2	2	17698681	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	13953686	17698681	225500692	18	1740											
DTNB	1838	hgsc.bcm.edu;bcgsc.ca	37	chr2	25611194	25611194	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattggccggccgcctccatGggtgggcgatgtatgtggtg	4	10	17	10	3	0	0	0	0	0	0	1	1	1	0	4	5	0	1	4	5	1	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_021907	exon17	c.C1612A	p.H538N	CTCCATGGGTGGG	.	72	4	71	0	.	.	T	25611194	G	T	25611194	3	4	13	1	0	0	0	0	1	0	0	0	4815	1348	47	3	287	3	DTNB	2	25611194	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	7912513	25611194	217588179	19	1741											
ABHD1	84696	broad.mit.edu	37	chr2	27353427	27353427	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatacaggccgcccaacacTccccctacgttgcgctgctc	7	7	7	20	3	0	0	0	0	0	0	2	0	1	0	5	1	5	3	5	1	3	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	ABHD1	NM_032604	exon9	c.T1033C	p.S345P	CAACACTCCCCCT	.	40	3	42	0	.	18	C	27353427	T	C	27353427	3	2	13	1	0	0	0	0	1	0	0	0	73	1551	54	4	1067	4	ABHD1	2	27353427	Missense_Mutation	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	1742233	27353427	215845946	20	1742											
GALNT14	79623	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	31178586	31178586	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgatgtcagcgccccgAatccgggaccggaccagacc	8	4	14	15	5	1	1	1	0	0	1	2	5	2	3	6	3	1	0	6	3	1	0	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001253826	exon7	c.T567A	p.I189I	GCCCCGAATCCGG	.	24	5	22	0	.	.	T	31178586	A	T	31178586	2	4	13	1	0	0	0	0	0	0	0	1	6252	242	9	5		5	GALNT14	2	31178586	Silent	SNP	A	TCGA-W5-AA2R-01A-11D-A417-09	3825159	31178586	212020787	21	1743											
SPTBN1	6711	bcgsc.ca	37	chr2	54858076	54858076	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagaactaccacctcgagtgCaatgaaaccaaatcctggat	15	7	7	12	1	0	2	0	1	0	1	2	4	1	3	4	1	4	1	4	1	5	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	SPTBN1	NM_003128	exon16	c.C2892T	p.C964C	CGAGTGCAATGAA	.	10	3	18	0	.	378	T	54858076	T	T	54858076	2	4	13	1	0	0	0	0	0	0	0	1	15175	718	25	3		3	SPTBN1	2	54858076	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	23679490	54858076	188341297	22	1744											
NCK2	8440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	106471558	106471558	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtgatagccaagtgggactaCaccgcccagcaggaccagga	12	4	13	12	1	0	1	0	1	0	0	0	4	0	4	4	3	3	1	4	3	3	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001004720	exon2	c.C39T	p.Y13Y	GGACTACACCGCC	.	23	5	41	0	.	.	T	106471558	C	T	106471558	2	4	13	1	0	0	0	0	0	0	0	1	10267	489	17	3		3	NCK2	2	106471558	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	51613482	106471558	136727815	23	1745											
METTL8	79828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	172188372	172188372	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatacagaaaggactccggaGagttcctatgaagatggaag	16	7	12	6	1	0	4	0	1	0	3	2	7	2	6	2	3	1	1	2	3	6	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	.	p.S221Y	.	.	TCCGGAGAGTTCC	.	27	10	31	0	.	.	T	172188372	G	T	172188372	3	4	13	1	0	0	0	0	1	0	0	0	9557	942	33	3	581	3	METTL8	2	172188372	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	65716814	172188372	71011001	24	1746											
HTR2B	3357	hgsc.bcm.edu	37	chr2	231973540	231973540	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcttattgaagagggtgtaGaccaaaggattcactcctga	12	11	11	7	0	2	4	1	2	1	2	3	5	3	5	2	2	0	1	2	2	4	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	HTR2B,NS,carcinoma,0,1	HTR2B	NM_000867	exon4	c.C1137A	p.V379V	GGTGTAGACCAAA	.	31	2	33	0	.	0	T	231973540	G	T	231973540	2	4	13	1	0	0	0	0	0	0	0	1	7486	929	33	3		3	HTR2B	2	231973540	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	59785168	231973540	11225833	25	1747											
EXOG	9941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	38539183	38539183	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aactggaacagaggcaaggtGttacactaatcacgctttgt	13	10	10	8	1	1	1	1	0	0	1	1	2	1	2	0	3	3	3	0	3	5	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_005107	exon2	c.G227T	p.C76F	CAAGGTGTTACAC	.	40	4	84	0	.	.	T	38539183	G	T	38539183	3	4	13	1	0	0	0	0	1	0	0	0	5339	1377	48	3	233	3	EXOG	3	38539183	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		38539183	159483247	26	1748											
DNAH12	201625	hgsc.bcm.edu	37	chr3	57394104	57394104	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctacaatagatgagaagattCggaccatagtttcatcacta	15	11	7	8	1	2	3	2	1	0	3	3	5	2	4	1	1	1	1	1	1	6	6	rs377699028		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	DNAH12,caecum,carcinoma,0,1	DNAH12	NM_178504	exon40	c.G6122A	p.R2041Q	AAGATTCGGACCA	.	32	2	70	0	.	0	T	57394104	C	T	57394104	3	4	13	1	0	0	0	0	1	0	0	0	4628	884	31	1	3236	1	DNAH12	3	57394104	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	18854921	57394104	140628326	27	1749											
POU1F1	5449	hgsc.bcm.edu	37	chr3	87311274	87311274	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ataatattgctttcagtttgCatgcatttttaaagctgagc	11	17	7	6	0	1	1	1	1	0	0	1	1	1	1	0	0	5	5	0	0	4	8	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	POU1F1_ENST00000344265,caecum,carcinoma,0,2	POU1F1_ENST00000344265	NM_001122757	exon4	c.G629T	p.C210F	AGTTTGCATGCAT	.	27	2	34	0	.	0	A	87311274	C	A	87311274	3	1	13	1	0	0	0	0	1	0	0	0	12315	710	25	3	336	3	POU1F1	3	87311274	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	29917170	87311274	110711156	28	1750											
LPP	4026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	188590442	188590442	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cactttcaggaaatttgcccCgcgatgttctgtgtgcaagg	8	12	11	10	2	2	0	1	0	1	0	2	2	2	1	2	2	2	2	2	2	2	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	LPP_ENST00000312675,colon,carcinoma,0,1	LPP_ENST00000312675	NM_005578	exon10	c.C1601T	p.P534L	TTGCCCCGCGATG	.	35	15	26	0	.	0	T	188590442	C	T	188590442	3	4	13	1	0	0	0	0	1	0	0	0	8968	652	23	1	1631	1	LPP	3	188590442	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	101279168	188590442	9431988	29	1751											
HTT	3064	broad.mit.edu	37	chr4	3076651	3076652	+	Frame_Shift_Del	DEL	GC	GC	-																															cagcagcagcagcagcagcaGcagcagcagcaacagccgcc																								rs10618869	alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	HTT	NM_002111	exon1	c.99_100del	p.33_34del	GCAGCAGCAGCAG	.	7	2	11	0	.	221	-	3076652	GC	-	3076651	7	5	13	1	0	1	0	1	0	0	0	0	7501	962	34	0	101	0	HTT	4	3076651	Frame_Shift_Del	DEL	GC	TCGA-W5-AA2R-01A-11D-A417-09		3076651	188077625	30	1752	7	2									
HTT	3064	broad.mit.edu	37	chr4	3076654	3076657	+	Frame_Shift_Del	DEL	GCAG	GCAG	-																															cagcagcagcagcagcagcaGcagcagcaacagccgccacc																								rs10618869	alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	HTT	NM_002111	exon1	c.102_105del	p.34_35del	GCAGCAGCAGCAG	.	7	2	11	0	.	221	-	3076657	GCAG	-	3076654	7	5	13	1	0	1	0	1	0	0	0	0	7501	962	34	0	104	0	HTT	4	3076654	Frame_Shift_Del	DEL	GCAG	TCGA-W5-AA2R-01A-11D-A417-09	3	3076654	188077622	31	1753	7	2									
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228425	4228425	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgctcagcatctcggccagtTtctgtgggacgctggcgcgc	4	10	14	13	4	3	0	1	0	2	0	4	1	3	1	1	3	2	4	1	3	0	1	rs78657691	bycluster	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	OTOP1,caecum,carcinoma,0,1	OTOP1	NM_177998	exon1	c.A167G	p.K56R	GCCAGTTTCTGTG	.	8	2	7	2	.	0	C	4228425	T	C	4228425	3	2	13	1	0	0	0	0	1	0	0	0	11352	1841	64	4	1695	4	OTOP1	4	4228425	Missense_Mutation	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	1151771	4228425	186925851	32	1754											
SLIT2	9353	hgsc.bcm.edu	37	chr4	20530586	20530586	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caataggtacagaagattatCgatcaaaattaagtggagac	18	9	9	5	1	1	3	1	0	0	3	2	5	1	3	0	2	1	1	0	2	8	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	SLIT2,NS,carcinoma,0,1	SLIT2	NM_004787	exon16	c.C1477A	p.R493R	GATTATCGATCAA	.	39	2	40	0	.	0	A	20530586	C	A	20530586	2	1	13	1	0	0	0	0	0	0	0	1	14794	876	31	2		2	SLIT2	4	20530586	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	16302161	20530586	170623690	33	1755											
LIAS	11019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39472905	39472905	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actttaggacaatatatgcaGccaacaaggcgtcaccttaa	15	9	7	10	1	1	0	1	0	0	0	1	1	1	1	2	2	3	1	2	2	7	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_194451	exon9	c.G933C	p.Q311H	TATGCAGCCAACA	.	35	7	53	0	.	.	C	39472905	G	C	39472905	3	2	13	1	0	0	0	0	1	0	0	0	8818	962	34	5	967	5	LIAS	4	39472905	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	18942319	39472905	151681371	34	1756											
SEPT11	55752	hgsc.bcm.edu	37	chr4	77949912	77949912	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacttaaggaggcagagaaaGaggtaagccatctgtcctgc	14	7	12	8	0	1	2	0	0	1	2	2	4	2	3	2	3	3	2	2	3	4	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_018243	exon8	c.G1084T	p.E362X	GAGAAAGAGGTAA	.	70	4	48	0	.	.	T	77949912	G	T	77949912	4	4	13	1	0	0	0	0	0	1	0	0	14115	943	33	3	1114	3	SEPT11	4	77949912	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	38477007	77949912	113204364	35	1757											
TIGD2	166815	hgsc.bcm.edu	37	chr4	90035034	90035034	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtccaaatgaagaaatgttGagttcagatgatggcagaat	15	10	11	5	1	1	6	1	3	0	3	2	6	2	6	1	1	0	3	1	1	4	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	TIGD2,colon,carcinoma,0,2	TIGD2	NM_145715	exon1	c.G909T	p.L303F	AATGTTGAGTTCA	.	42	2	59	0	.	0	T	90035034	G	T	90035034	3	4	13	1	0	0	0	0	1	0	0	0	15956	1281	45	3	911	3	TIGD2	4	90035034	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	12085122	90035034	101119242	36	1758											
NDST3	9348	hgsc.bcm.edu	37	chr4	119154220	119154220	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atccttccatccttagtaacTcccccagcccaaaaaccttt	11	11	2	17	0	0	0	0	0	0	0	4	0	4	0	7	0	3	1	7	0	4	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_004784	exon9	c.T1873C	p.S625P	AGTAACTCCCCCA	.	80	4	111	0	.	.	C	119154220	T	C	119154220	3	2	13	1	0	0	0	0	1	0	0	0	10304	1551	54	4	1903	4	NDST3	4	119154220	Missense_Mutation	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	29119186	119154220	72000056	37	1759											
C7	730	hgsc.bcm.edu	37	chr5	40945430	40945430	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atcttcatcatcttcttcacGcagttatacttcacatacca	11	15	2	13	1	7	0	4	0	3	0	7	0	7	0	1	0	2	2	1	0	3	7	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	C7_ENST00000313164,NS,carcinoma,0,1	C7_ENST00000313164	NM_000587	exon7	c.G698T	p.R233L	CTTCACGCAGTTA	.	43	2	58	0	.	0	T	40945430	G	T	40945430	3	4	13	1	0	0	0	0	1	0	0	0	2391	1087	38	2	724	2	C7	5	40945430	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		40945430	139969830	38	1760											
RGS7BP	401190	hgsc.bcm.edu;bcgsc.ca	37	chr5	63802565	63802565	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gattgggagcgcaggggcagCggctccgagagcgcccacaa	9	3	17	12	4	0	1	0	0	0	1	1	4	1	2	2	4	3	3	2	4	1	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	RGS7BP,NS,adenoma,0,1	RGS7BP	NM_001029875	exon1	c.C114T	p.S38S	GGGCAGCGGCTCC	.	121	6	152	0	.	0	T	63802565	C	T	63802565	2	4	13	1	0	0	0	0	0	0	0	1	13361	767	27	1		1	RGS7BP	5	63802565	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	22857135	63802565	117112695	39	1761											
TRIM36	55521	hgsc.bcm.edu	37	chr5	114483090	114483090	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatgaattgcgcttccaGcctgtgtaattagtaagtct	10	14	9	8	1	2	1	1	1	1	0	3	1	3	1	2	0	2	3	2	0	5	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_018700	exon3	c.C300A	p.G100G	CTTCCAGCCTGTG	.	38	4	44	0	.	.	T	114483090	G	T	114483090	2	4	13	1	0	0	0	0	0	0	0	1	16571	985	34	3		3	TRIM36	5	114483090	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	50680525	114483090	66432170	40	1762											
REEP2	51308	bcgsc.ca	37	chr5	137776731	137776731	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctttggcaccctgtacccagCctattcttcctacaaggccg	7	11	7	16	1	1	0	0	0	1	0	2	0	2	0	5	2	3	2	5	2	4	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	REEP2,NS,carcinoma,-1,1	REEP2	NM_016606	exon2	c.C59T	p.A20V	ACCCAGCCTATTC	.	10	3	17	0	.	21	T	137776731	T	T	137776731	3	4	13	1	0	0	0	0	1	0	0	0	13257	739	26	3	65	3	REEP2	5	137776731	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	23293641	137776731	43138529	41	1763											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	6175067	6175067	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttttagctccgtacatcaggGcagtttctagggccaatctc	8	13	9	11	1	3	0	1	0	2	0	5	0	4	0	2	2	2	4	2	2	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_000129	exon12	c.C1493T	p.A498V	ATCAGGGCAGTTT	.	59	13	66	0	.	.	A	6175067	G	A	6175067	3	1	13	1	0	0	0	0	1	0	0	0	5368	1203	42	3	721	3	F13A1	6	6175067	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		6175067	164940000	42	1764											
GPLD1	2822	hgsc.bcm.edu	37	chr6	24448365	24448365	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	taaagtggtaaacatacctgGcaagaaatggtgatgttagg	15	10	12	4	0	0	2	0	1	0	1	0	2	0	2	1	4	2	3	1	4	8	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	GPLD1,colon,carcinoma,0,1	GPLD1	NM_001503	exon16	c.C1518T	p.C506C	TACCTGGCAAGAA	.	43	2	57	0	.	0	A	24448365	G	A	24448365	2	1	13	1	0	0	0	0	0	0	0	1	6654	1195	42	3		3	GPLD1	6	24448365	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	18273298	24448365	146666702	43	1765											
HLA-A	3105	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	29910349	29910349	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggatggccgtcatggcgcccCgaaccctcctcctgctactc	5	8	10	18	3	1	0	1	0	0	0	4	2	3	1	6	3	3	1	6	3	2	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001242758	exon1	c.C19G	p.R7G	GCGCCCCGAACCC	.	56	15	90	0	.	.	G	29910349	C	G	29910349	3	3	13	1	0	0	0	0	1	0	0	0	7236	644	23	5	21	5	HLA-A	6	29910349	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	5461984	29910349	141204718	44	1766											
XPO5	57510	hgsc.bcm.edu	37	chr6	43519110	43519110	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcagagacattagtaaggacGcaggacaggatgaggggatc	14	5	16	6	1	0	2	0	1	0	1	1	7	0	6	0	5	0	3	0	5	2	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	XPO5,NS,carcinoma,0,1	XPO5	NM_020750	exon15	c.C1653A	p.C551X	AAGGACGCAGGAC	.	80	4	83	0	.	0	T	43519110	G	T	43519110	4	4	13	1	0	0	0	0	0	1	0	0	17507	1079	38	2	2033	2	XPO5	6	43519110	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	13608761	43519110	127595957	45	1767											
COL21A1	81578	hgsc.bcm.edu	37	chr6	56035527	56035527	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaataataagattttgtccaCaccatttaaggtaactgcta	16	13	5	7	0	0	1	0	0	0	1	1	1	1	1	2	1	2	2	2	1	6	8	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_030820	exon5	c.G946A	p.V316M	TGTCCACACCATT	.	77	4	78	0	.	.	T	56035527	C	T	56035527	3	4	13	1	0	0	0	0	1	0	0	0	3703	478	17	3	2031	3	COL21A1	6	56035527	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	12516417	56035527	115079540	46	1768											
UTRN	7402	hgsc.bcm.edu	37	chr6	145051568	145051568	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aggcccgagttttcttggctGatcagccaattgaggcccct	7	11	11	12	1	2	2	1	2	1	0	2	3	2	2	4	3	1	2	4	3	1	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	UTRN,bladder,carcinoma,0,2	UTRN	NM_007124	exon53	c.G7885A	p.D2629N	TTGGCTGATCAGC	.	41	2	40	0	.	0	A	145051568	G	A	145051568	3	1	13	1	0	0	0	0	1	0	0	0	17163	1290	45	3	8095	3	UTRN	6	145051568	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	89016041	145051568	26063499	47	1769											
KDELR2	0	broad.mit.edu	37	chr7	6523689	6523691	+	In_Frame_Del	DEL	GGC	GGC	-																															gtcagccggaaaatgttcatGgcggcggcggcggtggcggt																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	KDELR2	.	.	.	.	GTTCATGGCGGCG	.	6	2	11	0	.	31	-	6523691	GGC	-	6523689	7	5	13	1	0	1	0	1	0	0	0	0	8164	1363	47	0	833	0	KDELR2	7	6523689	In_Frame_Del	DEL	GGC	TCGA-W5-AA2R-01A-11D-A417-09		6523689	152614974	48	1770											
RAMP3	10268	broad.mit.edu	37	chr7	45197468	45197470	+	In_Frame_Del	DEL	TGC	TGC	-																															gcgcccgcaacttctcccgtTgctgctgctgctctgcggta																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	RAMP3	NM_005856	exon1	c.41_43del	p.14_15del	TCCCGTTGCTGCT	.	6	2	7	0	.	32	-	45197470	TGC	-	45197468	7	5	13	1	0	1	0	1	0	0	0	0	13075	1821	63	0	43	0	RAMP3	7	45197468	In_Frame_Del	DEL	TGC	TCGA-W5-AA2R-01A-11D-A417-09	38673779	45197468	113941195	49	1771											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	86521048	86521048	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ttctactctcaccttggttgCcaaagatttgagttttccta	8	17	6	10	0	2	2	1	1	2	1	4	2	3	2	3	1	2	2	3	1	3	8	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.,2	.	NM_001142749	exon21	c.G3022C	p.A1008P	TGGTTGCCAAAGA	.	61	6	76	0	.	225	G	86521048	C	G	86521048	3	3	13	1	0	0	0	0	1	0	0	0	8266	739	26	5	75	5	KIAA1324L	7	86521048	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	41323580	86521048	72617615	50	1772											
DNAJC2	27000	hgsc.bcm.edu	37	chr7	102967063	102967063	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcacttttagaaggaactgAgttatcaaaagtaggatcta	15	13	8	5	0	3	2	2	1	1	1	3	4	3	4	0	2	1	2	0	2	8	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	Q99543-2,NS,carcinoma,0,2	Q99543-2	NM_001129887	exon5	c.T499C	p.S167P	GAACTGAGTTATC	.	46	2	49	0	.	0	G	102967063	A	G	102967063	3	3	13	1	0	0	0	0	1	0	0	0	4666	304	11	4	1418	4	DNAJC2	7	102967063	Missense_Mutation	SNP	A	TCGA-W5-AA2R-01A-11D-A417-09	16446015	102967063	56171600	51	1773											
DOCK4	9732	hgsc.bcm.edu	37	chr7	111381218	111381218	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttacttcagcagaagcttGtgaggacagtgaggaggaag	12	8	15	6	0	1	3	1	2	0	1	1	6	1	6	0	3	3	3	0	3	3	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_014705	exon46	c.C4945A	p.Q1649K	AAGCTTGTGAGGA	.	98	4	103	0	.	.	T	111381218	G	T	111381218	3	4	13	1	0	0	0	0	1	0	0	0	4716	1386	48	3	983	3	DOCK4	7	111381218	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	8414155	111381218	47757445	52	1774											
FEZF1	389549	bcgsc.ca	37	chr7	121943286	121943286	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ttgcttgcctgaaaccttttCcgcacactttgcaaacgaag	10	12	7	12	2	0	1	0	1	0	0	1	2	1	1	3	0	5	3	3	0	3	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	FEZF1	NM_001024613	exon2	c.G881A	p.G294E	CCTTTTCCGCACA	.	62	4	73	0	.	60	T	121943286	T	T	121943286	3	4	13	1	0	0	0	0	1	0	0	0	5858	855	30	3	558	3	FEZF1	7	121943286	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	10562068	121943286	37195377	53	1775											
TEX15	56154	hgsc.bcm.edu	37	chr8	30701108	30701108	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccacaggtaaatggaacaGaaagagaaaaatcaaagcaa	22	4	8	7	0	1	2	1	0	0	2	2	4	2	3	1	2	2	2	1	2	8	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_031271	exon1	c.C5426A	p.S1809Y	GGAACAGAAAGAG	.	43	3	54	0	.	.	T	30701108	G	T	30701108	3	4	13	1	0	0	0	0	1	0	0	0	15838	942	33	3	2959	3	TEX15	8	30701108	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		30701108	115662914	54	1776											
HTRA4	203100	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	38840515	38840515	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attatccagatttccctgatGtgagttctggggtttatgta	8	17	10	6	0	1	3	0	2	1	1	3	3	3	3	2	2	0	3	2	2	3	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	HTRA4	NM_153692	exon8	c.G1216T	p.V406L	CCTGATGTGAGTT	.	46	15	44	1	.	25	T	38840515	G	T	38840515	3	4	13	1	0	0	0	0	1	0	0	0	7500	1377	48	3	1246	3	HTRA4	8	38840515	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	8139407	38840515	107523507	55	1777											
ZFHX4	79776	hgsc.bcm.edu	37	chr8	77775451	77775451	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actccaccacctccaccaccTcctcctcctcctcctccttc	5	10	0	26	0	0	0	0	0	0	0	9	0	8	0	12	0	0	0	12	0	0	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	ZFHX4,colon,carcinoma,0,2	ZFHX4	NM_024721	exon11	c.T9501A	p.P3167P	ACCACCTCCTCCT	.	31	2	33	1	.	0	A	77775451	T	A	77775451	2	1	13	1	0	0	0	0	0	0	0	1	17693	1538	54	5		5	ZFHX4	8	77775451	Silent	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	38934936	77775451	68588571	56	1778											
TRPS1	7227	hgsc.bcm.edu	37	chr8	116631413	116631413	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttgaagaattgatgtcctgCagcacaccagaaaacacaga	16	7	8	10	0	0	5	0	2	0	3	1	5	1	5	2	0	3	2	2	0	4	2	rs372146914	alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	TRPS1_ENST00000395715,NS,carcinoma,0,2	TRPS1_ENST00000395715	NM_014112	exon3	c.G912A	p.L304L	GTCCTGCAGCACA	.	36	3	57	0	.	0	T	116631413	C	T	116631413	2	4	13	1	0	0	0	0	0	0	0	1	16654	697	25	3		3	TRPS1	8	116631413	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	38855962	116631413	29732609	57	1779											
TRIB1	10221	hgsc.bcm.edu	37	chr8	126445609	126445609	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaggccttacatccagctGccatcgcacagcaacattac	12	8	6	15	1	1	0	1	0	0	0	3	0	2	0	3	1	6	3	3	1	3	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	TRIB1_ENST00000311922,NS,carcinoma,0,1	TRIB1_ENST00000311922	NM_025195	exon2	c.G411T	p.L137L	CCAGCTGCCATCG	.	34	3	31	0	.	0	T	126445609	G	T	126445609	2	4	13	1	0	0	0	0	0	0	0	1	16543	1306	46	3		3	TRIB1	8	126445609	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	9814196	126445609	19918413	58	1780											
CNTNAP3	79937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	39176053	39176053	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttttacgtctgaatgcccGcgatcttccgggtgtcggaa	6	12	12	11	5	2	1	0	1	2	0	4	3	3	2	2	2	2	1	2	2	3	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	CNTNAP3,NS,carcinoma,+1,1	CNTNAP3	NM_033655	exon7	c.C964T	p.R322W	ATGCCCGCGATCT	.	125	22	180	0	.	82	A	39176053	G	A	39176053	3	1	13	1	0	0	0	0	1	0	0	0	3671	1086	38	1	2974	1	CNTNAP3	9	39176053	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		39176053	102037378	59	1781											
PTPN3	5774	hgsc.bcm.edu;bcgsc.ca	37	chr9	112216792	112216792	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttacctggtttgttcttgctGcagtgtgttgggatcaggta	5	17	13	6	0	2	0	1	0	1	0	2	1	2	1	1	3	3	6	1	3	2	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001145368	exon5	c.C352A	p.Q118K	CTTGCTGCAGTGT	.	64	4	73	0	.	.	T	112216792	G	T	112216792	3	4	13	1	0	0	0	0	1	0	0	0	12841	1328	46	3	2477	3	PTPN3	9	112216792	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	73040739	112216792	28996639	60	1782											
PPP6C	5537	hgsc.bcm.edu	37	chr9	127933372	127933372	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgaaattttacctgtccatGgatatctccacacactgtta	12	14	5	10	0	1	1	0	1	1	0	3	2	2	2	3	1	1	1	3	1	4	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	PPP6C_ENST00000451402,NS,malignant_melanoma,0,4	PPP6C_ENST00000451402	NM_001123355	exon3	c.C274T	p.H92Y	GTCCATGGATATC	.	36	2	38	0	.	0	A	127933372	G	A	127933372	3	1	13	1	0	0	0	0	1	0	0	0	12456	1348	47	3	778	3	PPP6C	9	127933372	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	15716580	127933372	13280059	61	1783											
USP20	10868	hgsc.bcm.edu	37	chr9	132642541	132642541	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaagatcgaagccgagacgCgggccgtgtgatctgctggg	9	6	17	9	5	1	4	0	1	1	3	2	6	1	4	2	2	2	1	2	2	2	0	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	USP20_ENST00000372429,NS,carcinoma,0,2	USP20_ENST00000372429	NM_001008563	exon25	c.C2734T	p.R912W	GAGACGCGGGCCG	.	40	2	60	0	.	0	T	132642541	C	T	132642541	3	4	13	1	0	0	0	0	1	0	0	0	17112	759	27	1	2824	1	USP20	9	132642541	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	4709169	132642541	8570890	62	1784											
PPYR1	5540	hgsc.bcm.edu	37	chr10	47087274	47087274	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctggggattgtgctcatctGggtcattgcctgtgtcctct	3	15	12	11	0	4	0	2	0	2	0	5	1	5	1	3	3	2	1	3	3	0	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	PPYR1,colon,carcinoma,0,2	PPYR1	NM_005972	exon3	c.G491T	p.W164L	TCATCTGGGTCAT	.	42	3	52	0	.	0	T	47087274	G	T	47087274	3	4	13	1	0	0	0	0	1	0	0	0	12465	1357	47	3	493	3	PPYR1	10	47087274	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		47087274	88447473	63	1785											
SLC6A5	9152	hgsc.bcm.edu	37	chr11	20660044	20660044	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcttgtggacacctatgctGcctcctatgcccttgtcatc	6	13	8	14	0	1	0	1	0	0	0	3	1	2	1	4	1	4	2	4	1	2	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	SLC6A5,NS,meningioma,0,1	SLC6A5	NM_004211	exon13	c.G1909A	p.A637T	TATGCTGCCTCCT	.	31	2	35	0	.	0	A	20660044	G	A	20660044	3	1	13	1	0	0	0	0	1	0	0	0	14742	1319	46	3	1959	3	SLC6A5	11	20660044	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		20660044	114346472	64	1786											
ARFGAP2	84364	hgsc.bcm.edu	37	chr11	47196591	47196591	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttctgtgaagaaatcaGagtccttcttctctggggag	8	14	12	7	0	4	3	1	1	3	2	6	4	5	4	1	2	0	1	1	2	2	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	ARFGAP2,scalp,carcinoma,0,1	ARFGAP2	NM_032389	exon5	c.C455A	p.S152Y	AAATCAGAGTCCT	.	34	2	44	0	.	0	T	47196591	G	T	47196591	3	4	13	1	0	0	0	0	1	0	0	0	847	942	33	3	1158	3	ARFGAP2	11	47196591	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	26536547	47196591	87809925	65	1787											
FNBP4	23360	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	47744682	47744682	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgcaatgagggagcaGtcactccaattgggacagaa	12	7	13	9	0	1	2	1	1	0	1	2	4	2	4	1	3	2	3	1	3	3	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_015308	exon15	c.C2651A	p.T884N	GGAGCAGTCACTC	.	33	4	42	0	.	.	T	47744682	G	T	47744682	3	4	13	1	0	0	0	0	1	0	0	0	6000	1029	36	3	414	3	FNBP4	11	47744682	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	548091	47744682	87261834	66	1788											
OR4C13	283092	hgsc.bcm.edu	37	chr11	49974531	49974531	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctacactttgatcaatcttgCctgcactaatacccacactc	11	12	3	15	0	2	1	1	1	1	0	3	1	2	1	2	0	4	1	2	0	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	OR4C13,NS,carcinoma,0,1	OR4C13	NM_001001955	exon1	c.C557A	p.A186D	ATCTTGCCTGCAC	.	60	3	51	0	.	0	A	49974531	C	A	49974531	3	1	13	1	0	0	0	0	1	0	0	0	11095	739	26	3	559	3	OR4C13	11	49974531	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	2229849	49974531	85031985	67	1789											
OR4C15	81309	hgsc.bcm.edu	37	chr11	55321858	55321858	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttaatgactatgataccaCaaattgatctgaagcaaatt	16	13	6	6	0	1	4	0	4	1	0	1	4	1	4	1	0	2	2	1	0	6	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001001920	exon1	c.C76A	p.Q26K	ATACCACAAATTG	.	34	2	40	0	.	.	A	55321858	C	A	55321858	3	1	13	1	0	0	0	0	1	0	0	0	11096	479	17	3	78	3	OR4C15	11	55321858	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	5347327	55321858	79684658	68	1790											
OR5D14	219436	hgsc.bcm.edu	37	chr11	55563503	55563503	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	atctctggggcatgtttggcCccttggtactcctttgttat	4	17	10	10	0	1	0	0	0	1	0	3	0	2	0	3	4	1	4	3	4	2	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	OR5D14,right_upper_lobe,carcinoma,0,1	OR5D14	NM_001004735	exon1	c.C472T	p.P158S	TTTGGCCCCTTGG	.	49	2	61	0	.	0	T	55563503	C	T	55563503	3	4	13	1	0	0	0	0	1	0	0	0	11202	623	22	3	474	3	OR5D14	11	55563503	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	241645	55563503	79443013	69	1791											
OSBP	5007	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	59361134	59361134	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctggtgattttgatttcctGacgcaatgtccagccatttt	7	16	9	9	1	0	3	0	3	0	0	2	3	2	3	3	1	1	2	3	1	1	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_002556	exon9	c.C1621A	p.Q541K	TTTCCTGACGCAA	.	40	4	49	0	.	.	T	59361134	G	T	59361134	3	4	13	1	0	0	0	0	1	0	0	0	11320	1299	45	3	826	3	OSBP	11	59361134	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	3797631	59361134	75645382	70	1792											
FAT3	120114	hgsc.bcm.edu	37	chr11	92087946	92087946	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggaatcgtttatgtagccGaccagttggaccgggaatcc	9	10	12	10	3	0	0	0	0	0	0	2	4	1	3	4	3	1	3	4	3	4	4	rs374699170	alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	FAT3_ENST00000409404,NS,carcinoma,0,2	FAT3_ENST00000409404	NM_001008781	exon1	c.G2668T	p.D890Y	GTAGCCGACCAGT	.	26	2	39	0	.	0	T	92087946	G	T	92087946	3	4	13	1	0	0	0	0	1	0	0	0	5724	1058	37	2	2670	2	FAT3	11	92087946	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	32726812	92087946	42918570	71	1793											
ANKK1	255239	bcgsc.ca	37	chr11	113270029	113270029	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgacggcactgcgcgcctGctcctggaccacggggcctg	5	6	15	15	4	0	1	0	1	0	0	1	3	1	2	4	4	2	2	4	4	0	0	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	ANKK1	NM_178510	exon8	c.G1338T	p.L446L	GCGCCTGCTCCTG	.	13	3	18	0	.	83	T	113270029	T	T	113270029	2	4	13	1	0	0	0	0	0	0	0	1	627	1306	46	3		3	ANKK1	11	113270029	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	21182083	113270029	21736487	72	1794											
PIK3C2G	5288	hgsc.bcm.edu	37	chr12	18443878	18443878	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttccgtatcagctcttttCtaagaccaagtttaatatac	12	16	4	9	1	3	1	1	0	2	1	4	1	4	1	2	0	2	3	2	0	6	9	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	PIK3C2G_ENST00000433979,NS,carcinoma,0,2	PIK3C2G_ENST00000433979	NM_004570	exon4	c.C851A	p.S284Y	TCTTTTCTAAGAC	.	39	2	51	0	.	0	A	18443878	C	A	18443878	3	1	13	1	0	0	0	0	1	0	0	0	11959	913	32	3	861	3	PIK3C2G	12	18443878	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		18443878	115408017	73	1795											
IAPP	3375	hgsc.bcm.edu	37	chr12	21526361	21526361	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctgaaagctacacccattGaaaggttggtaactttaaaa	16	11	7	7	0	1	2	0	2	1	0	1	2	1	2	1	2	3	3	1	2	6	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_000415	exon2	c.G76T	p.E26X	CCCATTGAAAGGT	.	65	4	90	0	.	.	T	21526361	G	T	21526361	4	4	13	1	0	0	0	0	0	1	0	0	7516	1291	45	3	78	3	IAPP	12	21526361	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	3082483	21526361	112325534	74	1796											
RFX4	5992	hgsc.bcm.edu	37	chr12	107103190	107103190	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acgacctcccagaaaacttgCgaaacatcaagttcgaatgt	15	8	7	11	3	1	1	1	0	0	1	3	4	2	1	2	0	3	1	2	0	5	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	RFX4_ENST00000357881,NS,carcinoma,0,5	RFX4_ENST00000357881	NM_001206691	exon9	c.C943T	p.R315X	AACTTGCGAAACA	.	46	2	53	0	.	0	T	107103190	C	T	107103190	4	4	13	1	0	0	0	0	0	1	0	0	13317	760	27	1	1123	1	RFX4	12	107103190	Nonsense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	85576829	107103190	26748705	75	1797											
TRPV4	59341	hgsc.bcm.edu	37	chr12	110252313	110252313	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gggtgctttcttgggcccagGcaccaccgaggactcatata	8	9	12	12	1	2	0	1	0	1	0	2	2	2	1	3	4	1	2	3	4	2	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	TRPV4,NS,carcinoma,0,1	TRPV4	NM_001177433	exon1	c.C289T	p.P97S	GCCCAGGCACCAC	.	32	2	30	0	.	0	A	110252313	G	A	110252313	3	1	13	1	0	0	0	0	1	0	0	0	16659	1203	42	3	2386	3	TRPV4	12	110252313	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	3149123	110252313	23599582	76	1798											
NOS1	4842	hgsc.bcm.edu	37	chr12	117660627	117660627	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatatgatctatcttggattGccggcacccgaagaccagga	11	9	11	10	2	2	2	0	1	2	1	2	6	2	4	3	3	1	1	3	3	3	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	NOS1,middle_lobe,carcinoma,0,1	NOS1	NM_001204218	exon27	c.C3970T	p.Q1324X	TGGATTGCCGGCA	.	36	2	58	0	.	0	A	117660627	G	A	117660627	4	1	13	1	0	0	0	0	0	1	0	0	10588	1328	46	3	452	3	NOS1	12	117660627	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	7408314	117660627	16191268	77	1799											
POLE	5426	hgsc.bcm.edu	37	chr12	133202250	133202250	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccaggtcctgcagggtgaagGccatcagcttcttctgtaga	8	10	12	11	0	3	2	1	1	2	1	4	2	4	2	3	3	2	3	3	3	2	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	POLE,colon,carcinoma,0,1	POLE	NM_006231	exon47	c.C6638A	p.A2213D	GTGAAGGCCATCA	.	25	2	27	0	.	0	T	133202250	G	T	133202250	3	4	13	1	0	0	0	0	1	0	0	0	12244	1203	42	3	234	3	POLE	12	133202250	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	15541623	133202250	649645	78	1800											
DIAPH3	81624	hgsc.bcm.edu;bcgsc.ca	37	chr13	60498918	60498918	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgatacttacaaaggttctGggcaattttagaatctaaaa	16	13	7	5	0	2	2	0	1	2	1	2	2	2	2	0	2	2	2	0	2	8	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001042517	exon18	c.C2161A	p.Q721K	GGTTCTGGGCAAT	.	76	4	71	0	.	.	T	60498918	G	T	60498918	3	4	13	1	0	0	0	0	1	0	0	0	4548	1357	47	3	1484	3	DIAPH3	13	60498918	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		60498918	54670960	79	1801											
RALGAPA1	253959	hgsc.bcm.edu	37	chr14	36094620	36094620	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agtagcttttcatttttcttCaggagatgaaagctcctcct	9	16	7	9	0	3	2	2	1	1	1	5	3	5	2	2	1	2	3	2	1	2	6	rs200815371		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	RALGAPA1_ENST00000307138,NS,carcinoma,0,2	RALGAPA1_ENST00000307138	NM_194301	exon34	c.G5358A	p.L1786L	TTTCTTCAGGAGA	.	34	2	52	0	0.001	0	T	36094620	C	T	36094620	2	4	13	1	0	0	0	0	0	0	0	1	13065	813	29	3		3	RALGAPA1	14	36094620	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		36094620	71254920	80	1802											
C14orf37	145407	hgsc.bcm.edu	37	chr14	58604812	58604812	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgttttccttggtggattccGtgaagtctcccgtactttgg	4	16	11	10	3	1	1	0	1	1	0	4	2	3	2	3	3	1	2	3	3	2	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	C14orf37,NS,adenoma,0,1	C14orf37	NM_001001872	exon2	c.C1265T	p.T422M	GATTCCGTGAAGT	.	36	3	49	0	.	0	A	58604812	G	A	58604812	3	1	13	1	0	0	0	0	1	0	0	0	1777	1145	40	1	1087	1	C14orf37	14	58604812	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	22510192	58604812	48744728	81	1803											
AHNAK2	113146	hgsc.bcm.edu	37	chr14	105412163	105412163	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggccctctgggagcttcaCgtccacctggccagcctgga	5	8	13	15	1	2	0	1	0	1	0	3	2	3	2	5	4	2	1	5	4	0	1	rs201181175	bycluster	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2_ENST00000333244	NM_138420	exon7	c.G9625C	p.V3209L	GCTTCACGTCCAC	.	36	3	32	1	.	0	G	105412163	C	G	105412163	3	3	13	1	0	0	0	0	1	0	0	0	412	536	19	5	7766	5	AHNAK2	14	105412163	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	46807351	105412163	1937377	82	1804											
AVEN	57099	hgsc.bcm.edu	37	chr15	34295319	34295319	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctttttcaatatcttgatatCgatcccagttagagacaatc	12	15	5	9	1	2	2	1	1	1	1	5	4	3	2	1	0	0	1	1	0	5	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	AVEN,rectum,carcinoma,0,1	AVEN	NM_020371	exon2	c.G359A	p.R120Q	TGATATCGATCCC	.	47	2	44	0	.	0	T	34295319	C	T	34295319	3	4	13	1	0	0	0	0	1	0	0	0	1224	884	31	1	749	1	AVEN	15	34295319	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		34295319	68236073	83	1805											
UBR1	197131	hgsc.bcm.edu	37	chr15	43322177	43322177	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttggcaatggcactgtgtgGcatgggttcaatgcaaagca	10	11	13	7	0	1	0	1	0	0	0	1	0	1	0	0	4	2	6	0	4	3	2	rs375913511		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	UBR1,NS,carcinoma,0,1	UBR1	NM_174916	exon21	c.C2344T	p.P782S	TGTGTGGCATGGG	.	29	3	47	0	.	0	A	43322177	G	A	43322177	3	1	13	1	0	0	0	0	1	0	0	0	16962	1203	42	3	3013	3	UBR1	15	43322177	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	9026858	43322177	59209215	84	1806											
TP53BP1	7158	hgsc.bcm.edu	37	chr15	43714161	43714161	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctttccctgagcttccactgCtgtgcatagctgagagactt	7	13	9	12	0	0	3	0	2	0	1	2	4	2	3	2	0	4	4	2	0	1	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	TP53BP1,colon,carcinoma,0,1	TP53BP1	NM_001141980	exon19	c.G3992A	p.S1331N	CCACTGCTGTGCA	.	42	2	38	0	.	0	T	43714161	C	T	43714161	3	4	13	1	0	0	0	0	1	0	0	0	16444	797	28	3	1981	3	TP53BP1	15	43714161	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	391984	43714161	58817231	85	1807											
SPG11	80208	hgsc.bcm.edu	37	chr15	44888451	44888451	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggcacttattgcagacttGatcgctgtccattttggagg	7	13	13	8	1	0	2	0	1	0	1	2	3	1	3	1	4	1	3	1	4	1	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	SPG11,NS,lymphoid_neoplasm,0,1	SPG11	NM_025137	exon25	c.C4264A	p.Q1422K	AGACTTGATCGCT	.	35	2	46	0	.	0	T	44888451	G	T	44888451	3	4	13	1	0	0	0	0	1	0	0	0	15097	1299	45	3	3131	3	SPG11	15	44888451	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	1174290	44888451	57642941	86	1808											
TRIM69	140691	hgsc.bcm.edu;bcgsc.ca	37	chr15	45059569	45059569	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttgactcaagtgtggctgtaCtgggctcaagaggcttcacc	8	11	12	10	0	3	2	3	1	0	1	3	2	3	2	1	3	1	4	1	3	3	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_182985	exon7	c.C1102T	p.L368L	GCTGTACTGGGCT	.	61	4	71	0	.	.	T	45059569	C	T	45059569	2	4	13	1	0	0	0	0	0	0	0	1	16603	564	20	3		3	TRIM69	15	45059569	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	171118	45059569	57471823	87	1809											
MAP2K1	5604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	66729174	66729174	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcaactctccgtacatcgtgGgcttctatggtgcgttctac	6	13	10	12	3	3	0	0	0	3	0	5	0	3	0	1	2	4	4	1	2	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_002755	exon3	c.G382C	p.G128R	ATCGTGGGCTTCT	.	34	9	45	0	.	.	C	66729174	G	C	66729174	3	2	13	1	0	0	0	0	1	0	0	0	9286	1232	43	5	392	5	MAP2K1	15	66729174	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	21669605	66729174	35802218	88	1810											
PRSS33	260429	broad.mit.edu	37	chr16	2835911	2835911	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccacggccactctccgtccCggccatcccggcccccaacg	5	4	9	23	5	1	0	0	0	1	0	4	0	3	0	8	3	1	0	8	3	1	0	rs373423015	alternate_allele	TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	PRSS33	NM_152891	exon3	c.G131T	p.R44L	CCGTCCCGGCCAT	.	38	3	46	0	.	7	A	2835911	C	A	2835911	3	1	13	1	0	0	0	0	1	0	0	0	12672	652	23	2	727	2	PRSS33	16	2835911	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		2835911	87518842	89	1811											
SEC14L5	9717	ucsc.edu	37	chr16	5046986	5046986	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggatctcctccttcagacctGgcaaccccctgccctgctgg	5	9	9	18	0	2	1	1	0	1	1	4	2	3	2	6	3	3	2	6	3	1	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	SEC14L5	NM_014692	exon8	c.G911T	p.W304L	AGACCTGGCAACC	.	27	4	16	0	.	79	T	5046986	G	T	5046986	3	4	13	1	0	0	0	0	1	0	0	0	14039	1357	47	3	937	3	SEC14L5	16	5046986	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	2211075	5046986	85307767	90	1812											
RABEP2	79874	broad.mit.edu	37	chr16	28936433	28936435	+	In_Frame_Del	DEL	GCC	GCC	-																															ccctcacgtaccagcccccgGccgccgccgccgctcatcgt																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	RABEP2	NM_024816	exon1	c.50_52del	p.17_18del	CCCCCGGCCGCCG	.	6	2	13	0	.	48	-	28936435	GCC	-	28936433	7	5	13	1	0	1	0	1	0	0	0	0	13014	1203	42	0	1709	0	RABEP2	16	28936433	In_Frame_Del	DEL	GCC	TCGA-W5-AA2R-01A-11D-A417-09	23889447	28936433	61418320	91	1813											
HSF4	3299	hgsc.bcm.edu	37	chr16	67200473	67200473	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcagctgatccagtgtCtctttgggccacttcaggcg	5	13	10	13	1	4	1	2	1	2	0	6	1	5	1	2	2	1	1	2	2	0	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	HSF4,NS,carcinoma,0,1	HSF4	NM_001538	exon8	c.C574A	p.L192I	CAGTGTCTCTTTG	.	39	2	47	0	.	0	A	67200473	C	A	67200473	3	1	13	1	0	0	0	0	1	0	0	0	7439	913	32	3	596	3	HSF4	16	67200473	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	38264040	67200473	23154280	92	1814											
BCL6B	255877	hgsc.bcm.edu	37	chr17	6928019	6928019	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	ccccagtggagacgaggcctCcagcagcagcagcagcagca	11	2	13	15	1	0	1	0	0	0	1	1	3	1	1	4	2	6	6	4	2	0	0	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.,22	.	NM_181844	exon4	c.C701G	p.S234C	AGGCCTCCAGCAG	.	23	0	34	0	.	85	G	6928019	C	G	6928019	3	3	13	1	0	0	0	0	1	0	0	0	1375	855	30	5	711	5	BCL6B	17	6928019	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		6928019	74267191	93	1815											
DNAH2	146754	ucsc.edu;bcgsc.ca	37	chr17	7661812	7661812	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcctctcttatgcacaGgattattgccatgctgtccc	7	12	8	14	0	1	0	0	0	1	0	3	1	2	1	4	2	3	2	4	2	2	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	DNAH2	NM_020877	exon13	c.2052-1G>T	.	TGCACAGGATTAT	.	19	4	22	0	.	498	T	7661812	G	T	7661812	5	4	13	1	0	0	0	0	0	0	1	0	4630	1014	35	3	2101	3	DNAH2	17	7661812	Splice_Site	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	733793	7661812	73533398	94	1816											
TMIGD1	388364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28643709	28643709	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggcatctcagctttctcatCtgaaatgaatgaagaaatta	14	13	7	7	0	3	4	2	3	3	1	5	4	3	4	0	1	1	2	0	1	5	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_206832	exon8	c.786-1G>T	.	TCTCATCTGAAAT	.	39	11	55	0	.	.	A	28643709	C	A	28643709	5	1	13	1	0	0	0	0	0	0	1	0	16290	927	32	3	7	3	TMIGD1	17	28643709	Splice_Site	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	20981897	28643709	52551501	95	1817											
LASP1	3927	hgsc.bcm.edu;broad.mit.edu	37	chr17	37071356	37071356	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggtggctacaaggagcctgCagccccagtctccatacagc	9	7	11	14	0	1	0	0	0	1	0	2	1	1	1	4	3	6	2	4	3	3	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_006148	exon6	c.C569T	p.A190V	AGCCTGCAGCCCC	.	74	4	73	0	.	.	T	37071356	C	T	37071356	3	4	13	1	0	0	0	0	1	0	0	0	8676	710	25	3	591	3	LASP1	17	37071356	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	8427647	37071356	44123854	96	1818											
C17orf53	78995	hgsc.bcm.edu;broad.mit.edu	37	chr17	42232260	42232260	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcacaggttgctgctggagaCgtgccagaatgagctgaagc	10	7	15	9	1	0	4	0	2	0	2	0	5	0	4	1	2	5	5	1	2	2	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	C17orf53,colon,carcinoma,0,1	C17orf53	NM_024032	exon7	c.C1601T	p.T534M	TGGAGACGTGCCA	.	7	3	7	0	.	0	T	42232260	C	T	42232260	3	4	13	1	0	0	0	0	1	0	0	0	1871	536	19	1	1627	1	C17orf53	17	42232260	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	5160904	42232260	38962950	97	1819											
CA10	56934	hgsc.bcm.edu	37	chr17	49825140	49825140	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgctccttgtccaggcgaagGgatacgtgtcttccagtgtt	6	13	12	10	2	1	0	0	0	1	0	4	2	4	1	3	2	2	2	3	2	2	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	CA10,NS,malignant_melanoma,0,2	CA10	NM_001082534	exon5	c.C318A	p.S106S	GCGAAGGGATACG	.	38	2	48	0	.	0	T	49825140	G	T	49825140	2	4	13	1	0	0	0	0	0	0	0	1	2529	1219	43	3		3	CA10	17	49825140	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	7592880	49825140	31370070	98	1820											
TGIF1	7050	broad.mit.edu	37	chr18	3447749	3447749	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtttggatatgacttgctcGggcaaaagttgtgcattggc	8	13	13	7	2	0	1	0	1	0	0	1	2	0	2	0	3	2	5	0	3	3	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	TGIF1	NM_173207	exon1	c.G12A	p.S4S	TTGCTCGGGCAAA	.	35	4	29	0	.	41	A	3447749	G	A	3447749	2	1	13	1	0	0	0	0	0	0	0	1	15885	1103	39	1		1	TGIF1	18	3447749	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		3447749	74629499	99	1821											
ATG4D	84971	hgsc.bcm.edu	37	chr19	10657598	10657598	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccggtaccatgggcctgccCgctggatgcccccacgctgg	4	6	14	17	3	0	0	0	0	0	0	0	1	0	1	6	4	3	3	6	4	1	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	ATG4D,caecum,carcinoma,0,2	ATG4D	NM_032885	exon4	c.C577A	p.R193S	CCTGCCCGCTGGA	.	42	2	41	0	.	0	A	10657598	C	A	10657598	3	1	13	1	0	0	0	0	1	0	0	0	1098	652	23	2	591	2	ATG4D	19	10657598	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		10657598	48471385	100	1822											
ZNF569	148266	hgsc.bcm.edu;bcgsc.ca	37	chr19	37904891	37904891	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataagtttttccttgtgactGaaggcttttctacagttact	9	18	7	7	0	1	2	0	2	1	0	2	2	2	2	1	1	2	3	1	1	4	8	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_152484	exon6	c.C669A	p.F223L	GTGACTGAAGGCT	.	49	4	68	0	.	.	T	37904891	G	T	37904891	3	4	13	1	0	0	0	0	1	0	0	0	18057	1281	45	3	1395	3	ZNF569	19	37904891	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	27247293	37904891	21224092	101	1823											
BCAM	4059	bcgsc.ca	37	chr19	45315768	45315768	+	Missense_Mutation	SNP	A	C	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cactgaggtctcccccaacaAagggacactgtctgtgatgg	10	8	11	12	0	2	2	0	2	2	0	3	3	2	3	2	3	1	0	2	3	2	0	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	BCAM	NM_001013257	exon4	c.A467C	p.K156T	CCAACAAAGGGAC	.	18	3	50	0	.	53	C	45315768	C	C	45315768	3	2	13	1	0	0	0	0	1	0	0	0	1342	14	1	4	481	4	BCAM	19	45315768	Missense_Mutation	SNP	A	TCGA-W5-AA2R-01A-11D-A417-09	7410877	45315768	13813215	102	1824											
ZNF468	90333	hgsc.bcm.edu	37	chr19	53344781	53344781	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acgatggcaggcaaggtatcGcttctgattaaagaccttgc	11	10	11	9	2	1	2	0	1	1	1	2	3	1	2	1	3	1	4	1	3	4	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001008801	exon4	c.C766T	p.R256X	GGTATCGCTTCTG	.	52	4	76	0	.	.	A	53344781	G	A	53344781	4	1	13	1	0	0	0	0	0	1	0	0	17985	1095	38	1	806	1	ZNF468	19	53344781	Nonsense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	8029013	53344781	5784202	103	1825											
KRTAP13-2	337959	hgsc.bcm.edu	37	chr21	31744209	31744209	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcgatccatagcccagggagCggcagctgctggatccaaag	10	6	13	12	2	0	0	0	0	0	0	3	3	2	2	3	3	4	3	3	3	2	1	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	KRTAP13-2,rectum,carcinoma,0,2	KRTAP13-2	NM_181621	exon1	c.G323A	p.R108H	AGGGAGCGGCAGC	.	27	2	33	0	.	0	T	31744209	C	T	31744209	3	4	13	1	0	0	0	0	1	0	0	0	8566	768	27	1	208	1	KRTAP13-2	21	31744209	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09		31744209	16385686	104	1826											
MORC3	23515	broad.mit.edu	37	chr21	37747505	37747505	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctatgattgtgcctgatcttGatcttcagcaagtgaattac	10	15	8	8	0	3	4	1	4	2	0	3	4	3	4	1	0	3	1	1	0	4	5	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	MORC3	NM_015358	exon17	c.G2731T	p.D911Y	GATCTTGATCTTC	.	65	3	64	0	.	78	T	37747505	G	T	37747505	3	4	13	1	0	0	0	0	1	0	0	0	9752	1290	45	3	2797	3	MORC3	21	37747505	Missense_Mutation	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	6003296	37747505	10382390	105	1827											
BRWD1	54014	hgsc.bcm.edu	37	chr21	40668258	40668258	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctctatgaagagcagcaaaGgcagagcccttccaaactgt	13	7	9	12	0	1	3	0	1	1	2	2	3	2	3	3	1	4	3	3	1	4	2	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.,2	.	NM_018963	exon6	c.C381A	p.A127A	AGCAAAGGCAGAG	.	85	4	97	0	.	325	T	40668258	G	T	40668258	2	4	13	1	0	0	0	0	0	0	0	1	1527	987	35	3		3	BRWD1	21	40668258	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09	2920753	40668258	7461637	106	1828											
DSCAM	1826	broad.mit.edu	37	chr21	41452122	41452122	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgatttcacttatgcgcccTgggcccactccattttgggc	6	13	9	13	1	1	1	1	1	0	0	2	1	2	1	3	2	1	0	3	2	1	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	DSCAM	NM_001271534	exon25	c.A4377G	p.P1459P	GCGCCCTGGGCCC	.	36	3	29	0	.	347	C	41452122	T	C	41452122	2	2	13	1	0	0	0	0	0	0	0	1	4794	1567	55	4		4	DSCAM	21	41452122	Silent	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	783864	41452122	6677773	107	1829											
ARSD	414	hgsc.bcm.edu	37	chrX	2825480	2825480	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctacccttgctatcacggcGtggtacaggggctcggagtc	6	9	13	13	3	1	0	1	0	0	0	3	1	1	1	2	5	3	3	2	5	3	4	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_001669	exon10	c.C1614T	p.H538H	CACGGCGTGGTAC	.	88	4	87	0	.	.	A	2825480	G	A	2825480	2	1	13	1	0	0	0	0	0	0	0	1	988	1136	40	1		1	ARSD	23	2825480	Silent	SNP	G	TCGA-W5-AA2R-01A-11D-A417-09		2825480	152445080	108	1830											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	43652720	43652720	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tatacacttgatgactgaacCcaaaggcacacgagtgatca	15	8	8	10	1	1	4	1	4	0	0	1	5	1	4	1	1	2	1	1	1	4	3	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_000898	exon8	c.G874A	p.G292S	CTGAACCCAAAGG	.	56	13	90	0	.	.	T	43652720	C	T	43652720	3	4	13	1	0	0	0	0	1	0	0	0	9276	623	22	3	720	3	MAOB	23	43652720	Missense_Mutation	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	40827240	43652720	111617840	109	1831											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350731	50350731	+	Silent	SNP	C	C	T																															tcctcttcttcttcttcttcCtcctcctcctcctcctcctg																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_020717	exon6	c.G3411A	p.E1137E	TTCTTCCTCCTCC	.	12	4	20	0	.	.	T	50350731	C	T	50350731	2	4	13	1	0	0	0	0	0	0	0	1	14351	680	24	3		3	SHROOM4	23	50350731	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	6698011	50350731	104919829	110	1832	8	2									
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350734	50350734	+	Silent	SNP	C	C	T																															tcttcttcttcttcttcctcCtcctcctcctcctcctgttg																								novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	.	NM_020717	exon6	c.G3408A	p.E1136E	TTCCTCCTCCTCC	.	11	4	18	0	.	.	T	50350734	C	T	50350734	2	4	13	1	0	0	0	0	0	0	0	1	14351	680	24	3		3	SHROOM4	23	50350734	Silent	SNP	C	TCGA-W5-AA2R-01A-11D-A417-09	3	50350734	104919826	111	1833	8	2									
AGTR2	186	broad.mit.edu;bcgsc.ca	37	chrX	115303767	115303767	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caaaagggtcctaaaaaggtTtctagcatatacatcttcaa	16	11	6	8	0	3	0	1	0	2	0	4	0	4	0	1	2	2	2	1	2	9	6	novel		TCGA-W5-AA2R-01A-11D-A417-09	TCGA-W5-AA2R-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	800521c7-a4a8-4184-aed7-573d0b99c23a	0562fd1a-2435-4350-8e46-6d7036ae748c	.	AGTR2	NM_000686	exon3	c.T234C	p.V78V	AAAGGTTTCTAGC	.	22	3	41	0	.	62	C	115303767	T	C	115303767	2	2	13	1	0	0	0	0	0	0	0	1	399	1828	64	4		4	AGTR2	23	115303767	Silent	SNP	T	TCGA-W5-AA2R-01A-11D-A417-09	64953033	115303767	39966793	112	1834											
OPRD1	4985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	29189631	29189631	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaaccccgtgctctacGctttcctcgacgagaacttc	7	10	7	17	4	2	1	1	0	1	1	5	3	3	1	4	0	4	2	4	0	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	OPRD1,colon,carcinoma,0,1	OPRD1	NM_000911	exon3	c.G955A	p.A319T	CTCTACGCTTTCC	.	14	10	46	0	.	0	A	29189631	G	A	29189631	3	1	14	1	0	0	0	0	1	0	0	0	10932	1087	38	1	965	1	OPRD1	1	29189631	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		29189631	220060990	1	1835											
CYP4A11	1579	hgsc.bcm.edu;bcgsc.ca	37	chr1	47395907	47395907	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atcctggtgggatcaggcagCagctcaaagcggagcagggt	10	6	16	9	1	2	0	2	0	0	0	3	2	3	2	1	5	4	4	1	5	1	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000778	exon12	c.G1440A	p.L480L	AGGCAGCAGCTCA	.	52	4	113	0	.	.	T	47395907	C	T	47395907	2	4	14	1	0	0	0	0	0	0	0	1	4206	697	25	3		3	CYP4A11	1	47395907	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	18206276	47395907	201854714	2	1836											
PODN	127435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53535704	53535704	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtactgagccctgaggagccCgggcctggcccagccgcggt	5	5	16	15	3	0	2	0	2	0	0	0	3	0	3	5	4	4	1	5	4	1	1	rs143779530		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_153703	exon2	c.C321T	p.P107P	GGAGCCCGGGCCT	.	81	44	102	0	0.000	.	T	53535704	C	T	53535704	2	4	14	1	0	0	0	0	0	0	0	1	12226	639	23	1		1	PODN	1	53535704	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	6139797	53535704	195714917	3	1837											
LRRC7	57554	broad.mit.edu	37	chr1	70504282	70504282	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctactgaaatacctagtccTttttctccaggcgtaccatg	9	14	6	12	1	2	1	0	1	2	0	4	1	3	1	4	1	3	1	4	1	5	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	LRRC7	NM_020794	exon19	c.T2661C	p.P887P	TAGTCCTTTTTCT	.	43	3	41	0	.	400	C	70504282	T	C	70504282	2	2	14	1	0	0	0	0	0	0	0	1	9065	1596	56	4		4	LRRC7	1	70504282	Silent	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	16968578	70504282	178746339	4	1838											
TCHH	7062	hgsc.bcm.edu	37	chr1	152082269	152082269	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ctgctgcacctcctcttcctCccgatattgcctctccagct	4	13	5	19	1	2	0	0	0	2	0	6	1	5	0	6	0	4	3	6	0	1	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TCHH,NS,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.G3424A	p.E1142K	CTTCCTCCCGATA	.	74	3	55	0	.	0	T	152082269	C	T	152082269	3	4	14	1	0	0	0	0	1	0	0	0	15760	864	30	3	2411	3	TCHH	1	152082269	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	81577987	152082269	97168352	5	1839											
S100A4	6275	hgsc.bcm.edu	37	chr1	153516381	153516381	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gctcatcagcttctggaaagCagcttcatctgtccttttct	7	15	7	12	0	6	0	3	0	3	0	7	1	7	1	1	1	3	4	1	1	1	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_002961	exon3	c.G160A	p.A54T	GGAAAGCAGCTTC	.	63	4	50	0	.	.	T	153516381	C	T	153516381	3	4	14	1	0	0	0	0	1	0	0	0	13832	710	25	3	149	3	S100A4	1	153516381	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	1434112	153516381	95734240	6	1840											
GPR161	23432	hgsc.bcm.edu	37	chr1	168073858	168073858	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaggcagcaccaacacGgacagcaggaagttggacag	17	2	12	10	1	0	0	0	0	0	0	0	3	0	3	1	4	3	4	1	4	4	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GPR161,NS,carcinoma,0,1	GPR161	NM_001267609	exon3	c.C291A	p.S97S	CAACACGGACAGC	.	47	2	38	0	.	0	T	168073858	G	T	168073858	2	4	14	1	0	0	0	0	0	0	0	1	6705	1103	39	2		2	GPR161	1	168073858	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	14557477	168073858	81176763	7	1841											
SEC16B	89866	bcgsc.ca	37	chr1	177917032	177917032	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcctgattcgacagaatcaCagccaagtgaggcctccagt	12	7	10	12	1	1	3	1	2	0	1	3	4	2	3	4	1	2	0	4	1	2	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	SEC16B	NM_033127	exon13	c.G1591A	p.V531M	GAATCACAGCCAA	.	46	4	52	0	.	92	T	177917032	T	T	177917032	3	4	14	1	0	0	0	0	1	0	0	0	14041	478	17	3	1647	3	SEC16B	1	177917032	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	9843174	177917032	71333589	8	1842											
ASPM	259266	broad.mit.edu	37	chr1	197115508	197115508	+	Silent	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccccgcagccccgcgggCggcctccgctcggtcgggct	1	4	17	19	7	0	0	0	0	0	0	3	0	1	0	6	5	1	3	6	5	0	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ASPM	NM_001206846	exon1	c.G60C	p.P20P	CGCGGGCGGCCTC	.	26	3	29	1	.	444	G	197115508	C	G	197115508	2	3	14	1	0	0	0	0	0	0	0	1	1055	755	27	5		5	ASPM	1	197115508	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	19198476	197115508	52135113	9	1843											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	240072089	240072089	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttctgacgtcaactcctcAgtgggtaagagcacggccac	10	8	10	13	2	3	2	2	1	1	1	4	2	4	2	2	2	2	2	2	2	2	2	rs200157577	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000740	exon5	c.A1338C	p.S446S	CTCCTCAGTGGGT	.	59	20	55	0	.	.	C	240072089	A	C	240072089	2	2	14	1	0	0	0	0	0	0	0	1	3400	175	7	4		4	CHRM3	1	240072089	Silent	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	42956581	240072089	9178532	10	1844											
PXDN	7837	hgsc.bcm.edu;broad.mit.edu	37	chr2	1670036	1670036	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtcaatgttgttggtcGcagagcacgcatactctccg	7	11	11	12	4	2	1	1	0	1	1	4	1	2	1	1	1	2	6	1	1	2	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PXDN,NS,carcinoma,0,1	PXDN	NM_012293	exon10	c.C1241T	p.A414V	TTGGTCGCAGAGC	.	49	3	66	0	.	0	A	1670036	G	A	1670036	3	1	14	1	0	0	0	0	1	0	0	0	12899	1087	38	1	3254	1	PXDN	2	1670036	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		1670036	241529337	11	1845											
NBAS	51594	hgsc.bcm.edu	37	chr2	15378717	15378717	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atccttagcttcttgagcttCgtcttctgagtttcttttcc	4	20	6	11	1	4	2	0	2	4	0	7	2	6	2	2	0	2	3	2	0	1	8	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015909	exon45	c.G5818A	p.E1940K	GAGCTTCGTCTTC	.	76	3	165	0	.	.	T	15378717	C	T	15378717	3	4	14	1	0	0	0	0	1	0	0	0	10234	893	31	1	1329	1	NBAS	2	15378717	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	13708681	15378717	227820656	12	1846											
ALMS1	7840	hgsc.bcm.edu	37	chr2	73800387	73800387	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccggctgattcaagcttttGgccatgaaagagtatgcttg	9	12	11	9	1	1	3	1	2	0	1	1	3	1	3	2	2	2	4	2	2	3	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_015120	exon16	c.G11380T	p.G3794C	GCTTTTGGCCATG	.	45	2	54	0	.	384	T	73800387	G	T	73800387	3	4	14	1	0	0	0	0	1	0	0	0	531	1348	47	3	11442	3	ALMS1	2	73800387	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	58421670	73800387	169398986	13	1847											
REG3G	130120	broad.mit.edu;ucsc.edu	37	chr2	79253292	79253292	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcattctcctgtgtcaggttCaaggtgagatttctctgcct	6	16	9	10	0	5	1	3	1	2	1	7	2	5	1	2	2	1	1	2	2	1	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	REG3G	NM_198448	exon2	c.C73A	p.Q25K	CAGGTTCAAGGTG	.	15	4	41	1	.	67	A	79253292	C	A	79253292	3	1	14	1	0	0	0	0	1	0	0	0	13265	827	29	3	75	3	REG3G	2	79253292	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	5452905	79253292	163946081	14	1848											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	105897081	105897081	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtcagctggttcaggtctgcGtactcatgaagaggagggtg	8	10	16	7	1	4	2	3	1	1	1	4	3	4	3	0	4	3	3	0	4	2	2	rs369009120		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TGFBRAP1,NS,carcinoma,0,1	TGFBRAP1	NM_004257	exon6	c.C1221T	p.Y407Y	GTCTGCGTACTCA	.	20	7	39	0	.	0	A	105897081	G	A	105897081	2	1	14	1	0	0	0	0	0	0	0	1	15884	1140	40	1		1	TGFBRAP1	2	105897081	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	26643789	105897081	137302292	15	1849											
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	131797699	131797699	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggaccagatgcggacCaacgtcatcaacgagatcct	14	5	10	12	3	2	2	2	0	0	2	3	5	3	4	3	2	4	1	3	2	3	0	rs138695820		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_032995	exon7	c.C858G	p.T286T	GCGGACCAACGTC	.	66	11	89	0	0.000	.	G	131797699	C	G	131797699	2	3	14	1	0	0	0	0	0	0	0	1	905	581	21	5		5	ARHGEF4	2	131797699	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	25900618	131797699	111401674	16	1850											
THSD7B	80731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	137814609	137814609	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatggagtaaatgcagactGcctcatcttaaagaaattaa	16	10	7	8	0	2	2	1	0	1	2	2	3	2	3	2	1	2	2	2	1	6	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	p.L253L	.	.	CAGACTGCCTCAT	.	64	16	84	0	.	.	A	137814609	G	A	137814609	2	1	14	1	0	0	0	0	0	0	0	1	15940	1306	46	3		3	THSD7B	2	137814609	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	6016910	137814609	105384764	17	1851											
LRP1B	53353	bcgsc.ca	37	chr2	141528562	141528562	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	catccaccattgtttagttgGcaggaattgctgcctgcata	9	13	9	10	0	0	0	0	0	0	0	1	1	1	1	3	2	3	5	3	2	3	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	LRP1B	NM_018557	exon34	c.C5514T	p.C1838C	TAGTTGGCAGGAA	.	65	4	145	0	.	1315	A	141528562	A	A	141528562	2	1	14	1	0	0	0	0	0	0	0	1	9000	1195	42	3		3	LRP1B	2	141528562	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	3713953	141528562	101670811	18	1852											
GAD1	2571	hgsc.bcm.edu	37	chr2	171702096	171702096	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttaagacaaagggcatggcgGctgtgcctaaactggtcctc	10	9	12	10	1	0	1	0	0	0	1	2	1	1	1	2	4	2	2	2	4	4	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GAD1,caecum,carcinoma,0,1	GAD1	NM_000817	exon8	c.G832A	p.A278T	ATGGCGGCTGTGC	.	64	3	81	0	.	0	A	171702096	G	A	171702096	3	1	14	1	0	0	0	0	1	0	0	0	6214	1203	42	3	899	3	GAD1	2	171702096	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	30173534	171702096	71497277	19	1853											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179528071	179528071	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gacagctgcctttggcacctCtgggactttaaagatattag	10	12	10	9	0	1	1	0	0	1	1	1	3	1	2	2	2	2	2	2	2	4	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TTN_ENST00000541862,NS,carcinoma,0,1	TTN_ENST00000541862	NM_001267550	exon173	c.G36622C	p.E12208Q	GCACCTCTGGGAC	.	305	140	454	0	.	0	G	179528071	C	G	179528071	3	3	14	1	0	0	0	0	1	0	0	0	16797	928	32	5		5	TTN	2	179528071	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	7825975	179528071	63671302	20	1854											
HECW2	57520	hgsc.bcm.edu	37	chr2	197184391	197184391	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aatcctgacgtcctctgggaGgtgaggtccttgaagacgta	9	10	13	9	2	1	4	0	3	1	1	4	5	4	5	3	3	0	1	3	3	3	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HECW2,NS,carcinoma,0,1	HECW2	NM_020760	exon9	c.C1223A	p.P408H	CTGGGAGGTGAGG	.	52	3	45	0	.	0	T	197184391	G	T	197184391	3	4	14	1	0	0	0	0	1	0	0	0	7084	1000	35	3	3579	3	HECW2	2	197184391	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	17656320	197184391	46014982	21	1855											
FN1	2335	bcgsc.ca	37	chr2	216242924	216242924	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagtggtgacaactccctgaGctggtctgcttgtcaaagtg	8	11	13	9	0	2	2	1	2	1	0	3	3	3	2	1	2	3	2	1	2	2	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	FN1	NM_212482	exon35	c.C5684A	p.A1895D	CCCTGAGCTGGTC	.	35	3	52	0	.	521	T	216242924	T	T	216242924	3	4	14	1	0	0	0	0	1	0	0	0	5995	971	34	3	1797	3	FN1	2	216242924	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	19058533	216242924	26956449	22	1856											
EAF2	55840	hgsc.bcm.edu	37	chr3	121575996	121575996	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcatctccaatagatgatatCgaaagaggtaaaatctaagt	17	10	8	6	1	2	3	0	1	2	2	4	4	2	3	1	1	0	2	1	1	7	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	EAF2,colon,carcinoma,0,1	EAF2	NM_018456	exon4	c.C477A	p.I159I	TGATATCGAAAGA	.	37	2	79	0	.	0	A	121575996	C	A	121575996	2	1	14	1	0	0	0	0	0	0	0	1	4902	874	31	2		2	EAF2	3	121575996	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		121575996	76446434	23	1857											
MYLK	4638	bcgsc.ca	37	chr3	123339082	123339082	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctagtttttctgcattgagCgggctggttggtgaccctgt	4	16	13	8	1	2	2	0	2	2	0	2	2	2	2	1	3	2	4	1	3	1	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	MYLK	NM_053025	exon32	c.G5340A	p.P1780P	ATTGAGCGGGCTG	.	49	4	101	0	.	224	T	123339082	T	T	123339082	2	4	14	1	0	0	0	0	0	0	0	1	10104	755	27	1		1	MYLK	3	123339082	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	1763086	123339082	74683348	24	1858											
ZXDC	79364	hgsc.bcm.edu	37	chr3	126160731	126160731	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caactgttctggcttgcatgGaaatggggaggactcatttt	9	13	12	7	0	2	0	1	0	1	0	2	3	2	3	0	5	2	3	0	5	2	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	ZXDC_ENST00000389709,NS,carcinoma,0,1	ZXDC_ENST00000389709	NM_025112	exon8	c.C2271A	p.F757L	TGCATGGAAATGG	.	31	2	83	0	.	0	T	126160731	G	T	126160731	3	4	14	1	0	0	0	0	1	0	0	0	18292	1165	41	3	317	3	ZXDC	3	126160731	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	2821649	126160731	71861699	25	1859											
GRK4	2868	broad.mit.edu	37	chr4	2965777	2965779	+	In_Frame_Del	DEL	CGG	CGG	-																															ctcggtctcgcagaatccgcCggcggcggcggcgccaggac																								novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	GRK4	.	.	.	.	ATCCGCCGGCGGC	.	6	2	16	0	.	72	-	2965779	CGG	-	2965777	7	5	14	1	0	1	0	1	0	0	0	0	6832	667	23	0		0	GRK4	4	2965777	In_Frame_Del	DEL	CGG	TCGA-W5-AA2T-01A-12D-A417-09		2965777	188188499	26	1860											
HS3ST1	9957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	11401504	11401504	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgtttggggccacgccatcGcggacgtcatcctggagggt	5	8	15	13	5	1	0	1	0	0	0	3	2	2	2	4	5	0	1	4	5	0	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_005114	exon2	c.C126T	p.R42R	GCCATCGCGGACG	.	24	10	33	0	.	.	A	11401504	G	A	11401504	2	1	14	1	0	0	0	0	0	0	0	1	7404	1074	38	1		1	HS3ST1	4	11401504	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	8435727	11401504	179752772	27	1861											
ZAR1	326340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	48494818	48494818	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatggctattaccactgcaaGgactgcaacatccgctggga	11	9	10	11	1	0	0	0	0	0	0	1	2	1	2	2	3	4	4	2	3	5	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_175619	exon2	c.G999T	p.K333N	CTGCAAGGACTGC	.	61	4	66	0	.	.	T	48494818	G	T	48494818	3	4	14	1	0	0	0	0	1	0	0	0	17575	991	35	3	1005	3	ZAR1	4	48494818	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	37093314	48494818	142659458	28	1862											
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	74276063	74276063	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggatgaagggaaggcttcgtCtgccaaacagagactcaagt	13	7	13	8	1	2	2	1	1	1	1	3	5	2	4	1	3	2	1	1	3	4	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000477	exon6	c.C650T	p.S217F	CTTCGTCTGCCAA	.	44	20	70	0	.	.	T	74276063	C	T	74276063	3	4	14	1	0	0	0	0	1	0	0	0	483	913	32	3	672	3	ALB	4	74276063	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	25781245	74276063	116878213	29	1863											
MARCH1	55016	hgsc.bcm.edu	37	chr4	164466875	164466875	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attttcctcctttcacttgtGgtcatctgtagtttctccca	5	19	5	12	0	4	0	2	0	2	0	7	0	6	0	3	1	0	2	3	1	1	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MARCH1_ENST00000503008,NS,carcinoma,0,2	MARCH1_ENST00000503008	NM_001166373	exon7	c.C444A	p.T148T	ACTTGTGGTCATC	.	51	3	57	0	.	0	T	164466875	G	T	164466875	2	4	14	1	0	0	0	0	0	0	0	1	9348	1335	47	3		3	MARCH1	4	164466875	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	90190812	164466875	26687401	30	1864											
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	178256872	178256872	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggaatgaaaggcttcatcatGattaatccacttgagtataa	15	12	8	6	0	2	3	2	3	0	0	3	4	3	4	1	2	0	2	1	2	5	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018248	exon3	c.G309A	p.M103I	CATCATGATTAAT	.	141	68	189	0	.	.	A	178256872	G	A	178256872	3	1	14	1	0	0	0	0	1	0	0	0	10367	1290	45	3	319	3	NEIL3	4	178256872	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	13789997	178256872	12897404	31	1865											
AHRR	57491	hgsc.bcm.edu	37	chr5	434622	434622	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacatctcgcacctggggcaCggcgtgcggggggctcagcc	5	6	16	14	4	2	0	1	0	1	0	3	0	2	0	2	6	3	3	2	6	1	1	rs370473413		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	AHRR,caecum,carcinoma,0,1	AHRR	NM_020731	exon12	c.C1833T	p.H611H	GGGGCACGGCGTG	.	18	2	24	0	.	0	T	434622	C	T	434622	2	4	14	1	0	0	0	0	0	0	0	1	414	535	19	1		1	AHRR	5	434622	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		434622	180480638	32	1866											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	5463258	5463258	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccaagattaggcaagaacttCaaacaaattctgaagattgc	17	9	7	8	0	2	4	1	1	1	3	2	4	2	4	1	1	3	1	1	1	7	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015325	exon13	c.C3811T	p.Q1271X	GAACTTCAAACAA	.	48	17	77	0	.	.	T	5463258	C	T	5463258	4	4	14	1	0	0	0	0	0	1	0	0	8244	827	29	3	3861	3	KIAA0947	5	5463258	Nonsense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	5028636	5463258	175452002	33	1867											
PRDM9	56979	hgsc.bcm.edu	37	chr5	23527220	23527220	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgggcggggctttagcTggcagtcagtcctcctcact	5	11	14	11	1	2	0	2	0	0	0	4	0	4	0	2	4	1	3	2	4	1	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PRDM9,trunk,malignant_melanoma,0,1	PRDM9	NM_020227	exon11	c.T2023C	p.W675R	TTTAGCTGGCAGT	.	64	8	86	2	.	0	C	23527220	T	C	23527220	3	2	14	1	0	0	0	0	1	0	0	0	12515	1580	55	4	2061	4	PRDM9	5	23527220	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	18063962	23527220	157388040	34	1868											
MRPS27	23107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	71519605	71519605	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tgacccctggttgtcttcatCattttgggactgctcctctg	4	16	9	12	0	4	1	2	1	2	0	5	2	5	2	3	2	1	2	3	2	0	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015084	exon10	c.G910A	p.D304N	CTTCATCATTTTG	.	46	24	69	0	.	.	T	71519605	C	T	71519605	3	4	14	1	0	0	0	0	1	0	0	0	9887	826	29	3	342	3	MRPS27	5	71519605	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	47992385	71519605	109395655	35	1869											
GCNT4	51301	hgsc.bcm.edu	37	chr5	74325091	74325091	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tctttccaatttactgtttgGgggtttcaccgtctccaaca	7	16	7	11	1	3	0	1	0	2	0	5	0	4	0	3	2	2	2	3	2	3	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GCNT4,NS,carcinoma,0,1	GCNT4	NM_016591	exon1	c.C772A	p.P258T	TGTTTGGGGGTTT	.	47	2	52	0	.	0	T	74325091	G	T	74325091	3	4	14	1	0	0	0	0	1	0	0	0	6343	1232	43	3	593	3	GCNT4	5	74325091	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	2805486	74325091	106590169	36	1870											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atattctttacttaaagggcGctggggaagttattactgcc	10	14	10	7	1	1	0	0	0	1	0	1	1	1	1	1	3	3	2	1	3	7	7	rs200576500	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_032119	exon57	c.G11761A	p.A3921T	AAGGGCGCTGGGG	.	49	21	65	0	.	.	A	90052799	G	A	90052799	3	1	14	1	0	0	0	0	1	0	0	0	6762	1087	38	1	11987	1	GPR98	5	90052799	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	15727708	90052799	90862461	37	1871											
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	95242375	95242375	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcctctgagagatggtgctgCtgctatgtgtctttcgaatt	6	15	12	8	1	2	2	0	1	2	1	3	4	2	2	1	1	3	3	1	1	2	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_012081	exon5	c.G593T	p.S198I	GTGCTGCTGCTAT	.	49	25	74	0	.	.	A	95242375	C	A	95242375	3	1	14	1	0	0	0	0	1	0	0	0	5091	797	28	3	1361	3	ELL2	5	95242375	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	5189576	95242375	85672885	38	1872											
DMXL1	1657	hgsc.bcm.edu	37	chr5	118485955	118485955	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgacctttcacagtacagtcCgacttactttggacctgagc	9	12	8	12	1	1	2	1	2	0	0	2	4	2	3	3	1	3	1	3	1	2	4	rs376786107	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	DMXL1,NS,carcinoma,0,1	DMXL1	NM_005509	exon18	c.C4433A	p.P1478Q	ACAGTCCGACTTA	.	34	2	65	0	.	0	A	118485955	C	A	118485955	3	1	14	1	0	0	0	0	1	0	0	0	4622	652	23	2	4503	2	DMXL1	5	118485955	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	23243580	118485955	62429305	39	1873											
SMAD5	4090	broad.mit.edu;ucsc.edu	37	chr5	135498966	135498966	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttttttcctcttagctgatAcgcctcctcctgcctatatg	5	18	5	13	1	1	1	0	1	1	0	4	1	4	1	5	0	3	1	5	0	4	7	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	SMAD5	.	.	.	.	GCTGATACGCCTC	.	34	12	33	0	.	30	T	135498966	A	T	135498966	3	4	14	1	0	0	0	0	1	0	0	0	14815	391	14	5	671	5	SMAD5	5	135498966	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	17013011	135498966	45416294	40	1874											
GRM6	2916	ucsc.edu	37	chr5	178413508	178413508	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcggggctgcccagggggAggaccagctcaggcgcacca	7	2	18	14	3	1	0	1	0	0	0	1	2	1	2	3	7	2	3	3	7	0	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	GRM6	NM_000843	exon8	c.T1747C	p.S583P	AGGGGGAGGACCA	.	40	6	29	3	.	149	G	178413508	A	G	178413508	3	3	14	1	0	0	0	0	1	0	0	0	6842	304	11	4	898	4	GRM6	5	178413508	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	42914542	178413508	2501752	41	1875											
PHACTR1	221692	hgsc.bcm.edu	37	chr6	13053670	13053670	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acccacaccccacccatccgCaggagaagtaagtttgccaa	13	5	7	16	1	0	1	0	0	0	1	1	2	1	1	6	1	1	3	6	1	3	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_030948	exon5	c.C324T	p.R108R	CATCCGCAGGAGA	.	100	3	127	0	.	.	T	13053670	C	T	13053670	2	4	14	1	0	0	0	0	0	0	0	1	11857	697	25	3		3	PHACTR1	6	13053670	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		13053670	158061397	42	1876											
C6orf62	81688	hgsc.bcm.edu	37	chr6	24706388	24706388	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctctggcatataaggacggaGgtgatcctctatggtgccaa	10	10	12	9	1	2	1	0	1	2	0	3	3	3	3	2	5	1	1	2	5	4	3	rs372450488	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	C6orf62,NS,carcinoma,0,2	C6orf62	NM_030939	exon5	c.C667A	p.L223I	GACGGAGGTGATC	.	33	2	51	0	.	0	T	24706388	G	T	24706388	3	4	14	1	0	0	0	0	1	0	0	0	2383	1000	35	3	26	3	C6orf62	6	24706388	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	11652718	24706388	146408679	43	1877											
MOXD1	26002	hgsc.bcm.edu	37	chr6	132645229	132645229	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aacctcagtccagaattatcTattaagcctagaacaaaagc	17	9	5	10	0	2	2	1	0	1	2	3	2	3	2	3	0	4	0	3	0	9	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MOXD1_ENST00000336749,NS,carcinoma,0,2	MOXD1_ENST00000336749	NM_015529	exon7	c.A954T	p.I318I	ATTATCTATTAAG	.	24	2	54	0	.	0	A	132645229	T	A	132645229	2	1	14	1	0	0	0	0	0	0	0	1	9769	1512	53	5		5	MOXD1	6	132645229	Silent	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	107938841	132645229	38469838	44	1878											
SHPRH	257218	hgsc.bcm.edu	37	chr6	146256253	146256253	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgcctttccactggaGaaaagtggagccagtgtatt	13	10	11	7	0	0	2	0	0	0	2	1	4	1	3	3	2	2	1	3	2	4	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SHPRH_ENST00000367505,NS,carcinoma,0,2	SHPRH_ENST00000367505	NM_173082	exon13	c.C2780A	p.S927Y	ACTGGAGAAAAGT	.	26	2	61	0	.	0	T	146256253	G	T	146256253	3	4	14	1	0	0	0	0	1	0	0	0	14346	942	33	3	2387	3	SHPRH	6	146256253	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	13611024	146256253	24858814	45	1879											
AKAP12	9590	hgsc.bcm.edu	37	chr6	151674611	151674611	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtcactagttgaaccGaaagaagatgaaaaaggtga	19	6	12	4	1	1	6	1	3	0	3	1	8	1	6	1	1	1	1	1	1	7	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	AKAP12,face,carcinoma,+1,1	AKAP12	NM_005100	exon4	c.G5085T	p.P1695P	TGAACCGAAAGAA	.	30	2	58	0	.	+1	T	151674611	G	T	151674611	2	4	14	1	0	0	0	0	0	0	0	1	445	1045	37	2		2	AKAP12	6	151674611	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	5418358	151674611	19440456	46	1880											
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167570387	167570387	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	taggagtctctggggttgaaAtctgggggctctgctgcctg	5	12	16	8	0	3	1	0	1	3	0	4	2	3	2	1	5	2	3	1	5	2	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_005299	exon1	c.T933G	p.D311E	GTTGAAATCTGGG	.	21	16	50	0	.	.	C	167570387	A	C	167570387	3	2	14	1	0	0	0	0	1	0	0	0	6727	98	4	4	29	4	GPR31	6	167570387	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	15895776	167570387	3544680	47	1881											
NPVF	64111	hgsc.bcm.edu	37	chr7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcaggtgtactcatcttaaTaacattttttggtccccaat	10	16	6	9	0	2	0	1	0	1	0	3	0	3	0	2	2	3	2	2	2	4	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NPVF,NS,carcinoma,+2,9	NPVF	NM_022150	exon2	c.A211G	p.I71V	TCTTAATAACATT	.	50	3	101	1	.	+2	C	25266573	T	C	25266573	3	2	14	1	0	0	0	0	1	0	0	0	10653	1406	49	4	387	4	NPVF	7	25266573	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09		25266573	133872090	48	1882											
NFE2L3	9603	hgsc.bcm.edu	37	chr7	26224872	26224872	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaaccttttccgtggcctggGaagtcacagaagataaggag	12	8	13	8	1	1	2	1	0	0	2	2	5	2	4	3	3	1	0	3	3	4	3	rs373484767	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_004289	exon4	c.G1554T	p.G518G	GCCTGGGAAGTCA	.	73	4	79	0	.	.	T	26224872	G	T	26224872	2	4	14	1	0	0	0	0	0	0	0	1	10416	1161	41	3		3	NFE2L3	7	26224872	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	958299	26224872	132913791	49	1883											
C7orf10	79783	bcgsc.ca	37	chr7	40277290	40277290	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gttatgatgctgttgcctcgGctgtttctggtctgatgcac	4	16	12	9	1	2	2	0	2	2	0	3	2	2	2	1	2	3	6	1	2	1	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	C7orf10	NM_001193313	exon7	c.G562A	p.A188T	GCCTCGGCTGTTT	.	67	4	86	0	.	99	A	40277290	A	A	40277290	3	1	14	1	0	0	0	0	1	0	0	0	2392	1203	42	3	477	3	C7orf10	7	40277290	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	14052418	40277290	118861373	50	1884											
SAMD9	54809	hgsc.bcm.edu	37	chr7	92733180	92733180	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtgcatagccaaggtaGttcccccacagcctggatga	11	8	11	11	0	0	1	0	1	0	0	1	3	1	2	4	2	3	3	4	2	4	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SAMD9,NS,carcinoma,0,1	SAMD9	NM_001193307	exon2	c.C2231A	p.T744N	AAGGTAGTTCCCC	.	60	3	125	0	.	0	T	92733180	G	T	92733180	3	4	14	1	0	0	0	0	1	0	0	0	13878	1029	36	3	2542	3	SAMD9	7	92733180	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	52455890	92733180	66405483	51	1885											
DLD	1738	hgsc.bcm.edu;bcgsc.ca	37	chr7	107557754	107557754	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgtagttgctggtccaatGctggctcacaaagcagagga	11	9	13	8	0	1	1	1	0	0	1	2	3	2	2	1	3	3	6	1	3	3	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000108	exon11	c.G1083A	p.M361I	TCCAATGCTGGCT	.	40	4	54	0	.	.	A	107557754	G	A	107557754	3	1	14	1	0	0	0	0	1	0	0	0	4579	1319	46	3	1125	3	DLD	7	107557754	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	14824574	107557754	51580909	52	1886											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	136699781	136699781	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccgccacctccagaccGtcaacaattactttttattc	11	12	3	15	2	2	1	2	0	0	1	4	1	3	1	5	0	3	0	5	0	5	5	rs143842239	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	CHRM2,NS,adenocarcinoma,0,2	CHRM2	NM_001006632	exon3	c.G169A	p.V57I	CAGACCGTCAACA	.	32	9	65	0	0.000	0	A	136699781	G	A	136699781	3	1	14	1	0	0	0	0	1	0	0	0	3399	1145	40	1	171	1	CHRM2	7	136699781	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	29142027	136699781	22438882	53	1887											
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	67039583	67039583	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	agagaagcaactcatctgtcCcatctgcttagagatgttca	12	11	8	10	0	4	2	2	0	2	2	5	4	5	2	1	0	3	3	1	0	3	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_184086	exon1	c.C80T	p.P27L	TCTGTCCCATCTG	.	53	18	49	0	.	.	T	67039583	C	T	67039583	3	4	14	1	0	0	0	0	1	0	0	0	16590	623	22	3	82	3	TRIM55	8	67039583	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		67039583	79324439	54	1888											
PREX2	80243	hgsc.bcm.edu	37	chr8	68984774	68984774	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctacaaatctgtggtcatggCcaacaaactgatagactggt	13	10	9	9	0	2	2	1	1	1	1	2	2	2	2	1	3	3	0	1	3	5	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_025170	exon14	c.C1538T	p.A513V	TCATGGCCAACAA	.	98	4	117	0	.	.	T	68984774	C	T	68984774	3	4	14	1	0	0	0	0	1	0	0	0	12529	739	26	3	1592	3	PREX2	8	68984774	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	1945191	68984774	77379248	55	1889											
NCOA2	10499	hgsc.bcm.edu	37	chr8	71068239	71068239	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tcaaagctcatctcctccttCtcagttttcattgctattaa	9	17	3	12	0	5	0	4	0	2	0	8	0	6	0	2	0	2	3	2	0	3	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NCOA2,NS,carcinoma,0,1	NCOA2	NM_006540	exon11	c.G2361A	p.E787E	CTCCTTCTCAGTT	.	47	2	54	0	.	0	T	71068239	C	T	71068239	2	4	14	1	0	0	0	0	0	0	0	1	10276	912	32	3		3	NCOA2	8	71068239	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	2083465	71068239	75295783	56	1890											
ZFHX4	79776	bcgsc.ca	37	chr8	77761880	77761880	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acgtcctcagcaacaaaatgCatctccaactgcatctgacg	13	8	6	14	2	3	1	1	1	2	0	5	1	4	1	2	0	5	3	2	0	4	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ZFHX4	NM_024721	exon8	c.C3778T	p.H1260Y	AAAATGCATCTCC	.	39	4	43	0	.	878	T	77761880	T	T	77761880	3	4	14	1	0	0	0	0	1	0	0	0	17693	710	25	3	3804	3	ZFHX4	8	77761880	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	6693641	77761880	68602142	57	1891											
LRRCC1	85444	hgsc.bcm.edu	37	chr8	86022348	86022348	+	Splice_Site	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttattttactttttttttttAggacttgaagaactaattaa	12	22	4	3	0	0	2	0	1	0	1	0	3	0	3	0	1	2	0	0	1	7	12	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	LRRCC1_ENST00000414626,NS,carcinoma,0,2	LRRCC1_ENST00000414626	NM_033402	exon3	c.311-2A>T	.	TTTTTTAGGACTT	.	42	2	33	0	.	0	T	86022348	A	T	86022348	5	4	14	1	0	0	0	0	0	0	1	0	9071	434	15	5	319	5	LRRCC1	8	86022348	Splice_Site	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	8260468	86022348	60341674	58	1892											
ENPP2	5168	hgsc.bcm.edu;bcgsc.ca	37	chr8	120602791	120602791	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaattcttcctagagttccAggcactaaagtaatatcatc	13	12	6	10	1	2	1	1	0	1	1	5	2	4	1	2	1	0	3	2	1	6	7	rs372866542	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_006209	exon14	c.T1317C	p.P439P	AGTTCCAGGCACT	.	71	4	93	0	.	.	G	120602791	A	G	120602791	2	3	14	1	0	0	0	0	0	0	0	1	5158	175	7	4		4	ENPP2	8	120602791	Silent	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	34580443	120602791	25761231	59	1893											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	16419547	16419547	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tatcttcaccaaaaattcatCgcggaggtccttgctaaggg	11	11	9	10	2	3	0	2	0	1	0	5	1	4	1	2	3	1	1	2	3	4	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	BNC2,NS,carcinoma,0,1	BNC2	NM_017637	exon7	c.G2740A	p.D914N	ATTCATCGCGGAG	.	28	25	83	0	.	0	T	16419547	C	T	16419547	3	4	14	1	0	0	0	0	1	0	0	0	1474	884	31	1	563	1	BNC2	9	16419547	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		16419547	124793884	60	1894											
TAF1L	138474	hgsc.bcm.edu	37	chr9	32633786	32633786	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tccaaaggtgccccgaagacCctgttgcttggggaaataat	11	9	11	10	1	0	1	0	0	0	1	1	3	1	2	4	3	2	2	4	3	4	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_153809	exon1	c.G1792T	p.G598C	GAAGACCCTGTTG	.	26	2	62	0	.	382	A	32633786	C	A	32633786	3	1	14	1	0	0	0	0	1	0	0	0	15580	623	22	3	3692	3	TAF1L	9	32633786	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	16214239	32633786	108579645	61	1895											
CA9	768	ucsc.edu;bcgsc.ca	37	chr9	35676345	35676345	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ccagagttgacgaggccttgGggcgcccgggaggcctggcc	5	5	18	13	3	0	2	0	1	0	1	0	4	0	3	5	6	0	1	5	6	0	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CA9	NM_001216	exon5	c.G799T	p.G267W	GCCTTGGGGCGCC	.	27	4	58	0	.	48	T	35676345	G	T	35676345	3	4	14	1	0	0	0	0	1	0	0	0	2542	1232	43	3	817	3	CA9	9	35676345	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	3042559	35676345	105537086	62	1896											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137710726	137710726	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaggatccccaggcccGgacggtccccccggccccat	5	4	10	22	3	0	0	0	0	0	0	3	2	3	2	9	5	0	0	9	5	0	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000093	exon56	c.G4371A	p.P1457P	AGGCCCGGACGGT	.	15	11	80	0	.	.	A	137710726	G	A	137710726	2	1	14	1	0	0	0	0	0	0	0	1	3719	1103	39	1		1	COL5A1	9	137710726	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	102034381	137710726	3502705	63	1897											
NEBL	10529	hgsc.bcm.edu;bcgsc.ca	37	chr10	21169808	21169808	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatctgagaatcctttggcaGcatcatgtttctgcttgtag	9	15	9	8	0	3	1	1	1	2	1	4	2	4	1	1	1	2	5	1	1	3	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_006393	exon5	c.C395A	p.A132D	TTGGCAGCATCAT	.	62	4	127	0	.	.	T	21169808	G	T	21169808	3	4	14	1	0	0	0	0	1	0	0	0	10350	971	34	3	2745	3	NEBL	10	21169808	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		21169808	114364939	64	1898											
LGI1	9211	hgsc.bcm.edu	37	chr10	95557554	95557554	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catgtcatagttgacttaagCgcatgagacaccaaattctg	13	11	8	9	1	2	2	1	2	1	1	2	3	2	2	1	0	1	2	1	0	3	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	LGI1,NS,carcinoma,0,1	LGI1	NM_005097	exon8	c.C1668T	p.S556S	CTTAAGCGCATGA	.	45	2	50	0	.	0	T	95557554	C	T	95557554	2	4	14	1	0	0	0	0	0	0	0	1	8791	767	27	1		1	LGI1	10	95557554	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	74387746	95557554	39977193	65	1899											
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	106074385	106074385	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cggttgccgatgaagaagtgGtggagcttcttctggagcaa	9	10	15	7	2	2	2	0	1	2	1	2	5	2	4	1	4	3	3	1	4	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001272013	exon2	c.C1425T	p.H475H	GAAGTGGTGGAGC	.	15	8	21	0	.	.	A	106074385	G	A	106074385	2	1	14	1	0	0	0	0	0	0	0	1	7967	1252	44	3		3	ITPRIP	10	106074385	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	10516831	106074385	29460362	66	1900											
SCUBE2	57758	hgsc.bcm.edu	37	chr11	9101052	9101052	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agctcatttccacattcatcGatgtctgaggaataaaacag	14	11	7	9	1	3	1	2	1	1	0	5	3	4	2	1	1	2	1	1	1	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SCUBE2_ENST00000457346,NS,carcinoma,0,2	SCUBE2_ENST00000457346	NM_001170690	exon3	c.C261T	p.I87I	TTCATCGATGTCT	.	34	2	65	1	.	0	A	9101052	G	A	9101052	2	1	14	1	0	0	0	0	0	0	0	1	13999	1048	37	1		1	SCUBE2	11	9101052	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		9101052	125905464	67	1901											
MED19	219541	broad.mit.edu	37	chr11	57472100	57472100	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctccatacggaacttaactGggtttacctatggaagttca	11	12	9	9	1	1	0	1	0	0	0	2	2	2	2	2	3	4	3	2	3	6	6	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	MED19	NM_153450	exon4	c.C579A	p.P193P	TTAACTGGGTTTA	.	47	4	79	0	.	15	T	57472100	G	T	57472100	2	4	14	1	0	0	0	0	0	0	0	1	9487	1335	47	3		3	MED19	11	57472100	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	48371048	57472100	77534416	68	1902											
EML3	256364	hgsc.bcm.edu	37	chr11	62378802	62378802	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcacgtgggtggcagtcctGggggggctgcaagactgctg	5	8	19	9	1	0	1	0	0	0	1	1	1	1	1	1	5	3	5	1	5	1	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_153265	exon3	c.C209A	p.P70Q	AGTCCTGGGGGGG	.	70	3	98	0	.	61	T	62378802	G	T	62378802	3	4	14	1	0	0	0	0	1	0	0	0	5126	1348	47	3	2561	3	EML3	11	62378802	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	4906702	62378802	72627714	69	1903											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62490357	62490357	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctctgtgcagccttctttcaTtgggagattctgggttacct	5	16	10	10	0	4	1	1	0	3	1	4	2	4	1	2	2	3	2	2	2	1	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001079559	exon5	c.A910G	p.M304V	CTTTCATTGGGAG	.	45	21	53	0	.	.	C	62490357	T	C	62490357	3	2	14	1	0	0	0	0	1	0	0	0	7316	1493	52	4	1373	4	HNRNPUL2	11	62490357	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	111555	62490357	72516159	70	1904											
CLNS1A	1207	ucsc.edu	37	chr11	77336767	77336767	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagaacactcacacgctGatttatcactaggcacaaat	14	10	6	11	1	2	2	2	1	0	1	2	2	2	2	0	1	1	3	0	1	5	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CLNS1A	NM_001293	exon3	c.C359A	p.S120X	CACGCTGATTTAT	.	25	4	49	0	.	18	T	77336767	G	T	77336767	4	4	14	1	0	0	0	0	0	1	0	0	3571	1294	45	3	370	3	CLNS1A	11	77336767	Nonsense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	14846410	77336767	57669749	71	1905											
USP35	57558	hgsc.bcm.edu	37	chr11	77921399	77921399	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtctccatccccctgctgcTccgcctgccactggctggtg	2	10	10	19	2	1	0	0	0	1	0	4	0	3	0	6	2	3	3	6	2	0	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,2	.	NM_020798	exon10	c.T2498C	p.L833P	TGCTGCTCCGCCT	.	312	29	21	2	.	179	C	77921399	T	C	77921399	3	2	14	1	0	0	0	0	1	0	0	0	17126	1551	54	4	2532	4	USP35	11	77921399	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	584632	77921399	57085117	72	1906											
KDELC2	143888	hgsc.bcm.edu	37	chr11	108361840	108361840	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggtttagggacatgtatcCggaccaactctttaggtgaa	12	11	11	7	1	1	1	0	1	1	0	2	3	2	3	2	4	1	2	2	4	6	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	KDELC2,rectum,carcinoma,0,1	KDELC2	NM_153705	exon2	c.G257A	p.R86Q	TGTATCCGGACCA	.	29	2	66	0	.	0	T	108361840	C	T	108361840	3	4	14	1	0	0	0	0	1	0	0	0	8162	652	23	1	1294	1	KDELC2	11	108361840	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	30440441	108361840	26644676	73	1907											
HYOU1	10525	hgsc.bcm.edu	37	chr11	118926263	118926263	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagggtcacgatcaccGgtgttttcctccgagattcc	6	13	9	13	3	3	1	3	0	0	1	6	3	6	1	4	2	0	1	4	2	0	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HYOU1,scalp,carcinoma,0,1	HYOU1	NM_006389	exon4	c.C206G	p.P69R	ATCACCGGTGTTT	.	12	2	16	0	.	0	C	118926263	G	C	118926263	3	2	14	1	0	0	0	0	1	0	0	0	7514	1116	39	5	2885	5	HYOU1	11	118926263	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	10564423	118926263	16080253	74	1908											
BICD1	636	hgsc.bcm.edu	37	chr12	32481467	32481467	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagatcgccacattgagggCggtgttgaaagccaacaagc	12	6	13	10	2	0	3	0	2	0	1	1	3	0	3	2	2	3	2	2	2	3	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	BICD1,colon,carcinoma,0,1	BICD1	NM_001714	exon5	c.C2078T	p.A693V	TGAGGGCGGTGTT	.	21	2	36	0	.	0	T	32481467	C	T	32481467	3	4	14	1	0	0	0	0	1	0	0	0	1427	768	27	1	2096	1	BICD1	12	32481467	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		32481467	101370428	75	1909											
MED13L	23389	hgsc.bcm.edu	37	chr12	116399131	116399131	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	accacaaagtggacgggaagGcaggaagtacggtcctgggt	12	5	16	8	2	0	0	0	0	0	0	1	3	1	3	2	6	1	2	2	6	4	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015335	exon31	c.C6573A	p.C2191X	GGGAAGGCAGGAA	.	50	4	69	0	.	.	T	116399131	G	T	116399131	4	4	14	1	0	0	0	0	0	1	0	0	9481	1195	42	3	63	3	MED13L	12	116399131	Nonsense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	83917664	116399131	17452764	76	1910											
PLA2G1B	5319	hgsc.bcm.edu	37	chr12	120765537	120765537	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcctacctgtgagcagcacaGctagcacaaggagtttcatc	11	8	10	12	0	1	1	1	1	0	0	2	2	1	2	2	1	5	5	2	1	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PLA2G1B,caecum,carcinoma,0,1	PLA2G1B	NM_000928	exon1	c.C20A	p.A7D	AGCACAGCTAGCA	.	34	2	54	0	.	0	T	120765537	G	T	120765537	3	4	14	1	0	0	0	0	1	0	0	0	12042	971	34	3	442	3	PLA2G1B	12	120765537	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	4366406	120765537	13086358	77	1911											
EP400	57634	hgsc.bcm.edu	37	chr12	132514441	132514441	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gagctgaggctggtgcagttCgactcaggtatgcggcagtt	7	10	16	8	2	1	1	1	1	0	0	2	3	1	1	0	4	3	7	0	4	1	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015409	exon28	c.C5577T	p.F1859F	GCAGTTCGACTCA	.	51	4	86	0	.	.	T	132514441	C	T	132514441	2	4	14	1	0	0	0	0	0	0	0	1	5177	883	31	1		1	EP400	12	132514441	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	11748904	132514441	1337454	78	1912											
RBM25	58517	hgsc.bcm.edu	37	chr14	73538375	73538375	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttccacctcatttgaatcGccctcccatgggaatcccag	8	12	6	15	1	1	1	1	1	0	0	5	2	4	2	5	1	0	0	5	1	2	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	RBM25,NS,carcinoma,0,2	RBM25	NM_021239	exon2	c.G26T	p.R9L	TGAATCGCCCTCC	.	40	2	91	0	.	0	T	73538375	G	T	73538375	3	4	14	1	0	0	0	0	1	0	0	0	13177	1087	38	2	28	2	RBM25	14	73538375	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		73538375	33811165	79	1913											
USP8	9101	ucsc.edu	37	chr15	50785054	50785054	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atattgcagtgcctatgtaaCgctccacatttggctgatta	10	14	8	9	1	0	1	0	1	0	0	1	1	1	1	2	1	3	4	2	1	4	6	rs199814360		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	USP8	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	36	4	56	4	.	90	T	50785054	C	T	50785054	2	4	14	1	0	0	0	0	0	0	0	1	17149	535	19	1		1	USP8	15	50785054	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		50785054	51746338	80	1914											
ISL2	64843	hgsc.bcm.edu	37	chr15	76632660	76632661	+	Frame_Shift_Ins	INS	-	-	A																															cgttgcgcccgcacgtgcacINSaagcagacggagaagacgac																								novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_145805	exon4	c.555_556insA	p.H185fs	CGTGCACAAGCAG	.	39	15	76	0	.	.	A	76632661	-	A	76632660	7	5	14	1	0	1	1	0	0	0	0	0	7901	477	17	0	569	0	ISL2	15	76632660	Frame_Shift_Ins	INS	-	TCGA-W5-AA2T-01A-12D-A417-09	25847606	76632660	25898732	81	1915											
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	86311759	86311759	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgacgccatcccgcaaggggGccaccatcatccacttgttg	8	8	10	15	2	1	1	1	1	0	0	3	1	3	1	5	2	0	2	5	2	1	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_022480	exon2	c.C1283T	p.A428V	AAGGGGGCCACCA	.	22	10	39	0	.	.	A	86311759	G	A	86311759	3	1	14	1	0	0	0	0	1	0	0	0	8423	1203	42	3	490	3	KLHL25	15	86311759	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	9679099	86311759	16219633	82	1916											
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	89424838	89424838	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catttgacacgcacacgccgCggggagaccagggccggctc	8	4	14	15	5	0	2	0	1	0	1	1	3	0	2	3	4	0	2	3	4	0	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HAPLN3,colon,carcinoma,0,1	HAPLN3	NM_178232	exon3	c.G243A	p.P81P	ACGCCGCGGGGAG	.	17	9	43	0	.	0	T	89424838	C	T	89424838	2	4	14	1	0	0	0	0	0	0	0	1	6997	755	27	1		1	HAPLN3	15	89424838	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	3113079	89424838	13106554	83	1917											
COQ9	57017	hgsc.bcm.edu	37	chr16	57486813	57486813	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtttgtgcccgcccacGggtggacagcagaggcgatt	7	9	15	10	3	0	2	0	1	0	1	0	4	0	3	2	3	2	2	2	3	0	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	COQ9,NS,carcinoma,0,1	COQ9	NM_020312	exon3	c.G343T	p.G115W	GCCCACGGGTGGA	.	33	2	29	0	.	0	T	57486813	G	T	57486813	3	4	14	1	0	0	0	0	1	0	0	0	3774	1116	39	2	353	2	COQ9	16	57486813	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		57486813	32867940	84	1918											
VMO1	284013	hgsc.bcm.edu	37	chr17	4688807	4688807	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccagctcagcccaggcccCtgcagttcctcgccgtctga	5	7	9	20	2	2	1	1	1	1	0	4	1	3	1	7	1	3	3	7	1	0	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	VMO1,NS,carcinoma,0,1	VMO1	NM_182566	exon3	c.G459T	p.Q153H	AGGCCCCTGCAGT	.	52	3	55	0	.	0	A	4688807	C	A	4688807	3	1	14	1	0	0	0	0	1	0	0	0	17237	680	24	3	153	3	VMO1	17	4688807	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		4688807	76506403	85	1919											
DNAH9	1770	hgsc.bcm.edu;bcgsc.ca	37	chr17	11774974	11774974	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgcagaacttcaaacaGcaggaaaggacgttatgtgg	13	7	13	8	2	1	1	1	0	0	1	1	3	1	3	1	3	4	3	1	3	4	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001372	exon52	c.G10113T	p.Q3371H	CAAACAGCAGGAA	.	70	4	86	0	.	.	T	11774974	G	T	11774974	3	4	14	1	0	0	0	0	1	0	0	0	4635	962	34	3	10319	3	DNAH9	17	11774974	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	7086167	11774974	69420236	86	1920											
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33749505	33749505	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gttctatcaaaaaaaaccccGgccaaggccttcatgttatt	13	11	6	11	1	3	0	2	0	1	0	3	0	3	0	4	2	1	2	4	2	7	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018042	exon2	c.C543T	p.A181A	AACCCCGGCCAAG	.	80	21	72	0	.	.	A	33749505	G	A	33749505	2	1	14	1	0	0	0	0	0	0	0	1	14789	1103	39	1		1	SLFN12	17	33749505	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	21974531	33749505	47445705	87	1921											
HCN2	610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	613928	613928	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgccgcctctattcgctgagCgtggacaacttcaacgaggt	8	10	11	12	4	2	1	1	1	1	0	3	3	2	2	2	2	4	1	2	2	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001194	exon7	c.C1902T	p.S634S	GCTGAGCGTGGAC	.	35	22	38	0	.	.	T	613928	C	T	613928	2	4	14	1	0	0	0	0	0	0	0	1	7038	767	27	1		1	HCN2	19	613928	Silent	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09		613928	58515055	88	1922											
RYR1	6261	broad.mit.edu	37	chr19	38995497	38995497	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctcatctaaggcagagaaaaAggccacagtggatgctgaag	15	6	12	8	0	2	2	1	1	1	1	2	4	2	3	1	3	1	2	1	3	4	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	RYR1	NM_001042723	exon51	c.A8177G	p.K2726R	AGAAAAAGGCCAC	.	44	3	70	0	.	708	G	38995497	A	G	38995497	3	3	14	1	0	0	0	0	1	0	0	0	13820	72	3	4	8379	4	RYR1	19	38995497	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	38381569	38995497	20133486	89	1923											
C19orf47	126526	hgsc.bcm.edu;bcgsc.ca	37	chr19	40847787	40847787	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctccctggccctgacactgCtccctggagcctgaaagaga	8	8	10	15	0	1	3	0	2	1	1	3	5	2	4	4	2	2	1	4	2	1	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001256440	exon2	c.G89A	p.S30N	ACACTGCTCCCTG	.	53	4	47	0	.	.	T	40847787	C	T	40847787	3	4	14	1	0	0	0	0	1	0	0	0	1942	812	28	3		3	C19orf47	19	40847787	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	1852290	40847787	18281196	90	1924											
ADCK4	79934	hgsc.bcm.edu	37	chr19	41197996	41197996	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgccggcagtggctgCgtctggctggcgactggccc	3	7	18	13	3	1	0	0	0	1	0	1	2	1	0	2	6	2	4	2	6	0	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_024876	exon15	c.G1579A	p.A527T	TGGCTGCGTCTGG	.	46	4	44	0	.	.	T	41197996	C	T	41197996	3	4	14	1	0	0	0	0	1	0	0	0	289	768	27	1	59	1	ADCK4	19	41197996	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	350209	41197996	17930987	91	1925											
ZNF223	7766	hgsc.bcm.edu	37	chr19	44564661	44564661	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttcactgaggaggagctgggGctgctggaccttgcccagag	7	8	16	10	0	1	2	1	1	0	1	1	5	1	5	2	5	3	3	2	5	0	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_013361	exon3	c.G69T	p.G23G	GCTGGGGCTGCTG	.	94	4	92	0	.	.	T	44564661	G	T	44564661	2	4	14	1	0	0	0	0	0	0	0	1	17835	1190	42	3		3	ZNF223	19	44564661	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	3366665	44564661	14564322	92	1926											
VRK3	51231	hgsc.bcm.edu	37	chr19	50519394	50519394	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	atgccgcttggatacttttgCcacagtctggacagaaggag	10	10	12	9	1	1	1	0	0	1	1	1	4	1	4	2	3	3	1	2	3	2	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	VRK3,NS,carcinoma,0,1	VRK3	NM_016440	exon3	c.G26A	p.G9D	CTTTTGCCACAGT	.	45	2	62	0	.	0	T	50519394	C	T	50519394	3	4	14	1	0	0	0	0	1	0	0	0	17281	739	26	3	1446	3	VRK3	19	50519394	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	5954733	50519394	8609589	93	1927											
HAS1	3036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52222503	52222503	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gagcgccttgaaggctgtgtAcatgacctcgcgcttgccgc	6	9	13	13	4	0	2	0	2	0	0	1	3	0	2	3	1	3	3	3	1	2	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001523	exon2	c.T658C	p.Y220H	CTGTGTACATGAC	.	24	13	21	0	.	.	G	52222503	A	G	52222503	3	3	14	1	0	0	0	0	1	0	0	0	7002	391	14	4	1094	4	HAS1	19	52222503	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09	1703109	52222503	6906480	94	1928											
LAIR2	3904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55019357	55019357	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctctattataagccccctGgatggtctgagcacagtgac	9	10	10	12	0	2	2	0	2	2	0	2	3	2	3	3	2	2	1	3	2	3	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_002288	exon3	c.G322A	p.G108R	CCCCCTGGATGGT	.	49	27	70	0	.	.	A	55019357	G	A	55019357	3	1	14	1	0	0	0	0	1	0	0	0	8642	1349	47	3	332	3	LAIR2	19	55019357	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	2796854	55019357	4109626	95	1929											
PCSK2	5126	broad.mit.edu	37	chr20	17462329	17462329	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggagcatgtccaggctgtcAtcacggtcaacgcaaccaga	11	7	11	12	2	3	1	3	0	0	1	4	2	4	2	2	3	3	3	2	3	2	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PCSK2,NS,carcinoma,0,1	PCSK2	NM_002594	exon12	c.A1531G	p.I511V	GCTGTCATCACGG	.	50	3	99	0	.	112	G	17462329	A	G	17462329	3	3	14	1	0	0	0	0	1	0	0	0	11648	217	8	4	1577	4	PCSK2	20	17462329	Missense_Mutation	SNP	A	TCGA-W5-AA2T-01A-12D-A417-09		17462329	45563191	96	1930											
ADIG	149685	ucsc.edu	37	chr20	37216803	37216803	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagtggatgggagagacttGccagggaggcaagaggactt	12	6	18	5	0	0	2	0	0	0	2	0	8	0	6	1	5	1	1	1	5	2	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ADIG	.	.	.	.	AGACTTGCCAGGG	.	60	17	97	21	.	16	T	37216803	G	T	37216803	3	4	14	1	0	0	0	0	1	0	0	0	315	1334	46	3		3	ADIG	20	37216803	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	19754474	37216803	25808717	97	1931											
DBNDD2	55861	broad.mit.edu	37	chr20	44035225	44035225	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccacttccgcctcccgcctcTtcctcgttcccggctcccag	2	10	6	23	4	1	0	0	0	1	0	7	0	6	0	8	1	0	2	8	1	0	3	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	DBNDD2	NM_018478	exon1	c.T134G	p.L45R	CGCCTCTTCCTCG	.	12	8	9	0	.	30	G	44035225	T	G	44035225	3	3	14	1	0	0	0	0	1	0	0	0	4278	1624	56	4		4	DBNDD2	20	44035225	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	6818422	44035225	18990295	98	1932											
NCOA3	8202	hgsc.bcm.edu	37	chr20	46279833	46279833	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcagcagcagcagcaGcaacagcagcagcagcagca	15	1	12	13	0	0	0	0	0	0	0	0	0	0	0	0	0	13	12	0	0	1	0	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	34	2	47	0	.	0	A	46279833	G	A	46279833	2	1	14	1	0	0	0	0	0	0	0	1	10277	962	34	3		3	NCOA3	20	46279833	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	2244608	46279833	16745687	99	1933											
NFATC2	4773	hgsc.bcm.edu	37	chr20	50092014	50092014	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgttgccctcatgttgttttTgggctccaagggtatctcca	5	15	10	11	1	2	0	1	0	1	0	4	0	3	0	3	2	1	5	3	2	2	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NFATC2,right_upper_lobe,carcinoma,0,2	NFATC2	NM_012340	exon4	c.A1516C	p.K506Q	TGTTTTTGGGCTC	.	66	4	73	1	.	0	G	50092014	T	G	50092014	3	3	14	1	0	0	0	0	1	0	0	0	10409	1821	63	4	1337	4	NFATC2	20	50092014	Missense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09	3812181	50092014	12933506	100	1934											
MC3R	4159	hgsc.bcm.edu	37	chr20	54824818	54824818	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctttccggagcctggaattgCgcaacacctttagggagatt	9	11	11	10	2	0	1	0	0	0	1	1	4	1	3	3	3	3	1	3	3	3	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MC3R,colon,carcinoma,-1,2	MC3R	NM_019888	exon1	c.C919T	p.R307C	GAATTGCGCAACA	.	35	2	55	0	.	-1	T	54824818	C	T	54824818	3	4	14	1	0	0	0	0	1	0	0	0	9415	768	27	1	921	1	MC3R	20	54824818	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	4732804	54824818	8200702	101	1935											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57769548	57769548	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcttcccactcagggacGtcccggagccacagcacccg	7	7	10	17	3	2	0	1	0	1	0	4	2	4	2	4	2	2	1	4	2	0	2	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	ZNF831,NS,carcinoma,0,1	ZNF831	NM_178457	exon1	c.G3474A	p.T1158T	AGGGACGTCCCGG	.	33	14	47	0	.	0	A	57769548	G	A	57769548	2	1	14	1	0	0	0	0	0	0	0	1	18232	1132	40	1		1	ZNF831	20	57769548	Silent	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	2944730	57769548	5255972	102	1936											
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61512147	61512147	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggcctgtggctctctgtcccCctctgtttcacctgcagggc	2	12	11	16	0	3	0	1	0	2	0	5	0	4	0	4	3	1	3	4	3	0	1	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001193369	exon16	c.G5161C	p.G1721R	TGTCCCCCTCTGT	.	22	9	33	0	.	.	G	61512147	C	G	61512147	3	3	14	1	0	0	0	0	1	0	0	0	4550	623	22	5	1565	5	DIDO1	20	61512147	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	3742599	61512147	1513373	103	1937											
TPTE	7179	hgsc.bcm.edu;broad.mit.edu	37	chr21	10941922	10941922	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccttaccttgattggatttcTatagaaagactgccttccag	10	14	7	10	0	1	3	0	1	1	2	2	4	2	4	4	1	2	0	4	1	4	7	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_199261	exon14	c.A781T	p.R261X	GATTTCTATAGAA	.	112	10	224	0	.	.	A	10941922	T	A	10941922	4	1	14	1	0	0	0	0	0	1	0	0	16491	1530	53	5	918	5	TPTE	21	10941922	Nonsense_Mutation	SNP	T	TCGA-W5-AA2T-01A-12D-A417-09		10941922	37187973	104	1938											
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43857670	43857670	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agccctccgctgtgtgcagaCggccaaactcatcctggaag	9	7	11	14	2	1	1	1	0	0	1	3	2	3	2	4	2	3	2	4	2	2	0	rs201756769	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018961	exon11	c.C1466T	p.T489M	TGCAGACGGCCAA	.	35	17	45	0	0.001	.	T	43857670	C	T	43857670	3	4	14	1	0	0	0	0	1	0	0	0	16900	536	19	1	1508	1	UBASH3A	21	43857670	Missense_Mutation	SNP	C	TCGA-W5-AA2T-01A-12D-A417-09	32915748	43857670	4272225	105	1939											
CDKL5	6792	bcgsc.ca	37	chrX	18622316	18622316	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gattttaatattgacccaaaGccttcagaaggcccagggac	13	9	9	10	0	1	2	1	1	0	1	1	4	1	3	3	2	1	0	3	2	4	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CDKL5	NM_003159	exon12	c.G1272T	p.K424N	CCCAAAGCCTTCA	.	13	3	66	0	.	124	T	18622316	T	T	18622316	3	4	14	1	0	0	0	0	1	0	0	0	3179	962	34	3	1314	3	CDKL5	23	18622316	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09		18622316	136648244	106	1940											
AR	367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	66765910	66765910	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agagcactgaagatactgctGagtattcccctttcaaggga	12	10	10	9	0	1	4	1	2	0	2	2	5	2	5	2	1	3	3	2	1	4	4	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000044	exon1	c.G922A	p.E308K	ACTGCTGAGTATT	.	15	11	64	0	.	.	A	66765910	G	A	66765910	3	1	14	1	0	0	0	0	1	0	0	0	833	1291	45	3	924	3	AR	23	66765910	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	48143594	66765910	88504650	107	1941											
DOCK11	139818	hgsc.bcm.edu	37	chrX	117777438	117777438	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agacccaacttttaaataatGatggccataacccattaatg	16	11	5	9	0	0	2	0	1	0	1	0	2	0	2	3	1	2	0	3	1	6	5	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_144658	exon40	c.G4279T	p.D1427Y	AATAATGATGGCC	.	97	4	231	0	.	.	T	117777438	G	T	117777438	3	4	14	1	0	0	0	0	1	0	0	0	4713	1290	45	3	4437	3	DOCK11	23	117777438	Missense_Mutation	SNP	G	TCGA-W5-AA2T-01A-12D-A417-09	51011528	117777438	37493122	108	1942											
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	10205034	10205034	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	aaaaataatgaaagccaatgGaaagattccccactggcaac	19	6	7	9	0	0	2	0	1	0	1	1	3	1	3	3	2	2	1	3	2	7	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001105562	exon18	c.G2400A	p.W800X	CCAATGGAAAGAT	.	51	33	55	0	.	.	A	10205034	G	A	10205034	4	1	15	1	0	0	0	0	0	1	0	0	16944	1183	41	3	2470	3	UBE4B	1	10205034	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		10205034	239045587	1	1943											
PGD	5226	ucsc.edu;bcgsc.ca	37	chr1	10478978	10478978	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taagtcagctgttgaaaactGccaggtatgtagcctagggc	11	10	12	8	0	1	1	1	1	0	0	1	1	1	1	2	2	4	4	2	2	6	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PGD	NM_002631	exon11	c.G1205A	p.C402Y	AAAACTGCCAGGT	.	38	4	41	0	.	39	A	10478978	G	A	10478978	3	1	15	1	0	0	0	0	1	0	0	0	11835	1319	46	3	1247	3	PGD	1	10478978	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	273944	10478978	238771643	2	1944											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22063114	22063114	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgagttcatacacgtaggaCccacctggagagaaagggag	13	6	13	9	1	1	2	1	1	0	1	1	6	1	5	2	3	1	2	2	3	3	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001032730	exon9	c.G996A	p.G332G	GTAGGACCCACCT	.	40	17	49	0	.	.	T	22063114	C	T	22063114	2	4	15	1	0	0	0	0	0	0	0	1	17139	494	18	3		3	USP48	1	22063114	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	11584136	22063114	227187507	3	1945											
HSPG2	3339	hgsc.bcm.edu	37	chr1	22214554	22214554	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcaggctcttgggaactGgggcactgcaggtggaaagg	8	7	18	8	1	1	0	0	0	1	0	1	2	1	2	0	7	3	4	0	7	2	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HSPG2,NS,malignant_melanoma,0,2	HSPG2	NM_005529	exon7	c.C580T	p.Q194X	GGAACTGGGGCAC	.	30	2	29	0	.	0	A	22214554	G	A	22214554	4	1	15	1	0	0	0	0	0	1	0	0	7474	1357	47	3	12959	3	HSPG2	1	22214554	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	151440	22214554	227036067	4	1946											
IL22RA1	58985	ucsc.edu	37	chr1	24460734	24460734	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggttgacctggagctctaaGtggtagaacaggtcatggaa	11	9	14	7	1	2	2	1	1	1	1	2	4	2	4	1	5	2	3	1	5	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	IL22RA1	NM_021258	exon4	c.C498A	p.H166Q	CTCTAAGTGGTAG	.	43	4	49	0	.	62	T	24460734	G	T	24460734	3	4	15	1	0	0	0	0	1	0	0	0	7717	1020	36	3	1242	3	IL22RA1	1	24460734	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2246180	24460734	224789887	5	1947											
WDTC1	23038	bcgsc.ca	37	chr1	27609889	27609889	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgggacccgctgcaccacaaGaagctgctctccatgcacac	10	6	9	16	1	1	1	0	0	1	1	2	2	1	2	3	1	4	5	3	1	2	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	WDTC1,NS,carcinoma,+2,1	WDTC1	NM_015023	exon5	c.G240T	p.K80N	CCACAAGAAGCTG	.	15	3	27	0	.	69	T	27609889	T	T	27609889	3	4	15	1	0	0	0	0	1	0	0	0	17402	933	33	3	254	3	WDTC1	1	27609889	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3149155	27609889	221640732	6	1948											
PUM1	9698	hgsc.bcm.edu	37	chr1	31465481	31465481	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagatccacttcattagcaGagttctggcaattaccaggg	12	10	10	9	0	2	2	1	0	1	2	3	3	3	2	2	2	2	3	2	2	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PUM1,NS,carcinoma,0,1	PUM1	NM_014676	exon7	c.C914A	p.S305Y	TTAGCAGAGTTCT	.	31	2	28	0	.	0	T	31465481	G	T	31465481	3	4	15	1	0	0	0	0	1	0	0	0	12877	942	33	3	2716	3	PUM1	1	31465481	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3855592	31465481	217785140	7	1949											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34663014	34663014	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctctagtggcaggcaGtaatgagcgccccagagcct	8	7	11	15	1	1	2	0	1	1	1	2	2	2	2	5	2	2	3	5	2	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001134734	exon2	c.G509A	p.S170N	CAGGCAGTAATGA	.	29	13	23	0	.	.	A	34663014	G	A	34663014	3	1	15	1	0	0	0	0	1	0	0	0	2085	1029	36	3	515	3	C1orf94	1	34663014	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3197533	34663014	214587607	8	1950											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44085499	44085499	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggtgtggagggctctgactAcatcaatgccagcttcctgg	7	11	13	10	0	2	1	1	1	1	0	3	2	3	2	2	4	3	2	2	4	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_002840	exon29	c.A5081G	p.Y1694C	CTGACTACATCAA	.	27	10	20	0	.	.	G	44085499	A	G	44085499	3	3	15	1	0	0	0	0	1	0	0	0	12853	391	14	4	5187	4	PTPRF	1	44085499	Missense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	9422485	44085499	205165122	9	1951											
KTI12	112970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52498812	52498812	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcgttagggcctccaggaGttcgggagagtaaaaggcac	11	6	15	9	2	0	1	0	0	0	1	2	3	1	2	2	4	1	4	2	4	3	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_138417	exon1	c.C622A	p.L208I	CCAGGAGTTCGGG	.	88	27	63	0	.	.	T	52498812	G	T	52498812	3	4	15	1	0	0	0	0	1	0	0	0	8623	1029	36	3	446	3	KTI12	1	52498812	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	8413313	52498812	196751809	10	1952											
LDLRAD1	388633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	54474764	54474764	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttgaagaaggttgaaggaCagcgccaccacccagggccg	12	4	13	12	2	0	3	0	2	0	1	0	4	0	4	4	3	1	1	4	3	3	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001010978	exon6	c.G509T	p.C170F	GAAGGACAGCGCC	.	14	4	13	0	.	.	A	54474764	C	A	54474764	3	1	15	1	0	0	0	0	1	0	0	0	8744	478	17	3	112	3	LDLRAD1	1	54474764	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	1975952	54474764	194775857	11	1953											
TMEM59	9528	hgsc.bcm.edu	37	chr1	54512947	54512947	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catagcatcttaccagattcAcattccaatttagttcgatt	12	15	4	10	1	2	1	1	0	1	1	4	2	3	1	2	0	2	2	2	0	4	8	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004872	exon2	c.T288C	p.C96C	AGATTCACATTCC	.	69	4	49	0	.	.	G	54512947	A	G	54512947	2	3	15	1	0	0	0	0	0	0	0	1	16245	157	6	4		4	TMEM59	1	54512947	Silent	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	38183	54512947	194737674	12	1954											
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842252	154842253	+	Missense_Mutation	DNP	AG	AG	CT																															tgctgctgctgaagctgcggAggctgaggctgcagcgaggg																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001204087	exon1	c.C188A	p.P63Q	TGCGGAGGCTGAG	.	44	6	27	0	.	.	CT	154842253	AG	CT	154842252	3	2	15	1	0	0	0	0	1	0	0	0	8124	291	11	4	2060	4	KCNN3	1	154842252	Missense_Mutation	DNP	AG	TCGA-W5-AA2U-01A-11D-A417-09	100329305	154842252	94408369	13	1955											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156622711	156622711	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaaggctcaactgccCtctctatcctactccttttc	6	13	4	18	0	2	0	1	0	1	0	6	0	4	0	4	1	4	1	4	1	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198427	exon8	c.C1969G	p.L657V	ACTGCCCTCTCTA	.	29	11	21	0	.	.	G	156622711	C	G	156622711	3	3	15	1	0	0	0	0	1	0	0	0	1343	681	24	5	1995	5	BCAN	1	156622711	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	1780459	156622711	92627910	14	1956											
LRRC52	440699	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	165513519	165513519	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggaaggtgaaaggagggtggTtgtggcttcttactatgtcc	8	12	16	5	0	1	1	0	1	1	0	2	3	2	3	1	6	1	2	1	6	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GGGTGGTTGTGGC	.	107	18	67	0	.	.	C	165513519	T	C	165513519	1	2	15	0	1	0	0	0	0	0	0	0	9055	1740	60	4		4	LRRC52	1	165513519	RNA	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	8890808	165513519	83737102	15	1957											
PAPPA2	60676	hgsc.bcm.edu	37	chr1	176759060	176759060	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtatgaatgtaccaatGgcttcagcctggacagccag	11	9	11	10	0	1	1	1	1	0	0	1	2	1	2	3	2	3	4	3	2	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_020318	exon18	c.G4831T	p.G1611C	ACCAATGGCTTCA	.	88	4	59	0	.	.	T	176759060	G	T	176759060	3	4	15	1	0	0	0	0	1	0	0	0	11480	1348	47	3	4950	3	PAPPA2	1	176759060	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	11245541	176759060	72491561	16	1958											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	198710997	198710997	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaatattatctcttgactaGaaaaaagaaaaagcaactgg	21	9	6	5	0	1	3	0	1	1	2	2	3	1	3	0	1	2	1	0	1	11	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_080921	exon21	c.1921-1G>T	.	TGACTAGAAAAAA	.	30	13	16	0	.	.	T	198710997	G	T	198710997	5	4	15	1	0	0	0	0	0	0	1	0	12849	956	33	3	2498	3	PTPRC	1	198710997	Splice_Site	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	21951937	198710997	50539624	17	1959											
WDR26	80232	hgsc.bcm.edu	37	chr1	224599141	224599141	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtacataccggatcaacttgCcatatgataactgttgtatc	12	13	7	9	1	1	1	1	1	0	0	2	2	1	2	2	1	5	3	2	1	6	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_025160	exon7	c.G1146A	p.W382X	AACTTGCCATATG	.	79	3	62	0	.	.	T	224599141	C	T	224599141	4	4	15	1	0	0	0	0	0	1	0	0	17343	740	26	3	871	3	WDR26	1	224599141	Nonsense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	25888144	224599141	24651480	18	1960											
SNTG2	54221	hgsc.bcm.edu	37	chr2	1168797	1168797	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggtccccagggccatccagCgaccacagcagtggggcctc	7	4	14	16	1	0	0	0	0	0	0	3	1	2	0	6	4	2	1	6	4	0	0	rs374240224	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SNTG2,NS,neuroblastoma,0,1	SNTG2	NM_018968	exon8	c.C519T	p.S173S	ATCCAGCGACCAC	.	86	4	54	0	.	0	T	1168797	C	T	1168797	2	4	15	1	0	0	0	0	0	0	0	1	14929	767	27	1		1	SNTG2	2	1168797	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		1168797	242030576	19	1961											
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	29366790	29366792	+	In_Frame_Del	DEL	TGT	TGT	-																															ggcctgaagttgggggatcgTgttgttattgcaggacagaa																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_024692	exon7	c.863_865del	p.288_289del	GGATCGTGTTGTT	.	61	16	35	0	.	.	-	29366792	TGT	-	29366790	7	5	15	1	0	1	0	1	0	0	0	0	3558	1683	59	0	886	0	CLIP4	2	29366790	In_Frame_Del	DEL	TGT	TCGA-W5-AA2U-01A-11D-A417-09	28197993	29366790	213832583	20	1962											
BIRC6	57448	bcgsc.ca	37	chr2	32631613	32631613	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagagcattccagatcaGattctgtgacaggtatgtaa	13	11	11	6	0	2	5	1	2	1	3	3	5	3	5	1	1	1	3	1	1	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BIRC6	NM_016252	exon9	c.G1465T	p.D489Y	AGATCAGATTCTG	.	101	4	51	0	.	838	T	32631613	T	T	32631613	3	4	15	1	0	0	0	0	1	0	0	0	1437	942	33	3	1499	3	BIRC6	2	32631613	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3264823	32631613	210567760	21	1963											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	45807033	45807033	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctttaacgtcaggcctaatGtacgatagcagactgagctc	11	10	9	11	2	1	2	1	1	0	1	2	3	1	2	2	1	4	3	2	1	4	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018079	exon7	c.C1053T	p.Y351Y	CCTAATGTACGAT	.	76	42	41	0	.	.	A	45807033	G	A	45807033	2	1	15	1	0	0	0	0	0	0	0	1	15189	1372	48	3		3	SRBD1	2	45807033	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	13175420	45807033	197392340	22	1964											
ERLEC1	27248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54035592	54035592	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttagtggttcttactgctttCgtggggtgagaagtaaatct	8	16	12	5	1	2	1	0	1	2	1	3	2	2	1	0	3	2	3	0	3	5	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ERLEC1,NS,carcinoma,0,1	ERLEC1	NM_015701	exon9	c.C1036T	p.R346C	TGCTTTCGTGGGG	.	93	20	64	0	.	0	T	54035592	C	T	54035592	3	4	15	1	0	0	0	0	1	0	0	0	5259	884	31	1	1070	1	ERLEC1	2	54035592	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	8228559	54035592	189163781	23	1965											
SPTBN1	0	broad.mit.edu	37	chr2	54877117	54877117	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagcatgacatccaggctctGggcacacaggtgggtatggc	9	7	15	10	0	1	1	0	1	1	0	2	2	2	1	1	5	1	4	1	5	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SPTBN1	NM_003128	exon26	c.G5568T	p.L1856L	GGCTCTGGGCACA	.	36	3	26	0	.	378	T	54877117	G	T	54877117	2	4	15	1	0	0	0	0	0	0	0	1	15175	1335	47	3		3	SPTBN1	2	54877117	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	841525	54877117	188322256	24	1966											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu	37	chr2	128522166	128522166	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaaccagtgcaaaatgCggcagacagtacatctctaa	17	6	9	9	1	1	2	0	0	1	2	2	3	1	2	1	1	4	3	1	1	6	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	WDR33_ENST00000409658,NS,carcinoma,0,1	WDR33_ENST00000409658	NM_001006622	exon6	c.G862A	p.A288T	AAAATGCGGCAGA	.	44	3	30	0	.	0	T	128522166	C	T	128522166	3	4	15	1	0	0	0	0	1	0	0	0	17347	768	27	1	3625	1	WDR33	2	128522166	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	73645049	128522166	114677207	25	1967											
LRP1B	53353	hgsc.bcm.edu	37	chr2	141812690	141812690	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	attttaacaacatacttttgCatgacctgccatcacttccc	11	14	3	13	0	1	1	1	1	0	0	2	1	2	1	3	0	5	1	3	0	3	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LRP1B,NS,carcinoma,0,1	LRP1B	NM_018557	exon10	c.G1547A	p.C516Y	CTTTTGCATGACC	.	41	2	35	0	.	0	T	141812690	C	T	141812690	3	4	15	1	0	0	0	0	1	0	0	0	9000	710	25	3	12580	3	LRP1B	2	141812690	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	13290524	141812690	101386683	26	1968											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198266713	198266713	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	taattggtggatttacctttCctctgtgttggcggataccc	6	16	10	9	1	1	0	0	0	1	0	2	2	2	2	3	4	2	1	3	4	3	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SF3B1,right_upper_lobe,carcinoma,0,5	SF3B1	NM_012433	exon15	c.G2219A	p.G740E	ACCTTTCCTCTGT	.	101	31	53	0	.	0	T	198266713	C	T	198266713	3	4	15	1	0	0	0	0	1	0	0	0	14203	855	30	3	1739	3	SF3B1	2	198266713	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	56454023	198266713	44932660	27	1969											
BMPR2	659	hgsc.bcm.edu	37	chr2	203383553	203383553	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aaacacttgcagctgattggCcgaggtcgatatggagcagt	11	9	13	8	2	0	1	0	1	0	0	1	4	0	2	1	3	4	3	1	3	2	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001204	exon6	c.C630T	p.G210G	GATTGGCCGAGGT	.	95	4	54	0	.	.	T	203383553	C	T	203383553	2	4	15	1	0	0	0	0	0	0	0	1	1470	726	26	3		3	BMPR2	2	203383553	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	5116840	203383553	39815820	28	1970											
ERBB4	2066	broad.mit.edu	37	chr2	212530115	212530115	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcatacttgaaaatgaaacTgtttgccccctgtaagccat	13	11	7	10	0	0	2	0	2	0	0	0	2	0	2	3	0	5	3	3	0	5	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	ERBB4	NM_001042599	exon15	c.A1804T	p.S602C	TGAAACTGTTTGC	.	102	5	87	1	.	480	A	212530115	T	A	212530115	3	1	15	1	0	0	0	0	1	0	0	0	5237	1580	55	5	2178	5	ERBB4	2	212530115	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	9146562	212530115	30669258	29	1971											
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	238990770	238990770	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ctcccatcctcgtgcacacgGatgctgcacaggccttgggg	6	8	12	15	2	0	0	0	0	0	0	3	1	2	1	3	4	3	3	3	4	0	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016510	exon6	c.G721A	p.D241N	CACACGGATGCTG	.	35	12	11	0	.	.	A	238990770	G	A	238990770	3	1	15	1	0	0	0	0	1	0	0	0	13961	1174	41	3	719	3	SCLY	2	238990770	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	26460655	238990770	4208603	30	1972											
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	238990809	238990809	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ggaagcagcgcgtggatgtgGaggacctgggcgtggacttc	7	7	19	8	3	0	0	0	0	0	0	1	5	0	5	1	6	2	1	1	6	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016510	exon6	c.G760A	p.E254K	GATGTGGAGGACC	.	28	10	11	0	.	.	A	238990809	G	A	238990809	3	1	15	1	0	0	0	0	1	0	0	0	13961	1175	41	3	758	3	SCLY	2	238990809	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	39	238990809	4208564	31	1973											
HDAC4	9759	hgsc.bcm.edu;bcgsc.ca	37	chr2	240048352	240048352	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccaaccaaggactgtgCgtggaggggcagtgctccca	9	6	14	12	1	0	0	0	0	0	0	1	2	1	2	3	4	4	3	3	4	2	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006037	exon12	c.G1318A	p.A440T	ACTGTGCGTGGAG	.	66	4	52	0	.	.	T	240048352	C	T	240048352	3	4	15	1	0	0	0	0	1	0	0	0	7050	768	27	1	2000	1	HDAC4	2	240048352	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	1057543	240048352	3151021	32	1974											
GAL3ST2	64090	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	242741335	242741335	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgtggcgctgcccgccGgctcacgcgtccacctgggc	2	7	14	18	6	1	0	1	0	0	0	3	0	3	0	5	3	1	2	5	3	0	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_022134	exon3	c.G259A	p.G87S	CCCGCCGGCTCAC	.	48	9	17	0	.	.	A	242741335	G	A	242741335	3	1	15	1	0	0	0	0	1	0	0	0	6238	1116	39	1	269	1	GAL3ST2	2	242741335	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2692983	242741335	458038	33	1975											
CHL1	10752	hgsc.bcm.edu	37	chr3	383704	383704	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgactactgttgctttgcTgcatttccaagattaaggac	11	14	8	8	0	0	2	0	1	0	1	1	3	1	3	1	1	4	4	1	1	4	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CHL1,NS,carcinoma,0,1	CHL1	NM_001253388	exon5	c.T618G	p.A206A	CTTTGCTGCATTT	.	39	2	29	0	.	0	G	383704	T	G	383704	2	3	15	1	0	0	0	0	0	0	0	1	3371	1567	55	4		4	CHL1	3	383704	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09		383704	197638726	34	1976											
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	11744451	11744451	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gactcctcacttacgtttttCgtcatcagcatgcaccagag	9	12	7	13	2	3	1	3	0	0	1	5	2	4	1	2	0	3	3	2	0	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014667	exon2	c.G58A	p.E20K	GTTTTTCGTCATC	.	105	70	92	0	.	.	T	11744451	C	T	11744451	3	4	15	1	0	0	0	0	1	0	0	0	17221	893	31	1	944	1	VGLL4	3	11744451	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	11360747	11744451	186277979	35	1977											
MYH15	22989	hgsc.bcm.edu;bcgsc.ca	37	chr3	108174599	108174599	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttaccttagtgattccaaatCggtactgggtatggtctatc	9	15	9	8	1	1	1	0	1	1	0	4	1	2	1	2	3	2	2	2	3	6	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014981	exon21	c.G2306A	p.R769Q	CCAAATCGGTACT	.	55	4	48	0	.	.	T	108174599	C	T	108174599	3	4	15	1	0	0	0	0	1	0	0	0	10082	884	31	1	3622	1	MYH15	3	108174599	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	96430148	108174599	89847831	36	1978											
EEFSEC	60678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	128060585	128060585	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgcctggtgattggctccagGctagatgcggacattcacac	8	10	12	11	1	1	2	1	1	0	1	2	3	2	3	2	4	2	2	2	4	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_021937	exon5	c.G1296A	p.R432R	CTCCAGGCTAGAT	.	25	7	22	0	.	.	A	128060585	G	A	128060585	2	1	15	1	0	0	0	0	0	0	0	1	4957	1194	42	3		3	EEFSEC	3	128060585	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	19885986	128060585	69961845	37	1979											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130287118	130287118	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acatttcaaatgcaatagacCaaatggctcacattggacaa	17	9	6	9	0	2	1	2	0	0	1	2	2	2	2	1	2	1	2	1	2	5	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001102608	exon5	c.C2071A	p.Q691K	ATAGACCAAATGG	.	72	28	41	0	.	.	A	130287118	C	A	130287118	3	1	15	1	0	0	0	0	1	0	0	0	3726	595	21	3	2089	3	COL6A6	3	130287118	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	2226533	130287118	67735312	38	1980											
PLOD2	5352	hgsc.bcm.edu	37	chr3	145788922	145788922	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaacgctgtcgttcaggggaGtattttactacaaaattcag	12	12	10	7	2	2	0	2	0	0	0	3	2	2	1	0	2	3	3	0	2	6	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_182943	exon19	c.C2028A	p.Y676X	AGGGGAGTATTTT	.	109	5	78	0	.	.	T	145788922	G	T	145788922	4	4	15	1	0	0	0	0	0	1	0	0	12150	1024	36	3	256	3	PLOD2	3	145788922	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	15501804	145788922	52233508	39	1981											
GPR87	53836	hgsc.bcm.edu	37	chr3	151012036	151012036	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atctgatgctttcactcctgGttctgatatttgattttttg	6	21	7	7	0	3	3	1	3	2	0	4	3	4	3	1	1	1	2	1	1	1	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_023915	exon3	c.C998A	p.T333N	CTCCTGGTTCTGA	.	85	4	54	0	.	.	T	151012036	G	T	151012036	3	4	15	1	0	0	0	0	1	0	0	0	6756	1261	44	3	82	3	GPR87	3	151012036	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	5223114	151012036	47010394	40	1982											
THPO	7066	hgsc.bcm.edu	37	chr3	184090419	184090419	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggtggagctggaccacagggGtgggcaaggtgggtggaaga	9	5	22	5	0	0	1	0	0	0	1	0	4	0	4	1	9	1	2	1	9	2	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	THPO,colon,carcinoma,0,1	THPO	NM_000460	exon6	c.C944A	p.T315N	ACAGGGGTGGGCA	.	27	2	19	0	.	0	T	184090419	G	T	184090419	3	4	15	1	0	0	0	0	1	0	0	0	15932	1261	44	3	121	3	THPO	3	184090419	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	33078383	184090419	13932011	41	1983											
ATP13A5	344905	hgsc.bcm.edu;bcgsc.ca	37	chr3	193081945	193081945	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaaggggcatgggatgCagttggcccacactctccac	8	8	12	13	0	1	0	0	0	1	0	2	1	1	1	2	4	2	4	2	4	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198505	exon2	c.G188A	p.C63Y	GGGATGCAGTTGG	.	57	4	31	0	.	.	T	193081945	C	T	193081945	3	4	15	1	0	0	0	0	1	0	0	0	1126	710	25	3	3582	3	ATP13A5	3	193081945	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	8991526	193081945	4940485	42	1984											
MUC4	4585	broad.mit.edu	37	chr3	195505763	195505763	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaaaGgctggtgacaggaagagggg	12	6	18	5	0	0	3	0	2	0	1	0	6	0	6	1	7	1	1	1	7	3	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	NM_018406	exon2	c.C12688T	p.L4230F	AGGAAAGGCTGGT	.	91	5	76	0	.	1505	A	195505763	G	A	195505763	3	1	15	1	0	0	0	0	1	0	0	0	10026	1000	35	3		3	MUC4	3	195505763	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2423818	195505763	2516667	43	1985											
MUC4	4585	hgsc.bcm.edu	37	chr3	195511212	195511212	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagatgggtggcGtgacctgtggatgctgagga	9	8	19	5	1	0	4	0	3	0	1	0	7	0	7	1	5	1	1	1	5	1	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.C7239G	p.H2413Q	GGTGGCGTGACCT	.	169	7	125	0	.	0	C	195511212	G	C	195511212	3	2	15	1	0	0	0	0	1	0	0	0	10026	1136	40	5		5	MUC4	3	195511212	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	5449	195511212	2511218	44	1986											
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	38798332	38798332	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gcaaagtagagttcataatgGcaccattcactctggacaaa	15	9	8	9	0	3	1	2	0	1	1	3	2	3	2	1	2	0	4	1	2	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	TLR1,NS,carcinoma,0,1	TLR1	NM_003263	exon4	c.C2121G	p.C707W	ATAATGGCACCAT	.	99	34	56	0	.	0	C	38798332	G	C	38798332	3	2	15	1	0	0	0	0	1	0	0	0	16009	1195	42	5	243	5	TLR1	4	38798332	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		38798332	152355944	45	1987											
WDFY3	23001	hgsc.bcm.edu	37	chr4	85716106	85716106	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatttgtaggagcattatgaGgggccaaactgggcaaaaaa	15	9	12	5	0	0	1	0	1	0	0	0	2	0	2	1	4	2	3	1	4	7	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014991	exon20	c.C3194A	p.P1065H	TTATGAGGGGCCA	.	86	4	59	0	.	.	T	85716106	G	T	85716106	3	4	15	1	0	0	0	0	1	0	0	0	17330	1000	35	3	7582	3	WDFY3	4	85716106	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	46917774	85716106	105438170	46	1988											
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	88732730	88732732	+	In_Frame_Del	DEL	GGA	GGA	-																															gggaagaagaaagtgtcactGgagccaatgcagaagacacc																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	IBSP,NS,carcinoma,0,1	IBSP	NM_004967	exon7	c.621_623del	p.207_208del	GTCACTGGAGCCA	.	54	18	39	0	.	0	-	88732732	GGA	-	88732730	7	5	15	1	0	1	0	1	0	0	0	0	7519	1349	47	0	644	0	IBSP	4	88732730	In_Frame_Del	DEL	GGA	TCGA-W5-AA2U-01A-11D-A417-09	3016624	88732730	102421546	47	1989											
KIAA0922	23240	hgsc.bcm.edu	37	chr4	154525248	154525248	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgatgccatgcgtgaGaactggatcagcctcagata	11	9	11	10	1	2	3	2	2	0	2	2	5	2	4	2	1	5	1	2	1	2	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	KIAA0922_ENST00000409959,NS,carcinoma,0,2	KIAA0922_ENST00000409959	NM_001131007	exon25	c.G3084T	p.E1028D	GCGTGAGAACTGG	.	46	2	38	0	.	0	T	154525248	G	T	154525248	3	4	15	1	0	0	0	0	1	0	0	0	8243	933	33	3	3182	3	KIAA0922	4	154525248	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	65792518	154525248	36629028	48	1990											
MAP9	79884	hgsc.bcm.edu	37	chr4	156281387	156281387	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagatagtagtggatcaactGttctgtcatcatccataatc	12	14	7	8	0	4	1	3	0	1	1	6	2	5	2	1	1	1	2	1	1	5	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MAP9,NS,carcinoma,0,1	MAP9	NM_001039580	exon7	c.C983A	p.T328K	TCAACTGTTCTGT	.	75	3	67	0	.	0	T	156281387	G	T	156281387	3	4	15	1	0	0	0	0	1	0	0	0	9320	1377	48	3	992	3	MAP9	4	156281387	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1756139	156281387	34872889	49	1991											
GUCY1A3	2982	hgsc.bcm.edu	37	chr4	156632290	156632290	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctaattttgaagaatactttGaaattctgactccaaaaatc	16	14	4	7	0	1	4	0	3	1	1	3	4	2	4	1	0	1	0	1	0	7	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GUCY1A3,scalp,carcinoma,0,1	GUCY1A3	NM_001130687	exon6	c.G973T	p.E325X	TACTTTGAAATTC	.	50	2	42	0	.	0	T	156632290	G	T	156632290	4	4	15	1	0	0	0	0	0	1	0	0	6935	1291	45	3	987	3	GUCY1A3	4	156632290	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	350903	156632290	34521986	50	1992											
GLRA3	8001	hgsc.bcm.edu	37	chr4	175580272	175580272	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgatacaaaatttacagctGcatactccagaagtgctgaa	15	11	7	8	0	0	3	0	2	0	1	1	3	1	3	1	0	6	3	1	0	7	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GLRA3,colon,carcinoma,0,1	GLRA3	NM_001042543	exon8	c.C1004T	p.A335V	ACAGCTGCATACT	.	38	2	34	0	.	0	A	175580272	G	A	175580272	3	1	15	1	0	0	0	0	1	0	0	0	6498	1319	46	3	402	3	GLRA3	4	175580272	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	18947982	175580272	15574004	51	1993											
SNX25	83891	bcgsc.ca	37	chr4	186185626	186185626	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caagaccttttgtgttgcacGcatgcttgaggaactcagat	10	12	10	9	1	1	3	1	1	0	2	1	4	1	4	1	1	3	4	1	1	2	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SNX25	NM_031953	exon4	c.G274A	p.A92T	TTGCACGCATGCT	.	121	5	45	0	.	100	A	186185626	A	A	186185626	3	1	15	1	0	0	0	0	1	0	0	0	14950	1087	38	1	284	1	SNX25	4	186185626	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	10605354	186185626	4968650	52	1994											
IRX1	79192	hgsc.bcm.edu	37	chr5	3599509	3599509	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aaggcctggctcaacgagcaCcgcaagaatccctaccccac	12	4	8	17	2	1	1	1	0	0	1	2	2	2	1	5	2	3	3	5	2	5	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_024337	exon2	c.C447T	p.H149H	CGAGCACCGCAAG	.	39	2	44	0	.	106	T	3599509	C	T	3599509	2	4	15	1	0	0	0	0	0	0	0	1	7887	506	18	3		3	IRX1	5	3599509	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		3599509	177315751	53	1995											
ELOVL7	79993	bcgsc.ca	37	chr5	60067809	60067809	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttgagttcaaagggcttgCgattttccatgagctttggt	7	16	11	7	1	2	2	1	2	1	0	3	3	3	2	1	2	2	3	1	2	1	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ELOVL7,NS,lymphoid_neoplasm,0,1	ELOVL7	NM_001104558	exon3	c.G176A	p.R59H	GGCTTGCGATTTT	.	58	4	42	0	.	24	T	60067809	T	T	60067809	3	4	15	1	0	0	0	0	1	0	0	0	5107	768	27	1	693	1	ELOVL7	5	60067809	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	56468300	60067809	120847451	54	1996											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66391445	66391445	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	gactgatggacgccgctggtCgttggcttctctcccttcct	3	13	11	14	3	1	1	0	1	1	0	5	3	3	2	3	3	0	3	3	3	0	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001164664	exon7	c.C854G	p.S285W	GCTGGTCGTTGGC	.	75	33	44	0	.	.	G	66391445	C	G	66391445	3	3	15	1	0	0	0	0	1	0	0	0	9377	893	31	5	1010	5	MAST4	5	66391445	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	6323636	66391445	114523815	55	1997											
MAP1B	4131	hgsc.bcm.edu	37	chr5	71491850	71491850	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaccaaaggtcctgccGagtcccctgatgagggaatc	11	7	11	12	1	1	2	1	2	0	0	4	4	3	3	5	2	1	0	5	2	3	0	rs139604402	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005909	exon5	c.G2668T	p.E890X	CCTGCCGAGTCCC	.	42	3	34	0	.	.	T	71491850	G	T	71491850	4	4	15	1	0	0	0	0	0	1	0	0	9278	1059	37	2	2686	2	MAP1B	5	71491850	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	5100405	71491850	109423410	56	1998											
FAM169A	26049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74091907	74091907	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gggtttccagtgctggccgtGcatctctatcactgctttca	5	14	10	12	1	3	0	2	0	1	0	5	0	4	0	2	2	3	4	2	2	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	FAM169A,NS,carcinoma,0,1	FAM169A	NM_015566	exon11	c.C1208A	p.A403E	GGCCGTGCATCTC	.	36	15	30	0	.	0	T	74091907	G	T	74091907	3	4	15	1	0	0	0	0	1	0	0	0	5517	1319	46	3	816	3	FAM169A	5	74091907	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2600057	74091907	106823353	57	1999											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75969392	75969392	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaagtcctgaattctatcAtttcttcccttgatctactg	10	16	4	11	0	4	2	1	2	3	0	6	2	6	2	2	0	1	0	2	0	4	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006633	exon25	c.A3187T	p.I1063F	TCTATCATTTCTT	.	60	20	44	0	.	.	T	75969392	A	T	75969392	3	4	15	1	0	0	0	0	1	0	0	0	7859	217	8	5	3285	5	IQGAP2	5	75969392	Missense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	1877485	75969392	104945868	58	2000											
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	96503500	96503500	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tctgattcttctagacagttCcgttcactttcattttctga	7	19	5	10	1	6	3	2	2	4	1	7	3	7	3	1	0	0	2	1	0	1	8	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001159749	exon8	c.G1068T	p.R356R	ACAGTTCCGTTCA	.	35	17	31	0	.	.	A	96503500	C	A	96503500	2	1	15	1	0	0	0	0	0	0	0	1	13430	842	30	3		3	RIOK2	5	96503500	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	20534108	96503500	84411760	59	2001											
SRA1	10011	hgsc.bcm.edu	37	chr5	139931630	139931630	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcacatcctccatcacAgcctcagactcgactgggaa	11	7	7	16	1	3	1	3	0	0	1	6	3	5	2	3	1	2	1	3	1	1	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_001035235	exon3	c.T327A	p.A109A	CATCACAGCCTCA	.	97	3	23	0	.	24	T	139931630	A	T	139931630	2	4	15	1	0	0	0	0	0	0	0	1	15188	175	7	5		5	SRA1	5	139931630	Silent	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	43428130	139931630	40983630	60	2002											
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140250727	140250727	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggcgccaaaggcctcttcccGgactttggcgggcgccgcga	5	6	15	15	6	1	0	0	0	1	0	2	2	2	1	4	5	0	0	4	5	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018902	exon1	c.G2039A	p.R680Q	CTTCCCGGACTTT	.	114	27	38	0	.	.	A	140250727	G	A	140250727	3	1	15	1	0	0	0	0	1	0	0	0	11568	1116	39	1	2041	1	PCDHA11	5	140250727	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	319097	140250727	40664533	61	2003											
FAT2	2196	broad.mit.edu;ucsc.edu	37	chr5	150948137	150948137	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttctctgtggcttggAtgatgagggtgtagctgtct	5	15	15	6	0	3	2	0	2	3	0	4	3	3	3	0	4	1	3	0	4	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	FAT2	NM_001447	exon1	c.T356C	p.I119T	GCTTGGATGATGA	.	40	11	21	5	.	465	G	150948137	A	G	150948137	3	3	15	1	0	0	0	0	1	0	0	0	5723	333	12	4	12785	4	FAT2	5	150948137	Missense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	10697410	150948137	29967123	62	2004											
GMPR	2766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	16290801	16290801	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcaagctcttctacgggaTgagctctgacaccgccatga	9	9	10	13	2	4	3	1	3	3	0	4	4	4	4	2	1	3	3	2	1	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006877	exon8	c.T806A	p.M269K	ACGGGATGAGCTC	.	45	16	34	0	.	.	A	16290801	T	A	16290801	3	1	15	1	0	0	0	0	1	0	0	0	6538	1464	51	5	836	5	GMPR	6	16290801	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09		16290801	154824266	63	2005											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	29080455	29080455	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccggccatgtgcatgtatcTccagccaccatcaggaaatt	10	10	8	13	1	2	0	1	0	1	0	4	1	3	1	5	2	2	2	5	2	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001005216	exon1	c.T788G	p.L263R	TGTATCTCCAGCC	.	27	12	25	0	.	.	G	29080455	T	G	29080455	3	3	15	1	0	0	0	0	1	0	0	0	11052	1551	54	4	790	4	OR2J3	6	29080455	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	12789654	29080455	142034612	64	2006											
DDR1	780	hgsc.bcm.edu	37	chr6	30858814	30858814	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccttgggccccccatggttgCccgactggttcgcttctacc	3	11	10	17	2	1	0	0	0	1	0	2	1	1	0	6	3	2	3	6	3	1	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001202523	exon5	c.C536T	p.A179V	TGGTTGCCCGACT	.	62	4	39	0	.	.	T	30858814	C	T	30858814	3	4	15	1	0	0	0	0	1	0	0	0	4359	739	26	3	496	3	DDR1	6	30858814	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	1778359	30858814	140256253	65	2007											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	65300622	65300622	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cttgatttagtacctcagtgGgtcccatagttatgccatat	9	15	8	9	0	1	1	1	1	0	0	2	1	2	1	3	1	2	2	3	1	5	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001142800	exon26	c.C5138T	p.P1713L	TCAGTGGGTCCCA	.	68	25	38	0	.	.	A	65300622	G	A	65300622	3	1	15	1	0	0	0	0	1	0	0	0	5360	1232	43	3	4213	3	EYS	6	65300622	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	34441808	65300622	105814445	66	2008											
RIMS1	22999	hgsc.bcm.edu	37	chr6	72892048	72892048	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaagagcgagcggaaaCgcgtgccaaagacctcagcg	12	3	13	13	5	1	3	1	1	0	2	1	5	1	4	3	1	5	0	3	1	3	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	RIMS1,colon,carcinoma,0,1	RIMS1	NM_014989	exon6	c.C874T	p.R292C	CGGAAACGCGTGC	.	38	2	35	0	.	0	T	72892048	C	T	72892048	3	4	15	1	0	0	0	0	1	0	0	0	13419	536	19	1	896	1	RIMS1	6	72892048	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	7591426	72892048	98223019	67	2009											
KIAA1009	22832	broad.mit.edu	37	chr6	84894963	84894963	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagtttttgctttttataatGtcctctgaagttttcttttc	7	23	5	6	0	2	1	0	1	2	0	4	1	3	1	1	0	1	3	1	0	4	10	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	KIAA1009	NM_014895	exon13	c.C1605A	p.D535E	TATAATGTCCTCT	.	61	3	94	0	.	119	T	84894963	G	T	84894963	3	4	15	1	0	0	0	0	1	0	0	0	8245	1368	48	3	2666	3	KIAA1009	6	84894963	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	12002915	84894963	86220104	68	2010											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	94068073	94068073	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	atcagaaaaactgtgagttgGacaacgagagcactgaagat	17	7	11	6	1	1	5	1	2	0	3	1	7	1	6	0	1	3	2	0	1	4	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004440	exon4	c.C889T	p.P297S	GAGTTGGACAACG	.	21	9	27	0	.	.	A	94068073	G	A	94068073	3	1	15	1	0	0	0	0	1	0	0	0	5200	1174	41	3	2163	3	EPHA7	6	94068073	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	9173110	94068073	77046994	69	2011											
SOBP	55084	broad.mit.edu;ucsc.edu	37	chr6	107827478	107827478	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caaaaccaaaattacccgagGacagtgttatttcaccatac	16	9	5	11	1	1	0	1	0	0	0	1	2	1	1	3	1	3	1	3	1	7	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SOBP	NM_018013	exon3	c.G268T	p.D90Y	CCCGAGGACAGTG	.	50	5	53	1	.	53	T	107827478	G	T	107827478	3	4	15	1	0	0	0	0	1	0	0	0	14966	1174	41	3	278	3	SOBP	6	107827478	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	13759405	107827478	63287589	70	2012											
HEATR2	54919	hgsc.bcm.edu	37	chr7	814755	814755	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caacacgttcttaaaaacctCgggcggcatgacggatccag	12	7	10	12	4	1	1	0	1	1	0	3	2	2	2	2	3	2	2	2	3	4	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HEATR2,NS,carcinoma,0,1	HEATR2	NM_017802	exon11	c.C2195A	p.S732X	AAACCTCGGGCGG	.	46	4	28	0	.	0	A	814755	C	A	814755	4	1	15	1	0	0	0	0	0	1	0	0	7069	893	31	2	2237	2	HEATR2	7	814755	Nonsense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		814755	158323908	71	2013											
CPVL	54504	hgsc.bcm.edu	37	chr7	29111505	29111505	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aatttggtacaggaattctgCatagccccctataatctgag	12	12	8	9	0	2	1	0	1	2	0	2	2	2	2	2	2	3	2	2	2	6	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_019029	exon9	c.G748A	p.A250T	ATTCTGCATAGCC	.	98	3	55	0	.	.	T	29111505	C	T	29111505	3	4	15	1	0	0	0	0	1	0	0	0	3858	710	25	3	702	3	CPVL	7	29111505	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	28296750	29111505	130027158	72	2014											
CCDC129	223075	hgsc.bcm.edu	37	chr7	31617535	31617535	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgccttctcatctctgctGagtgatgtcagcatcctgcc	7	13	8	13	0	3	2	2	2	2	0	6	2	4	2	3	0	4	2	3	0	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LOC223075,NS,carcinoma,0,2	LOC223075	NM_001257968	exon8	c.G735T	p.L245L	TCTGCTGAGTGAT	.	53	3	28	0	.	0	T	31617535	G	T	31617535	2	4	15	1	0	0	0	0	0	0	0	1	2782	1277	45	3		3	CCDC129	7	31617535	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2506030	31617535	127521128	73	2015											
GRM3	2913	hgsc.bcm.edu	37	chr7	86394780	86394780	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caagggatacctatgcattgGagcaatcactggagtttgtc	11	11	11	8	0	1	0	1	0	0	0	2	3	1	3	1	3	3	3	1	3	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GRM3,NS,carcinoma,-2,1	GRM3	NM_000840	exon2	c.G319T	p.E107X	GCATTGGAGCAAT	.	43	2	31	0	.	-2	T	86394780	G	T	86394780	4	4	15	1	0	0	0	0	0	1	0	0	6839	1175	41	3	321	3	GRM3	7	86394780	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	54777245	86394780	72743883	74	2016											
FZD1	8321	hgsc.bcm.edu	37	chr7	90894459	90894459	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggcccgggccggggcagcaAccgccgccgccgcctcagca	5	1	16	19	6	1	0	1	0	0	0	1	0	1	0	7	4	3	3	7	4	1	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,4	.	NM_003505	exon1	c.A264G	p.Q88Q	GCAGCAACCGCCG	.	20	4	7	0	.	64	G	90894459	A	G	90894459	2	3	15	1	0	0	0	0	0	0	0	1	6163	40	2	4		4	FZD1	7	90894459	Silent	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	4499679	90894459	68244204	75	2017											
ZCWPW1	55063	hgsc.bcm.edu;bcgsc.ca	37	chr7	100000187	100000187	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttgactcgcttacgaatggGcaaaattgggtcctgaggat	10	12	12	7	2	0	2	0	2	0	0	2	4	1	3	1	3	1	2	1	3	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017984	exon16	c.C1423T	p.P475S	GAATGGGCAAAAT	.	57	4	30	0	.	.	A	100000187	G	A	100000187	3	1	15	1	0	0	0	0	1	0	0	0	17655	1203	42	3	535	3	ZCWPW1	7	100000187	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	9105728	100000187	59138476	76	2018											
ZAN	7455	bcgsc.ca	37	chr7	100349919	100349919	+	Missense_Mutation	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccatccccacagaaaaaTccaccatctccccagaaaaa	17	4	2	18	0	1	2	0	0	1	2	4	2	3	2	8	0	0	0	8	0	4	0	rs200193075	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ZAN,trunk,malignant_melanoma,0,1	ZAN	.	.	.	.	GAAAAATCCACCA	.	182	24	133	9	T|0.996;C|0.004	658	C	100349919	C	C	100349919	3	2	15	1	0	0	0	0	1	0	0	0	17573	1435	50	4	2241	4	ZAN	7	100349919	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	349732	100349919	58788744	77	2019											
CFTR	1080	hgsc.bcm.edu	37	chr7	117232262	117232262	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgctcctgtctcctggacaGaaacaaaaaaacaatctttt	15	11	5	10	0	2	1	0	0	2	1	4	2	3	2	2	1	3	1	2	1	5	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CFTR,NS,carcinoma,0,1	CFTR	NM_000492	exon14	c.G2041T	p.E681X	TGGACAGAAACAA	.	40	2	25	0	.	0	T	117232262	G	T	117232262	4	4	15	1	0	0	0	0	0	1	0	0	3316	943	33	3	2095	3	CFTR	7	117232262	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	16882343	117232262	41906401	78	2020											
PRSS1	5644	bcgsc.ca	37	chr7	142458938	142458938	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agggcaattaagtcaaaattTtcaggaagagggtgtgaata	16	10	12	3	0	2	2	2	1	0	1	2	3	2	3	0	3	0	1	0	3	7	4	rs374770738	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PRSS1	.	.	.	.	AAAATTTTCAGGA	.	55	6	38	0	.	68	A	142458938	A	A	142458938	3	1	15	1	0	0	0	0	1	0	0	0	12664	1856	64	5		5	PRSS1	7	142458938	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	25226676	142458938	16679725	79	2021											
DLGAP2	9228	hgsc.bcm.edu	37	chr8	1626409	1626409	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaacgttctaacagcgTcacggccgccgtccaagctg	9	10	9	13	5	2	0	1	0	1	0	3	0	3	0	3	1	4	2	3	1	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004745	exon9	c.T2078C	p.V693A	ACAGCGTCACGGC	.	77	4	41	0	.	.	C	1626409	T	C	1626409	3	2	15	1	0	0	0	0	1	0	0	0	4588	1667	58	4	2108	4	DLGAP2	8	1626409	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09		1626409	144737613	80	2022											
BLK	640	hgsc.bcm.edu	37	chr8	11415529	11415529	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agattgtcactcccaaggctGattgacatgtcggcgcaggt	9	10	12	10	2	1	3	1	2	0	1	3	3	2	3	1	3	0	2	1	3	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	BLK,NS,carcinoma,+2,1	BLK	NM_001715	exon10	c.G1011T	p.L337L	AAGGCTGATTGAC	.	22	2	16	0	.	+2	T	11415529	G	T	11415529	2	4	15	1	0	0	0	0	0	0	0	1	1443	1277	45	3		3	BLK	8	11415529	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	9789120	11415529	134948493	81	2023											
SLC7A2	6542	broad.mit.edu	37	chr8	17415880	17415880	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acactcatggcctactctctGgtggcagcctgtgttctcat	6	13	9	13	0	3	0	2	0	2	0	5	0	3	0	2	3	2	2	2	3	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC7A2	NM_001164771	exon8	c.G1392T	p.L464L	CTCTCTGGTGGCA	.	50	4	23	0	.	157	T	17415880	G	T	17415880	2	4	15	1	0	0	0	0	0	0	0	1	14752	1335	47	3		3	SLC7A2	8	17415880	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	6000351	17415880	128948142	82	2024											
PHYHIP	9796	broad.mit.edu	37	chr8	22079030	22079030	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatgaggtcctgggcgtggcGgaagaccagctccccatcct	7	7	14	13	2	0	2	0	1	0	1	3	4	3	3	5	4	1	1	5	4	1	0	rs199574600	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PHYHIP	NM_014759	exon5	c.C829A	p.R277S	CGTGGCGGAAGAC	.	26	3	17	0	.	24	T	22079030	G	T	22079030	3	4	15	1	0	0	0	0	1	0	0	0	11914	1116	39	2	167	2	PHYHIP	8	22079030	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	4663150	22079030	124284992	83	2025											
PXDNL	137902	hgsc.bcm.edu	37	chr8	52361599	52361599	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataacaggaggtgggttgccGtcagcttcacagagccactc	10	8	12	11	1	2	1	2	0	0	1	3	2	2	2	2	3	4	2	2	3	1	3	rs377262954	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PXDNL_ENST00000356297,NS,carcinoma,0,1	PXDNL_ENST00000356297	NM_144651	exon11	c.C1329A	p.D443E	GTTGCCGTCAGCT	.	35	3	23	0	.	0	T	52361599	G	T	52361599	3	4	15	1	0	0	0	0	1	0	0	0	12900	1136	40	2	3114	2	PXDNL	8	52361599	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	30282569	52361599	94002423	84	2026											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	69129946	69129946	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcaggctacagatgtgatgcGgaagcaggtaggtctcatgc	10	8	15	8	1	1	2	1	1	1	1	2	3	1	3	0	4	4	4	0	4	3	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PREX2,NS,carcinoma,0,1	PREX2	NM_024870	exon38	c.G4700A	p.R1567Q	TGATGCGGAAGCA	.	19	8	29	0	.	0	A	69129946	G	A	69129946	3	1	15	1	0	0	0	0	1	0	0	0	12529	1116	39	1	5079	1	PREX2	8	69129946	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	16768347	69129946	77234076	85	2027											
LRRCC1	85444	hgsc.bcm.edu	37	chr8	86038933	86038933	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttcagtcccttgttGaacagctagaccaagagaga	11	13	8	9	0	2	4	1	1	1	3	3	5	3	4	2	0	2	2	2	0	3	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_033402	exon9	c.G1282T	p.E428X	CTTGTTGAACAGC	.	85	3	46	0	.	.	T	86038933	G	T	86038933	4	4	15	1	0	0	0	0	0	1	0	0	9071	1291	45	3	1316	3	LRRCC1	8	86038933	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	16908987	86038933	60325089	86	2028											
NBN	4683	broad.mit.edu	37	chr8	90983510	90983510	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tagatggttcatcaagaggtGggtaaaaactgtaaaaataa	18	10	10	3	0	2	2	2	0	0	2	2	2	2	2	0	3	1	3	0	3	9	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	NBN	NM_002485	exon6	c.C593A	p.P198Q	AGAGGTGGGTAAA	.	222	4	112	0	.	86	T	90983510	G	T	90983510	3	4	15	1	0	0	0	0	1	0	0	0	10239	1348	47	3	1715	3	NBN	8	90983510	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	4944577	90983510	55380512	87	2029											
SLC25A32	81034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	104413805	104413805	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgtgttgatcctgaagacGagctcttacgacttgatatg	10	13	10	8	2	1	4	0	3	1	1	2	6	2	4	1	0	2	2	1	0	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_030780	exon6	c.C751A	p.R251S	GAAGACGAGCTCT	.	93	4	38	0	.	.	T	104413805	G	T	104413805	3	4	15	1	0	0	0	0	1	0	0	0	14551	1058	37	2	204	2	SLC25A32	8	104413805	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	13430295	104413805	41950217	88	2030											
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	105510177	105510177	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gttggaggatttgcttctttGgcacagatctcttcatcgga	7	15	11	8	1	3	1	1	0	2	1	5	4	3	4	0	4	1	3	0	4	0	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_013437	exon5	c.C603T	p.A201A	TTCTTTGGCACAG	.	97	23	46	0	.	.	A	105510177	G	A	105510177	2	1	15	1	0	0	0	0	0	0	0	1	8999	1335	47	3		3	LRP12	8	105510177	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1096372	105510177	40853845	89	2031											
TRMT12	55039	hgsc.bcm.edu;bcgsc.ca	37	chr8	125464268	125464268	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gctgtatcctcagcaaattaCcaccaaccaatggaaaaatg	16	8	6	11	0	1	0	1	0	0	0	2	1	2	1	4	1	3	3	4	1	7	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017956	exon1	c.C1100T	p.T367I	AAATTACCACCAA	.	80	4	57	0	.	.	T	125464268	C	T	125464268	3	4	15	1	0	0	0	0	1	0	0	0	16625	507	18	3	1102	3	TRMT12	8	125464268	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	19954091	125464268	20899754	90	2032											
OC90	729330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133044207	133044207	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaattcctccgggcaccGggatgtcagacaaaagagca	13	6	10	12	2	2	2	2	0	0	2	4	3	4	3	3	2	1	2	3	2	3	1	rs199706785	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001080399	exon12	c.C952A	p.R318R	GGCACCGGGATGT	.	35	11	21	0	.	.	T	133044207	G	T	133044207	2	4	15	1	0	0	0	0	0	0	0	1	10862	1115	39	2		2	OC90	8	133044207	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	7579939	133044207	13319815	91	2033											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	144991673	144991673	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggggtcagtgatacaacgctCcatcagctgcaggtaggtga	10	8	14	9	1	2	2	2	2	0	0	3	2	3	2	1	4	4	4	1	4	3	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PLEC_ENST00000436759,NS,carcinoma,0,3	PLEC_ENST00000436759	NM_201380	exon32	c.G12727T	p.E4243X	AACGCTCCATCAG	.	60	13	29	0	.	0	A	144991673	C	A	144991673	4	1	15	1	0	0	0	0	0	1	0	0	12100	864	30	3	1331	3	PLEC	8	144991673	Nonsense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	11947466	144991673	1372349	92	2034											
SLC39A4	55630	broad.mit.edu	37	chr8	145640396	145640396	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctgttgctggagctgatgaGgggcacagggtcccagctgc	6	8	17	10	0	0	2	0	2	0	0	1	3	1	3	1	4	4	6	1	4	0	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC39A4	NM_130849	exon4	c.C766A	p.L256I	TGATGAGGGGCAC	.	64	4	26	0	.	54	T	145640396	G	T	145640396	3	4	15	1	0	0	0	0	1	0	0	0	14675	1000	35	3	1213	3	SLC39A4	8	145640396	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	648723	145640396	723626	93	2035											
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	4685133	4685133	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtgtctgtggagcacggatgCcattagcaaggatgttttta	9	13	13	6	1	1	0	0	0	1	0	1	3	1	3	1	3	3	3	1	3	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017913	exon2	c.C389T	p.A130V	CGGATGCCATTAG	.	59	5	72	0	.	.	T	4685133	C	T	4685133	3	4	15	1	0	0	0	0	1	0	0	0	3091	739	26	3	395	3	CDC37L1	9	4685133	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		4685133	136528298	94	2036											
VPS13A	23230	hgsc.bcm.edu	37	chr9	79890501	79890501	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttaaaagtattcgaaccaGaaagttacaaaagcaggatt	19	9	8	5	1	0	1	0	0	0	1	1	3	0	2	1	1	3	4	1	1	8	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001018038	exon25	c.G2600T	p.R867I	GAACCAGAAAGTT	.	95	4	93	0	.	.	T	79890501	G	T	79890501	3	4	15	1	0	0	0	0	1	0	0	0	17249	942	33	3	2698	3	VPS13A	9	79890501	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	75205368	79890501	61322930	95	2037											
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	94487167	94487167	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccacgcccagcaggcagaCgacgttggggtgttgcagcc	8	5	14	14	3	0	1	0	0	0	1	0	2	0	1	3	3	3	5	3	3	0	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004560	exon9	c.G1609A	p.V537I	GGCAGACGACGTT	.	9	7	19	0	.	.	T	94487167	C	T	94487167	3	4	15	1	0	0	0	0	1	0	0	0	13579	536	19	1	1226	1	ROR2	9	94487167	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	14596666	94487167	46726264	96	2038											
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	127762184	127762184	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acataccagtgcatttccttGtgggactgatttcgtttgtg	7	16	10	8	1	0	1	0	1	0	0	2	2	1	2	2	1	2	2	2	1	1	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_173690	exon14	c.C1299A	p.H433Q	TTCCTTGTGGGAC	.	81	4	52	0	.	.	T	127762184	G	T	127762184	3	4	15	1	0	0	0	0	1	0	0	0	13922	1368	48	3	614	3	SCAI	9	127762184	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	33275017	127762184	13451247	97	2039											
MARCH8	220972	bcgsc.ca	37	chr10	46028613	46028613	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgtagactctagcagagatgGcatcctgggatggaatggca	11	9	14	7	0	1	2	0	0	1	2	2	5	2	4	1	4	1	4	1	4	3	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	MARCH8	NM_001002266	exon2	c.C47T	p.A16V	GAGATGGCATCCT	.	58	4	45	0	.	29	A	46028613	A	A	46028613	3	1	15	1	0	0	0	0	1	0	0	0	9357	1203	42	3	852	3	MARCH8	10	46028613	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		46028613	89506134	98	2040											
ZDHHC6	64429	hgsc.bcm.edu	37	chr10	114200370	114200370	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacaaggtggtagcaaatgcAgctaatccaaatggaacaat	18	7	9	7	0	0	0	0	0	0	0	1	1	1	1	1	3	5	4	1	3	8	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_022494	exon5	c.T603C	p.A201A	AAATGCAGCTAAT	.	82	2	68	0	.	.	G	114200370	A	G	114200370	2	3	15	1	0	0	0	0	0	0	0	1	17677	175	7	4		4	ZDHHC6	10	114200370	Silent	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	68171757	114200370	21334377	99	2041											
SLC18A2	6571	hgsc.bcm.edu	37	chr10	119003781	119003781	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgcctcgaaagccaccGtccagctcatcaccaaccct	9	9	6	17	2	2	0	2	0	0	0	4	1	3	0	6	0	4	2	6	0	2	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SLC18A2,NS,haematopoietic_neoplasm,0,1	SLC18A2	NM_003054	exon3	c.G421T	p.V141F	GCCACCGTCCAGC	.	37	2	20	0	.	0	T	119003781	G	T	119003781	3	4	15	1	0	0	0	0	1	0	0	0	14481	1145	40	2	427	2	SLC18A2	10	119003781	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	4803411	119003781	16530966	100	2042											
HPS5	11234	hgsc.bcm.edu	37	chr11	18339303	18339303	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatcaagaaattcacctttaGacgactggagtccagccgca	13	8	9	11	2	2	2	2	0	0	2	3	5	3	3	3	1	1	1	3	1	3	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HPS5,NS,carcinoma,0,1	HPS5	NM_181507	exon2	c.C103A	p.L35I	CCTTTAGACGACT	.	58	3	43	0	.	0	T	18339303	G	T	18339303	3	4	15	1	0	0	0	0	1	0	0	0	7383	933	33	3	3374	3	HPS5	11	18339303	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		18339303	116667213	101	2043											
CSRP3	8048	hgsc.bcm.edu	37	chr11	19206570	19206570	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttcccacagatggcacagCggaaacaggtcttgtgccaa	11	8	10	12	1	2	1	0	0	2	1	3	2	3	2	2	3	3	1	2	3	2	2	rs377066670		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CSRP3,NS,malignant_melanoma,0,1	CSRP3	NM_003476	exon6	c.G437A	p.R146H	GCACAGCGGAAAC	.	68	3	44	1	.	0	T	19206570	C	T	19206570	3	4	15	1	0	0	0	0	1	0	0	0	3994	768	27	1	155	1	CSRP3	11	19206570	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	867267	19206570	115799946	102	2044											
LMO2	4005	ucsc.edu	37	chr11	33881017	33881017	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcttctgacaggcggcgcatTtgaaacattccaggtgatac	10	10	11	10	2	1	3	0	3	1	0	2	3	2	3	1	3	2	2	1	3	2	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LMO2,NS,carcinoma,-1,2	LMO2	NM_005574	exon6	c.A569G	p.K190R	GCGCATTTGAAAC	.	42	4	33	0	.	21	C	33881017	T	C	33881017	3	2	15	1	0	0	0	0	1	0	0	0	8893	1841	64	4	118	4	LMO2	11	33881017	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	14674447	33881017	101125499	103	2045											
AMBRA1	55626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46529852	46529852	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttggtagcgcatggagcgcTggcgaatactgtctctccgt	6	11	14	10	4	1	0	0	0	1	0	3	2	2	1	1	3	3	4	1	3	3	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001267782	exon11	c.A2237G	p.Q746R	GAGCGCTGGCGAA	.	49	18	37	0	.	.	C	46529852	T	C	46529852	3	2	15	1	0	0	0	0	1	0	0	0	561	1580	55	4	1708	4	AMBRA1	11	46529852	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	12648835	46529852	88476664	104	2046											
PATL1	219988	hgsc.bcm.edu	37	chr11	59418265	59418265	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtttttctcctcttgtctcGaacttgtttttcttttgtct	2	24	6	9	1	5	0	0	0	5	0	7	1	5	0	1	1	1	2	1	1	1	8	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_152716	exon13	c.C1546A	p.R516R	TGTCTCGAACTTG	.	91	4	76	0	.	.	T	59418265	G	T	59418265	2	4	15	1	0	0	0	0	0	0	0	1	11522	1066	37	2		2	PATL1	11	59418265	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	12888413	59418265	75588251	105	2047											
AHNAK	79026	hgsc.bcm.edu	37	chr11	62300279	62300279	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctatgtccactctggagcctTtaagtgccacttgagggcct	7	12	10	12	0	1	1	0	1	1	0	2	2	2	2	4	2	2	0	4	2	2	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	AHNAK,NS,carcinoma,0,1	AHNAK	NM_001620	exon5	c.A1610T	p.K537I	GAGCCTTTAAGTG	.	26	2	12	0	.	0	A	62300279	T	A	62300279	3	1	15	1	0	0	0	0	1	0	0	0	411	1841	64	5	16182	5	AHNAK	11	62300279	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	2882014	62300279	72706237	106	2048											
GRM5	2915	hgsc.bcm.edu;bcgsc.ca	37	chr11	88323785	88323785	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgtgagatcatcagtGggccaagaccccagttggca	10	9	11	11	0	2	2	2	1	0	2	2	3	2	2	4	2	1	2	4	2	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000842	exon7	c.C1674A	p.P558P	ATCAGTGGGCCAA	.	51	4	35	0	.	.	T	88323785	G	T	88323785	2	4	15	1	0	0	0	0	0	0	0	1	6841	1335	47	3		3	GRM5	11	88323785	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	26023506	88323785	46682731	107	2049											
USP28	57646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113674003	113674003	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	taggaaagtgcctcttggtaCcttagaaaaatgggagataa	15	10	11	5	0	1	2	0	0	1	2	1	4	1	3	2	3	2	1	2	3	7	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_020886	exon23	c.G2739T	p.K913N	TTGGTACCTTAGA	.	67	36	87	0	.	.	A	113674003	C	A	113674003	3	1	15	1	0	0	0	0	1	0	0	0	17118	521	18	3	506	3	USP28	11	113674003	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	25350218	113674003	21332513	108	2050											
SRPR	6734	hgsc.bcm.edu	37	chr11	126134929	126134929	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaacaactgcaccatggtgcGgccaccatgcttctctggag	10	8	10	13	1	1	0	0	0	1	0	2	1	1	1	3	3	5	2	3	3	2	1	rs142997401	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon11	c.C1450A	p.R484S	TGGTGCGGCCACC	.	44	2	46	0	.	0	T	126134929	G	T	126134929	3	4	15	1	0	0	0	0	1	0	0	0	15218	1116	39	2	482	2	SRPR	11	126134929	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	12460926	126134929	8871587	109	2051											
SRPR	6734	hgsc.bcm.edu	37	chr11	126135636	126135636	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtaagtacttactgctGaacgtccccatcaccttccc	9	12	6	14	1	1	1	1	1	0	0	3	1	3	1	4	1	4	3	4	1	5	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon9	c.C1134A	p.F378L	ACTGCTGAACGTC	.	31	2	18	0	.	0	T	126135636	G	T	126135636	3	4	15	1	0	0	0	0	1	0	0	0	15218	1281	45	3	806	3	SRPR	11	126135636	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	707	126135636	8870880	110	2052											
CD163L1	283316	bcgsc.ca	37	chr12	7519849	7519849	+	Missense_Mutation	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacctgaggttcttgtcccaTgtgggtcctctctcttgagg	4	14	12	11	0	3	2	0	2	3	0	6	3	5	2	3	3	0	1	3	3	0	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	CD163L1	NM_174941	exon18	c.A4262G	p.H1421R	GTCCCATGTGGGT	.	42	4	31	0	.	238	C	7519849	C	C	7519849	3	2	15	1	0	0	0	0	1	0	0	0	2990	1464	51	4	107	4	CD163L1	12	7519849	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09		7519849	126332046	111	2053											
PPFIBP1	8496	hgsc.bcm.edu	37	chr12	27832995	27832995	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gacttgggacagtctaacagGtaagaagagccaactgatag	15	7	12	7	0	1	3	0	1	1	2	1	5	1	4	1	2	3	1	1	2	5	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001198915	exon18	c.1454+1G>T	.	TAACAGGTAAGAA	.	87	4	62	0	.	.	T	27832995	G	T	27832995	5	4	15	1	0	0	0	0	0	0	1	0	12358	1275	44	3	2012	3	PPFIBP1	12	27832995	Splice_Site	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	20313146	27832995	106018900	112	2054											
GXYLT1	283464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	42512815	42512815	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tacttactctgcctttaaagCtatgatgtagctgatcttca	10	16	6	9	0	3	2	1	2	2	0	3	2	3	2	1	0	5	3	1	0	6	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_173601	exon3	c.G473C	p.S158T	TTAAAGCTATGAT	.	100	40	60	0	.	.	G	42512815	C	G	42512815	3	3	15	1	0	0	0	0	1	0	0	0	6944	797	28	5	873	5	GXYLT1	12	42512815	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	14679820	42512815	91339080	113	2055											
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	99106135	99106135	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagattgattatctgacTgaagctcaagttagctgctg	10	13	11	7	0	3	4	2	3	1	1	3	4	3	4	0	1	3	4	0	1	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_181861	exon21	c.T2880C	p.T960T	TCTGACTGAAGCT	.	27	18	31	0	.	.	C	99106135	T	C	99106135	2	2	15	1	0	0	0	0	0	0	0	1	751	1567	55	4		4	APAF1	12	99106135	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	56593320	99106135	34745760	114	2056											
SLC17A8	246213	bcgsc.ca	37	chr12	100774620	100774620	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgttacatcattgctatcatGagtgggctgggattctgcat	8	14	11	8	1	3	1	2	1	1	0	3	2	3	2	0	2	3	4	0	2	2	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC17A8	NM_001145288	exon2	c.G243T	p.M81I	TATCATGAGTGGG	.	45	4	49	0	.	89	T	100774620	T	T	100774620	3	4	15	1	0	0	0	0	1	0	0	0	14478	1290	45	3	249	3	SLC17A8	12	100774620	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1668485	100774620	33077275	115	2057											
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	132530051	132530051	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgccaaacccacagctgaGcctggtcaagacaaccccga	12	6	8	15	1	1	2	1	1	0	1	1	3	1	2	5	1	5	1	5	1	3	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_015409	exon38	c.G6972T	p.E2324D	AGCTGAGCCTGGT	.	26	4	23	0	.	.	T	132530051	G	T	132530051	3	4	15	1	0	0	0	0	1	0	0	0	5177	962	34	3	7115	3	EP400	12	132530051	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	31755431	132530051	1321844	116	2058											
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99554100	99554100	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gctcccctgaaggactttttCaattctggccacaagaaata	12	11	7	11	0	2	2	1	1	1	1	3	3	3	3	3	2	0	1	3	2	5	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001130049	exon13	c.G1438A	p.E480K	CTTTTTCAATTCT	.	68	8	50	0	.	.	T	99554100	C	T	99554100	3	4	15	1	0	0	0	0	1	0	0	0	4721	835	29	3	5008	3	DOCK9	13	99554100	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		99554100	15615778	117	2059											
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	24729730	24729730	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actggaactccccagcgtctGattgtgtgcggactgtgaac	8	10	12	11	2	1	2	0	2	1	0	2	4	2	4	2	2	4	0	2	2	2	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000359	exon4	c.C683A	p.S228X	GCGTCTGATTGTG	.	23	16	33	0	.	.	T	24729730	G	T	24729730	4	4	15	1	0	0	0	0	0	1	0	0	15889	1294	45	3	1818	3	TGM1	14	24729730	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		24729730	82619810	118	2060											
RALGAPA1	253959	hgsc.bcm.edu	37	chr14	36123575	36123575	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaatgagaaattacttacttGaataattttcaagggagaat	18	13	7	3	0	1	3	1	2	0	2	1	5	1	3	0	1	2	0	0	1	8	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_194301	exon29	c.C4087A	p.Q1363K	TTACTTGAATAAT	.	48	4	22	0	.	.	T	36123575	G	T	36123575	3	4	15	1	0	0	0	0	1	0	0	0	13065	1299	45	3	2224	3	RALGAPA1	14	36123575	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	11393845	36123575	71225965	119	2061											
ADAM20	8748	hgsc.bcm.edu	37	chr14	70990328	70990328	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatagtactgtcccaatattGggcataactgcagttgctaa	12	12	9	8	0	0	0	0	0	0	0	1	1	1	0	1	1	4	5	1	1	6	7	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ADAM20,NS,carcinoma,0,1	ADAM20	NM_003814	exon2	c.C1297A	p.Q433K	AATATTGGGCATA	.	47	2	65	0	.	0	T	70990328	G	T	70990328	3	4	15	1	0	0	0	0	1	0	0	0	241	1357	47	3	1037	3	ADAM20	14	70990328	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	34866753	70990328	36359212	120	2062											
CCDC88C	440193	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr14	91883098	91883098	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttacatttgcagcataatttGgttcaaaaagatgccgtcca	13	13	7	8	1	1	1	1	0	0	1	2	1	2	1	2	1	4	3	2	1	4	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001080414	exon2	c.C145A	p.Q49K	TAATTTGGTTCAA	.	38	4	34	0	.	.	T	91883098	G	T	91883098	3	4	15	1	0	0	0	0	1	0	0	0	2885	1357	47	3	6057	3	CCDC88C	14	91883098	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	20892770	91883098	15466442	121	2063											
SCG5	6447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	32988766	32988766	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggataatgttgttgcaaagAagtctgtcccccatttttca	10	15	8	8	0	2	1	1	0	1	1	3	2	3	2	2	1	1	3	2	1	3	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001144757	exon6	c.A595T	p.K199X	GCAAAGAAGTCTG	.	43	20	39	0	.	.	T	32988766	A	T	32988766	4	4	15	1	0	0	0	0	0	1	0	0	13946	247	9	5	613	5	SCG5	15	32988766	Nonsense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09		32988766	69542626	122	2064											
SLC12A6	9990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	34628712	34628712	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatctcactcataggctcaCtccggcttgtttcaggcacg	8	11	8	14	2	4	0	4	0	1	0	6	0	5	0	1	3	0	4	1	3	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_133647	exon1	c.G170A	p.S57N	GGCTCACTCCGGC	.	77	29	32	0	.	.	T	34628712	C	T	34628712	3	4	15	1	0	0	0	0	1	0	0	0	14442	565	20	3	3504	3	SLC12A6	15	34628712	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	1639946	34628712	67902680	123	2065											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43281074	43281074	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cagcatggggactcgaggatCcctttcatcaggtggcactt	8	10	12	11	1	2	0	2	0	0	0	4	3	3	2	1	5	1	2	1	5	0	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_174916	exon35	c.G3940T	p.D1314Y	GAGGATCCCTTTC	.	78	36	45	0	.	.	A	43281074	C	A	43281074	3	1	15	1	0	0	0	0	1	0	0	0	16962	855	30	3	1361	3	UBR1	15	43281074	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	8652362	43281074	59250318	124	2066											
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52517156	52517156	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatcctcatttaaatGttccagatcttccacagaga	11	14	4	12	0	3	2	1	0	2	2	7	3	6	2	4	0	0	1	4	0	2	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018728	exon28	c.C3388T	p.H1130Y	TTAAATGTTCCAG	.	123	44	49	0	.	.	A	52517156	G	A	52517156	3	1	15	1	0	0	0	0	1	0	0	0	10128	1377	48	3	1896	3	MYO5C	15	52517156	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	9236082	52517156	50014236	125	2067											
ZSCAN2	54993	hgsc.bcm.edu	37	chr15	85164298	85164298	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gaagagctttagccggagtgCcaacctcataacccaccaga	13	6	9	13	1	1	2	1	0	0	2	1	4	1	3	5	1	5	1	5	1	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ZSCAN2,NS,lymphoid_neoplasm,0,1	ZSCAN2	NM_181877	exon3	c.C872T	p.A291V	GGAGTGCCAACCT	.	47	2	30	0	.	0	T	85164298	C	T	85164298	3	4	15	1	0	0	0	0	1	0	0	0	18272	739	26	3	968	3	ZSCAN2	15	85164298	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	32647142	85164298	17367094	126	2068											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	88678415	88678415	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tggcaatgagggtatagttgCcattgttgtagtgggtgggc	7	13	17	4	0	0	1	0	1	0	0	0	1	0	1	1	4	1	5	1	4	4	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001243101	exon10	c.G1121C	p.G374A	TAGTTGCCATTGT	.	103	34	43	0	.	.	G	88678415	C	G	88678415	3	3	15	1	0	0	0	0	1	0	0	0	10756	739	26	5	1704	5	NTRK3	15	88678415	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	3514117	88678415	13852977	127	2069											
KIF7	374654	broad.mit.edu	37	chr15	90196148	90196148	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcccctggcagcctctgaGcctccagccccatgccgagg	6	5	11	19	1	1	1	0	1	1	0	2	2	2	1	8	2	5	1	8	2	0	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	KIF7	NM_198525	exon2	c.C14A	p.A5D	CTCTGAGCCTCCA	.	18	3	12	0	.	130	T	90196148	G	T	90196148	3	4	15	1	0	0	0	0	1	0	0	0	8351	971	34	3	4089	3	KIF7	15	90196148	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1517733	90196148	12335244	128	2070											
DNAJA3	9093	hgsc.bcm.edu	37	chr16	4484495	4484495	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaaatgccagccagaaaGagatcaagaaagcctattat	17	7	8	9	1	1	3	1	0	0	3	2	5	1	3	3	0	3	0	3	0	6	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001135110	exon2	c.G322T	p.E108X	CAGAAAGAGATCA	.	62	4	48	0	.	.	T	4484495	G	T	4484495	4	4	15	1	0	0	0	0	0	1	0	0	4640	943	33	3	328	3	DNAJA3	16	4484495	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		4484495	85870258	129	2071											
SMG1	23049	broad.mit.edu	37	chr16	18882689	18882689	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaacagagtcttactgtTggctaaaaggcctttgcaaa	16	10	8	7	0	1	1	0	0	1	1	1	1	1	1	1	2	3	3	1	2	7	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SMG1	NM_015092	exon16	c.A2299G	p.N767D	TACTGTTGGCTAA	.	301	7	183	0	.	401	C	18882689	T	C	18882689	3	2	15	1	0	0	0	0	1	0	0	0	14849	1812	63	4	8878	4	SMG1	16	18882689	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	14398194	18882689	71472064	130	2072											
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28993745	28993745	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgggtgtggagatcagccGccggctccgccactccaacc	6	6	12	17	3	1	1	1	0	0	1	3	2	3	1	7	3	2	1	7	3	1	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001142448	exon9	c.G1034A	p.R345H	TCAGCCGCCGGCT	.	31	9	27	0	.	.	A	28993745	G	A	28993745	3	1	15	1	0	0	0	0	1	0	0	0	15130	1087	38	1	1064	1	SPNS1	16	28993745	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	10111056	28993745	61361008	131	2073											
PSMB10	5699	hgsc.bcm.edu	37	chr16	67968568	67968568	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccaggcacaaagtggtagcgGccagacctgggagggaggag	11	3	18	9	1	0	1	0	0	0	1	0	4	0	4	3	6	1	2	3	6	2	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PSMB10,NS,carcinoma,0,2	PSMB10	NM_002801	exon8	c.C717A	p.G239G	GTAGCGGCCAGAC	.	42	2	43	0	.	0	T	67968568	G	T	67968568	2	4	15	1	0	0	0	0	0	0	0	1	12724	1190	42	3		3	PSMB10	16	67968568	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	38974823	67968568	22386185	132	2074											
GLG1	2734	hgsc.bcm.edu	37	chr16	74496020	74496020	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgcagctggagctgaGgatccaggcggtagtccagg	9	6	17	9	1	0	1	0	1	0	0	2	3	2	3	2	5	4	5	2	5	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_001145667	exon22	c.C3008A	p.P1003H	AGCTGAGGATCCA	.	45	2	38	0	.	106	T	74496020	G	T	74496020	3	4	15	1	0	0	0	0	1	0	0	0	6478	1000	35	3	631	3	GLG1	16	74496020	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	6527452	74496020	15858733	133	2075											
MYH10	4628	hgsc.bcm.edu	37	chr17	8408136	8408136	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccgtgaagccttctcggattCaaagtcttcctgaagttcag	9	12	9	11	2	4	2	2	2	2	0	6	3	5	3	3	1	1	1	3	1	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MYH10,NS,carcinoma,0,1	MYH10	NM_001256012	exon28	c.G3475A	p.E1159K	CGGATTCAAAGTC	.	30	2	29	0	.	0	T	8408136	C	T	8408136	3	4	15	1	0	0	0	0	1	0	0	0	10078	835	29	3	2612	3	MYH10	17	8408136	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09		8408136	72787074	134	2076											
NCOR1	9611	hgsc.bcm.edu	37	chr17	15971432	15971432	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagacttgttagaagaaattGtaactggaaaaaaagagcca	19	9	9	4	0	0	4	0	0	0	4	0	5	0	5	1	1	2	2	1	1	8	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001190440	exon31	c.C4565A	p.T1522K	GAAATTGTAACTG	.	84	4	54	0	.	.	T	15971432	G	T	15971432	3	4	15	1	0	0	0	0	1	0	0	0	10282	1377	48	3	2865	3	NCOR1	17	15971432	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	7563296	15971432	65223778	135	2077											
CDK12	51755	hgsc.bcm.edu	37	chr17	37665977	37665977	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcaaatcaaactagcaGattttggacttgctcggctc	10	11	11	9	1	1	1	1	0	0	1	3	2	1	2	0	3	3	4	0	3	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016507	exon7	c.G2629T	p.D877Y	CTAGCAGATTTTG	.	89	4	52	0	.	.	T	37665977	G	T	37665977	3	4	15	1	0	0	0	0	1	0	0	0	3150	942	33	3	2655	3	CDK12	17	37665977	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	21694545	37665977	43529233	136	2078											
TOP2A	7153	hgsc.bcm.edu	37	chr17	38560515	38560515	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaacctttctctgaccTggtttcaaacctttaaaatg	14	13	4	10	0	2	1	1	1	1	0	3	1	2	1	3	1	3	1	3	1	6	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001067	exon19	c.A2172G	p.P724P	CTGACCTGGTTTC	.	93	4	66	0	.	.	C	38560515	T	C	38560515	2	2	15	1	0	0	0	0	0	0	0	1	16426	1567	55	4		4	TOP2A	17	38560515	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	894538	38560515	42634695	137	2079											
TTC25	83538	broad.mit.edu	37	chr17	40100452	40100452	+	RNA	DEL	A	A	-																															caagagtgaaactccgtctcAaaaaaaaaaaaaaaaaatta																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	TTC25	.	.	.	.	CGTCTCAAAAAAA	.	8	2	6	0	.	37	-	40100452	A	-	40100452	6	5	15	0	1	1	0	1	0	0	0	0	16755	145	5	0		0	TTC25	17	40100452	RNA	DEL	A	TCGA-W5-AA2U-01A-11D-A417-09	1539937	40100452	41094758	138	2080											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42293340	42293340	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggatcaattctgtcaaTgtacggaacttcctcacctg	10	12	8	11	2	4	0	3	0	1	0	6	3	5	2	2	2	2	1	2	2	4	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014233	exon4	c.A252C	p.T84T	TGTCAATGTACGG	.	57	7	31	0	.	.	G	42293340	T	G	42293340	2	3	15	1	0	0	0	0	0	0	0	1	16970	1451	51	4		4	UBTF	17	42293340	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	2192888	42293340	38901870	139	2081											
HOXB6	3216	hgsc.bcm.edu	37	chr17	46673137	46673137	+	RNA	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttttcacatctttattattGttgttgttgttgttattatt	6	26	6	3	0	2	0	1	0	1	0	2	0	2	0	0	0	0	6	0	0	4	13	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	ATTATTGTTGTTG	.	36	4	21	0	.	.	A	46673137	G	A	46673137	1	1	15	0	1	0	0	0	0	0	0	0	7346	1392	48	3		3	HOXB6	17	46673137	RNA	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	4379797	46673137	34522073	140	2082											
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66878815	66878815	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatcttcatcctctccttcTggttcttctggattttgaca	6	18	5	12	0	6	1	1	1	5	0	8	2	7	2	2	2	0	1	2	2	0	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_007168	exon28	c.A3633C	p.P1211P	TCCTTCTGGTTCT	.	59	6	38	0	.	.	G	66878815	T	G	66878815	2	3	15	1	0	0	0	0	0	0	0	1	38	1567	55	4		4	ABCA8	17	66878815	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	20205678	66878815	14316395	141	2083											
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	80151670	80151670	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttccttcttcctggttagCtgcacagagtgaagtttatc	7	16	8	10	0	2	2	0	1	2	1	5	2	4	2	2	1	2	4	2	1	3	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198082	exon6	c.G813A	p.Q271Q	GGTTAGCTGCACA	.	76	4	38	0	.	.	T	80151670	C	T	80151670	2	4	15	1	0	0	0	0	0	0	0	1	2847	796	28	3		3	CCDC57	17	80151670	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	13272855	80151670	1043540	142	2084											
UHRF1	29128	hgsc.bcm.edu	37	chr19	4954681	4954681	+	Silent	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtggcccgagcagggcGggtccccgcgccggacatcc	5	3	18	15	5	0	0	0	0	0	0	2	3	2	2	5	6	1	1	5	6	0	0	rs80224821	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	p.A672A	.	.	CAGGGCGGGTCCC	.	42	5	30	0	.	.	C	4954681	G	C	4954681	2	2	15	1	0	0	0	0	0	0	0	1	17027	1103	39	5		5	UHRF1	19	4954681	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		4954681	54174302	143	2085											
ACSBG2	81616	hgsc.bcm.edu	37	chr19	6187825	6187825	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagtgggtcatcttggaGaaggacttttccatctatgg	11	12	12	6	0	3	1	1	0	2	1	4	4	4	2	1	4	0	0	1	4	4	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ACSBG2,NS,carcinoma,0,1	ACSBG2	NM_030924	exon13	c.G1896T	p.E632D	CTTGGAGAAGGAC	.	39	2	30	0	.	0	T	6187825	G	T	6187825	3	4	15	1	0	0	0	0	1	0	0	0	174	933	33	3	1942	3	ACSBG2	19	6187825	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1233144	6187825	52941158	144	2086											
SH2D3A	10045	hgsc.bcm.edu	37	chr19	6755188	6755188	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggagggtgtccgggggggcTtcgttggtgccttggcttga	3	11	20	7	2	0	1	0	1	0	0	2	2	1	2	2	7	1	3	2	7	0	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SH2D3A,NS,carcinoma,0,1	SH2D3A	NM_005490	exon5	c.A635G	p.K212R	GGGGGCTTCGTTG	.	79	3	60	0	.	0	C	6755188	T	C	6755188	3	2	15	1	0	0	0	0	1	0	0	0	14287	1609	56	4	1119	4	SH2D3A	19	6755188	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	567363	6755188	52373795	145	2087											
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	8467101	8467101	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	catcgtcatcatgctggtggGcaacaagagtgacctgcgcc	9	8	12	12	2	2	2	2	1	0	1	3	2	2	2	2	2	3	2	2	2	2	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004218	exon3	c.G368A	p.G123D	TGGTGGGCAACAA	.	25	13	11	0	.	.	A	8467101	G	A	8467101	3	1	15	1	0	0	0	0	1	0	0	0	12944	1203	42	3	378	3	RAB11B	19	8467101	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1711913	8467101	50661882	146	2088											
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8528546	8528546	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctaaacaagcatagtctgagCggaagaccactgaaagtcaa	17	6	9	9	1	2	3	1	2	1	1	2	4	2	4	1	1	3	1	1	1	7	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HNRNPM,caecum,carcinoma,0,1	HNRNPM	NM_031203	exon5	c.C414T	p.S138S	TCTGAGCGGAAGA	.	50	2	33	0	.	0	T	8528546	C	T	8528546	2	4	15	1	0	0	0	0	0	0	0	1	7312	767	27	1		1	HNRNPM	19	8528546	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	61445	8528546	50600437	147	2089											
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10568639	10568639	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgaccaagaccctcccagcCgcccccgccccctgtaccac	7	3	7	24	3	0	1	0	0	0	1	1	2	1	1	9	0	2	1	9	0	2	1	rs200742358	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001111307	exon8	c.C962T	p.P321L	CCCAGCCGCCCCC	.	59	22	37	0	.	.	T	10568639	C	T	10568639	3	4	15	1	0	0	0	0	1	0	0	0	11686	652	23	1	1449	1	PDE4A	19	10568639	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	2040093	10568639	48560344	148	2090											
ZNF676	163223	bcgsc.ca	37	chr19	22363737	22363737	+	Missense_Mutation	SNP	C	G	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	gggttgagacgctactaaatCctttgccacattcttcacat	10	13	7	11	1	2	1	1	1	1	1	3	2	3	1	2	1	2	2	2	1	3	6	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	ZNF676	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	71	8	58	1	.	146	G	22363737	G	G	22363737	3	3	15	1	0	0	0	0	1	0	0	0	18140	855	30	5	988	5	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	11795098	22363737	36765246	149	2091											
ZNF527	84503	hgsc.bcm.edu	37	chr19	37879856	37879856	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcacagtggagaaaaaccatAtgcatgcaatgactgtggaa	16	8	10	7	0	1	2	1	1	0	1	1	4	1	3	1	2	3	2	1	2	5	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_032453	exon5	c.A905G	p.Y302C	AACCATATGCATG	.	40	3	30	1	.	78	G	37879856	A	G	37879856	3	3	15	1	0	0	0	0	1	0	0	0	18025	449	16	4	919	4	ZNF527	19	37879856	Missense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	15516119	37879856	21249127	150	2092											
RYR1	6261	hgsc.bcm.edu	37	chr19	39062862	39062862	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggtgtctgagcctcctGcatacactggtggcctttct	4	13	11	13	1	2	1	0	1	2	0	3	1	3	1	3	3	4	1	3	3	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	RYR1,NS,carcinoma,0,2	RYR1	NM_000540	exon95	c.G13950A	p.L4650L	CCTCCTGCATACA	.	39	2	32	0	.	0	A	39062862	G	A	39062862	2	1	15	1	0	0	0	0	0	0	0	1	13820	1306	46	3		3	RYR1	19	39062862	Silent	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	1183006	39062862	20066121	151	2093											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41798301	41798301	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cgcagtggagttcaacttcgGacagagagcagagccctact	11	7	12	11	2	1	2	1	0	0	2	2	5	1	4	1	2	4	3	1	2	2	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	HNRNPUL1	NM_007040	exon8	c.G1151T	p.G384V	ACTTCGGACAGAG	.	42	3	34	0	.	73	T	41798301	G	T	41798301	3	4	15	1	0	0	0	0	1	0	0	0	7315	1174	41	3	1181	3	HNRNPUL1	19	41798301	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2735439	41798301	17330682	152	2094											
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	45262071	45262071	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagcgccaacacctcccccGagagcagcagccgcctcagc	9	2	11	19	3	1	1	1	0	0	1	2	3	2	2	6	1	6	2	6	1	1	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005178	exon8	c.G1150T	p.E384X	TCCCCCGAGAGCA	.	20	8	14	0	.	.	T	45262071	G	T	45262071	4	4	15	1	0	0	0	0	0	1	0	0	1373	1059	37	2	1180	2	BCL3	19	45262071	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3463770	45262071	13866912	153	2095											
SPHK2	56848	hgsc.bcm.edu	37	chr19	49132111	49132111	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtggatatccagagcgagcGcttcagggccttgggcagtg	7	9	16	9	2	1	1	1	0	0	1	2	3	2	2	2	3	2	2	2	3	1	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SPHK2,caecum,carcinoma,0,1	SPHK2	NM_020126	exon7	c.G1046T	p.R349L	GCGAGCGCTTCAG	.	47	2	45	0	.	0	T	49132111	G	T	49132111	3	4	15	1	0	0	0	0	1	0	0	0	15103	1087	38	2	1068	2	SPHK2	19	49132111	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	3870040	49132111	9996872	154	2096											
BRSK1	84446	bcgsc.ca	37	chr19	55817627	55817627	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctacctcgctcagatccccaGcctgagtcacagtgtgctgt	7	10	9	15	1	2	2	2	1	0	1	4	2	3	2	4	0	3	2	4	0	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BRSK1	NM_032430	exon17	c.G1898T	p.S633I	TCCCCAGCCTGAG	.	54	4	30	0	.	192	T	55817627	T	T	55817627	3	4	15	1	0	0	0	0	1	0	0	0	1525	971	34	3	1964	3	BRSK1	19	55817627	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	6685516	55817627	3311356	155	2097											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	58564141	58564141	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcacccccagagcttcatTgtcaataaagaggagggcgc	11	9	10	11	1	3	2	3	0	0	2	3	3	3	3	2	2	1	1	2	2	3	4	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_177980	exon9	c.T1206C	p.I402I	CTTCATTGTCAAT	.	100	34	60	0	.	.	C	58564141	T	C	58564141	2	2	15	1	0	0	0	0	0	0	0	1	3132	1800	63	4		4	CDH26	20	58564141	Silent	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09		58564141	4461379	156	2098											
HRH3	11255	hgsc.bcm.edu;broad.mit.edu	37	chr20	60791534	60791534	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccgccacccccgagggtcGcctccccggcctcagcgcct	4	4	10	23	5	1	0	1	0	0	0	3	1	2	0	9	2	1	0	9	2	0	0	rs374571202		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_007232	exon3	c.C866T	p.A289V	AGGGTCGCCTCCC	.	16	7	14	0	.	.	A	60791534	G	A	60791534	3	1	15	1	0	0	0	0	1	0	0	0	7398	1087	38	1	475	1	HRH3	20	60791534	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2227393	60791534	2233986	157	2099											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	27277339	27277339	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcaagcggttctgatacctgGtcgagtggtcagtcctcggt	6	12	13	10	3	3	1	2	1	1	0	6	2	4	1	2	4	2	1	2	4	2	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000484	exon15	c.C1960G	p.P654A	TACCTGGTCGAGT	.	25	13	32	0	.	.	C	27277339	G	C	27277339	3	2	15	1	0	0	0	0	1	0	0	0	812	1261	44	5	368	5	APP	21	27277339	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		27277339	20852556	158	2100											
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29913065	29913066	+	Missense_Mutation	DNP	GC	GC	TA																															agtagagattggtgtccccaGccagtcccgcatccacaatg																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001002878	exon18	c.G1633T	p.A545Y	CCCCAGCCAGTCC	.	71	10	37	0	.	.	TA	29913066	GC	TA	29913065	3	4	15	1	0	0	0	0	1	0	0	0	15928	971	34	3	433	3	THOC5	22	29913065	Missense_Mutation	DNP	GC	TCGA-W5-AA2U-01A-11D-A417-09		29913065	21391501	159	2101											
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	2799129	2799129	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctgtttcccagatctccatcGaagagaaggtgaaggaattg	12	10	11	8	1	1	3	0	1	1	2	4	6	2	4	2	2	0	1	2	2	4	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_003918	exon12	c.G1381A	p.E461K	TCCATCGAAGAGA	.	44	18	23	0	.	.	A	2799129	G	A	2799129	3	1	15	1	0	0	0	0	1	0	0	0	6947	1059	37	1	1423	1	GYG2	23	2799129	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09		2799129	152471431	160	2102											
CLCN4	1183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	10176631	10176631	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tatttacctttggcatgaagGtaagtgaaagggaaggaaga	15	10	13	3	0	0	3	0	2	0	1	0	5	0	5	1	4	1	2	1	4	7	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001830	exon9	c.1389+1G>A	.	ATGAAGGTAAGTG	.	49	7	61	0	.	.	A	10176631	G	A	10176631	5	1	15	1	0	0	0	0	0	0	1	0	3488	1275	44	3	1416	3	CLCN4	23	10176631	Splice_Site	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	7377502	10176631	145093929	161	2103											
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	14748367	14748367	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtcgttttaattttagCggttatgggatgggtcactg	9	15	13	4	2	1	0	1	0	0	0	2	2	1	1	0	3	1	2	0	3	4	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001118885	exon10	c.C1119T	p.S373S	TTTTAGCGGTTAT	.	89	29	75	0	.	.	T	14748367	C	T	14748367	2	4	15	1	0	0	0	0	0	0	0	1	6497	767	27	1		1	GLRA2	23	14748367	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	4571736	14748367	140522193	162	2104											
POLA1	5422	hgsc.bcm.edu	37	chrX	24741359	24741359	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaaaatatcgagcgaaCgctttacttccttccccgtg	10	11	9	11	4	0	1	0	1	0	0	3	3	2	1	3	1	3	1	3	1	5	5	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016937	exon11	c.C1157T	p.T386M	AGCGAACGCTTTA	.	91	4	51	0	.	.	T	24741359	C	T	24741359	3	4	15	1	0	0	0	0	1	0	0	0	12235	536	19	1	1199	1	POLA1	23	24741359	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	9992992	24741359	130529201	163	2105											
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	37028705	37028705	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgtcccatctccgcccagAgcctcccaagcctcgggttt	6	9	9	17	2	1	1	0	0	1	1	5	1	3	1	6	1	2	1	6	1	1	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001013736	exon1	c.A2222T	p.E741V	GCCCAGAGCCTCC	.	219	14	149	0	.	.	T	37028705	A	T	37028705	3	4	15	1	0	0	0	0	1	0	0	0	5607	304	11	5	2224	5	FAM47C	23	37028705	Missense_Mutation	SNP	A	TCGA-W5-AA2U-01A-11D-A417-09	12287346	37028705	118241855	164	2106											
BCOR	54880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	39933623	39933623	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	caggagagctgtgtcccccgGcaggccactggtgaccgcct	6	6	14	15	2	0	2	0	1	0	1	1	3	1	2	5	4	1	2	5	4	0	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BCOR	NM_001123385	exon4	c.C976A	p.P326T	CCCCCGGCAGGCC	.	45	5	32	0	.	351	T	39933623	G	T	39933623	3	4	15	1	0	0	0	0	1	0	0	0	1384	1203	42	3	4339	3	BCOR	23	39933623	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2904918	39933623	115336937	165	2107											
ZNF157	7712	hgsc.bcm.edu	37	chrX	47272743	47272743	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgtgggaaaatcttcaGtatgaagaaatccctttgtc	13	13	9	6	0	2	3	1	2	1	1	4	4	3	4	1	1	0	1	1	1	6	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_003446	exon4	c.G1271T	p.S424I	TCTTCAGTATGAA	.	79	4	43	0	.	.	T	47272743	G	T	47272743	3	4	15	1	0	0	0	0	1	0	0	0	17795	1029	36	3	1285	3	ZNF157	23	47272743	Missense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	7339120	47272743	107997817	166	2108											
CLCN5	1184	hgsc.bcm.edu	37	chrX	49840560	49840560	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacattgttgctggaactctGagcatgtcacctttgaagag	11	12	10	8	0	2	3	1	2	1	1	2	4	2	4	1	1	4	3	1	1	3	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001127898	exon7	c.G526T	p.E176X	AACTCTGAGCATG	.	97	4	46	0	.	.	T	49840560	G	T	49840560	4	4	15	1	0	0	0	0	0	1	0	0	3489	1291	45	3	544	3	CLCN5	23	49840560	Nonsense_Mutation	SNP	G	TCGA-W5-AA2U-01A-11D-A417-09	2567817	49840560	105430000	167	2109											
SRPX2	27286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	99921900	99921900	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgtcagtccagccgcCagtggtcaggttcaccacca	7	8	12	14	1	4	0	3	0	1	0	5	0	5	0	5	3	1	1	5	3	0	1	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014467	exon8	c.C931A	p.Q311K	AGCCGCCAGTGGT	.	60	27	44	0	.	.	A	99921900	C	A	99921900	3	1	15	1	0	0	0	0	1	0	0	0	15221	595	21	3	957	3	SRPX2	23	99921900	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	50081340	99921900	55348660	168	2110											
GUCY2F	2986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	108641914	108641914	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctctcaacagttcaggggcCgtccacagcagctctaaaaa	12	7	9	13	1	3	0	2	0	2	0	5	0	4	0	2	2	3	4	2	2	4	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001522	exon11	c.G2139T	p.T713T	AGGGGCCGTCCAC	.	56	8	51	0	.	.	A	108641914	C	A	108641914	2	1	15	1	0	0	0	0	0	0	0	1	6939	639	23	2		2	GUCY2F	23	108641914	Silent	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	8720014	108641914	46628646	169	2111											
ELF4	2000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	129201166	129201166	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agagctgggccctgctggtcCagcccctgtgaccgtgggtg	4	8	16	13	1	0	2	0	1	0	1	1	2	1	2	5	3	3	2	5	3	0	0	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001421	exon9	c.G1522T	p.G508X	CTGGTCCAGCCCC	.	66	19	29	0	.	.	A	129201166	C	A	129201166	4	1	15	1	0	0	0	0	0	1	0	0	5084	603	21	3	473	3	ELF4	23	129201166	Nonsense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	20559252	129201166	26069394	170	2112											
FAM127A	8933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	134166535	134166535	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcgataccgaccgactccCggagttcatcgtgcagacgg	8	6	13	14	7	1	1	1	0	0	1	3	5	2	2	3	3	2	2	3	3	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001078171	exon1	c.C122A	p.P41Q	GACTCCCGGAGTT	.	101	28	87	0	.	.	A	134166535	C	A	134166535	3	1	15	1	0	0	0	0	1	0	0	0	5462	652	23	2	124	2	FAM127A	23	134166535	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	4965369	134166535	21104025	171	2113											
ZNF449	203523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	134494603	134494603	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aatgcactgtatgtaaaaagCgattcactcggcggtcacat	13	10	9	9	3	2	0	2	0	0	0	3	1	2	0	0	2	2	3	0	2	5	3	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_152695	exon5	c.C1159T	p.R387X	AAAAAGCGATTCA	.	75	32	28	0	.	.	T	134494603	C	T	134494603	4	4	15	1	0	0	0	0	0	1	0	0	17977	760	27	1	1173	1	ZNF449	23	134494603	Nonsense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	328068	134494603	20775957	172	2114											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	140995729	140995729	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	cgagtctttccaagagttccCctgagagtcctctccagagt	8	11	9	13	1	2	3	0	1	2	3	6	5	5	3	5	0	0	1	5	0	1	2	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005462	exon4	c.C2539A	p.P847T	AGTTCCCCTGAGA	.	71	22	43	0	.	.	A	140995729	C	A	140995729	3	1	15	1	0	0	0	0	1	0	0	0	9230	623	22	3	2545	3	MAGEC1	23	140995729	Missense_Mutation	SNP	C	TCGA-W5-AA2U-01A-11D-A417-09	6501126	140995729	14274831	173	2115											
MAGEA1	4100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	152482527	152482527	+	Frame_Shift_Del	DEL	C	C	-																															ggagtggccggtggggtctgCttccttcacgtcaatgccaa																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004988	exon3	c.485delC	p.A162fs	GGTCTGCTTCCTT	.	71	24	63	0	.	.	-	152482527	C	-	152482527	7	5	15	1	0	1	0	1	0	0	0	0	9209	797	28	0	449	0	MAGEA1	23	152482527	Frame_Shift_Del	DEL	C	TCGA-W5-AA2U-01A-11D-A417-09	11486798	152482527	2788033	174	2116	9	2									
MAGEA1	4100	bcgsc.ca	37	chrX	152482528	152482528	+	Missense_Mutation	SNP	T	G	G																															gagtggccggtggggtctgcTtccttcacgtcaatgccaaa																								novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	MAGEA1	NM_004988	exon3	c.A483C	p.E161D	GTCTGCTTCCTTC	.	69	24	65	0	.	57	G	152482528	G	G	152482528	3	3	15	1	0	0	0	0	1	0	0	0	9209	1606	56	4	450	4	MAGEA1	23	152482528	Missense_Mutation	SNP	T	TCGA-W5-AA2U-01A-11D-A417-09	1	152482528	2788032	175	2117	9	2									
CHD5	26038	bcgsc.ca	37	chr1	6188616	6188616	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggccaagttcccccctttggAggactggacatcagggatgg	8	8	14	11	0	1	0	1	0	0	0	2	4	2	4	4	6	0	1	4	6	1	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CHD5	NM_015557	exon24	c.T3673C	p.S1225P	CTTTGGAGGACTG	.	14	3	53	0	.	267	G	6188616	G	G	6188616	3	3	16	1	0	0	0	0	1	0	0	0	3350	304	11	4	2263	4	CHD5	1	6188616	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09		6188616	243062005	1	2118											
DNAJC16	23341	bcgsc.ca	37	chr1	15886125	15886125	+	Silent	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgttccatgaactctgcccTgtgaaacggtcgcatcgaca	9	11	9	12	3	1	2	0	2	1	0	4	3	2	2	2	1	3	2	2	1	2	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	DNAJC16	NM_015291	exon8	c.T1128C	p.P376P	CTGCCCTGTGAAA	.	23	3	50	0	.	59	C	15886125	C	C	15886125	2	2	16	1	0	0	0	0	0	0	0	1	4662	1567	55	4		4	DNAJC16	1	15886125	Silent	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09	9697509	15886125	233364496	2	2119											
SPOCD1	90853	hgsc.bcm.edu	37	chr1	32280314	32280314	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gccccttgcctcctccatttCtttcttaccctcacagggac	5	13	5	18	0	3	0	1	0	2	0	5	1	5	1	6	1	2	0	6	1	1	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SPOCD1,colon,carcinoma,0,1	SPOCD1	NM_144569	exon2	c.G621A	p.K207K	CCATTTCTTTCTT	.	21	2	53	0	.	0	T	32280314	C	T	32280314	2	4	16	1	0	0	0	0	0	0	0	1	15134	912	32	3		3	SPOCD1	1	32280314	Silent	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	16394189	32280314	216970307	3	2120											
THRAP3	9967	hgsc.bcm.edu	37	chr1	36766611	36766611	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggagagcaccacgggctttGacaaatcaagactggggacc	13	5	13	10	1	1	3	1	1	0	2	1	5	1	4	2	4	1	2	2	4	2	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	THRAP3,NS,carcinoma,0,1	THRAP3	NM_005119	exon10	c.G2428T	p.D810Y	GGCTTTGACAAAT	.	27	3	54	0	.	0	T	36766611	G	T	36766611	3	4	16	1	0	0	0	0	1	0	0	0	15934	1290	45	3	2458	3	THRAP3	1	36766611	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	4486297	36766611	212484010	4	2121											
RAB3B	5865	broad.mit.edu	37	chr1	52385603	52385603	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtgggccttgcctagCatgagcagttctgctgcagc	7	9	15	10	0	1	1	0	1	1	0	1	2	1	2	2	3	6	5	2	3	2	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	RAB3B	NM_002867	exon5	c.G656T	p.C219F	GCCTAGCATGAGC	.	3	2	13	0	.	22	A	52385603	C	A	52385603	3	1	16	1	0	0	0	0	1	0	0	0	12984	710	25	3	7	3	RAB3B	1	52385603	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	15618992	52385603	196865018	5	2122											
PALMD	54873	hgsc.bcm.edu	37	chr1	100152323	100152323	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agaaactaaagtcaattgagCggacaacagaagacattata	20	7	8	6	1	1	4	1	1	0	3	1	5	1	5	0	1	3	0	0	1	8	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PALMD,NS,carcinoma,0,2	PALMD	NM_017734	exon4	c.C343T	p.R115W	ATTGAGCGGACAA	.	35	2	133	0	.	0	T	100152323	C	T	100152323	3	4	16	1	0	0	0	0	1	0	0	0	11458	759	27	1	357	1	PALMD	1	100152323	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	47766720	100152323	149098298	6	2123											
COL11A1	1301	hgsc.bcm.edu;bcgsc.ca	37	chr1	103455077	103455077	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attttctctatacttactctGtcaccttttagacccatgtc	8	18	3	12	0	3	1	1	0	2	1	5	1	3	1	2	0	2	0	2	0	4	7	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_080629	exon29	c.C2427T	p.D809D	TACTCTGTCACCT	.	79	4	225	0	.	.	A	103455077	G	A	103455077	2	1	16	1	0	0	0	0	0	0	0	1	3690	1368	48	3		3	COL11A1	1	103455077	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	3302754	103455077	145795544	7	2124											
ZNF697	90874	bcgsc.ca	37	chr1	120166656	120166656	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gtcagactcagacagtcctgGgaacatcgccatgtcagcta	11	8	10	12	1	3	2	3	0	0	2	5	3	4	3	2	1	2	1	2	1	2	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ZNF697	NM_001080470	exon3	c.C310T	p.P104S	GTCCTGGGAACAT	.	14	3	33	0	.	26	A	120166656	A	A	120166656	3	1	16	1	0	0	0	0	1	0	0	0	18156	1232	43	3	1331	3	ZNF697	1	120166656	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	16711579	120166656	129083965	8	2125											
ATP1A2	477	hgsc.bcm.edu	37	chr1	160097563	160097563	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtcatcttcctcatcGgcatcatagtggccaacgtg	9	10	10	12	2	4	0	3	0	1	0	6	0	5	0	2	3	1	2	2	3	2	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ATP1A2,NS,carcinoma,0,2	ATP1A2	NM_000702	exon8	c.G970A	p.G324S	CTCATCGGCATCA	.	37	2	22	0	.	0	A	160097563	G	A	160097563	3	1	16	1	0	0	0	0	1	0	0	0	1128	1116	39	1	1000	1	ATP1A2	1	160097563	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	39930907	160097563	89153058	9	2126											
CACNA1E	777	ucsc.edu	37	chr1	181765857	181765857	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggagcggggacgatcaaaaGagcgaaagcatcttctctct	12	7	13	9	3	4	1	1	0	3	1	5	5	4	3	0	3	3	1	0	3	3	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CACNA1E	NM_001205293	exon47	c.G6262T	p.E2088X	TCAAAAGAGCGAA	.	27	4	18	0	.	778	T	181765857	G	T	181765857	4	4	16	1	0	0	0	0	0	1	0	0	2560	943	33	3	6315	3	CACNA1E	1	181765857	Nonsense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	21668294	181765857	67484764	10	2127											
ZC3H11A	9877	broad.mit.edu	37	chr1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggatgattttgagaaactaaTatgggagatttcaggaggca	14	11	13	3	0	1	3	1	2	0	2	1	7	1	5	0	4	1	1	0	4	3	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	AACTAATATGGGA	.	394	6	283	1	.	71	C	203821424	T	C	203821424	3	2	16	1	0	0	0	0	1	0	0	0	17619	1406	49	4	2392	4	ZC3H11A	1	203821424	Missense_Mutation	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09	22055567	203821424	45429197	11	2128											
C1orf186	440712	hgsc.bcm.edu	37	chr1	206243207	206243207	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaggcctgcaggaagaGggacaccaccgcgatcacta	13	3	13	12	2	1	1	1	0	0	1	1	5	1	3	3	3	2	2	3	3	3	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	C1orf186,NS,carcinoma,0,1	C1orf186	NM_001007544	exon3	c.C55A	p.L19I	GGAAGAGGGACAC	.	46	2	28	0	.	0	T	206243207	G	T	206243207	3	4	16	1	0	0	0	0	1	0	0	0	2033	1000	35	3	479	3	C1orf186	1	206243207	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	2421783	206243207	43007414	12	2129											
LAMB3	3914	hgsc.bcm.edu	37	chr1	209791986	209791986	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgctgacctcctggatagtgGctgcatcagtgtcggggtct	5	11	14	11	2	2	1	1	1	1	0	4	2	3	2	2	4	1	3	2	4	1	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LAMB3,NS,malignant_melanoma,0,1	LAMB3	NM_000228	exon19	c.C2720T	p.A907V	ATAGTGGCTGCAT	.	26	2	16	0	.	0	A	209791986	G	A	209791986	3	1	16	1	0	0	0	0	1	0	0	0	8651	1203	42	3	818	3	LAMB3	1	209791986	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	3548779	209791986	39458635	13	2130											
LYPLAL1	127018	hgsc.bcm.edu	37	chr1	219384997	219384997	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtttaccatgagctaaGcaaaactgagttagacatat	17	11	7	6	0	0	3	0	2	0	1	0	3	0	3	1	0	4	4	1	0	7	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_138794	exon5	c.G641T	p.S214I	AGCTAAGCAAAAC	.	94	4	70	0	.	.	T	219384997	G	T	219384997	3	4	16	1	0	0	0	0	1	0	0	0	9164	971	34	3	659	3	LYPLAL1	1	219384997	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	9593011	219384997	29865624	14	2131											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	225607439	225607439	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatttttatgaggtgcgTcatttctctcaatatgctca	8	18	8	7	1	4	1	3	1	1	0	5	1	4	1	0	1	2	2	0	1	4	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LBR,NS,carcinoma,0,1	LBR	NM_194442	exon4	c.A428G	p.D143G	GGTGCGTCATTTC	.	99	5	63	1	.	0	C	225607439	T	C	225607439	3	2	16	1	0	0	0	0	1	0	0	0	8691	1667	58	4	1463	4	LBR	1	225607439	Missense_Mutation	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09	6222442	225607439	23643182	15	2132											
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248263072	248263072	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgccactctctctattatcCtatccgcatgagtaaaatga	11	13	5	12	1	2	2	0	2	2	0	5	2	4	2	3	0	1	2	3	0	5	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_175911	exon3	c.C395T	p.P132L	ATTATCCTATCCG	.	69	11	37	0	.	.	T	248263072	C	T	248263072	3	4	16	1	0	0	0	0	1	0	0	0	11054	681	24	3	397	3	OR2L13	1	248263072	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	22655633	248263072	987549	16	2133											
TTN	7273	hgsc.bcm.edu	37	chr2	179452261	179452261	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acctaatactctgacatttaCgaatacagccttttctcctg	11	14	4	12	1	2	1	0	1	2	0	3	2	2	1	3	0	4	0	3	0	5	7	rs371286595		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TTN_ENST00000359218,NS,carcinoma,0,5	TTN_ENST00000359218	NM_001267550	exon306	c.G63775A	p.V21259I	CATTTACGAATAC	.	18	2	30	0	.	0	T	179452261	C	T	179452261	3	4	16	1	0	0	0	0	1	0	0	0	16797	536	19	1	44432	1	TTN	2	179452261	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		179452261	63747112	17	2134											
GTF3C3	9330	hgsc.bcm.edu	37	chr2	197657764	197657764	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttgctcaggtgtttcttcCtcctcctcctcctcctcctc	1	16	6	18	0	2	0	1	0	1	0	10	0	9	0	7	2	1	3	7	2	0	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GTF3C3,colon,carcinoma,0,1	GTF3C3	NM_001206774	exon3	c.G327T	p.E109D	TTCTTCCTCCTCC	.	17	2	27	0	.	0	A	197657764	C	A	197657764	3	1	16	1	0	0	0	0	1	0	0	0	6915	680	24	3	2397	3	GTF3C3	2	197657764	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	18205503	197657764	45541609	18	2135											
FAM117B	150864	bcgsc.ca	37	chr2	203630387	203630387	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtggcctccctgtctaCaaacacagagcaagaccgag	11	7	10	13	1	1	2	0	0	1	2	2	3	2	2	3	1	4	2	3	1	3	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	FAM117B	NM_173511	exon8	c.C1670T	p.T557I	TGTCTACAAACAC	.	22	3	45	0	.	73	T	203630387	T	T	203630387	3	4	16	1	0	0	0	0	1	0	0	0	5441	478	17	3	1700	3	FAM117B	2	203630387	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	5972623	203630387	39568986	19	2136											
ATG16L1	55054	bcgsc.ca	37	chr2	234164841	234164841	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	accaaacaggcacgagataaGgtattttgaaactaacttgt	16	10	8	7	1	0	2	0	1	0	1	0	3	0	2	1	2	3	2	1	2	5	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ATG16L1	NM_198890	exon2	c.G209T	p.R70M	AGATAAGGTATTT	.	46	4	63	0	.	83	T	234164841	T	T	234164841	3	4	16	1	0	0	0	0	1	0	0	0	1090	1014	35	3	215	3	ATG16L1	2	234164841	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	30534454	234164841	9034532	20	2137											
COL6A3	1293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	238280843	238280843	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcgctgaactggatgaCagccacccgggtggtgtcaa	9	8	13	11	2	2	2	2	2	0	0	3	3	2	3	2	3	2	1	2	3	2	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004369	exon9	c.G3817A	p.V1273I	GGATGACAGCCAC	.	20	4	30	0	.	.	T	238280843	C	T	238280843	3	4	16	1	0	0	0	0	1	0	0	0	3724	478	17	3	5907	3	COL6A3	2	238280843	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	4116002	238280843	4918530	21	2138											
LRRFIP1	9208	hgsc.bcm.edu	37	chr2	238672115	238672115	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aatccccagtacccgtagaaAcccttaaagatgttaaaaaa	18	8	5	10	1	0	2	0	0	0	2	1	2	1	2	4	0	2	3	4	0	9	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LRRFIP1_ENST00000392000,NS,carcinoma,0,2	LRRFIP1_ENST00000392000	NM_001137552	exon11	c.A1759T	p.T587S	GTAGAAACCCTTA	.	44	2	72	0	.	0	T	238672115	A	T	238672115	3	4	16	1	0	0	0	0	1	0	0	0	9072	43	2	5	2477	5	LRRFIP1	2	238672115	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09	391272	238672115	4527258	22	2139											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52440307	52440307	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tactgtctgacggttcacctTcagcacatgcagcctggcct	7	11	9	14	1	3	1	2	1	1	0	3	1	3	1	3	2	4	3	3	2	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004656	exon9	c.A745T	p.K249X	TCACCTTCAGCAC	.	11	8	24	0	.	.	A	52440307	T	A	52440307	4	1	16	1	0	0	0	0	0	1	0	0	1309	1792	62	5	1480	5	BAP1	3	52440307	Nonsense_Mutation	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09		52440307	145582123	23	2140											
GFM1	85476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	158362500	158362511	+	In_Frame_Del	DEL	AGCAGGTACCGG	AGCAGGTACCGG	-																															ctccctaggctggcagaggaAgcaggtaccggagcatagag																								novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	AGCAGGTACCGG	AGCAGGTACCGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_024996	exon1	c.76_81del	p.26_27del	AGAGGAAGCAGGT	.	46	11	77	0	.	.	-	158362511	AGCAGGTACCGG	-	158362500	7	5	16	1	0	1	0	1	0	0	0	0	6383	72	3	0	79	0	GFM1	3	158362500	In_Frame_Del	DEL	AGCAGGTACCGG	TCGA-W5-AA2W-01A-11D-A417-09	105922193	158362500	39659930	24	2141											
MUC4	4585	ucsc.edu	37	chr3	195509287	195509287	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggctggtgacatgaagagggTtggcgtgacctgtggatgct	7	10	18	6	1	0	4	0	3	0	1	0	5	0	5	1	5	1	3	1	5	1	1	rs201610800	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	MUC4	NM_018406	exon2	c.A9164C	p.N3055T	AGAGGGTTGGCGT	.	81	16	85	8	.	1505	G	195509287	T	G	195509287	3	3	16	1	0	0	0	0	1	0	0	0	10026	1725	60	4		4	MUC4	3	195509287	Missense_Mutation	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09	37146787	195509287	2513143	25	2142											
ACSL6	23305	bcgsc.ca	37	chr5	131329781	131329781	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggctgcaaggcctttggccgGtgagtgaaccagtaggcaag	9	7	16	9	1	0	2	0	2	0	0	0	2	0	2	3	5	2	4	3	5	4	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ACSL6	NM_001009185	exon2	c.C213A	p.H71Q	TGGCCGGTGAGTG	.	15	3	31	0	.	169	T	131329781	T	T	131329781	3	4	16	1	0	0	0	0	1	0	0	0	181	1252	44	3	2117	3	ACSL6	5	131329781	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		131329781	49585479	26	2143											
ANKHD1	54882	hgsc.bcm.edu	37	chr5	139885404	139885404	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atatagaagcacagtctgaaCgaactaaggatactccgctt	15	9	8	9	2	1	2	0	1	1	1	2	4	2	3	1	1	4	2	1	1	7	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_017747	exon18	c.C3358T	p.R1120X	TCTGAACGAACTA	.	43	4	59	0	.	.	T	139885404	C	T	139885404	4	4	16	1	0	0	0	0	0	1	0	0	624	528	19	1	3534	1	ANKHD1	5	139885404	Nonsense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	8555623	139885404	41029856	27	2144											
JAKMIP2	9832	hgsc.bcm.edu	37	chr5	146970683	146970683	+	RNA	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caatcataaagacagaaaagCaaatccctgtagtaagaaac	21	6	6	8	0	1	3	1	0	0	3	2	3	2	3	1	0	2	3	1	0	9	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	GAAAAGCAAATCC	.	65	4	74	0	.	.	T	146970683	C	T	146970683	1	4	16	0	1	0	0	0	0	0	0	0	7985	725	25	3		3	JAKMIP2	5	146970683	RNA	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	7085279	146970683	33944577	28	2145											
TRIM40	135644	hgsc.bcm.edu	37	chr6	30113806	30113806	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cggagcaggaagctcagaaaGgacattgcagaacttcagcg	14	5	13	9	2	2	2	2	0	0	2	2	5	2	5	0	3	5	3	0	3	3	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_138700	exon2	c.G381T	p.K127N	CAGAAAGGACATT	.	40	3	50	0	.	.	T	30113806	G	T	30113806	3	4	16	1	0	0	0	0	1	0	0	0	16576	991	35	3	387	3	TRIM40	6	30113806	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		30113806	141001261	29	2146											
SPATS1	221409	ucsc.edu	37	chr6	44310855	44310855	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gagtccatccatgctcactgGaaacagtccacggggctgcc	9	7	11	14	1	1	0	1	0	0	0	4	2	4	1	4	3	3	2	4	3	1	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	SPATS1	NM_145026	exon2	c.G23T	p.G8V	TCACTGGAAACAG	.	35	4	35	0	.	61	T	44310855	G	T	44310855	3	4	16	1	0	0	0	0	1	0	0	0	15074	1174	41	3	25	3	SPATS1	6	44310855	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	14197049	44310855	126804212	30	2147											
GJA1	2697	hgsc.bcm.edu;bcgsc.ca	37	chr6	121768335	121768335	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagaggaagaactcaaGgttgcccaaactgatggtgt	16	7	12	6	0	1	4	1	1	0	3	1	5	1	5	1	3	3	1	1	3	6	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GJA1,NS,carcinoma,0,1	GJA1	NM_000165	exon2	c.G342T	p.K114N	ACTCAAGGTTGCC	.	18	3	60	0	.	0	T	121768335	G	T	121768335	3	4	16	1	0	0	0	0	1	0	0	0	6442	991	35	3	344	3	GJA1	6	121768335	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	77457480	121768335	49346732	31	2148											
CTGF	1490	bcgsc.ca	37	chr6	132270556	132270556	+	Missense_Mutation	SNP	T	G	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgaactccaccggcagggTggtggttctgtggggggtgc	4	10	18	9	1	1	1	0	1	1	0	2	1	2	1	2	7	2	2	2	7	1	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CTGF	NM_001901	exon5	c.A898C	p.T300P	GCAGGGTGGTGGT	.	35	9	77	3	.	36	G	132270556	G	G	132270556	3	3	16	1	0	0	0	0	1	0	0	0	4032	1696	59	4	155	4	CTGF	6	132270556	Missense_Mutation	SNP	T	TCGA-W5-AA2W-01A-11D-A417-09	10502221	132270556	38844511	32	2149											
TNS3	64759	hgsc.bcm.edu	37	chr7	47384537	47384537	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cttaccatacggtgtctctgGagacacaggaaatgctggag	11	9	12	9	1	1	1	0	0	1	1	2	4	1	3	1	4	3	1	1	4	3	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TNS3,NS,carcinoma,0,1	TNS3	NM_022748	exon19	c.C2551A	p.P851T	TCTCTGGAGACAC	.	33	2	48	0	.	0	T	47384537	G	T	47384537	3	4	16	1	0	0	0	0	1	0	0	0	16404	1174	41	3	1838	3	TNS3	7	47384537	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		47384537	111754126	33	2150											
ANKIB1	54467	hgsc.bcm.edu	37	chr7	92027127	92027127	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgcacagctcttccctgcGtgactacacccctgccagtc	6	9	8	18	1	1	1	0	1	1	0	3	1	2	1	4	0	5	3	4	0	1	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ANKIB1,NS,carcinoma,0,1	ANKIB1	NM_019004	exon19	c.G2486T	p.R829L	CCCTGCGTGACTA	.	27	2	37	0	.	0	T	92027127	G	T	92027127	3	4	16	1	0	0	0	0	1	0	0	0	626	1145	40	2	2556	2	ANKIB1	7	92027127	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	44642590	92027127	67111536	34	2151											
THAP5	168451	hgsc.bcm.edu	37	chr7	108210000	108210001	+	Frame_Shift_Ins	INS	-	-	A																															cttacaacaaatcgctgcgcINSaatagcggggcatgactcgg																								novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001130475	exon1	c.14_15insT	p.C5fs	GCTGCGCAATAGC	.	52	18	70	0	.	.	A	108210001	-	A	108210000	7	5	16	1	0	1	1	0	0	0	0	0	15907	710	25	0	1185	0	THAP5	7	108210000	Frame_Shift_Ins	INS	-	TCGA-W5-AA2W-01A-11D-A417-09	16182873	108210000	50928663	35	2152											
PAXIP1	22976	hgsc.bcm.edu	37	chr7	154767932	154767932	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttcataaataatcagacgaGgatgataaaatgcttcgtcc	15	11	7	8	2	2	2	2	1	0	1	4	4	3	3	1	1	1	1	1	1	5	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PAXIP1,NS,carcinoma,0,1	PAXIP1	NM_007349	exon6	c.C548A	p.P183H	AGACGAGGATGAT	.	36	2	67	0	.	0	T	154767932	G	T	154767932	3	4	16	1	0	0	0	0	1	0	0	0	11534	1000	35	3	2725	3	PAXIP1	7	154767932	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	46557932	154767932	4370731	36	2153											
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	chr8	61728947	61728951	+	Frame_Shift_Del	DEL	TCTTA	TCTTA	-																															tattgttttgttctttcagcTcttatcttcattgtcagtgg																								novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	TCTTA	TCTTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_017780	exon8	c.2499_2503del	p.833_835del	TTCAGCTCTTATC	.	90	34	132	0	.	.	-	61728951	TCTTA	-	61728947	7	5	16	1	0	1	0	1	0	0	0	0	3352	1565	54	0	2526	0	CHD7	8	61728947	Frame_Shift_Del	DEL	TCTTA	TCGA-W5-AA2W-01A-11D-A417-09		61728947	84635075	37	2154											
OSGIN2	734	hgsc.bcm.edu	37	chr8	90937735	90937735	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagcatttgtttgttgaaaGaggaggaggagatgggatag	14	10	16	1	0	0	3	0	1	0	2	0	7	0	6	0	4	1	3	0	4	3	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.,2	.	NM_001126111	exon6	c.G1625T	p.R542I	TTGAAAGAGGAGG	.	48	2	77	0	.	73	T	90937735	G	T	90937735	3	4	16	1	0	0	0	0	1	0	0	0	11337	942	33	3	1647	3	OSGIN2	8	90937735	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	29208788	90937735	55426287	38	2155											
COL22A1	169044	hgsc.bcm.edu	37	chr8	139729078	139729078	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acaaacagaccttctctccaGgtcggcctgccaggccctgc	8	7	9	17	1	1	1	0	0	1	1	4	1	2	1	5	3	3	0	5	3	1	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	COL22A1,NS,carcinoma,0,1	COL22A1	NM_152888	exon28	c.C2390A	p.P797H	TCTCCAGGTCGGC	.	27	2	34	0	.	0	T	139729078	G	T	139729078	3	4	16	1	0	0	0	0	1	0	0	0	3704	1000	35	3	2642	3	COL22A1	8	139729078	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	48791343	139729078	6634944	39	2156											
ZNF16	7564	hgsc.bcm.edu	37	chr8	146156248	146156248	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgctggatgaggaccGaacgctgactgaaggctttc	8	10	14	9	2	1	3	0	3	1	0	2	6	1	5	1	4	2	3	1	4	2	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF16,colon,carcinoma,0,1	ZNF16	NM_006958	exon3	c.C1925A	p.S642X	AGGACCGAACGCT	.	41	3	57	0	.	0	T	146156248	G	T	146156248	4	4	16	1	0	0	0	0	0	1	0	0	17796	1059	37	2	127	2	ZNF16	8	146156248	Nonsense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	6427170	146156248	207774	40	2157											
KIF24	347240	hgsc.bcm.edu;bcgsc.ca	37	chr9	34259675	34259675	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tggcgatcatgcaggttttgGcattgccgatgaaagagtcc	9	11	13	8	2	1	2	1	1	0	1	2	4	2	2	2	3	2	3	2	3	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_194313	exon10	c.C1544T	p.A515V	GTTTTGGCATTGC	.	46	4	41	0	.	.	A	34259675	G	A	34259675	3	1	16	1	0	0	0	0	1	0	0	0	8334	1203	42	3	2578	3	KIF24	9	34259675	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		34259675	106953756	41	2158											
FBXO10	26267	hgsc.bcm.edu;bcgsc.ca	37	chr9	37537628	37537628	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgggctccaggcctggtcccGgctctctaggtccagggaca	5	8	14	14	1	1	0	0	0	1	0	5	1	4	1	4	6	0	2	4	6	1	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_012166	exon3	c.C898A	p.R300R	GGTCCCGGCTCTC	.	65	4	55	0	.	.	T	37537628	G	T	37537628	2	4	16	1	0	0	0	0	0	0	0	1	5759	1115	39	2		2	FBXO10	9	37537628	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	3277953	37537628	103675803	42	2159											
PIP5KL1	138429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130688240	130688240	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tccacccagcggctcacctcGcagcctttgatgtcatacct	7	10	7	17	2	2	1	2	1	0	0	4	1	3	1	5	1	3	2	5	1	1	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001135219	exon8	c.C669T	p.C223C	CACCTCGCAGCCT	.	55	20	105	0	.	.	A	130688240	G	A	130688240	2	1	16	1	0	0	0	0	0	0	0	1	11990	1079	38	1		1	PIP5KL1	9	130688240	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	93150612	130688240	10525191	43	2160											
ADAMTSL2	9719	bcgsc.ca	37	chr9	136405777	136405777	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcactgtaccaccgtggacgGccagcggcagctcatggtcc	7	6	13	15	3	1	0	1	0	0	0	2	1	2	1	4	4	3	4	4	4	1	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ADAMTSL2	NM_014694	exon6	c.G470A	p.G157D	TGGACGGCCAGCG	.	48	4	51	0	.	40	A	136405777	A	A	136405777	3	1	16	1	0	0	0	0	1	0	0	0	274	1203	42	3	488	3	ADAMTSL2	9	136405777	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	5717537	136405777	4807654	44	2161											
MYO3A	53904	hgsc.bcm.edu	37	chr10	26310439	26310439	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggttttctactaggtgattgCatgtgaacagcaattggata	11	14	11	5	0	1	2	0	2	1	0	1	3	1	3	0	3	4	3	0	3	5	7	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MYO3A,NS,carcinoma,0,1	MYO3A	NM_017433	exon8	c.C593T	p.A198V	TGATTGCATGTGA	.	37	3	48	0	.	0	T	26310439	C	T	26310439	3	4	16	1	0	0	0	0	1	0	0	0	10124	710	25	3	615	3	MYO3A	10	26310439	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		26310439	109224308	45	2162											
PSTK	118672	hgsc.bcm.edu	37	chr10	124742803	124742803	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagattcgttgggcttttGccagctctttttagattgtc	5	19	9	8	1	2	2	1	0	1	2	4	2	2	2	1	1	2	3	1	1	1	9	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PSTK,rectum,carcinoma,0,1	PSTK	NM_153336	exon3	c.G524A	p.C175Y	GCTTTTGCCAGCT	.	39	2	52	0	.	0	A	124742803	G	A	124742803	3	1	16	1	0	0	0	0	1	0	0	0	12769	1319	46	3	534	3	PSTK	10	124742803	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	98432364	124742803	10791944	46	2163											
OR4B1	119765	hgsc.bcm.edu	37	chr11	48238420	48238420	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggccttttccaggatccagCtgtgcagagtgtatgctttg	6	14	12	9	0	0	1	0	0	0	1	2	2	2	2	3	2	3	4	3	2	1	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	OR4B1,right_upper_lobe,carcinoma,0,1	OR4B1	NM_001005470	exon1	c.C59T	p.A20V	ATCCAGCTGTGCA	.	28	2	52	0	.	0	T	48238420	C	T	48238420	3	4	16	1	0	0	0	0	1	0	0	0	11092	797	28	3	61	3	OR4B1	11	48238420	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		48238420	86768096	47	2164											
FTH1	2495	hgsc.bcm.edu	37	chr11	61734852	61734852	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gttgatggcggcctctgagtCctggtggtagttctggcgca	4	12	16	9	2	2	2	0	2	2	0	3	2	3	2	2	5	0	4	2	5	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	FTH1,NS,malignant_melanoma,0,1	FTH1	NM_002032	exon1	c.G46T	p.D16Y	CTGAGTCCTGGTG	.	26	3	49	0	.	0	A	61734852	C	A	61734852	3	1	16	1	0	0	0	0	1	0	0	0	6117	855	30	3	521	3	FTH1	11	61734852	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	13496432	61734852	73271664	48	2165											
BAD	572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64051695	64051695	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggctgctcctgctggtgaCtggcgtcccacaggaggcct	4	10	14	13	1	0	1	0	1	0	0	2	2	2	2	3	5	2	3	3	5	0	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_032989	exon2	c.G146A	p.S49N	TGGTGACTGGCGT	.	23	6	27	0	.	.	T	64051695	C	T	64051695	3	4	16	1	0	0	0	0	1	0	0	0	1283	565	20	3	372	3	BAD	11	64051695	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	2316843	64051695	70954821	49	2166											
NOX4	50507	hgsc.bcm.edu;broad.mit.edu	37	chr11	89106611	89106611	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tctacatacctgtccagtctCctactattttaagatgaacc	11	14	4	12	0	2	2	0	1	2	1	4	2	3	2	4	0	4	0	4	0	6	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	NOX4,colon,carcinoma,0,2	NOX4	NM_001143836	exon12	c.G1124A	p.G375E	CAGTCTCCTACTA	.	53	4	90	0	.	0	T	89106611	C	T	89106611	3	4	16	1	0	0	0	0	1	0	0	0	10605	855	30	3	640	3	NOX4	11	89106611	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	25054916	89106611	45899905	50	2167											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825221	95825221	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgctgctgctgctgCtgttgttgctgttgttgttg	0	20	14	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	13	0	0	0	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MAML2,NS,carcinoma,0,1	MAML2	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	27	2	48	2	.	0	T	95825221	C	T	95825221	2	4	16	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825221	Silent	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	6718610	95825221	39181295	51	2168											
MPZL3	196264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118106178	118106178	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgacttcttatagccagacCtgctcctcttcttcagccca	8	13	5	15	0	4	2	1	1	3	1	5	2	5	2	4	0	3	1	4	0	2	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_198275	exon4	c.G578A	p.R193K	CCAGACCTGCTCC	.	28	10	50	0	.	.	T	118106178	C	T	118106178	3	4	16	1	0	0	0	0	1	0	0	0	9800	681	24	3	141	3	MPZL3	11	118106178	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	22280957	118106178	16900338	52	2169											
RAB3IP	117177	hgsc.bcm.edu	37	chr12	70178544	70178544	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagaggctttcaaaagtGcgagatcaacttggacagga	13	9	13	6	1	2	2	2	1	0	2	2	6	2	4	0	3	2	1	0	3	3	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_175623	exon4	c.G603T	p.V201V	AAAAGTGCGAGAT	.	78	3	120	0	.	.	T	70178544	G	T	70178544	2	4	16	1	0	0	0	0	0	0	0	1	12990	1306	46	3		3	RAB3IP	12	70178544	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		70178544	63673351	53	2170											
NAV3	89795	broad.mit.edu;bcgsc.ca	37	chr12	78362376	78362378	+	In_Frame_Del	DEL	CAA	CAA	-																															acaagcagcaacaacaccatCaacaacagtactatcagtcc																								novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	NAV3,NS,carcinoma,-2,1	NAV3	NM_014903	exon5	c.565_567del	p.189_189del	CACCATCAACAAC	.	37	8	41	0	.	506	-	78362378	CAA	-	78362376	7	5	16	1	0	1	0	1	0	0	0	0	10233	827	29	0	583	0	NAV3	12	78362376	In_Frame_Del	DEL	CAA	TCGA-W5-AA2W-01A-11D-A417-09	8183832	78362376	55489519	54	2171											
TMPO	7112	hgsc.bcm.edu	37	chr12	98927571	98927571	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcaagttgacaggcaGctgccttcactggcatgcaa	10	8	12	11	0	1	1	1	1	0	0	1	1	1	1	1	3	4	7	1	3	2	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TMPO_ENST00000266732,NS,carcinoma,0,1	TMPO_ENST00000266732	NM_003276	exon4	c.G1536A	p.Q512Q	CAGGCAGCTGCCT	.	45	3	38	0	.	0	A	98927571	G	A	98927571	2	1	16	1	0	0	0	0	0	0	0	1	16297	962	34	3		3	TMPO	12	98927571	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	20565195	98927571	34924324	55	2172											
SVOP	55530	hgsc.bcm.edu	37	chr12	109334559	109334559	+	Splice_Site	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aatctcttaaaggatacctaCgaaacacagcacggcaaaga	18	6	7	10	2	1	1	0	0	1	1	2	3	1	2	1	2	4	2	1	2	7	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SVOP_ENST00000299134,NS,carcinoma,0,2	SVOP_ENST00000299134	NM_018711	exon8	c.609+1G>A	.	TACCTACGAAACA	.	27	2	31	0	.	0	T	109334559	C	T	109334559	5	4	16	1	0	0	0	0	0	0	1	0	15479	550	19	1		1	SVOP	12	109334559	Splice_Site	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	10406988	109334559	24517336	56	2173											
GCN1L1	10985	hgsc.bcm.edu	37	chr12	120622662	120622662	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagcagaacaatttgcaGagccccttcactgctccctc	10	9	7	15	0	2	2	2	0	0	2	4	2	3	2	3	0	5	3	3	0	3	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GCN1L1,NS,carcinoma,0,1	GCN1L1	NM_006836	exon3	c.C150A	p.L50L	TTTGCAGAGCCCC	.	17	2	33	0	.	0	T	120622662	G	T	120622662	2	4	16	1	0	0	0	0	0	0	0	1	6339	929	33	3		3	GCN1L1	12	120622662	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	11288103	120622662	13229233	57	2174											
ZNF268	10795	hgsc.bcm.edu	37	chr12	133764550	133764550	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagggactcctggtctGcaacctctccctggaacacc	8	7	10	16	0	2	0	0	0	2	0	4	2	3	2	5	4	3	1	5	4	3	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF268,rectum,carcinoma,0,1	ZNF268	NM_152943	exon3	c.G126T	p.L42L	TGGTCTGCAACCT	.	45	2	72	0	.	0	T	133764550	G	T	133764550	2	4	16	1	0	0	0	0	0	0	0	1	17865	1306	46	3		3	ZNF268	12	133764550	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	13141888	133764550	87345	58	2175											
ARHGAP5	394	bcgsc.ca	37	chr14	32563150	32563150	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggatccttcagataactatgCggaacccattgatacaattt	13	12	7	9	1	1	2	1	1	0	1	2	4	2	4	2	2	4	0	2	2	5	6	rs373639217		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ARHGAP5	NM_001173	exon2	c.C3275T	p.A1092V	ACTATGCGGAACC	.	66	4	92	0	.	166	T	32563150	T	T	32563150	3	4	16	1	0	0	0	0	1	0	0	0	883	768	27	1	3277	1	ARHGAP5	14	32563150	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		32563150	74786390	59	2176											
SIX1	6495	hgsc.bcm.edu	37	chr14	61115903	61115903	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agccaaacgacggcagcatcGacatggctggggcctgccgg	9	4	15	13	4	0	0	0	0	0	0	1	2	0	0	3	5	4	3	3	5	1	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SIX1,NS,carcinoma,0,1	SIX1	NM_005982	exon1	c.C5T	p.S2L	AGCATCGACATGG	.	16	2	17	0	.	0	A	61115903	G	A	61115903	3	1	16	1	0	0	0	0	1	0	0	0	14401	1059	37	1	857	1	SIX1	14	61115903	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	28552753	61115903	46233637	60	2177											
KCNK10	54207	hgsc.bcm.edu	37	chr14	88693857	88693857	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagattttgcctccttcagtGctcggagcaatattcccata	10	13	7	11	1	1	1	1	0	0	1	4	2	3	2	3	1	3	2	3	1	4	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KCNK10_ENST00000312350,brain,glioma,0,2	KCNK10_ENST00000312350	NM_138318	exon4	c.C543A	p.S181R	TTCAGTGCTCGGA	.	46	2	70	1	.	0	T	88693857	G	T	88693857	3	4	16	1	0	0	0	0	1	0	0	0	8103	1310	46	3	1104	3	KCNK10	14	88693857	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	27577954	88693857	18655683	61	2178											
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	92105595	92105595	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgtatcttcccattcCtattaggaaatacagagaag	13	12	7	9	0	1	1	0	0	1	1	3	3	3	2	2	1	2	2	2	1	6	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_024764	exon17	c.1433-1G>A	.	CCATTCCTATTAG	.	46	19	70	0	.	.	T	92105595	C	T	92105595	5	4	16	1	0	0	0	0	0	0	1	0	2709	695	24	3	1966	3	CATSPERB	14	92105595	Splice_Site	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	3411738	92105595	15243945	62	2179											
HSP90AA1	3320	bcgsc.ca	37	chr14	102548746	102548746	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgcttgtgacaatacaGcatggagatgtcaccaatcg	12	11	10	8	1	1	2	1	1	0	1	2	3	1	2	1	1	3	2	1	1	4	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HSP90AA1	NM_001017963	exon11	c.C2157T	p.C719C	AATACAGCATGGA	.	44	4	73	0	.	65	A	102548746	A	A	102548746	2	1	16	1	0	0	0	0	0	0	0	1	7444	963	34	3		3	HSP90AA1	14	102548746	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	10443151	102548746	4800794	63	2180											
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102800960	102800960	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctggctcaggttgtgaccGtgtatgagtttcttctgatg	6	15	13	7	1	3	3	1	3	2	0	3	3	3	3	1	2	1	5	1	2	1	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_018335	exon4	c.G1486A	p.V496M	GTGACCGTGTATG	.	44	24	100	0	.	.	A	102800960	G	A	102800960	3	1	16	1	0	0	0	0	1	0	0	0	18235	1145	40	1	1500	1	ZNF839	14	102800960	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	252214	102800960	4548580	64	2181											
TMEM87A	25963	broad.mit.edu	37	chr15	42519937	42519937	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtcactattctgaacttcAtggttgtccagatgataaac	12	14	7	8	0	3	3	2	2	1	1	4	3	4	3	1	1	2	1	1	1	4	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	TMEM87A	NM_015497	exon14	c.T1271C	p.M424T	AACTTCATGGTTG	.	38	3	39	0	.	56	G	42519937	A	G	42519937	3	3	16	1	0	0	0	0	1	0	0	0	16270	217	8	4	424	4	TMEM87A	15	42519937	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09		42519937	60011455	65	2182											
MAP1A	4130	hgsc.bcm.edu	37	chr15	43818597	43818597	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	caggaagaaaagtactggagGgggcaggatgtggtccagga	13	5	18	5	0	0	1	0	0	0	1	1	5	1	5	1	7	1	2	1	7	4	1	rs372656438		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_002373	exon4	c.G4926T	p.R1642S	CTGGAGGGGGCAG	.	78	3	62	0	.	.	T	43818597	G	T	43818597	3	4	16	1	0	0	0	0	1	0	0	0	9277	1223	43	3	4928	3	MAP1A	15	43818597	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	1298660	43818597	58712795	66	2183											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72226035	72226035	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ggaagggcaggcttggatttGaaatttttgtttctcctata	9	16	11	5	0	1	1	0	1	1	0	2	3	1	3	1	4	0	3	1	4	4	7	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_006901	exon18	c.C2538G	p.F846L	GGATTTGAAATTT	.	180	101	183	0	.	.	C	72226035	G	C	72226035	3	2	16	1	0	0	0	0	1	0	0	0	10132	1281	45	5	5208	5	MYO9A	15	72226035	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	28407438	72226035	30305357	67	2184											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	86125248	86125248	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	caatgggcagtactcctgagGaagccacggggagccttgca	10	6	14	11	1	0	1	0	1	0	0	1	3	1	3	3	4	4	3	3	4	3	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_007200	exon7	c.G3949A	p.E1317K	CCTGAGGAAGCCA	.	40	14	44	0	.	.	A	86125248	G	A	86125248	3	1	16	1	0	0	0	0	1	0	0	0	446	1175	41	3	3971	3	AKAP13	15	86125248	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	13899213	86125248	16406144	68	2185											
BLM	641	broad.mit.edu;bcgsc.ca	37	chr15	91310162	91310162	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tccagctacatatctgacagGtgataagactgactcagaag	14	9	9	9	0	2	5	1	3	1	2	3	5	3	5	1	1	2	1	1	1	4	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	BLM	NM_000057	exon10	c.G2216T	p.G739V	TGACAGGTGATAA	.	178	7	178	1	.	122	T	91310162	G	T	91310162	3	4	16	1	0	0	0	0	1	0	0	0	1444	1261	44	3	2250	3	BLM	15	91310162	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	5184914	91310162	11221230	69	2186											
VPS33B	26276	hgsc.bcm.edu	37	chr15	91557064	91557064	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagatcactttgtatttGcgagttcggccagccaattt	9	14	9	9	2	1	2	1	1	0	1	2	3	1	2	2	1	2	2	2	1	3	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	VPS33B,NS,carcinoma,0,1	VPS33B	NM_018668	exon5	c.C327T	p.R109R	GTATTTGCGAGTT	.	66	4	57	0	.	0	A	91557064	G	A	91557064	2	1	16	1	0	0	0	0	0	0	0	1	17262	1306	46	3		3	VPS33B	15	91557064	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	246902	91557064	10974328	70	2187											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu	37	chr17	7644290	7644290	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gggtgcacatcctccggcgtCgcatcgacagagtcatgacc	8	7	12	14	4	1	2	1	1	0	1	5	3	3	2	3	2	1	2	3	2	0	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_020877	exon10	c.C1669T	p.R557C	CGGCGTCGCATCG	.	10	7	9	0	.	.	T	7644290	C	T	7644290	3	4	16	1	0	0	0	0	1	0	0	0	4630	884	31	1	1707	1	DNAH2	17	7644290	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		7644290	73550920	71	2188											
MYH8	4626	hgsc.bcm.edu	37	chr17	10303865	10303865	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtgcttcttccgaagagcagCcaccatagcttcatgctgca	9	10	9	13	1	2	1	1	0	1	1	3	2	3	1	3	0	6	5	3	0	2	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MYH8,NS,carcinoma,0,1	MYH8	NM_002472	exon27	c.G3577A	p.A1193T	GAGCAGCCACCAT	.	37	2	38	1	.	0	T	10303865	C	T	10303865	3	4	16	1	0	0	0	0	1	0	0	0	10089	739	26	3	2292	3	MYH8	17	10303865	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	2659575	10303865	70891345	72	2189											
PIP4K2B	8396	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	36934618	36934618	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgctcgcttctctggcaaccGtagaaccctgaaaggataag	11	8	10	12	3	1	2	0	1	1	1	3	3	1	3	2	2	2	4	2	2	5	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_003559	exon6	c.C662T	p.T221M	GCAACCGTAGAAC	.	25	4	37	0	.	.	A	36934618	G	A	36934618	3	1	16	1	0	0	0	0	1	0	0	0	11985	1145	40	1	608	1	PIP4K2B	17	36934618	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	26630753	36934618	44260592	73	2190											
CDC27	996	ucsc.edu;bcgsc.ca	37	chr17	45232055	45232055	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	taccttttttgaaggggctcCggtggatggcacatcaatta	9	13	11	8	1	1	1	1	1	0	0	2	2	2	2	2	5	1	2	2	5	4	5	rs200268612	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CDC27	NM_001114091	exon8	c.G940A	p.G314R	GGGCTCCGGTGGA	.	45	22	54	2	.	337	T	45232055	C	T	45232055	3	4	16	1	0	0	0	0	1	0	0	0	3088	661	23	1	1600	1	CDC27	17	45232055	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	8297437	45232055	35963155	74	2191											
RSAD1	55316	broad.mit.edu	37	chr17	48560713	48560713	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcaggggcccatggacGatttatgccccagggggctg	6	9	16	10	1	1	0	1	0	0	0	1	2	1	1	3	5	1	2	3	5	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	RSAD1,colon,carcinoma,+1,1	RSAD1	NM_018346	exon6	c.G917T	p.R306L	ATGGACGATTTAT	.	32	3	47	0	.	36	T	48560713	G	T	48560713	3	4	16	1	0	0	0	0	1	0	0	0	13746	1058	37	2	939	2	RSAD1	17	48560713	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	3328658	48560713	32634497	75	2192											
GPS1	2873	bcgsc.ca	37	chr17	80013654	80013654	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaagtacaagcaggctGccaagtgcctcctgctggct	9	7	12	13	0	0	0	0	0	0	0	1	1	1	1	4	3	5	5	4	3	4	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	GPS1	NM_212492	exon7	c.G907A	p.A303T	CAGGCTGCCAAGT	.	15	3	27	0	.	30	A	80013654	A	A	80013654	3	1	16	1	0	0	0	0	1	0	0	0	6773	1319	46	3	982	3	GPS1	17	80013654	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	31452941	80013654	1181556	76	2193											
HMHA1	23526	broad.mit.edu	37	chr19	1068619	1068619	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agcccactgacagccgccagCccgggcgagctgcccaccga	8	2	12	19	4	0	1	0	1	0	0	0	3	0	1	6	1	5	1	6	1	0	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HMHA1	NM_001258328	exon2	c.C345T	p.S115S	CGCCAGCCCGGGC	.	8	3	10	0	.	78	T	1068619	C	T	1068619	2	4	16	1	0	0	0	0	0	0	0	1	7281	738	26	3		3	HMHA1	19	1068619	Silent	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		1068619	58060364	77	2194											
ZNF557	79230	hgsc.bcm.edu	37	chr19	7083328	7083328	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagagagttcatacgggggAgggtcattatgtatgtaatc	12	11	13	5	1	2	1	2	0	0	1	3	3	2	2	0	3	1	3	0	3	5	5	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF557,right_lower_lobe,carcinoma,0,1	ZNF557	NM_001044387	exon8	c.A866G	p.E289G	CGGGGGAGGGTCA	.	50	2	52	0	.	0	G	7083328	A	G	7083328	3	3	16	1	0	0	0	0	1	0	0	0	18045	304	11	4	888	4	ZNF557	19	7083328	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09	6014709	7083328	52045655	78	2195											
HSH2D	84941	bcgsc.ca	37	chr19	16268483	16268483	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	acaggagttggcaccaaatgGtagtgagagccctatcctcc	11	8	11	11	0	0	1	0	1	0	1	2	3	2	2	4	3	1	3	4	3	3	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HSH2D	NM_032855	exon9	c.G937T	p.V313L	CAAATGGTAGTGA	.	45	4	58	0	.	16	T	16268483	T	T	16268483	3	4	16	1	0	0	0	0	1	0	0	0	7443	1261	44	3	956	3	HSH2D	19	16268483	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	9185155	16268483	42860500	79	2196											
ZNF100	163227	hgsc.bcm.edu;bcgsc.ca	37	chr19	21910398	21910398	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agaaccagttgaaggctttgCcacaatctttacattggtag	12	12	9	8	0	1	2	0	1	1	1	1	2	1	2	2	2	3	3	2	2	5	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_173531	exon5	c.G716A	p.G239D	GCTTTGCCACAAT	.	84	4	97	0	.	.	T	21910398	C	T	21910398	3	4	16	1	0	0	0	0	1	0	0	0	17771	739	26	3	916	3	ZNF100	19	21910398	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	5641915	21910398	37218585	80	2197											
CYP2F1	1572	hgsc.bcm.edu	37	chr19	41628798	41628798	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acacataacctgctctttggCggcaccaagacggtgagcac	11	7	10	13	2	1	2	0	1	1	1	1	2	1	2	2	3	3	3	2	3	2	2	rs374776224		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_000774	exon7	c.C894T	p.G298G	CTTTGGCGGCACC	.	46	4	45	0	.	.	T	41628798	C	T	41628798	2	4	16	1	0	0	0	0	0	0	0	1	4194	755	27	1		1	CYP2F1	19	41628798	Silent	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09	19718400	41628798	17500185	81	2198											
AP2S1	1175	broad.mit.edu	37	chr19	47349293	47349293	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgtctcggacggtgaccacgGcatgcacctcctcgatcagc	7	7	11	16	5	2	1	1	1	1	0	5	3	3	2	3	3	2	2	3	3	0	0	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	AP2S1	NM_004069	exon2	c.C110A	p.A37D	ACCACGGCATGCA	.	17	3	21	0	.	12	T	47349293	G	T	47349293	3	4	16	1	0	0	0	0	1	0	0	0	739	1203	42	3	334	3	AP2S1	19	47349293	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	5720495	47349293	11779690	82	2199											
KCNJ14	3770	ucsc.edu	37	chr19	48967988	48967988	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacagaagatggggctgctaGcccccgagttctcacaccaa	12	6	10	13	1	1	2	1	0	1	2	2	3	1	2	3	2	3	3	3	2	4	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	KCNJ14	NM_013348	exon3	c.C1265A	p.P422Q	CTGCTAGCCCCCG	.	41	4	33	0	.	28	A	48967988	G	A	48967988	3	1	16	1	0	0	0	0	1	0	0	0	8092	971	34	3	1271	3	KCNJ14	19	48967988	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	1618695	48967988	10160995	83	2200											
KLK6	5653	hgsc.bcm.edu	37	chr19	51470530	51470530	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcttggtaggggtgagatGtcttgtcgcagggtccgcca	6	10	16	9	2	1	1	0	1	1	1	3	2	2	1	2	4	1	3	2	4	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KLK6,colon,carcinoma,0,1	KLK6	NM_001012964	exon3	c.C92A	p.T31K	TGAGATGTCTTGT	.	43	2	47	0	.	0	T	51470530	G	T	51470530	3	4	16	1	0	0	0	0	1	0	0	0	8451	1377	48	3	658	3	KLK6	19	51470530	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	2502542	51470530	7658453	84	2201											
KLK10	5655	hgsc.bcm.edu	37	chr19	51518101	51518101	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atccaggacatgtatttgcaGatctgggtgtagacagctgg	10	11	13	7	0	1	2	0	0	1	2	2	3	2	3	1	3	2	4	1	3	2	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KLK10,NS,carcinoma,0,1	KLK10	NM_145888	exon6	c.C786A	p.I262I	TTTGCAGATCTGG	.	46	2	50	0	.	0	T	51518101	G	T	51518101	2	4	16	1	0	0	0	0	0	0	0	1	8441	932	33	3		3	KLK10	19	51518101	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	47571	51518101	7610882	85	2202											
LIM2	3982	hgsc.bcm.edu	37	chr19	51883801	51883801	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgccacccagcccaggatgtAggaccaggaaaagcgccagt	12	4	12	13	1	0	0	0	0	0	0	0	3	0	3	5	3	3	1	5	3	3	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_030657	exon4	c.T544C	p.Y182H	GGATGTAGGACCA	.	55	4	41	0	.	.	G	51883801	A	G	51883801	3	3	16	1	0	0	0	0	1	0	0	0	8835	420	15	4	111	4	LIM2	19	51883801	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09	365700	51883801	7245182	86	2203											
ZNF583	147949	hgsc.bcm.edu	37	chr19	56935118	56935118	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaagcctttagccatcGtggatacctaattgtacatc	11	12	9	9	1	0	0	0	0	0	0	2	2	0	2	3	2	4	1	3	2	5	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF583,right_upper_lobe,carcinoma,0,1	ZNF583	NM_001159861	exon5	c.G1091A	p.R364H	GCCATCGTGGATA	.	45	2	42	0	.	0	A	56935118	G	A	56935118	3	1	16	1	0	0	0	0	1	0	0	0	18072	1145	40	1	1105	1	ZNF583	19	56935118	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	5051317	56935118	2193865	87	2204											
B4GALT5	9334	hgsc.bcm.edu	37	chr20	48256337	48256337	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aagaactcggtataaggaagCctaggaggagatgtgggaca	15	6	15	5	1	0	2	0	0	0	2	1	6	0	5	1	5	2	1	1	5	6	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004776	exon7	c.G795A	p.L265L	AGGAAGCCTAGGA	.	73	4	108	0	.	.	T	48256337	C	T	48256337	2	4	16	1	0	0	0	0	0	0	0	1	1272	753	26	3		3	B4GALT5	20	48256337	Silent	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		48256337	14769183	88	2205											
KRTAP12-2	353323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46086661	46086661	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acacggctggcttgaagctcAcgggcacacacacggaggac	11	4	13	13	3	1	1	1	1	0	0	1	3	1	3	0	5	1	4	0	5	1	1	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_181684	exon1	c.T143C	p.V48A	AAGCTCACGGGCA	.	18	11	53	0	.	.	G	46086661	A	G	46086661	3	3	16	1	0	0	0	0	1	0	0	0	8562	159	6	4	301	4	KRTAP12-2	21	46086661	Missense_Mutation	SNP	A	TCGA-W5-AA2W-01A-11D-A417-09		46086661	2043234	89	2206											
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38121037	38121037	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tattcaacagaacatccccaGatcatcttctacccaacaag	15	9	3	14	0	4	2	2	0	2	2	5	2	5	2	3	0	4	0	3	0	6	4	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TRIOBP_ENST00000344404,colon,carcinoma,0,1	TRIOBP_ENST00000344404	NM_001039141	exon7	c.G2474T	p.R825I	TCCCCAGATCATC	.	44	2	86	0	.	0	T	38121037	G	T	38121037	3	4	16	1	0	0	0	0	1	0	0	0	16614	942	33	3	2492	3	TRIOBP	22	38121037	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09		38121037	13183529	90	2207											
POLR3H	171568	ucsc.edu;bcgsc.ca	37	chr22	41928664	41928664	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcagggccactgttaccGtgcactccttctgggctgca	5	10	12	14	2	2	0	1	0	1	0	3	0	3	0	3	2	3	4	3	2	1	2	rs369041845		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	POLR3H	NM_001018050	exon3	c.C294T	p.H98H	GTTACCGTGCACT	.	27	4	28	0	.	30	A	41928664	G	A	41928664	2	1	16	1	0	0	0	0	0	0	0	1	12284	1159	40	1		1	POLR3H	22	41928664	Silent	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	3807627	41928664	9375902	91	2208											
XRCC6	2547	hgsc.bcm.edu;bcgsc.ca	37	chr22	42046801	42046801	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggtttgatgatccaggtttGatgctcatgggtttcaagcc	7	14	12	8	1	2	3	2	3	0	0	3	3	3	3	2	3	2	4	2	3	1	3	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001469	exon8	c.G1035T	p.L345F	AGGTTTGATGCTC	.	63	4	85	0	.	.	T	42046801	G	T	42046801	3	4	16	1	0	0	0	0	1	0	0	0	17517	1281	45	3	1061	3	XRCC6	22	42046801	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	118137	42046801	9257765	92	2209											
CASK	8573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	41469246	41469246	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gtctgtaagcgcatgaatctCttccaggctgtccagcacct	8	11	9	13	1	2	1	0	1	2	0	5	1	4	1	3	1	2	4	3	1	2	2	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001126054	exon12	c.G1066A	p.E356K	GAATCTCTTCCAG	.	75	24	108	0	.	.	T	41469246	C	T	41469246	3	4	16	1	0	0	0	0	1	0	0	0	2683	922	32	3	1778	3	CASK	23	41469246	Missense_Mutation	SNP	C	TCGA-W5-AA2W-01A-11D-A417-09		41469246	113801314	93	2210											
OTUD5	55593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48801512	48801512	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgatgaagcccttcttGtctcgtagggccttttcaaa	8	15	9	9	1	3	3	1	3	2	0	4	3	3	3	2	1	1	1	2	1	3	6	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001136157	exon2	c.C627A	p.D209E	CTTCTTGTCTCGT	.	33	13	58	0	.	.	T	48801512	G	T	48801512	3	4	16	1	0	0	0	0	1	0	0	0	11362	1368	48	3	1120	3	OTUD5	23	48801512	Missense_Mutation	SNP	G	TCGA-W5-AA2W-01A-11D-A417-09	7332266	48801512	106469048	94	2211											
CCNL2	81669	hgsc.bcm.edu	37	chr1	1326205	1326205	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgctctctggctggaaccGcacgaagacgtcggtgcgaa	9	7	14	11	5	1	1	0	0	1	1	3	5	1	2	1	3	3	3	1	3	3	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_030937	exon6	c.C700T	p.R234W	GGAACCGCACGAA	.	59	4	63	0	.	.	A	1326205	G	A	1326205	3	1	17	1	0	0	0	0	1	0	0	0	2954	1086	38	1	886	1	CCNL2	1	1326205	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		1326205	247924416	1	2212											
PLOD1	5351	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12017915	12017915	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagctgcagttgaactaccTgggcaactacatcccgcgct	10	8	9	14	2	0	1	0	1	0	0	1	1	1	1	2	1	6	5	2	1	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PLOD1	NM_000302	exon8	c.T758C	p.L253P	ACTACCTGGGCAA	.	46	15	46	1	.	75	C	12017915	T	C	12017915	3	2	17	1	0	0	0	0	1	0	0	0	12149	1580	55	4	788	4	PLOD1	1	12017915	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	10691710	12017915	237232706	2	2213											
AK2	204	hgsc.bcm.edu	37	chr1	33476435	33476435	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggccttctgatactaggCtgaaatagagaggaaacaag	14	8	11	8	0	1	3	0	2	1	1	1	5	1	4	2	3	2	1	2	3	6	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_013411	exon8	c.695-1G>T	.	ACTAGGCTGAAAT	.	70	8	74	0	.	.	A	33476435	C	A	33476435	5	1	17	1	0	0	0	0	0	0	1	0	437	811	28	3	8	3	AK2	1	33476435	Splice_Site	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	21458520	33476435	215774186	3	2214											
ZNF362	149076	bcgsc.ca	37	chr1	33741758	33741758	+	Silent	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccctcctcccaccatgccCagccaggtaagactgacgtc	8	6	7	20	1	0	2	0	1	0	1	3	2	2	2	7	1	2	1	7	1	1	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	ZNF362	NM_152493	exon3	c.C96A	p.P32P	CATGCCCAGCCAG	.	18	3	32	0	.	31	A	33741758	A	A	33741758	2	1	17	1	0	0	0	0	0	0	0	1	17925	581	21	3		3	ZNF362	1	33741758	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	265323	33741758	215508863	4	2215											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	34238182	34238182	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tcacttacacacgcagcctgGcttcttagccgaccattggt	8	11	8	14	2	2	0	1	0	1	0	2	1	2	0	3	2	3	2	3	2	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CSMD2,NS,carcinoma,0,1	CSMD2	NM_052896	exon13	c.C1714T	p.P572S	AGCCTGGCTTCTT	.	10	5	7	0	.	0	A	34238182	G	A	34238182	3	1	17	1	0	0	0	0	1	0	0	0	3970	1203	42	3	8977	3	CSMD2	1	34238182	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	496424	34238182	215012439	5	2216											
PTCH2	8643	ucsc.edu;bcgsc.ca	37	chr1	45295102	45295102	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gatagcctcccaccacacggGcagcactgacttcagagaac	12	5	9	15	1	1	2	1	1	0	1	2	4	2	2	3	1	3	2	3	1	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PTCH2	NM_001166292	exon9	c.C1187T	p.A396V	ACACGGGCAGCAC	.	32	4	28	0	.	96	A	45295102	G	A	45295102	3	1	17	1	0	0	0	0	1	0	0	0	12780	1203	42	3	2500	3	PTCH2	1	45295102	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	11056920	45295102	203955519	6	2217											
ST6GALNAC5	81849	hgsc.bcm.edu	37	chr1	77334298	77334298	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcaacagcagcagcaggcgtc	13	1	13	14	1	0	0	0	0	0	0	1	0	0	0	0	1	11	10	0	1	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ST6GALNAC5,rectum,carcinoma,0,1	ST6GALNAC5	NM_030965	exon2	c.G132A	p.Q44Q	GCAGCAGCAACAG	.	31	6	39	2	.	0	A	77334298	G	A	77334298	2	1	17	1	0	0	0	0	0	0	0	1	15283	962	34	3		3	ST6GALNAC5	1	77334298	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	32039196	77334298	171916323	7	2218											
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	chr1	145116152	145116152	+	RNA	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggaatagtagattgttatttCgttttttccctcccagtgca	8	17	8	8	1	0	1	0	0	0	1	3	2	2	2	2	1	1	4	2	1	4	8	rs74909635	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TTATTTCGTTTTT	.	32	4	25	0	.	.	T	145116152	C	T	145116152	1	4	17	0	1	0	0	0	0	0	0	0	14043	899	31	1		1	SEC22B	1	145116152	RNA	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	67781854	145116152	104134469	8	2219											
LCE1B	353132	hgsc.bcm.edu	37	chr1	152785258	152785258	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaggagggagtggccaGcactctggaggctgctgcta	7	8	18	8	0	1	0	0	0	1	0	1	4	1	4	1	6	3	4	1	6	1	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LCE1B,NS,carcinoma,0,1	LCE1B	NM_178349	exon1	c.G336A	p.Q112Q	TGGCCAGCACTCT	.	98	4	79	0	.	0	A	152785258	G	A	152785258	2	1	17	1	0	0	0	0	0	0	0	1	8699	962	34	3		3	LCE1B	1	152785258	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	7669106	152785258	96465363	9	2220											
IVL	3713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	152883128	152883128	+	Nonsense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cagatggggcagctgaagtaCctggaacagcaggaggggca	12	4	17	8	0	0	2	0	1	0	1	0	4	0	4	1	6	4	5	1	6	3	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	IVL,NS,carcinoma,0,1	IVL	NM_005547	exon2	c.C855G	p.Y285X	GAAGTACCTGGAA	.	65	19	61	0	.	0	G	152883128	C	G	152883128	4	3	17	1	0	0	0	0	0	1	0	0	7973	518	18	5	857	5	IVL	1	152883128	Nonsense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	97870	152883128	96367493	10	2221											
NUP210L	91181	ucsc.edu	37	chr1	153967582	153967582	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaagctgttgatgccagcaCtgcaaagagggtcaagagca	13	6	14	8	0	1	3	1	1	0	2	1	4	1	4	1	2	5	5	1	2	3	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	NUP210L	NM_207308	exon38	c.G5461A	p.V1821M	CCAGCACTGCAAA	.	38	4	24	0	.	181	T	153967582	C	T	153967582	3	4	17	1	0	0	0	0	1	0	0	0	10809	565	20	3	217	3	NUP210L	1	153967582	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	1084454	153967582	95283039	11	2222											
FAM129A	116496	hgsc.bcm.edu	37	chr1	184868427	184868427	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agggactgaagtttttgatgGcagcctcagttttccctaga	9	13	11	8	0	1	3	1	2	0	1	2	4	2	4	2	2	1	3	2	2	2	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_052966	exon2	c.C71T	p.A24V	TTGATGGCAGCCT	.	95	4	61	0	.	.	A	184868427	G	A	184868427	3	1	17	1	0	0	0	0	1	0	0	0	5467	1203	42	3	2767	3	FAM129A	1	184868427	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	30900845	184868427	64382194	12	2223											
HMCN1	83872	hgsc.bcm.edu;bcgsc.ca	37	chr1	186088384	186088384	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agatacacttgtgtcgctagGaatgcggctggctctgcaca	9	10	12	10	2	1	1	0	0	1	1	2	2	1	2	0	3	3	4	0	3	3	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_031935	exon78	c.G11910T	p.R3970S	CGCTAGGAATGCG	.	78	4	61	0	.	.	T	186088384	G	T	186088384	3	4	17	1	0	0	0	0	1	0	0	0	7261	1165	41	3	12220	3	HMCN1	1	186088384	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1219957	186088384	63162237	13	2224											
ANGEL2	90806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	213178743	213178743	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttggaatgtttgaagcaaaTagcacagccatcaggtttcc	12	12	9	8	0	1	1	1	1	0	0	2	2	2	2	2	2	3	4	2	2	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_144567	exon5	c.A766G	p.I256V	AGCAAATAGCACA	.	63	6	41	0	.	.	C	213178743	T	C	213178743	3	2	17	1	0	0	0	0	1	0	0	0	605	1406	49	4	888	4	ANGEL2	1	213178743	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	27090359	213178743	36071878	14	2225											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228444441	228444441	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ccacactcagctgcgaggtgGctcaggcccagacggaggtg	8	5	15	13	2	2	1	2	0	0	1	2	3	2	2	2	5	2	2	2	5	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001271223	exon16	c.G4675A	p.A1559T	GAGGTGGCTCAGG	.	36	4	31	0	.	.	A	228444441	G	A	228444441	3	1	17	1	0	0	0	0	1	0	0	0	10860	1203	42	3	4453	3	OBSCN	1	228444441	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	15265698	228444441	20806180	15	2226											
SPHAR	10638	hgsc.bcm.edu	37	chr1	229440935	229440935	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttagatattttgagttttgCtttttttatgccttgaatat	8	24	6	3	0	0	3	0	2	0	1	0	3	0	3	1	0	2	2	1	0	5	13	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006542	exon1	c.C54A	p.C18X	GTTTTGCTTTTTT	.	67	3	33	0	.	.	A	229440935	C	A	229440935	4	1	17	1	0	0	0	0	0	1	0	0	15101	805	28	3	56	3	SPHAR	1	229440935	Nonsense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	996494	229440935	19809686	16	2227											
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	233490614	233490614	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaccctcatattcgtccaTcgtttgccttaattctcgaa	10	14	5	12	3	2	1	1	0	1	1	6	2	3	1	3	0	1	1	3	0	4	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_032435	exon4	c.T1168A	p.S390T	CGTCCATCGTTTG	.	61	39	47	0	.	.	A	233490614	T	A	233490614	3	1	17	1	0	0	0	0	1	0	0	0	8301	1435	50	5	1182	5	KIAA1804	1	233490614	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	4049679	233490614	15760007	17	2228											
FMN2	56776	broad.mit.edu	37	chr1	240255531	240255531	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cacaaagaaggggagcggggGcaagaaggcgctaggcaagc	14	1	18	8	2	0	2	0	0	0	2	0	3	0	3	0	6	2	3	0	6	6	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	FMN2	NM_020066	exon1	c.G122A	p.G41D	GCGGGGGCAAGAA	.	27	3	18	0	.	451	A	240255531	G	A	240255531	3	1	17	1	0	0	0	0	1	0	0	0	5983	1203	42	3	124	3	FMN2	1	240255531	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	6764917	240255531	8995090	18	2229											
LPIN1	23175	bcgsc.ca	37	chr2	11913797	11913797	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gatgatattcctgaggaaaaCctctccctggctgtgattta	10	13	9	9	0	1	3	0	3	1	0	3	5	2	4	3	2	1	1	3	2	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	LPIN1	NM_001261428	exon6	c.C795T	p.N265N	GGAAAACCTCTCC	.	53	4	46	0	.	99	T	11913797	T	T	11913797	2	4	17	1	0	0	0	0	0	0	0	1	8963	506	18	3		3	LPIN1	2	11913797	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		11913797	231285576	19	2230											
CCDC142	84865	hgsc.bcm.edu;bcgsc.ca	37	chr2	74701921	74701921	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcgtggtctggacctcctGacaagcacctggtaaggcag	8	10	12	11	1	1	1	0	1	1	0	3	2	2	2	3	4	1	3	3	4	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_032779	exon9	c.C1984A	p.Q662K	CCTCCTGACAAGC	.	56	4	35	0	.	.	T	74701921	G	T	74701921	3	4	17	1	0	0	0	0	1	0	0	0	2794	1299	45	3	251	3	CCDC142	2	74701921	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	62788124	74701921	168497452	20	2231											
SEMA4F	10505	hgsc.bcm.edu	37	chr2	74900824	74900824	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccagcctttgtcgcagccGtggccttgagcccagccgaa	6	7	11	17	3	0	1	0	1	0	0	1	2	0	1	7	1	4	1	7	1	1	2	rs375402877		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SEMA4F,NS,carcinoma,0,1	SEMA4F	NM_004263	exon7	c.G691A	p.V231M	GCAGCCGTGGCCT	.	59	3	41	0	.	0	A	74900824	G	A	74900824	3	1	17	1	0	0	0	0	1	0	0	0	14089	1145	40	1	717	1	SEMA4F	2	74900824	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	198903	74900824	168298549	21	2232											
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	77745440	77745440	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttaggaggatcatggttcAtacctcacattccctggagc	9	13	9	10	0	3	0	3	0	0	0	4	3	4	3	2	4	2	1	2	4	2	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_024993	exon3	c.T1555C	p.X519R	TGGTTCATACCTC	.	76	13	56	0	.	.	G	77745440	A	G	77745440	3	3	17	1	0	0	0	0	1	0	0	0	9087	230	8	4	231	4	LRRTM4	2	77745440	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	2844616	77745440	165453933	22	2233											
CTNNA2	1496	hgsc.bcm.edu	37	chr2	80874884	80874884	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagaagaagccccttGtgaagagagaaaagcctgaa	16	5	11	9	0	0	6	0	2	0	4	1	8	1	6	4	0	2	0	4	0	6	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CTNNA2_ENST00000466387,NS,carcinoma,0,1	CTNNA2_ENST00000466387	NM_004389	exon18	c.G2605T	p.V869L	CCCCTTGTGAAGA	.	49	2	40	0	.	0	T	80874884	G	T	80874884	3	4	17	1	0	0	0	0	1	0	0	0	4037	1377	48	3	2463	3	CTNNA2	2	80874884	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	3129444	80874884	162324489	23	2234											
EIF5B	9669	hgsc.bcm.edu	37	chr2	100007024	100007024	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	taggttaaagctctcccgggGatgggcaccactatagatgt	10	10	12	9	1	1	1	0	0	1	1	2	2	1	2	2	4	1	3	2	4	5	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	EIF5B,NS,carcinoma,0,1	EIF5B	NM_015904	exon17	c.G2604C	p.G868G	CCCGGGGATGGGC	.	43	2	39	0	.	0	C	100007024	G	C	100007024	2	2	17	1	0	0	0	0	0	0	0	1	5072	1161	41	5		5	EIF5B	2	100007024	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	19132140	100007024	143192349	24	2235											
PAX8	7849	bcgsc.ca	37	chr2	113993051	113993051	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgaagggcgggaccccggagCcgacttgctgcagatccaaa	10	5	14	12	3	0	2	0	1	0	1	1	5	1	4	4	3	3	2	4	3	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PAX8	NM_003466	exon9	c.G1007A	p.G336D	CCGGAGCCGACTT	.	49	4	42	0	.	42	T	113993051	T	T	113993051	3	4	17	1	0	0	0	0	1	0	0	0	11532	739	26	3	361	3	PAX8	2	113993051	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	13986027	113993051	129206322	25	2236											
MARCO	8685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	119739044	119739044	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcatggggcctcctggagccCaggggagtaaaggtgacttc	8	8	15	10	0	1	1	1	1	0	0	3	3	2	3	3	6	1	1	3	6	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006770	exon9	c.C826A	p.Q276K	GGAGCCCAGGGGA	.	38	11	61	0	.	.	A	119739044	C	A	119739044	3	1	17	1	0	0	0	0	1	0	0	0	9361	595	21	3	860	3	MARCO	2	119739044	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	5745993	119739044	123460329	26	2237											
PRPF40A	55660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	153514468	153514468	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatctttgtctagttctgtCtttttcactttcccgatctt	4	22	5	10	1	6	1	1	1	5	0	7	2	7	1	1	0	0	1	1	0	1	7	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PRPF40A	NM_017892	exon25	c.G2635T	p.D879Y	TTCTGTCTTTTTC	.	106	40	93	1	.	149	A	153514468	C	A	153514468	3	1	17	1	0	0	0	0	1	0	0	0	12623	913	32	3	165	3	PRPF40A	2	153514468	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	33775424	153514468	89684905	27	2238											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160035180	160035180	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacagggtgcacagcagccaGgacatcctcagcaacatctc	12	5	9	15	0	2	0	1	0	1	0	4	1	3	1	2	2	5	3	2	2	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_033394	exon14	c.G2016A	p.Q672Q	CAGCCAGGACATC	.	34	9	36	0	.	.	A	160035180	G	A	160035180	2	1	17	1	0	0	0	0	0	0	0	1	15601	991	35	3		3	TANC1	2	160035180	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	6520712	160035180	83164193	28	2239											
TTN	7273	hgsc.bcm.edu	37	chr2	179434990	179434990	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctactggctcagattcaagaGgttcaccaacaccatatttg	12	11	7	11	0	3	2	3	0	0	2	3	2	3	2	2	2	2	2	2	2	4	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001267550	exon326	c.C75869A	p.P25290H	TCAAGAGGTTCAC	.	40	4	61	0	.	.	T	179434990	G	T	179434990	3	4	17	1	0	0	0	0	1	0	0	0	16797	1000	35	3	32258	3	TTN	2	179434990	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	19399810	179434990	63764383	29	2240											
TTN	7273	hgsc.bcm.edu	37	chr2	179611465	179611465	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcatctggctctagtaaaGatttatttcgataccatttc	10	18	5	8	1	3	1	1	0	2	1	5	2	3	1	1	1	1	2	1	1	5	8	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TTN_ENST00000360870,NS,carcinoma,0,1	TTN_ENST00000360870	NM_133379	exon46	c.C15662A	p.S5221Y	AGTAAAGATTTAT	.	50	4	49	0	.	0	T	179611465	G	T	179611465	3	4	17	1	0	0	0	0	1	0	0	0	16797	942	33	3	94635	3	TTN	2	179611465	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	176475	179611465	63587908	30	2241											
FARSB	10056	hgsc.bcm.edu	37	chr2	223497945	223497945	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgggaggcattgaaaggaCgacaccattgctatcataga	14	8	12	7	1	1	2	1	1	0	1	1	6	1	4	1	3	1	2	1	3	3	4	rs139596776	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FARSB,caecum,carcinoma,0,1	FARSB	NM_005687	exon7	c.G688A	p.V230I	AAAGGACGACACC	.	55	3	41	0	0.000	0	T	223497945	C	T	223497945	3	4	17	1	0	0	0	0	1	0	0	0	5713	536	19	1	1125	1	FARSB	2	223497945	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	43886480	223497945	19701428	31	2242											
PER2	8864	hgsc.bcm.edu	37	chr2	239166978	239166978	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcactggaccttagcgctggGacgtttgctgggaactcgca	7	10	13	11	3	1	0	1	0	0	0	2	3	1	3	1	3	3	4	1	3	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_022817	exon16	c.C1839A	p.V613V	CGCTGGGACGTTT	.	50	4	36	0	.	.	T	239166978	G	T	239166978	2	4	17	1	0	0	0	0	0	0	0	1	11777	1161	41	3		3	PER2	2	239166978	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	15669033	239166978	4032395	32	2243											
HTR1F	3355	ucsc.edu;bcgsc.ca	37	chr3	88040342	88040342	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattatgattacaatagtttGgattatatctgtttttatct	11	21	5	4	0	2	1	0	1	2	0	2	2	2	2	0	1	1	2	0	1	7	9	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	HTR1F	NM_000866	exon2	c.G443T	p.W148L	TAGTTTGGATTAT	.	22	4	27	0	.	66	T	88040342	G	T	88040342	3	4	17	1	0	0	0	0	1	0	0	0	7484	1357	47	3	445	3	HTR1F	3	88040342	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		88040342	109982088	33	2244											
CGGBP1	8545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	88104670	88104670	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	attctcattctcatatccatCaggaagatatgccctccgta	11	13	5	12	1	3	1	3	0	2	1	7	2	5	2	3	1	1	1	3	1	4	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001195308	exon4	c.G457A	p.D153N	ATCCATCAGGAAG	.	60	25	47	0	.	.	T	88104670	C	T	88104670	3	4	17	1	0	0	0	0	1	0	0	0	3324	826	29	3	50	3	CGGBP1	3	88104670	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	64328	88104670	109917760	34	2245											
CGGBP1	8545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	88104763	88104763	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agcacggactgctgggtgatCagccttctcaagtgggatgt	8	10	14	9	1	2	1	2	1	1	0	3	3	2	3	1	3	3	2	1	3	1	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CGGBP1_ENST00000462901,bladder,carcinoma,0,2	CGGBP1_ENST00000462901	NM_001195308	exon4	c.G364A	p.D122N	GGTGATCAGCCTT	.	83	49	39	0	.	0	T	88104763	C	T	88104763	3	4	17	1	0	0	0	0	1	0	0	0	3324	826	29	3	143	3	CGGBP1	3	88104763	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	93	88104763	109917667	35	2246											
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	99568867	99568867	+	Silent	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tacatcttttcttctacatcGgttttggacttgagcgccct	6	17	7	11	2	3	1	0	1	3	0	4	2	3	2	1	2	3	1	1	2	2	8	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FILIP1L_ENST00000354552,NS,carcinoma,0,2	FILIP1L_ENST00000354552	NM_182909	exon5	c.C1653G	p.T551T	TACATCGGTTTTG	.	33	12	17	0	.	0	C	99568867	G	C	99568867	2	2	17	1	0	0	0	0	0	0	0	1	5928	1103	39	5		5	FILIP1L	3	99568867	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	11464104	99568867	98453563	36	2247											
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631064	122631064	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcctccgtgtgcagccCgagacagatgtcctcacctg	6	9	10	16	2	1	2	1	0	0	2	4	3	4	2	6	0	3	1	6	0	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SEMA5B_ENST00000451055,right_upper_lobe,carcinoma,0,2	SEMA5B_ENST00000451055	NM_001256347	exon19	c.G3013A	p.G1005R	GCAGCCCGAGACA	.	7	5	7	1	.	0	T	122631064	C	T	122631064	3	4	17	1	0	0	0	0	1	0	0	0	14092	652	23	1	624	1	SEMA5B	3	122631064	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	23062197	122631064	75391366	37	2248											
HEG1	57493	broad.mit.edu	37	chr3	124738300	124738300	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgtcacatctgcagatGttgtgctgttggtcaagagc	7	14	11	9	0	3	2	2	0	1	2	4	2	4	2	1	1	3	4	1	1	1	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	HEG1	NM_020733	exon5	c.C1394A	p.T465K	GCAGATGTTGTGC	.	31	3	27	0	.	109	T	124738300	G	T	124738300	3	4	17	1	0	0	0	0	1	0	0	0	7085	1377	48	3	2803	3	HEG1	3	124738300	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2107236	124738300	73284130	38	2249											
AADAC	13	hgsc.bcm.edu	37	chr3	151545576	151545576	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tccagacaacatgtacctgtGgaatcaagtcatctcttcaa	13	11	6	11	0	4	1	3	0	1	1	6	2	5	2	2	1	2	1	2	1	5	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	AADAC,NS,carcinoma,0,1	AADAC	NM_001086	exon5	c.G816T	p.V272V	ACCTGTGGAATCA	.	43	2	28	0	.	0	T	151545576	G	T	151545576	2	4	17	1	0	0	0	0	0	0	0	1	10	1335	47	3		3	AADAC	3	151545576	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	26807276	151545576	46476854	39	2250											
GPR149	344758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154055683	154055683	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	agggagtatgaggctgtttcCcctaggtcacatgaaacaaa	13	9	11	8	0	1	2	1	2	0	0	2	3	2	3	2	3	1	3	2	3	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	GPR149	NM_001038705	exon4	c.G2001A	p.G667G	TGTTTCCCCTAGG	.	82	17	64	0	.	134	T	154055683	C	T	154055683	2	4	17	1	0	0	0	0	0	0	0	1	6694	610	22	3		3	GPR149	3	154055683	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	2510107	154055683	43966747	40	2251											
PSMD2	5708	hgsc.bcm.edu	37	chr3	184023829	184023846	+	Frame_Shift_Del	DEL	ATCTGTCCTGTAGGGAAG	ATCTGTCCTGTAGGGAAG	-																															agtatcctctgaccccttgaAtctgtcctgtagggaagggt																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	ATCTGTCCTGTAGGGAAG	ATCTGTCCTGTAGGGAAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002808	exon14	c.1703_1706del	p.568_569del	CCTTGAATCTGTC	.	45	6	51	0	.	.	-	184023846	ATCTGTCCTGTAGGGAAG	-	184023829	7	5	17	1	0	1	0	1	0	0	0	0	12747	116	4	0		0	PSMD2	3	184023829	Frame_Shift_Del	DEL	ATCTGTCCTGTAGGGAAG	TCGA-W5-AA2X-01A-11D-A417-09	29968146	184023829	13998601	41	2252											
EIF4G1	1981	hgsc.bcm.edu	37	chr3	184039769	184039770	+	Missense_Mutation	DNP	GA	GA	AG																															agaagaagaagaggaagaagGagaagcaggagaagcaggag																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001194946	exon11	c.A1419G	p.G473E	AGAAGGAGAAGCA	.	60	7	39	0	.	.	AG	184039770	GA	AG	184039769	3	1	17	1	0	0	0	0	1	0	0	0	5064	1174	41	3	1427	3	EIF4G1	3	184039769	Missense_Mutation	DNP	GA	TCGA-W5-AA2X-01A-11D-A417-09	15940	184039769	13982661	42	2253											
BCL6	604	hgsc.bcm.edu	37	chr3	187439688	187439688	+	RNA	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcagatacaaaatcgaGcctttaacgcagttttatat	13	12	7	9	2	0	1	0	0	0	1	1	2	0	1	2	0	4	3	2	0	6	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AATCGAGCCTTTA	.	84	3	51	0	.	.	T	187439688	G	T	187439688	1	4	17	0	1	0	0	0	0	0	0	0	1374	986	34	3		3	BCL6	3	187439688	RNA	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	3399919	187439688	10582742	43	2254											
MUC4	4585	hgsc.bcm.edu	37	chr3	195507064	195507064	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tggatgctgaggaagtgtcgGtgacaggaagaggggtggtg	9	8	21	3	1	0	3	0	2	0	1	1	6	0	6	0	7	1	1	0	7	2	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C11387G	p.T3796S	GTGTCGGTGACAG	.	92	5	63	0	.	0	C	195507064	G	C	195507064	3	2	17	1	0	0	0	0	1	0	0	0	10026	1261	44	5		5	MUC4	3	195507064	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	8067376	195507064	2515366	44	2255											
MUC4	4585	broad.mit.edu	37	chr3	195509879	195509879	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaggtggcgtgacctgtggAcactgaggaagcgtcggtga	9	7	18	7	3	0	4	0	3	0	1	1	6	0	6	1	5	1	0	1	5	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.T8572C	p.S2858P	CTGTGGACACTGA	.	103	9	100	1	.	1505	G	195509879	A	G	195509879	3	3	17	1	0	0	0	0	1	0	0	0	10026	275	10	4		4	MUC4	3	195509879	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	2815	195509879	2512551	45	2256											
HTT	3064	hgsc.bcm.edu	37	chr4	3076659	3076659	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcagcagcagcagcAgcaacagccgccaccgccgc	11	0	12	18	3	0	0	0	0	0	0	0	0	0	0	4	0	9	8	4	0	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002111	exon1	c.A107C	p.Q36P	AGCAGCAGCAACA	.	8	7	6	0	.	.	C	3076659	A	C	3076659	3	2	17	1	0	0	0	0	1	0	0	0	7501	188	7	4	109	4	HTT	4	3076659	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09		3076659	188077617	46	2257											
SEPSECS	51091	bcgsc.ca	37	chr4	25157778	25157778	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagttagactcataccagttGccataggaactacaaagcag	15	8	9	9	0	1	1	1	0	0	1	1	3	1	2	2	1	5	3	2	1	6	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	SEPSECS	NM_016955	exon4	c.C428T	p.A143V	CCAGTTGCCATAG	.	50	4	99	0	.	55	A	25157778	A	A	25157778	3	1	17	1	0	0	0	0	1	0	0	0	14112	1319	46	3	1109	3	SEPSECS	4	25157778	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	22081119	25157778	165996498	47	2258											
GK2	2712	hgsc.bcm.edu	37	chr4	80329033	80329033	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacaccacagcattgtagaGaggctctcctgttaacttgt	10	11	8	12	0	1	1	0	0	1	1	2	2	1	1	3	1	2	4	3	1	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GK2,NS,carcinoma,0,1	GK2	NM_033214	exon1	c.C322A	p.L108I	TGTAGAGAGGCTC	.	49	2	79	0	.	0	T	80329033	G	T	80329033	3	4	17	1	0	0	0	0	1	0	0	0	6463	942	33	3	1343	3	GK2	4	80329033	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	55171255	80329033	110825243	48	2259											
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	84337954	84337954	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccttacgagcacttcaGgatttgcattagctaagtgc	9	14	9	9	1	1	0	1	0	0	0	2	2	2	1	1	1	5	3	1	1	3	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_133636	exon17	c.C3128T	p.P1043L	ACTTCAGGATTTG	.	42	30	64	0	.	.	A	84337954	G	A	84337954	3	1	17	1	0	0	0	0	1	0	0	0	7088	1000	35	3	185	3	HELQ	4	84337954	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	4008921	84337954	106816322	49	2260											
FAT4	79633	hgsc.bcm.edu	37	chr4	126336935	126336935	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taaatgtccctgagaatttaGggacactacccagaacaatt	15	10	7	9	0	0	2	0	1	0	2	1	4	1	3	2	1	2	0	2	1	7	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FAT4,NS,NS,0,1	FAT4	NM_024582	exon5	c.G6817T	p.G2273W	AATTTAGGGACAC	.	34	2	36	0	.	0	T	126336935	G	T	126336935	3	4	17	1	0	0	0	0	1	0	0	0	5725	1000	35	3	6835	3	FAT4	4	126336935	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	41998981	126336935	64817341	50	2261											
SMARCA5	8467	broad.mit.edu	37	chr4	144451680	144451680	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tagttgagaggcttcatatgGtaagtattttggagtagtgt	10	16	13	2	0	1	1	1	1	0	1	1	3	1	2	0	3	0	5	0	3	5	9	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	SMARCA5	NM_003601	exon9	c.1158+1G>T	.	CATATGGTAAGTA	.	74	3	86	0	.	73	T	144451680	G	T	144451680	5	4	17	1	0	0	0	0	0	0	1	0	14825	1275	44	3	1193	3	SMARCA5	4	144451680	Splice_Site	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	18114745	144451680	46702596	51	2262											
OTUD4	54726	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	146065546	146065546	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgattttctctggacacatGgattgctactctgagaagct	10	14	9	8	0	2	2	0	2	2	1	3	5	2	4	0	2	3	2	0	2	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001102653	exon15	c.C1268A	p.P423Q	ACACATGGATTGC	.	41	4	42	0	.	.	T	146065546	G	T	146065546	3	4	17	1	0	0	0	0	1	0	0	0	11361	1348	47	3	1909	3	OTUD4	4	146065546	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1613866	146065546	45088730	52	2263											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5239928	5239928	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgggcactggaccgtggacTggcccggccggtacaaattt	8	8	14	11	3	0	0	0	0	0	0	0	2	0	2	3	6	1	2	3	6	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_139056	exon16	c.T2413A	p.W805R	GTGGACTGGCCCG	.	32	7	35	0	.	.	A	5239928	T	A	5239928	3	1	17	1	0	0	0	0	1	0	0	0	260	1580	55	5	2475	5	ADAMTS16	5	5239928	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09		5239928	175675332	53	2264											
MTRR	4552	broad.mit.edu	37	chr5	7885967	7885967	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggcagacacaaagaagaaaGgtaacagccctgatgctgtg	16	5	12	8	0	0	4	0	1	0	3	0	4	0	4	1	2	3	3	1	2	4	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	MTRR	NM_024010	exon7	c.G1138T	p.G380X	AAGAAAGGTAACA	.	62	4	43	0	.	74	T	7885967	G	T	7885967	5	4	17	1	0	0	0	0	0	0	1	0	10009	1014	35	3	1164	3	MTRR	5	7885967	Splice_Site	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2646039	7885967	173029293	54	2265											
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	10290721	10290724	+	Frame_Shift_Del	DEL	ATAT	ATAT	-																															attgggcaactgccagccaaAtatatcttgaatgacaatca																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	ATAT	ATAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_138809	exon2	c.152_155del	p.51_52del	AGCCAAATATATC	.	60	16	37	0	.	.	-	10290724	ATAT	-	10290721	7	5	17	1	0	1	0	1	0	0	0	0	3599	101	4	0	603	0	CMBL	5	10290721	Frame_Shift_Del	DEL	ATAT	TCGA-W5-AA2X-01A-11D-A417-09	2404754	10290721	170624539	55	2266											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	13865904	13865904	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atatattttctgtagaagatTtagttgcttctttatttcaa	11	21	5	4	0	3	2	1	0	2	2	3	2	3	2	0	0	1	3	0	0	7	12	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001369	exon27	c.A4228T	p.N1410Y	GAAGATTTAGTTG	.	70	33	59	0	.	.	A	13865904	T	A	13865904	3	1	17	1	0	0	0	0	1	0	0	0	4632	1841	64	5	9858	5	DNAH5	5	13865904	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	3575183	13865904	167049356	56	2267											
BRIX1	55299	hgsc.bcm.edu	37	chr5	34915888	34915888	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtggaggctttgcagttcaGgcgaagaagccaaaaagaaa	15	6	13	7	2	1	2	1	0	0	2	1	4	1	3	1	3	2	3	1	3	5	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018321	exon1	c.G45T	p.Q15H	AGTTCAGGCGAAG	.	85	3	84	0	.	.	T	34915888	G	T	34915888	3	4	17	1	0	0	0	0	1	0	0	0	1517	991	35	3	47	3	BRIX1	5	34915888	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	21049984	34915888	145999372	57	2268											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu	37	chr5	66427645	66427645	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgtgttacagggggAgactgtgctactttaatgaa	9	15	11	6	0	0	2	0	1	0	1	1	3	1	2	1	2	3	2	1	2	4	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001164664	exon16	c.A1959G	p.G653G	AGGGGGAGACTGT	.	88	4	91	0	.	.	G	66427645	A	G	66427645	2	3	17	1	0	0	0	0	0	0	0	1	9377	291	11	4		4	MAST4	5	66427645	Silent	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	31511757	66427645	114487615	58	2269											
APC	324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	112175530	112175530	+	Frame_Shift_Del	DEL	G	G	-																															agtgaaccatgcagtggaatGgtaagtggcattataagccc																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,1	.	NM_001127510	exon17	c.4238delT	p.M1413fs	TGGAATGGTAAGT	.	29	18	35	0	.	4158	-	112175530	G	-	112175530	7	5	17	1	0	1	0	1	0	0	0	0	759	1348	47	0	4297	0	APC	5	112175530	Frame_Shift_Del	DEL	G	TCGA-W5-AA2X-01A-11D-A417-09	45747885	112175530	68739730	59	2270											
P4HA2	8974	hgsc.bcm.edu	37	chr5	131531134	131531134	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaaattgcagcccccagatCagggaagacggtggcaccac	12	4	11	14	1	1	2	1	0	0	2	1	3	1	3	4	3	2	2	4	3	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	P4HA2,NS,carcinoma,0,1	P4HA2	NM_004199	exon13	c.G1411T	p.D471Y	CCAGATCAGGGAA	.	39	2	39	0	.	0	A	131531134	C	A	131531134	3	1	17	1	0	0	0	0	1	0	0	0	11404	826	29	3	208	3	P4HA2	5	131531134	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	19355604	131531134	49384126	60	2271											
TUBB2A	7280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3155891	3155891	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tgtctggtctgaagatctggCcgaagggtccagacctgaca	9	9	13	10	1	3	4	0	2	3	2	4	5	4	4	3	3	0	0	3	3	2	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001069	exon3	c.G245A	p.G82D	ATCTGGCCGAAGG	.	36	6	26	0	.	.	T	3155891	C	T	3155891	3	4	17	1	0	0	0	0	1	0	0	0	16816	739	26	3	1100	3	TUBB2A	6	3155891	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		3155891	167959176	61	2272											
ZSCAN16	80345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	28094609	28094609	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tactcatggacaagttggccCccttgggaaggccatatgaa	11	9	11	10	0	1	1	1	1	0	0	1	3	1	3	3	4	1	1	3	4	5	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_025231	exon3	c.C436A	p.P146T	TTGGCCCCCTTGG	.	49	22	43	0	.	.	A	28094609	C	A	28094609	3	1	17	1	0	0	0	0	1	0	0	0	18270	623	22	3	442	3	ZSCAN16	6	28094609	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	24938718	28094609	143020458	62	2273											
C6orf136	221545	hgsc.bcm.edu	37	chr6	30619191	30619191	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcttgtggggctgcccGtccacttgctctttttgcgg	1	13	15	12	3	1	0	0	0	1	0	2	0	2	0	2	5	3	3	2	5	0	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	C6orf136_ENST00000293604,NS,carcinoma,0,2	C6orf136_ENST00000293604	NM_001161376	exon4	c.G1255T	p.V419F	CTGCCCGTCCACT	.	24	3	14	0	.	0	T	30619191	G	T	30619191	3	4	17	1	0	0	0	0	1	0	0	0	2345	1145	40	2	1269	2	C6orf136	6	30619191	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2524582	30619191	140495876	63	2274											
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	34949681	34949681	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgcaacactaagaagcacaCccctctgcacttggcagcaa	13	6	7	15	0	1	1	0	0	1	1	1	1	1	1	2	1	5	5	2	1	4	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015245	exon4	c.C650T	p.T217I	AGCACACCCCTCT	.	35	11	24	0	.	.	T	34949681	C	T	34949681	3	4	17	1	0	0	0	0	1	0	0	0	682	507	18	3	664	3	ANKS1A	6	34949681	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	4330490	34949681	136165386	64	2275											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38816516	38816516	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agagtggctcgtagtacagaAcctttgggtttatcttgaag	10	13	12	6	1	1	3	0	1	1	2	2	3	1	3	1	2	2	4	1	2	5	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001206927	exon37	c.A5138T	p.N1713I	TACAGAACCTTTG	.	65	30	63	0	.	.	T	38816516	A	T	38816516	3	4	17	1	0	0	0	0	1	0	0	0	4634	43	2	5	4617	5	DNAH8	6	38816516	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	3866835	38816516	132298551	65	2276											
COL12A1	1303	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	75853032	75853032	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tacgcacttttccaggcacaGgttcccaaaagacattcata	13	10	6	12	1	1	1	1	0	0	1	3	1	3	1	2	2	1	3	2	2	4	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_004370	exon26	c.C4763T	p.P1588L	GGCACAGGTTCCC	.	42	4	39	0	.	.	A	75853032	G	A	75853032	3	1	17	1	0	0	0	0	1	0	0	0	3692	1000	35	3	4592	3	COL12A1	6	75853032	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	37036516	75853032	95262035	66	2277											
MDN1	23195	hgsc.bcm.edu	37	chr6	90472214	90472214	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cctcaaatgcctcccgtaagGgtagccaaataagcttatgg	12	9	9	11	1	1	0	1	0	0	0	2	0	2	0	4	2	3	3	4	2	6	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014611	exon16	c.C2180A	p.P727H	CGTAAGGGTAGCC	.	46	3	41	0	.	.	T	90472214	G	T	90472214	3	4	17	1	0	0	0	0	1	0	0	0	9465	1232	43	3	14958	3	MDN1	6	90472214	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	14619182	90472214	80642853	67	2278											
WISP3	8838	hgsc.bcm.edu	37	chr6	112389433	112389433	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	agaaatctcccacttatttgGaaaaaaaaatgtcttgtgca	16	12	6	7	0	2	1	0	0	2	1	3	2	2	2	1	1	1	1	1	1	6	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,1	.	NM_198239	exon4	c.G669A	p.W223X	TATTTGGAAAAAA	.	91	4	92	0	.	33	A	112389433	G	A	112389433	4	1	17	1	0	0	0	0	0	1	0	0	17434	1183	41	3	683	3	WISP3	6	112389433	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	21917219	112389433	58725634	68	2279											
HS3ST5	222537	hgsc.bcm.edu;bcgsc.ca	37	chr6	114379057	114379057	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttttcctataccactcaatGcccttaccataattctcatc	10	16	1	14	0	2	0	2	0	1	0	5	0	3	0	4	0	3	0	4	0	5	7	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_153612	exon2	c.C405A	p.G135G	CTCAATGCCCTTA	.	55	4	47	0	.	.	T	114379057	G	T	114379057	2	4	17	1	0	0	0	0	0	0	0	1	7409	1306	46	3		3	HS3ST5	6	114379057	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1989624	114379057	56736010	69	2280											
PTPRK	5796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	128304395	128304395	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaatctacatacctctgtctGgaccatattaatacgccgag	13	11	6	11	2	3	0	0	0	3	0	3	2	3	1	3	1	3	0	3	1	6	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001135648	exon24	c.C3397T	p.Q1133X	CTGTCTGGACCAT	.	48	20	31	0	.	.	A	128304395	G	A	128304395	4	1	17	1	0	0	0	0	0	1	0	0	12857	1357	47	3	975	3	PTPRK	6	128304395	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	13925338	128304395	42810672	70	2281											
WDR27	253769	hgsc.bcm.edu	37	chr6	170013745	170013745	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gaggctgttgggttgtaaatGatgaaccctataattttaag	12	14	11	4	0	0	2	0	2	0	0	0	3	0	2	1	2	1	4	1	2	6	7	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	WDR27_ENST00000448612,bladder,carcinoma,0,2	WDR27_ENST00000448612	NM_182552	exon22	c.C2231T	p.S744L	GTAAATGATGAAC	.	37	2	45	0	.	0	A	170013745	G	A	170013745	3	1	17	1	0	0	0	0	1	0	0	0	17344	1294	45	3	358	3	WDR27	6	170013745	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	41709350	170013745	1101322	71	2282											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	18631142	18631142	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtatttcaggggCagtggcaagtacagaagtaa	11	11	15	4	0	1	1	1	0	0	1	1	1	1	1	0	3	1	5	0	3	5	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001204144	exon7	c.C536T	p.A179V	CAGGGGCAGTGGC	.	24	8	21	0	.	.	T	18631142	C	T	18631142	3	4	17	1	0	0	0	0	1	0	0	0	7055	710	25	3	433	3	HDAC9	7	18631142	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		18631142	140507521	72	2283											
ABCA13	154664	hgsc.bcm.edu	37	chr7	48318055	48318055	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagagaatgttcaacaGagatggcaagacttctggat	14	11	11	5	0	2	3	1	0	1	3	2	6	2	4	0	2	1	3	0	2	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_152701	exon18	c.G7264T	p.E2422X	TCAACAGAGATGG	.	72	3	35	0	.	.	T	48318055	G	T	48318055	4	4	17	1	0	0	0	0	0	1	0	0	31	943	33	3	7163	3	ABCA13	7	48318055	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	29686913	48318055	110820608	73	2284											
ELN	2006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73474351	73474351	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tcctggcgttggcgtggctcCcggcattggccctggtggag	2	10	17	12	3	0	0	0	0	0	0	2	1	2	1	3	7	0	3	3	7	0	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001081754	exon23	c.C1565A	p.P522H	TGGCTCCCGGCAT	.	80	15	85	0	.	.	A	73474351	C	A	73474351	3	1	17	1	0	0	0	0	1	0	0	0	5099	623	22	3	1655	3	ELN	7	73474351	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	25156296	73474351	85664312	74	2285											
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73927158	73927158	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acacagcctgcccttcccacAgtgctcagcgctgtccaaac	9	7	7	18	1	1	0	1	0	0	0	3	0	3	0	4	0	5	2	4	0	1	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005685	exon3	c.124-2A>G	.	TCCCACAGTGCTC	.	33	15	36	0	.	.	G	73927158	A	G	73927158	5	3	17	1	0	0	0	0	0	0	1	0	6909	202	7	4	128	4	GTF2IRD1	7	73927158	Splice_Site	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	452807	73927158	85211505	75	2286											
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	127724776	127724776	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtgctcttcctccctggcagGcacccagttggagaagctga	7	9	12	13	0	1	2	0	1	1	1	3	3	3	2	3	3	2	5	3	3	1	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014390	exon19	c.G2111A	p.G704D	TGGCAGGCACCCA	.	17	6	14	0	.	.	A	127724776	G	A	127724776	3	1	17	1	0	0	0	0	1	0	0	0	14898	1217	42	3	2185	3	SND1	7	127724776	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	53797618	127724776	31413887	76	2287											
TMUB1	83590	broad.mit.edu	37	chr7	150778815	150778815	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttccagcccggaggggccggGctcggaccccggcgggcagg	4	3	19	15	5	0	0	0	0	0	0	2	2	1	2	5	8	1	2	5	8	0	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TMUB1	NM_031434	exon3	c.C562T	p.P188S	GGCCGGGCTCGGA	.	21	9	18	0	.	7	A	150778815	G	A	150778815	3	1	17	1	0	0	0	0	1	0	0	0	16324	1203	42	3	182	3	TMUB1	7	150778815	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	23054039	150778815	8359848	77	2288											
PAXIP1	22976	bcgsc.ca	37	chr7	154785435	154785435	+	Splice_Site	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cccactcaaaaaaaaggataCggcagaagagttccacactg	17	5	8	11	1	1	2	1	0	0	2	2	3	2	3	2	2	1	2	2	2	6	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PAXIP1	NM_007349	exon4	c.260+1G>A	.	AGGATACGGCAGA	.	59	5	54	0	.	150	T	154785435	T	T	154785435	5	4	17	1	0	0	0	0	0	0	1	0	11534	550	19	1	3024	1	PAXIP1	7	154785435	Splice_Site	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	4006620	154785435	4353228	78	2289											
LMBR1	64327	hgsc.bcm.edu	37	chr7	156480753	156480753	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaagttcttctcgaactGcagaggtgaattttcggacc	11	12	10	8	2	2	3	0	2	2	1	4	5	2	4	1	2	2	2	1	2	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LMBR1,NS,carcinoma,0,1	LMBR1	NM_022458	exon16	c.C1358T	p.A453V	CGAACTGCAGAGG	.	70	3	89	0	.	0	A	156480753	G	A	156480753	3	1	17	1	0	0	0	0	1	0	0	0	8881	1319	46	3	122	3	LMBR1	7	156480753	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1695318	156480753	2657910	79	2290											
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	156743095	156743095	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgactatattctgggaGccctggagtctgggaaaaat	10	12	12	7	0	3	1	0	1	3	0	3	4	3	4	1	3	1	0	1	3	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_138400	exon1	c.G664C	p.A222P	CTGGGAGCCCTGG	.	48	27	48	0	.	.	C	156743095	G	C	156743095	3	2	17	1	0	0	0	0	1	0	0	0	10577	971	34	5	666	5	NOM1	7	156743095	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	262342	156743095	2395568	80	2291											
POLB	5423	hgsc.bcm.edu;bcgsc.ca	37	chr8	42202490	42202490	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcagcatctgttataGcaaaatacccacacaaaata	20	7	5	9	0	1	0	0	0	1	0	1	1	1	0	1	0	4	4	1	0	10	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002690	exon3	c.G139T	p.A47S	GTTATAGCAAAAT	.	58	4	50	0	.	.	T	42202490	G	T	42202490	3	4	17	1	0	0	0	0	1	0	0	0	12237	971	34	3	149	3	POLB	8	42202490	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		42202490	104161532	81	2292											
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	chr8	61734399	61734399	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcacttccttatgaagacagCacgtgggagcggaggcagga	11	7	14	9	2	1	2	1	1	0	1	2	5	2	5	1	4	2	2	1	4	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017780	exon10	c.C2748T	p.S916S	AGACAGCACGTGG	.	49	4	49	0	.	.	T	61734399	C	T	61734399	2	4	17	1	0	0	0	0	0	0	0	1	3352	709	25	3		3	CHD7	8	61734399	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	19531909	61734399	84629623	82	2293											
TMEM55A	55529	hgsc.bcm.edu	37	chr8	92033557	92033557	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaaattgattagtgattggCacacacggcagtttattact	12	13	8	8	1	0	2	0	2	0	0	0	2	0	2	1	2	1	3	1	2	4	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TMEM55A,colon,carcinoma,0,1	TMEM55A	NM_018710	exon2	c.G182A	p.C61Y	GATTGGCACACAC	.	43	2	40	0	.	0	T	92033557	C	T	92033557	3	4	17	1	0	0	0	0	1	0	0	0	16241	710	25	3	615	3	TMEM55A	8	92033557	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	30299158	92033557	54330465	83	2294											
STK3	6788	hgsc.bcm.edu	37	chr8	99786981	99786981	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttacccttctccaagcttCtctaatacatcaaaaacttc	13	13	1	14	0	3	0	1	0	2	0	6	0	3	0	2	0	4	1	2	0	6	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STK3,NS,carcinoma,0,1	STK3	NM_001256312	exon4	c.G177T	p.E59D	AAGCTTCTCTAAT	.	40	2	23	0	.	0	A	99786981	C	A	99786981	3	1	17	1	0	0	0	0	1	0	0	0	15351	912	32	3	1422	3	STK3	8	99786981	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	7753424	99786981	46577041	84	2295											
AK3	50808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	4740952	4740952	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccacctgtgccccgcagcaTgttgtcccggagcaggtccc	5	7	11	18	2	0	0	0	0	0	0	2	1	2	1	6	2	3	4	6	2	0	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016282	exon1	c.A136G	p.M46V	GCAGCATGTTGTC	.	56	33	56	0	.	.	C	4740952	T	C	4740952	3	2	17	1	0	0	0	0	1	0	0	0	438	1464	51	4	567	4	AK3	9	4740952	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09		4740952	136472479	85	2296											
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	19063525	19063525	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatataccttttcaagtactGtaacactgtttctatctgat	12	17	4	8	0	3	1	1	1	2	0	3	1	3	1	1	0	3	3	1	0	7	8	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017645	exon13	c.C1430A	p.T477K	AGTACTGTAACAC	.	55	5	40	0	.	.	T	19063525	G	T	19063525	3	4	17	1	0	0	0	0	1	0	0	0	7011	1377	48	3	1457	3	HAUS6	9	19063525	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	14322573	19063525	122149906	86	2297											
TEK	7010	bcgsc.ca	37	chr9	27212798	27212798	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggagacggacccagcatttgCcattgccaatagcaccgcgt	10	7	11	13	3	0	1	0	0	0	1	0	3	0	2	4	2	4	2	4	2	2	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TEK	NM_000459	exon17	c.C2780T	p.A927V	CATTTGCCATTGC	.	17	3	27	0	.	250	T	27212798	T	T	27212798	3	4	17	1	0	0	0	0	1	0	0	0	15810	739	26	3	2846	3	TEK	9	27212798	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	8149273	27212798	114000633	87	2298											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	35802530	35802530	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttcagttcaaccatctcactCgcttcattggcgcctgcata	8	13	6	14	2	4	0	4	0	1	0	6	0	4	0	2	1	2	3	2	1	2	5	rs374250772		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_003995	exon11	c.C1741T	p.R581C	CTCACTCGCTTCA	.	15	5	15	0	.	.	T	35802530	C	T	35802530	3	4	17	1	0	0	0	0	1	0	0	0	10643	884	31	1	1783	1	NPR2	9	35802530	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	8589732	35802530	105410901	88	2299											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	74300266	74300266	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaaatagcttagtccaTgatggtttaaagtttccact	11	15	8	7	0	0	1	0	1	0	0	2	1	2	1	2	2	1	4	2	2	6	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_013390	exon24	c.A3999G	p.S1333S	AGTCCATGATGGT	.	38	12	47	0	.	.	C	74300266	T	C	74300266	2	2	17	1	0	0	0	0	0	0	0	1	16181	1451	51	4		4	TMEM2	9	74300266	Silent	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	38497736	74300266	66913165	89	2300											
PTCH1	5727	broad.mit.edu	37	chr9	98229635	98229635	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacaatgtccgtaaggtccaGcccgtctctcactcgggtgg	7	10	11	13	3	2	0	1	0	1	0	6	0	4	0	3	3	2	1	3	3	3	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PTCH1	NM_000264	exon15	c.C2323A	p.L775M	GGTCCAGCCCGTC	.	40	3	48	0	.	1850	T	98229635	G	T	98229635	3	4	17	1	0	0	0	0	1	0	0	0	12779	962	34	3	2056	3	PTCH1	9	98229635	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	23929369	98229635	42983796	90	2301											
RC3H2	54542	hgsc.bcm.edu	37	chr9	125613429	125613429	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccttttggtgctgctgtactGgatgcccattttccactgcc	4	15	9	13	0	0	0	0	0	0	0	1	1	1	1	4	2	5	3	4	2	1	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	RC3H2,right_lower_lobe,carcinoma,0,1	RC3H2	NM_001100588	exon20	c.C3311A	p.P1104Q	TGTACTGGATGCC	.	34	2	45	0	.	0	T	125613429	G	T	125613429	3	4	17	1	0	0	0	0	1	0	0	0	13219	1348	47	3	272	3	RC3H2	9	125613429	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	27383794	125613429	15600002	91	2302											
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	136305517	136305517	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gggaagatgagcatctccccTaacaccacctacccctccct	10	7	6	18	0	1	2	0	1	1	1	3	3	2	3	7	1	3	1	7	1	3	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_139027	exon16	c.T1839G	p.P613P	CTCCCCTAACACC	.	25	9	30	0	.	.	G	136305517	T	G	136305517	2	3	17	1	0	0	0	0	0	0	0	1	257	1509	53	4		4	ADAMTS13	9	136305517	Silent	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	10692088	136305517	4907914	92	2303											
SARDH	1757	hgsc.bcm.edu;bcgsc.ca	37	chr9	136550380	136550380	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcgttgctcaggtctgCgtccagcacctcctgcaaaa	7	9	10	15	2	2	0	1	0	1	0	5	0	4	0	4	2	4	4	4	2	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_007101	exon17	c.G2098A	p.A700T	GGTCTGCGTCCAG	.	80	5	58	0	.	.	T	136550380	C	T	136550380	3	4	17	1	0	0	0	0	1	0	0	0	13894	768	27	1	678	1	SARDH	9	136550380	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	244863	136550380	4663051	93	2304											
CSGALNACT2	55454	hgsc.bcm.edu	37	chr10	43659315	43659315	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgctttcctcatagtGagtctaattttcacaattac	9	17	7	8	0	3	1	2	1	1	0	4	1	4	1	1	0	2	1	1	0	4	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018590	exon5	c.G982T	p.E328X	CATAGTGAGTCTA	.	57	4	46	0	.	.	T	43659315	G	T	43659315	4	4	17	1	0	0	0	0	0	1	0	0	3964	1304	45	3	996	3	CSGALNACT2	10	43659315	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		43659315	91875432	94	2305											
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	69881563	69881563	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cttctgccaggataaccctcGaagtcccaccagctctaaag	11	8	7	15	1	2	0	0	0	2	0	4	2	3	1	4	1	3	1	4	1	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MYPN,NS,carcinoma,0,1	MYPN	NM_032578	exon2	c.G368A	p.R123Q	ACCCTCGAAGTCC	.	96	25	88	0	.	0	A	69881563	G	A	69881563	3	1	17	1	0	0	0	0	1	0	0	0	10146	1058	37	1	370	1	MYPN	10	69881563	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	26222248	69881563	65653184	95	2306											
LDB3	11155	hgsc.bcm.edu	37	chr10	88477868	88477868	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tatgagcaattctttgccccGctgtgtgccaagtgcaacac	9	11	9	12	1	1	1	0	1	1	0	1	1	1	1	3	0	5	3	3	0	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LDB3_ENST00000429277,NS,carcinoma,0,2	LDB3_ENST00000429277	NM_001171610	exon11	c.G1839T	p.P613P	TGCCCCGCTGTGT	.	32	2	21	0	.	0	T	88477868	G	T	88477868	2	4	17	1	0	0	0	0	0	0	0	1	8736	1074	38	2		2	LDB3	10	88477868	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	18596305	88477868	47056879	96	2307											
FAM35A	54537	broad.mit.edu	37	chr10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccttaaaatatcaactgataCagaatttctcagtataatta	17	14	3	7	0	2	2	2	1	1	1	3	2	2	2	1	0	2	1	1	0	9	7	rs3129516		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FAM35A,NS,carcinoma,0,3	FAM35A	NM_019054	exon3	c.C719A	p.T240K	CTGATACAGAATT	.	200	4	195	1	.	48	A	88911830	C	A	88911830	3	1	17	1	0	0	0	0	1	0	0	0	5589	478	17	3	721	3	FAM35A	10	88911830	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	433962	88911830	46622917	97	2308											
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111674853	111674853	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagttgaaaatcctggtgatTcacccttaaggagagaaaga	15	9	10	7	0	1	4	1	2	0	2	2	6	2	5	2	2	0	1	2	2	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001167604	exon2	c.A37T	p.N13Y	GGTGATTCACCCT	.	42	11	41	0	.	.	A	111674853	T	A	111674853	3	1	17	1	0	0	0	0	1	0	0	0	17502	1783	62	5	2043	5	XPNPEP1	10	111674853	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	22763023	111674853	23859894	98	2309											
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	112352927	112352927	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ctcttatttgtcgtagcatgGaagtttcaacccagctggcc	8	13	9	11	1	2	0	1	0	1	0	3	1	2	1	2	2	3	4	2	2	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005445	exon18	c.G1909T	p.E637X	AGCATGGAAGTTT	.	59	20	47	0	.	.	T	112352927	G	T	112352927	4	4	17	1	0	0	0	0	0	1	0	0	14838	1175	41	3	1979	3	SMC3	10	112352927	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	678074	112352927	23181820	99	2310											
OR52I1	390037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4615690	4615690	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acactacaagagaattctcaCgcctcaagtgatgctgggaa	14	8	9	10	1	2	2	2	1	1	1	3	4	2	3	1	1	2	1	1	1	5	2	rs202168611	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR52I1,NS,carcinoma,0,1	OR52I1	NM_001005169	exon1	c.C422A	p.T141K	TTCTCACGCCTCA	.	25	8	32	0	.	0	A	4615690	C	A	4615690	3	1	17	1	0	0	0	0	1	0	0	0	11168	536	19	2	424	2	OR52I1	11	4615690	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		4615690	130390826	100	2311											
OR52E8	390079	hgsc.bcm.edu	37	chr11	5878458	5878458	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaacaaccatgtacaGgctcctcaggacagcaatgc	13	6	10	12	0	1	0	1	0	0	0	2	2	2	2	2	3	5	3	2	3	4	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	42	2	33	1	.	0	A	5878458	G	A	5878458	2	1	17	1	0	0	0	0	0	0	0	1	11166	991	35	3		3	OR52E8	11	5878458	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1262768	5878458	129128058	101	2312											
DENND5A	23258	hgsc.bcm.edu;bcgsc.ca	37	chr11	9192183	9192183	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggttgactcacttgttgctgGctggcccagtggaaagtaca	8	11	13	9	0	1	1	1	1	0	0	1	2	1	2	1	4	2	5	1	4	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015213	exon9	c.C2048T	p.A683V	TTGCTGGCTGGCC	.	66	4	53	0	.	.	A	9192183	G	A	9192183	3	1	17	1	0	0	0	0	1	0	0	0	4464	1203	42	3	1875	3	DENND5A	11	9192183	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	3313725	9192183	125814333	102	2313											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	19890524	19890524	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcagctaagggaataaacatCcaggggctgtctgcagaagg	13	6	14	8	0	1	1	0	0	1	1	2	2	2	2	1	4	3	4	1	4	5	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_145117	exon4	c.C492A	p.I164I	AAACATCCAGGGG	.	21	7	16	0	.	.	A	19890524	C	A	19890524	2	1	17	1	0	0	0	0	0	0	0	1	10232	845	30	3		3	NAV2	11	19890524	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	10698341	19890524	115115992	103	2314											
MS4A10	341116	hgsc.bcm.edu	37	chr11	60561564	60561564	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tccccgatctggagaatgtaCcccaactccacggtgagtac	10	8	9	14	2	1	2	0	1	1	1	3	4	3	2	5	2	3	2	5	2	4	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MS4A10,NS,carcinoma,0,1	MS4A10	NM_206893	exon5	c.C480T	p.Y160Y	AATGTACCCCAAC	.	47	2	35	0	.	0	T	60561564	C	T	60561564	2	4	17	1	0	0	0	0	0	0	0	1	9904	518	18	3		3	MS4A10	11	60561564	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	40671040	60561564	74444952	104	2315											
STIP1	10963	hgsc.bcm.edu	37	chr11	63965024	63965024	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctttgtgagaaggccattGaagtggggagagaaaaccga	14	7	15	5	1	0	3	0	2	0	2	0	7	0	4	2	3	2	1	2	3	4	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STIP1,rectum,carcinoma,0,1	STIP1	NM_006819	exon7	c.G859T	p.E287X	GCCATTGAAGTGG	.	24	2	23	0	.	0	T	63965024	G	T	63965024	4	4	17	1	0	0	0	0	0	1	0	0	15341	1291	45	3	885	3	STIP1	11	63965024	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	3403460	63965024	71041492	105	2316											
CATSPER1	117144	ucsc.edu;bcgsc.ca	37	chr11	65792768	65792768	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggaccgagtcatgctGtgagccgagccccgtgggtg	6	7	17	11	3	1	1	1	1	0	0	1	5	1	3	4	3	3	1	4	3	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	CATSPER1	NM_053054	exon1	c.C1083A	p.H361Q	CATGCTGTGAGCC	.	42	4	38	0	.	101	T	65792768	G	T	65792768	3	4	17	1	0	0	0	0	1	0	0	0	2705	1368	48	3	1307	3	CATSPER1	11	65792768	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1827744	65792768	69213748	106	2317											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu	37	chr11	66258758	66258758	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tctgaggtgacttccaagctGaagagctatgaattccgggg	10	10	13	8	1	1	5	0	4	1	1	3	5	3	5	2	3	2	2	2	3	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_130443	exon7	c.G702A	p.L234L	CAAGCTGAAGAGC	.	80	8	17	0	.	.	A	66258758	G	A	66258758	2	1	17	1	0	0	0	0	0	0	0	1	4754	1277	45	3		3	DPP3	11	66258758	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	465990	66258758	68747758	107	2318											
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66625573	66625573	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgggagcctccggggccccGtcaatctgcagcacctcatc	6	6	11	18	3	3	0	2	0	1	0	5	1	4	1	6	3	3	2	6	3	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_024036	exon1	c.G358A	p.V120I	GGCCCCGTCAATC	.	119	9	29	0	.	.	A	66625573	G	A	66625573	3	1	17	1	0	0	0	0	1	0	0	0	8985	1145	40	1	360	1	LRFN4	11	66625573	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	366815	66625573	68380943	108	2319											
FOLR3	2352	hgsc.bcm.edu	37	chr11	71850156	71850156	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttatccaggacagctgtctCtgagtgctcacccaacctgg	8	11	9	13	0	2	1	1	1	1	0	4	2	3	2	3	2	3	2	3	2	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	p.S149Y	.	.	CTGTCTCTGAGTG	.	110	4	64	0	.	.	A	71850156	C	A	71850156	3	1	17	1	0	0	0	0	1	0	0	0	6016	900	32	3	324	3	FOLR3	11	71850156	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	5224583	71850156	63156360	109	2320											
PDGFD	80310	hgsc.bcm.edu	37	chr11	103814350	103814350	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaatcagagtgggatccGttactgatggagagttatag	11	10	13	7	2	1	3	1	1	0	2	2	5	2	4	2	2	1	3	2	2	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	PDGFD_ENST00000393158,colon,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon5	c.C602T	p.T201M	GGATCCGTTACTG	.	43	2	40	0	.	0	A	103814350	G	A	103814350	3	1	17	1	0	0	0	0	1	0	0	0	11707	1145	40	1	522	1	PDGFD	11	103814350	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	31964194	103814350	31192166	110	2321											
OR10G9	219870	hgsc.bcm.edu	37	chr11	123893737	123893737	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtccaagaccagcctCgtgacagcgttcatcctcac	11	8	8	14	2	2	2	2	1	0	1	5	3	4	2	4	0	2	1	4	0	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR10G9,NS,carcinoma,0,1	OR10G9	NM_001001953	exon1	c.C18A	p.L6L	CAGCCTCGTGACA	.	40	4	64	1	.	0	A	123893737	C	A	123893737	2	1	17	1	0	0	0	0	0	0	0	1	10952	871	31	2		2	OR10G9	11	123893737	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	20079387	123893737	11112779	111	2322											
DCP1B	196513	hgsc.bcm.edu	37	chr12	2062323	2062323	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcctaattggaagcttctcTtgctgctgctgctgctgctg	4	15	11	11	0	1	0	0	0	1	0	2	1	1	1	1	1	8	7	1	1	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	35	3	41	0	.	63	C	2062323	T	C	2062323	2	2	17	1	0	0	0	0	0	0	0	1	4322	1606	56	4		4	DCP1B	12	2062323	Silent	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09		2062323	131789572	112	2323											
TAS2R30	259293	hgsc.bcm.edu	37	chr12	11286072	11286072	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcagaacatgaagacaggttGcttttccagcctcccaaaat	13	9	8	11	0	0	3	0	1	0	2	2	3	2	3	3	1	3	3	3	1	4	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TAS2R30,NS,carcinoma,0,1	TAS2R30	NM_001097643	exon1	c.C772A	p.Q258K	CAGGTTGCTTTTC	.	112	8	101	2	.	0	T	11286072	G	T	11286072	3	4	17	1	0	0	0	0	1	0	0	0	15630	1328	46	3	191	3	TAS2R30	12	11286072	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	9223749	11286072	122565823	113	2324											
GYS2	2998	hgsc.bcm.edu	37	chr12	21711151	21711151	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taccttgactctatctgtgcGgttgttgaaaagtccaatcc	9	14	8	10	1	2	2	0	2	2	0	4	2	4	2	3	1	2	2	3	1	5	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GYS2,NS,carcinoma,0,2	GYS2	NM_021957	exon11	c.C1405A	p.R469S	CTGTGCGGTTGTT	.	47	2	39	0	.	0	T	21711151	G	T	21711151	3	4	17	1	0	0	0	0	1	0	0	0	6954	1116	39	2	730	2	GYS2	12	21711151	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	10425079	21711151	112140744	114	2325											
LIMA1	51474	ucsc.edu;bcgsc.ca	37	chr12	50625494	50625494	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcagctgctttctggtacCttcagagaagggaaggaaag	11	10	12	8	0	3	1	2	0	1	1	3	4	3	3	1	3	3	3	1	3	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	LIMA1	NM_001113546	exon4	c.120-1G>A	.	TGGTACCTTCAGA	.	34	4	32	0	.	67	T	50625494	C	T	50625494	5	4	17	1	0	0	0	0	0	0	1	0	8836	695	24	3	2199	3	LIMA1	12	50625494	Splice_Site	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	28914343	50625494	83226401	115	2326											
KRT7	3855	hgsc.bcm.edu	37	chr12	52629096	52629096	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgcaggtggatgggggccGcctggaggcggagctgcgga	6	5	21	9	3	0	0	0	0	0	0	0	4	0	4	2	8	3	2	2	8	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005556	exon2	c.G482A	p.R161H	GGGGCCGCCTGGA	.	89	4	18	0	.	.	A	52629096	G	A	52629096	3	1	17	1	0	0	0	0	1	0	0	0	8526	1087	38	1	488	1	KRT7	12	52629096	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2003602	52629096	81222799	116	2327											
NACA	4666	hgsc.bcm.edu	37	chr12	57113583	57113583	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agaggtatctctggagaagaGgatgtactttggaaagaagg	14	9	15	3	0	1	4	0	0	1	4	2	7	1	6	0	5	1	2	0	5	5	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NACA_ENST00000550952,NS,carcinoma,0,2	NACA_ENST00000550952	NM_001113203	exon3	c.C1731A	p.S577S	AGAAGAGGATGTA	.	43	2	41	0	.	0	T	57113583	G	T	57113583	2	4	17	1	0	0	0	0	0	0	0	1	10181	987	35	3		3	NACA	12	57113583	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	4484487	57113583	76738312	117	2328											
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	58121322	58121322	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	cggtggatgccagaacactcGatgcagatgagggcgcccag	10	5	15	11	3	0	3	0	1	0	2	1	5	0	4	2	3	3	1	2	3	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	AGAP2,colon,carcinoma,0,1	AGAP2	NM_001122772	exon17	c.C2901G	p.I967M	ACACTCGATGCAG	.	416	38	33	0	.	0	C	58121322	G	C	58121322	3	2	17	1	0	0	0	0	1	0	0	0	367	1048	37	5	689	5	AGAP2	12	58121322	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1007739	58121322	75730573	118	2329											
AGAP2	116986	broad.mit.edu	37	chr12	58131300	58131302	+	In_Frame_Del	DEL	CGG	CGG	-																															agctgtagagccccctccccCggcggcggcggcggtggcgg																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	AGAP2	NM_001122772	exon1	c.728_730del	p.243_244del	CTCCCCCGGCGGC	.	377	5	34	0	.	167	-	58131302	CGG	-	58131300	7	5	17	1	0	1	0	1	0	0	0	0	367	652	23	0	2924	0	AGAP2	12	58131300	In_Frame_Del	DEL	CGG	TCGA-W5-AA2X-01A-11D-A417-09	9978	58131300	75720595	119	2330											
NAP1L1	4673	hgsc.bcm.edu	37	chr12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggtcttctttttcttcatctTttttctcatcttcaatcttg	4	24	3	10	0	9	0	3	0	7	0	10	0	9	0	0	1	0	0	0	1	1	9	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NAP1L1,NS,carcinoma,0,1	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	TCATCTTTTTTCT	.	36	3	16	0	.	0	C	76449901	T	C	76449901	3	2	17	1	0	0	0	0	1	0	0	0	10204	1841	64	4	741	4	NAP1L1	12	76449901	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	18318601	76449901	57401994	120	2331											
KIAA1033	23325	hgsc.bcm.edu	37	chr12	105558483	105558483	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttcagagcagacaagactgCggctgaagaaaaccaagaaa	18	4	10	9	1	1	6	1	1	0	5	1	6	1	6	1	1	3	2	1	1	6	1	rs199807811	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015275	exon32	c.C3419T	p.A1140V	AGACTGCGGCTGA	.	37	4	44	0	0.001	.	T	105558483	C	T	105558483	3	4	17	1	0	0	0	0	1	0	0	0	8248	768	27	1	3545	1	KIAA1033	12	105558483	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	29108582	105558483	28293412	121	2332											
CCDC42B	387885	hgsc.bcm.edu	37	chr12	113593196	113593196	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cagcctcccaccctggacatCgaggacacggagggacagct	10	4	12	15	2	0	0	0	0	0	0	2	5	1	4	3	4	2	1	3	4	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001144872	exon6	c.C822T	p.I274I	GGACATCGAGGAC	.	51	3	68	0	.	.	T	113593196	C	T	113593196	2	4	17	1	0	0	0	0	0	0	0	1	2834	874	31	1		1	CCDC42B	12	113593196	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	8034713	113593196	20258699	122	2333											
TAOK3	51347	bcgsc.ca	37	chr12	118619240	118619240	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gctcgatggacgagttgttgGcatgcgtctccacctccttc	5	12	11	13	3	1	0	0	0	1	0	5	3	2	1	3	2	1	4	3	2	0	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TAOK3	NM_016281	exon15	c.C1502T	p.A501V	TTGTTGGCATGCG	.	20	3	49	0	.	151	A	118619240	A	A	118619240	3	1	17	1	0	0	0	0	1	0	0	0	15606	1203	42	3	1222	3	TAOK3	12	118619240	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	5026044	118619240	15232655	123	2334											
OR4K1	79544	hgsc.bcm.edu	37	chr14	20404579	20404579	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagtggtcattcttttcttcGggccttgcatttatttctat	5	20	7	9	1	4	0	1	0	3	0	5	0	4	0	1	2	1	1	1	2	2	9	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR4K1,NS,carcinoma,0,1	OR4K1	NM_001004063	exon1	c.G754T	p.G252W	TTCTTCGGGCCTT	.	47	2	60	0	.	0	T	20404579	G	T	20404579	3	4	17	1	0	0	0	0	1	0	0	0	11115	1116	39	2	756	2	OR4K1	14	20404579	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		20404579	86944961	124	2335											
ESR2	2100	hgsc.bcm.edu	37	chr14	64749427	64749427	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atacagatgtgataactggcGatggaccactaaaggagaaa	17	7	11	6	1	0	3	0	1	0	2	0	6	0	4	1	3	2	0	1	3	5	3	rs147382781	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ESR2_ENST00000554572,mucosal,malignant_melanoma,0,2	ESR2_ENST00000554572	NM_001214902	exon1	c.C277A	p.R93S	ACTGGCGATGGAC	.	35	2	32	0	.	0	T	64749427	G	T	64749427	3	4	17	1	0	0	0	0	1	0	0	0	5285	1058	37	2	1433	2	ESR2	14	64749427	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	44344848	64749427	42600113	125	2336											
MPP5	64398	hgsc.bcm.edu	37	chr14	67787063	67787063	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actgtggccagaatgaattgCgtcagaggctcatgaacaaa	14	8	11	8	1	2	4	2	2	0	2	2	4	2	4	1	2	2	1	1	2	4	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MPP5,NS,carcinoma,0,1	MPP5	NM_022474	exon12	c.C1486T	p.R496C	GAATTGCGTCAGA	.	33	2	39	0	.	0	T	67787063	C	T	67787063	3	4	17	1	0	0	0	0	1	0	0	0	9786	768	27	1	1524	1	MPP5	14	67787063	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	3037636	67787063	39562477	126	2337											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	92470476	92470476	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taattcctgcccaaaattttTgagtttggtttcattctgct	8	19	6	8	0	2	1	1	1	1	0	3	1	3	1	2	1	2	3	2	1	3	7	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_004239	exon11	c.A3844T	p.K1282X	AATTTTTGAGTTT	.	37	10	32	0	.	.	A	92470476	T	A	92470476	4	1	17	1	0	0	0	0	0	1	0	0	16616	1821	63	5	2139	5	TRIP11	14	92470476	Nonsense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	24683413	92470476	14879064	127	2338											
AQR	9716	bcgsc.ca	37	chr15	35185921	35185921	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gggaagttgtggtagatgttGgatatgatctgaactgccac	10	12	14	5	0	1	3	0	2	1	1	1	5	1	5	1	3	2	3	1	3	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	AQR	NM_014691	exon23	c.C2514A	p.S838S	GATGTTGGATATG	.	78	4	72	0	.	139	T	35185921	T	T	35185921	2	4	17	1	0	0	0	0	0	0	0	1	832	1335	47	3		3	AQR	15	35185921	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		35185921	67345471	128	2339											
ZNF280D	54816	hgsc.bcm.edu	37	chr15	56959057	56959057	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtttacttgtattagattttGcaggatttttagcagttata	10	20	8	3	0	0	1	0	0	0	1	0	2	0	2	0	1	3	5	0	1	6	12	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017661	exon15	c.C1673T	p.A558V	GATTTTGCAGGAT	.	46	2	44	0	.	.	A	56959057	G	A	56959057	3	1	17	1	0	0	0	0	1	0	0	0	17875	1319	46	3	1298	3	ZNF280D	15	56959057	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	21773136	56959057	45572335	129	2340											
CSPG4	1464	bcgsc.ca	37	chr15	75968449	75968449	+	Silent	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agagtgagactgtcacctgcGgggccgggggccctcccctc	5	6	15	15	2	1	2	1	1	0	2	3	3	2	2	5	4	1	0	5	4	0	0	rs367613285	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	CSPG4	NM_001897	exon10	c.C6411A	p.P2137P	ACCTGCGGGGCCG	.	45	4	41	0	.	175	T	75968449	T	T	75968449	2	4	17	1	0	0	0	0	0	0	0	1	3985	1103	39	2		2	CSPG4	15	75968449	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	19009392	75968449	26562943	130	2341											
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78882199	78882199	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtcatcaggtacaatGgcactgtcacctggactcca	13	8	8	12	0	3	0	3	0	0	0	4	1	4	1	2	3	2	2	2	3	3	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_000745	exon5	c.G466T	p.G156C	TACAATGGCACTG	.	42	4	36	0	.	.	T	78882199	G	T	78882199	3	4	17	1	0	0	0	0	1	0	0	0	3408	1348	47	3	484	3	CHRNA5	15	78882199	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2913750	78882199	23649193	131	2342											
VPS33B	26276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91544680	91544680	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggccagagaactgaaggcaTcagtaatctttcctggggaa	12	9	12	8	0	2	2	1	1	1	1	3	4	3	3	2	4	1	2	2	4	4	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018668	exon19	c.A1418G	p.D473G	AAGGCATCAGTAA	.	45	23	42	0	.	.	C	91544680	T	C	91544680	3	2	17	1	0	0	0	0	1	0	0	0	17262	1435	50	4	455	4	VPS33B	15	91544680	Missense_Mutation	SNP	T	TCGA-W5-AA2X-01A-11D-A417-09	12662481	91544680	10986712	132	2343											
POLR3E	55718	broad.mit.edu	37	chr16	22337151	22337151	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaggcccagcagaaccacgCgttgctggagcgggagctgc	9	4	15	13	3	0	1	0	0	0	1	0	3	0	3	2	3	6	4	2	3	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	POLR3E,rectum,carcinoma,+1,1	POLR3E	NM_001258033	exon18	c.C1418T	p.A473V	ACCACGCGTTGCT	.	50	5	46	0	.	62	T	22337151	C	T	22337151	3	4	17	1	0	0	0	0	1	0	0	0	12280	768	27	1	1484	1	POLR3E	16	22337151	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		22337151	68017602	133	2344											
ITGAX	3687	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	31384573	31384573	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcacctgatacccagcttGaagtccctgctggtggggag	7	10	12	12	0	1	2	1	2	0	0	2	3	2	3	3	3	3	2	3	3	2	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_000887	exon20	c.G2370T	p.L790F	CAGCTTGAAGTCC	.	30	4	22	0	.	.	T	31384573	G	T	31384573	3	4	17	1	0	0	0	0	1	0	0	0	7933	1281	45	3	2448	3	ITGAX	16	31384573	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	9047422	31384573	58970180	134	2345											
GNAO1	2775	hgsc.bcm.edu;bcgsc.ca	37	chr16	56377816	56377816	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtctttgatgctgtgaCggacgtcatcatcgccaaaa	9	13	10	9	3	3	2	2	2	1	0	4	3	3	3	1	1	1	2	1	1	2	2	rs200947037		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GNAO1_ENST00000262494,lower_third,carcinoma,0,1	GNAO1_ENST00000262494	NM_138736	exon8	c.C1019T	p.T340M	CTGTGACGGACGT	.	15	3	21	0	.	0	T	56377816	C	T	56377816	3	4	17	1	0	0	0	0	1	0	0	0	6550	536	19	1	1049	1	GNAO1	16	56377816	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	24993243	56377816	33976937	135	2346											
CKLF	51192	hgsc.bcm.edu	37	chr16	66597060	66597060	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctggtaacaacagtattcatGctcatcgtatctgtgttggc	9	14	9	9	1	3	0	2	0	1	0	4	0	3	0	0	2	3	5	0	2	4	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CKLF,NS,carcinoma,0,1	CKLF	NM_001040138	exon3	c.G273T	p.M91I	ATTCATGCTCATC	.	45	2	45	0	.	0	T	66597060	G	T	66597060	3	4	17	1	0	0	0	0	1	0	0	0	3470	1319	46	3	283	3	CKLF	16	66597060	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	10219244	66597060	23757693	136	2347											
FUK	197258	hgsc.bcm.edu	37	chr16	70497537	70497537	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgaccctagaactggaagtgCggcagaagcgggagcagatc	12	5	15	9	2	0	4	0	1	0	3	1	6	0	6	1	3	4	2	1	3	4	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FUK_ENST00000428974,NS,carcinoma,0,3	FUK_ENST00000428974	NM_145059	exon3	c.C94T	p.R32W	GAAGTGCGGCAGA	.	41	2	30	0	.	0	T	70497537	C	T	70497537	3	4	17	1	0	0	0	0	1	0	0	0	6131	759	27	1	100	1	FUK	16	70497537	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	3900477	70497537	19857216	137	2348											
SMYD4	114826	hgsc.bcm.edu	37	chr17	1703342	1703342	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cttctagctgtctgcacagtGcagaaacacagagagcacag	13	7	10	11	0	2	2	0	0	2	2	2	3	2	2	0	0	5	4	0	0	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SMYD4,NS,carcinoma,0,1	SMYD4	NM_052928	exon5	c.C1346T	p.A449V	CACAGTGCAGAAA	.	31	2	39	0	.	0	A	1703342	G	A	1703342	3	1	17	1	0	0	0	0	1	0	0	0	14878	1319	46	3	1096	3	SMYD4	17	1703342	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		1703342	79491868	138	2349											
SLC13A5	284111	hgsc.bcm.edu	37	chr17	6599187	6599187	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	gggccccagcttccggtactCctcctgcagcaccttgaggg	5	8	12	16	1	0	1	0	1	0	0	3	1	3	1	6	3	4	4	6	3	1	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SLC13A5,NS,carcinoma,0,1	SLC13A5	NM_001143838	exon7	c.G913A	p.E305K	GGTACTCCTCCTG	.	29	3	15	0	.	0	T	6599187	C	T	6599187	3	4	17	1	0	0	0	0	1	0	0	0	14450	864	30	3	817	3	SLC13A5	17	6599187	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	4895845	6599187	74596023	139	2350											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26948452	26948452	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ccatgccgcccactgcctgcCcactctccatcagctcctgc	5	8	6	22	1	2	0	1	0	1	0	4	0	3	0	7	0	5	1	7	0	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014680	exon27	c.G5024T	p.G1675V	GCCTGCCCACTCT	.	31	4	25	0	.	.	A	26948452	C	A	26948452	3	1	17	1	0	0	0	0	1	0	0	0	8196	623	22	3	1735	3	KIAA0100	17	26948452	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	20349265	26948452	54246758	140	2351											
NUFIP2	57532	hgsc.bcm.edu;bcgsc.ca	37	chr17	27614321	27614321	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggttttcacaacccttggCactattgcgcctagctttcc	8	13	7	13	1	1	0	1	0	0	0	2	0	2	0	3	2	3	3	3	2	4	7	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_020772	exon2	c.G691A	p.A231T	CCTTGGCACTATT	.	35	4	36	0	.	.	T	27614321	C	T	27614321	3	4	17	1	0	0	0	0	1	0	0	0	10797	710	25	3	1408	3	NUFIP2	17	27614321	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	665869	27614321	53580889	141	2352											
C17orf78	284099	hgsc.bcm.edu;bcgsc.ca	37	chr17	35746210	35746210	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctaggagccaggaagctgtgCcaatgccagtggttgtggag	9	8	16	8	0	0	0	0	0	0	0	0	3	0	3	3	4	4	2	3	4	3	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_173625	exon6	c.C663T	p.C221C	GCTGTGCCAATGC	.	31	4	31	0	.	.	T	35746210	C	T	35746210	2	4	17	1	0	0	0	0	0	0	0	1	1893	747	26	3		3	C17orf78	17	35746210	Silent	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	8131889	35746210	45449000	142	2353											
NMT1	4836	hgsc.bcm.edu;ucsc.edu	37	chr17	43182337	43182337	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cagtattacctttacaattgGaaatgccccagcatgggggc	11	10	10	10	0	0	0	0	0	0	0	0	1	0	1	3	3	4	2	3	3	5	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_021079	exon11	c.G1443T	p.W481C	CAATTGGAAATGC	.	36	4	22	0	.	.	T	43182337	G	T	43182337	3	4	17	1	0	0	0	0	1	0	0	0	10550	1183	41	3	1485	3	NMT1	17	43182337	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	7436127	43182337	38012873	143	2354											
HLF	3131	hgsc.bcm.edu	37	chr17	53392723	53392723	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaaatgtttgaccctcGcaaacgcaagttctctgagg	11	9	10	11	2	1	2	0	2	1	0	3	3	1	3	2	2	1	4	2	2	3	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	HLF_ENST00000226067,colon,carcinoma,+1,1	HLF_ENST00000226067	NM_002126	exon3	c.G587T	p.R196L	ACCCTCGCAAACG	.	46	2	29	1	.	+1	T	53392723	G	T	53392723	3	4	17	1	0	0	0	0	1	0	0	0	7255	1087	38	2	597	2	HLF	17	53392723	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	10210386	53392723	27802487	144	2355											
LPO	4025	hgsc.bcm.edu	37	chr17	56343531	56343531	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caggtggaattgatcctctgGtgcggggcctgctggccaag	6	9	16	10	1	1	1	0	1	1	0	2	2	2	2	3	6	2	1	3	6	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006151	exon11	c.G1537T	p.V513L	CCTCTGGTGCGGG	.	40	3	31	0	.	.	T	56343531	G	T	56343531	3	4	17	1	0	0	0	0	1	0	0	0	8967	1261	44	3	1575	3	LPO	17	56343531	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2950808	56343531	24851679	145	2356											
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	57474462	57474462	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tctgcttctgtatttcctagGaacatgcttttgaaagcagc	9	15	8	9	0	2	1	0	1	2	0	3	2	3	2	1	1	5	4	1	1	4	6	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001005404	exon5	c.G271T	p.E91X	TCCTAGGAACATG	.	29	14	33	0	.	.	T	57474462	G	T	57474462	4	4	17	1	0	0	0	0	0	1	0	0	17550	1188	41	3	285	3	YPEL2	17	57474462	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	1130931	57474462	23720748	146	2357											
FDXR	2232	ucsc.edu	37	chr17	72860068	72860068	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tggggatgaccccaagcttgGagtcaaagggcacgcttggg	9	7	16	9	1	1	1	1	1	0	0	1	3	1	3	2	5	1	3	2	5	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	FDXR	NM_001258012	exon10	c.C1253A	p.S418Y	AGCTTGGAGTCAA	.	35	4	20	0	.	68	T	72860068	G	T	72860068	3	4	17	1	0	0	0	0	1	0	0	0	5840	1174	41	3	363	3	FDXR	17	72860068	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	15385606	72860068	8335142	147	2358											
LLGL2	3993	hgsc.bcm.edu	37	chr17	73569305	73569305	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcgctacagctgcatcCgccgggaggacgtcagtggc	7	6	16	12	4	1	0	1	0	0	0	2	2	2	2	2	4	4	3	2	4	1	1	rs372867184		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LLGL2_ENST00000167462,colon,carcinoma,0,2	LLGL2_ENST00000167462	NM_004524	exon20	c.C2671T	p.R891C	TGCATCCGCCGGG	.	37	2	36	0	.	0	T	73569305	C	T	73569305	3	4	17	1	0	0	0	0	1	0	0	0	8875	652	23	1	2780	1	LLGL2	17	73569305	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09	709237	73569305	7625905	148	2359											
ZACN	353174	hgsc.bcm.edu	37	chr17	74077646	74077646	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggctgaagaacacggcGctcaagtccatcatcgctct	10	8	10	13	3	3	3	2	2	1	1	5	3	4	3	1	2	1	3	1	2	3	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ZACN,caecum,carcinoma,0,1	ZACN	NM_180990	exon7	c.G690A	p.A230A	CACGGCGCTCAAG	.	16	2	20	0	.	0	A	74077646	G	A	74077646	2	1	17	1	0	0	0	0	0	0	0	1	17570	1074	38	1		1	ZACN	17	74077646	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	508341	74077646	7117564	149	2360											
BAIAP2	10458	ucsc.edu;bcgsc.ca	37	chr17	79090074	79090074	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaggccgggagcacggggAtgggagcgcccgcaccctgg	8	2	19	12	4	0	1	0	0	0	1	0	4	0	4	3	6	2	2	3	6	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	BAIAP2	NM_017451	exon15	c.A1628G	p.D543G	ACGGGGATGGGAG	.	42	4	34	0	.	74	G	79090074	A	G	79090074	3	3	17	1	0	0	0	0	1	0	0	0	1299	333	12	4	1775	4	BAIAP2	17	79090074	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	5012428	79090074	2105136	150	2361											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	47566596	47566596	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gctcatgaagatagctaaggGcagtcaggtcattttctccc	10	11	10	10	0	4	2	3	1	1	1	5	2	4	2	1	2	1	3	1	2	3	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001080467	exon3	c.C227A	p.A76D	CTAAGGGCAGTCA	.	30	4	57	0	.	.	T	47566596	G	T	47566596	3	4	17	1	0	0	0	0	1	0	0	0	10127	1203	42	3	5471	3	MYO5B	18	47566596	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09		47566596	30510652	151	2362											
STK11	6794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1207097	1207098	+	Frame_Shift_Del	DEL	AG	AG	-																															gggggaaggctcttacggcaAggtgaaggaggtgctggact																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STK11,right_upper_lobe,carcinoma,0,2	STK11	NM_000455	exon1	c.184_185del	p.62_62del	ACGGCAAGGTGAA	.	39	19	50	0	.	0	-	1207098	AG	-	1207097	7	5	17	1	0	1	0	1	0	0	0	0	15343	72	3	0	187	0	STK11	19	1207097	Frame_Shift_Del	DEL	AG	TCGA-W5-AA2X-01A-11D-A417-09		1207097	57921886	152	2363											
DOT1L	84444	bcgsc.ca	37	chr19	2189743	2189743	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttttcagcttcgagagcatGcagaggctctgcgacaagta	10	11	11	9	2	2	2	1	0	1	2	3	4	2	2	0	1	4	5	0	1	2	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	DOT1L	NM_032482	exon4	c.G213T	p.M71I	GAGCATGCAGAGG	.	14	3	26	0	.	205	T	2189743	T	T	2189743	3	4	17	1	0	0	0	0	1	0	0	0	4736	1319	46	3	227	3	DOT1L	19	2189743	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	982646	2189743	56939240	153	2364											
KEAP1	9817	broad.mit.edu;bcgsc.ca	37	chr19	10602675	10602680	+	In_Frame_Del	DEL	CAGGTA	CAGGTA	-																															agctcctcgaagatcttgacCaggtagtccttgcagcggga																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	KEAP1	NM_012289	exon3	c.898_903del	p.300_301del	CTTGACCAGGTAG	.	18	6	35	0	.	182	-	10602680	CAGGTA	-	10602675	7	5	17	1	0	1	0	1	0	0	0	0	8184	581	21	0	987	0	KEAP1	19	10602675	In_Frame_Del	DEL	CAGGTA	TCGA-W5-AA2X-01A-11D-A417-09	8412932	10602675	48526308	154	2365											
MLL4	8085	hgsc.bcm.edu	37	chr19	36213993	36213993	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gggagaatcagagcccacagGttctggagggaccctggccc	9	5	15	12	0	2	2	1	0	1	2	2	5	2	4	3	5	1	1	3	5	1	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014727	exon6	c.G2819T	p.G940V	CCACAGGTTCTGG	.	71	4	50	0	.	.	T	36213993	G	T	36213993	3	4	17	1	0	0	0	0	1	0	0	0	9671	1261	44	3	2841	3	MLL4	19	36213993	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	25611318	36213993	22914990	155	2366											
LILRA1	11024	hgsc.bcm.edu	37	chr19	55106239	55106239	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagacccaggagtaccgtctGtatagagaaaagaaaacagc	17	5	11	8	1	1	3	0	0	1	3	1	6	1	4	2	1	3	2	2	1	7	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LILRA1,NS,carcinoma,0,3	LILRA1	NM_006863	exon4	c.G180A	p.L60L	CCGTCTGTATAGA	.	36	2	41	0	.	0	A	55106239	G	A	55106239	2	1	17	1	0	0	0	0	0	0	0	1	8824	1364	48	3		3	LILRA1	19	55106239	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	18892246	55106239	4022744	156	2367											
PTPRH	5794	hgsc.bcm.edu	37	chr19	55697250	55697250	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggagcagcagttcccGcaccgtccagttctccatca	8	8	10	15	2	2	0	1	0	1	0	5	2	4	2	4	2	2	5	4	2	0	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002842	exon17	c.C2881T	p.R961W	GTTCCCGCACCGT	.	19	4	10	0	.	.	A	55697250	G	A	55697250	3	1	17	1	0	0	0	0	1	0	0	0	12855	1086	38	1	482	1	PTPRH	19	55697250	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	591011	55697250	3431733	157	2368											
UBOX5	22888	hgsc.bcm.edu	37	chr20	3102954	3102954	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	caaggtgaacgcctccttgtCtgggacagatggctcagctg	8	9	13	11	1	2	2	1	1	1	1	3	3	3	3	2	3	2	2	2	3	2	1	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	UBOX5,right_upper_lobe,carcinoma,0,1	UBOX5	NM_014948	exon3	c.G331A	p.D111N	CCTTGTCTGGGAC	.	46	2	29	0	.	0	T	3102954	C	T	3102954	3	4	17	1	0	0	0	0	1	0	0	0	16955	913	32	3	1306	3	UBOX5	20	3102954	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		3102954	59922566	158	2369											
CHGB	1114	hgsc.bcm.edu	37	chr20	5903817	5903817	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggaagaacctgaatatggaGaagaaataaagggttatcca	19	7	11	4	0	0	4	0	1	0	3	1	6	1	5	2	3	1	1	2	3	9	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CHGB,NS,carcinoma,0,1	CHGB	NM_001819	exon4	c.G1027T	p.E343X	TATGGAGAAGAAA	.	34	2	24	0	.	0	T	5903817	G	T	5903817	4	4	17	1	0	0	0	0	0	1	0	0	3361	943	33	3	1041	3	CHGB	20	5903817	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	2800863	5903817	57121703	159	2370											
NCOA3	8202	hgsc.bcm.edu	37	chr20	46279833	46279833	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcagcagcagcagcaGcaacagcagcagcagcagca	15	1	12	13	0	0	0	0	0	0	0	0	0	0	0	0	0	13	12	0	0	1	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	31	2	31	1	.	0	A	46279833	G	A	46279833	2	1	17	1	0	0	0	0	0	0	0	1	10277	962	34	3		3	NCOA3	20	46279833	Silent	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	40376016	46279833	16745687	160	2371											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57415343	57415343	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgcgcggctgcccaacagcGccggagcttccttaacgccc	6	5	12	18	6	0	0	0	0	0	0	1	1	1	1	4	2	5	2	4	2	2	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016592	exon1	c.G182A	p.R61H	AACAGCGCCGGAG	.	49	25	36	0	.	.	A	57415343	G	A	57415343	3	1	17	1	0	0	0	0	1	0	0	0	6552	1087	38	1	184	1	GNAS	20	57415343	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	11135510	57415343	5610177	161	2372											
ADRM1	11047	hgsc.bcm.edu	37	chr20	60879633	60879633	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cggcttttcttctggatgcaGgtatggggcaggccttgggg	4	12	17	8	1	2	0	0	0	2	0	2	1	2	1	1	8	1	4	1	8	1	5	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_175573	exon3	c.G330T	p.Q110H	GATGCAGGTATGG	.	46	2	42	0	.	.	T	60879633	G	T	60879633	3	4	17	1	0	0	0	0	1	0	0	0	344	1014	35	3	336	3	ADRM1	20	60879633	Missense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	3464290	60879633	2145887	162	2373											
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34060664	34060664	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atccccttgacatacggacaCgatgagatcccaccttagac	12	8	7	14	2	0	3	0	2	0	2	2	6	2	4	4	1	1	0	4	1	2	3	rs201796096		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_203446	exon7	c.G920A	p.R307H	CGGACACGATGAG	.	36	24	39	0	0.001	.	T	34060664	C	T	34060664	3	4	17	1	0	0	0	0	1	0	0	0	15509	536	19	1	4056	1	SYNJ1	21	34060664	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		34060664	14069231	163	2374											
EIF4ENIF1	56478	hgsc.bcm.edu	37	chr22	31859005	31859005	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atcatcaaagccagtcagttCgatggtttcagactgacttg	11	12	9	9	1	4	2	4	1	0	1	5	3	4	2	1	1	1	2	1	1	1	3	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	EIF4ENIF1,colon,carcinoma,0,1	EIF4ENIF1	NM_019843	exon6	c.G700A	p.E234K	TCAGTTCGATGGT	.	49	2	30	0	.	0	T	31859005	C	T	31859005	3	4	17	1	0	0	0	0	1	0	0	0	5063	893	31	1	2316	1	EIF4ENIF1	22	31859005	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		31859005	19445561	164	2375											
TRO	7216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chrX	54950954	54950954	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cccatggggccggaggcctgCaccaccgcgagatgtggcca	7	4	15	15	3	0	1	0	0	0	1	0	3	0	2	6	5	1	1	6	5	0	0	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016157	exon4	c.C1307T	p.A436V	GGCCTGCACCACC	.	42	4	27	0	.	.	T	54950954	C	T	54950954	3	4	17	1	0	0	0	0	1	0	0	0	16635	710	25	3	1317	3	TRO	23	54950954	Missense_Mutation	SNP	C	TCGA-W5-AA2X-01A-11D-A417-09		54950954	100319606	165	2376											
PHKA1	5255	broad.mit.edu	37	chrX	71839078	71839078	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atttacctggttctcctgtcGgggatgaggtgaatcaagta	9	13	12	7	1	2	2	1	2	1	0	4	3	2	3	2	4	1	2	2	4	4	4	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PHKA1	NM_002637	exon20	c.C2215T	p.R739X	CCTGTCGGGGATG	.	122	8	82	0	.	129	A	71839078	G	A	71839078	4	1	17	1	0	0	0	0	0	1	0	0	11891	1124	39	1	1508	1	PHKA1	23	71839078	Nonsense_Mutation	SNP	G	TCGA-W5-AA2X-01A-11D-A417-09	16888124	71839078	83431482	166	2377											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	71932695	71932695	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataggccaggcccaaaccccAcacagccaagatgctgtaca	14	4	8	15	0	0	1	0	0	0	1	0	1	0	1	5	2	4	2	5	2	4	2	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001172436	exon2	c.T163C	p.W55R	AACCCCACACAGC	.	27	23	18	0	.	.	G	71932695	A	G	71932695	3	3	17	1	0	0	0	0	1	0	0	0	11891	159	6	4	3632	4	PHKA1	23	71932695	Missense_Mutation	SNP	A	TCGA-W5-AA2X-01A-11D-A417-09	93617	71932695	83337865	167	2378											
MAGEE1	57692	broad.mit.edu	37	chrX	75648348	75648350	+	In_Frame_Del	DEL	CGC	CGC	-																															ctctggtaagccagaattcgCgccgccgccgccgccgcgtt																								novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	MAGEE1	NM_020932	exon1	c.25_27del	p.9_9del	AATTCGCGCCGCC	.	74	7	40	0	.	236	-	75648350	CGC	-	75648348	7	5	17	1	0	1	0	1	0	0	0	0	9235	768	27	0	27	0	MAGEE1	23	75648348	In_Frame_Del	DEL	CGC	TCGA-W5-AA2X-01A-11D-A417-09	3715653	75648348	79622212	168	2379											
NPHP4	261734	hgsc.bcm.edu	37	chr1	5951028	5951028	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcgggcaaagcagcgcCgctcacctggcttcaggaac	9	5	14	13	3	2	0	2	0	0	0	2	1	2	1	2	4	4	5	2	4	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	NPHP4,colon,carcinoma,0,1	NPHP4	NM_015102	exon17	c.G2204T	p.R735L	CAGCGCCGCTCAC	.	36	2	32	0	.	0	A	5951028	C	A	5951028	3	1	18	1	0	0	0	0	1	0	0	0	10628	652	23	2	2132	2	NPHP4	1	5951028	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09		5951028	243299593	1	2380											
DMAP1	55929	hgsc.bcm.edu	37	chr1	44684374	44684374	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtatttgatgctgggcacGaacgacggcggaaggaacag	12	6	15	8	4	0	1	0	1	0	0	0	5	0	3	0	4	3	3	0	4	4	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	DMAP1,NS,carcinoma,0,1	DMAP1	NM_001034024	exon6	c.G667T	p.E223X	GGGCACGAACGAC	.	43	2	35	0	.	0	T	44684374	G	T	44684374	4	4	18	1	0	0	0	0	0	1	0	0	4604	1059	37	2	685	2	DMAP1	1	44684374	Nonsense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	38733346	44684374	204566247	2	2381											
NRD1	4898	bcgsc.ca	37	chr1	52276063	52276063	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gaggaactagctgattcaagGcttcaccaatgacctagtaa	14	9	9	9	0	2	2	2	2	0	0	2	4	2	3	2	2	2	3	2	2	6	5	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	NRD1	NM_002525	exon18	c.C1997A	p.A666D	TTCAAGGCTTCAC	.	89	4	88	1	.	89	T	52276063	T	T	52276063	3	4	18	1	0	0	0	0	1	0	0	0	10693	1203	42	3	1726	3	NRD1	1	52276063	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	7591689	52276063	196974558	3	2382											
CELSR2	1952	hgsc.bcm.edu	37	chr1	109813581	109813581	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctggaccccgagggctacGggaaccctgacttctgctgg	6	7	14	14	2	1	1	0	1	1	0	1	4	1	3	4	4	3	2	4	4	2	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CELSR2,colon,NS,0,1	CELSR2	NM_001408	exon25	c.G7516T	p.G2506W	GGCTACGGGAACC	.	45	2	39	1	.	0	T	109813581	G	T	109813581	3	4	18	1	0	0	0	0	1	0	0	0	3244	1116	39	2	7614	2	CELSR2	1	109813581	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	57537518	109813581	139437040	4	2383											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150445250	150445250	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ccccacctcctcctccccctCctggggaacatagcagcagt	7	7	7	20	0	0	0	0	0	0	0	4	1	4	1	8	2	3	2	8	2	2	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_015203	exon11	c.C3826T	p.P1276S	CCCCCTCCTGGGG	.	79	21	65	0	.	.	T	150445250	C	T	150445250	3	4	18	1	0	0	0	0	1	0	0	0	13669	855	30	3	3868	3	RPRD2	1	150445250	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	40631669	150445250	98805371	5	2384											
IVL	3713	hgsc.bcm.edu;bcgsc.ca	37	chr1	152883026	152883026	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctctctgagcagcaggagggGcagctggagctctctgagca	8	7	15	11	0	2	2	0	2	2	0	4	4	2	4	0	4	5	6	0	4	0	0	rs45544033	bycluster	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_005547	exon2	c.G753A	p.G251G	GGAGGGGCAGCTG	.	39	7	26	0	.	.	A	152883026	G	A	152883026	2	1	18	1	0	0	0	0	0	0	0	1	7973	1190	42	3		3	IVL	1	152883026	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	2437776	152883026	96367595	6	2385											
ARHGEF11	9826	hgsc.bcm.edu;bcgsc.ca	37	chr1	156914912	156914912	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gcggttctctgtttgttttaCcgcttcattcacatacttga	6	18	7	10	2	3	1	2	1	1	0	4	1	3	1	1	1	2	4	1	1	2	8	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_198236	exon30	c.G2890A	p.V964I	GTTTTACCGCTTC	.	66	4	42	0	.	.	T	156914912	C	T	156914912	3	4	18	1	0	0	0	0	1	0	0	0	893	507	18	3	1846	3	ARHGEF11	1	156914912	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	4031886	156914912	92335709	7	2386											
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169670703	169670703	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaagttaaactcacatacctTtttttaatctccttgccagc	11	15	4	11	0	2	0	1	0	1	0	3	1	2	0	3	0	4	1	3	0	5	7	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_000655	exon7	c.A1118G	p.K373R	ATACCTTTTTTTA	.	81	13	68	0	.	.	C	169670703	T	C	169670703	3	2	18	1	0	0	0	0	1	0	0	0	14070	1841	64	4	51	4	SELL	1	169670703	Missense_Mutation	SNP	T	TCGA-W5-AA2Z-01A-11D-A417-09	12755791	169670703	79579918	8	2387											
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169670779	169670779	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	catgactgccactggaatgaAgagggggttataatcaccct	12	9	11	9	0	1	3	1	2	0	1	1	4	1	4	2	3	1	1	2	3	4	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_000655	exon7	c.T1042C	p.F348L	GAATGAAGAGGGG	.	68	9	58	0	.	.	G	169670779	A	G	169670779	3	3	18	1	0	0	0	0	1	0	0	0	14070	72	3	4	127	4	SELL	1	169670779	Missense_Mutation	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	76	169670779	79579842	9	2388											
CACNA1E	777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	181686266	181686266	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gccagtatcaaaagtgcaaaGgtagacggggtctcttattt	12	11	11	7	1	2	1	1	0	1	1	3	1	2	1	1	3	1	3	1	3	6	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001205293	exon11	c.G1353A	p.K451K	TGCAAAGGTAGAC	.	37	5	23	0	.	.	A	181686266	G	A	181686266	2	1	18	1	0	0	0	0	0	0	0	1	2560	991	35	3		3	CACNA1E	1	181686266	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	12015487	181686266	67564355	10	2389											
LAMC1	3915	bcgsc.ca	37	chr1	183093839	183093839	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aacggccctgtgagactttgCcgcctgtgccagtgcagtga	7	9	13	12	2	0	2	0	2	0	1	0	3	0	2	4	1	4	1	4	1	1	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	LAMC1	NM_002293	exon14	c.C2475T	p.C825C	ACTTTGCCGCCTG	.	54	4	39	0	.	176	T	183093839	T	T	183093839	2	4	18	1	0	0	0	0	0	0	0	1	8653	747	26	3		3	LAMC1	1	183093839	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	1407573	183093839	66156782	11	2390											
DSTYK	25778	hgsc.bcm.edu;bcgsc.ca	37	chr1	205132087	205132087	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catagcatccttgtaactgaCgaccctgagtgaaacgtgac	12	9	9	11	2	0	4	0	4	0	0	1	5	1	4	2	0	3	2	2	0	3	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_199462	exon5	c.G1605A	p.S535S	AACTGACGACCCT	.	87	4	78	0	.	.	T	205132087	C	T	205132087	2	4	18	1	0	0	0	0	0	0	0	1	4811	523	19	1		1	DSTYK	1	205132087	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	22038248	205132087	44118534	12	2391											
IFT172	26160	hgsc.bcm.edu;bcgsc.ca	37	chr2	27702379	27702379	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gctaccatcctgcttacctgGctaggtcccacatacgtcaa	9	10	7	15	1	1	0	1	0	0	0	3	0	3	0	4	2	4	3	4	2	5	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_015662	exon10	c.C1002T	p.S334S	TACCTGGCTAGGT	.	60	4	77	0	.	.	A	27702379	G	A	27702379	2	1	18	1	0	0	0	0	0	0	0	1	7601	1194	42	3		3	IFT172	2	27702379	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		27702379	215496994	13	2392											
CCDC150	284992	hgsc.bcm.edu	37	chr2	197521765	197521765	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atctcgaagttatgaatttgCgccagcaactgagagctgta	12	11	10	8	2	1	2	0	2	1	1	2	4	1	2	1	0	4	4	1	0	5	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CCDC150,NS,carcinoma,0,1	CCDC150	NM_001080539	exon4	c.C481T	p.R161C	AATTTGCGCCAGC	.	33	2	25	0	.	0	T	197521765	C	T	197521765	3	4	18	1	0	0	0	0	1	0	0	0	2803	768	27	1	495	1	CCDC150	2	197521765	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	169819386	197521765	45677608	14	2393											
NBEAL1	65065	hgsc.bcm.edu	37	chr2	203995146	203995146	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgctgacatactgtacGcattgctcttaaatcagaag	14	11	8	8	1	2	2	1	1	1	1	2	3	2	2	0	0	4	4	0	0	6	4	rs376644554	alternate_allele	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	NBEAL1_ENST00000449802,colon,carcinoma,0,1	NBEAL1_ENST00000449802	NM_001114132	exon24	c.G3424T	p.A1142S	CTGTACGCATTGC	.	42	2	24	0	.	0	T	203995146	G	T	203995146	3	4	18	1	0	0	0	0	1	0	0	0	10236	1087	38	2	3514	2	NBEAL1	2	203995146	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	6473381	203995146	39204227	15	2394											
SLC23A3	151295	hgsc.bcm.edu	37	chr2	220034386	220034386	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagacacagagcagagaagcCatgaccaagacatgctgcag	16	3	12	10	0	0	5	0	1	0	4	0	7	0	5	2	0	4	3	2	0	2	0	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	SLC23A3_ENST00000455516,NS,carcinoma,0,2	SLC23A3_ENST00000455516	NM_001144890	exon2	c.G177T	p.M59I	AGAAGCCATGACC	.	60	2	54	0	.	0	A	220034386	C	A	220034386	3	1	18	1	0	0	0	0	1	0	0	0	14519	594	21	3	1723	3	SLC23A3	2	220034386	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	16039240	220034386	23164987	16	2395											
IQCA1	79781	hgsc.bcm.edu	37	chr2	237233410	237233410	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cacgttttttacccagaggaGttttggcataccagttctga	9	14	9	9	1	1	2	0	1	1	1	1	3	1	3	2	2	2	4	2	2	2	7	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001270585	exon19	c.C2414A	p.T805N	AGAGGAGTTTTGG	.	76	4	53	0	.	.	T	237233410	G	T	237233410	3	4	18	1	0	0	0	0	1	0	0	0	7846	1029	36	3	82	3	IQCA1	2	237233410	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	17199024	237233410	5965963	17	2396											
GPC1	2817	hgsc.bcm.edu;bcgsc.ca	37	chr2	241401740	241401740	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagctgcgcctgtactaccGcggtgccaacctgcacctgg	7	7	12	15	3	0	1	0	0	0	1	0	1	0	1	5	2	7	3	5	2	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_002081	exon3	c.G458A	p.R153H	ACTACCGCGGTGC	.	63	4	69	0	.	.	A	241401740	G	A	241401740	3	1	18	1	0	0	0	0	1	0	0	0	6637	1087	38	1	468	1	GPC1	2	241401740	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	4168330	241401740	1797633	18	2397											
CNTN4	152330	hgsc.bcm.edu	37	chr3	3072560	3072560	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggattcagctggtgatttgAtgatccgaaacatccaactg	12	11	10	8	1	1	3	1	3	0	0	3	5	3	4	2	2	3	1	2	2	2	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CNTN4_ENST00000418658,NS,lymphoid_neoplasm,0,2	CNTN4_ENST00000418658	NM_175607	exon16	c.A1684G	p.M562V	GATTTGATGATCC	.	47	2	55	0	.	0	G	3072560	A	G	3072560	3	3	18	1	0	0	0	0	1	0	0	0	3666	333	12	4	1734	4	CNTN4	3	3072560	Missense_Mutation	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09		3072560	194949870	19	2398											
SMARCC1	6599	hgsc.bcm.edu	37	chr3	47716999	47716999	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttggagtaaatgtcagtaCggagaccaaagttctgcaaa	14	10	10	7	1	3	1	1	0	2	1	3	3	3	2	1	2	2	4	1	2	5	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	SMARCC1,NS,carcinoma,0,1	SMARCC1	NM_003074	exon18	c.G1805A	p.R602H	TCAGTACGGAGAC	.	55	3	52	0	.	0	T	47716999	C	T	47716999	3	4	18	1	0	0	0	0	1	0	0	0	14829	536	19	1	1556	1	SMARCC1	3	47716999	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	44644439	47716999	150305431	20	2399											
MST1	4485	ucsc.edu	37	chr3	49725034	49725034	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccagaacgccgcagcctcgTgtggggcgagtgttgagtcc	6	7	15	13	4	0	2	0	1	0	1	2	3	1	2	4	2	2	2	4	2	1	1	rs142964215		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	MST1	NM_020998	exon3	c.A310T	p.T104S	GCCTCGTGTGGGG	.	56	12	65	5	.	84	A	49725034	T	A	49725034	3	1	18	1	0	0	0	0	1	0	0	0	9938	1696	59	5	1931	5	MST1	3	49725034	Missense_Mutation	SNP	T	TCGA-W5-AA2Z-01A-11D-A417-09	2008035	49725034	148297396	21	2400											
RBM5	10181	bcgsc.ca	37	chr3	50143035	50143035	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tggtggattccatcatgacaGcactgtctccttacgcgtct	7	13	9	12	2	3	1	1	1	2	0	5	2	4	2	2	2	2	1	2	2	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	RBM5	NM_005778	exon10	c.G748T	p.A250S	ATGACAGCACTGT	.	43	4	58	1	.	76	T	50143035	T	T	50143035	3	4	18	1	0	0	0	0	1	0	0	0	13195	971	34	3	782	3	RBM5	3	50143035	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	418001	50143035	147879395	22	2401											
CCDC37	348807	hgsc.bcm.edu	37	chr3	126142435	126142435	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tccagaacagccaggagacgGagaagaccctggaggagctg	13	3	15	10	1	0	4	0	0	0	4	1	8	1	6	3	4	3	1	3	4	2	0	rs200815085	bycluster	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CCDC37,rectum,carcinoma,0,1	CCDC37	NM_182628	exon13	c.G1234A	p.E412K	GAGACGGAGAAGA	.	43	2	41	0	.	0	A	126142435	G	A	126142435	3	1	18	1	0	0	0	0	1	0	0	0	2828	1175	41	3	1280	3	CCDC37	3	126142435	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	75999400	126142435	71879995	23	2402											
CHST2	9435	hgsc.bcm.edu	37	chr3	142840192	142840192	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acgtggcgctctggctcgtcGttcttcggcgagctattcaa	5	12	12	12	6	3	0	1	0	2	0	6	1	3	0	0	3	1	4	0	3	2	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CHST2,colon,adenoma,0,1	CHST2	NM_004267	exon2	c.G534A	p.S178S	CTCGTCGTTCTTC	.	37	3	47	0	.	0	A	142840192	G	A	142840192	2	1	18	1	0	0	0	0	0	0	0	1	3426	1132	40	1		1	CHST2	3	142840192	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	16697757	142840192	55182238	24	2403											
USP13	8975	hgsc.bcm.edu	37	chr3	179458119	179458119	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcctctaacaggcagcaaGatgcccaggaattcttcttg	10	11	8	12	0	4	1	0	0	4	1	5	2	4	2	2	2	3	2	2	2	3	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	USP13,bladder,carcinoma,0,1	USP13	NM_003940	exon11	c.G1339T	p.D447Y	CAGCAAGATGCCC	.	30	2	29	0	.	0	T	179458119	G	T	179458119	3	4	18	1	0	0	0	0	1	0	0	0	17104	942	33	3	1381	3	USP13	3	179458119	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	36617927	179458119	18564311	25	2404											
N4BP2	55728	hgsc.bcm.edu;bcgsc.ca	37	chr4	40133497	40133497	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gctctttaagatatttccagCcattaaccaaaattttctgg	12	15	5	9	0	2	1	0	0	2	1	3	1	3	1	3	1	2	1	3	1	5	7	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_018177	exon13	c.C4604T	p.A1535V	TTCCAGCCATTAA	.	65	4	56	0	.	.	T	40133497	C	T	40133497	3	4	18	1	0	0	0	0	1	0	0	0	10158	739	26	3	4646	3	N4BP2	4	40133497	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09		40133497	151020779	26	2405											
MARCH1	55016	hgsc.bcm.edu	37	chr4	164449941	164449941	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggggccaccctctgcagatgGcagtgaatttgcacctgttt	7	11	12	11	0	1	2	0	1	1	1	1	2	1	2	3	3	2	4	3	3	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	MARCH1_ENST00000503008,NS,carcinoma,0,2	MARCH1_ENST00000503008	NM_001166373	exon8	c.C829A	p.P277T	CAGATGGCAGTGA	.	65	3	48	0	.	0	T	164449941	G	T	164449941	3	4	18	1	0	0	0	0	1	0	0	0	9348	1203	42	3	44	3	MARCH1	4	164449941	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	124316444	164449941	26704335	27	2406											
CARD6	84674	broad.mit.edu	37	chr5	40841684	40841684	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gttaattttggtacagaaaaAgggagaggcgacctgtcagc	13	9	13	6	1	1	2	1	0	0	2	1	4	1	2	1	3	2	2	1	3	4	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	CARD6	NM_032587	exon1	c.A200G	p.K67R	AGAAAAAGGGAGA	.	85	5	76	1	.	141	G	40841684	A	G	40841684	3	3	18	1	0	0	0	0	1	0	0	0	2668	72	3	4	202	4	CARD6	5	40841684	Missense_Mutation	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09		40841684	140073576	28	2407											
TTC37	9652	hgsc.bcm.edu	37	chr5	94852864	94852864	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aattaccttcctccaaggtgGaggagctcatttttctttaa	10	15	7	9	0	2	0	1	0	1	0	4	2	4	2	3	3	2	1	3	3	4	6	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	TTC37,NS,carcinoma,0,1	TTC37	NM_014639	exon21	c.C2277A	p.L759L	AAGGTGGAGGAGC	.	42	2	36	0	.	0	T	94852864	G	T	94852864	2	4	18	1	0	0	0	0	0	0	0	1	16767	1161	41	3		3	TTC37	5	94852864	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	54011180	94852864	86062396	29	2408											
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	101582976	101582976	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttaggatagacacagttatAggagtaccggccataaaggt	14	9	11	7	1	0	1	0	0	0	1	0	3	0	3	2	4	1	2	2	4	7	6	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_180991	exon10	c.T1791C	p.P597P	AGTTATAGGAGTA	.	94	7	52	0	.	.	G	101582976	A	G	101582976	2	3	18	1	0	0	0	0	0	0	0	1	14785	407	15	4		4	SLCO4C1	5	101582976	Silent	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	6730112	101582976	79332284	30	2409											
C5orf30	90355	hgsc.bcm.edu	37	chr5	102611819	102611819	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atttggttggcttcacgactGgcgaggaactcctgaagtta	9	12	12	8	2	1	1	1	1	0	0	2	4	2	2	1	4	1	3	1	4	3	4	rs377580691	alternate_allele	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	C5orf30,NS,carcinoma,0,1	C5orf30	NM_033211	exon3	c.G199T	p.G67C	ACGACTGGCGAGG	.	47	2	37	0	.	0	T	102611819	G	T	102611819	3	4	18	1	0	0	0	0	1	0	0	0	2305	1348	47	3	201	3	C5orf30	5	102611819	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	1028843	102611819	78303441	31	2410											
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	132232701	132232701	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctcccacgcccactttCtgatcccttttggatggttt	4	15	7	15	1	1	1	0	1	1	0	3	2	3	2	4	2	1	1	4	2	0	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_014423	exon11	c.G1621T	p.E541X	CACTTTCTGATCC	.	31	4	28	0	.	.	A	132232701	C	A	132232701	4	1	18	1	0	0	0	0	0	1	0	0	358	922	32	3	1914	3	AFF4	5	132232701	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	29620882	132232701	48682559	32	2411											
BTN3A1	0	broad.mit.edu	37	chr6	26408115	26408115	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gagaggcagctctggggaggGtgtatcctgtaccatcagaa	10	8	15	8	0	2	2	1	0	1	2	3	4	3	3	2	4	2	4	2	4	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	BTN3A1	NM_007048	exon4	c.G650A	p.G217D	GGGAGGGTGTATC	.	44	3	50	0	.	80	A	26408115	G	A	26408115	3	1	18	1	0	0	0	0	1	0	0	0	1565	1261	44	3	660	3	BTN3A1	6	26408115	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		26408115	144706952	33	2412											
ZNF391	346157	hgsc.bcm.edu	37	chr6	27368676	27368676	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgtggaaaagcttttagccGgagcacacatcttagtctac	12	11	9	9	1	2	0	0	0	2	0	2	2	2	2	1	2	4	2	1	2	5	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	ZNF391_ENST00000244576,colon,carcinoma,0,2	ZNF391_ENST00000244576	NM_001076781	exon3	c.G527T	p.R176L	TTAGCCGGAGCAC	.	31	3	43	0	.	0	T	27368676	G	T	27368676	3	4	18	1	0	0	0	0	1	0	0	0	17936	1116	39	2	529	2	ZNF391	6	27368676	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	960561	27368676	143746391	34	2413											
FNDC1	84624	bcgsc.ca	37	chr6	159646709	159646709	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtatttcacagggtgaaagaGatggcaaatggagtacgtca	14	9	13	5	1	2	2	2	1	0	1	2	4	2	3	0	3	1	3	0	3	4	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	FNDC1	NM_032532	exon8	c.G1027T	p.D343Y	GAAAGAGATGGCA	.	19	3	29	0	.	250	T	159646709	T	T	159646709	3	4	18	1	0	0	0	0	1	0	0	0	6001	942	33	3	1057	3	FNDC1	6	159646709	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	132278033	159646709	11468358	35	2414											
SDK1	221935	hgsc.bcm.edu	37	chr7	4218209	4218209	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgcccgtggaggtctttgtcGgcgaggctggtaagctccgt	4	10	16	11	5	1	0	0	0	1	0	3	2	2	1	2	5	1	3	2	5	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	SDK1,spleen,lymphoid_neoplasm,0,1	SDK1	NM_152744	exon35	c.G5089T	p.G1697C	TTTGTCGGCGAGG	.	45	2	32	0	.	0	T	4218209	G	T	4218209	3	4	18	1	0	0	0	0	1	0	0	0	14022	1116	39	2	5227	2	SDK1	7	4218209	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		4218209	154920454	36	2415											
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	4722453	4722453	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agaacggcgtcttcgtggacGgggccttccagagacgcggc	7	6	16	12	6	1	2	0	0	1	2	3	4	2	3	2	5	1	0	2	5	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001037165	exon1	c.G514T	p.G172W	GTGGACGGGGCCT	.	23	11	25	0	.	.	T	4722453	G	T	4722453	3	4	18	1	0	0	0	0	1	0	0	0	6048	1116	39	2	516	2	FOXK1	7	4722453	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	504244	4722453	154416210	37	2416											
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	93055882	93055882	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaattgggcccattggCgcttcacggtggtttggacc	5	14	13	9	2	1	1	1	1	0	0	1	2	1	2	2	5	0	2	2	5	1	6	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CALCR_ENST00000359558,NS,carcinoma,-1,2	CALCR_ENST00000359558	NM_001164737	exon16	c.G1313A	p.R438H	CATTGGCGCTTCA	.	21	8	23	0	.	-1	T	93055882	C	T	93055882	3	4	18	1	0	0	0	0	1	0	0	0	2597	768	27	1	217	1	CALCR	7	93055882	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	88333429	93055882	66082781	38	2417											
MUC17	140453	ucsc.edu	37	chr7	100681474	100681474	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttctactgaagccacttcAtctcctacaactgctgaagg	11	11	6	13	0	3	2	1	2	2	0	4	2	3	2	2	1	5	1	2	1	5	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	MUC17	NM_001040105	exon3	c.A6777G	p.S2259S	CACTTCATCTCCT	.	72	14	58	1	.	804	G	100681474	A	G	100681474	2	3	18	1	0	0	0	0	0	0	0	1	10022	204	8	4		4	MUC17	7	100681474	Silent	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	7625592	100681474	58457189	39	2418											
MUC17	140453	ucsc.edu	37	chr7	100681510	100681510	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaaggtaccagcataccaacTtcaactcttagtgaaggaac	15	8	8	10	0	2	1	1	1	1	0	2	3	2	2	2	2	6	2	2	2	8	4	rs116767656		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	MUC17	NM_001040105	exon3	c.T6813C	p.T2271T	ACCAACTTCAACT	.	72	19	56	2	.	804	C	100681510	T	C	100681510	2	2	18	1	0	0	0	0	0	0	0	1	10022	1596	56	4		4	MUC17	7	100681510	Silent	SNP	T	TCGA-W5-AA2Z-01A-11D-A417-09	36	100681510	58457153	40	2419											
AASS	10157	hgsc.bcm.edu	37	chr7	121755176	121755176	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caccagcaggtgagaacttgCccggagccaggagactctga	11	5	13	12	1	1	3	0	2	1	2	1	6	1	4	3	3	4	1	3	3	1	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	AASS,NS,adenocarcinoma,0,1	AASS	NM_005763	exon9	c.G995A	p.G332D	AACTTGCCCGGAG	.	65	3	89	0	.	0	T	121755176	C	T	121755176	3	4	18	1	0	0	0	0	1	0	0	0	24	739	26	3	1849	3	AASS	7	121755176	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	21073666	121755176	37383487	41	2420											
FLNC	2318	hgsc.bcm.edu;bcgsc.ca	37	chr7	128496613	128496613	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagccagcgtcctttgccgtGcagctgaacggtgcccgggg	5	7	15	14	4	0	1	0	1	0	0	1	1	1	1	4	3	7	2	4	3	1	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001458	exon44	c.G7293T	p.V2431V	TGCCGTGCAGCTG	.	80	4	57	0	.	.	T	128496613	G	T	128496613	2	4	18	1	0	0	0	0	0	0	0	1	5968	1306	46	3		3	FLNC	7	128496613	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	6741437	128496613	30642050	42	2421											
SLC37A3	84255	hgsc.bcm.edu	37	chr7	140043303	140043303	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctttggatgagctcctggCgacccaagtccgcagaaata	10	9	10	12	2	0	2	0	1	0	1	3	4	3	3	4	2	1	2	4	2	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	SLC37A3,rectum,carcinoma,0,1	SLC37A3	NM_207113	exon13	c.G1235A	p.R412H	TCCTGGCGACCCA	.	53	3	40	0	.	0	T	140043303	C	T	140043303	3	4	18	1	0	0	0	0	1	0	0	0	14654	768	27	1	410	1	SLC37A3	7	140043303	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	11546690	140043303	19095360	43	2422											
PDIA4	9601	hgsc.bcm.edu	37	chr7	148701059	148701059	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atagcggtcgctggggacgtCgttggcagtggcgtccatct	5	10	16	10	5	1	0	0	0	1	0	4	1	2	1	1	5	1	3	1	5	1	2	rs374110175		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	PDIA4,NS,carcinoma,0,1	PDIA4	NM_004911	exon10	c.G1765A	p.D589N	GGACGTCGTTGGC	.	36	2	42	0	.	0	T	148701059	C	T	148701059	3	4	18	1	0	0	0	0	1	0	0	0	11717	884	31	1	176	1	PDIA4	7	148701059	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	8657756	148701059	10437604	44	2423											
MLL3	58508	broad.mit.edu	37	chr7	151945305	151945305	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgtaggagtcatttcagaGtccatcaatccagtagaaag	14	11	9	7	0	3	2	3	0	0	2	5	3	5	3	2	1	0	2	2	1	4	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	MLL3	NM_170606	exon14	c.C2214G	p.D738E	TTCAGAGTCCATC	.	51	6	62	1	.	1564	C	151945305	G	C	151945305	3	2	18	1	0	0	0	0	1	0	0	0	9670	1020	36	5	12705	5	MLL3	7	151945305	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	3244246	151945305	7193358	45	2424											
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48710796	48710796	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caagtagaataaagacaccaAcctcttttgtcatgaggctc	14	10	7	10	0	2	3	1	1	1	2	3	3	2	3	2	1	1	2	2	1	6	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001081640	exon74	c.10457+2T>C	.	ACACCAACCTCTT	.	76	9	65	0	.	.	G	48710796	A	G	48710796	5	3	18	1	0	0	0	0	0	0	1	0	12573	57	2	4	1982	4	PRKDC	8	48710796	Splice_Site	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09		48710796	97653226	46	2425											
ZNF7	7553	hgsc.bcm.edu;bcgsc.ca	37	chr8	146067377	146067377	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctcaaaacttattcaGcatcaaagaatccacactgg	15	9	6	11	0	3	2	3	1	0	1	4	2	4	2	1	1	3	2	1	1	5	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_003416	exon5	c.G885A	p.Q295Q	TATTCAGCATCAA	.	44	4	31	0	.	.	A	146067377	G	A	146067377	2	1	18	1	0	0	0	0	0	0	0	1	18158	962	34	3		3	ZNF7	8	146067377	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	97356581	146067377	296645	47	2426											
PTGS1	5742	hgsc.bcm.edu	37	chr9	125133501	125133501	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcttgctgttcctgctccTgctcccgccgctccccgtcc	0	13	8	20	3	1	0	0	0	1	0	6	0	6	0	7	0	3	6	7	0	0	3	rs200490358		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.,1	.	NM_001271164	exon2	c.T44C	p.L15P	TGCTCCTGCTCCC	.	26	5	20	2	.	84	C	125133501	T	C	125133501	3	2	18	1	0	0	0	0	1	0	0	0	12805	1580	55	4	50	4	PTGS1	9	125133501	Missense_Mutation	SNP	T	TCGA-W5-AA2Z-01A-11D-A417-09		125133501	16079930	48	2427											
PSAP	5660	hgsc.bcm.edu;bcgsc.ca	37	chr10	73588681	73588681	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgagggtagaggaggaGagggatgttggccatgaagg	10	7	20	4	0	0	4	0	2	0	2	1	7	1	6	2	6	0	2	2	6	2	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001042466	exon5	c.C529A	p.L177I	GGAGGAGAGGGAT	.	55	4	53	0	.	.	T	73588681	G	T	73588681	3	4	18	1	0	0	0	0	1	0	0	0	12692	942	33	3	1101	3	PSAP	10	73588681	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		73588681	61946066	49	2428											
SYCE1	93426	hgsc.bcm.edu	37	chr10	135371375	135371375	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tggaagctcttacctgtgtgCctcactttccttttcctggc	4	16	8	13	0	2	0	1	0	1	0	4	1	4	1	4	2	3	1	4	2	2	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	SYCE1_ENST00000343131,NS,malignant_melanoma,0,2	SYCE1_ENST00000343131	NM_001143763	exon6	c.G367A	p.A123T	TGTGTGCCTCACT	.	43	2	48	0	.	0	T	135371375	C	T	135371375	3	4	18	1	0	0	0	0	1	0	0	0	15484	739	26	3	763	3	SYCE1	10	135371375	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	61782694	135371375	163372	50	2429											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1247459	1247459	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccgacgtcctcgcccacccGgcgcgtgagctttgttccac	4	8	10	19	6	0	1	0	1	0	0	3	2	2	1	5	1	1	2	5	1	0	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_002458	exon3	c.G152A	p.R51Q	CCACCCGGCGCGT	.	104	38	85	0	.	.	A	1247459	G	A	1247459	3	1	18	1	0	0	0	0	1	0	0	0	10027	1116	39	1	162	1	MUC5B	11	1247459	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		1247459	133759057	51	2430											
SAAL1	113174	hgsc.bcm.edu	37	chr11	18127573	18127573	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgacccggcggcggcggcgAggggttgcggtccatgactt	4	6	19	12	7	0	1	0	1	0	0	1	3	1	1	2	7	1	1	2	7	0	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_138421	exon1	c.T16C	p.S6P	GCGGCGAGGGGTT	.	97	6	76	0	.	.	G	18127573	A	G	18127573	3	3	18	1	0	0	0	0	1	0	0	0	13853	304	11	4	1456	4	SAAL1	11	18127573	Missense_Mutation	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	16880114	18127573	116878943	52	2431											
ACP2	53	hgsc.bcm.edu	37	chr11	47264423	47264423	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccttgtcactctcgttcCgaaagtacatctccactgag	8	11	9	13	2	3	1	1	1	2	0	6	2	4	1	3	1	1	2	3	1	2	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	ACP2,colon,carcinoma,0,1	ACP2	NM_001610	exon10	c.G989T	p.R330L	TCGTTCCGAAAGT	.	29	2	29	0	.	0	A	47264423	C	A	47264423	3	1	18	1	0	0	0	0	1	0	0	0	163	652	23	2	290	2	ACP2	11	47264423	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	29136850	47264423	87742093	53	2432											
GLYATL1	92292	hgsc.bcm.edu	37	chr11	58723373	58723373	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgcgtcagaagaatattcCattttacatctctgtgttgg	9	16	8	8	1	3	2	1	0	2	2	5	2	4	2	1	1	2	1	1	1	4	5	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	GLYATL1_ENST00000317391,NS,carcinoma,0,2	GLYATL1_ENST00000317391	NM_080661	exon7	c.C875A	p.P292Q	ATATTCCATTTTA	.	20	2	29	0	.	0	A	58723373	C	A	58723373	3	1	18	1	0	0	0	0	1	0	0	0	6522	594	21	3	901	3	GLYATL1	11	58723373	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	11458950	58723373	76283143	54	2433											
FTH1	2495	hgsc.bcm.edu	37	chr11	61734852	61734852	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gttgatggcggcctctgagtCctggtggtagttctggcgca	4	12	16	9	2	2	2	0	2	2	0	3	2	3	2	2	5	0	4	2	5	1	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	FTH1,NS,malignant_melanoma,0,1	FTH1	NM_002032	exon1	c.G46T	p.D16Y	CTGAGTCCTGGTG	.	29	3	38	0	.	0	A	61734852	C	A	61734852	3	1	18	1	0	0	0	0	1	0	0	0	6117	855	30	3	521	3	FTH1	11	61734852	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	3011479	61734852	73271664	55	2434											
TIGD3	220359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65123582	65123582	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgggacgtgacggggcccatGctgctccacaaagccaagga	10	5	14	12	2	0	1	0	1	0	0	1	3	1	3	3	4	3	2	3	4	2	0	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_145719	exon2	c.G303A	p.M101I	GCCCATGCTGCTC	.	34	13	38	0	.	.	A	65123582	G	A	65123582	3	1	18	1	0	0	0	0	1	0	0	0	15957	1319	46	3	305	3	TIGD3	11	65123582	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	3388730	65123582	69882934	56	2435											
SSH3	54961	hgsc.bcm.edu;bcgsc.ca	37	chr11	67074544	67074544	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gcaccctgggcctggtcttgCccctctggagtgacacccag	5	8	12	16	0	2	1	0	1	2	0	2	2	2	2	5	3	1	1	5	3	0	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_017857	exon5	c.C496T	p.P166S	GTCTTGCCCCTCT	.	46	4	39	0	.	.	T	67074544	C	T	67074544	3	4	18	1	0	0	0	0	1	0	0	0	15242	739	26	3	514	3	SSH3	11	67074544	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	1950962	67074544	67931972	57	2436											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76883884	76883884	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gcacgctgggtgcctgccagCccttctttgtgcgatgcatc	4	11	12	14	2	1	0	0	0	1	0	2	1	1	0	3	1	5	3	3	1	0	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001127179	exon16	c.C1888A	p.P630T	TGCCAGCCCTTCT	.	39	17	53	0	.	.	A	76883884	C	A	76883884	3	1	18	1	0	0	0	0	1	0	0	0	10130	739	26	3	1946	3	MYO7A	11	76883884	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	9809340	76883884	58122632	58	2437											
FAT3	120114	hgsc.bcm.edu	37	chr11	92534618	92534618	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatgacaacaagccagtCtttgaaacttcaagctatga	15	11	7	8	0	2	4	1	4	1	0	2	4	2	4	1	0	4	1	1	0	6	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	FAT3_ENST00000409404,NS,carcinoma,0,2	FAT3_ENST00000409404	NM_001008781	exon9	c.C8439A	p.V2813V	GCCAGTCTTTGAA	.	49	2	57	0	.	0	A	92534618	C	A	92534618	2	1	18	1	0	0	0	0	0	0	0	1	5724	900	32	3		3	FAT3	11	92534618	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	15650734	92534618	42471898	59	2438											
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	123513240	123513240	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caaactcccgggacacattgCaggtgtagaggccagagtcg	11	6	13	11	2	0	2	0	0	0	2	2	3	1	3	2	3	2	2	2	3	2	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_018400	exon3	c.G359C	p.C120S	ACATTGCAGGTGT	.	31	12	19	0	.	.	G	123513240	C	G	123513240	3	3	18	1	0	0	0	0	1	0	0	0	13973	710	25	5	300	5	SCN3B	11	123513240	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	30978622	123513240	11493276	60	2439											
DYRK4	8798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4700465	4700465	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggtgactctgacagcggcagGtatgcctttggggcagtagc	7	9	16	9	1	1	2	0	2	1	0	1	2	1	2	1	5	3	4	1	5	2	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_003845	exon3	c.118+1G>A	.	CGGCAGGTATGCC	.	69	23	51	0	.	.	A	4700465	G	A	4700465	5	1	18	1	0	0	0	0	0	0	1	0	4884	1275	44	3	121	3	DYRK4	12	4700465	Splice_Site	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		4700465	129151430	61	2440											
BICD1	636	hgsc.bcm.edu	37	chr12	32480599	32480599	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggactcaggggaggaggccCatgactatgaggtggacatc	10	6	17	8	0	1	2	1	2	0	0	2	6	1	6	1	7	0	0	1	7	1	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001714	exon5	c.C1210T	p.H404Y	GAGGCCCATGACT	.	43	4	18	0	.	.	T	32480599	C	T	32480599	3	4	18	1	0	0	0	0	1	0	0	0	1427	594	21	3	1228	3	BICD1	12	32480599	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	27780134	32480599	101371296	62	2441											
DTX1	1840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	113531422	113531422	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	caagcccatcctgcacccgcCgcccgtgagcaagagcgacg	9	3	11	18	5	0	2	0	1	0	1	1	3	1	2	5	0	4	2	5	0	2	0	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_004416	exon4	c.C1082T	p.P361L	ACCCGCCGCCCGT	.	64	13	39	0	.	.	T	113531422	C	T	113531422	3	4	18	1	0	0	0	0	1	0	0	0	4819	652	23	1	1096	1	DTX1	12	113531422	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	81050823	113531422	20320473	63	2442											
COL4A1	1282	ucsc.edu;bcgsc.ca	37	chr13	110850904	110850904	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcctggcagagatgtaccagGaaatcctcggtcaccttttt	9	12	9	11	1	1	1	1	0	0	1	4	3	3	2	4	3	1	2	4	3	2	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	COL4A1	NM_001845	exon21	c.C1195A	p.P399T	TACCAGGAAATCC	.	29	4	37	0	.	372	T	110850904	G	T	110850904	3	4	18	1	0	0	0	0	1	0	0	0	3712	1174	41	3	3942	3	COL4A1	13	110850904	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		110850904	4318974	64	2443											
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggtgcagcgacaaggagcTgccgccgccgccgctctcac	6	4	14	17	6	1	0	1	0	1	0	2	2	1	1	4	2	4	3	4	2	1	0	rs200797826	bycluster	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	15	4	9	0	.	202	C	53619480	T	C	53619480	3	2	18	1	0	0	0	0	1	0	0	0	4349	1580	55	4	2442	4	DDHD1	14	53619480	Missense_Mutation	SNP	T	TCGA-W5-AA2Z-01A-11D-A417-09		53619480	53730060	65	2444											
DLGAP5	9787	hgsc.bcm.edu	37	chr14	55636119	55636119	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaatattgaaccacatacctGaaaactaaccatatcccaaa	20	8	2	11	0	0	2	0	2	0	0	1	2	1	2	4	0	4	0	4	0	9	5	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	DLGAP5,NS,carcinoma,0,1	DLGAP5	NM_014750	exon12	c.C1546A	p.Q516K	ATACCTGAAAACT	.	32	2	36	0	.	0	T	55636119	G	T	55636119	3	4	18	1	0	0	0	0	1	0	0	0	4591	1299	45	3	1121	3	DLGAP5	14	55636119	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	2016639	55636119	51713421	66	2445											
RYR3	6263	bcgsc.ca	37	chr15	33765642	33765642	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaagtggtactccagtGcatcgccaccattcataagg	11	9	11	10	1	1	1	1	1	0	0	3	2	2	2	3	3	2	2	3	3	3	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	RYR3	NM_001243996	exon2	c.G74A	p.C25Y	TCCAGTGCATCGC	.	20	3	36	0	.	760	A	33765642	A	A	33765642	3	1	18	1	0	0	0	0	1	0	0	0	13822	1319	46	3	80	3	RYR3	15	33765642	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		33765642	68765750	67	2446											
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	chr15	63967058	63967058	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttgacgtcatcagatgttagGcctgttcgcatatctaaagc	10	13	9	9	2	3	2	2	1	1	1	4	2	3	2	1	1	1	3	1	1	4	5	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_003922	exon38	c.C7329A	p.G2443G	TGTTAGGCCTGTT	.	65	4	63	0	.	.	T	63967058	G	T	63967058	2	4	18	1	0	0	0	0	0	0	0	1	7098	1190	42	3		3	HERC1	15	63967058	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	30201416	63967058	38564334	68	2447											
GOLGA6B	55889	broad.mit.edu	37	chr15	72954652	72954652	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tggtggaacagctacaagatGaggccaaacacctgaggcag	14	5	13	9	0	0	3	0	2	0	1	0	4	0	4	2	4	4	2	2	4	4	1	rs201023176		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	GOLGA6B	NM_018652	exon11	c.G907A	p.E303K	CAAGATGAGGCCA	.	59	5	51	1	G|0.998;A|0.002	30	A	72954652	G	A	72954652	3	1	18	1	0	0	0	0	1	0	0	0	6600	1291	45	3	949	3	GOLGA6B	15	72954652	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	8987594	72954652	29576740	69	2448											
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79090371	79090371	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgacgcttgtacaccacatGgggctgggcgtggccaggcc	6	7	15	13	2	0	1	0	1	0	0	0	1	0	1	3	5	1	3	3	5	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	ADAMTS7,NS,malignant_melanoma,0,1	ADAMTS7	NM_014272	exon3	c.C541A	p.H181N	CCACATGGGGCTG	.	51	3	33	0	.	0	T	79090371	G	T	79090371	3	4	18	1	0	0	0	0	1	0	0	0	270	1348	47	3	4607	3	ADAMTS7	15	79090371	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	6135719	79090371	23441021	70	2449											
FANCI	55215	hgsc.bcm.edu	37	chr15	89856160	89856160	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gagtaagagcctgaactataCgggagagaaaaaggagaaac	19	4	13	5	1	0	4	0	1	0	3	0	8	0	5	1	2	4	1	1	2	7	3	rs367665900		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001113378	exon35	c.C3677T	p.T1226M	ACTATACGGGAGA	.	84	4	95	0	.	.	T	89856160	C	T	89856160	3	4	18	1	0	0	0	0	1	0	0	0	5702	536	19	1	3811	1	FANCI	15	89856160	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	10765789	89856160	12675232	71	2450											
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	2052396	2052396	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acacagaaagtgcttctcccGgaagtgctcacgcaggtagg	11	7	12	11	2	2	1	1	0	1	1	3	2	2	2	1	3	2	4	1	3	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_178167	exon7	c.C706T	p.R236W	TCTCCCGGAAGTG	.	30	12	17	0	.	.	A	2052396	G	A	2052396	3	1	18	1	0	0	0	0	1	0	0	0	18085	1115	39	1	2040	1	ZNF598	16	2052396	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		2052396	88302357	72	2451											
C16orf59	80178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2510831	2510831	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	tcacagcatgcacacccagtCcacaagacctcaaagagttg	14	6	7	14	0	2	2	2	0	0	2	3	2	3	2	3	0	2	3	3	0	2	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	C16orf59	NM_025108	exon4	c.C211G	p.P71A	CCCAGTCCACAAG	.	43	5	42	0	.	13	G	2510831	C	G	2510831	3	3	18	1	0	0	0	0	1	0	0	0	1830	855	30	5	225	5	C16orf59	16	2510831	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	458435	2510831	87843922	73	2452											
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	50368662	50368662	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actcttgaaggcgtgtgcttCggcatctccagagtcctctc	6	12	10	13	2	3	2	0	1	3	1	7	2	4	2	2	2	1	2	2	2	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_013263	exon7	c.G847T	p.E283X	GTGCTTCGGCATC	.	13	9	24	0	.	.	A	50368662	C	A	50368662	4	1	18	1	0	0	0	0	0	1	0	0	1507	893	31	2	1155	2	BRD7	16	50368662	Nonsense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	47857831	50368662	39986091	74	2453											
WWP2	11060	hgsc.bcm.edu	37	chr16	69921986	69921986	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcccgaagaaccttccGttgttggtgtgacgtcccca	7	11	10	13	3	0	3	0	2	0	1	3	4	3	3	5	1	1	2	5	1	2	3	rs139052693	alternate_allele	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	WWP2,NS,carcinoma,0,1	WWP2	NM_001270454	exon8	c.G748T	p.V250F	CCTTCCGTTGTTG	.	49	2	51	0	.	0	T	69921986	G	T	69921986	3	4	18	1	0	0	0	0	1	0	0	0	17476	1145	40	2	774	2	WWP2	16	69921986	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	19553324	69921986	20432767	75	2454											
MLLT6	0	broad.mit.edu	37	chr17	36861675	36861675	+	RNA	DEL	G	G	-																															catgagggcgagagcacggcGgggggggcggccagacagag																								novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	MLLT6	.	.	.	.	CACGGCGGGGGGG	.	5	2	5	0	.	80	-	36861675	G	-	36861675	6	5	18	0	1	1	0	1	0	0	0	0	9678	1131	39	0		0	MLLT6	17	36861675	RNA	DEL	G	TCGA-W5-AA2Z-01A-11D-A417-09		36861675	44333535	76	2455											
GRB7	2886	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	37899545	37899545	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaagtacgaactgttcaaGagctccccagtgagtgcatg	11	8	11	11	1	1	2	1	1	0	1	2	3	2	2	3	0	4	4	3	0	4	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001242442	exon5	c.G645T	p.K215N	GTTCAAGAGCTCC	.	39	4	37	0	.	.	T	37899545	G	T	37899545	3	4	18	1	0	0	0	0	1	0	0	0	6800	933	33	3	590	3	GRB7	17	37899545	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	1037870	37899545	43295665	77	2456											
KRTAP9-3	83900	hgsc.bcm.edu	37	chr17	39389206	39389206	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttccagcccacctgtgtgtaCagctgctgccagccttcttg	5	12	9	15	0	1	0	0	0	1	0	2	0	2	0	5	0	6	3	5	0	1	4	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_031962	exon1	c.C453T	p.Y151Y	TGTGTACAGCTGC	.	72	4	60	0	.	.	T	39389206	C	T	39389206	2	4	18	1	0	0	0	0	0	0	0	1	8613	489	17	3		3	KRTAP9-3	17	39389206	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	1489661	39389206	41806004	78	2457											
INTS2	57508	hgsc.bcm.edu	37	chr17	59981823	59981823	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttatatagttaggtacctGacaagtgtagaaaaggccag	15	10	10	6	0	0	2	0	1	0	1	0	2	0	2	2	2	1	3	2	2	9	6	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	INTS2,bladder,carcinoma,0,1	INTS2	NM_020748	exon9	c.C1329A	p.V443V	GTACCTGACAAGT	.	46	2	43	0	.	0	T	59981823	G	T	59981823	2	4	18	1	0	0	0	0	0	0	0	1	7822	1277	45	3		3	INTS2	17	59981823	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	20592617	59981823	21213387	79	2458											
TEX2	55852	hgsc.bcm.edu	37	chr17	62248512	62248512	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggatttttggcacagccacGcccatgtcaagttccgtcag	9	10	10	12	2	2	0	2	0	0	0	3	1	3	1	3	2	1	2	3	2	1	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	TEX2,NS,carcinoma,0,1	TEX2	NM_018469	exon7	c.C2640A	p.G880G	AGCCACGCCCATG	.	30	3	34	0	.	0	T	62248512	G	T	62248512	2	4	18	1	0	0	0	0	0	0	0	1	15840	1074	38	2		2	TEX2	17	62248512	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	2266689	62248512	18946698	80	2459											
ACTG1	71	hgsc.bcm.edu	37	chr17	79478576	79478576	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccatgacaatgccagtggtgCgcccagaggcgtagagggac	10	5	15	11	2	0	3	0	1	0	2	0	4	0	4	3	3	2	1	3	3	2	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	ACTG1,colon,carcinoma,0,1	ACTG1	NM_001614	exon4	c.G440A	p.R147H	GTGGTGCGCCCAG	.	27	2	35	0	.	0	T	79478576	C	T	79478576	3	4	18	1	0	0	0	0	1	0	0	0	196	768	27	1	699	1	ACTG1	17	79478576	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	17230064	79478576	1716634	81	2460											
FSD1	79187	hgsc.bcm.edu;bcgsc.ca	37	chr19	4323106	4323106	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cgagcaactgggcaagacggCcgcctcctggtgcctgcacg	7	5	14	15	4	0	1	0	0	0	1	1	2	1	1	4	3	4	3	4	3	2	0	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_024333	exon11	c.C1163T	p.A388V	AGACGGCCGCCTC	.	50	4	35	0	.	.	T	4323106	C	T	4323106	3	4	18	1	0	0	0	0	1	0	0	0	6105	739	26	3	1205	3	FSD1	19	4323106	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09		4323106	54805877	82	2461											
PNPLA6	10908	hgsc.bcm.edu	37	chr19	7625960	7625960	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agattgtgtcccggattgagCcccccacgagctatgtctct	7	11	10	13	2	1	2	0	1	1	1	3	4	2	3	4	1	2	1	4	1	1	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.,1	.	NM_001166111	exon32	c.C3907T	p.P1303S	ATTGAGCCCCCCA	.	36	2	31	0	.	163	T	7625960	C	T	7625960	3	4	18	1	0	0	0	0	1	0	0	0	12217	739	26	3	4029	3	PNPLA6	19	7625960	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	3302854	7625960	51503023	83	2462											
MUC16	94025	hgsc.bcm.edu	37	chr19	9018540	9018540	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaagttgagggtgaacAgcaccaggagagggccagca	12	5	17	7	0	0	4	0	3	0	1	0	5	0	4	2	4	3	3	2	4	2	1	rs200155559	bycluster	TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_024690	exon24	c.T37634C	p.L12545P	GTGAACAGCACCA	.	77	6	68	0	.	.	G	9018540	A	G	9018540	3	3	18	1	0	0	0	0	1	0	0	0	10021	188	7	4	6133	4	MUC16	19	9018540	Missense_Mutation	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	1392580	9018540	50110443	84	2463											
CALR3	125972	hgsc.bcm.edu	37	chr19	16593513	16593513	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tacgggggcttctggagcatCggcgctggccagtccccatc	5	8	14	14	3	1	0	0	0	1	0	4	1	2	1	3	5	2	3	3	5	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	CALR3,NS,carcinoma,0,1	CALR3	NM_145046	exon6	c.G762A	p.P254P	GAGCATCGGCGCT	.	32	2	36	0	.	0	T	16593513	C	T	16593513	2	4	18	1	0	0	0	0	0	0	0	1	2611	871	31	1		1	CALR3	19	16593513	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	7574973	16593513	42535470	85	2464											
KCNN1	0	broad.mit.edu	37	chr19	18092607	18092607	+	RNA	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcgctagagctggcagtgtgCgccattcacccggtgcccgg	5	8	14	14	4	1	1	1	0	0	1	2	1	1	1	3	3	3	3	3	3	1	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	KCNN1	NM_002248	exon5	c.C588T	p.C196C	AGTGTGCGCCATT	.	42	4	49	1	.	74	T	18092607	C	T	18092607	1	4	18	0	1	0	0	0	0	0	0	0	8122	776	27	1		1	KCNN1	19	18092607	RNA	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	1499094	18092607	41036376	86	2465											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48925132	48925132	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acatccgcagcaactatcccGacatgcacagctacatggtg	12	7	8	14	2	0	0	0	0	0	0	2	1	2	0	2	1	5	4	2	1	3	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	GRIN2D,NS,carcinoma,0,1	GRIN2D	NM_000836	exon10	c.G2182A	p.D728N	TATCCCGACATGC	.	40	2	16	0	.	0	A	48925132	G	A	48925132	3	1	18	1	0	0	0	0	1	0	0	0	6823	1058	37	1	2216	1	GRIN2D	19	48925132	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	30832525	48925132	10203851	87	2466											
SHANK1	50944	ucsc.edu	37	chr19	51165465	51165465	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccgggggcagcgagagCaggcgggtcggtgagaggga	7	5	22	7	4	0	2	0	1	0	2	2	5	1	3	1	6	2	2	1	6	0	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	SHANK1	NM_016148	exon23	c.G6243A	p.L2081L	CGAGAGCAGGCGG	.	36	4	21	0	.	210	T	51165465	C	T	51165465	2	4	18	1	0	0	0	0	0	0	0	1	14319	697	25	3		3	SHANK1	19	51165465	Silent	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	2240333	51165465	7963518	88	2467											
ZNF766	90321	hgsc.bcm.edu;bcgsc.ca	37	chr19	52793998	52793998	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcatacctagcacaacattgGagaattcatacaggagagaa	17	8	8	8	0	2	2	2	0	0	2	2	5	2	3	1	2	4	1	1	2	6	5	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_001010851	exon4	c.G954T	p.W318C	ACATTGGAGAATT	.	43	4	38	0	.	.	T	52793998	G	T	52793998	3	4	18	1	0	0	0	0	1	0	0	0	18190	1183	41	3	968	3	ZNF766	19	52793998	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	1628533	52793998	6334985	89	2468											
SIRPD	128646	hgsc.bcm.edu	37	chr20	1532455	1532455	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagatttcacggatgcgggtGgaaaagtctgtgttgccagg	9	10	16	6	2	2	1	1	0	1	1	2	4	2	3	1	4	2	1	1	4	2	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_178460	exon2	c.C303A	p.S101S	GCGGGTGGAAAAG	.	80	4	66	0	.	.	T	1532455	G	T	1532455	2	4	18	1	0	0	0	0	0	0	0	1	14390	1335	47	3		3	SIRPD	20	1532455	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		1532455	61493065	90	2469											
MCM8	84515	hgsc.bcm.edu;bcgsc.ca	37	chr20	5948523	5948523	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgttccttttgtatattgaaGcaaattctattagtaatagc	12	18	6	5	0	1	1	0	1	1	0	2	1	2	1	1	0	2	4	1	0	8	11	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_032485	exon10	c.G1075T	p.A359S	ATTGAAGCAAATT	.	75	4	86	0	.	.	T	5948523	G	T	5948523	3	4	18	1	0	0	0	0	1	0	0	0	9443	985	34	3	1109	3	MCM8	20	5948523	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09	4416068	5948523	57076997	91	2470											
PATZ1	23598	hgsc.bcm.edu	37	chr22	31731753	31731753	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtctgccatgtatgctgcccGcaagtacttcccacacacct	8	10	7	16	1	1	0	0	0	1	0	2	0	2	0	4	0	4	4	4	0	3	3	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	ZNF278,NS,carcinoma,0,1	ZNF278	NM_032050	exon3	c.C1432T	p.R478W	CTGCCCGCAAGTA	.	38	2	65	0	.	0	A	31731753	G	A	31731753	3	1	18	1	0	0	0	0	1	0	0	0	11523	1086	38	1	643	1	PATZ1	22	31731753	Missense_Mutation	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		31731753	19572813	92	2471											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	11	6	19	5	3	1	2	1	0	0	2	2	6	2	4	1	5	1	2	1	5	4	2	rs2801626		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	107	6	91	1	.	28	A	51076024	G	A	51076024	2	1	18	1	0	0	0	0	0	0	0	1	10774	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-W5-AA2Z-01A-11D-A417-09		51076024	104194536	93	2472											
COL4A5	1287	broad.mit.edu	37	chrX	107842054	107842054	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccaggcccagtaggtgaaaaAggcatacaaggtgtggcagg	13	5	15	8	0	0	1	0	1	0	0	0	1	0	1	2	6	1	3	2	6	5	2	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	COL4A5	NM_000495	exon25	c.A1902G	p.K634K	TGAAAAAGGCATA	.	98	3	90	1	.	262	G	107842054	A	G	107842054	2	3	18	1	0	0	0	0	0	0	0	1	3717	69	3	4		4	COL4A5	23	107842054	Silent	SNP	A	TCGA-W5-AA2Z-01A-11D-A417-09	56766030	107842054	47428506	94	2473											
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	130218321	130218321	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	aaaggaagatgagtctcaatCcgattgcgaaacaaatcccc	16	7	8	10	2	1	2	1	1	1	1	4	5	3	3	3	1	2	0	3	1	5	1	novel		TCGA-W5-AA2Z-01A-11D-A417-09	TCGA-W5-AA2Z-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b68bdaab-f992-4533-be20-4b56b7dc9031	354bfffb-4959-49d7-b276-66342e562181	.	.	NM_144967	exon5	c.C688G	p.P230A	CTCAATCCGATTG	.	44	13	49	0	.	.	G	130218321	C	G	130218321	3	3	18	1	0	0	0	0	1	0	0	0	880	855	30	5	702	5	ARHGAP36	23	130218321	Missense_Mutation	SNP	C	TCGA-W5-AA2Z-01A-11D-A417-09	22376267	130218321	25052239	95	2474											
PADI6	353238	broad.mit.edu	37	chr1	17725155	17725162	+	RNA	DEL	CCCCCCCA	CCCCCCCA	-																															tctccttgctcccccgccccCccccccacccacccacccac																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PADI6	.	.	.	.	CGCCCCCCCCCCC	.	13	3	7	0	.	51	-	17725162	CCCCCCCA	-	17725155	6	5	19	0	1	1	0	1	0	0	0	0	11428	638	22	0		0	PADI6	1	17725155	RNA	DEL	CCCCCCCA	TCGA-W5-AA30-01A-31D-A417-09		17725155	231525466	1	2475											
PTGER3	5733	broad.mit.edu	37	chr1	71512790	71512790	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtgcggcgccctgatggcCagcgcccgctcgacggccat	5	5	14	17	6	0	1	0	1	0	0	1	2	0	1	4	3	2	1	4	3	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PTGER3	NM_001126044	exon1	c.G471C	p.L157L	GATGGCCAGCGCC	.	44	6	32	0	.	246	G	71512790	C	G	71512790	2	3	19	1	0	0	0	0	0	0	0	1	12794	581	21	5		5	PTGER3	1	71512790	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	53787635	71512790	177737831	2	2476											
CRYZ	1429	bcgsc.ca	37	chr1	75172874	75172874	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataattatatcaattcctttCtcaccaacatacttctatat	14	17	0	10	0	3	0	2	0	2	0	5	0	4	0	2	0	2	0	2	0	8	9	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CRYZ	NM_001889	exon7	c.G645T	p.E215D	TCCTTTCTCACCA	.	67	4	53	0	.	28	A	75172874	A	A	75172874	3	1	19	1	0	0	0	0	1	0	0	0	3945	912	32	3	356	3	CRYZ	1	75172874	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	3660084	75172874	174077747	3	2477											
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	76540564	76540564	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagcgccatggcctgcatcCtgaaggtaacgacttggatc	9	8	13	11	2	0	1	0	1	0	0	2	4	1	3	3	4	3	2	3	4	2	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001160011	exon1	c.C13G	p.L5V	TGCATCCTGAAGG	.	44	7	49	0	.	.	G	76540564	C	G	76540564	3	3	19	1	0	0	0	0	1	0	0	0	15281	680	24	5	15	5	ST6GALNAC3	1	76540564	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	1367690	76540564	172710057	4	2478											
OLFM3	118427	hgsc.bcm.edu	37	chr1	102269877	102269877	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	attgttccaggcatagagagCtcgatctcttgcattgtagt	9	14	10	8	1	1	1	0	0	1	1	4	3	2	1	1	1	2	5	1	1	2	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OLFM3_ENST00000338858,caecum,carcinoma,0,2	OLFM3_ENST00000338858	NM_058170	exon6	c.G1294A	p.A432T	AGAGAGCTCGATC	.	24	2	36	0	.	0	T	102269877	C	T	102269877	3	4	19	1	0	0	0	0	1	0	0	0	10902	797	28	3	86	3	OLFM3	1	102269877	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	25729313	102269877	146980744	5	2479											
PRPF38B	55119	hgsc.bcm.edu	37	chr1	109238706	109238706	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggaattgtttctacagcattTtgcctgttatacaaattatt	11	18	6	6	0	1	0	0	0	1	0	1	1	1	1	1	1	4	3	1	1	6	9	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PRPF38B,NS,carcinoma,0,1	PRPF38B	NM_018061	exon3	c.T387C	p.F129F	AGCATTTTGCCTG	.	46	2	47	0	.	0	C	109238706	T	C	109238706	2	2	19	1	0	0	0	0	0	0	0	1	12620	1838	64	4		4	PRPF38B	1	109238706	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	6968829	109238706	140011915	6	2480											
PHTF1	10745	hgsc.bcm.edu	37	chr1	114247312	114247312	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agataggaacgcagtgataaCcatattttaatattctccac	15	12	6	8	1	1	2	0	1	1	1	2	3	1	3	2	1	2	1	2	1	6	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PHTF1,colon,carcinoma,0,1	PHTF1	NM_006608	exon13	c.G1779T	p.W593C	TGATAACCATATT	.	49	2	48	0	.	0	A	114247312	C	A	114247312	3	1	19	1	0	0	0	0	1	0	0	0	11910	508	18	3	533	3	PHTF1	1	114247312	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	5008606	114247312	135003309	7	2481											
BCAN	63827	hgsc.bcm.edu	37	chr1	156616887	156616887	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggcgctgagcgagctgcgccCcaacgactcaggtatctatc	8	7	12	14	4	2	1	1	1	1	0	3	3	2	1	2	2	4	3	2	2	3	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BCAN,NS,carcinoma,0,1	BCAN	NM_198427	exon3	c.C386G	p.P129R	TGCGCCCCAACGA	.	37	2	19	0	.	0	G	156616887	C	G	156616887	3	3	19	1	0	0	0	0	1	0	0	0	1343	623	22	5	392	5	BCAN	1	156616887	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	42369575	156616887	92633734	8	2482											
DDR2	4921	hgsc.bcm.edu	37	chr1	162737043	162737043	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatgcttaaagttgatgacaGcaacactcggatcctgattg	13	11	9	8	1	0	3	0	3	0	0	2	4	1	4	1	1	3	3	1	1	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DDR2_ENST00000367922,NS,carcinoma,0,2	DDR2_ENST00000367922	NM_001014796	exon12	c.G1187A	p.S396N	ATGACAGCAACAC	.	43	2	23	0	.	0	A	162737043	G	A	162737043	3	1	19	1	0	0	0	0	1	0	0	0	4360	971	34	3	1221	3	DDR2	1	162737043	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	6120156	162737043	86513578	9	2483											
LRRC52	440699	hgsc.bcm.edu;broad.mit.edu	37	chr1	165513993	165513993	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccaacaccacctctttgaggTacctggacctcagaaatacc	12	8	6	15	0	2	2	1	1	1	1	2	3	2	3	6	2	3	1	6	2	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001005214	exon1	c.T460C	p.Y154H	TTGAGGTACCTGG	.	78	4	43	0	.	.	C	165513993	T	C	165513993	3	2	19	1	0	0	0	0	1	0	0	0	9055	1638	57	4	462	4	LRRC52	1	165513993	Missense_Mutation	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	2776950	165513993	83736628	10	2484											
ADCY10	55811	broad.mit.edu	37	chr1	167873153	167873153	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgcacttatgtggtagttGaggatctccaccaactgctc	9	13	9	10	0	1	1	0	1	1	0	3	2	1	2	2	2	3	4	2	2	3	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ADCY10,NS,carcinoma,-1,1	ADCY10	NM_018417	exon3	c.C225A	p.L75L	GTAGTTGAGGATC	.	87	3	40	0	.	175	T	167873153	G	T	167873153	2	4	19	1	0	0	0	0	0	0	0	1	292	1277	45	3		3	ADCY10	1	167873153	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	2359160	167873153	81377468	11	2485											
KLHL20	27252	broad.mit.edu	37	chr1	173722361	173722361	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcataggtgctgcagCatgttcgtttgcctttgctt	4	19	9	9	1	1	0	1	0	1	0	3	0	1	0	1	1	5	6	1	1	1	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	KLHL20	NM_014458	exon5	c.C766T	p.H256Y	CTGCAGCATGTTC	.	43	4	26	0	.	54	T	173722361	C	T	173722361	3	4	19	1	0	0	0	0	1	0	0	0	8418	710	25	3	780	3	KLHL20	1	173722361	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	5849208	173722361	75528260	12	2486											
CACNA1E	777	hgsc.bcm.edu	37	chr1	181727219	181727219	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caccattatggccatgatcgCcttgaatactgttgtgctga	9	13	9	10	1	0	3	0	3	0	0	1	3	0	3	3	1	2	2	3	1	3	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CACNA1E_ENST00000367573,colon,carcinoma,0,2	CACNA1E_ENST00000367573	NM_001205293	exon31	c.C4466T	p.A1489V	TGATCGCCTTGAA	.	34	2	28	0	.	0	T	181727219	C	T	181727219	3	4	19	1	0	0	0	0	1	0	0	0	2560	739	26	3	4588	3	CACNA1E	1	181727219	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	8004858	181727219	67523402	13	2487											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181767937	181767937	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggctgtcaacaacctGctaagtgacacggaagaaga	13	7	13	8	1	1	3	1	1	0	2	1	4	1	4	1	3	3	2	1	3	5	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001205293	exon48	c.G6909A	p.L2303L	CAACCTGCTAAGT	.	67	7	33	0	.	.	A	181767937	G	A	181767937	2	1	19	1	0	0	0	0	0	0	0	1	2560	1306	46	3		3	CACNA1E	1	181767937	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	40718	181767937	67482684	14	2488											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182846025	182846025	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaacgatgttgtttatgtcAttgactcctgcaagtaagtt	11	16	8	6	1	1	1	1	1	0	0	2	2	2	1	1	0	2	5	1	0	5	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001357	exon19	c.A2185G	p.I729V	TATGTCATTGACT	.	89	36	31	0	.	.	G	182846025	A	G	182846025	3	3	19	1	0	0	0	0	1	0	0	0	4544	217	8	4	2255	4	DHX9	1	182846025	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	1078088	182846025	66404596	15	2489											
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	196295911	196295911	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tctataatatgccctgagagGaacaataaagttatataatc	17	12	6	6	0	1	1	0	1	1	1	2	3	1	2	1	1	2	1	1	1	10	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198503	exon19	c.C2212T	p.P738S	TGAGAGGAACAAT	.	127	19	53	0	.	.	A	196295911	G	A	196295911	3	1	19	1	0	0	0	0	1	0	0	0	8136	1174	41	3	1235	3	KCNT2	1	196295911	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	13449886	196295911	52954710	16	2490											
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201984393	201984393	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggccggcgactcgtctacaAgtttggcaaaaactcaagcg	11	8	11	11	4	2	0	1	0	1	0	3	1	2	0	1	3	3	2	1	3	5	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001114309	exon9	c.A1058C	p.K353T	TCTACAAGTTTGG	.	117	25	56	0	.	.	C	201984393	A	C	201984393	3	2	19	1	0	0	0	0	1	0	0	0	5083	72	3	4	1088	4	ELF3	1	201984393	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	5688482	201984393	47266228	17	2491											
LAX1	54900	broad.mit.edu	37	chr1	203743058	203743058	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcccacatccatgccacagAgtacgcggtgggtatctatg	10	8	11	12	2	1	1	0	0	1	1	2	1	2	1	3	2	3	2	3	2	3	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	LAX1	NM_017773	exon5	c.A446G	p.E149G	CCACAGAGTACGC	.	13	3	12	0	.	48	G	203743058	A	G	203743058	3	3	19	1	0	0	0	0	1	0	0	0	8687	304	11	4	509	4	LAX1	1	203743058	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	1758665	203743058	45507563	18	2492											
KCTD3	51133	hgsc.bcm.edu	37	chr1	215753330	215753330	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agctgcatatgcccattttgCtgtgtgttacaggtagtgta	8	15	11	7	0	0	0	0	0	0	0	0	0	0	0	1	1	5	6	1	1	4	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_016121	exon8	c.C614T	p.A205V	ATTTTGCTGTGTG	.	88	3	60	0	.	.	T	215753330	C	T	215753330	3	4	19	1	0	0	0	0	1	0	0	0	8154	797	28	3	644	3	KCTD3	1	215753330	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	12010272	215753330	33497291	19	2493											
ACBD3	64746	broad.mit.edu	37	chr1	226349273	226349296	+	In_Frame_Del	DEL	CCTTTCCTCTTCCTCCCGTCGAAG	CCTTTCCTCTTCCTCCCGTCGAAG	-																															ctttcttcttctatccgtctCctttcctcttcctcccgtcg																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ACBD3	NM_022735	exon4	c.664_687del	p.222_229del	CCGTCTCCTTTCC	.	55	6	51	0	.	38	-	226349296	CCTTTCCTCTTCCTCCCGTCGAAG	-	226349273	7	5	19	1	0	1	0	1	0	0	0	0	123	854	30	0	919	0	ACBD3	1	226349273	In_Frame_Del	DEL	CCTTTCCTCTTCCTCCCGTCGAAG	TCGA-W5-AA30-01A-31D-A417-09	10595943	226349273	22901348	20	2494											
JMJD4	65094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	227922428	227922428	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctgtatgtactctttccagtAggtgatgtagtctctgagag	8	15	11	7	0	2	2	0	2	2	1	4	3	3	2	1	1	1	4	1	1	4	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_023007	exon2	c.T490C	p.Y164H	TCCAGTAGGTGAT	.	29	7	25	0	.	.	G	227922428	A	G	227922428	3	3	19	1	0	0	0	0	1	0	0	0	7995	420	15	4	921	4	JMJD4	1	227922428	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	1573155	227922428	21328193	21	2495											
TBCE	6905	broad.mit.edu	37	chr1	235602123	235602123	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagagctgagcttgactacCgaaaagcttttggaaatgag	13	9	13	6	1	0	4	0	3	0	1	0	7	0	5	1	2	4	3	1	2	4	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	TBCE,NS,carcinoma,-1,3	TBCE	NM_003193	exon13	c.C1156A	p.R386R	GACTACCGAAAAG	.	77	3	43	0	.	40	A	235602123	C	A	235602123	2	1	19	1	0	0	0	0	0	0	0	1	15694	644	23	2		2	TBCE	1	235602123	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	7679695	235602123	13648498	22	2496											
SCCPDH	51097	hgsc.bcm.edu	37	chr1	246929442	246929442	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcttctcatctgcctaaggcGtaagtttggttttcttccaa	7	16	8	10	1	3	0	1	0	3	0	5	0	4	0	2	2	1	4	2	2	3	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_016002	exon11	c.1184+1G>A	.	TAAGGCGTAAGTT	.	61	4	46	0	.	.	A	246929442	G	A	246929442	5	1	19	1	0	0	0	0	0	0	1	0	13938	1159	40	1	1227	1	SCCPDH	1	246929442	Splice_Site	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	11327319	246929442	2321179	23	2497											
OR2L8	391190	hgsc.bcm.edu	37	chr1	248112794	248112794	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctcgtgtttcccttcattgGtatttcatgttcctatggcc	4	19	7	11	1	3	0	2	0	1	0	6	0	5	0	3	2	0	3	3	2	2	7	rs200574966		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR2L8,NS,carcinoma,0,2	OR2L8	NM_001001963	exon1	c.G635C	p.G212A	TCATTGGTATTTC	.	86	5	62	1	.	0	C	248112794	G	C	248112794	3	2	19	1	0	0	0	0	1	0	0	0	11057	1261	44	5	637	5	OR2L8	1	248112794	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	1183352	248112794	1137827	24	2498											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	21225533	21225533	+	Frame_Shift_Del	DEL	G	G	-																															tatgtttccttaactcgaaaGgaagtgtaatcactaggtct																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_000384	exon29	c.12762delT	p.P4254fs	TCGAAAGGAAGTG	.	52	12	45	0	.	.	-	21225533	G	-	21225533	7	5	19	1	0	1	0	1	0	0	0	0	782	1000	35	0	934	0	APOB	2	21225533	Frame_Shift_Del	DEL	G	TCGA-W5-AA30-01A-31D-A417-09		21225533	221973840	25	2499											
OTOF	9381	hgsc.bcm.edu;ucsc.edu	37	chr2	26712145	26712145	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagggtgccactgcgcagcaGgttcttggagtgaatcacct	8	9	13	11	1	2	1	1	1	1	0	2	2	2	2	2	3	3	3	2	3	1	2	rs146051471	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_194248	exon11	c.C979A	p.L327M	GCAGCAGGTTCTT	.	16	4	14	0	.	.	T	26712145	G	T	26712145	3	4	19	1	0	0	0	0	1	0	0	0	11350	991	35	3	5487	3	OTOF	2	26712145	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5486612	26712145	216487228	26	2500											
PPP1CB	5500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	29006824	29006824	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gattcggagaattatgagacCtactgatgtccctgatacag	12	11	10	8	1	0	4	0	3	0	2	2	7	1	4	2	1	2	0	2	1	4	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_206876	exon6	c.C572T	p.P191L	TGAGACCTACTGA	.	74	6	73	0	.	.	T	29006824	C	T	29006824	3	4	19	1	0	0	0	0	1	0	0	0	12399	681	24	3	590	3	PPP1CB	2	29006824	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	2294679	29006824	214192549	27	2501											
LTBP1	4052	hgsc.bcm.edu;bcgsc.ca	37	chr2	33540337	33540337	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agatggccgtacgtgtgaagGtaagataaaccatacgaaat	16	8	11	6	3	0	3	0	1	0	2	0	4	0	3	2	2	3	2	2	2	7	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_206943	exon24	c.3730+1G>T	.	GTGAAGGTAAGAT	.	85	4	61	0	.	.	T	33540337	G	T	33540337	5	4	19	1	0	0	0	0	0	0	1	0	9118	1275	44	3	3880	3	LTBP1	2	33540337	Splice_Site	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	4533513	33540337	209659036	28	2502											
PREPL	9581	hgsc.bcm.edu;bcgsc.ca	37	chr2	44550432	44550432	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tattttgatagggacagtaaCgttttatgtagttcttgtgt	9	19	10	3	1	1	1	0	1	1	0	1	2	1	2	0	1	1	4	0	1	5	10	rs375292548	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001171603	exon12	c.G1865A	p.R622H	CAGTAACGTTTTA	.	60	4	63	0	.	.	T	44550432	C	T	44550432	3	4	19	1	0	0	0	0	1	0	0	0	12527	536	19	1	334	1	PREPL	2	44550432	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	11010095	44550432	198648941	29	2503											
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	68371715	68371715	+	Splice_Site	SNP	A	A	C																															tacatagaatacagggactcAccatctcggctgccagtcac																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_138458	exon4	c.415+2T>G	.	GGACTCACCATCT	.	50	14	35	0	.	.	C	68371715	A	C	68371715	5	2	19	1	0	0	0	0	0	0	1	0	17399	173	6	4	680	4	WDR92	2	68371715	Splice_Site	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	23821283	68371715	174827658	30	2504	10	2									
WDR92	116143	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	68371718	68371718	+	Missense_Mutation	SNP	A	A	T																															atagaatacagggactcaccAtctcggctgccagtcacaat																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001256476	exon3	c.T414A	p.D138E	CTCACCATCTCGG	.	52	14	37	0	.	.	T	68371718	A	T	68371718	3	4	19	1	0	0	0	0	1	0	0	0	17399	231	8	5	683	5	WDR92	2	68371718	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	3	68371718	174827655	31	2505	10	2									
ALMS1	7840	hgsc.bcm.edu	37	chr2	73676231	73676231	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtaacctctacttcctctgcGtcctcttcacttggagaaaa	9	13	6	13	1	4	1	1	0	3	1	6	2	6	1	3	1	3	1	3	1	4	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ALMS1,colon,carcinoma,0,1	ALMS1	NM_015120	exon8	c.G2574T	p.A858A	CTCTGCGTCCTCT	.	40	3	33	0	.	0	T	73676231	G	T	73676231	2	4	19	1	0	0	0	0	0	0	0	1	531	1132	40	2		2	ALMS1	2	73676231	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5304513	73676231	169523142	32	2506											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	80816537	80816537	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	cagaagtggccaaatgggacGacagcggcaatgatatcatt	14	7	12	8	2	1	2	1	1	0	1	1	4	1	3	1	3	1	1	1	3	4	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CTNNA2_ENST00000466387,colon,carcinoma,0,1	CTNNA2_ENST00000466387	NM_001164883	exon15	c.G2116C	p.D706H	TGGGACGACAGCG	.	34	9	21	0	.	0	C	80816537	G	C	80816537	3	2	19	1	0	0	0	0	1	0	0	0	4037	1058	37	5	1962	5	CTNNA2	2	80816537	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7140306	80816537	162382836	33	2507											
MAP4K4	9448	hgsc.bcm.edu	37	chr2	102490597	102490597	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccataaggcaagatcctaccCggaaaggctcagtggtcaat	13	7	10	11	1	2	1	2	0	0	1	3	2	3	2	3	4	1	2	3	4	5	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MAP4K4,NS,carcinoma,0,2	MAP4K4	NM_145686	exon24	c.C2791A	p.R931R	CCTACCCGGAAAG	.	50	2	44	0	.	0	A	102490597	C	A	102490597	2	1	19	1	0	0	0	0	0	0	0	1	9312	643	23	2		2	MAP4K4	2	102490597	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	21674060	102490597	140708776	34	2508											
AMMECR1L	83607	broad.mit.edu	37	chr2	128628430	128628430	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcatcctcaaagttagtaagGagggagacagagcagaaaag	17	5	13	6	0	1	3	1	0	0	3	2	5	2	4	1	2	1	4	1	2	5	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	AMMECR1L	NM_031445	exon5	c.C591A	p.L197L	AGTAAGGAGGGAG	.	35	3	26	0	.	22	T	128628430	G	T	128628430	2	4	19	1	0	0	0	0	0	0	0	1	575	1161	41	3		3	AMMECR1L	2	128628430	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	26137833	128628430	114570943	35	2509											
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu	37	chr2	160964274	160964274	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacaccagtagcttccagatGcacagtaggacaaccccgat	13	6	9	13	1	0	1	0	0	0	1	1	4	1	2	4	1	3	4	4	1	3	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_000888	exon14	c.C2184T	p.C728C	CCAGATGCACAGT	.	52	4	45	0	.	.	A	160964274	G	A	160964274	2	1	19	1	0	0	0	0	0	0	0	1	7943	1311	46	3		3	ITGB6	2	160964274	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	32335844	160964274	82235099	36	2510											
RBMS1	5937	bcgsc.ca	37	chr2	161157164	161157164	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagacaaacaacataccaGaaactcctggtggtgtctta	14	10	7	10	0	2	2	1	0	1	2	3	2	3	2	2	2	4	0	2	2	5	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	RBMS1	NM_016836	exon6	c.C638A	p.S213Y	ATACCAGAAACTC	.	70	4	67	0	.	34	T	161157164	T	T	161157164	3	4	19	1	0	0	0	0	1	0	0	0	13200	942	33	3	614	3	RBMS1	2	161157164	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	192890	161157164	82042209	37	2511											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	179411745	179411745	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cataccaactggattttgagCcattataggtcttgaagctt	11	14	8	8	0	1	2	0	2	1	0	1	3	1	3	2	2	4	1	2	2	5	7	rs375657115		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001267550	exon340	c.G94507A	p.A31503T	TTTGAGCCATTAT	.	25	4	18	0	.	.	T	179411745	C	T	179411745	3	4	19	1	0	0	0	0	1	0	0	0	16797	739	26	3	13564	3	TTN	2	179411745	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	18254581	179411745	63787628	38	2512											
TTN	7273	bcgsc.ca	37	chr2	179615544	179615544	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagtctcatatacttcctcCttctcacatacattagtgat	10	15	5	11	0	2	1	2	1	2	0	6	2	4	2	2	1	2	0	2	1	4	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	TTN	NM_133379	exon46	c.G11583A	p.K3861K	TTCCTCCTTCTCA	.	27	3	32	0	.	18412	T	179615544	T	T	179615544	2	4	19	1	0	0	0	0	0	0	0	1	16797	680	24	3		3	TTN	2	179615544	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	203799	179615544	63583829	39	2513											
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	242572711	242572711	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcggtgtcgcggtaagtgaTgagctgggagggctctgggc	5	9	20	7	3	1	2	0	2	1	0	2	3	1	3	0	5	2	3	0	5	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015963	exon2	c.A861T	p.S287S	AAGTGATGAGCTG	.	19	5	7	0	.	.	A	242572711	T	A	242572711	2	1	19	1	0	0	0	0	0	0	0	1	15906	1451	51	5		5	THAP4	2	242572711	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	62957167	242572711	626662	40	2514											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52651334	52651334	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacatcagcttcatgtcttCtatcattccctcttcaccag	9	14	4	14	0	7	0	4	0	3	0	8	1	8	0	2	0	2	1	2	0	2	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_018313	exon15	c.G1762T	p.E588X	TGTCTTCTATCAT	.	25	6	49	0	.	.	A	52651334	C	A	52651334	4	1	19	1	0	0	0	0	0	1	0	0	11538	922	32	3	3206	3	PBRM1	3	52651334	Nonsense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		52651334	145371096	41	2515											
MINA	84864	hgsc.bcm.edu	37	chr3	97668828	97668828	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaggaagccacttaatCgtcttgtagcaacagttgtg	10	12	9	10	1	2	0	1	0	1	0	4	1	3	1	2	1	3	3	2	1	4	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001042533	exon7	c.G920T	p.R307L	CTTAATCGTCTTG	.	52	4	24	0	.	.	A	97668828	C	A	97668828	3	1	19	1	0	0	0	0	1	0	0	0	9634	884	31	2	493	2	MINA	3	97668828	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	45017494	97668828	100353602	42	2516											
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	128853021	128853021	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tctctctgctttccacttttCcactaactcggctctgactg	5	16	5	15	1	3	1	0	1	3	0	7	1	5	1	2	1	2	2	2	1	1	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001199469	exon10	c.G625A	p.E209K	ACTTTTCCACTAA	.	32	8	22	0	.	.	T	128853021	C	T	128853021	3	4	19	1	0	0	0	0	1	0	0	0	7910	864	30	3	310	3	ISY1	3	128853021	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	31184193	128853021	69169409	43	2517											
KCNMB2	10242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	178560605	178560605	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctctacagttccaacgtgctGttccattcactcttctggcc	6	14	6	15	1	4	0	1	0	3	0	6	0	6	0	3	1	3	3	3	1	2	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_005832	exon6	c.G588A	p.L196L	CGTGCTGTTCCAT	.	45	18	38	0	.	.	A	178560605	G	A	178560605	2	1	19	1	0	0	0	0	0	0	0	1	8119	1364	48	3		3	KCNMB2	3	178560605	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	49707584	178560605	19461825	44	2518											
SOX2	6657	hgsc.bcm.edu	37	chr3	181432147	181432147	+	RNA	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctaatatcatccttataacaGgtacattttcaacttaagtt	14	16	3	8	0	2	0	2	0	0	0	3	0	3	0	1	1	3	2	1	1	7	9	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	ATAACAGGTACAT	.	65	2	46	0	.	.	T	181432147	G	T	181432147	1	4	19	0	1	0	0	0	0	0	0	0	15003	1015	35	3		3	SOX2	3	181432147	RNA	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	2871542	181432147	16590283	45	2519											
CLDN16	10686	hgsc.bcm.edu	37	chr3	190106072	190106072	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccgccacttaagtggggccaGggctggtgtctgcccatgtt	5	10	14	12	1	1	0	0	0	1	0	1	0	1	0	4	4	1	2	4	4	1	2	rs201380153	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,1	.	NM_006580	exon1	c.G164T	p.R55M	GGGCCAGGGCTGG	.	31	2	23	0	.	59	T	190106072	G	T	190106072	3	4	19	1	0	0	0	0	1	0	0	0	3500	1000	35	3	166	3	CLDN16	3	190106072	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	8673925	190106072	7916358	46	2520											
TACC3	10460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1729639	1729639	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaaccaaatggtgtcTccaggaaaagtgtctggcag	12	9	12	8	0	3	1	0	1	3	1	4	3	3	2	2	3	1	1	2	3	4	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006342	exon4	c.T510C	p.S170S	GGTGTCTCCAGGA	.	59	8	39	0	.	.	C	1729639	T	C	1729639	2	2	19	1	0	0	0	0	0	0	0	1	15560	1538	54	4		4	TACC3	4	1729639	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09		1729639	189424637	47	2521											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	30723183	30723183	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggagggccccgccgacgtcCgcatcggcaacgtggcttca	7	5	14	15	6	1	0	1	0	0	0	3	2	2	1	4	4	1	3	4	4	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032457	exon1	c.C139T	p.R47C	GACGTCCGCATCG	.	32	5	26	0	.	.	T	30723183	C	T	30723183	3	4	19	1	0	0	0	0	1	0	0	0	11563	652	23	1	141	1	PCDH7	4	30723183	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	28993544	30723183	160431093	48	2522											
HELQ	113510	hgsc.bcm.edu	37	chr4	84374566	84374566	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atattggtgtctgggccttcGcatttccagtcatggcattt	6	16	10	9	1	2	0	1	0	1	0	4	0	3	0	2	3	0	2	2	3	1	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HELQ,NS,carcinoma,0,1	HELQ	NM_133636	exon2	c.C830T	p.A277V	GCCTTCGCATTTC	.	72	3	71	0	.	0	A	84374566	G	A	84374566	3	1	19	1	0	0	0	0	1	0	0	0	7088	1087	38	1	2543	1	HELQ	4	84374566	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	53651383	84374566	106779710	49	2523											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114282026	114282026	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaggctggcttatattGctgatcaccttggcttcagc	9	12	11	9	0	2	1	2	1	0	0	2	2	2	2	1	4	2	4	1	4	3	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001148	exon39	c.G10729A	p.A3577T	TATATTGCTGATC	.	29	6	30	0	.	.	A	114282026	G	A	114282026	3	1	19	1	0	0	0	0	1	0	0	0	617	1319	46	3	10948	3	ANK2	4	114282026	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	29907460	114282026	76872250	50	2524											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123210346	123210346	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagtaatacaaaaagtttcTggtaagatgatctagtacct	16	12	8	5	0	2	2	0	1	2	1	2	3	2	2	1	1	2	4	1	1	8	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015312	exon52	c.T9387C	p.S3129S	AGTTTCTGGTAAG	.	67	6	38	0	.	.	C	123210346	T	C	123210346	2	2	19	1	0	0	0	0	0	0	0	1	8250	1594	55	4		4	KIAA1109	4	123210346	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	8928320	123210346	67943930	51	2525											
TBC1D9	23158	broad.mit.edu	37	chr4	141677078	141677080	+	In_Frame_Del	DEL	CCG	CCG	-																															cacggtccttacccgccagtCcgccgccgccgcctccatcg																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	TBC1D9	NM_015130	exon1	c.120_122del	p.40_41del	GCCAGTCCGCCGC	.	6	2	7	0	.	198	-	141677080	CCG	-	141677078	7	5	19	1	0	1	0	1	0	0	0	0	15687	855	30	0	3762	0	TBC1D9	4	141677078	In_Frame_Del	DEL	CCG	TCGA-W5-AA30-01A-31D-A417-09	18466732	141677078	49477198	52	2526											
FBXW7	55294	hgsc.bcm.edu	37	chr4	153250882	153250882	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	catcagaaccactaactattCggttaccacaaaactgtaag	16	9	5	11	1	1	1	1	0	0	1	2	1	1	1	2	1	4	2	2	1	7	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FBXW7_NM_018315_2,NS,carcinoma,-1,5	FBXW7_NM_018315_2	NM_033632	exon8	c.G1178A	p.R393Q	ACTATTCGGTTAC	.	44	2	47	0	.	-1	T	153250882	C	T	153250882	3	4	19	1	0	0	0	0	1	0	0	0	5802	884	31	1	965	1	FBXW7	4	153250882	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	11573804	153250882	37903394	53	2527											
GRIA2	2891	hgsc.bcm.edu	37	chr4	158257613	158257613	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caaagcccttcatgagcctcGggatatctatcatgatcaag	12	10	8	11	1	4	2	3	2	1	0	5	3	4	3	2	1	2	0	2	1	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	GRIA2_ENST00000264426,colon,carcinoma,0,3	GRIA2_ENST00000264426	NM_000826	exon11	c.G1558T	p.G520W	AGCCTCGGGATAT	.	67	3	65	0	.	0	T	158257613	G	T	158257613	3	4	19	1	0	0	0	0	1	0	0	0	6809	1116	39	2	1600	2	GRIA2	4	158257613	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5006731	158257613	32896663	54	2528											
DDX60	55601	bcgsc.ca	37	chr4	169169372	169169372	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacgcatccagatagactgaGttttgagcaaaaaccacaga	17	7	8	9	1	0	5	0	2	0	3	1	5	1	5	2	0	3	3	2	0	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	DDX60	NM_017631	exon29	c.C3930A	p.N1310K	GACTGAGTTTTGA	.	41	4	41	0	.	304	T	169169372	T	T	169169372	3	4	19	1	0	0	0	0	1	0	0	0	4401	1020	36	3	1248	3	DDX60	4	169169372	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	10911759	169169372	21984904	55	2529											
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187004484	187004484	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttagcacggctctggaaacaCgcaaaccctggtggtcccat	10	8	10	13	2	1	0	0	0	1	0	2	1	2	1	2	4	3	3	2	4	3	1	rs147873871		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003265	exon4	c.C1644T	p.H548H	GAAACACGCAAAC	.	25	9	42	0	0.000	.	T	187004484	C	T	187004484	2	4	19	1	0	0	0	0	0	0	0	1	16012	535	19	1		1	TLR3	4	187004484	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	17835112	187004484	4149792	56	2530											
PTCD2	79810	broad.mit.edu	37	chr5	71630907	71630907	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ttgatggatatgttatttatCaaaggcaaatataaaagtaa	18	14	7	2	0	1	1	1	1	0	0	1	2	1	2	0	2	0	3	0	2	9	8	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PTCD2	NM_024754	exon5	c.C531G	p.I177M	ATTTATCAAAGGC	.	45	5	46	0	.	31	G	71630907	C	G	71630907	3	3	19	1	0	0	0	0	1	0	0	0	12777	816	29	5	549	5	PTCD2	5	71630907	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		71630907	109284353	57	2531											
CCNH	902	hgsc.bcm.edu	37	chr5	86703897	86703897	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttcatattccagtatctgttCaagtgccttctcctgtccaa	8	16	5	12	0	4	0	2	0	2	0	7	0	6	0	4	0	1	2	4	0	4	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CCNH,NS,carcinoma,0,1	CCNH	NM_001239	exon4	c.G421A	p.E141K	TCTGTTCAAGTGC	.	42	2	49	0	.	0	T	86703897	C	T	86703897	3	4	19	1	0	0	0	0	1	0	0	0	2947	835	29	3	574	3	CCNH	5	86703897	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	15072990	86703897	94211363	58	2532											
LMNB1	4001	hgsc.bcm.edu	37	chr5	126140499	126140499	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggaatctgatcttaatggcGcccagatcaagcttcgagaa	13	9	10	9	2	3	3	1	1	2	2	4	5	3	4	1	2	1	1	1	2	4	2	rs373303194	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	LMNB1,NS,carcinoma,0,1	LMNB1	NM_005573	exon2	c.G391T	p.A131S	AATGGCGCCCAGA	.	27	2	38	0	.	0	T	126140499	G	T	126140499	3	4	19	1	0	0	0	0	1	0	0	0	8890	1087	38	2	397	2	LMNB1	5	126140499	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	39436602	126140499	54774761	59	2533											
CAMLG	819	hgsc.bcm.edu	37	chr5	134074424	134074424	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtcggagaaagctgctcatGaactcggaacagcgcatcaa	13	6	11	11	4	2	2	2	1	0	1	4	4	2	3	0	2	5	3	0	2	4	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CAMLG,colon,carcinoma,0,1	CAMLG	NM_001745	exon1	c.G114T	p.M38I	GCTCATGAACTCG	.	49	2	29	0	.	0	T	134074424	G	T	134074424	3	4	19	1	0	0	0	0	1	0	0	0	2627	1290	45	3	116	3	CAMLG	5	134074424	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7933925	134074424	46840836	60	2534											
PCDHB5	26167	hgsc.bcm.edu	37	chr5	140516886	140516886	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggcgcacaatggcgaggtgCgcaccgccaggctgctgagc	7	4	17	13	4	0	1	0	1	0	0	0	2	0	1	2	4	3	4	2	4	1	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PCDHB5,NS,carcinoma,0,2	PCDHB5	NM_015669	exon1	c.C1870T	p.R624C	GAGGTGCGCACCG	.	65	4	68	0	.	0	T	140516886	C	T	140516886	3	4	19	1	0	0	0	0	1	0	0	0	11592	768	27	1	1872	1	PCDHB5	5	140516886	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	6442462	140516886	40398374	61	2535											
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	154396256	154396256	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggaaagccaaatggcagagaAgcagttagagaaatcagcca	18	4	12	7	0	1	2	1	0	0	2	1	5	1	3	2	2	3	3	2	2	5	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001099293	exon1	c.A2837C	p.K946T	CAGAGAAGCAGTT	.	28	6	32	0	.	.	C	154396256	A	C	154396256	3	2	19	1	0	0	0	0	1	0	0	0	8346	72	3	4	2839	4	KIF4B	5	154396256	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	13879370	154396256	26519004	62	2536											
NPM1	4869	hgsc.bcm.edu	37	chr5	170819801	170819801	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaagcggtctgcccctggagGtggtagcaaggttccacagg	9	7	15	10	1	1	0	0	0	1	0	2	1	2	1	3	6	3	3	3	6	3	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	NPM1_ENST00000393820,NS,carcinoma,0,2	NPM1_ENST00000393820	NM_199185	exon5	c.G440T	p.G147V	CTGGAGGTGGTAG	.	53	3	44	0	.	0	T	170819801	G	T	170819801	3	4	19	1	0	0	0	0	1	0	0	0	10635	1261	44	3	458	3	NPM1	5	170819801	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	16423545	170819801	10095459	63	2537											
NSD1	64324	broad.mit.edu	37	chr5	176721680	176721680	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	acccttgtagctaaagaaaaAgcactgaggcctgtggacca	14	7	10	10	0	0	2	0	1	0	1	0	3	0	3	3	2	2	3	3	2	5	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	NSD1	NM_022455	exon23	c.A7311G	p.K2437K	AGAAAAAGCACTG	.	35	3	30	0	.	416	G	176721680	A	G	176721680	2	3	19	1	0	0	0	0	0	0	0	1	10717	69	3	4		4	NSD1	5	176721680	Silent	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	5901879	176721680	4193580	64	2538											
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	179007944	179007948	+	Splice_Site	DEL	AAAGG	AAAGG	-																															tccttcttatgctccttttaAaaggcatgaaagaattactg																								novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	AAAGG	AAAGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	CTTTTAAAAGGCA	.	108	11	72	0	.	.	-	179007948	AAAGG	-	179007944	8	5	19	1	0	1	0	1	0	0	1	0	13790	29	1	0		0	RUFY1	5	179007944	Splice_Site	DEL	AAAGG	TCGA-W5-AA30-01A-31D-A417-09	2286264	179007944	1907316	65	2539											
ZNF184	7738	broad.mit.edu	37	chr6	27420368	27420368	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gccagtatgaattctctgatGctgaacaagatgggtcctct	10	12	10	9	0	2	4	0	3	2	1	4	4	3	4	2	1	2	2	2	1	4	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ZNF184	NM_007149	exon6	c.C970A	p.H324N	TCTGATGCTGAAC	.	52	4	47	0	.	89	T	27420368	G	T	27420368	3	4	19	1	0	0	0	0	1	0	0	0	17809	1319	46	3	1289	3	ZNF184	6	27420368	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		27420368	143694699	66	2540											
TRERF1	55809	hgsc.bcm.edu	37	chr6	42196196	42196196	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	caactgctggacgacgtcgtCgtcgaggatgtccacatcct	8	9	11	13	5	0	0	0	0	0	0	5	4	2	2	2	2	2	1	2	2	1	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	TRERF1,colon,carcinoma,+1,2	TRERF1	NM_033502	exon18	c.G3490A	p.D1164N	CGTCGTCGTCGAG	.	30	3	18	0	.	+1	T	42196196	C	T	42196196	3	4	19	1	0	0	0	0	1	0	0	0	16536	884	31	1	116	1	TRERF1	6	42196196	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	14775828	42196196	128918871	67	2541											
HIVEP2	3097	hgsc.bcm.edu	37	chr6	143091902	143091902	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgggagggactgcaaaGacccagcatttgccgaggca	10	7	13	11	1	0	1	0	0	0	1	1	4	1	3	3	3	3	3	3	3	1	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HIVEP2,NS,carcinoma,0,1	HIVEP2	NM_006734	exon5	c.C3974A	p.S1325Y	TGCAAAGACCCAG	.	12	2	24	0	.	0	T	143091902	G	T	143091902	3	4	19	1	0	0	0	0	1	0	0	0	7228	942	33	3	3390	3	HIVEP2	6	143091902	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	100895706	143091902	28023165	68	2542											
OPRM1	4988	bcgsc.ca	37	chr6	154360621	154360621	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggctgaggcgcttggaacccGaaaagtctcggtgctcctgg	7	8	15	11	3	1	1	0	1	1	0	3	3	2	2	2	5	2	3	2	5	3	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	OPRM1	NM_001145279	exon3	c.G221A	p.R74Q	GAACCCGAAAAGT	.	53	4	39	0	.	241	A	154360621	A	A	154360621	3	1	19	1	0	0	0	0	1	0	0	0	10935	1058	37	1	278	1	OPRM1	6	154360621	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	11268719	154360621	16754446	69	2543											
SDK1	221935	hgsc.bcm.edu	37	chr7	3678685	3678685	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgctgggttttaccgctgcGtggtgcgaaacagaatggga	9	10	15	7	3	0	1	0	0	0	1	0	3	0	2	1	3	5	3	1	3	3	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	SDK1,colon,carcinoma,0,1	SDK1	NM_152744	exon3	c.G508A	p.V170M	CGCTGCGTGGTGC	.	35	2	28	0	.	0	A	3678685	G	A	3678685	3	1	19	1	0	0	0	0	1	0	0	0	14022	1145	40	1	518	1	SDK1	7	3678685	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		3678685	155459978	70	2544											
FERD3L	222894	hgsc.bcm.edu	37	chr7	19184746	19184746	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagacacctcttccgcgctcCtcttcctcctcctcttctcc	3	13	4	21	2	4	1	0	0	4	1	10	2	9	1	7	0	0	1	7	0	0	3	rs199985178		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,2	.	NM_152898	exon1	c.G240A	p.E80E	GCGCTCCTCTTCC	.	17	0	14	1	.	63	T	19184746	C	T	19184746	2	4	19	1	0	0	0	0	0	0	0	1	5849	680	24	3		3	FERD3L	7	19184746	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	15506061	19184746	139953917	71	2545											
GTF2I	2969	broad.mit.edu	37	chr7	74148279	74148279	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttcagacatgagcttctgaAttcaacacgtgaagatttac	13	13	7	8	1	3	5	2	3	1	2	3	5	3	5	0	0	3	1	0	0	4	5	rs1135649		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	GTF2I,NS,carcinoma,0,7	GTF2I	NM_032999	exon16	c.A1319G	p.N440S	TTCTGAATTCAAC	.	258	5	259	1	.	40	G	74148279	A	G	74148279	3	3	19	1	0	0	0	0	1	0	0	0	6908	101	4	4	1377	4	GTF2I	7	74148279	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	54963533	74148279	84990384	72	2546											
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	97852437	97852437	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacacgtccctgagggcgatGgggggcacctccagccaggg	7	4	17	13	2	0	1	0	1	0	0	2	3	2	1	4	5	1	1	4	5	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,1	.	NM_015395	exon21	c.C2793G	p.P931P	GGCGATGGGGGGC	.	31	13	25	0	.	77	C	97852437	G	C	97852437	2	2	19	1	0	0	0	0	0	0	0	1	15802	1335	47	5		5	TECPR1	7	97852437	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	23704158	97852437	61286226	73	2547											
RELN	5649	hgsc.bcm.edu	37	chr7	103124180	103124180	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgacatgccaggtgatcccGttgttgacgctgtattgcag	8	12	12	9	2	0	3	0	3	0	0	1	3	1	3	2	1	2	5	2	1	1	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	RELN,NS,carcinoma,0,1	RELN	NM_173054	exon62	c.C10101T	p.N3367N	GATCCCGTTGTTG	.	28	2	28	1	.	0	A	103124180	G	A	103124180	2	1	19	1	0	0	0	0	0	0	0	1	13272	1136	40	1		1	RELN	7	103124180	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5271743	103124180	56014483	74	2548											
CLEC2L	154790	hgsc.bcm.edu	37	chr7	139225079	139225079	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcagcttccaagggctGcatcaagtgcgaagcgccct	8	7	11	15	2	1	0	1	0	0	0	2	1	2	0	3	1	5	4	3	1	3	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001080511	exon3	c.G278A	p.C93Y	AGGGCTGCATCAA	.	66	4	34	0	.	.	A	139225079	G	A	139225079	3	1	19	1	0	0	0	0	1	0	0	0	3532	1319	46	3	288	3	CLEC2L	7	139225079	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	36100899	139225079	19913584	75	2549											
MLL3	58508	hgsc.bcm.edu	37	chr7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caatacctatcacattgtctAcattgcagaataagatcttc	14	13	4	10	0	3	2	1	0	2	2	4	2	3	2	1	0	3	1	1	0	6	7	rs4024337		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	74	3	93	1	.	0	T	151921114	A	T	151921114	4	4	19	1	0	0	0	0	0	1	0	0	9670	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	12696035	151921114	7217549	76	2550											
ACTR3B	57180	ucsc.edu	37	chr7	152497656	152497656	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaggtagttgaccaagcTcaaaggagagtgttgagggg	13	7	16	5	0	1	3	1	2	0	1	1	4	1	3	1	4	1	5	1	4	4	3	rs2462099		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ACTR3B,NS,carcinoma,+1,1	ACTR3B	NM_020445	exon3	c.T141C	p.A47A	CCAAGCTCAAAGG	.	68	10	57	1	.	50	C	152497656	T	C	152497656	2	2	19	1	0	0	0	0	0	0	0	1	213	1538	54	4		4	ACTR3B	7	152497656	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	576542	152497656	6641007	77	2551											
CSMD1	64478	hgsc.bcm.edu	37	chr8	3265726	3265726	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaataatcccagatgatgccGtaaagttgaagaaacatgaa	18	8	9	6	1	0	5	0	3	0	2	1	6	1	5	2	0	2	2	2	0	7	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1_ENST00000537824	NM_033225	exon14	c.C1766A	p.T589K	GATGCCGTAAAGT	.	35	2	43	0	.	0	T	3265726	G	T	3265726	3	4	19	1	0	0	0	0	1	0	0	0	3969	1145	40	2	9156	2	CSMD1	8	3265726	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		3265726	143098296	78	2552											
PRKDC	5591	hgsc.bcm.edu	37	chr8	48842481	48842481	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagaaaccactgatgaGgggcaaccttgtagattgca	12	11	11	7	0	0	4	0	2	0	2	0	4	0	4	2	2	3	4	2	2	4	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	p.L662I	.	.	TGATGAGGGGCAA	.	67	3	74	0	.	.	T	48842481	G	T	48842481	3	4	19	1	0	0	0	0	1	0	0	0	12573	1000	35	3	10677	3	PRKDC	8	48842481	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	45576755	48842481	97521541	79	2553											
BAI1	575	hgsc.bcm.edu;bcgsc.ca	37	chr8	143558848	143558848	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctgcaggcccccccagtttgGgggcaacccctgtgagggcc	5	6	14	16	0	0	1	0	1	0	0	0	1	0	1	6	4	2	3	6	4	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001702	exon5	c.G1325T	p.G442V	AGTTTGGGGGCAA	.	50	4	37	0	.	.	T	143558848	G	T	143558848	3	4	19	1	0	0	0	0	1	0	0	0	1296	1232	43	3	1343	3	BAI1	8	143558848	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	94716367	143558848	2805174	80	2554											
DOCK8	81704	hgsc.bcm.edu	37	chr9	428485	428485	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gctttgcaacactccgtgctCtcatcgccaaggtaaacttg	9	11	8	13	2	1	0	1	0	1	0	4	0	2	0	2	1	4	4	2	1	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DOCK8_ENST00000453981,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2	DOCK8_ENST00000453981	NM_203447	exon35	c.C4462G	p.L1488V	CGTGCTCTCATCG	.	12	2	19	0	.	0	G	428485	C	G	428485	3	3	19	1	0	0	0	0	1	0	0	0	4720	913	32	5	4600	5	DOCK8	9	428485	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		428485	140784946	81	2555											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	90254352	90254352	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggttggcccataaaattgaCtttggaaatgaatttaaaaa	16	12	9	4	0	0	2	0	2	0	0	0	3	0	3	1	3	0	1	1	3	7	6	rs369801129		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_004938	exon5	c.C507G	p.D169E	AATTGACTTTGGA	.	61	9	62	0	.	.	G	90254352	C	G	90254352	3	3	19	1	0	0	0	0	1	0	0	0	4259	564	20	5	521	5	DAPK1	9	90254352	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	89825867	90254352	50959079	82	2556											
WNK2	65268	hgsc.bcm.edu;bcgsc.ca	37	chr9	96070761	96070761	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtggacgagcaagacggtGggggccgcgcagctgaagcc	9	3	19	10	4	0	2	0	1	0	1	0	5	0	3	2	4	3	3	2	4	2	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006648	exon27	c.G6411T	p.V2137V	GACGGTGGGGGCC	.	31	4	28	0	.	.	T	96070761	G	T	96070761	2	4	19	1	0	0	0	0	0	0	0	1	17438	1335	47	3		3	WNK2	9	96070761	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5816409	96070761	45142670	83	2557											
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61900193	61900193	+	Translation_Start_Site	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccttaagcagtgatttagAatcaacctccaaaacagctc	14	11	5	11	0	1	2	1	1	0	1	4	2	3	2	3	0	4	2	3	0	6	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ANK3	.	.	.	.	ATTTAGAATCAAC	.	34	4	38	0	.	703	C	61900193	A	C	61900193	1	2	19	1	0	0	0	0	0	0	0	0	618	261	9	4		4	ANK3	10	61900193	Translation_Start_Site	SNP	A	TCGA-W5-AA30-01A-31D-A417-09		61900193	73634554	84	2558											
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	97106174	97106174	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcacttactttagtgtctgAgctttaaagtcaaatttggc	10	15	9	7	0	2	1	1	1	1	0	2	1	2	1	0	2	2	2	0	2	5	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001034955	exon24	c.T2484G	p.A828A	TGTCTGAGCTTTA	.	39	14	31	0	.	.	C	97106174	A	C	97106174	2	2	19	1	0	0	0	0	0	0	0	1	14981	291	11	4		4	SORBS1	10	97106174	Silent	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	35205981	97106174	38428573	85	2559											
TM9SF3	56889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	98292847	98292847	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacgaggcacagcattgacaCgacaaggaaagttgggctga	14	5	14	8	2	0	2	0	2	0	0	0	6	0	3	0	3	1	4	0	3	2	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020123	exon10	c.G1286A	p.R429H	TTGACACGACAAG	.	81	20	73	0	.	.	T	98292847	C	T	98292847	3	4	19	1	0	0	0	0	1	0	0	0	16039	536	19	1	507	1	TM9SF3	10	98292847	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	1186673	98292847	37241900	86	2560											
WDR11	55717	hgsc.bcm.edu	37	chr10	122661797	122661797	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaactgttgcttgatccaGaattcactctcttgcagagg	11	12	9	9	0	2	4	1	1	1	3	4	4	3	4	1	1	3	3	1	1	2	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	WDR11,NS,carcinoma,0,1	WDR11	NM_018117	exon22	c.G2716T	p.E906X	GATCCAGAATTCA	.	59	3	79	1	.	0	T	122661797	G	T	122661797	4	4	19	1	0	0	0	0	0	1	0	0	17333	943	33	3	2802	3	WDR11	10	122661797	Nonsense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	24368950	122661797	12872950	87	2561											
PTPRE	5791	hgsc.bcm.edu	37	chr10	129875976	129875976	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccgccgagggcaaaggcatGattgacctcatcgcagccgt	9	6	12	14	4	1	2	1	2	0	0	2	3	1	2	4	2	1	3	4	2	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006504	exon19	c.G1821T	p.M607I	AGGCATGATTGAC	.	46	3	64	0	.	.	T	129875976	G	T	129875976	3	4	19	1	0	0	0	0	1	0	0	0	12852	1290	45	3	1926	3	PTPRE	10	129875976	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7214179	129875976	5658771	88	2562											
OR52E8	390079	hgsc.bcm.edu	37	chr11	5878458	5878458	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaacaaccatgtacaGgctcctcaggacagcaatgc	13	6	10	12	0	1	0	1	0	0	0	2	2	2	2	2	3	5	3	2	3	4	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	39	2	28	1	.	0	A	5878458	G	A	5878458	2	1	19	1	0	0	0	0	0	0	0	1	11166	991	35	3		3	OR52E8	11	5878458	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		5878458	129128058	89	2563											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6647166	6647166	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccgtgtttcagcccagAtctcacggtccaggatggct	7	10	10	14	2	3	1	3	0	1	1	5	2	4	2	3	3	1	2	3	3	0	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003737	exon17	c.T6716A	p.I2239N	GCCCAGATCTCAC	.	38	9	27	0	.	.	T	6647166	A	T	6647166	3	4	19	1	0	0	0	0	1	0	0	0	4310	333	12	5	3200	5	DCHS1	11	6647166	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	768708	6647166	128359350	90	2564											
CAPRIN1	4076	broad.mit.edu	37	chr11	34101180	34101180	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgttctttttcttagataaaGttctaaaggaaattgttgag	12	18	8	3	0	3	2	0	1	3	1	3	3	3	3	0	1	0	3	0	1	6	9	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CAPRIN1	NM_203364	exon7	c.G694C	p.V232L	GATAAAGTTCTAA	.	40	3	35	0	.	110	C	34101180	G	C	34101180	3	2	19	1	0	0	0	0	1	0	0	0	2653	1029	36	5	716	5	CAPRIN1	11	34101180	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	27454014	34101180	100905336	91	2565											
CAPRIN1	4076	broad.mit.edu	37	chr11	34110974	34110974	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctagacttgctcagcctaatCaagttcctgtacaaccagaa	13	10	6	12	0	2	2	2	0	0	2	3	2	3	2	3	0	4	3	3	0	6	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CAPRIN1	NM_203364	exon12	c.C1264A	p.Q422K	CCTAATCAAGTTC	.	44	3	44	0	.	110	A	34110974	C	A	34110974	3	1	19	1	0	0	0	0	1	0	0	0	2653	827	29	3	1306	3	CAPRIN1	11	34110974	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	9794	34110974	100895542	92	2566											
PCNXL3	399909	hgsc.bcm.edu	37	chr11	65402529	65402529	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgacgagtgggtctttgccGacatggacctgcttcaccgc	6	10	13	12	3	2	1	1	1	1	0	2	4	2	2	3	2	2	1	3	2	0	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PCNXL3_ENST00000355703,NS,carcinoma,0,1	PCNXL3_ENST00000355703	NM_032223	exon30	c.G4891T	p.D1631Y	TTTGCCGACATGG	.	13	2	28	0	.	0	T	65402529	G	T	65402529	3	4	19	1	0	0	0	0	1	0	0	0	11640	1058	37	2	5009	2	PCNXL3	11	65402529	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	31291555	65402529	69603987	93	2567											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	66463945	66463945	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtcccagcgcctgtgcaGgtctctcagcttctccgaca	5	10	9	17	3	3	0	1	0	2	0	7	1	4	0	3	1	3	2	3	1	0	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006946	exon20	c.C4081T	p.L1361L	TGTGCAGGTCTCT	.	18	9	17	0	.	.	A	66463945	G	A	66463945	2	1	19	1	0	0	0	0	0	0	0	1	15176	991	35	3		3	SPTBN2	11	66463945	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	1061416	66463945	68542571	94	2568											
ADRBK1	156	hgsc.bcm.edu	37	chr11	67049787	67049787	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atggccacgtgcggatctcgGacctgggcctggcctgtgac	5	8	15	13	3	1	1	0	1	1	0	2	3	1	3	4	5	1	0	4	5	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001619	exon12	c.G1003T	p.D335Y	ATCTCGGACCTGG	.	71	4	57	0	.	.	T	67049787	G	T	67049787	3	4	19	1	0	0	0	0	1	0	0	0	342	1174	41	3	1049	3	ADRBK1	11	67049787	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	585842	67049787	67956729	95	2569											
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	67051372	67051372	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggtgaacgcggccgaCgccttcgacattggctcctt	6	8	15	12	5	0	1	0	1	0	0	2	4	1	2	3	5	1	1	3	5	1	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ADRBK1,NS,carcinoma,0,1	ADRBK1	NM_001619	exon17	c.C1443T	p.D481D	GGCCGACGCCTTC	.	36	4	15	0	.	0	T	67051372	C	T	67051372	2	4	19	1	0	0	0	0	0	0	0	1	342	535	19	1		1	ADRBK1	11	67051372	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	1585	67051372	67955144	96	2570											
CNTN5	53942	hgsc.bcm.edu	37	chr11	100095501	100095501	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tatggctgcagggtacagacCacagcagacagtgtgtcaga	12	7	13	9	0	1	3	1	0	0	3	1	3	1	3	1	2	3	4	1	2	2	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CNTN5_ENST00000524871,NS,carcinoma,0,2	CNTN5_ENST00000524871	NM_001243270	exon15	c.C1962A	p.T654T	ACAGACCACAGCA	.	20	2	18	0	.	0	A	100095501	C	A	100095501	2	1	19	1	0	0	0	0	0	0	0	1	3667	581	21	3		3	CNTN5	11	100095501	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	33044129	100095501	34911015	97	2571											
BIRC2	329	hgsc.bcm.edu	37	chr11	102221671	102221671	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agaacatgccaagtggtttcCaaggtaattgttttgaaaaa	15	12	9	5	0	0	2	0	1	0	1	1	2	1	2	2	2	2	3	2	2	6	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BIRC2,NS,carcinoma,0,1	BIRC2	NM_001256163	exon3	c.C992A	p.P331Q	GGTTTCCAAGGTA	.	50	2	60	0	.	0	A	102221671	C	A	102221671	3	1	19	1	0	0	0	0	1	0	0	0	1434	594	21	3	998	3	BIRC2	11	102221671	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	2126170	102221671	32784845	98	2572											
OR8B8	26493	hgsc.bcm.edu	37	chr11	124310958	124310958	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	gcgaggataaactgtgtcacGaaggaggaattctcagcagc	13	7	13	8	2	2	0	2	0	1	0	3	5	2	3	0	3	3	1	0	3	4	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR8B8,NS,chondrosarcoma,0,1	OR8B8	NM_012378	exon1	c.C24G	p.F8L	TGTCACGAAGGAG	.	16	2	27	0	.	0	C	124310958	G	C	124310958	3	2	19	1	0	0	0	0	1	0	0	0	11277	1049	37	5	914	5	OR8B8	11	124310958	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	22089287	124310958	10695558	99	2573											
CHEK1	1111	bcgsc.ca	37	chr11	125514458	125514458	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cacgattctttaccaaattgGatgcagacaaatcttatcaa	15	12	5	9	1	3	1	1	0	2	1	3	3	3	2	1	1	2	1	1	1	5	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CHEK1	NM_001244846	exon11	c.G1153T	p.D385Y	AAATTGGATGCAG	.	55	4	60	0	.	44	T	125514458	T	T	125514458	3	4	19	1	0	0	0	0	1	0	0	0	3356	1174	41	3	1191	3	CHEK1	11	125514458	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	1203500	125514458	9492058	100	2574											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	665927	665927	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctggtctgggacccacacAaccgtaggagacaggtcctg	9	6	13	13	1	1	1	0	0	1	1	2	3	2	2	4	4	1	1	4	4	2	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_173593	exon15	c.A2275G	p.N759D	CCACACAACCGTA	.	41	10	48	0	.	.	G	665927	A	G	665927	3	3	19	1	0	0	0	0	1	0	0	0	1266	130	5	4	2333	4	B4GALNT3	12	665927	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09		665927	133185968	101	2575											
SYT10	341359	hgsc.bcm.edu;bcgsc.ca	37	chr12	33579333	33579333	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtcacaggtttgcttttccaGcatggccaacacagcttcca	9	11	8	13	0	1	0	1	0	0	0	3	0	3	0	3	2	4	4	3	2	1	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198992	exon2	c.C249T	p.C83C	TTTCCAGCATGGC	.	56	4	52	0	.	.	A	33579333	G	A	33579333	2	1	19	1	0	0	0	0	0	0	0	1	15523	963	34	3		3	SYT10	12	33579333	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	32913406	33579333	100272562	102	2576											
SRGAP1	57522	hgsc.bcm.edu	37	chr12	64505698	64505698	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atcatcatccaccatgagacTattttcccagatgctaaaga	14	11	5	11	0	2	3	2	1	0	3	4	4	4	3	3	0	1	1	3	0	3	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020762	exon17	c.T2076C	p.T692T	TGAGACTATTTTC	.	39	3	52	0	.	.	C	64505698	T	C	64505698	2	2	19	1	0	0	0	0	0	0	0	1	15201	1509	53	4		4	SRGAP1	12	64505698	Silent	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	30926365	64505698	69346197	103	2577											
EEA1	8411	hgsc.bcm.edu	37	chr12	93226362	93226362	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ttgttgtagctgcttaaactCcgcctttagatgctggtact	7	16	9	9	1	0	1	0	0	0	1	1	1	1	1	2	1	5	6	2	1	5	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003566	exon11	c.G1180T	p.E394X	TAAACTCCGCCTT	.	80	4	81	0	.	.	A	93226362	C	A	93226362	4	1	19	1	0	0	0	0	0	1	0	0	4947	864	30	3	3131	3	EEA1	12	93226362	Nonsense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	28720664	93226362	40625533	104	2578											
MYBPC1	4604	hgsc.bcm.edu	37	chr12	102061631	102061631	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gttaatgcagctggtgccagCgagcccaagtactattctca	10	10	10	11	1	1	0	1	0	1	0	2	1	1	0	2	1	6	4	2	1	4	4	rs371105415		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MYBPC1_ENST00000360610,NS,adenocarcinoma,0,2	MYBPC1_ENST00000360610	NM_206819	exon23	c.C2478T	p.S826S	TGCCAGCGAGCCC	.	48	3	63	0	.	0	T	102061631	C	T	102061631	2	4	19	1	0	0	0	0	0	0	0	1	10059	767	27	1		1	MYBPC1	12	102061631	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	8835269	102061631	31790264	105	2579											
NT5DC3	51559	hgsc.bcm.edu	37	chr12	104171793	104171793	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacaggcgccttaggaagtaGgttgggttctggtctgtgcg	6	11	17	7	2	2	0	0	0	2	0	2	2	2	1	1	5	1	3	1	5	3	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001031701	exon14	c.C1461A	p.T487T	GAAGTAGGTTGGG	.	56	4	47	0	.	.	T	104171793	G	T	104171793	2	4	19	1	0	0	0	0	0	0	0	1	10740	987	35	3		3	NT5DC3	12	104171793	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	2110162	104171793	29680102	106	2580											
CCDC62	84660	hgsc.bcm.edu	37	chr12	123262119	123262119	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tcattggagaattaaaagatCgagataaagagctcaatgac	18	9	9	5	1	2	5	2	1	0	4	3	7	2	5	0	1	1	1	0	1	6	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CCDC62_ENST00000253079,NS,carcinoma,0,2	CCDC62_ENST00000253079	NM_201435	exon2	c.C118T	p.R40X	AAAGATCGAGATA	.	28	2	31	0	.	0	T	123262119	C	T	123262119	4	4	19	1	0	0	0	0	0	1	0	0	2853	876	31	1	124	1	CCDC62	12	123262119	Nonsense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	19090326	123262119	10589776	107	2581											
FZD10	11211	ucsc.edu	37	chr12	130648884	130648884	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgctacttttacgaacGcctcaacatggattactgga	10	11	8	12	3	1	0	1	0	0	0	1	3	1	2	2	2	6	1	2	2	5	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	FZD10	NM_007197	exon1	c.G1397A	p.R466H	ACGAACGCCTCAA	.	33	4	27	0	.	95	A	130648884	G	A	130648884	3	1	19	1	0	0	0	0	1	0	0	0	6164	1087	38	1	1399	1	FZD10	12	130648884	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7386765	130648884	3203011	108	2582											
PSPC1	55269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	20277436	20277436	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtgcttgaggggtttcagaaCctgttctactccccataggt	7	13	11	10	0	2	2	1	1	1	1	3	2	3	2	3	3	3	3	3	3	3	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001042414	exon10	c.G1451A	p.G484D	TCAGAACCTGTTC	.	120	18	151	0	.	.	T	20277436	C	T	20277436	3	4	19	1	0	0	0	0	1	0	0	0	12765	507	18	3	124	3	PSPC1	13	20277436	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		20277436	94892442	109	2583											
PABPC3	5042	hgsc.bcm.edu	37	chr13	25671267	25671267	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtattgatgatgaacgtctcCggaaagcgttttctccattt	9	15	9	8	3	2	3	0	3	2	0	4	4	2	4	2	1	2	2	2	1	3	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PABPC3,NS,carcinoma,0,1	PABPC3	NM_030979	exon1	c.C931T	p.R311W	CGTCTCCGGAAAG	.	37	2	65	0	.	0	T	25671267	C	T	25671267	3	4	19	1	0	0	0	0	1	0	0	0	11412	643	23	1	933	1	PABPC3	13	25671267	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	5393831	25671267	89498611	110	2584											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32913032	32913032	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agggacaacccgaacgtgatGaaaagatcaaagaacctact	18	5	9	9	2	1	4	1	2	0	2	1	6	1	5	2	1	4	0	2	1	7	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BRCA2,NS,carcinoma,0,1	BRCA2	NM_000059	exon11	c.G4540C	p.E1514Q	CGTGATGAAAAGA	.	32	5	58	0	.	0	C	32913032	G	C	32913032	3	2	19	1	0	0	0	0	1	0	0	0	1501	1291	45	5	4578	5	BRCA2	13	32913032	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7241765	32913032	82256846	111	2585											
THTPA	79178	hgsc.bcm.edu	37	chr14	24025980	24025980	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtagcatggcccagggctTgattgaggtggagcgaaagt	10	8	17	6	1	0	2	0	2	0	0	0	4	0	3	1	5	2	3	1	5	2	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	THTPA,NS,carcinoma,0,1	THTPA	NM_001256321	exon2	c.T14C	p.L5S	AGGGCTTGATTGA	.	10	2	9	1	.	0	C	24025980	T	C	24025980	3	2	19	1	0	0	0	0	1	0	0	0	15941	1821	63	4	16	4	THTPA	14	24025980	Missense_Mutation	SNP	T	TCGA-W5-AA30-01A-31D-A417-09		24025980	83323560	112	2586											
KTN1	3895	hgsc.bcm.edu	37	chr14	56079169	56079169	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggtcatcaaagaaagtgacGcatcaaagattcctggcaaa	17	7	9	8	1	3	3	3	1	0	2	4	3	4	3	1	2	0	2	1	2	4	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	KTN1_ENST00000416613,colon,carcinoma,0,1	KTN1_ENST00000416613	NM_004986	exon2	c.G403T	p.A135S	AGTGACGCATCAA	.	95	4	89	0	.	0	T	56079169	G	T	56079169	3	4	19	1	0	0	0	0	1	0	0	0	8624	1087	38	2	405	2	KTN1	14	56079169	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	32053189	56079169	51270371	113	2587											
ANGEL1	23357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	77274347	77274347	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtctggatggcaatgtagaTagagctctgagctctgctgc	8	12	13	8	0	3	3	0	1	3	2	3	4	3	4	0	2	4	5	0	2	3	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015305	exon3	c.A794G	p.Y265C	TGTAGATAGAGCT	.	23	5	32	0	.	.	C	77274347	T	C	77274347	3	2	19	1	0	0	0	0	1	0	0	0	604	1406	49	4	1250	4	ANGEL1	14	77274347	Missense_Mutation	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	21195178	77274347	30075193	114	2588											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	89124692	89124692	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agcgaacatttgtgacatgtGtactatgggccacatacctc	11	11	9	10	1	0	1	0	1	0	0	1	2	0	1	2	1	4	1	2	1	4	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_183387	exon26	c.C3716T	p.T1239I	ACATGTGTACTAT	.	71	14	60	0	.	.	A	89124692	G	A	89124692	3	1	19	1	0	0	0	0	1	0	0	0	5128	1377	48	3	2289	3	EML5	14	89124692	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	11850345	89124692	18224848	115	2589											
BRF1	2972	broad.mit.edu;bcgsc.ca	37	chr14	105722744	105722744	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	actgggcaggcagcacagacCggccactgagatgcgtggag	10	4	16	11	2	0	2	0	1	0	2	0	4	0	3	2	4	2	3	2	4	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	BRF1	NM_001242790	exon4	c.G582A	p.P194P	ACAGACCGGCCAC	.	54	5	50	0	.	102	T	105722744	C	T	105722744	2	4	19	1	0	0	0	0	0	0	0	1	1512	667	23	1		1	BRF1	14	105722744	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	16598052	105722744	1626796	116	2590											
RYR3	6263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	33923462	33923462	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catgttaacccagctgctgaGgaggatctcaagaaggtcaa	13	8	11	9	0	2	2	2	1	1	1	3	4	2	4	1	3	3	3	1	3	4	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001243996	exon23	c.G2835T	p.E945D	TGCTGAGGAGGAT	.	35	4	27	0	.	.	T	33923462	G	T	33923462	3	4	19	1	0	0	0	0	1	0	0	0	13822	991	35	3	2925	3	RYR3	15	33923462	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		33923462	68607930	117	2591											
ACTC1	70	ucsc.edu	37	chr15	35084309	35084309	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	accaatgaaggagggctggaAgagtgtctcaggacagcgga	13	5	16	7	1	1	2	1	1	1	1	2	6	1	6	1	5	1	1	1	5	3	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ACTC1	NM_005159	exon5	c.T790C	p.F264L	GCTGGAAGAGTGT	.	32	4	23	0	.	75	G	35084309	A	G	35084309	3	3	19	1	0	0	0	0	1	0	0	0	195	72	3	4	355	4	ACTC1	15	35084309	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	1160847	35084309	67447083	118	2592											
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	42276152	42276152	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cacctggccctgctccagctCctcagggcttcgctctacac	5	9	8	19	1	2	0	1	0	1	0	5	0	4	0	4	2	3	4	4	2	1	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001206670	exon20	c.G2407A	p.E803K	CCAGCTCCTCAGG	.	21	6	14	0	.	.	T	42276152	C	T	42276152	3	4	19	1	0	0	0	0	1	0	0	0	12053	864	30	3	203	3	PLA2G4E	15	42276152	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	7191843	42276152	60255240	119	2593											
VPS39	23339	hgsc.bcm.edu	37	chr15	42465949	42465949	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtttagcaaagacctgcatGgactcatcaaaacgcttctg	13	10	8	10	1	3	1	2	0	1	1	3	2	3	2	1	1	3	4	1	1	4	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	VPS39,NS,carcinoma,0,2	VPS39	NM_015289	exon11	c.C1062A	p.S354S	CTGCATGGACTCA	.	21	2	35	0	.	0	T	42465949	G	T	42465949	2	4	19	1	0	0	0	0	0	0	0	1	17269	1335	47	3		3	VPS39	15	42465949	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	189797	42465949	60065443	120	2594											
DMXL2	23312	hgsc.bcm.edu	37	chr15	51780309	51780309	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcattttttcatcatGctgtgacctggggaccgagc	6	15	11	9	1	3	1	3	1	0	0	3	3	3	2	2	2	2	2	2	2	0	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001174116	exon22	c.C5059A	p.H1687N	CATCATGCTGTGA	.	65	4	59	0	.	.	T	51780309	G	T	51780309	3	4	19	1	0	0	0	0	1	0	0	0	4623	1319	46	3	4142	3	DMXL2	15	51780309	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	9314360	51780309	50751083	121	2595											
LRRK1	79705	hgsc.bcm.edu	37	chr15	101566296	101566296	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cactctgccgctccccctccGgctccagggccacaggcttc	4	7	9	21	2	1	0	0	0	1	0	5	0	4	0	6	3	1	3	6	3	0	1	rs367783860	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	LRRK1_ENST00000388948,NS,carcinoma,0,2	LRRK1_ENST00000388948	NM_024652	exon17	c.G2359T	p.G787C	CCCTCCGGCTCCA	.	46	2	23	0	.	0	T	101566296	G	T	101566296	3	4	19	1	0	0	0	0	1	0	0	0	9077	1116	39	2	2421	2	LRRK1	15	101566296	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	49785987	101566296	965096	122	2596											
ABCC11	85320	hgsc.bcm.edu	37	chr16	48249190	48249190	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agaacttcactggtcacacgGatgcgctggtcgctgacctc	8	9	11	13	3	2	2	2	1	0	1	4	3	2	3	1	3	2	2	1	3	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ABCC11,right_upper_lobe,carcinoma,0,1	ABCC11	NM_033151	exon7	c.C1017A	p.I339I	CACACGGATGCGC	.	23	2	24	0	.	0	T	48249190	G	T	48249190	2	4	19	1	0	0	0	0	0	0	0	1	51	1164	41	3		3	ABCC11	16	48249190	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		48249190	42105563	123	2597											
CFDP1	10428	hgsc.bcm.edu	37	chr16	75339062	75339062	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccccaaaaggctgctcatGccacttgatctttttaacct	9	14	5	13	0	2	1	1	1	1	0	3	1	3	1	4	1	3	2	4	1	3	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CFDP1,NS,carcinoma,0,1	CFDP1	NM_006324	exon6	c.C669A	p.G223G	GCTCATGCCACTT	.	18	2	23	0	.	0	T	75339062	G	T	75339062	2	4	19	1	0	0	0	0	0	0	0	1	3304	1306	46	3		3	CFDP1	16	75339062	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	27089872	75339062	15015691	124	2598											
SPATA22	84690	hgsc.bcm.edu	37	chr17	3370841	3370841	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgattgaacaacggaacaggCaaacagcctaaattgaatgt	17	8	9	7	1	0	3	0	3	0	0	0	4	0	4	1	2	5	1	1	2	7	3	rs80115425	bycluster;alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032598	exon3	c.G51A	p.L17L	AACAGGCAAACAG	.	95	4	89	0	.	.	T	3370841	C	T	3370841	2	4	19	1	0	0	0	0	0	0	0	1	15064	709	25	3		3	SPATA22	17	3370841	Silent	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		3370841	77824369	125	2599											
MYH2	4620	hgsc.bcm.edu	37	chr17	10426863	10426863	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cccacccttcagggccagctGctcagcctcatccagacgga	8	6	9	18	1	3	1	3	0	0	1	4	2	4	2	5	2	3	2	5	2	0	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_017534	exon37	c.C5422A	p.Q1808K	CCAGCTGCTCAGC	.	46	4	50	0	.	.	T	10426863	G	T	10426863	3	4	19	1	0	0	0	0	1	0	0	0	10083	1328	46	3	419	3	MYH2	17	10426863	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7056022	10426863	70768347	126	2600											
EPN2	22905	hgsc.bcm.edu	37	chr17	19232056	19232056	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctgcctccattgacccatggGgggtgcccactggagccacc	6	7	12	16	0	0	1	0	1	0	0	1	2	1	2	6	4	3	0	6	4	0	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	EPN2,NS,carcinoma,0,1	EPN2	NM_014964	exon8	c.G1180T	p.G394W	CCATGGGGGGTGC	.	67	3	41	0	.	0	T	19232056	G	T	19232056	3	4	19	1	0	0	0	0	1	0	0	0	5214	1232	43	3	1202	3	EPN2	17	19232056	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	8805193	19232056	61963154	127	2601											
DHRS13	147015	hgsc.bcm.edu	37	chr17	27228176	27228176	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagacgtccccgacagtgggCagctgaggctaccaccacca	11	4	11	15	2	0	2	0	1	0	1	1	3	1	2	5	2	2	3	5	2	2	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DHRS13,NS,carcinoma,0,1	DHRS13	NM_144683	exon4	c.G514A	p.A172T	AGTGGGCAGCTGA	.	29	2	32	0	.	0	T	27228176	C	T	27228176	3	4	19	1	0	0	0	0	1	0	0	0	4517	710	25	3	627	3	DHRS13	17	27228176	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	7996120	27228176	53967034	128	2602											
GJC1	10052	bcgsc.ca	37	chr17	42882468	42882468	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gttaagcaagaggcaaaggcCtgtaacaccatacattatca	16	8	8	9	0	1	1	1	0	0	1	1	1	1	1	2	2	3	4	2	2	6	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	GJC1	NM_005497	exon3	c.G718A	p.G240S	AAAGGCCTGTAAC	.	21	3	22	0	.	45	T	42882468	T	T	42882468	3	4	19	1	0	0	0	0	1	0	0	0	6456	681	24	3	476	3	GJC1	17	42882468	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	15654292	42882468	38312742	129	2603											
OR4D2	124538	hgsc.bcm.edu	37	chr17	56247070	56247070	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcttcctggggctctcGcagactcgggagctccagcg	4	11	13	13	3	2	1	0	0	2	1	6	2	4	2	2	3	2	3	2	3	0	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR4D2,NS,carcinoma,0,1	OR4D2	NM_001004707	exon1	c.G54A	p.S18S	GCTCTCGCAGACT	.	47	2	40	0	.	0	A	56247070	G	A	56247070	2	1	19	1	0	0	0	0	0	0	0	1	11104	1074	38	1		1	OR4D2	17	56247070	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	13364602	56247070	24948140	130	2604											
HEATR6	63897	bcgsc.ca	37	chr17	58137371	58137371	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagggggtaaaagcccttctGtggtcactggtatcttcagc	9	11	12	9	0	4	0	2	0	2	0	4	0	4	0	1	4	2	2	1	4	4	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	HEATR6	NM_022070	exon10	c.C1503A	p.H501Q	CCTTCTGTGGTCA	.	52	4	39	0	.	98	T	58137371	T	T	58137371	3	4	19	1	0	0	0	0	1	0	0	0	7074	1368	48	3	2086	3	HEATR6	17	58137371	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	1890301	58137371	23057839	131	2605											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72341086	72341086	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acctggctggctcagagcgcGcctcgcaggtgaggctggga	6	6	17	12	3	1	2	1	1	0	1	2	3	1	3	2	5	1	4	2	5	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_153209	exon7	c.G769A	p.A257T	GAGCGCGCCTCGC	.	37	7	21	0	.	.	A	72341086	G	A	72341086	3	1	19	1	0	0	0	0	1	0	0	0	8324	1087	38	1	795	1	KIF19	17	72341086	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	14203715	72341086	8854124	132	2606											
LRRC45	201255	ucsc.edu;bcgsc.ca	37	chr17	79987031	79987031	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atgcaggagcgggtgcagagGctggaggcggcgcggctgtc	6	5	21	9	4	0	1	0	0	0	1	1	3	0	3	0	7	3	4	0	7	0	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	LRRC45	NM_144999	exon13	c.G1371T	p.R457S	GCAGAGGCTGGAG	.	25	4	26	0	.	22	T	79987031	G	T	79987031	3	4	19	1	0	0	0	0	1	0	0	0	9047	1194	42	3	1421	3	LRRC45	17	79987031	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	7645945	79987031	1208179	133	2607											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21526190	21526190	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	gggaagtttgcctggaaactCcaccatcagcatcagagcgc	11	7	11	12	1	2	1	2	0	0	1	3	3	3	3	3	2	4	2	3	2	2	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198129	exon70	c.C9293T	p.S3098F	GAAACTCCACCAT	.	36	7	43	0	.	.	T	21526190	C	T	21526190	3	4	19	1	0	0	0	0	1	0	0	0	8646	855	30	3	9746	3	LAMA3	18	21526190	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		21526190	56551058	134	2608											
CELF4	56853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	34853025	34853025	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gccaggccattcatgttgagGgccgccatctgctgcatctg	6	10	12	13	1	3	1	1	1	2	0	3	1	3	1	4	2	2	3	4	2	0	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020180	exon7	c.C903T	p.A301A	GTTGAGGGCCGCC	.	45	15	45	0	.	.	A	34853025	G	A	34853025	2	1	19	1	0	0	0	0	0	0	0	1	3240	1219	43	3		3	CELF4	18	34853025	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	13326835	34853025	43224223	135	2609											
NETO1	81832	hgsc.bcm.edu	37	chr18	70450978	70450978	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgccctcatctgcccacatgCggatcaccccaagacccgtg	8	7	8	18	2	3	1	2	0	1	1	3	2	3	2	5	1	3	0	5	1	1	0	rs370635787		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	NETO1,colon,carcinoma,0,1	NETO1	NM_001201465	exon7	c.G803A	p.R268H	CACATGCGGATCA	.	40	3	32	0	.	0	T	70450978	C	T	70450978	3	4	19	1	0	0	0	0	1	0	0	0	10386	768	27	1	814	1	NETO1	18	70450978	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	35597953	70450978	7626270	136	2610											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19576284	19576284	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttcagatttaaacactgacGgagacatgagggtgacacct	13	9	10	9	1	1	5	1	3	0	2	1	6	1	5	1	2	1	0	1	2	2	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_017660	exon2	c.G130A	p.G44R	ACTGACGGAGACA	.	45	13	42	0	.	.	A	19576284	G	A	19576284	3	1	19	1	0	0	0	0	1	0	0	0	6300	1117	39	1	132	1	GATAD2A	19	19576284	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		19576284	39552699	137	2611											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19822519	19822519	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaggcttatttccagtgtgaAttttttcatgttctcgaagg	9	17	9	6	1	2	1	1	1	1	0	4	2	3	1	1	2	0	2	1	2	4	6	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_021030	exon4	c.T1571A	p.I524N	GTGTGAATTTTTT	.	40	12	37	0	.	.	T	19822519	A	T	19822519	3	4	19	1	0	0	0	0	1	0	0	0	17786	101	4	5	361	5	ZNF14	19	19822519	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	246235	19822519	39306464	138	2612											
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21350428	21350428	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tctggagcaagaaaaagagcCctggaatatgaagagacatg	17	6	12	6	0	1	4	0	1	1	3	1	7	1	6	1	2	2	1	1	2	6	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ZNF431,NS,carcinoma,0,1	ZNF431	NM_133473	exon4	c.C278T	p.P93L	AAGAGCCCTGGAA	.	72	10	66	0	.	0	T	21350428	C	T	21350428	3	4	19	1	0	0	0	0	1	0	0	0	17962	623	22	3	292	3	ZNF431	19	21350428	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	1527909	21350428	37778555	139	2613											
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21910039	21910039	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tatcttatgtgtagtaagggTtgaggactggttaaaggctt	10	15	13	3	0	1	1	0	1	1	0	1	2	1	2	0	4	0	5	0	4	6	7	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_173531	exon5	c.A1075G	p.T359A	TAAGGGTTGAGGA	.	53	8	63	0	.	.	C	21910039	T	C	21910039	3	2	19	1	0	0	0	0	1	0	0	0	17771	1725	60	4	557	4	ZNF100	19	21910039	Missense_Mutation	SNP	T	TCGA-W5-AA30-01A-31D-A417-09	559611	21910039	37218944	140	2614											
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34916999	34916999	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aattttgtattatacaagaaGacccagatgaattattgttt	15	16	6	4	0	0	4	0	1	0	3	0	4	0	4	1	0	1	2	1	0	8	8	rs372339509		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032346	exon7	c.G1051A	p.D351N	CAAGAAGACCCAG	.	84	16	73	0	.	.	A	34916999	G	A	34916999	3	1	19	1	0	0	0	0	1	0	0	0	11667	942	33	3	1077	3	PDCD2L	19	34916999	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	13006960	34916999	24211984	141	2615											
SERTAD1	29950	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40929001	40929001	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agcaggtccaaggcacccagGctgggcgctgctcccccgat	7	5	13	16	2	0	0	0	0	0	0	2	1	2	0	4	4	2	5	4	4	1	0	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	SERTAD1	NM_013376	exon2	c.C453T	p.S151S	ACCCAGGCTGGGC	.	29	4	37	0	.	18	A	40929001	G	A	40929001	2	1	19	1	0	0	0	0	0	0	0	1	14174	1194	42	3		3	SERTAD1	19	40929001	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	6012002	40929001	18199982	142	2616											
MIA	8190	hgsc.bcm.edu	37	chr19	41281791	41281791	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctcttctggggaggcagcGtgagtcttgggagagtgaaa	8	9	18	6	1	3	3	0	2	3	1	3	5	3	4	0	5	1	2	0	5	1	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001202553	exon3	c.261+1G>T	.	GGCAGCGTGAGTC	.	63	4	77	0	.	.	T	41281791	G	T	41281791	5	4	19	1	0	0	0	0	0	0	1	0	9612	1159	40	2	268	2	MIA	19	41281791	Splice_Site	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	352790	41281791	17847192	143	2617											
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45162133	45162133	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctattggtccaaatgttcccGtgaggtcctttggcactgtc	6	14	10	11	1	0	1	0	1	0	0	4	1	3	1	3	3	0	2	3	3	2	4	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006505	exon6	c.G1115T	p.R372L	GTTCCCGTGAGGT	.	29	12	34	0	.	.	T	45162133	G	T	45162133	3	4	19	1	0	0	0	0	1	0	0	0	12889	1145	40	2	1137	2	PVR	19	45162133	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	3880342	45162133	13966850	144	2618											
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52249678	52249678	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	atggcaacggccacatttatCctctctttagggtcgttggt	7	14	10	10	2	1	0	0	0	1	0	4	0	2	0	2	4	1	2	2	4	3	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001193306	exon3	c.G570T	p.R190S	ATTTATCCTCTCT	.	44	13	36	0	.	.	A	52249678	C	A	52249678	3	1	19	1	0	0	0	0	1	0	0	0	6072	854	30	3	486	3	FPR1	19	52249678	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	7087545	52249678	6879305	145	2619											
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52941195	52941195	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtcaaaacccatatttttaAtaactacagaaatgattttc	16	15	3	7	0	1	2	1	1	0	1	2	2	1	2	1	0	3	0	1	0	7	8	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001143939	exon4	c.A521T	p.N174I	TTTTTAATAACTA	.	28	6	29	0	.	.	T	52941195	A	T	52941195	3	4	19	1	0	0	0	0	1	0	0	0	18030	101	4	5	535	5	ZNF534	19	52941195	Missense_Mutation	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	691517	52941195	6187788	146	2620											
ZNF543	125919	hgsc.bcm.edu	37	chr19	57840047	57840047	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgggaaggcgttcaaccGtaggtcacacctcaagcagc	10	7	13	11	2	3	0	3	0	0	0	3	1	3	1	2	3	3	3	2	3	4	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ZNF543,colon,carcinoma,0,1	ZNF543	NM_213598	exon4	c.G1217A	p.R406H	TCAACCGTAGGTC	.	46	2	35	0	.	0	A	57840047	G	A	57840047	3	1	19	1	0	0	0	0	1	0	0	0	18033	1145	40	1	1231	1	ZNF543	19	57840047	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	4898852	57840047	1288936	147	2621											
ANGPT4	51378	hgsc.bcm.edu;ucsc.edu	37	chr20	870928	870928	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggctggtgcccagctctagCatgggggccgtctgattctg	5	10	15	11	1	3	1	0	1	3	0	3	1	3	1	2	4	3	3	2	4	1	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015985	exon2	c.G393A	p.M131I	CTCTAGCATGGGG	.	35	4	21	0	.	.	T	870928	C	T	870928	3	4	19	1	0	0	0	0	1	0	0	0	608	710	25	3	1150	3	ANGPT4	20	870928	Missense_Mutation	SNP	C	TCGA-W5-AA30-01A-31D-A417-09		870928	62154592	148	2622											
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu	37	chr20	6093271	6093271	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctcttctgatcttctaatatCtagaaataaatattttttaa	14	19	2	6	0	5	2	0	1	5	1	5	2	5	2	0	0	0	0	0	0	8	10	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FERMT1_ENST00000339538,NS,adenocarcinoma,0,2	FERMT1_ENST00000339538	NM_017671	exon5	c.386-1G>A	.	TAATATCTAGAAA	.	43	4	52	0	.	0	T	6093271	C	T	6093271	5	4	19	1	0	0	0	0	0	0	1	0	5850	927	32	3	1696	3	FERMT1	20	6093271	Splice_Site	SNP	C	TCGA-W5-AA30-01A-31D-A417-09	5222343	6093271	56932249	149	2623											
CTNNBL1	56259	hgsc.bcm.edu	37	chr20	36396410	36396410	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtacagagggtgcccaGcagggtcttctacagtggct	8	10	14	9	0	2	1	0	0	2	1	2	1	2	1	1	3	4	3	1	3	2	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CTNNBL1,NS,carcinoma,0,1	CTNNBL1	NM_030877	exon7	c.G714A	p.Q238Q	TGCCCAGCAGGGT	.	43	3	37	0	.	0	A	36396410	G	A	36396410	2	1	19	1	0	0	0	0	0	0	0	1	4042	962	34	3		3	CTNNBL1	20	36396410	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	30303139	36396410	26629110	150	2624											
MYBL2	4605	hgsc.bcm.edu;bcgsc.ca	37	chr20	42311453	42311453	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaccgcactgaccagcaatGccagtacaggtggctgagag	12	5	13	11	1	0	2	0	2	0	1	0	4	0	2	3	2	4	4	3	2	3	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_002466	exon4	c.G206T	p.C69F	AGCAATGCCAGTA	.	72	4	45	0	.	.	T	42311453	G	T	42311453	3	4	19	1	0	0	0	0	1	0	0	0	10058	1319	46	3	220	3	MYBL2	20	42311453	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5915043	42311453	20714067	151	2625											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47683047	47683047	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcacattcattatttaaaaGgtattgatgcatagattcat	15	15	6	5	0	2	2	2	1	0	1	2	2	2	2	0	1	2	3	0	1	5	8	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001256135	exon5	c.G476A	p.R159K	TTAAAAGGTATTG	.	49	20	32	0	.	.	A	47683047	G	A	47683047	3	1	19	1	0	0	0	0	1	0	0	0	3955	1014	35	3	490	3	CSE1L	20	47683047	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	5371594	47683047	15342473	152	2626											
SLC17A9	63910	hgsc.bcm.edu	37	chr20	61594022	61594022	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctgctcctggaatggtacGgctggcagagcatcttctat	7	11	11	12	1	2	1	0	0	2	1	3	2	3	2	2	4	3	5	2	4	3	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	SLC17A9,NS,carcinoma,0,1	SLC17A9	NM_022082	exon5	c.G544T	p.G182C	TGGTACGGCTGGC	.	38	2	53	0	.	0	T	61594022	G	T	61594022	3	4	19	1	0	0	0	0	1	0	0	0	14479	1116	39	2	562	2	SLC17A9	20	61594022	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	13910975	61594022	1431498	153	2627											
HUNK	30811	hgsc.bcm.edu	37	chr21	33362484	33362484	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagatcttgaattccatgccGtgcaggtaagaacttggggg	10	10	14	7	1	1	3	0	1	1	2	2	4	2	3	2	3	3	2	2	3	3	4	rs367545209	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HUNK,NS,carcinoma,0,1	HUNK	NM_014586	exon9	c.G1300T	p.V434L	CATGCCGTGCAGG	.	33	2	35	0	.	0	T	33362484	G	T	33362484	3	4	19	1	0	0	0	0	1	0	0	0	7502	1145	40	2	1334	2	HUNK	21	33362484	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		33362484	14767411	154	2628											
C22orf42	150297	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	32555003	32555003	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcagcatcttcggcgtcttcGggaggctgaggtactgcatg	6	11	14	10	3	3	1	1	1	2	0	5	2	3	2	0	4	3	4	0	4	1	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001010859	exon1	c.C200A	p.P67Q	GTCTTCGGGAGGC	.	28	4	33	0	.	.	T	32555003	G	T	32555003	3	4	19	1	0	0	0	0	1	0	0	0	2163	1116	39	2	591	2	C22orf42	22	32555003	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		32555003	18749563	155	2629											
ARSH	347527	bcgsc.ca	37	chrX	2945415	2945415	+	Silent	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagggatattccggtggccGtcagtcttggaggctgggag	6	9	17	9	2	2	0	1	0	1	0	3	3	3	3	3	6	0	1	3	6	1	3	rs373570475	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ARSH	NM_001011719	exon7	c.G1098T	p.P366P	GTGGCCGTCAGTC	.	21	3	33	0	.	72	T	2945415	T	T	2945415	2	4	19	1	0	0	0	0	0	0	0	1	992	1132	40	2		2	ARSH	23	2945415	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09		2945415	152325145	156	2630											
RPS6KA3	6197	broad.mit.edu	37	chrX	20179855	20179855	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttcctctggtgtatcatcAggaccatttgcaaatggagt	10	14	9	8	0	3	0	2	0	1	0	4	2	4	2	2	3	1	2	2	3	2	3	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	RPS6KA3	NM_004586	exon20	c.T1866C	p.P622P	ATCATCAGGACCA	.	70	4	39	0	.	110	G	20179855	A	G	20179855	2	3	19	1	0	0	0	0	0	0	0	1	13704	175	7	4		4	RPS6KA3	23	20179855	Silent	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	17234440	20179855	135090705	157	2631											
DDX53	168400	ucsc.edu;bcgsc.ca	37	chrX	23018970	23018970	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaatagatcttatagtagttGcacaaaccggaacagggaaa	17	8	10	6	1	1	1	0	0	1	1	1	4	1	3	1	2	3	3	1	2	8	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	DDX53	NM_182699	exon1	c.G796A	p.A266T	GTAGTTGCACAAA	.	36	4	56	0	.	76	A	23018970	G	A	23018970	3	1	19	1	0	0	0	0	1	0	0	0	4394	1319	46	3	798	3	DDX53	23	23018970	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	2839115	23018970	132251590	158	2632											
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	49062181	49062181	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcagtgggccactggatctGccgaggtacccctcccccgc	5	6	12	18	3	1	0	0	0	1	0	2	2	2	1	6	3	2	2	6	3	1	1	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_005183	exon47	c.C5598T	p.G1866G	GGATCTGCCGAGG	.	23	14	30	0	.	.	A	49062181	G	A	49062181	2	1	19	1	0	0	0	0	0	0	0	1	2561	1306	46	3		3	CACNA1F	23	49062181	Silent	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	26043211	49062181	106208379	159	2633											
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	77912769	77912769	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgcactgagtgatgagatcAgataggttggtggctgggct	9	11	16	5	0	1	4	1	3	0	2	1	5	1	4	0	4	1	4	0	4	1	2	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_152694	exon2	c.T1149C	p.S383S	GAGATCAGATAGG	.	15	7	12	0	.	.	G	77912769	A	G	77912769	2	3	19	1	0	0	0	0	0	0	0	1	17649	175	7	4		4	ZCCHC5	23	77912769	Silent	SNP	A	TCGA-W5-AA30-01A-31D-A417-09	28850588	77912769	77357791	160	2634											
CXorf57	55086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	105876175	105876175	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttttaggtcagaactggatGatatgccagaaaattgcatc	13	13	9	6	0	1	3	1	1	0	2	2	4	1	4	1	2	3	1	1	2	5	5	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_018015	exon5	c.G1102T	p.D368Y	CTGGATGATATGC	.	140	13	113	0	.	.	T	105876175	G	T	105876175	3	4	19	1	0	0	0	0	1	0	0	0	4136	1290	45	3	1120	3	CXorf57	23	105876175	Missense_Mutation	SNP	G	TCGA-W5-AA30-01A-31D-A417-09	27963406	105876175	49394385	161	2635											
STIL	6491	broad.mit.edu	37	chr1	47770618	47770618	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttggcgttgggttccaaagtGcacattttgatggaggaaag	10	12	14	5	1	0	1	0	1	0	0	1	3	1	3	1	4	1	3	1	4	2	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	STIL	NM_003035	exon3	c.C95T	p.A32V	CAAAGTGCACATT	.	163	4	145	0	.	91	A	47770618	G	A	47770618	3	1	20	1	0	0	0	0	1	0	0	0	15338	1319	46	3	3831	3	STIL	1	47770618	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		47770618	201480003	1	2636											
DNAJC6	9829	hgsc.bcm.edu	37	chr1	65855273	65855273	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccagacaaccccaggcattaCggacaaagtggtttctttgc	11	9	9	12	1	1	1	0	0	1	1	1	2	1	2	3	3	3	2	3	3	3	3	rs139447717		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	DNAJC6,NS,carcinoma,0,1	DNAJC6	NM_001256864	exon11	c.C1431T	p.Y477Y	GCATTACGGACAA	.	48	2	37	0	0.000	0	T	65855273	C	T	65855273	2	4	20	1	0	0	0	0	0	0	0	1	4680	547	19	1		1	DNAJC6	1	65855273	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	18084655	65855273	183395348	2	2637											
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120438659	120438659	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tggtatgtaaggatgatcctCcagcagttccccatgttctg	8	13	10	10	0	1	1	0	1	1	0	4	2	4	2	4	2	1	5	4	2	2	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ADAM30,hand,carcinoma,0,1	ADAM30	NM_021794	exon1	c.G301A	p.E101K	GATCCTCCAGCAG	.	44	14	37	0	.	0	T	120438659	C	T	120438659	3	4	20	1	0	0	0	0	1	0	0	0	247	864	30	3	2075	3	ADAM30	1	120438659	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	54583386	120438659	128811962	3	2638											
APH1A	51107	hgsc.bcm.edu	37	chr1	150238956	150238956	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaggctgcgctgaatacttCggagggaccctccagctgtg	8	8	14	11	2	0	2	0	1	0	1	2	4	1	4	2	3	3	3	2	3	2	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	APH1A,trunk,malignant_melanoma,0,1	APH1A	NM_001077628	exon6	c.G710T	p.R237L	ATACTTCGGAGGG	.	48	3	32	0	.	0	A	150238956	C	A	150238956	3	1	20	1	0	0	0	0	1	0	0	0	767	884	31	2	106	2	APH1A	1	150238956	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	29800297	150238956	99011665	4	2639											
ZNF648	127665	hgsc.bcm.edu	37	chr1	182025729	182025729	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cgtgcaaggaaagggcctctCgccagtgtggatgcgctggt	7	8	16	10	3	1	0	0	0	1	0	2	2	1	2	2	4	2	2	2	4	2	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ZNF648,right_upper_lobe,carcinoma,0,1	ZNF648	NM_001009992	exon2	c.G1417A	p.E473K	GCCTCTCGCCAGT	.	14	2	21	0	.	0	T	182025729	C	T	182025729	3	4	20	1	0	0	0	0	1	0	0	0	18120	893	31	1	293	1	ZNF648	1	182025729	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	31786773	182025729	67224892	5	2640											
TPR	7175	hgsc.bcm.edu	37	chr1	186304588	186304588	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggactttagcgcagtaatgCgaacatccaattcatctttc	11	12	8	10	2	2	0	1	0	1	0	4	2	3	1	1	1	3	2	1	1	4	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	TPR_ENST00000367478,NS,carcinoma,-1,2	TPR_ENST00000367478	NM_003292	exon34	c.G4793A	p.R1598H	GTAATGCGAACAT	.	40	2	43	0	.	-1	T	186304588	C	T	186304588	3	4	20	1	0	0	0	0	1	0	0	0	16477	768	27	1	2370	1	TPR	1	186304588	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	4278859	186304588	62946033	6	2641											
NFASC	23114	hgsc.bcm.edu	37	chr1	204956669	204956669	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cactctcaaatatgtggcctGtacgttctgcccttcccttt	6	15	6	14	1	2	0	1	0	2	0	4	0	3	0	3	1	2	2	3	1	3	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	NFASC_ENST00000339876,NS,carcinoma,0,2	NFASC_ENST00000339876	NM_015090	exon23	c.2902+1G>A	.	TGGCCTGTACGTT	.	50	2	57	0	.	0	A	204956669	G	A	204956669	5	1	20	1	0	0	0	0	0	0	1	0	10406	1391	48	3	3085	3	NFASC	1	204956669	Splice_Site	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	18652081	204956669	44293952	7	2642											
PCNXL2	80003	hgsc.bcm.edu	37	chr1	233275579	233275579	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agccaaacatagagtctttcGaaccacattaaatgggcaac	16	8	7	10	1	1	1	0	0	1	1	2	2	1	1	2	1	4	1	2	1	6	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.,1	.	NM_014801	exon20	c.C3540T	p.F1180F	TCTTTCGAACCAC	.	76	3	85	0	.	204	A	233275579	G	A	233275579	2	1	20	1	0	0	0	0	0	0	0	1	11639	1049	37	1		1	PCNXL2	1	233275579	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	28318910	233275579	15975042	8	2643											
FMN2	56776	broad.mit.edu;bcgsc.ca	37	chr1	240371322	240371322	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcctccaccccctctaccCggagcgggcataccccctcc	5	6	6	24	2	1	0	0	0	1	0	4	1	4	1	9	2	3	1	9	2	2	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	FMN2	NM_020066	exon5	c.C3210T	p.P1070P	TCTACCCGGAGCG	.	62	10	54	0	.	451	T	240371322	C	T	240371322	2	4	20	1	0	0	0	0	0	0	0	1	5983	639	23	1		1	FMN2	1	240371322	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	7095743	240371322	8879299	9	2644											
CLIP4	79745	hgsc.bcm.edu	37	chr2	29380187	29380187	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagacaatgagcaaaagccCttccctttcatccagagcca	14	7	7	13	0	1	3	1	1	0	2	3	4	3	3	4	0	3	1	4	0	4	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLIP4,colon,carcinoma,0,1	CLIP4	NM_024692	exon11	c.C1373A	p.P458H	AAAGCCCTTCCCT	.	56	3	69	0	.	0	A	29380187	C	A	29380187	3	1	20	1	0	0	0	0	1	0	0	0	3558	681	24	3	1411	3	CLIP4	2	29380187	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		29380187	213819186	10	2645											
TTC27	55622	broad.mit.edu	37	chr2	32891802	32891802	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaaattgtgaattcacTccagcacccactcctcagga	11	11	5	14	0	3	1	3	1	0	0	5	2	5	2	3	1	1	1	3	1	2	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	TTC27	NM_017735	exon7	c.T906C	p.T302T	ATTCACTCCAGCA	.	64	3	52	0	.	71	C	32891802	T	C	32891802	2	2	20	1	0	0	0	0	0	0	0	1	16757	1538	54	4		4	TTC27	2	32891802	Silent	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	3511615	32891802	210307571	11	2646											
PNPT1	87178	bcgsc.ca	37	chr2	55874589	55874589	+	Splice_Site	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agcagatgaaattggaacccCtataattgggaaaaagaaca	19	7	9	6	0	0	3	0	1	0	2	0	5	0	5	2	2	3	1	2	2	7	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PNPT1	NM_033109	exon20	c.1496-1G>T	.	GAACCCCTATAAT	.	148	5	144	0	.	68	A	55874589	A	A	55874589	5	1	20	1	0	0	0	0	0	0	1	0	12221	695	24	3	896	3	PNPT1	2	55874589	Splice_Site	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	22982787	55874589	187324784	12	2647											
CDCA7	83879	hgsc.bcm.edu;bcgsc.ca	37	chr2	174231093	174231093	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agactgctggggcgttcgagGccagttctgtggcccctgcc	4	9	15	13	2	1	1	0	0	1	1	2	2	1	1	4	4	2	3	4	4	0	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_031942	exon8	c.G1118A	p.G373D	TTCGAGGCCAGTT	.	56	4	76	0	.	.	A	174231093	G	A	174231093	3	1	20	1	0	0	0	0	1	0	0	0	3112	1203	42	3	1148	3	CDCA7	2	174231093	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	118356504	174231093	68968280	13	2648											
CLK1	1195	hgsc.bcm.edu	37	chr2	201718691	201718691	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcatcccagtctaatcGatcgtggtgaaaatatttac	11	14	8	8	2	2	1	1	1	1	0	5	2	3	1	1	1	1	1	1	1	5	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLK1_ENST00000434813,colon,carcinoma,0,2	CLK1_ENST00000434813	NM_001162407	exon12	c.C1372A	p.R458R	CTAATCGATCGTG	.	45	3	55	0	.	0	T	201718691	G	T	201718691	2	4	20	1	0	0	0	0	0	0	0	1	3559	1066	37	2		2	CLK1	2	201718691	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	27487598	201718691	41480682	14	2649											
HDLBP	3069	hgsc.bcm.edu	37	chr2	242189360	242189360	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgtcaggagggatgcGcacggacaccttgtactggt	8	9	13	11	2	2	0	2	0	0	0	2	3	2	3	1	4	2	2	1	4	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	HDLBP,NS,carcinoma,+1,1	HDLBP	NM_005336	exon12	c.C1408A	p.R470S	GGATGCGCACGGA	.	45	2	41	0	.	+1	T	242189360	G	T	242189360	3	4	20	1	0	0	0	0	1	0	0	0	7066	1087	38	2	2466	2	HDLBP	2	242189360	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	40470669	242189360	1010013	15	2650											
RAD54L2	23132	hgsc.bcm.edu	37	chr3	51696927	51696927	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgggtttgccatgccacccGtctccttaaaccataacctc	8	10	7	16	2	1	0	0	0	1	0	3	0	1	0	6	1	4	1	6	1	3	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RAD54L2,colon,carcinoma,0,1	RAD54L2	NM_015106	exon22	c.G3895T	p.V1299F	CCACCCGTCTCCT	.	32	2	34	0	.	0	T	51696927	G	T	51696927	3	4	20	1	0	0	0	0	1	0	0	0	13046	1145	40	2	3977	2	RAD54L2	3	51696927	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		51696927	146325503	16	2651											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52440916	52440916	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gtccactcctcgtcctccccCcagggccctagtggagacca	6	7	9	19	1	0	1	0	0	0	1	5	2	4	1	8	2	0	0	8	2	1	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	BAP1,NS,carcinoma,-2,1	BAP1	NM_004656	exon8	c.G588A	p.W196X	CTCCCCCCAGGGC	.	24	12	35	0	.	-2	T	52440916	C	T	52440916	4	4	20	1	0	0	0	0	0	1	0	0	1309	624	22	3	1641	3	BAP1	3	52440916	Nonsense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	743989	52440916	145581514	17	2652											
LNP1	348801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	100170610	100170610	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctgactgccatcctagaagGcattctcatgaggaccaaga	12	9	9	11	0	2	4	1	2	2	2	4	5	3	5	3	2	1	1	3	2	3	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001085451	exon3	c.G204A	p.R68R	TAGAAGGCATTCT	.	39	4	54	0	.	.	A	100170610	G	A	100170610	2	1	20	1	0	0	0	0	0	0	0	1	8904	1194	42	3		3	LNP1	3	100170610	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	47729694	100170610	97851820	18	2653											
SENP7	57337	hgsc.bcm.edu	37	chr3	101049208	101049208	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgcactcaaagacagtgtCgaagtagtacgtagatcatt	13	11	9	8	2	3	2	2	0	1	2	4	3	3	2	0	0	2	4	0	0	5	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SENP7,rectum,carcinoma,0,1	SENP7	NM_020654	exon20	c.G2721T	p.S907S	CAGTGTCGAAGTA	.	50	2	76	0	.	0	A	101049208	C	A	101049208	2	1	20	1	0	0	0	0	0	0	0	1	14105	871	31	2		2	SENP7	3	101049208	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	878598	101049208	96973222	19	2654											
SLCO2A1	6578	hgsc.bcm.edu	37	chr3	133657273	133657273	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gaggggtcttagacacttacCcagcaagcgcatcaacaaga	14	6	10	11	1	2	2	1	0	1	2	2	3	2	2	1	2	4	2	1	2	5	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SLCO2A1,NS,carcinoma,0,1	SLCO2A1	NM_005630	exon12	c.G1690A	p.A564T	ACTTACCCAGCAA	.	31	2	47	0	.	0	T	133657273	C	T	133657273	3	4	20	1	0	0	0	0	1	0	0	0	14781	637	22	3	253	3	SLCO2A1	3	133657273	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	32608065	133657273	64365157	20	2655											
RBP2	5948	hgsc.bcm.edu	37	chr3	139173596	139173596	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acagcttgtccccctcaatcCactgcttccagccgcggttc	6	10	7	18	2	1	0	1	0	0	0	5	0	4	0	5	1	3	3	5	1	1	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RBP2,NS,carcinoma,0,1	RBP2	NM_004164	exon3	c.G329T	p.W110L	TCAATCCACTGCT	.	25	2	37	0	.	0	A	139173596	C	A	139173596	3	1	20	1	0	0	0	0	1	0	0	0	13208	595	21	3	83	3	RBP2	3	139173596	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	5516323	139173596	58848834	21	2656											
PRKCI	5584	hgsc.bcm.edu;bcgsc.ca	37	chr3	169999040	169999040	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggctgcattcttgctttcaGacagaaagcaggtaagattg	11	11	12	7	0	2	3	1	0	1	3	2	3	2	3	0	2	3	5	0	2	2	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_002740	exon10	c.G969T	p.Q323H	CTTTCAGACAGAA	.	68	4	49	0	.	.	T	169999040	G	T	169999040	3	4	20	1	0	0	0	0	1	0	0	0	12566	933	33	3	1007	3	PRKCI	3	169999040	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	30825444	169999040	28023390	22	2657											
DGKG	1608	bcgsc.ca	37	chr3	186038225	186038225	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tcaaattcttctggagtgagGgagacccaccgttcttcacc	9	11	9	12	1	5	2	2	1	3	1	5	4	5	3	3	2	0	1	3	2	1	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	DGKG	NM_001346	exon2	c.C24A	p.S8S	AGTGAGGGAGACC	.	59	4	72	0	.	98	T	186038225	T	T	186038225	2	4	20	1	0	0	0	0	0	0	0	1	4497	1219	43	3		3	DGKG	3	186038225	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	16039185	186038225	11984205	23	2658											
MUC4	4585	broad.mit.edu	37	chr3	195508902	195508902	+	Silent	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggctagtgacaggaagaggCgtggtgtcacctgtggatac	9	8	17	7	1	1	2	1	1	0	1	1	4	1	4	1	5	1	1	1	5	3	2	rs79929234		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MUC4_ENST00000463781,NS,malignant_melanoma,-1,2	MUC4	NM_018406	exon2	c.G9549C	p.T3183T	AAGAGGCGTGGTG	.	131	6	87	0	C|0.500;G|0.500	1505	G	195508902	C	G	195508902	2	3	20	1	0	0	0	0	0	0	0	1	10026	755	27	5		5	MUC4	3	195508902	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	9470677	195508902	2513528	24	2659											
ENAM	10117	hgsc.bcm.edu	37	chr4	71510219	71510219	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgttattggtacacctgatGaaggctccaatccagaaggc	11	11	10	9	0	0	3	0	2	0	1	2	3	2	3	3	3	1	3	3	3	5	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ENAM_ENST00000396073,NS,carcinoma,0,1	ENAM_ENST00000396073	NM_031889	exon9	c.G3076T	p.E1026X	CCTGATGAAGGCT	.	32	2	41	0	.	0	T	71510219	G	T	71510219	4	4	20	1	0	0	0	0	0	1	0	0	5140	1291	45	3	3106	3	ENAM	4	71510219	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		71510219	119644057	25	2660											
SHROOM3	57619	hgsc.bcm.edu	37	chr4	77700128	77700128	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcgtgaaaatgaagtccaCgctcctcattgagcaacgga	12	9	9	11	3	1	3	1	3	0	0	4	4	3	4	2	1	2	2	2	1	4	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SHROOM3,NS,carcinoma,0,1	SHROOM3	NM_020859	exon11	c.C5789T	p.T1930M	AGTCCACGCTCCT	.	21	2	34	0	.	0	T	77700128	C	T	77700128	3	4	20	1	0	0	0	0	1	0	0	0	14350	536	19	1	5831	1	SHROOM3	4	77700128	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	6189909	77700128	113454148	26	2661											
NAF1	92345	bcgsc.ca	37	chr4	164050118	164050118	+	Silent	SNP	A	G	G																															ggaggcagtggtggagggggAgggggtgggggtagggagta																								novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	NAF1	NM_138386	exon8	c.T1416C	p.P472P	AGGGGGAGGGGGT	.	25	12	69	1	.	69	G	164050118	G	G	164050118	2	3	20	1	0	0	0	0	0	0	0	1	10188	291	11	4		4	NAF1	4	164050118	Silent	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	86349990	164050118	27104158	27	2662	11	2									
NAF1	92345	bcgsc.ca	37	chr4	164050124	164050124	+	Silent	SNP	T	G	G																															agtggtggagggggagggggTgggggtagggagtatggtaa																								novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	NAF1	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	28	13	67	2	.	69	G	164050124	G	G	164050124	2	3	20	1	0	0	0	0	0	0	0	1	10188	1683	59	4		4	NAF1	4	164050124	Silent	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	6	164050124	27104152	28	2663	11	2									
FAT1	2195	ucsc.edu;bcgsc.ca	37	chr4	187539158	187539158	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agcctgtttccatgttaatgGcaaaggattcaatgacttcc	11	13	8	9	0	1	1	1	1	0	0	3	2	3	2	3	2	1	3	3	2	3	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	FAT1	NM_005245	exon10	c.C8582T	p.A2861V	TTAATGGCAAAGG	.	33	4	39	0	.	500	A	187539158	G	A	187539158	3	1	20	1	0	0	0	0	1	0	0	0	5722	1203	42	3	5256	3	FAT1	4	187539158	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	23489034	187539158	3615118	29	2664											
FAM105A	54491	hgsc.bcm.edu;bcgsc.ca	37	chr5	14601188	14601188	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atttctggtggctgccatctGctacttccggaggctacatt	6	14	10	11	1	2	0	0	0	2	0	3	1	3	1	2	4	4	3	2	4	2	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_019018	exon2	c.G179T	p.C60F	CCATCTGCTACTT	.	47	4	47	0	.	.	T	14601188	G	T	14601188	3	4	20	1	0	0	0	0	1	0	0	0	5418	1319	46	3	185	3	FAM105A	5	14601188	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		14601188	166314072	30	2665											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	36961673	36961673	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaaaccactatctcacAtagcccctccaggtaatata	15	9	3	14	0	2	0	2	0	1	0	4	0	3	0	4	1	3	1	4	1	7	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_015384	exon5	c.A446C	p.H149P	TCTCACATAGCCC	.	59	14	43	0	.	.	C	36961673	A	C	36961673	3	2	20	1	0	0	0	0	1	0	0	0	10475	217	8	4	460	4	NIPBL	5	36961673	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	22360485	36961673	143953587	31	2666											
SV2C	22987	hgsc.bcm.edu	37	chr5	75427856	75427856	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatctatgagggggagtatcAgggcatccccagtatgaacc	11	8	13	9	0	2	2	1	2	1	0	3	4	3	3	3	3	1	3	3	3	4	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SV2C,colon,carcinoma,0,1	SV2C	NM_014979	exon2	c.A281G	p.Q94R	AGTATCAGGGCAT	.	28	2	27	0	.	0	G	75427856	A	G	75427856	3	3	20	1	0	0	0	0	1	0	0	0	15475	188	7	4	283	4	SV2C	5	75427856	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	38466183	75427856	105487404	32	2667											
PHF15	0	ucsc.edu	37	chr5	133871604	133871604	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacaactctgacaccactgaCagtaaggccttccagtttgg	11	9	9	12	0	1	2	0	2	1	0	2	3	2	2	3	2	1	2	3	2	2	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PHF15	NM_015288	exon2	c.C57T	p.D19D	CACTGACAGTAAG	.	39	4	35	0	.	60	T	133871604	C	T	133871604	2	4	20	1	0	0	0	0	0	0	0	1	11874	492	17	3		3	PHF15	5	133871604	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	58443748	133871604	47043656	33	2668											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140188703	140188703	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggacgaaacggacgctccgcGccaccgcctactggtactgg	8	5	13	15	6	0	0	0	0	0	0	1	3	1	2	4	4	3	2	4	4	3	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PCDHA4_ENST00000530339,NS,carcinoma,0,2	PCDHA4_ENST00000530339	NM_031500	exon1	c.G1931A	p.R644H	CTCCGCGCCACCG	.	63	20	58	1	.	0	A	140188703	G	A	140188703	3	1	20	1	0	0	0	0	1	0	0	0	11573	1087	38	1	1933	1	PCDHA4	5	140188703	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	6317099	140188703	40726557	34	2669											
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140230059	140230059	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacggggagccagcgctgaCggccacggccactgtgctgg	6	4	16	15	4	0	1	0	1	0	0	0	2	0	2	4	5	3	2	4	5	0	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_031857	exon1	c.C1979G	p.T660R	CGCTGACGGCCAC	.	70	21	50	0	.	.	G	140230059	C	G	140230059	3	3	20	1	0	0	0	0	1	0	0	0	11578	536	19	5	1981	5	PCDHA9	5	140230059	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	41356	140230059	40685201	35	2670											
ARSI	340075	hgsc.bcm.edu	37	chr5	149678175	149678175	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agtcctgtgtggatctggtaCctggtggggaggaggggaag	7	9	20	5	0	1	0	0	0	1	0	2	4	2	4	2	8	1	1	2	8	2	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001012301	exon2	c.G312T	p.R104S	CTGGTACCTGGTG	.	34	4	20	0	.	.	A	149678175	C	A	149678175	3	1	20	1	0	0	0	0	1	0	0	0	993	521	18	3	1401	3	ARSI	5	149678175	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	9448116	149678175	31237085	36	2671											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169509839	169509839	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aagaaggcaaacagatcccaGactcgctgtccacggacctg	13	5	10	13	2	0	3	0	0	0	3	3	4	2	4	3	2	1	2	3	2	3	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004946	exon52	c.G5470A	p.D1824N	ATCCCAGACTCGC	.	54	18	37	0	.	.	A	169509839	G	A	169509839	3	1	20	1	0	0	0	0	1	0	0	0	4714	942	33	3	5676	3	DOCK2	5	169509839	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	19831664	169509839	11405421	37	2672											
DRD1	1812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	174869423	174869423	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccctctccaaggccgcaatgCgccgtatttgtttctgagca	7	11	9	14	3	2	1	0	1	2	0	3	1	2	1	4	1	2	4	4	1	3	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_000794	exon2	c.G680A	p.R227H	GCAATGCGCCGTA	.	33	10	22	0	.	.	T	174869423	C	T	174869423	3	4	20	1	0	0	0	0	1	0	0	0	4782	768	27	1	664	1	DRD1	5	174869423	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	5359584	174869423	6045837	38	2673											
UNC5A	90249	hgsc.bcm.edu	37	chr5	176304913	176304913	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggatgtgctgcacctgggcGaggaggcgccctcccacctc	6	6	14	15	2	0	0	0	0	0	0	2	3	1	2	4	4	2	2	4	4	0	0	rs149355192	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	UNC5A,mouth,carcinoma,0,1	UNC5A	NM_133369	exon11	c.G1654T	p.E552X	CTGGGCGAGGAGG	.	34	2	35	0	.	0	T	176304913	G	T	176304913	4	4	20	1	0	0	0	0	0	1	0	0	17051	1059	37	2	1696	2	UNC5A	5	176304913	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	1435490	176304913	4610347	39	2674											
HLA-B	3106	hgsc.bcm.edu	37	chr6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctacacatcacaGcagcgaccacagctccgatg	10	8	6	17	2	2	0	1	0	1	0	5	2	5	0	4	0	4	2	4	0	1	2	rs74189305	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	54	3	53	2	.	-1	A	31322910	G	A	31322910	3	1	20	1	0	0	0	0	1	0	0	0	7237	971	34	3	114	3	HLA-B	6	31322910	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		31322910	139792157	40	2675											
BRD2	6046	hgsc.bcm.edu	37	chr6	32945701	32945701	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagatgaGgaggacgaggaggaagaaga	18	1	21	1	1	0	5	0	1	0	4	0	14	0	12	0	7	0	0	0	7	4	0	rs200978040	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	BRD2_ENST00000395289,uveal_tract,malignant_melanoma,0,1	BRD2_ENST00000395289	NM_005104	exon9	c.G1497T	p.E499D	AGATGAGGAGGAC	.	23	4	36	1	.	0	T	32945701	G	T	32945701	3	4	20	1	0	0	0	0	1	0	0	0	1504	991	35	3	1527	3	BRD2	6	32945701	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	1622791	32945701	138169366	41	2676											
RPS10	6204	hgsc.bcm.edu	37	chr6	34392484	34392484	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtctctggacggctacggCgtagggtggcaggcacaatc	8	7	15	11	3	1	0	0	0	1	0	3	1	1	1	0	6	1	4	0	6	3	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RPS10,colon,carcinoma,0,1	RPS10	NM_001203245	exon3	c.G284C	p.R95P	CTACGGCGTAGGG	.	57	3	58	1	.	0	G	34392484	C	G	34392484	3	3	20	1	0	0	0	0	1	0	0	0	13672	768	27	5	229	5	RPS10	6	34392484	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	1446783	34392484	136722583	42	2677											
MRAP2	112609	hgsc.bcm.edu	37	chr6	84772626	84772626	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttcagattccattgtgattGgattttgggttggtcttgca	6	19	11	5	0	2	2	1	1	1	1	3	3	3	3	1	3	1	2	1	3	0	8	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_138409	exon3	c.G142T	p.G48X	GTGATTGGATTTT	.	52	4	56	0	.	.	T	84772626	G	T	84772626	4	4	20	1	0	0	0	0	0	1	0	0	9803	1349	47	3	148	3	MRAP2	6	84772626	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	50380142	84772626	86342441	43	2678											
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	102124680	102124680	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cagcaggcattttaaaacagGtaacctttaaattacttcaa	16	12	5	8	0	1	0	1	0	0	0	1	0	1	0	1	2	4	3	1	2	7	7	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_175768	exon4	c.723+1G>T	.	AAACAGGTAACCT	.	53	21	62	0	.	.	T	102124680	G	T	102124680	5	4	20	1	0	0	0	0	0	0	1	0	6815	1275	44	3	738	3	GRIK2	6	102124680	Splice_Site	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	17352054	102124680	68990387	44	2679											
NR2E1	7101	hgsc.bcm.edu	37	chr6	108501554	108501554	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttggaagatgcttggagaGaactgtttgttctaggaata	11	15	12	3	0	1	2	0	0	1	2	1	6	1	5	0	3	2	3	0	3	5	7	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	NR2E1,caecum,carcinoma,0,1	NR2E1	NM_003269	exon6	c.G670T	p.E224X	TGGAGAGAACTGT	.	39	2	53	0	.	0	T	108501554	G	T	108501554	4	4	20	1	0	0	0	0	0	1	0	0	10673	943	33	3	692	3	NR2E1	6	108501554	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	6376874	108501554	62613513	45	2680											
KPNA5	3841	hgsc.bcm.edu	37	chr6	117045494	117045494	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagttgtatcacctgcattaAgggcagttggtaatattgtg	11	14	11	5	0	1	0	1	0	0	0	1	0	1	0	1	2	1	6	1	2	5	7	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	KPNA5,caecum,carcinoma,-2,1	KPNA5	NM_002269	exon10	c.A955G	p.R319G	GCATTAAGGGCAG	.	48	2	52	0	.	-2	G	117045494	A	G	117045494	3	3	20	1	0	0	0	0	1	0	0	0	8476	63	3	4	993	4	KPNA5	6	117045494	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	8543940	117045494	54069573	46	2681											
GRM1	2911	hgsc.bcm.edu	37	chr6	146720582	146720582	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcatctggctagcttttgtgCccatttactttgggagcaac	7	15	9	10	0	2	0	1	0	1	0	2	1	2	1	1	2	5	3	1	2	3	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	GRM1_ENST00000392299,NS,carcinoma,0,2	GRM1_ENST00000392299	NM_000838	exon8	c.C2407T	p.P803S	TTTGTGCCCATTT	.	34	2	24	0	.	0	T	146720582	C	T	146720582	3	4	20	1	0	0	0	0	1	0	0	0	6837	739	26	3	2433	3	GRM1	6	146720582	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	29675088	146720582	24394485	47	2682											
SASH1	23328	hgsc.bcm.edu	37	chr6	148792601	148792601	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtatttctggcagaacttccGaaagaaccagaaaggaataa	17	8	9	7	1	1	3	0	0	1	3	2	5	2	4	2	2	2	2	2	2	7	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SASH1,NS,carcinoma,0,2	SASH1	NM_015278	exon6	c.G476T	p.R159L	ACTTCCGAAAGAA	.	75	3	124	0	.	0	T	148792601	G	T	148792601	3	4	20	1	0	0	0	0	1	0	0	0	13901	1058	37	2	498	2	SASH1	6	148792601	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	2072019	148792601	22322466	48	2683											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48314511	48314511	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgatagatgtgtactatgtgCttcctcatgctgtaaggctc	8	15	10	8	0	1	2	1	1	0	1	3	2	2	2	1	1	3	5	1	1	4	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_152701	exon17	c.C5248T	p.L1750F	TATGTGCTTCCTC	.	54	10	53	0	.	.	T	48314511	C	T	48314511	3	4	20	1	0	0	0	0	1	0	0	0	31	797	28	3	5143	3	ABCA13	7	48314511	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		48314511	110824152	49	2684											
CD36	948	hgsc.bcm.edu	37	chr7	80302680	80302680	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtatattacagagtattaaaGaatctgaagaggaactatat	18	12	8	3	0	1	4	0	1	1	3	1	5	1	5	0	1	2	2	0	1	11	7	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CD36_ENST00000447544,NS,carcinoma,0,8	CD36_ENST00000447544	NM_001127444	exon11	c.G1209T	p.K403N	ATTAAAGAATCTG	.	50	2	77	0	.	0	T	80302680	G	T	80302680	3	4	20	1	0	0	0	0	1	0	0	0	3029	933	33	3	1251	3	CD36	7	80302680	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	31988169	80302680	78835983	50	2685											
CYP3A43	64816	broad.mit.edu	37	chr7	99445221	99445221	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccagtgtaaaattcaaGgaagtaagaaaataaggtga	19	9	9	4	0	2	2	2	1	0	1	2	3	2	3	1	2	0	2	1	2	8	5	rs373256715	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CYP3A43	NM_057096	exon5	c.G429T	p.K143N	ATTCAAGGAAGTA	.	52	3	62	1	.	52	T	99445221	G	T	99445221	3	4	20	1	0	0	0	0	1	0	0	0	4202	991	35	3	447	3	CYP3A43	7	99445221	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	19142541	99445221	59693442	51	2686											
GPR37	2861	hgsc.bcm.edu	37	chr7	124404434	124404434	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cccgccagtccattggccgtCttggacaggggcttgtggtg	4	10	15	12	2	1	0	0	0	1	0	2	1	2	1	4	5	0	1	4	5	0	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_005302	exon1	c.G597A	p.K199K	GGCCGTCTTGGAC	.	79	3	90	0	.	.	T	124404434	C	T	124404434	2	4	20	1	0	0	0	0	0	0	0	1	6731	912	32	3		3	GPR37	7	124404434	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	24959213	124404434	34734229	52	2687											
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141429375	141429375	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccagtcaccccagggatataCccatcatggtgacactgggg	10	7	11	13	0	2	1	2	1	0	0	2	2	2	2	4	4	1	0	4	4	2	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001105558	exon11	c.C1580T	p.T527I	GATATACCCATCA	.	54	9	46	0	.	.	T	141429375	C	T	141429375	3	4	20	1	0	0	0	0	1	0	0	0	17405	507	18	3	1622	3	WEE2	7	141429375	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	17024941	141429375	17709288	53	2688											
PRSS1	5644	bcgsc.ca	37	chr7	142460339	142460339	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgagccaggctaagtGtgaagcctcctaccctggaa	9	9	12	11	0	0	2	0	2	0	0	1	3	1	3	4	2	4	2	4	2	4	2	rs200973660	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PRSS1	NM_002769	exon4	c.G512A	p.C171Y	CTAAGTGTGAAGC	.	89	13	92	2	.	68	A	142460339	A	A	142460339	3	1	20	1	0	0	0	0	1	0	0	0	12664	1377	48	3	526	3	PRSS1	7	142460339	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	1030964	142460339	16678324	54	2689											
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143792858	143792858	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctggtctcctacttgcacAtcctggtggccatcttgagg	5	13	11	12	0	2	1	0	1	2	0	4	1	3	1	3	4	3	2	3	4	1	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001004135	exon1	c.A658T	p.I220F	TTGCACATCCTGG	.	41	18	25	0	.	.	T	143792858	A	T	143792858	3	4	20	1	0	0	0	0	1	0	0	0	11023	217	8	5	660	5	OR2A12	7	143792858	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	1332519	143792858	15345805	55	2690											
LONRF1	91694	hgsc.bcm.edu	37	chr8	12586483	12586483	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctttttaaaaccctaaacCgctttcctccaactgtatca	11	14	2	14	1	2	0	1	0	1	0	4	0	4	0	4	0	3	2	4	0	6	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	LONRF1,NS,carcinoma,0,1	LONRF1	NM_152271	exon10	c.G1937T	p.R646L	CTAAACCGCTTTC	.	34	3	48	0	.	0	A	12586483	C	A	12586483	3	1	20	1	0	0	0	0	1	0	0	0	8939	652	23	2	396	2	LONRF1	8	12586483	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		12586483	133777539	56	2691											
SCARA5	286133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	27764677	27764677	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttattacctttgaacccacGcatgcccattggtcctgtgg	7	13	9	12	1	0	1	0	1	0	0	1	1	1	1	4	2	3	2	4	2	3	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SCARA5,caecum,carcinoma,0,1	SCARA5	NM_173833	exon6	c.C1084T	p.R362C	ACCCACGCATGCC	.	30	7	36	0	.	0	A	27764677	G	A	27764677	3	1	20	1	0	0	0	0	1	0	0	0	13933	1087	38	1	419	1	SCARA5	8	27764677	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	15178194	27764677	118599345	57	2692											
CSPP1	79848	bcgsc.ca	37	chr8	68028315	68028315	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaaaatgaagatttgcGcagtggactcagcagcgccc	11	9	10	11	2	2	2	2	1	1	1	3	3	2	3	1	1	3	2	1	1	3	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CSPP1	NM_024790	exon11	c.G1439T	p.R480L	ATTTGCGCAGTGG	.	57	4	64	0	.	129	T	68028315	T	T	68028315	3	4	20	1	0	0	0	0	1	0	0	0	3987	1087	38	2	1594	2	CSPP1	8	68028315	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	40263638	68028315	78335707	58	2693											
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	110131447	110131447	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccatcaacccggtgatttaCaatctcatgtcccagaaatt	12	11	6	12	1	2	2	2	1	1	1	4	2	3	2	3	1	2	0	3	1	4	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003301	exon2	c.C960A	p.Y320X	GATTTACAATCTC	.	51	14	41	0	.	.	A	110131447	C	A	110131447	4	1	20	1	0	0	0	0	0	1	0	0	16541	489	17	3	966	3	TRHR	8	110131447	Nonsense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	42103132	110131447	36232575	59	2694											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110431382	110431382	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaacgaaatacactgggaCaaatgtttctcttcagagga	16	9	9	7	1	2	2	1	0	1	2	3	5	2	4	0	2	2	1	0	2	5	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_177531	exon22	c.C2417A	p.T806K	CTGGGACAAATGT	.	53	17	36	0	.	.	A	110431382	C	A	110431382	3	1	20	1	0	0	0	0	1	0	0	0	12020	478	17	3	2503	3	PKHD1L1	8	110431382	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	299935	110431382	35932640	60	2695											
HAS2	3037	broad.mit.edu	37	chr8	122626911	122626911	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttgtgaaaccacattGcattgtacagccattctcgg	10	13	9	9	1	1	1	0	1	1	0	2	2	1	1	2	1	4	3	2	1	2	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	HAS2	NM_005328	exon4	c.C1097A	p.A366E	CACATTGCATTGT	.	40	3	53	0	.	87	T	122626911	G	T	122626911	3	4	20	1	0	0	0	0	1	0	0	0	7003	1319	46	3	565	3	HAS2	8	122626911	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	12195529	122626911	23737111	61	2696											
ZDHHC21	340481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	14619079	14619079	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgagaaggtctgctgccatGgctttcggggcctcgatcta	6	11	13	11	2	2	1	0	1	2	1	4	3	2	1	2	4	2	2	2	4	2	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_178566	exon10	c.C683T	p.P228L	TGCCATGGCTTTC	.	18	9	16	0	.	.	A	14619079	G	A	14619079	3	1	20	1	0	0	0	0	1	0	0	0	17670	1348	47	3	110	3	ZDHHC21	9	14619079	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		14619079	126594352	62	2697											
RORB	6096	ucsc.edu;bcgsc.ca	37	chr9	77300435	77300435	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacttgcacggggagaagctGcaggtatttaagcaatctca	13	9	11	8	1	1	1	1	0	1	1	2	2	1	1	0	3	5	5	0	3	5	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	RORB	NM_006914	exon10	c.G1281T	p.L427L	GAAGCTGCAGGTA	.	39	4	29	0	.	89	T	77300435	G	T	77300435	2	4	20	1	0	0	0	0	0	0	0	1	13581	1306	46	3		3	RORB	9	77300435	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	62681356	77300435	63912996	63	2698											
GRIN1	2902	hgsc.bcm.edu	37	chr9	140053112	140053112	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agatcatctggccaggcggaGagacagagaagcctcgaggg	12	4	16	9	2	2	3	1	0	1	3	3	7	2	4	2	4	1	0	2	4	1	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	GRIN1,NS,carcinoma,0,1	GRIN1	NM_001185091	exon9	c.G1216T	p.E406X	GGCGGAGAGACAG	.	68	3	74	0	.	0	T	140053112	G	T	140053112	4	4	20	1	0	0	0	0	0	1	0	0	6819	943	33	3	1250	3	GRIN1	9	140053112	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	62752677	140053112	1160319	64	2699											
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	140093584	140093584	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcctcctcggcctccCgtggccgaggctccctgttg	1	10	10	20	3	0	0	0	0	0	0	6	1	5	0	8	3	0	2	8	3	0	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001128228	exon1	c.G1580T	p.R527L	GCCTCCCGTGGCC	.	14	5	18	0	.	.	A	140093584	C	A	140093584	3	1	20	1	0	0	0	0	1	0	0	0	16482	652	23	2	651	2	TPRN	9	140093584	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	40472	140093584	1119847	65	2700											
TAF3	83860	hgsc.bcm.edu	37	chr10	8019213	8019213	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aacttccacagataaaagtgGaaccagtcgctctggccccg	12	7	9	13	2	1	1	0	0	1	1	3	2	2	2	4	2	2	1	4	2	4	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	TAF3,NS,carcinoma,0,1	TAF3	NM_031923	exon4	c.G2242T	p.E748X	AAAGTGGAACCAG	.	56	3	65	0	.	0	T	8019213	G	T	8019213	4	4	20	1	0	0	0	0	0	1	0	0	15582	1175	41	3	2256	3	TAF3	10	8019213	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		8019213	127515534	66	2701											
OGDHL	55753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	50960205	50960205	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgccgaatgatctcccgcaGagagagggtgttttcagagc	9	8	14	10	3	2	4	1	1	1	3	3	6	2	4	2	1	1	2	2	1	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_018245	exon5	c.C568A	p.L190M	CCCGCAGAGAGAG	.	30	7	43	0	.	.	T	50960205	G	T	50960205	3	4	20	1	0	0	0	0	1	0	0	0	10888	933	33	3	2540	3	OGDHL	10	50960205	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	42940992	50960205	84574542	67	2702											
SH3PXD2A	9644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105526913	105526913	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccaccttcaatgggaaacttAtccaaaagctgcatctgaga	14	9	7	11	0	2	1	1	1	1	1	3	3	3	2	3	1	3	2	3	1	5	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_014631	exon3	c.T168A	p.D56E	AAACTTATCCAAA	.	18	4	48	0	.	.	T	105526913	A	T	105526913	3	4	20	1	0	0	0	0	1	0	0	0	14311	446	16	5	3197	5	SH3PXD2A	10	105526913	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	54566708	105526913	30007834	68	2703											
ZDHHC6	64429	hgsc.bcm.edu	37	chr10	114190585	114190585	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctatttttcttctccccctCtggggcttgatctgtttcag	3	19	7	12	0	6	1	1	1	5	0	7	1	6	1	2	2	0	2	2	2	1	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ZDHHC6,NS,carcinoma,0,1	ZDHHC6	NM_022494	exon11	c.G1219T	p.E407X	CCCCCTCTGGGGC	.	47	2	68	0	.	0	A	114190585	C	A	114190585	4	1	20	1	0	0	0	0	0	1	0	0	17677	922	32	3	26	3	ZDHHC6	10	114190585	Nonsense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	8663672	114190585	21344162	69	2704											
PDE3B	5140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	14666369	14666369	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctcaggccgctgctctccGgcctggtggggggcgctggc	1	7	17	16	3	2	0	1	0	1	0	3	0	2	0	4	7	1	3	4	7	0	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_000922	exon1	c.G748T	p.G250C	CTCTCCGGCCTGG	.	23	6	35	0	.	.	T	14666369	G	T	14666369	3	4	20	1	0	0	0	0	1	0	0	0	11685	1116	39	2	750	2	PDE3B	11	14666369	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		14666369	120340147	70	2705											
OR5M11	219487	broad.mit.edu	37	chr11	56309838	56309838	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atctcaggacattcttcaagGcctgcttcacatctttattc	9	15	5	12	0	5	0	3	0	3	0	7	1	5	1	1	2	1	1	1	2	2	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	OR5M11	NM_001005245	exon1	c.C896A	p.A299D	TTCAAGGCCTGCT	.	28	3	34	0	.	60	T	56309838	G	T	56309838	3	4	20	1	0	0	0	0	1	0	0	0	11221	1203	42	3	24	3	OR5M11	11	56309838	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	41643469	56309838	78696678	71	2706											
OSBP	5007	hgsc.bcm.edu	37	chr11	59369134	59369134	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tttaccagaacccacattgcCaggagtgtttgccggcagca	10	9	10	12	1	0	1	0	0	0	1	0	2	0	2	4	2	5	3	4	2	2	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	OSBP,colon,carcinoma,0,1	OSBP	NM_002556	exon4	c.G1000C	p.G334R	CATTGCCAGGAGT	.	35	2	32	0	.	0	G	59369134	C	G	59369134	3	3	20	1	0	0	0	0	1	0	0	0	11320	594	21	5	1467	5	OSBP	11	59369134	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	3059296	59369134	75637382	72	2707											
ZP1	22917	hgsc.bcm.edu;bcgsc.ca	37	chr11	60638604	60638604	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cttccctctcacccactgtgGaaccacaatgcaggtaggag	10	8	9	14	0	1	0	1	0	1	0	3	2	2	2	3	3	2	2	3	3	3	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_207341	exon5	c.G1001T	p.G334V	ACTGTGGAACCAC	.	48	4	49	0	.	.	T	60638604	G	T	60638604	3	4	20	1	0	0	0	0	1	0	0	0	18257	1174	41	3	1019	3	ZP1	11	60638604	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	1269470	60638604	74367912	73	2708											
SPTBN2	6712	broad.mit.edu;bcgsc.ca	37	chr11	66460137	66460137	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctcctgcaggcgctccCgccgctctccagccagctcc	3	7	11	20	3	1	0	0	0	1	0	5	0	4	0	6	2	4	5	6	2	0	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	SPTBN2	NM_006946	exon25	c.G5060A	p.R1687Q	CGCTCCCGCCGCT	.	8	4	22	0	.	188	T	66460137	C	T	66460137	3	4	20	1	0	0	0	0	1	0	0	0	15176	652	23	1	2164	1	SPTBN2	11	66460137	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	5821533	66460137	68546379	74	2709											
ANKRD13D	338692	bcgsc.ca	37	chr11	67068427	67068427	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caatggaagggccaccagccGtgcctcacccatgtcctgtg	8	7	11	15	1	1	0	1	0	0	0	2	1	2	1	6	2	2	0	6	2	2	0	rs368733850	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ANKRD13D	.	.	.	.	CCAGCCGTGCCTC	.	23	3	35	0	.	71	T	67068427	T	T	67068427	3	4	20	1	0	0	0	0	1	0	0	0	640	1160	40	2		2	ANKRD13D	11	67068427	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	608290	67068427	67938089	75	2710											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825221	95825221	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgctgctgctgctgCtgttgttgctgttgttgttg	0	20	14	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	13	0	0	0	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MAML2,NS,carcinoma,0,1	MAML2	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	31	2	45	0	.	0	T	95825221	C	T	95825221	2	4	20	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825221	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	28756794	95825221	39181295	76	2711											
OR6X1	390260	bcgsc.ca	37	chr11	123624820	123624820	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgcaggcagagtttgCtggtcatgatggtggggtgg	6	10	18	7	0	1	2	1	1	0	1	1	2	1	2	1	6	3	5	1	6	0	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	OR6X1	NM_001005188	exon1	c.G407A	p.S136N	AGTTTGCTGGTCA	.	17	3	28	0	.	54	T	123624820	T	T	123624820	3	4	20	1	0	0	0	0	1	0	0	0	11259	797	28	3	533	3	OR6X1	11	123624820	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	27799599	123624820	11381696	77	2712											
PPP1R1A	5502	broad.mit.edu	37	chr12	54976556	54976556	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cttgtcatcttcttccgttgCcgtggagacattgccaaagt	7	14	9	11	2	3	1	1	0	2	1	4	2	4	1	3	1	2	1	3	1	1	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PPP1R1A_ENST00000257905,NS,carcinoma,-2,2	PPP1R1A	NM_006741	exon4	c.G207A	p.R69R	CCGTTGCCGTGGA	.	50	3	66	0	.	18	T	54976556	C	T	54976556	2	4	20	1	0	0	0	0	0	0	0	1	12416	726	26	3		3	PPP1R1A	12	54976556	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		54976556	78875339	78	2713											
AVIL	10677	hgsc.bcm.edu	37	chr12	58201157	58201157	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatggccatgaagtggCgtggctccgttcccatcctg	7	10	13	11	2	0	3	0	2	0	1	3	3	3	3	4	3	0	2	4	3	2	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	AVIL,colon,carcinoma,0,1	AVIL	NM_006576	exon12	c.G1448A	p.R483H	AAGTGGCGTGGCT	.	21	3	38	0	.	0	T	58201157	C	T	58201157	3	4	20	1	0	0	0	0	1	0	0	0	1225	768	27	1	1043	1	AVIL	12	58201157	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	3224601	58201157	75650738	79	2714											
CEP290	80184	hgsc.bcm.edu	37	chr12	88530507	88530507	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctaattgtttttcaagttgGcaaatttcattacgtaaaaa	14	17	5	5	1	3	0	2	0	1	0	3	0	3	0	0	1	1	4	0	1	7	8	rs370725951	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_025114	exon6	c.C354A	p.C118X	AAGTTGGCAAATT	.	80	4	83	0	.	.	T	88530507	G	T	88530507	4	4	20	1	0	0	0	0	0	1	0	0	3275	1195	42	3	7281	3	CEP290	12	88530507	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	30329350	88530507	45321388	80	2715											
CUX2	23316	hgsc.bcm.edu	37	chr12	111747906	111747906	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcacggagcagtcctacccCtcccctcagcagctcccacc	7	5	8	21	1	1	0	1	0	0	0	4	1	4	1	7	2	4	4	7	2	1	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_015267	exon15	c.C1320A	p.P440P	CTACCCCTCCCCT	.	73	4	84	0	.	.	A	111747906	C	A	111747906	2	1	20	1	0	0	0	0	0	0	0	1	4088	668	24	3		3	CUX2	12	111747906	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	23217399	111747906	22103989	81	2716											
PIWIL1	9271	hgsc.bcm.edu;bcgsc.ca	37	chr12	130832683	130832683	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgcaacaaattggacGaaattattataacccaaatg	18	11	6	6	1	0	0	0	0	0	0	0	3	0	1	1	1	3	1	1	1	8	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PIWIL1,NS,carcinoma,0,2	PIWIL1	NM_004764	exon7	c.G689T	p.R230L	TTGGACGAAATTA	.	81	4	60	0	.	0	T	130832683	G	T	130832683	3	4	20	1	0	0	0	0	1	0	0	0	12005	1058	37	2	711	2	PIWIL1	12	130832683	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	19084777	130832683	3019212	82	2717											
POLE	5426	hgsc.bcm.edu;bcgsc.ca	37	chr12	133233951	133233951	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgctgcagggccgcaGggatggtgatgatcttctgg	6	11	15	9	1	2	2	0	2	2	0	2	3	2	3	2	4	3	3	2	4	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_006231	exon28	c.C3443A	p.P1148H	GCCGCAGGGATGG	.	45	4	33	0	.	.	T	133233951	G	T	133233951	3	4	20	1	0	0	0	0	1	0	0	0	12244	1000	35	3	3505	3	POLE	12	133233951	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	2401268	133233951	617944	83	2718											
USPL1	10208	hgsc.bcm.edu	37	chr13	31205413	31205413	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatgtacatcatttccccagGctttatgtgtccagtggaaa	11	13	8	9	0	1	0	1	0	0	0	3	1	3	1	3	2	1	2	3	2	4	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_005800	exon4	c.G670T	p.A224S	CCCCAGGCTTTAT	.	74	3	58	0	.	.	T	31205413	G	T	31205413	3	4	20	1	0	0	0	0	1	0	0	0	17152	1203	42	3	680	3	USPL1	13	31205413	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		31205413	83964465	84	2719											
RFC3	5983	broad.mit.edu;bcgsc.ca	37	chr13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gactccatctaaaaaaaaaaTtgaaattagcaccattgcaa	20	9	4	8	0	1	1	0	1	1	0	2	2	2	1	2	0	2	2	2	0	8	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT	.	212	6	217	0	.	40	A	34398073	T	A	34398073	3	1	20	1	0	0	0	0	1	0	0	0	13298	1493	52	5	255	5	RFC3	13	34398073	Missense_Mutation	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	3192660	34398073	80771805	85	2720											
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	60435664	60435664	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgatctgctgattttgtgtCctttagctaaatagaacagg	10	15	9	7	0	1	3	0	2	1	1	2	3	2	3	1	1	3	2	1	1	5	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001042517	exon22	c.G2614T	p.D872Y	TTGTGTCCTTTAG	.	89	9	75	0	.	.	A	60435664	C	A	60435664	3	1	20	1	0	0	0	0	1	0	0	0	4548	855	30	3	1015	3	DIAPH3	13	60435664	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	26037591	60435664	54734214	86	2721											
KLHL1	57626	hgsc.bcm.edu	37	chr13	70456537	70456537	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gatggtttcttcatcaggaaCattgacatcatcactggcca	11	12	8	10	0	5	1	4	1	1	0	5	3	5	2	1	3	1	1	1	3	1	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	KLHL1,right_lower_lobe,carcinoma,0,1	KLHL1	NM_020866	exon5	c.G1105T	p.V369F	CAGGAACATTGAC	.	24	2	34	0	.	0	A	70456537	C	A	70456537	3	1	20	1	0	0	0	0	1	0	0	0	8408	478	17	3	1169	3	KLHL1	13	70456537	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	10020873	70456537	44713341	87	2722											
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	57268926	57268926	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	gactgaggtgctagagggggGagtgaattggccacttgttc	8	10	17	6	0	0	3	0	2	0	1	1	5	0	4	1	5	1	2	1	5	2	4	rs376333965	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001270525	exon3	c.C421T	p.P141S	AGGGGGGAGTGAA	.	31	12	31	0	.	.	A	57268926	G	A	57268926	3	1	20	1	0	0	0	0	1	0	0	0	11368	1174	41	3	476	3	OTX2	14	57268926	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		57268926	50080614	88	2723											
KIAA0317	0	bcgsc.ca	37	chr14	75179687	75179687	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacctccgctgtcctgggaaGgggcggcagcactcagcaga	8	5	14	14	2	1	1	1	0	0	1	3	2	3	2	3	4	2	4	3	4	1	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	KIAA0317	.	.	.	.	TGGGAAGGGGCGG	.	36	4	54	0	.	68	T	75179687	T	T	75179687	2	4	20	1	0	0	0	0	0	0	0	1	8209	1015	35	3		3	KIAA0317	14	75179687	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	17910761	75179687	32169853	89	2724											
MGA	23269	hgsc.bcm.edu	37	chr15	42046766	42046766	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acacagtcattcaaacagccGtaagtcttatttctctttgg	11	14	6	10	1	4	0	2	0	2	0	5	0	4	0	1	1	2	1	1	1	3	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MGA,NS,carcinoma,0,1	MGA	NM_001080541	exon17	c.6512+1G>A	.	ACAGCCGTAAGTC	.	44	2	44	0	.	0	A	42046766	G	A	42046766	5	1	20	1	0	0	0	0	0	0	1	0	9590	1159	40	1	7206	1	MGA	15	42046766	Splice_Site	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		42046766	60484626	90	2725											
STRC	161497	hgsc.bcm.edu	37	chr15	43893654	43893654	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agcactccccagtccactagGatcagctcctgtagttcccg	8	9	8	16	1	1	0	1	0	0	0	5	1	5	1	5	1	2	4	5	1	2	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	STRC_ENST00000450892,NS,carcinoma,0,1	STRC_ENST00000450892	NM_153700	exon24	c.C4641A	p.I1547I	CACTAGGATCAGC	.	60	3	67	0	.	0	T	43893654	G	T	43893654	2	4	20	1	0	0	0	0	0	0	0	1	15384	1164	41	3		3	STRC	15	43893654	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	1846888	43893654	58637738	91	2726											
COPS2	9318	hgsc.bcm.edu	37	chr15	49420221	49420221	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttatctagtgcagtatatcGtgcaccacccctcttctgat	8	15	6	12	1	3	1	0	1	3	0	4	1	3	1	3	0	2	3	3	0	4	6	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	COPS2,NS,carcinoma,0,1	COPS2	NM_001143887	exon13	c.C1279T	p.R427X	TATATCGTGCACC	.	40	2	37	0	.	0	A	49420221	G	A	49420221	4	1	20	1	0	0	0	0	0	1	0	0	3756	1153	40	1	77	1	COPS2	15	49420221	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	5526567	49420221	53111171	92	2727											
USP8	9101	ucsc.edu	37	chr15	50785016	50785016	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gacttcgtaacttaggaaatActtgttatatgaactcaata	15	14	6	6	1	1	1	1	1	0	0	2	3	1	2	0	1	3	2	0	1	9	8	rs41475144	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	USP8,NS,carcinoma,0,3	USP8	NM_001128610	exon15	c.A2353G	p.T785A	GGAAATACTTGTT	.	37	9	25	1	G|1.000;|0.000	90	G	50785016	A	G	50785016	3	3	20	1	0	0	0	0	1	0	0	0	17149	391	14	4	2407	4	USP8	15	50785016	Missense_Mutation	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	1364795	50785016	51746376	93	2728											
USP8	9101	ucsc.edu	37	chr15	50785054	50785054	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atattgcagtgcctatgtaaCgctccacatttggctgatta	10	14	8	9	1	0	1	0	1	0	0	1	1	1	1	2	1	3	4	2	1	4	6	rs199814360		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	USP8	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	34	8	24	0	.	90	T	50785054	C	T	50785054	2	4	20	1	0	0	0	0	0	0	0	1	17149	535	19	1		1	USP8	15	50785054	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	38	50785054	51746338	94	2729											
CLK3	1198	hgsc.bcm.edu	37	chr15	74922183	74922183	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctttgctggcctgacccctGaggagcggtccttccacacc	5	10	10	16	1	1	2	0	2	1	0	3	3	3	3	6	3	2	1	6	3	0	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLK3_ENST00000454830,NS,carcinoma,0,2	CLK3_ENST00000454830	NM_001130028	exon13	c.G1876T	p.E626X	ACCCCTGAGGAGC	.	24	2	26	0	.	0	T	74922183	G	T	74922183	4	4	20	1	0	0	0	0	0	1	0	0	3561	1291	45	3	1926	3	CLK3	15	74922183	Nonsense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	24137129	74922183	27609209	95	2730											
ANPEP	290	hgsc.bcm.edu	37	chr15	90335685	90335685	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgcaggggagacactcacggGttattattggggttctccat	8	11	13	9	2	2	1	1	0	1	1	3	2	2	1	1	5	0	3	1	5	2	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001150	exon17	c.C2358A	p.N786K	TCACGGGTTATTA	.	47	4	65	0	.	.	T	90335685	G	T	90335685	3	4	20	1	0	0	0	0	1	0	0	0	704	1252	44	3	565	3	ANPEP	15	90335685	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	15413502	90335685	12195707	96	2731											
TSC2	7249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	2126499	2126499	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcactctgccagggcctgcGgtccaatgtcctcttgtctt	4	13	9	15	1	4	0	1	0	3	0	6	0	6	0	4	2	2	0	4	2	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001114382	exon25	c.G2750T	p.R917L	GCCTGCGGTCCAA	.	22	4	28	0	.	.	T	2126499	G	T	2126499	3	4	20	1	0	0	0	0	1	0	0	0	16667	1116	39	2	2844	2	TSC2	16	2126499	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		2126499	88228254	97	2732											
DNAH3	55567	hgsc.bcm.edu	37	chr16	21080893	21080893	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catccaaattgtcttgtatgCgaattagcttttcttcccat	9	17	5	10	1	2	0	0	0	2	0	4	1	4	0	2	0	2	2	2	0	4	7	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	DNAH3_ENST00000261383,NS,carcinoma,-1,2	DNAH3_ENST00000261383	NM_017539	exon23	c.G3224T	p.R1075L	TGTATGCGAATTA	.	44	2	34	0	.	-1	A	21080893	C	A	21080893	3	1	20	1	0	0	0	0	1	0	0	0	4631	768	27	2	9285	2	DNAH3	16	21080893	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	18954394	21080893	69273860	98	2733											
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1384109	1384109	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	agatgtggaagttccgctccCcatgattctggtgcaccact	8	11	10	12	1	1	2	0	1	1	1	3	3	3	3	4	2	1	3	4	2	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001080779	exon6	c.G698T	p.G233V	CGCTCCCCATGAT	.	68	33	79	0	.	.	A	1384109	C	A	1384109	3	1	20	1	0	0	0	0	1	0	0	0	10118	623	22	3	2601	3	MYO1C	17	1384109	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		1384109	79811101	99	2734											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1628548	1628548	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agcgctctgtgcaaaggctgCctgccggctggacgcgcgtg	5	7	16	13	5	1	0	0	0	1	0	1	1	1	1	2	3	4	4	2	3	1	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001163809	exon1	c.C295T	p.P99S	AGGCTGCCTGCCG	.	16	6	17	0	.	.	T	1628548	C	T	1628548	3	4	20	1	0	0	0	0	1	0	0	0	17390	739	26	3	359	3	WDR81	17	1628548	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	244439	1628548	79566662	100	2735											
GPS2	2874	broad.mit.edu;bcgsc.ca	37	chr17	7216378	7216378	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcatctgcacagggagCtggggggaagcaaggagtcc	9	5	18	9	0	1	0	0	0	1	0	2	3	2	3	1	6	4	5	1	6	2	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	GPS2	NM_004489	exon10	c.G870C	p.Q290H	AGGGAGCTGGGGG	.	7	3	18	0	.	44	G	7216378	C	G	7216378	3	3	20	1	0	0	0	0	1	0	0	0	6774	796	28	5	121	5	GPS2	17	7216378	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	5587830	7216378	73978832	101	2736			1	2		3	3	326	C		8.853414e-07
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7216573	7216573	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggttagcatgttccatctgCttttgcaaggacagggcacc	8	12	11	10	0	1	0	0	0	1	0	2	1	2	1	2	3	3	6	2	3	2	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004489	exon9	c.G762T	p.K254N	CATCTGCTTTTGC	.	38	19	33	0	.	.	A	7216573	C	A	7216573	3	1	20	1	0	0	0	0	1	0	0	0	6774	796	28	3	233	3	GPS2	17	7216573	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	195	7216573	73978637	102	2737			1	2		3	3	326	C		8.853414e-07
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7216703	7216703	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	catgggatgttatcacctgtCtgagtgggctgaaagtggcc	8	11	14	8	0	2	2	1	2	1	0	2	3	2	3	2	3	0	2	2	3	2	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004489	exon8	c.G720C	p.Q240H	ACCTGTCTGAGTG	.	28	14	41	0	.	.	G	7216703	C	G	7216703	3	3	20	1	0	0	0	0	1	0	0	0	6774	912	32	5	279	5	GPS2	17	7216703	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	130	7216703	73978507	103	2738			1	2		3	3	326	C		8.853414e-07
CHD3	1107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	7798770	7798770	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	aatccagatgtcccacccccCcgtcctcttcaaggcagatc	9	8	6	18	1	2	2	1	0	1	2	6	2	5	2	6	1	0	1	6	1	2	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001005271	exon10	c.C1794T	p.P598P	ACCCCCCCGTCCT	.	27	4	43	0	.	.	T	7798770	C	T	7798770	2	4	20	1	0	0	0	0	0	0	0	1	3348	610	22	3		3	CHD3	17	7798770	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	582067	7798770	73396440	104	2739											
MYH13	8735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	10215287	10215287	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggtccaccacctcctcatagGcattcctcatcttgaagagt	9	11	7	14	0	3	2	2	1	1	1	6	2	6	2	5	2	0	1	5	2	2	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003802	exon32	c.C4472T	p.A1491V	TCATAGGCATTCC	.	33	4	36	0	.	.	A	10215287	G	A	10215287	3	1	20	1	0	0	0	0	1	0	0	0	10080	1203	42	3	1384	3	MYH13	17	10215287	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	2416517	10215287	70979923	105	2740											
CDC27	996	hgsc.bcm.edu	37	chr17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtgtttccgtaagaaCtgtctcaggctgtctgtgag	6	13	14	8	1	2	2	1	1	2	1	4	2	3	2	1	3	1	3	1	3	2	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon6	c.G601A	p.V201I	TAAGAACTGTCTC	.	50	6	55	1	.	0	T	45234625	C	T	45234625	3	4	20	1	0	0	0	0	1	0	0	0	3088	565	20	3	1947	3	CDC27	17	45234625	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	35019338	45234625	35960585	106	2741											
ITGB3	3690	ucsc.edu	37	chr17	45368459	45368459	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caagattggagacacggtgaGgtgggctgggcagggccttt	8	8	18	7	1	0	3	0	1	0	2	0	4	0	3	1	6	0	2	1	6	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ITGB3	.	.	.	.	CGGTGAGGTGGGC	.	25	4	33	0	.	157	T	45368459	G	T	45368459	3	4	20	1	0	0	0	0	1	0	0	0	7939	1015	35	3		3	ITGB3	17	45368459	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	133834	45368459	35826751	107	2742											
BCAS3	54828	hgsc.bcm.edu	37	chr17	59112151	59112151	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caggtctgaaaagagaaaaaGgtatgtatttttactgaaaa	18	11	9	3	0	1	3	0	2	1	1	1	4	1	3	0	2	1	2	0	2	9	5	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001099432	exon18	c.G1807T	p.D603Y	GAAAAAGGTATGT	.	74	4	47	0	.	.	T	59112151	G	T	59112151	3	4	20	1	0	0	0	0	1	0	0	0	1350	1014	35	3	1873	3	BCAS3	17	59112151	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	13743692	59112151	22083059	108	2743											
PTPN2	5771	hgsc.bcm.edu	37	chr18	12802116	12802116	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatgatcaaaggcaggaGataagtcttccttagaaagt	15	10	11	5	0	2	4	1	2	1	2	3	5	3	4	1	2	0	1	1	2	5	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PTPN2,colon,carcinoma,0,1	PTPN2	NM_001207013	exon9	c.C962A	p.S321Y	GCAGGAGATAAGT	.	49	3	46	0	.	0	T	12802116	G	T	12802116	3	4	20	1	0	0	0	0	1	0	0	0	12835	942	33	3	388	3	PTPN2	18	12802116	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		12802116	65275132	109	2744											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558341	11558341	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cagtgccctcgtcgcccacaGaggaggaggaggaggaggag	10	3	18	10	2	0	1	0	0	0	1	2	7	0	7	2	6	1	0	2	6	0	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.,2	.	NM_001001329	exon11	c.G937C	p.E313Q	CCCACAGAGGAGG	.	29	3	22	1	.	55	C	11558341	G	C	11558341	3	2	20	1	0	0	0	0	1	0	0	0	12568	943	33	5	975	5	PRKCSH	19	11558341	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		11558341	47570642	110	2745											
PRKCSH	5589	bcgsc.ca	37	chr19	11560245	11560245	+	Splice_Site	SNP	T	G	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagctggatgggcgcagaggTgggcggggaggtggagtctc	6	7	22	6	2	1	1	0	0	1	1	2	4	1	4	0	8	1	2	0	8	1	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PRKCSH	NM_002743	exon17	c.1603+2T>G	.	CAGAGGTGGGCGG	.	16	12	22	2	.	55	G	11560245	G	G	11560245	5	3	20	1	0	0	0	0	0	0	1	0	12568	1710	59	4		4	PRKCSH	19	11560245	Splice_Site	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	1904	11560245	47568738	111	2746											
OR10H4	126541	hgsc.bcm.edu	37	chr19	16060516	16060516	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atcttgaggattccctctgcCgaaggccggcacaagacatt	10	9	10	12	2	2	2	0	1	2	1	3	4	3	3	3	3	1	1	3	3	2	3	rs370722157		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	OR10H4,NS,carcinoma,0,1	OR10H4	NM_001004465	exon1	c.C699T	p.A233A	CTCTGCCGAAGGC	.	41	2	30	0	.	0	T	16060516	C	T	16060516	2	4	20	1	0	0	0	0	0	0	0	1	10956	639	23	1		1	OR10H4	19	16060516	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	4500271	16060516	43068467	112	2747											
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	chr19	19765461	19765461	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tggcacgaggccagggcccgGtgtgtttctacagggatgct	6	9	16	10	2	1	0	0	0	1	0	1	2	1	1	2	5	2	3	2	5	1	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ATP13A1	NM_020410	exon13	c.C1704T	p.H568H	GGCCCGGTGTGTT	.	26	4	29	0	.	82	A	19765461	G	A	19765461	2	1	20	1	0	0	0	0	0	0	0	1	1122	1252	44	3		3	ATP13A1	19	19765461	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	3704945	19765461	39363522	113	2748											
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21910728	21910728	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catattttttcagaatcgctTcttgaaaagaatctttaatg	13	17	5	6	1	3	3	1	1	2	2	4	3	3	3	0	0	0	1	0	0	6	8	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_173531	exon5	c.A386T	p.E129V	ATCGCTTCTTGAA	.	45	21	78	0	.	.	A	21910728	T	A	21910728	3	1	20	1	0	0	0	0	1	0	0	0	17771	1783	62	5	1246	5	ZNF100	19	21910728	Missense_Mutation	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	2145267	21910728	37218255	114	2749											
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44417593	44417593	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagtccttgtcaccctcAtcatcagcatggactcgctg	9	10	9	13	1	4	0	4	0	0	0	6	2	5	2	2	2	1	2	2	2	1	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003425	exon10	c.T1995C	p.D665D	ACCCTCATCATCA	.	53	22	37	0	.	.	G	44417593	A	G	44417593	2	3	20	1	0	0	0	0	0	0	0	1	17978	214	8	4		4	ZNF45	19	44417593	Silent	SNP	A	TCGA-W5-AA31-01A-11D-A417-09	22506865	44417593	14711390	115	2750											
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	48565379	48565379	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaggtggaggtgcttcCggctgctcattatcttgtcc	5	12	11	13	1	2	0	1	0	1	0	4	1	4	1	4	4	2	3	4	4	1	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001159322	exon14	c.G1163A	p.R388Q	TGCTTCCGGCTGC	.	35	5	27	0	.	.	T	48565379	C	T	48565379	3	4	20	1	0	0	0	0	1	0	0	0	12051	652	23	1	512	1	PLA2G4C	19	48565379	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	4147786	48565379	10563604	116	2751											
GYS1	2997	hgsc.bcm.edu	37	chr19	49473939	49473939	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcaggaatcatccaggctgCggaaccgccggtcaagaatg	12	5	13	11	3	2	1	2	0	0	1	3	3	3	3	3	4	3	2	3	4	4	0	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_002103	exon14	c.G1673A	p.R558H	AGGCTGCGGAACC	.	99	3	96	0	.	.	T	49473939	C	T	49473939	3	4	20	1	0	0	0	0	1	0	0	0	6953	768	27	1	552	1	GYS1	19	49473939	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	908560	49473939	9655044	117	2752											
BMP2	650	broad.mit.edu	37	chr20	6759625	6759625	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctaagattcctaaggcatgCtgtgtcccgacagaactcag	11	10	9	11	1	2	2	1	0	1	2	4	3	4	2	2	1	2	2	2	1	3	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	BMP2	NM_001200	exon3	c.C1080T	p.C360C	GGCATGCTGTGTC	.	29	3	41	0	.	45	T	6759625	C	T	6759625	2	4	20	1	0	0	0	0	0	0	0	1	1458	805	28	3		3	BMP2	20	6759625	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		6759625	56265895	118	2753											
FLRT3	23767	hgsc.bcm.edu	37	chr20	14307246	14307246	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaataccagggattgttgcGaagaatcagttgtgttatat	12	13	11	5	1	1	1	1	0	0	1	1	3	1	2	1	1	2	4	1	1	6	6	rs150799973	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	FLRT3,colon,carcinoma,0,1	FLRT3	NM_013281	exon2	c.C907A	p.R303S	TGTTGCGAAGAAT	.	45	2	34	0	.	0	T	14307246	G	T	14307246	3	4	20	1	0	0	0	0	1	0	0	0	5973	1058	37	2	1046	2	FLRT3	20	14307246	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	7547621	14307246	48718274	119	2754											
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35315979	35315979	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgggtgatctcttgcataTcctcaaagttaaagaatgca	12	12	9	8	0	2	2	1	1	1	1	4	2	3	2	1	1	2	4	1	1	5	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_032013	exon5	c.A236G	p.D79G	TGCATATCCTCAA	.	62	25	53	0	.	.	C	35315979	T	C	35315979	3	2	20	1	0	0	0	0	1	0	0	0	10300	1435	50	4	939	4	NDRG3	20	35315979	Missense_Mutation	SNP	T	TCGA-W5-AA31-01A-11D-A417-09	21008733	35315979	27709541	120	2755											
SNX21	90203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44463735	44463735	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ccagcgctaacgttgtcaagGacccgccctccaagtacgtg	9	7	10	15	4	1	0	1	0	0	0	2	1	2	1	4	1	3	3	4	1	4	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_033421	exon3	c.G427A	p.D143N	GTCAAGGACCCGC	.	26	8	19	0	.	.	A	44463735	G	A	44463735	3	1	20	1	0	0	0	0	1	0	0	0	14947	1174	41	3	437	3	SNX21	20	44463735	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	9147756	44463735	18561785	121	2756											
CSE1L	1434	bcgsc.ca	37	chr20	47712955	47712955	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccaagggtaccttcaggcaGccagtgtgacactgctttaa	10	10	10	11	0	1	1	1	1	0	0	2	1	2	1	3	2	3	3	3	2	3	4	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CSE1L	NM_001316	exon25	c.G2896T	p.A966S	CAGGCAGCCAGTG	.	49	4	30	0	.	83	T	47712955	T	T	47712955	3	4	20	1	0	0	0	0	1	0	0	0	3955	971	34	3	2990	3	CSE1L	20	47712955	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	3249220	47712955	15312565	122	2757											
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50290700	50290700	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tcgcctgcttacctaatgggGatgatgttggaaaacaagag	12	10	12	7	1	0	2	0	1	0	1	1	4	0	4	2	3	3	2	2	3	5	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ATP9A,NS,malignant_melanoma,0,2	ATP9A	NM_006045	exon11	c.C1029T	p.I343I	AATGGGGATGATG	.	39	8	35	0	.	0	A	50290700	G	A	50290700	2	1	20	1	0	0	0	0	0	0	0	1	1196	1164	41	3		3	ATP9A	20	50290700	Silent	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	2577745	50290700	12734820	123	2758											
CARD10	29775	bcgsc.ca	37	chr22	37888537	37888537	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggcgctgaggatgggcacaGttcctccccagagaggcttt	8	8	14	11	1	0	2	0	1	0	1	2	4	2	3	3	4	0	4	3	4	0	2	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CARD10	NM_014550	exon18	c.C2656A	p.L886M	GGCACAGTTCCTC	.	59	4	56	0	.	55	T	37888537	T	T	37888537	3	4	20	1	0	0	0	0	1	0	0	0	2662	1020	36	3	454	3	CARD10	22	37888537	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09		37888537	13416029	124	2759											
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38120876	38120876	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	caagagaacctcagaacatcCtgtacccgacaggacaatcc	15	5	7	14	1	1	2	1	0	0	2	3	5	3	3	4	1	3	1	4	1	5	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001039141	exon7	c.C2313A	p.S771S	AACATCCTGTACC	.	82	3	82	0	.	.	A	38120876	C	A	38120876	2	1	20	1	0	0	0	0	0	0	0	1	16614	668	24	3		3	TRIOBP	22	38120876	Silent	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	232339	38120876	13183690	125	2760											
XAGE3	170626	hgsc.bcm.edu;bcgsc.ca	37	chrX	52893878	52893878	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caggaccatttccacattcaCccccagtctttgactgagac	10	10	6	15	0	2	2	1	2	1	1	3	4	3	3	4	1	0	0	4	1	0	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_133179	exon4	c.G239A	p.G80D	CATTCACCCCCAG	.	51	4	31	0	.	.	T	52893878	C	T	52893878	3	4	20	1	0	0	0	0	1	0	0	0	17480	507	18	3	104	3	XAGE3	23	52893878	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09		52893878	102376682	126	2761											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	79941034	79941034	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctccctcttgctcctgatgaCcctattagggtgaagaacat	9	12	8	12	0	1	4	0	3	1	1	3	4	3	4	3	1	2	1	3	1	4	3	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_153252	exon36	c.G4007C	p.G1336A	TGATGACCCTATT	.	51	34	36	0	.	.	G	79941034	C	G	79941034	3	3	20	1	0	0	0	0	1	0	0	0	1528	521	18	5	1425	5	BRWD3	23	79941034	Missense_Mutation	SNP	C	TCGA-W5-AA31-01A-11D-A417-09	27047156	79941034	75329526	127	2762											
GPC3	2719	bcgsc.ca	37	chrX	133119350	133119350	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtccgggctgcagtctctGgaagaaggagcggacttggt	8	8	17	8	2	1	1	0	0	1	1	3	5	2	4	1	5	2	2	1	5	2	1	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	GPC3	NM_001164617	exon1	c.C127A	p.Q43K	GTCTCTGGAAGAA	.	57	4	60	0	.	88	T	133119350	T	T	133119350	3	4	20	1	0	0	0	0	1	0	0	0	6639	1357	47	3	1720	3	GPC3	23	133119350	Missense_Mutation	SNP	G	TCGA-W5-AA31-01A-11D-A417-09	53178316	133119350	22151210	128	2763											
ID3	3399	ucsc.edu;bcgsc.ca	37	chr1	23885891	23885891	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcacaccgcctcgtagcaGccgcgcaccgggctcagcgc	7	3	12	19	6	1	0	1	0	0	0	2	0	1	0	4	1	4	5	4	1	1	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ID3	NM_002167	exon1	c.C27A	p.G9G	GTAGCAGCCGCGC	.	27	4	40	0	.	29	T	23885891	G	T	23885891	2	4	21	1	0	0	0	0	0	0	0	1	7535	958	34	3		3	ID3	1	23885891	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		23885891	225364730	1	2764											
CYP4A22	284541	hgsc.bcm.edu	37	chr1	47608985	47608985	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggattcccctctggaggtCtttcagcacgtctccttgat	6	13	9	13	1	4	1	1	1	3	0	6	3	5	3	3	3	1	1	3	3	0	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP4A22,colon,carcinoma,0,1	CYP4A22	NM_001010969	exon5	c.C555A	p.V185V	GGAGGTCTTTCAG	.	38	2	53	0	.	0	A	47608985	C	A	47608985	2	1	21	1	0	0	0	0	0	0	0	1	4207	900	32	3		3	CYP4A22	1	47608985	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	23723094	47608985	201641636	2	2765											
DAB1	1600	hgsc.bcm.edu	37	chr1	57480714	57480714	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggagggctggtcgggtttgCgggagggcacgggcggaggc	4	5	25	7	4	0	0	0	0	0	0	1	3	0	3	0	9	1	3	0	9	0	1	rs144347021		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DAB1,colon,carcinoma,0,3	DAB1	NM_021080	exon14	c.G1286A	p.R429H	GGTTTGCGGGAGG	.	39	3	26	0	0.000	0	T	57480714	C	T	57480714	3	4	21	1	0	0	0	0	1	0	0	0	4241	768	27	1	393	1	DAB1	1	57480714	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	9871729	57480714	191769907	3	2766											
C1orf173	127254	hgsc.bcm.edu	37	chr1	75039126	75039126	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	accaattgctgggattccttGtttgagttgattgctgctgt	6	17	11	7	0	0	2	0	2	0	0	1	3	1	3	2	1	3	5	2	1	1	6	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	C1orf173,right_upper_lobe,carcinoma,0,1	C1orf173	NM_001002912	exon14	c.C2268A	p.N756K	TTCCTTGTTTGAG	.	21	2	38	0	.	0	T	75039126	G	T	75039126	3	4	21	1	0	0	0	0	1	0	0	0	2027	1368	48	3	2328	3	C1orf173	1	75039126	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	17558412	75039126	174211495	4	2767											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	153907309	153907309	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgctgctgctgctgttgccg	0	15	14	12	1	0	0	0	0	0	0	0	0	0	0	1	0	11	12	1	0	0	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B_ENST00000361217	NM_014856	exon18	c.G2700A	p.Q900Q	CTGTTGCTGCTGC	.	24	4	19	0	.	0	T	153907309	C	T	153907309	2	4	21	1	0	0	0	0	0	0	0	1	4462	796	28	3		3	DENND4B	1	153907309	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	78868183	153907309	95343312	5	2768											
ABL2	27	hgsc.bcm.edu;ucsc.edu	37	chr1	179077425	179077425	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcagatggacggatgctgcaGtagtctcatcactggtggtg	8	10	15	8	1	2	1	2	0	1	1	3	3	2	3	0	4	2	4	0	4	1	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_007314	exon12	c.C2977T	p.L993L	GCTGCAGTAGTCT	.	32	4	19	0	.	.	A	179077425	G	A	179077425	2	1	21	1	0	0	0	0	0	0	0	1	93	1020	36	3		3	ABL2	1	179077425	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	25170116	179077425	70173196	6	2769											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181701852	181701852	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaggacccctttgtccctggGccagcgggagccaccatggc	6	6	14	15	1	0	0	0	0	0	0	1	3	1	2	6	4	2	0	6	4	0	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001205293	exon20	c.G2630A	p.G877D	CCCTGGGCCAGCG	.	62	20	39	0	.	.	A	181701852	G	A	181701852	3	1	21	1	0	0	0	0	1	0	0	0	2560	1203	42	3	2708	3	CACNA1E	1	181701852	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	2624427	181701852	67548769	7	2770											
URB2	9816	hgsc.bcm.edu	37	chr1	229779333	229779333	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttgagcctcatttgggagccTtgttcacccaaatgttagag	9	13	10	9	0	2	2	2	1	0	1	2	3	2	3	3	1	2	2	3	1	2	5	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	URB2,colon,carcinoma,0,1	URB2	NM_014777	exon5	c.T3688C	p.L1230L	GGAGCCTTGTTCA	.	39	2	41	0	.	0	C	229779333	T	C	229779333	2	2	21	1	0	0	0	0	0	0	0	1	17085	1606	56	4		4	URB2	1	229779333	Silent	SNP	T	TCGA-W5-AA33-01A-11D-A417-09	48077481	229779333	19471288	8	2771											
OR1C1	26188	hgsc.bcm.edu	37	chr1	247920861	247920861	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agatgaaaggattcagcatcGgagccaccattgaatacatg	15	8	10	8	1	1	3	1	2	0	1	2	5	1	5	2	2	3	1	2	2	3	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	OR1C1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	OR1C1	NM_012353	exon1	c.C848T	p.P283L	AGCATCGGAGCCA	.	21	3	38	0	.	0	A	247920861	G	A	247920861	3	1	21	1	0	0	0	0	1	0	0	0	11000	1116	39	1	98	1	OR1C1	1	247920861	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	18141528	247920861	1329760	9	2772											
OTOF	9381	broad.mit.edu	37	chr2	26693554	26693556	+	In_Frame_Del	DEL	CTT	CTT	-																															tctggctcctccgcagtgccCttcttcttcttcttcttctc																								novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	OTOF	NM_194248	exon32	c.3928_3930del	p.1310_1310del	AGTGCCCTTCTTC	.	6	2	5	0	.	524	-	26693556	CTT	-	26693554	7	5	21	1	0	1	0	1	0	0	0	0	11350	680	24	0	2308	0	OTOF	2	26693554	In_Frame_Del	DEL	CTT	TCGA-W5-AA33-01A-11D-A417-09		26693554	216505819	10	2773											
CLIP4	79745	hgsc.bcm.edu;bcgsc.ca	37	chr2	29397281	29397281	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aacttctgcttcttcccaaaAggagattaacagaagaaatg	16	10	7	8	0	2	3	0	0	2	3	3	4	3	3	1	1	3	1	1	1	6	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_024692	exon15	c.A1766G	p.K589R	CCCAAAAGGAGAT	.	90	4	102	0	.	.	G	29397281	A	G	29397281	3	3	21	1	0	0	0	0	1	0	0	0	3558	72	3	4	1820	4	CLIP4	2	29397281	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09	2703727	29397281	213802092	11	2774											
ZC3H6	376940	hgsc.bcm.edu;bcgsc.ca	37	chr2	113069514	113069514	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtatcggatgactttcaagaGgtactaagaatttatgtata	14	14	9	4	1	1	3	1	1	0	2	2	4	1	4	0	2	1	3	0	2	8	8	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_198581	exon5	c.G747T	p.E249D	TCAAGAGGTACTA	.	81	4	75	0	.	.	T	113069514	G	T	113069514	3	4	21	1	0	0	0	0	1	0	0	0	17630	1014	35	3	765	3	ZC3H6	2	113069514	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	83672233	113069514	130129859	12	2775											
CNTNAP5	129684	hgsc.bcm.edu	37	chr2	125175026	125175026	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttcttctctgcagacctttGcaggaaacatgaatgctgac	10	13	8	10	0	2	3	0	2	2	1	3	4	2	4	1	1	4	3	1	1	2	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CNTNAP5,right_upper_lobe,carcinoma,0,1	CNTNAP5	NM_130773	exon4	c.G388T	p.A130S	ACCTTTGCAGGAA	.	28	2	36	0	.	0	T	125175026	G	T	125175026	3	4	21	1	0	0	0	0	1	0	0	0	3673	1319	46	3	402	3	CNTNAP5	2	125175026	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	12105512	125175026	118024347	13	2776											
DARS	1615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136664945	136664945	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtctgacgaacattatgcaAtcccagaaacagcatagtaa	16	8	8	9	1	1	2	0	1	1	1	2	3	2	2	1	1	4	3	1	1	6	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001349	exon16	c.T1447C	p.L483L	TATGCAATCCCAG	.	64	16	70	0	.	.	G	136664945	A	G	136664945	2	3	21	1	0	0	0	0	0	0	0	1	4265	98	4	4		4	DARS	2	136664945	Silent	SNP	A	TCGA-W5-AA33-01A-11D-A417-09	11489919	136664945	106534428	14	2777											
SPHKAP	80309	hgsc.bcm.edu	37	chr2	228996762	228996762	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccacagcctctgccctgctgCggttccaaaacgtcatacat	9	9	7	16	2	2	0	1	0	1	0	3	0	3	0	4	1	6	2	4	1	3	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP_ENST00000392056	NM_030623	exon2	c.G72A	p.P24P	CTGCTGCGGTTCC	.	41	2	46	0	.	0	T	228996762	C	T	228996762	2	4	21	1	0	0	0	0	0	0	0	1	15104	755	27	1		1	SPHKAP	2	228996762	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	92331817	228996762	14202611	15	2778											
PLCL2	23228	hgsc.bcm.edu	37	chr3	17084422	17084422	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gatgctgtatatgaaaagatCgtacattgtcagaaggcagg	14	10	12	5	1	1	3	1	1	0	2	2	4	1	3	0	2	2	4	0	2	6	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015184	exon4	c.C2697T	p.I899I	AAAGATCGTACAT	.	69	3	77	0	.	.	T	17084422	C	T	17084422	2	4	21	1	0	0	0	0	0	0	0	1	12088	874	31	1		1	PLCL2	3	17084422	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		17084422	180938008	16	2779											
SMARCC1	6599	hgsc.bcm.edu	37	chr3	47702803	47702803	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcttctctggctcatcGggccctgtgcctgcaatgca	6	10	10	15	1	2	0	1	0	1	0	4	0	2	0	3	2	4	4	3	2	2	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SMARCC1,mouth,carcinoma,0,1	SMARCC1	NM_003074	exon21	c.C2301A	p.P767P	CTCATCGGGCCCT	.	25	2	30	0	.	0	T	47702803	G	T	47702803	2	4	21	1	0	0	0	0	0	0	0	1	14829	1103	39	2		2	SMARCC1	3	47702803	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	30618381	47702803	150319627	17	2780											
STAB1	23166	hgsc.bcm.edu;ucsc.edu	37	chr3	52536050	52536050	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggggcgctgagaccccatgCaatggccacgggacctgctt	7	6	15	13	2	0	1	0	1	0	1	0	3	0	2	4	4	2	3	4	4	1	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015136	exon4	c.C360A	p.C120X	CCCATGCAATGGC	.	20	4	37	0	.	.	A	52536050	C	A	52536050	4	1	21	1	0	0	0	0	0	1	0	0	15293	718	25	3	374	3	STAB1	3	52536050	Nonsense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	4833247	52536050	145486380	18	2781											
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	62268423	62268423	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atgactatgtcttagaagttCggcactttcagtgtcccaaa	11	13	8	9	1	2	2	1	1	1	1	4	2	3	2	1	1	0	2	1	1	4	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_002841	exon28	c.C3934T	p.R1312W	GAAGTTCGGCACT	.	53	8	64	0	.	.	T	62268423	C	T	62268423	3	4	21	1	0	0	0	0	1	0	0	0	12854	875	31	1	4044	1	PTPRG	3	62268423	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	9732373	62268423	135754007	19	2782											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108147371	108147371	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catctgctcaacacgggtcaGgaggtcatctacttctagct	9	11	9	12	1	6	0	3	0	3	0	6	1	6	1	0	3	4	2	0	3	3	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_014981	exon28	c.C3730A	p.L1244M	GGGTCAGGAGGTC	.	42	4	44	0	.	.	T	108147371	G	T	108147371	3	4	21	1	0	0	0	0	1	0	0	0	10082	991	35	3	2170	3	MYH15	3	108147371	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	45878948	108147371	89875059	20	2783											
BOC	91653	broad.mit.edu	37	chr3	113002290	113002290	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctggccagcctggtcgactgCcacccccaactctggcccca	6	6	9	20	1	1	0	0	0	1	0	2	1	1	0	7	3	3	0	7	3	1	0	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	BOC	NM_033254	exon16	c.C2464T	p.P822S	CGACTGCCACCCC	.	28	3	39	0	.	139	T	113002290	C	T	113002290	3	4	21	1	0	0	0	0	1	0	0	0	1480	739	26	3	2518	3	BOC	3	113002290	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	4854919	113002290	85020140	21	2784											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	113724730	113724730	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaagttgcctgttgttGttcttcccaggggaggactg	5	13	13	10	0	1	0	0	0	1	0	2	2	2	2	3	3	2	5	3	3	1	5	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_020817	exon10	c.C1493A	p.T498K	GTTGTTGTTCTTC	.	17	4	8	0	.	.	T	113724730	G	T	113724730	3	4	21	1	0	0	0	0	1	0	0	0	8271	1377	48	3	1349	3	KIAA1407	3	113724730	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	722440	113724730	84297700	22	2785											
MFSD1	64747	hgsc.bcm.edu	37	chr3	158538046	158538046	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tgtaaaggacttctccttacCcctgtggcttatatttatca	9	16	6	10	0	2	0	1	0	1	0	3	1	2	1	3	2	1	2	3	2	6	7	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_022736	exon9	c.C941T	p.P314L	CCTTACCCCTGTG	.	78	3	89	0	.	.	T	158538046	C	T	158538046	3	4	21	1	0	0	0	0	1	0	0	0	9577	623	22	3	975	3	MFSD1	3	158538046	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	44813316	158538046	39484384	23	2786											
ANKRD17	26057	hgsc.bcm.edu	37	chr4	73943167	73943167	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actatctcgctccattgcttGatgttgtgaaaatactcctg	9	15	7	10	1	1	2	0	2	1	0	4	2	3	2	2	0	2	3	2	0	4	5	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	ANKRD17,NS,carcinoma,0,1	ANKRD17	NM_032217	exon32	c.C7492A	p.Q2498K	TTGCTTGATGTTG	.	46	2	45	0	.	0	T	73943167	G	T	73943167	3	4	21	1	0	0	0	0	1	0	0	0	642	1299	45	3	331	3	ANKRD17	4	73943167	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		73943167	117211109	24	2787											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811971	140811971	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aggcagtggcatgttactggGcaaattgttgatggcttcca	9	12	13	7	0	0	1	0	1	0	0	1	1	1	1	1	4	1	6	1	4	2	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	MAML3_ENST00000509479,NS,carcinoma,0,2	MAML3_ENST00000509479	NM_018717	exon2	c.C619T	p.P207S	TACTGGGCAAATT	.	61	3	54	0	.	0	A	140811971	G	A	140811971	3	1	21	1	0	0	0	0	1	0	0	0	9257	1203	42	3	2805	3	MAML3	4	140811971	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	66868804	140811971	50342305	25	2788											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	13919410	13919410	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgctccagctccgctcGtggcccaacgtcatccgctt	5	9	9	18	4	1	0	1	0	0	0	5	0	4	0	5	1	3	4	5	1	1	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DNAH5,NS,carcinoma,0,1	DNAH5	NM_001369	exon7	c.C850T	p.R284X	CCGCTCGTGGCCC	.	14	6	37	0	.	0	A	13919410	G	A	13919410	4	1	21	1	0	0	0	0	0	1	0	0	4632	1153	40	1	13316	1	DNAH5	5	13919410	Nonsense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		13919410	166995850	26	2789											
PLCXD3	345557	ucsc.edu;bcgsc.ca	37	chr5	41510580	41510580	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	catgctctccggcagagttgCcatccagtcggctaatttca	8	11	9	13	2	2	1	1	0	1	1	5	1	3	1	3	2	2	4	3	2	1	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	PLCXD3	NM_001005473	exon1	c.G49A	p.A17T	GAGTTGCCATCCA	.	24	4	29	0	.	86	T	41510580	C	T	41510580	3	4	21	1	0	0	0	0	1	0	0	0	12091	739	26	3	928	3	PLCXD3	5	41510580	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	27591170	41510580	139404680	27	2790											
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	chr5	115782915	115782915	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctcattttgggctggtccacGtactcatgctggtagccctg	5	13	11	12	1	2	0	2	0	0	0	3	0	3	0	2	3	3	4	2	3	2	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SEMA6A	NM_020796	exon19	c.C2487T	p.Y829Y	GTCCACGTACTCA	.	19	3	22	0	.	93	A	115782915	G	A	115782915	2	1	21	1	0	0	0	0	0	0	0	1	14093	1140	40	1		1	SEMA6A	5	115782915	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	74272335	115782915	65132345	28	2791											
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140202795	140202795	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatcttcacggtgtctgcaCgggacgcggacgcgcaggag	8	6	15	12	6	3	0	1	0	2	0	3	3	3	3	0	4	1	2	0	4	0	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_018908	exon1	c.C1435T	p.R479W	TCTGCACGGGACG	.	90	17	99	0	.	.	T	140202795	C	T	140202795	3	4	21	1	0	0	0	0	1	0	0	0	11574	527	19	1	1437	1	PCDHA5	5	140202795	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	24419880	140202795	40712465	29	2792											
IFNGR1	3459	hgsc.bcm.edu	37	chr6	137525607	137525607	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atcatgatttgcttctcctcCtttctgatatccagtttagg	7	18	6	10	0	3	2	1	2	2	0	6	2	5	2	3	1	1	2	3	1	2	6	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	IFNGR1,NS,carcinoma,0,1	IFNGR1	NM_000416	exon4	c.G408T	p.K136N	CTCCTCCTTTCTG	.	39	3	42	0	.	0	A	137525607	C	A	137525607	3	1	21	1	0	0	0	0	1	0	0	0	7593	680	24	3	1077	3	IFNGR1	6	137525607	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		137525607	33589460	30	2793											
C6orf70	55780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	170179308	170179308	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ctgtcccctgtgctcagcctGatactgttactcattgcgct	5	14	8	14	1	2	1	2	1	0	0	3	1	3	1	3	0	5	3	3	0	2	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	C6orf70,NS,carcinoma,0,1	C6orf70	NM_018341	exon17	c.G1770C	p.L590L	CAGCCTGATACTG	.	19	5	40	0	.	0	C	170179308	G	C	170179308	2	2	21	1	0	0	0	0	0	0	0	1	2385	1277	45	5		5	C6orf70	6	170179308	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	32653701	170179308	935759	31	2794											
STK31	56164	hgsc.bcm.edu	37	chr7	23826512	23826512	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccctagggcaaacctgaatgCtgttcaagccaacatgcctt	11	9	8	13	0	1	1	1	1	0	0	1	1	1	1	4	1	5	3	4	1	5	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	STK31,NS,carcinoma,0,1	STK31	NM_031414	exon20	c.C2456T	p.A819V	TGAATGCTGTTCA	.	49	2	57	0	.	0	T	23826512	C	T	23826512	3	4	21	1	0	0	0	0	1	0	0	0	15352	797	28	3	2534	3	STK31	7	23826512	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		23826512	135312151	32	2795											
FZD1	8321	hgsc.bcm.edu	37	chr7	90896134	90896134	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacaaggggagactacaGtctgagacccggggctcagc	12	4	14	11	1	2	2	1	1	1	2	2	4	2	2	1	4	3	2	1	4	3	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	FZD1,bladder,carcinoma,-2,1	FZD1	NM_003505	exon1	c.G1939T	p.V647F	ACTACAGTCTGAG	.	37	2	56	0	.	-2	T	90896134	G	T	90896134	3	4	21	1	0	0	0	0	1	0	0	0	6163	1029	36	3	1941	3	FZD1	7	90896134	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	67069622	90896134	68242529	33	2796											
DLX5	1749	hgsc.bcm.edu	37	chr7	96653802	96653802	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgtagggctgtagtagtcaGaatcggtagctgaagactcg	10	9	14	8	3	1	3	1	1	0	2	3	3	1	3	1	2	1	6	1	2	6	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DLX5,colon,carcinoma,0,1	DLX5	NM_005221	exon1	c.C134A	p.S45Y	TAGTCAGAATCGG	.	43	2	56	0	.	0	T	96653802	G	T	96653802	3	4	21	1	0	0	0	0	1	0	0	0	4602	942	33	3	747	3	DLX5	7	96653802	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	5757668	96653802	62484861	34	2797											
DENND2A	27147	hgsc.bcm.edu	37	chr7	140246698	140246698	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctcatgagtggctgaaccagGgcaggagagatgcctcgtct	9	8	14	10	1	2	3	1	2	1	1	3	5	2	4	2	3	2	2	2	3	1	0	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DENND2A,right_upper_lobe,carcinoma,0,1	DENND2A	NM_015689	exon11	c.C2079A	p.A693A	AACCAGGGCAGGA	.	26	2	33	0	.	0	T	140246698	G	T	140246698	2	4	21	1	0	0	0	0	0	0	0	1	4457	1219	43	3		3	DENND2A	7	140246698	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	43592896	140246698	18891965	35	2798											
ZYX	7791	hgsc.bcm.edu;broad.mit.edu	37	chr7	143079401	143079401	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	cgatgcagagggtgctctggGaggtgccttcccgccgcccc	4	7	15	15	3	1	1	0	0	1	1	2	3	2	2	5	3	3	2	5	3	0	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_003461	exon3	c.G269A	p.G90E	CTCTGGGAGGTGC	.	26	4	35	0	.	.	A	143079401	G	A	143079401	3	1	21	1	0	0	0	0	1	0	0	0	18294	1174	41	3	275	3	ZYX	7	143079401	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	2832703	143079401	16059262	36	2799											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	149473162	149473162	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccctcctctttgggatggCgtgggccctggctgacgggt	2	11	16	12	2	1	1	0	1	1	0	2	2	2	2	3	5	1	1	3	5	0	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_198455	exon1	c.C32T	p.A11V	GGATGGCGTGGGC	.	26	4	31	0	.	.	T	149473162	C	T	149473162	3	4	21	1	0	0	0	0	1	0	0	0	15245	768	27	1	34	1	SSPO	7	149473162	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	6393761	149473162	9665501	37	2800											
SLC7A2	6542	hgsc.bcm.edu	37	chr8	17401015	17401015	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggccggggtttatgtcctcgCtggggaggtggccaaggcag	5	8	19	9	2	0	0	0	0	0	0	2	1	1	1	3	8	0	3	3	8	2	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SLC7A2,NS,carcinoma,0,1	SLC7A2	NM_001164771	exon2	c.C287T	p.A96V	TCCTCGCTGGGGA	.	31	2	49	0	.	0	T	17401015	C	T	17401015	3	4	21	1	0	0	0	0	1	0	0	0	14752	797	28	3	293	3	SLC7A2	8	17401015	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		17401015	128963007	38	2801											
TEX15	56154	hgsc.bcm.edu	37	chr8	30690813	30690813	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agactattttcagtgtcctgGatgaaaggattcttggtgcc	9	14	11	7	0	2	2	1	1	1	1	3	4	3	4	2	3	1	0	2	3	2	5	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_031271	exon4	c.C8359A	p.P2787T	GTCCTGGATGAAA	.	72	3	130	0	.	.	T	30690813	G	T	30690813	3	4	21	1	0	0	0	0	1	0	0	0	15838	1174	41	3	14	3	TEX15	8	30690813	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	13289798	30690813	115673209	39	2802											
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	75737614	75737614	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcactgatattgaagcagctCtgaaagcacaattagattca	15	11	7	8	0	3	4	2	3	1	1	3	4	3	4	0	0	3	3	0	0	5	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015886	exon2	c.C130A	p.L44M	GCAGCTCTGAAAG	.	31	8	38	0	.	.	A	75737614	C	A	75737614	3	1	21	1	0	0	0	0	1	0	0	0	11916	912	32	3	132	3	PI15	8	75737614	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	45046801	75737614	70626408	40	2803											
CYP11B1	1584	hgsc.bcm.edu	37	chr8	143957206	143957206	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgttcactgatgctggctGcggcggccaggctctcctgg	4	10	15	12	2	2	1	1	1	1	0	3	2	2	1	2	5	2	4	2	5	0	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP11B1,NS,carcinoma,0,1	CYP11B1	NM_000497	exon6	c.C1043A	p.A348E	CTGGCTGCGGCGG	.	33	2	53	0	.	0	T	143957206	G	T	143957206	3	4	21	1	0	0	0	0	1	0	0	0	4168	1319	46	3	484	3	CYP11B1	8	143957206	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	68219592	143957206	2406816	41	2804											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	13168539	13168539	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacgatcatccccaagccaTctttattagcactaactgtc	12	11	5	13	1	2	0	1	0	1	0	4	2	3	0	3	0	4	1	3	0	5	4	rs372981122	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_003829	exon22	c.A3080G	p.D1027G	AAGCCATCTTTAT	.	54	11	50	0	.	.	C	13168539	T	C	13168539	3	2	21	1	0	0	0	0	1	0	0	0	9771	1435	50	4	3145	4	MPDZ	9	13168539	Missense_Mutation	SNP	T	TCGA-W5-AA33-01A-11D-A417-09		13168539	128044892	42	2805											
CD72	971	broad.mit.edu;bcgsc.ca	37	chr9	35615948	35615948	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cagagcggatacctgctgagCcgcatgtgaagaagggcttc	10	7	14	10	2	0	4	0	2	0	2	1	5	0	5	2	2	4	3	2	2	3	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	CD72	NM_001782	exon5	c.G680A	p.G227D	GCTGAGCCGCATG	.	13	3	19	0	.	20	T	35615948	C	T	35615948	3	4	21	1	0	0	0	0	1	0	0	0	3056	739	26	3	415	3	CD72	9	35615948	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	22447409	35615948	105597483	43	2806											
ECM2	1842	bcgsc.ca	37	chr9	95264897	95264897	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tatgattgaaacaaatttcaGttatttcttcaatttggtta	13	19	5	4	0	3	2	2	2	1	0	3	2	3	2	0	1	1	2	0	1	6	8	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ECM2	NM_001393	exon8	c.C1502A	p.T501N	ATTTCAGTTATTT	.	33	3	39	0	.	147	T	95264897	T	T	95264897	3	4	21	1	0	0	0	0	1	0	0	0	4924	1029	36	3	609	3	ECM2	9	95264897	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	59648949	95264897	45948534	44	2807											
KIAA1958	158405	bcgsc.ca	37	chr9	115337025	115337025	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaatgcagaactgacaggagGagtagatggaccagccctgt	14	6	13	8	0	0	3	0	1	0	2	0	6	0	6	2	3	3	2	2	3	3	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	KIAA1958	NM_133465	exon2	c.G665T	p.G222V	CAGGAGGAGTAGA	.	14	3	22	0	.	52	T	115337025	T	T	115337025	3	4	21	1	0	0	0	0	1	0	0	0	8306	1174	41	3	667	3	KIAA1958	9	115337025	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	20072128	115337025	25876406	45	2808											
HPSE2	60495	hgsc.bcm.edu	37	chr10	100481428	100481428	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acctacccatctaggagggcGatgacattcttcctcggccg	8	9	10	14	3	2	1	0	1	2	0	4	3	3	2	4	3	1	0	4	3	2	4	rs142810016	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	HPSE2_ENST00000370546,NS,carcinoma,0,1	HPSE2_ENST00000370546	NM_001166246	exon5	c.C942T	p.I314I	GAGGGCGATGACA	.	57	4	78	0	.	0	A	100481428	G	A	100481428	2	1	21	1	0	0	0	0	0	0	0	1	7386	1048	37	1		1	HPSE2	10	100481428	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		100481428	35053319	46	2809											
TRUB1	142940	hgsc.bcm.edu	37	chr10	116702491	116702491	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gactctagacagcgcagcccGaggagttctgggtaagagat	11	7	14	9	2	2	2	0	0	2	2	2	6	2	3	1	2	2	3	1	2	2	3	rs143607039	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	TRUB1,bladder,carcinoma,0,3	TRUB1	NM_139169	exon2	c.G374T	p.R125L	CAGCCCGAGGAGT	.	38	2	49	0	.	0	T	116702491	G	T	116702491	3	4	21	1	0	0	0	0	1	0	0	0	16663	1058	37	2	380	2	TRUB1	10	116702491	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	16221063	116702491	18832256	47	2810											
TPP1	1200	bcgsc.ca	37	chr11	6638859	6638859	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcaatcatttcctctcaccgGatgctcagccagcaagtcag	10	9	8	14	1	4	0	4	0	1	0	6	1	5	1	3	1	3	3	3	1	2	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	TPP1	NM_000391	exon4	c.C378A	p.I126I	TCACCGGATGCTC	.	13	3	18	0	.	71	T	6638859	T	T	6638859	2	4	21	1	0	0	0	0	0	0	0	1	16472	1164	41	3		3	TPP1	11	6638859	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		6638859	128367657	48	2811											
CTR9	9646	hgsc.bcm.edu	37	chr11	10794117	10794117	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtaccatgtggcccgggcacGcaaacaagatgaagaagagc	14	4	13	10	2	0	4	0	1	0	3	0	4	0	4	2	2	3	3	2	2	5	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CTR9,NS,carcinoma,0,1	CTR9	NM_014633	exon20	c.G2495T	p.R832L	GGGCACGCAAACA	.	37	2	52	0	.	0	T	10794117	G	T	10794117	3	4	21	1	0	0	0	0	1	0	0	0	4048	1087	38	2	2573	2	CTR9	11	10794117	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	4155258	10794117	124212399	49	2812											
SOX6	55553	hgsc.bcm.edu	37	chr11	16208345	16208345	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgttcttgctgttggCgagcaaggtccatttgctgc	5	14	11	11	1	2	0	1	0	1	0	3	1	3	0	2	2	4	5	2	2	1	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SOX6_ENST00000527619,NS,malignant_melanoma,0,2	SOX6_ENST00000527619	NM_001145819	exon5	c.G731T	p.R244L	TGTTGGCGAGCAA	.	29	2	31	0	.	0	A	16208345	C	A	16208345	3	1	21	1	0	0	0	0	1	0	0	0	15009	768	27	2	1884	2	SOX6	11	16208345	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	5414228	16208345	118798171	50	2813											
NAV2	89797	ucsc.edu	37	chr11	19970265	19970265	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaccacgtttgacaccaatGtcaccacggagatgagtggc	13	7	10	11	2	1	3	1	2	0	1	1	4	1	3	3	2	1	1	3	2	2	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	NAV2	NM_001244963	exon11	c.G2353T	p.V785F	ACCAATGTCACCA	.	39	4	46	0	.	255	T	19970265	G	T	19970265	3	4	21	1	0	0	0	0	1	0	0	0	10232	1377	48	3	2401	3	NAV2	11	19970265	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	3761920	19970265	115036251	51	2814											
FAM111B	374393	hgsc.bcm.edu	37	chr11	58891964	58891964	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttaataagaacattattgttTatgaagaaaagacaatagat	20	13	6	2	0	0	5	0	1	0	4	0	5	0	5	0	0	1	1	0	0	10	7	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.,2	.	NM_198947	exon4	c.T394A	p.Y132N	ATTGTTTATGAAG	.	48	2	45	1	.	84	A	58891964	T	A	58891964	3	1	21	1	0	0	0	0	1	0	0	0	5431	1754	61	5	400	5	FAM111B	11	58891964	Missense_Mutation	SNP	T	TCGA-W5-AA33-01A-11D-A417-09	38921699	58891964	76114552	52	2815											
C11orf52	91894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	111796803	111796803	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tatgctgacattcaagtgtgCagccgtccccatgcccggga	8	9	11	13	2	1	1	1	1	0	0	2	2	2	2	4	1	4	2	4	1	2	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_080659	exon4	c.C252A	p.C84X	AGTGTGCAGCCGT	.	25	5	25	0	.	.	A	111796803	C	A	111796803	4	1	21	1	0	0	0	0	0	1	0	0	1652	718	25	3	266	3	C11orf52	11	111796803	Nonsense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	52904839	111796803	23209713	53	2816											
DSCAML1	57453	broad.mit.edu;ucsc.edu	37	chr11	117375684	117375684	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gggtggggggtagccgtccaCcgagcagttgagcacaccag	8	5	17	11	2	0	1	0	1	0	0	1	2	1	1	4	4	3	4	4	4	1	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	DSCAML1	NM_020693	exon10	c.G2317A	p.V773M	CGTCCACCGAGCA	.	22	5	15	0	.	286	T	117375684	C	T	117375684	3	4	21	1	0	0	0	0	1	0	0	0	4795	507	18	3	4120	3	DSCAML1	11	117375684	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	5578881	117375684	17630832	54	2817											
ATN1	1822	broad.mit.edu	37	chr12	7045653	7045653	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttcccaggcattgcccagctAcccccactctttccctcccc	5	10	4	22	0	1	0	0	0	1	0	4	0	4	0	7	1	3	2	7	1	1	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ATN1	NM_001007026	exon5	c.A1223C	p.Y408S	CCAGCTACCCCCA	.	38	7	45	2	.	95	C	7045653	A	C	7045653	3	2	21	1	0	0	0	0	1	0	0	0	1110	391	14	4	1237	4	ATN1	12	7045653	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09		7045653	126806242	55	2818											
MFAP5	8076	hgsc.bcm.edu	37	chr12	8814663	8814663	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtgatgatgaatgcaGcaagaaacagcagcaccttg	15	6	12	8	0	0	5	0	3	0	2	0	5	0	5	1	1	5	4	1	1	3	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	MFAP5,NS,adenoma,0,1	MFAP5	NM_003480	exon2	c.C38A	p.A13D	AATGCAGCAAGAA	.	31	2	33	0	.	0	T	8814663	G	T	8814663	3	4	21	1	0	0	0	0	1	0	0	0	9568	971	34	3	519	3	MFAP5	12	8814663	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	1769010	8814663	125037232	56	2819											
OR4M1	441670	hgsc.bcm.edu	37	chr14	20248958	20248958	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcattcattctataatacaGgtggctctcattgttcgact	9	17	6	9	1	4	0	3	0	2	0	6	1	4	0	0	2	1	2	0	2	3	8	rs373976062	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	OR4M1,NS,carcinoma,0,1	OR4M1	NM_001005500	exon1	c.G477T	p.Q159H	AATACAGGTGGCT	.	60	3	95	0	.	0	T	20248958	G	T	20248958	3	4	21	1	0	0	0	0	1	0	0	0	11123	991	35	3	479	3	OR4M1	14	20248958	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		20248958	87100582	57	2820											
CMA1	1215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24974805	24974805	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggggctttgcatccgaccGtccataggatacgatgccct	8	9	12	12	3	0	0	0	0	0	0	2	3	2	1	4	3	3	2	4	3	2	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001836	exon5	c.C661T	p.R221W	CCGACCGTCCATA	.	29	7	23	0	.	.	A	24974805	G	A	24974805	3	1	21	1	0	0	0	0	1	0	0	0	3597	1144	40	1	86	1	CMA1	14	24974805	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	4725847	24974805	82374735	58	2821											
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggtgcagcgacaaggagcTgccgccgccgccgctctcac	6	4	14	17	6	1	0	1	0	1	0	2	2	1	1	4	2	4	3	4	2	1	0	rs200797826	bycluster	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	10	0	11	2	.	202	C	53619480	T	C	53619480	3	2	21	1	0	0	0	0	1	0	0	0	4349	1580	55	4	2442	4	DDHD1	14	53619480	Missense_Mutation	SNP	T	TCGA-W5-AA33-01A-11D-A417-09	28644675	53619480	53730060	59	2822											
SLC38A6	145389	ucsc.edu;bcgsc.ca	37	chr14	61504396	61504396	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctttatgatgttctttgctCttgtggtaagtttaaaatat	9	21	7	4	0	3	1	0	1	3	0	3	1	3	1	0	1	1	4	0	1	5	9	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SLC38A6	NM_153811	exon8	c.C619A	p.L207I	TTTGCTCTTGTGG	.	34	4	53	0	.	87	A	61504396	C	A	61504396	3	1	21	1	0	0	0	0	1	0	0	0	14663	913	32	3	649	3	SLC38A6	14	61504396	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	7884916	61504396	45845144	60	2823											
CYP46A1	10858	hgsc.bcm.edu	37	chr14	100158142	100158142	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agaagtatggacctgttgtgCgggtcaacgtcttccacaaa	11	10	11	9	2	2	1	1	0	1	1	3	2	3	2	2	2	2	2	2	2	4	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP46A1,NS,carcinoma,0,1	CYP46A1	NM_006668	exon3	c.C226T	p.R76W	GTTGTGCGGGTCA	.	51	3	63	0	.	0	T	100158142	C	T	100158142	3	4	21	1	0	0	0	0	1	0	0	0	4205	759	27	1	236	1	CYP46A1	14	100158142	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	38653746	100158142	7191398	61	2824											
JMJD7	100137047	hgsc.bcm.edu	37	chr15	42129066	42129066	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggcccttcgctgcacggtgCgggccggtgagatgctctat	5	9	15	12	4	1	1	0	1	1	1	2	2	1	1	2	4	3	3	2	4	1	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	JMJD7-PLA2G4B_ENST00000542534,NS,carcinoma,0,2	JMJD7-PLA2G4B_ENST00000542534	NM_001114632	exon7	c.C790T	p.R264W	ACGGTGCGGGCCG	.	40	2	44	0	.	0	T	42129066	C	T	42129066	3	4	21	1	0	0	0	0	1	0	0	0	7998	759	27	1	816	1	JMJD7	15	42129066	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		42129066	60402326	62	2825											
PKD1L2	114780	broad.mit.edu	37	chr16	81198502	81198502	+	RNA	DEL	C	C	-																															agtgggggtgtgttttgattCccataggtggttcagcatgt																								novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	PKD1L2	.	.	.	.	TTGATTCCCATAG	.	6	2	5	0	.	361	-	81198502	C	-	81198502	6	5	21	0	1	1	0	1	0	0	0	0	12013	870	30	0		0	PKD1L2	16	81198502	RNA	DEL	C	TCGA-W5-AA33-01A-11D-A417-09		81198502	9156251	63	2826											
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	83520260	83520260	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgctgctggaccgagaGgtgagctgaaaagaatacac	12	6	13	10	2	0	4	0	2	0	2	0	6	0	5	2	2	4	3	2	2	4	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001220488	exon8	c.G1101A	p.E367E	CCGAGAGGTGAGC	.	25	7	22	0	.	.	A	83520260	G	A	83520260	2	1	21	1	0	0	0	0	0	0	0	1	3121	1014	35	3		3	CDH13	16	83520260	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	2321758	83520260	6834493	64	2827											
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1972077	1972077	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccgcctgactcaccgatgAggggcaccaccaggatgtac	9	6	11	15	2	1	2	1	2	0	0	2	4	2	3	5	3	1	2	5	3	1	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_017575	exon16	c.T3830G	p.L1277R	CCGATGAGGGGCA	.	22	6	17	0	.	.	C	1972077	A	C	1972077	3	2	21	1	0	0	0	0	1	0	0	0	14851	304	11	4	445	4	SMG6	17	1972077	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09		1972077	79223133	65	2828											
GAS7	8522	hgsc.bcm.edu	37	chr17	9862568	9862568	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcttggcgatgaggatcccAggttctggggagagaggcaa	9	8	17	7	1	1	2	0	1	1	1	2	6	2	4	1	6	1	3	1	6	1	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	GAS7,NS,carcinoma,0,1	GAS7	NM_201433	exon5	c.T476C	p.L159P	GATCCCAGGTTCT	.	35	2	41	0	.	0	G	9862568	A	G	9862568	3	3	21	1	0	0	0	0	1	0	0	0	6290	188	7	4	994	4	GAS7	17	9862568	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09	7890491	9862568	71332642	66	2829											
PIGS	94005	hgsc.bcm.edu	37	chr17	26898495	26898495	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacctaggtgtgtagccGcagccccggcggccgccatg	5	5	14	17	5	0	0	0	0	0	0	0	0	0	0	7	3	2	3	7	3	2	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_033198	exon1	c.C20T	p.A7V	GTAGCCGCAGCCC	.	89	4	73	0	.	.	A	26898495	G	A	26898495	3	1	21	1	0	0	0	0	1	0	0	0	11946	1087	38	1	1695	1	PIGS	17	26898495	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	17035927	26898495	54296715	67	2830											
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	chr17	67080420	67080420	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accacatttgctgctgccctGtggggtctatgcccgtagat	6	12	11	12	1	1	1	0	0	1	1	1	1	1	1	3	2	4	3	3	2	2	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_080284	exon34	c.C4337T	p.T1446I	TGCCCTGTGGGGT	.	26	4	34	0	.	.	A	67080420	G	A	67080420	3	1	21	1	0	0	0	0	1	0	0	0	36	1377	48	3	540	3	ABCA6	17	67080420	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	40181925	67080420	14114790	68	2831											
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	59174732	59174732	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tattgtggatggagatggtgCagatgcctttgacattagca	10	13	13	5	0	0	3	0	1	0	2	0	5	0	4	1	3	3	2	1	3	2	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_031891	exon5	c.C956A	p.A319E	ATGGTGCAGATGC	.	37	9	39	0	.	.	A	59174732	C	A	59174732	3	1	21	1	0	0	0	0	1	0	0	0	3128	710	25	3	974	3	CDH20	18	59174732	Missense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09		59174732	18902516	69	2832											
CNDP1	84735	hgsc.bcm.edu	37	chr18	72251796	72251796	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tagagatggcccagctccatTaatcacaagaaccttctagt	13	10	7	11	0	2	2	1	0	1	2	3	3	3	2	3	1	2	1	3	1	5	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CNDP1,NS,carcinoma,0,1	CNDP1	NM_032649	exon12	c.T1522A	p.X508K	CTCCATTAATCAC	.	30	2	27	0	.	0	A	72251796	T	A	72251796	3	1	21	1	0	0	0	0	1	0	0	0	3616	1767	61	5	1568	5	CNDP1	18	72251796	Missense_Mutation	SNP	T	TCGA-W5-AA33-01A-11D-A417-09	13077064	72251796	5825452	70	2833											
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	48198732	48198732	+	Splice_Site	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggaagccctccgggctgcagGtaaggggcccttagagcagg	8	5	17	11	1	0	1	0	0	0	1	1	2	1	2	3	6	3	4	3	6	3	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015711	exon10	c.3186+1G>C	.	CTGCAGGTAAGGG	.	59	22	37	0	.	.	C	48198732	G	C	48198732	5	2	21	1	0	0	0	0	0	0	1	0	6516	1275	44	5	3217	5	GLTSCR1	19	48198732	Splice_Site	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		48198732	10930251	71	2834											
ZNF415	55786	hgsc.bcm.edu	37	chr19	53612346	53612346	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tccaatatgagttttctgatGtagtgcaaggcatgaatttc	11	15	9	6	0	1	3	0	3	1	0	3	3	2	3	1	1	1	4	1	1	5	5	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	ZNF415,NS,carcinoma,0,1	ZNF415	NM_018355	exon4	c.C952A	p.H318N	TCTGATGTAGTGC	.	37	2	36	0	.	0	T	53612346	G	T	53612346	3	4	21	1	0	0	0	0	1	0	0	0	17949	1377	48	3	719	3	ZNF415	19	53612346	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	5413614	53612346	5516637	72	2835											
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57888623	57888623	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagccctgtgagacatgtagCtcacttctgaaggacattct	10	11	9	11	0	3	2	1	2	2	1	3	4	3	3	1	1	2	2	1	1	2	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_173631	exon4	c.C279T	p.S93S	ATGTAGCTCACTT	.	24	7	22	0	.	.	T	57888623	C	T	57888623	2	4	21	1	0	0	0	0	0	0	0	1	18036	796	28	3		3	ZNF547	19	57888623	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	4276277	57888623	1240360	73	2836											
SLC32A1	140679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37353459	37353459	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagcggcatgttcgccaggaTgggttttcaggcggccacgg	6	8	17	10	4	1	0	1	0	0	0	2	2	1	1	2	6	1	3	2	6	0	3	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SLC32A1,lower_third,carcinoma,0,1	SLC32A1	NM_080552	exon1	c.T92A	p.M31K	CCAGGATGGGTTT	.	29	5	29	0	.	0	A	37353459	T	A	37353459	3	1	21	1	0	0	0	0	1	0	0	0	14620	1464	51	5	94	5	SLC32A1	20	37353459	Missense_Mutation	SNP	T	TCGA-W5-AA33-01A-11D-A417-09		37353459	25672061	74	2837											
TSHZ2	128553	bcgsc.ca	37	chr20	51872335	51872335	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agaaagccgagtcctcgcaaGcacaatcttgtatgtcccca	12	8	8	13	2	1	1	0	0	1	1	4	2	3	1	4	0	2	3	4	0	4	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	TSHZ2,NS,carcinoma,-1,1	TSHZ2	NM_173485	exon2	c.G2338T	p.A780S	TCGCAAGCACAAT	.	20	3	28	0	.	209	T	51872335	T	T	51872335	3	4	21	1	0	0	0	0	1	0	0	0	16685	971	34	3	2344	3	TSHZ2	20	51872335	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	14518876	51872335	11153185	75	2838											
TTC3	7267	bcgsc.ca	37	chr21	38470262	38470262	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaatacaagagtttaaaaaGaagaaaataaaaatcaccag	26	6	5	4	0	1	3	1	0	0	3	1	3	1	3	1	0	1	1	1	0	13	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	TTC3	.	.	.	.	TAAAAAGAAGAAA	.	24	4	32	0	.	182	T	38470262	T	T	38470262	3	4	21	1	0	0	0	0	1	0	0	0	16759	957	33	3		3	TTC3	21	38470262	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		38470262	9659633	76	2839											
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	17072592	17072592	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	attcctgcagctgctagctgGcctacttgcttttctagtaa	7	15	8	11	0	1	0	0	0	1	0	2	0	2	0	2	1	6	6	2	1	4	8	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_014406	exon1	c.C849A	p.G283G	TAGCTGGCCTACT	.	30	7	42	0	.	.	T	17072592	G	T	17072592	2	4	21	1	0	0	0	0	0	0	0	1	2983	1190	42	3		3	CCT8L2	22	17072592	Silent	SNP	G	TCGA-W5-AA33-01A-11D-A417-09		17072592	34231974	77	2840											
SLC5A1	6523	broad.mit.edu	37	chr22	32500775	32500775	+	Silent	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gttctgccttctctgcagctCtaccgtctgtgttggagcct	3	15	10	13	1	4	0	0	0	4	0	5	1	4	1	3	1	5	4	3	1	1	4	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SLC5A1	NM_000343	exon14	c.C1668G	p.L556L	GCAGCTCTACCGT	.	27	5	20	0	.	80	G	32500775	C	G	32500775	2	3	21	1	0	0	0	0	0	0	0	1	14716	900	32	5		5	SLC5A1	22	32500775	Silent	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	15428183	32500775	18803791	78	2841											
NUP50	10762	hgsc.bcm.edu	37	chr22	45574136	45574136	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taggttctcttgctgcaaatGgccctaccaccttggttgat	7	14	9	11	0	1	1	0	1	1	0	2	1	1	1	3	3	3	4	3	3	3	6	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_007172	exon5	c.G358T	p.G120C	GCAAATGGCCCTA	.	72	4	110	0	.	.	T	45574136	G	T	45574136	3	4	21	1	0	0	0	0	1	0	0	0	10814	1348	47	3	372	3	NUP50	22	45574136	Missense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	13073361	45574136	5730430	79	2842											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	41043819	41043819	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcgaaggggtgcctacctcaAtgctcttaaaatagccaagc	12	9	9	11	1	2	0	1	0	1	0	3	1	2	0	3	2	5	1	3	2	7	3	rs377036436		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001039591	exon23	c.A3449G	p.N1150S	ACCTCAATGCTCT	.	34	10	28	0	.	.	G	41043819	A	G	41043819	3	3	21	1	0	0	0	0	1	0	0	0	17150	101	4	4	3535	4	USP9X	23	41043819	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09		41043819	114226741	80	2843											
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu	37	chrX	49079211	49079211	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagagaatgatgaaatagatGcacaccaacattcctgggaa	18	7	9	7	0	0	4	0	2	0	2	1	6	1	5	2	1	2	1	2	1	6	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_005183	exon16	c.C2205A	p.C735X	ATAGATGCACACC	.	9	6	7	0	.	.	T	49079211	G	T	49079211	4	4	21	1	0	0	0	0	0	1	0	0	2561	1311	46	3	3860	3	CACNA1F	23	49079211	Nonsense_Mutation	SNP	G	TCGA-W5-AA33-01A-11D-A417-09	8035392	49079211	106191349	81	2844											
MAGED1	9500	bcgsc.ca	37	chrX	51640347	51640347	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gatgcttaaggactacacaaAggtgcccatcaagcgctcag	13	7	10	11	1	2	0	2	0	0	0	2	2	2	1	1	2	4	2	1	2	4	2	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	MAGED1	NM_001005333	exon6	c.A1634G	p.K545R	ACACAAAGGTGCC	.	22	3	33	0	.	84	G	51640347	G	G	51640347	3	3	21	1	0	0	0	0	1	0	0	0	9233	72	3	4	1652	4	MAGED1	23	51640347	Missense_Mutation	SNP	A	TCGA-W5-AA33-01A-11D-A417-09	2561136	51640347	103630213	82	2845											
NONO	4841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	70516449	70516449	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtggagcccatggacCagttagatgatgaagaggga	12	8	15	6	0	0	5	0	3	0	2	0	8	0	8	2	3	1	1	2	3	2	1	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001145408	exon7	c.C685T	p.Q229X	ATGGACCAGTTAG	.	26	11	31	0	.	.	T	70516449	C	T	70516449	4	4	21	1	0	0	0	0	0	1	0	0	10581	595	21	3	699	3	NONO	23	70516449	Nonsense_Mutation	SNP	C	TCGA-W5-AA33-01A-11D-A417-09	18876102	70516449	84754111	83	2846											
PLEKHG5	57449	hgsc.bcm.edu	37	chr1	6529206	6529206	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcctcctcctgctcatc	1	15	1	24	0	2	0	1	0	1	0	13	0	12	0	10	0	1	1	10	0	0	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PLEKHG5_ENST00000377748,colon,carcinoma,0,1	PLEKHG5_ENST00000377748	NM_001265592	exon20	c.G2382A	p.E794E	CTCCTCCTCTTCC	.	12	2	18	0	.	0	T	6529206	C	T	6529206	2	4	22	1	0	0	0	0	0	0	0	1	12121	680	24	3		3	PLEKHG5	1	6529206	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		6529206	242721415	1	2847											
TTC39A	22996	bcgsc.ca	37	chr1	51777814	51777814	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cagtgaattggcccagcgtgGggcggttcaccaggctgctg	6	8	16	11	2	1	1	1	1	0	0	1	1	1	1	2	5	2	3	2	5	1	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	C1orf34,NS,carcinoma,0,1	TTC39A	NM_001144832	exon4	c.C344A	p.P115H	AGCGTGGGGCGGT	.	59	4	39	0	.	40	T	51777814	T	T	51777814	3	4	22	1	0	0	0	0	1	0	0	0	16769	1232	43	3	1461	3	TTC39A	1	51777814	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	45248608	51777814	197472807	2	2848											
PPM1J	333926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	113253388	113253388	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cagggaagcaggagagaaagGgcttgatgggcagggtggaa	13	4	20	4	0	0	2	0	1	0	1	0	6	0	5	0	6	1	3	0	6	3	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_005167	exon8	c.C1196G	p.P399R	AGAAAGGGCTTGA	.	96	7	37	0	.	.	C	113253388	G	C	113253388	3	2	22	1	0	0	0	0	1	0	0	0	12391	1232	43	5	333	5	PPM1J	1	113253388	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	61475574	113253388	135997233	3	2849											
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115218557	115218557	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgatggtggcctcaaacaCtggcatgaaaatattctcca	12	11	9	9	0	2	2	1	2	1	0	3	2	2	2	2	3	1	2	2	3	4	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000036	exon11	c.G1555A	p.V519M	CAAACACTGGCAT	.	124	39	83	0	.	.	T	115218557	C	T	115218557	3	4	22	1	0	0	0	0	1	0	0	0	581	565	20	3	811	3	AMPD1	1	115218557	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	1965169	115218557	134032064	4	2850											
BCL9	607	broad.mit.edu	37	chr1	147084715	147084715	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagcaggaggtgatggtccgTccccctacagtgatgtcccc	8	8	12	13	1	0	2	0	2	0	0	3	3	3	3	5	3	2	1	5	3	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	BCL9_ENST00000234739,right_upper_lobe,carcinoma,0,1	BCL9	NM_004326	exon5	c.T87C	p.R29R	GGTCCGTCCCCCT	.	116	5	64	0	.	150	C	147084715	T	C	147084715	2	2	22	1	0	0	0	0	0	0	0	1	1379	1654	58	4		4	BCL9	1	147084715	Silent	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	31866158	147084715	102165906	5	2851											
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	158549641	158549641	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtctggttgatcttcatcgTttgaatgtctgaaatttgaa	9	18	9	5	1	4	4	1	4	3	0	5	4	4	4	0	1	0	2	0	1	3	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001004477	exon1	c.A49T	p.T17S	TCATCGTTTGAAT	.	88	8	31	0	.	.	A	158549641	T	A	158549641	3	1	22	1	0	0	0	0	1	0	0	0	10970	1725	60	5	926	5	OR10X1	1	158549641	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	11464926	158549641	90700980	6	2852											
QPCT	25797	hgsc.bcm.edu	37	chr2	37586829	37586829	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtctttctcaaatatcatcaGcaccctcaatcccactgcta	11	12	3	15	0	5	0	4	0	2	0	7	0	6	0	2	0	2	2	2	0	4	3	rs372851223	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_012413	exon3	c.G374T	p.S125I	TCATCAGCACCCT	.	79	3	46	0	.	.	T	37586829	G	T	37586829	3	4	22	1	0	0	0	0	1	0	0	0	12926	971	34	3	384	3	QPCT	2	37586829	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		37586829	205612544	7	2853											
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74327840	74327840	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcctggtgcctgggggcacAgtggcagcagtggcagtttt	5	10	17	9	0	0	0	0	0	0	0	1	0	1	0	2	5	2	5	2	5	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144993	exon9	c.A3520T	p.S1174C	GGGCACAGTGGCA	.	33	8	24	0	.	.	T	74327840	A	T	74327840	3	4	22	1	0	0	0	0	1	0	0	0	15830	188	7	5	3554	5	TET3	2	74327840	Missense_Mutation	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	36741011	74327840	168871533	8	2854											
IWS1	55677	bcgsc.ca	37	chr2	128284021	128284021	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggcaggcatgcgagccGgcgttctacttcctagaagc	7	7	15	12	4	1	1	0	0	1	1	2	2	2	1	2	4	4	3	2	4	3	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	IWS1	.	.	.	.	CGAGCCGGCGTTC	.	24	12	23	0	.	61	A	128284021	A	A	128284021	3	1	22	1	0	0	0	0	1	0	0	0	7975	1131	39	1		1	IWS1	2	128284021	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	53956181	128284021	114915352	9	2855											
IMP4	92856	hgsc.bcm.edu	37	chr2	131103674	131103674	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcaaaccaggacgactaCatatcattccggtgggtcca	11	9	9	12	3	1	0	1	0	0	0	4	2	3	1	3	3	2	1	3	3	3	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	IMP4,colon,carcinoma,+2,2	IMP4	NM_033416	exon7	c.C678A	p.Y226X	CGACTACATATCA	.	42	2	31	0	.	+2	A	131103674	C	A	131103674	4	1	22	1	0	0	0	0	0	1	0	0	7764	489	17	3	704	3	IMP4	2	131103674	Nonsense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	2819653	131103674	112095699	10	2856											
ACVR1C	130399	hgsc.bcm.edu	37	chr2	158443750	158443750	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aaaatctgtgaagcagcattCggttttggtaacattgttgg	11	14	11	5	1	1	1	0	1	1	0	2	1	1	1	0	3	3	5	0	3	4	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145259	exon2	c.G253A	p.E85K	AGCATTCGGTTTT	.	94	4	54	0	.	.	T	158443750	C	T	158443750	3	4	22	1	0	0	0	0	1	0	0	0	221	893	31	1	1260	1	ACVR1C	2	158443750	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	27340076	158443750	84755623	11	2857											
HOXD9	3235	hgsc.bcm.edu	37	chr2	176988290	176988290	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagcagcattcgcagcCgcagcagcagcaacttgacc	12	4	12	13	2	0	2	0	1	0	1	1	3	0	2	2	1	7	7	2	1	2	2	rs200417886		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,4	.	NM_014213	exon1	c.C794A	p.P265Q	CGCAGCCGCAGCA	.	22	2	12	0	.	49	A	176988290	C	A	176988290	3	1	22	1	0	0	0	0	1	0	0	0	7367	652	23	2	796	2	HOXD9	2	176988290	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	18544540	176988290	66211083	12	2858											
TTN	7273	broad.mit.edu	37	chr2	179453444	179453444	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atcgtgttgaatgcttttccTttttctccaaaaagtatcca	10	17	5	9	1	1	1	0	1	1	0	5	1	3	1	3	0	1	3	3	0	4	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	TTN	NM_001267550	exon304	c.A63008G	p.K21003R	TTTTCCTTTTTCT	.	66	3	45	0	.	18412	C	179453444	T	C	179453444	3	2	22	1	0	0	0	0	1	0	0	0	16797	1609	56	4	45207	4	TTN	2	179453444	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	2465154	179453444	63745929	13	2859											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttgatccccataagcatgacGacctatgatgataggtttta	12	13	8	8	1	0	4	0	4	0	0	1	5	1	4	3	1	1	2	3	1	4	6	rs121913499	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	54	25	40	0	.	0	A	209113113	G	A	209113113	3	1	22	1	0	0	0	0	1	0	0	0	7538	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	29659669	209113113	34086260	14	2860											
OR6B3	150681	hgsc.bcm.edu;broad.mit.edu	37	chr2	240984497	240984497	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagtcaaatggcctcctcaGagaggctggctgtgtatttg	9	11	12	9	0	2	1	2	0	0	1	3	2	3	1	2	3	0	3	2	3	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_173351	exon1	c.C993A	p.L331L	TCCTCAGAGAGGC	.	100	4	88	0	.	.	T	240984497	G	T	240984497	2	4	22	1	0	0	0	0	0	0	0	1	11236	929	33	3		3	OR6B3	2	240984497	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	31871384	240984497	2214876	15	2861											
HYAL3	8372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50332983	50332983	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggggctggccacaaccCaggcacagggccacccccag	9	2	14	16	0	0	0	0	0	0	0	0	0	0	0	5	6	1	3	5	6	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001200030	exon2	c.G51A	p.L17L	ACAACCCAGGCAC	.	13	9	29	0	.	.	T	50332983	C	T	50332983	2	4	22	1	0	0	0	0	0	0	0	1	7509	581	21	3		3	HYAL3	3	50332983	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		50332983	147689447	16	2862											
RAD54L2	23132	hgsc.bcm.edu	37	chr3	51675865	51675865	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aaggagcacagaagtgggttCgaaacatcagctacttccgt	13	8	11	9	2	1	1	1	0	0	1	3	3	2	2	1	2	4	3	1	2	4	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	RAD54L2,NS,carcinoma,0,1	RAD54L2	NM_015106	exon14	c.C2332T	p.R778X	TGGGTTCGAAACA	.	48	2	36	0	.	0	T	51675865	C	T	51675865	4	4	22	1	0	0	0	0	0	1	0	0	13046	876	31	1	2382	1	RAD54L2	3	51675865	Nonsense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	1342882	51675865	146346565	17	2863											
SLC25A26	115286	hgsc.bcm.edu	37	chr3	66293723	66293723	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaacatatgttggctgcctCtgctggagaagtggtaagta	11	11	13	6	0	1	1	0	0	1	1	1	3	1	1	1	3	3	5	1	3	5	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	SLC25A26,bladder,carcinoma,0,1	SLC25A26	NM_173471	exon4	c.C287A	p.S96Y	CTGCCTCTGCTGG	.	27	2	19	0	.	0	A	66293723	C	A	66293723	3	1	22	1	0	0	0	0	1	0	0	0	14544	913	32	3	99	3	SLC25A26	3	66293723	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	14617858	66293723	131728707	18	2864											
MYNN	55892	hgsc.bcm.edu	37	chr3	169504301	169504301	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaactatggatgtgaaGccttctgatatgactttacc	12	13	8	8	0	2	4	1	3	1	1	2	5	2	5	2	1	3	0	2	1	5	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MYNN,upper_leg,malignant_melanoma,0,1	MYNN	NM_001185118	exon9	c.G1668T	p.K556N	TGTGAAGCCTTCT	.	52	2	35	0	.	0	T	169504301	G	T	169504301	3	4	22	1	0	0	0	0	1	0	0	0	10109	962	34	3	1694	3	MYNN	3	169504301	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	103210578	169504301	28518129	19	2865											
DNAJC19	131118	hgsc.bcm.edu	37	chr3	180702477	180702477	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctttagcttcattgattttgGctgctatataaggagatcct	9	17	8	7	0	1	2	1	1	0	1	2	3	2	2	1	2	2	3	1	2	4	9	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145261	exon6	c.C302A	p.A101D	ATTTTGGCTGCTA	.	69	4	24	0	.	.	T	180702477	G	T	180702477	3	4	22	1	0	0	0	0	1	0	0	0	4665	1203	42	3	52	3	DNAJC19	3	180702477	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	11198176	180702477	17319953	20	2866											
MUC4	4585	hgsc.bcm.edu	37	chr3	195511156	195511156	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacgttggtgacaggaagaCgggtggtgtcacctgtggaa	11	8	16	6	2	1	2	1	1	0	1	1	4	1	4	1	5	1	1	1	5	3	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MUC4_ENST00000463781,colon,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.G7295C	p.R2432P	GGAAGACGGGTGG	.	229	10	100	0	.	0	G	195511156	C	G	195511156	3	3	22	1	0	0	0	0	1	0	0	0	10026	536	19	5		5	MUC4	3	195511156	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	14808679	195511156	2511274	21	2867											
LRCH3	84859	bcgsc.ca	37	chr3	197547212	197547212	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataggatgtgagctgcaatgAaattcaaactataccttccc	14	11	7	9	0	1	2	1	2	0	0	2	3	2	3	2	1	4	2	2	1	6	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	LRCH3	NM_032773	exon4	c.A551G	p.E184G	GCAATGAAATTCA	.	156	60	74	2	.	96	G	197547212	G	G	197547212	3	3	22	1	0	0	0	0	1	0	0	0	8979	246	9	4	565	4	LRCH3	3	197547212	Missense_Mutation	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	2036056	197547212	475218	22	2868											
HTT	3064	hgsc.bcm.edu	37	chr4	3076659	3076659	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcagcagcagcagcAgcaacagccgccaccgccgc	11	0	12	18	3	0	0	0	0	0	0	0	0	0	0	4	0	9	8	4	0	1	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002111	exon1	c.A107C	p.Q36P	AGCAGCAGCAACA	.	16	4	7	0	.	.	C	3076659	A	C	3076659	3	2	22	1	0	0	0	0	1	0	0	0	7501	188	7	4	109	4	HTT	4	3076659	Missense_Mutation	SNP	A	TCGA-W5-AA34-01A-11D-A417-09		3076659	188077617	23	2869											
OTOP1	133060	hgsc.bcm.edu	37	chr4	4204211	4204211	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccagagtgatgagccGttccttgtgctcattgagtt	10	12	10	9	1	1	4	1	3	0	1	2	4	2	4	3	0	3	3	3	0	2	4	rs200612216		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OTOP1,NS,carcinoma,0,3	OTOP1	NM_177998	exon4	c.C694T	p.R232W	TGAGCCGTTCCTT	.	49	5	24	0	.	0	A	4204211	G	A	4204211	3	1	22	1	0	0	0	0	1	0	0	0	11352	1144	40	1	1156	1	OTOP1	4	4204211	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	1127552	4204211	186950065	24	2870											
LRRC66	339977	hgsc.bcm.edu	37	chr4	52860592	52860592	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atggaaggcagccttatcagGatctgagggaacttcagcag	12	8	13	8	0	3	1	2	1	1	0	3	4	3	4	1	4	3	2	1	4	3	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001024611	exon4	c.C2596A	p.P866T	TATCAGGATCTGA	.	99	4	53	0	.	.	T	52860592	G	T	52860592	3	4	22	1	0	0	0	0	1	0	0	0	9063	1174	41	3	50	3	LRRC66	4	52860592	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	48656381	52860592	138293684	25	2871											
IGJ	3512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71522073	71522073	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggatagcaggcatctggggtTaaggctgtttccaccatttt	8	13	12	8	0	1	0	0	0	1	0	2	1	2	1	2	5	1	5	2	5	2	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144646	exon4	c.A453C	p.L151F	TGGGGTTAAGGCT	.	71	18	49	0	.	.	G	71522073	T	G	71522073	3	3	22	1	0	0	0	0	1	0	0	0	7636	1751	61	4	30	4	IGJ	4	71522073	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	18661481	71522073	119632203	26	2872											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	73962894	73962894	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cacgcttaggacttgctactGttaacttcccatttggagaa	10	13	8	10	1	0	1	0	0	0	1	1	3	1	2	1	2	3	3	1	2	4	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_032217	exon27	c.C5117A	p.T1706K	GCTACTGTTAACT	.	88	4	60	0	.	.	T	73962894	G	T	73962894	3	4	22	1	0	0	0	0	1	0	0	0	642	1377	48	3	2726	3	ANKRD17	4	73962894	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2440821	73962894	117191382	27	2873											
C4orf17	84103	hgsc.bcm.edu	37	chr4	100460497	100460497	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tgcaaaatcaaaagtgctgaCcagagatacagaaggggatc	17	6	11	7	0	1	3	1	1	0	2	2	5	1	4	1	2	3	2	1	2	6	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	C4orf17,NS,carcinoma,0,1	C4orf17	NM_032149	exon7	c.C806A	p.T269N	TGCTGACCAGAGA	.	31	2	23	0	.	0	A	100460497	C	A	100460497	3	1	22	1	0	0	0	0	1	0	0	0	2267	507	18	3	828	3	C4orf17	4	100460497	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	26497603	100460497	90693779	28	2874											
INTS12	57117	hgsc.bcm.edu	37	chr4	106614585	106614585	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgggagatgactgtgtttctGgtttctccaatctaggtttc	6	17	11	7	0	3	2	0	1	3	1	5	3	3	2	1	3	0	3	1	3	2	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_020395	exon5	c.C368A	p.P123Q	GTTTCTGGTTTCT	.	100	4	61	0	.	.	T	106614585	G	T	106614585	3	4	22	1	0	0	0	0	1	0	0	0	7821	1348	47	3	1036	3	INTS12	4	106614585	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	6154088	106614585	84539691	29	2875											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123274248	123274248	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcgttcaaaatcttgggcccTttttcatttagaagaaccaa	12	14	6	9	1	3	2	2	0	1	2	4	2	3	2	2	1	1	1	2	1	6	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_015312	exon79	c.T14039C	p.L4680P	GGGCCCTTTTTCA	.	73	4	33	0	.	.	C	123274248	T	C	123274248	3	2	22	1	0	0	0	0	1	0	0	0	8250	1609	56	4	14353	4	KIAA1109	4	123274248	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	16659663	123274248	67880028	30	2876											
SMARCA5	8467	broad.mit.edu	37	chr4	144474311	144474311	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atggcgcacctgatggtcgaGgaagaaaaaagaagctgaaa	17	5	13	6	2	0	4	0	2	0	2	1	6	0	5	1	3	1	2	1	3	6	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	SMARCA5	NM_003601	exon24	c.G3133T	p.G1045X	GGTCGAGGAAGAA	.	118	4	61	0	.	73	T	144474311	G	T	144474311	4	4	22	1	0	0	0	0	0	1	0	0	14825	1001	35	3	3227	3	SMARCA5	4	144474311	Nonsense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	21200063	144474311	46679965	31	2877											
NAF1	92345	bcgsc.ca	37	chr4	164050124	164050124	+	Silent	SNP	T	G	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtggtggagggggagggggTgggggtagggagtatggtaa	8	7	26	0	0	0	0	0	0	0	0	0	3	0	3	0	10	0	3	0	10	3	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NAF1	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	52	21	36	1	.	69	G	164050124	G	G	164050124	2	3	22	1	0	0	0	0	0	0	0	1	10188	1683	59	4		4	NAF1	4	164050124	Silent	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	19575813	164050124	27104152	32	2878											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu	37	chr4	187525601	187525601	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgtcaggaggactccttgcGggttaacttcaaaagccttc	10	11	10	10	1	2	0	2	0	0	0	4	2	3	2	2	3	3	1	2	3	3	4	rs200357548	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	FAT1,bladder,carcinoma,+1,2	FAT1	NM_005245	exon18	c.C10478T	p.P3493L	CCTTGCGGGTTAA	.	92	4	59	0	.	+1	A	187525601	G	A	187525601	3	1	22	1	0	0	0	0	1	0	0	0	5722	1116	39	1	3328	1	FAT1	4	187525601	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	23475477	187525601	3628675	33	2879											
SEMA5A	9037	hgsc.bcm.edu	37	chr5	9202072	9202072	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttcaagttacatacacattGgtggtaaagatgccatagat	14	13	8	6	0	1	2	1	0	0	2	1	2	1	2	1	2	3	2	1	2	6	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_003966	exon9	c.C927A	p.T309T	CACATTGGTGGTA	.	51	4	26	0	.	.	T	9202072	G	T	9202072	2	4	22	1	0	0	0	0	0	0	0	1	14091	1335	47	3		3	SEMA5A	5	9202072	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		9202072	171713188	34	2880											
CDH6	1004	hgsc.bcm.edu	37	chr5	31317975	31317975	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcgctcatccaccccaCgggactgagcacgggggctc	7	4	15	15	3	1	1	1	1	0	0	3	3	2	3	3	5	1	3	3	5	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CDH6,NS,carcinoma,0,1	CDH6	NM_004932	exon11	c.C1826T	p.T609M	ACCCCACGGGACT	.	40	2	30	0	.	0	T	31317975	C	T	31317975	3	4	22	1	0	0	0	0	1	0	0	0	3136	536	19	1	1864	1	CDH6	5	31317975	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	22115903	31317975	149597285	35	2881											
GIN1	54826	hgsc.bcm.edu	37	chr5	102440388	102440388	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatccatttggtgaacaaatCtgtcatgattatagcatata	15	14	6	6	0	2	2	1	2	1	0	3	2	3	2	1	1	2	1	1	1	7	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	GIN1,mouth,carcinoma,0,1	GIN1	NM_017676	exon4	c.G496T	p.D166Y	ACAAATCTGTCAT	.	32	2	25	0	.	0	A	102440388	C	A	102440388	3	1	22	1	0	0	0	0	1	0	0	0	6428	913	32	3	1092	3	GIN1	5	102440388	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	71122413	102440388	78474872	36	2882											
SGCD	6444	broad.mit.edu	37	chr5	155935643	155935643	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aacctgaggatcacagaaaaAggtctaaagctagaaggaga	19	5	11	6	0	2	4	1	1	1	3	2	6	2	5	1	3	2	1	1	3	7	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	SGCD	NM_000337	exon4	c.A225G	p.K75K	AGAAAAAGGTCTA	.	150	4	83	0	.	52	G	155935643	A	G	155935643	2	3	22	1	0	0	0	0	0	0	0	1	14255	69	3	4		4	SGCD	5	155935643	Silent	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	53495255	155935643	24979617	37	2883											
NSD1	64324	hgsc.bcm.edu	37	chr5	176709524	176709524	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaagaatgcagagctcGaattcgctatgctcaagaac	15	8	10	8	2	1	5	1	1	0	4	3	6	1	5	0	0	4	4	0	0	7	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NSD1_ENST00000439151,bladder,carcinoma,0,3	NSD1_ENST00000439151	NM_022455	exon19	c.G5951T	p.R1984L	GAGCTCGAATTCG	.	49	2	35	0	.	0	T	176709524	G	T	176709524	3	4	22	1	0	0	0	0	1	0	0	0	10717	1058	37	2	6021	2	NSD1	5	176709524	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	20773881	176709524	4205736	38	2884											
CYP21A2	0	broad.mit.edu	37	chr6	31973481	31973483	+	RNA	DEL	CTG	CTG	-																															ttgccatgctgctcctgggcCtgctgctgctgctgcccctg																								rs372987663		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CYP21A2	.	.	.	.	CTGGGCCTGCTGC	.	149	8	66	0	.	42	-	31973483	CTG	-	31973481	6	5	22	0	1	1	0	1	0	0	0	0	4176	680	24	0		0	CYP21A2	6	31973481	RNA	DEL	CTG	TCGA-W5-AA34-01A-11D-A417-09		31973481	139141586	39	2885											
HLA-DOA	3111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32975954	32975954	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtccacagagaacagcTgttcctcatcaaattcatgg	12	10	8	11	0	4	1	4	0	0	1	6	2	6	1	2	2	2	2	2	2	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002119	exon2	c.A167T	p.Q56L	AACAGCTGTTCCT	.	61	21	32	0	.	.	A	32975954	T	A	32975954	3	1	22	1	0	0	0	0	1	0	0	0	7241	1580	55	5	601	5	HLA-DOA	6	32975954	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	1002473	32975954	138139113	40	2886											
EPHA7	2045	hgsc.bcm.edu	37	chr6	93953157	93953157	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	atgcatatcacacttgaatgCcagttccatgtaaatgtagc	13	12	7	9	0	1	1	1	1	0	0	2	1	2	1	2	0	3	4	2	0	5	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	EPHA7,caecum,carcinoma,0,1	EPHA7	NM_004440	exon17	c.G2984A	p.G995D	TGAATGCCAGTTC	.	50	3	42	0	.	0	T	93953157	C	T	93953157	3	4	22	1	0	0	0	0	1	0	0	0	5200	739	26	3	16	3	EPHA7	6	93953157	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	60977203	93953157	77161910	41	2887											
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	chr6	111697468	111697468	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcccaatgtattctcgttaGggtgacggtgcatatgtata	9	14	11	7	2	1	1	0	1	1	0	2	1	1	1	1	2	2	4	1	2	6	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002912	exon13	c.C2090A	p.P697H	TCGTTAGGGTGAC	.	73	4	37	0	.	.	T	111697468	G	T	111697468	3	4	22	1	0	0	0	0	1	0	0	0	13292	1000	35	3	7382	3	REV3L	6	111697468	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	17744311	111697468	59417599	42	2888											
CASD1	64921	hgsc.bcm.edu	37	chr7	94173762	94173762	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acattcgagttctggttgctGcatatttatttcagacaggg	9	15	10	7	1	2	1	1	0	1	1	3	2	2	1	0	2	2	4	0	2	2	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_022900	exon11	c.G1396T	p.A466S	GTTGCTGCATATT	.	95	4	27	0	.	.	T	94173762	G	T	94173762	3	4	22	1	0	0	0	0	1	0	0	0	2682	1319	46	3	1438	3	CASD1	7	94173762	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		94173762	64964901	43	2889											
ZKSCAN5	23660	hgsc.bcm.edu;bcgsc.ca	37	chr7	99123689	99123689	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctaagcaaagcacacatggCgagagagggcacagatgcag	15	3	13	10	1	0	2	0	0	0	2	0	4	0	2	1	2	3	4	1	2	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145102	exon6	c.C1026T	p.G342G	ACATGGCGAGAGA	.	69	5	47	0	.	.	T	99123689	C	T	99123689	2	4	22	1	0	0	0	0	0	0	0	1	17748	755	27	1		1	ZKSCAN5	7	99123689	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	4949927	99123689	60014974	44	2890											
PPP1R3A	5506	hgsc.bcm.edu	37	chr7	113518127	113518127	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatcattggccctagaGatttttccacactatactct	12	15	4	10	0	2	1	1	0	1	1	3	2	3	1	2	1	1	0	2	1	5	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002711	exon4	c.C3020A	p.S1007Y	CCTAGAGATTTTT	.	59	4	23	0	.	.	T	113518127	G	T	113518127	3	4	22	1	0	0	0	0	1	0	0	0	12420	942	33	3	352	3	PPP1R3A	7	113518127	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	14394438	113518127	45620536	45	2891											
GRM8	2918	hgsc.bcm.edu	37	chr7	126086280	126086280	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggtggcagctgtcacCacagccttgaagctcctctt	7	11	10	13	0	2	1	1	1	1	0	3	1	3	1	3	2	4	4	3	2	1	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	GRM8,right_upper_lobe,carcinoma,0,1	GRM8	NM_000845	exon9	c.G2577T	p.V859V	TGTCACCACAGCC	.	49	2	59	0	.	0	A	126086280	C	A	126086280	2	1	22	1	0	0	0	0	0	0	0	1	6844	581	21	3		3	GRM8	7	126086280	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	12568153	126086280	33052383	46	2892											
PAX4	5078	hgsc.bcm.edu	37	chr7	127253566	127253566	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tccacgggccactgaatcagGatactgcccacgctggaact	10	7	10	14	2	1	1	1	1	0	0	2	3	2	3	3	3	3	1	3	3	3	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PAX4,NS,carcinoma,0,1	PAX4	NM_006193	exon5	c.C559A	p.P187T	AATCAGGATACTG	.	46	2	29	0	.	0	T	127253566	G	T	127253566	3	4	22	1	0	0	0	0	1	0	0	0	11528	1174	41	3	492	3	PAX4	7	127253566	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	1167286	127253566	31885097	47	2893											
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150644044	150644044	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggaagtggggccaggccccGgggtggtcacagcactgtag	7	6	18	10	1	1	0	1	0	0	0	1	1	1	1	3	7	1	2	3	7	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000238	exon14	c.C3251T	p.P1084L	GGCCCCGGGGTGG	.	27	12	23	0	.	.	A	150644044	G	A	150644044	3	1	22	1	0	0	0	0	1	0	0	0	8076	1116	39	1	236	1	KCNH2	7	150644044	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	23390478	150644044	8494619	48	2894											
NCAPG2	54892	broad.mit.edu	37	chr7	158478886	158478886	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccagtattttccctgaagccTttttccaagctctgaaataa	11	14	5	11	0	1	2	0	2	1	0	3	2	3	2	4	0	2	2	4	0	5	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NCAPG2	NM_017760	exon8	c.A815G	p.K272R	GAAGCCTTTTTCC	.	345	6	114	1	.	80	C	158478886	T	C	158478886	3	2	22	1	0	0	0	0	1	0	0	0	10255	1609	56	4	2700	4	NCAPG2	7	158478886	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	7834842	158478886	659777	49	2895											
DLGAP2	9228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	1616583	1616583	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atctcggtgacggcgcagagCagcaccgaatccacccagga	11	4	12	14	4	1	2	0	1	1	1	3	4	2	3	3	3	2	3	3	3	1	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004745	exon6	c.C1659A	p.S553R	GCAGAGCAGCACC	.	103	52	70	0	.	.	A	1616583	C	A	1616583	3	1	22	1	0	0	0	0	1	0	0	0	4588	709	25	3	1677	3	DLGAP2	8	1616583	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		1616583	144747439	50	2896											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	35579781	35579781	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgggcttgggtgctgccgtcGtggccgttgcagtcctggtc	1	11	17	12	4	0	0	0	0	0	0	3	0	1	0	3	4	3	4	3	4	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_080872	exon9	c.G1171A	p.V391M	GCCGTCGTGGCCG	.	47	5	32	0	.	.	A	35579781	G	A	35579781	3	1	22	1	0	0	0	0	1	0	0	0	17055	1145	40	1	1205	1	UNC5D	8	35579781	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	33963198	35579781	110784241	51	2897											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41525850	41525850	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggccttgctgcctccGgtccctgtcggcctgggagc	1	12	13	15	2	1	0	0	0	1	0	4	1	3	1	5	4	3	1	5	4	0	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001142446	exon40	c.C5452T	p.R1818W	GCCTCCGGTCCCT	.	47	22	22	0	.	.	A	41525850	G	A	41525850	3	1	22	1	0	0	0	0	1	0	0	0	616	1115	39	1	658	1	ANK1	8	41525850	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	5946069	41525850	104838172	52	2898											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	61654449	61654449	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccagggctgttcaggtacCagaccagatacgagccccct	9	6	10	16	1	1	2	1	0	0	2	1	3	1	2	6	2	3	3	6	2	2	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_017780	exon2	c.C458A	p.P153Q	AGGTACCAGACCA	.	31	10	23	0	.	.	A	61654449	C	A	61654449	3	1	22	1	0	0	0	0	1	0	0	0	3352	594	21	3	460	3	CHD7	8	61654449	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	20128599	61654449	84709573	53	2899											
RAD54B	25788	hgsc.bcm.edu	37	chr8	95479633	95479633	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagtctttttttgccttacCtcaaataattttatatctgg	9	20	5	7	0	3	1	1	1	2	0	3	1	3	1	2	1	2	0	2	1	5	8	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001205262	exon2	c.G135A	p.E45E	CCTTACCTCAAAT	.	97	4	55	0	.	.	T	95479633	C	T	95479633	2	4	22	1	0	0	0	0	0	0	0	1	13044	695	24	3		3	RAD54B	8	95479633	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	33825184	95479633	50884389	54	2900											
IKBKAP	8518	hgsc.bcm.edu	37	chr9	111681574	111681574	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacagcaaaaaactgtccaTccccccgccaggtaacttgt	12	8	6	15	1	1	0	1	0	0	0	3	0	3	0	5	1	3	2	5	1	4	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_003640	exon7	c.A608G	p.D203G	TGTCCATCCCCCC	.	86	4	105	0	.	.	C	111681574	T	C	111681574	3	2	22	1	0	0	0	0	1	0	0	0	7654	1435	50	4	3514	4	IKBKAP	9	111681574	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09		111681574	29531857	55	2901											
CUBN	8029	hgsc.bcm.edu	37	chr10	16990489	16990489	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttcttacccgacactgatgCggtgaccgtggtgtggaaac	8	11	12	10	3	1	2	0	2	1	0	1	4	1	3	2	3	3	0	2	3	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CUBN,NS,carcinoma,0,1	CUBN	NM_001081	exon35	c.G5197A	p.A1733T	CTGATGCGGTGAC	.	64	3	56	0	.	0	T	16990489	C	T	16990489	3	4	22	1	0	0	0	0	1	0	0	0	4074	768	27	1	5806	1	CUBN	10	16990489	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		16990489	118544258	56	2902											
ANK3	288	hgsc.bcm.edu	37	chr10	61959898	61959898	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcataccttagctttagCttctacctgagctccgtctt	6	15	7	13	2	2	1	0	1	2	0	3	1	3	1	3	0	6	4	3	0	4	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ANK3,colon,carcinoma,0,1	ANK3	NM_020987	exon13	c.G1480A	p.A494T	CTTTAGCTTCTAC	.	48	2	25	0	.	0	T	61959898	C	T	61959898	3	4	22	1	0	0	0	0	1	0	0	0	618	797	28	3	12110	3	ANK3	10	61959898	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	44969409	61959898	73574849	57	2903											
HERC4	26091	broad.mit.edu	37	chr10	69750950	69750950	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaggaagaaaacgttccatcTatctcactaaaaaatttaaa	19	10	5	7	1	2	1	1	0	2	1	4	3	3	2	1	1	1	1	1	1	9	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	HERC4	NM_022079	exon12	c.A1278G	p.I426M	TCCATCTATCTCA	.	441	4	121	0	.	78	C	69750950	T	C	69750950	3	2	22	1	0	0	0	0	1	0	0	0	7101	1512	53	4	1955	4	HERC4	10	69750950	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09	7791052	69750950	65783797	58	2904											
LCOR	84458	hgsc.bcm.edu	37	chr10	98708964	98708964	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	acggctgcaactactcagaaCcctgtgctcagcaaacttct	11	9	7	14	1	3	1	2	0	1	1	3	1	3	1	1	1	7	4	1	1	4	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001170766	exon6	c.C150T	p.N50N	TCAGAACCCTGTG	.	76	4	53	0	.	.	T	98708964	C	T	98708964	2	4	22	1	0	0	0	0	0	0	0	1	8728	506	18	3		3	LCOR	10	98708964	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	28958014	98708964	36825783	59	2905											
ABCC2	1244	hgsc.bcm.edu	37	chr10	101567200	101567200	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagtacaaaacctccggaaGaaagagctcaagaacctgct	17	5	8	11	1	1	3	1	0	0	3	2	4	2	4	3	1	5	3	3	1	8	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ABCC2,NS,carcinoma,0,1	ABCC2	NM_000392	exon12	c.G1590T	p.K530N	CCGGAAGAAAGAG	.	51	3	48	0	.	0	T	101567200	G	T	101567200	3	4	22	1	0	0	0	0	1	0	0	0	53	933	33	3	1636	3	ABCC2	10	101567200	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2858236	101567200	33967547	60	2906											
GBF1	8729	hgsc.bcm.edu	37	chr10	104123466	104123466	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccctcttcttcctactcctaGctgacaaaaagtttgcccgg	8	12	6	15	1	2	1	0	1	2	0	4	1	4	1	4	1	3	2	4	1	4	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004193	exon17	c.2015-1G>T	.	CTCCTAGCTGACA	.	82	4	71	0	.	.	T	104123466	G	T	104123466	5	4	22	1	0	0	0	0	0	0	1	0	6311	985	34	3	2076	3	GBF1	10	104123466	Splice_Site	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2556266	104123466	31411281	61	2907											
PSD	5662	hgsc.bcm.edu;bcgsc.ca	37	chr10	104172214	104172214	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcttggccaggcgctgcgCagcctccaggtccgctttct	3	10	11	17	3	2	0	0	0	2	0	4	0	4	0	5	3	2	3	5	3	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001270965	exon7	c.G1672A	p.A558T	GCTGCGCAGCCTC	.	61	4	34	0	.	.	T	104172214	C	T	104172214	3	4	22	1	0	0	0	0	1	0	0	0	12695	710	25	3	1450	3	PSD	10	104172214	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	48748	104172214	31362533	62	2908											
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	123279605	123279605	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cactgtaaaccttgcagacaAactctacgtctcctccgacc	11	9	5	16	2	2	1	0	0	2	1	4	2	3	1	4	0	4	2	4	0	4	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_022970	exon7	c.T827G	p.F276C	CAGACAAACTCTA	.	44	37	46	0	.	.	C	123279605	A	C	123279605	3	2	22	1	0	0	0	0	1	0	0	0	5899	14	1	4	1942	4	FGFR2	10	123279605	Missense_Mutation	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	19107391	123279605	12255142	63	2909											
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1776236	1776236	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gccacccagcatcagctcacCcccaggctgcgcatctgggt	7	6	10	18	1	3	0	2	0	1	0	3	0	3	0	4	2	3	4	4	2	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001909	exon6	c.G727A	p.G243S	GCTCACCCCCAGG	.	66	35	38	0	.	.	T	1776236	C	T	1776236	3	4	22	1	0	0	0	0	1	0	0	0	4056	623	22	3	527	3	CTSD	11	1776236	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		1776236	133230280	64	2910											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	21135210	21135210	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caaccttcctgggttatatcGctgtgactgtgtcccaggat	7	13	10	11	1	0	1	0	1	0	0	3	2	2	2	3	2	1	2	3	2	3	3	rs368227389	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_006157	exon13	c.G1376T	p.R459L	TATATCGCTGTGA	.	81	16	78	0	.	.	T	21135210	G	T	21135210	3	4	22	1	0	0	0	0	1	0	0	0	10380	1087	38	2	1426	2	NELL1	11	21135210	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	19358974	21135210	113871306	65	2911											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	22381017	22381017	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atatgctaattccatcagcaGccagagtgcattatggatgt	12	12	9	8	0	1	1	1	0	0	1	2	2	2	2	2	1	4	3	2	1	3	4	rs201082803		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_020346	exon4	c.G517A	p.A173T	TCAGCAGCCAGAG	.	76	27	57	0	0.001	.	A	22381017	G	A	22381017	3	1	22	1	0	0	0	0	1	0	0	0	14476	971	34	3	531	3	SLC17A6	11	22381017	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	1245807	22381017	112625499	66	2912											
RAG1	5896	ucsc.edu	37	chr11	36597457	36597457	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaccaaagagactgtggatgCagtttgtgagttaattcctt	11	13	11	6	0	0	2	0	1	0	1	1	5	1	3	2	1	1	3	2	1	2	4	rs193922462		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	RAG1	NM_000448	exon2	c.C2603T	p.A868V	TGGATGCAGTTTG	.	34	4	24	0	.	151	T	36597457	C	T	36597457	3	4	22	1	0	0	0	0	1	0	0	0	13055	710	25	3	2605	3	RAG1	11	36597457	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	14216440	36597457	98409059	67	2913											
OSBP	5007	hgsc.bcm.edu	37	chr11	59376002	59376002	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctaaagagtgtggctcgttcGttgacctgtttgatcttttc	6	17	10	8	2	1	3	0	2	1	1	4	3	1	3	1	1	0	4	1	1	2	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OSBP,caecum,carcinoma,0,1	OSBP	NM_002556	exon3	c.C777A	p.N259K	TCGTTCGTTGACC	.	43	2	15	0	.	0	T	59376002	G	T	59376002	3	4	22	1	0	0	0	0	1	0	0	0	11320	1136	40	2	1694	2	OSBP	11	59376002	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	22778545	59376002	75630514	68	2914											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62289154	62289154	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atgttcatctcaggcatcttGaatttagggccctttagttt	8	17	8	8	0	3	1	2	1	2	0	4	1	3	1	1	2	0	3	1	2	3	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001620	exon5	c.C12735G	p.F4245L	CATCTTGAATTTA	.	136	56	104	0	.	.	C	62289154	G	C	62289154	3	2	22	1	0	0	0	0	1	0	0	0	411	1281	45	5	5057	5	AHNAK	11	62289154	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2913152	62289154	72717362	69	2915											
LRP5	4041	hgsc.bcm.edu	37	chr11	68115583	68115583	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcgactgggtgggcaaGaagctgtactggacggactc	8	7	16	10	2	0	1	0	0	0	1	1	4	0	3	1	4	3	3	1	4	3	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002335	exon2	c.G360T	p.K120N	GGGCAAGAAGCTG	.	55	4	44	0	.	.	T	68115583	G	T	68115583	3	4	22	1	0	0	0	0	1	0	0	0	9005	933	33	3	366	3	LRP5	11	68115583	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	5826429	68115583	66890933	70	2916											
SHANK2	22941	hgsc.bcm.edu	37	chr11	70332552	70332552	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tctcggcccaggtcggtctcGtacttgttctccgtctcctg	2	14	10	15	4	4	0	0	0	4	0	9	0	4	0	3	3	1	2	3	3	1	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_133266	exon10	c.C2082T	p.Y694Y	GGTCTCGTACTTG	.	50	3	34	0	.	.	A	70332552	G	A	70332552	2	1	22	1	0	0	0	0	0	0	0	1	14320	1140	40	1		1	SHANK2	11	70332552	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2216969	70332552	64673964	71	2917											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	88323786	88323786	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tacctgtgagatcatcagtgGgccaagaccccagttggcat	10	9	11	11	0	2	2	2	1	0	2	2	3	2	2	4	2	1	2	4	2	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000842	exon7	c.C1673G	p.P558R	TCAGTGGGCCAAG	.	63	23	48	0	.	.	C	88323786	G	C	88323786	3	2	22	1	0	0	0	0	1	0	0	0	6841	1232	43	5	1981	5	GRM5	11	88323786	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	17991234	88323786	46682730	72	2918											
MMP20	9313	hgsc.bcm.edu	37	chr11	102465448	102465448	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gctggtaatagtgctgggccGaattcctgtccgcaagtgaa	9	10	13	9	2	0	1	0	1	0	0	2	2	2	1	3	2	1	4	3	2	5	3	rs148721639		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MMP20,mouth,carcinoma,0,1	MMP20	NM_004771	exon7	c.C994T	p.R332W	TGGGCCGAATTCC	.	40	2	26	0	0.000	0	A	102465448	G	A	102465448	3	1	22	1	0	0	0	0	1	0	0	0	9707	1057	37	1	473	1	MMP20	11	102465448	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	14141662	102465448	32541068	73	2919											
NCAM1	4684	hgsc.bcm.edu	37	chr11	113105856	113105856	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagggctgggtgagatcagcGcggcctccgagttcaagacg	9	6	16	10	4	2	2	2	1	0	2	3	4	3	2	2	3	1	2	2	3	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NCAM1_ENST00000433634,colon,carcinoma,0,4	NCAM1_ENST00000433634	NM_001242607	exon16	c.G1873A	p.A625T	ATCAGCGCGGCCT	.	45	2	41	0	.	0	A	113105856	G	A	113105856	3	1	22	1	0	0	0	0	1	0	0	0	10249	1087	38	1	1850	1	NCAM1	11	113105856	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	10640408	113105856	21900660	74	2920											
ZBTB44	29068	hgsc.bcm.edu	37	chr11	130108461	130108461	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtactgctggtggaaGgagcaatgtagagttggtag	9	11	16	5	0	1	1	0	0	1	1	1	3	1	3	0	4	3	7	0	4	5	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_014155	exon4	c.C1145A	p.P382H	GTGGAAGGAGCAA	.	61	4	46	0	.	.	T	130108461	G	T	130108461	3	4	22	1	0	0	0	0	1	0	0	0	17604	1000	35	3	228	3	ZBTB44	11	130108461	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	17002605	130108461	4898055	75	2921											
WNK1	65125	hgsc.bcm.edu	37	chr12	989117	989117	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acccacagctcctacaaccaGcagttcagtccatgggaata	13	7	7	14	0	1	0	1	0	0	0	3	1	3	1	4	1	4	3	4	1	4	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	WNK1,bladder,carcinoma,0,1	WNK1	NM_018979	exon11	c.G2752A	p.A918T	CAACCAGCAGTTC	.	44	2	36	0	.	0	A	989117	G	A	989117	3	1	22	1	0	0	0	0	1	0	0	0	17437	971	34	3	4296	3	WNK1	12	989117	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		989117	132862778	76	2922											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6153555	6153555	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acactcgagcccttcagcccGcaggttgtcagcgggacaca	9	6	11	15	3	2	0	2	0	0	0	3	2	2	1	2	2	3	2	2	2	0	2	rs61748471	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000552	exon18	c.C2344T	p.R782W	CAGCCCGCAGGTT	.	93	32	46	0	0.000	.	A	6153555	G	A	6153555	3	1	22	1	0	0	0	0	1	0	0	0	17306	1086	38	1	6237	1	VWF	12	6153555	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	5164438	6153555	127698340	77	2923											
LRRK2	120892	hgsc.bcm.edu	37	chr12	40668732	40668732	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcataggaactggacatctGctggcaaaaattctggtttc	11	13	9	8	0	3	0	1	0	2	0	4	2	3	2	0	4	2	3	0	4	4	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_198578	exon16	c.G1878T	p.L626L	ACATCTGCTGGCA	.	97	4	33	0	.	.	T	40668732	G	T	40668732	2	4	22	1	0	0	0	0	0	0	0	1	9078	1306	46	3		3	LRRK2	12	40668732	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	34515177	40668732	93183163	78	2924											
KRT74	121391	hgsc.bcm.edu	37	chr12	52961454	52961454	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatactcacagatgctcacaGaggatggattctcaccagac	14	8	8	11	0	3	3	3	0	1	3	4	5	3	5	1	2	2	1	1	2	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_175053	exon8	c.C1379A	p.S460Y	CTCACAGAGGATG	.	64	4	40	0	.	.	T	52961454	G	T	52961454	3	4	22	1	0	0	0	0	1	0	0	0	8530	942	33	3	218	3	KRT74	12	52961454	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	12292722	52961454	80890441	79	2925											
R3HDM2	22864	hgsc.bcm.edu	37	chr12	57663156	57663156	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaccacgttgggggctatagGccaccgggtgagagagaggt	9	6	18	8	2	0	2	0	1	0	2	0	5	0	2	3	5	0	2	3	5	2	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_014925	exon14	c.C1622T	p.A541V	CTATAGGCCACCG	.	95	4	68	0	.	.	A	57663156	G	A	57663156	3	1	22	1	0	0	0	0	1	0	0	0	12940	1203	42	3	1344	3	R3HDM2	12	57663156	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	4701702	57663156	76188739	80	2926											
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	86373133	86373133	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tgtgttttggtgacatatatCctcatacaatgtatatcaaa	13	16	6	6	0	2	1	2	1	0	0	3	1	3	1	1	1	1	2	1	1	7	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_013244	exon7	c.G1371A	p.R457R	ATATATCCTCATA	.	96	30	39	0	.	.	T	86373133	C	T	86373133	2	4	22	1	0	0	0	0	0	0	0	1	9597	854	30	3		3	MGAT4C	12	86373133	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	28709977	86373133	47478762	81	2927											
CHFR	55743	hgsc.bcm.edu	37	chr12	133428224	133428224	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	actgctgaggggcgacacgcGggtcctgctcgcgctccgct	4	7	15	15	6	0	1	0	1	0	0	3	2	2	1	2	3	2	4	2	3	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CHFR,NS,carcinoma,+1,1	CHFR	NM_001161344	exon12	c.C1508A	p.P503Q	ACACGCGGGTCCT	.	43	2	31	0	.	+1	T	133428224	G	T	133428224	3	4	22	1	0	0	0	0	1	0	0	0	3359	1116	39	2	514	2	CHFR	12	133428224	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	47055091	133428224	423671	82	2928											
FLT3	2322	hgsc.bcm.edu	37	chr13	28631553	28631553	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaagtaggtattctcCagcttgggtttctgtcattt	11	16	8	6	0	3	0	1	0	2	0	4	0	3	0	1	2	1	4	1	2	6	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004119	exon4	c.G415T	p.G139X	ATTCTCCAGCTTG	.	59	4	45	0	.	.	A	28631553	C	A	28631553	4	1	22	1	0	0	0	0	0	1	0	0	5975	603	21	3	2650	3	FLT3	13	28631553	Nonsense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		28631553	86538325	83	2929											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr13	29599613	29599613	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agagcactccctcagagaccCaaacagtgggggcacatgta	13	5	11	12	0	1	2	1	0	0	2	2	3	2	2	2	2	2	3	2	2	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001033602	exon1	c.C808G	p.Q270E	GAGACCCAAACAG	.	15	5	15	0	.	.	G	29599613	C	G	29599613	3	3	22	1	0	0	0	0	1	0	0	0	10014	595	21	5	810	5	MTUS2	13	29599613	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	968060	29599613	85570265	84	2930											
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu	37	chr13	49688844	49688844	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtgcctcctatctatGtgcctcctggatatgcccca	5	14	8	14	0	2	0	0	0	2	0	4	1	4	1	6	1	3	1	6	1	3	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001079673	exon4	c.G229T	p.V77L	ATCTATGTGCCTC	.	54	4	45	0	.	.	T	49688844	G	T	49688844	3	4	22	1	0	0	0	0	1	0	0	0	6002	1377	48	3	250	3	FNDC3A	13	49688844	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	20089231	49688844	65481034	85	2931											
CAB39L	81617	bcgsc.ca	37	chr13	49951237	49951237	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acacagaatttctttcattgCttgcagtgatttagacactt	11	16	6	8	0	2	3	1	1	1	2	2	3	2	3	0	0	2	2	0	0	2	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CAB39L	NM_030925	exon3	c.G142A	p.A48T	TCATTGCTTGCAG	.	24	3	54	0	.	35	T	49951237	T	T	49951237	3	4	22	1	0	0	0	0	1	0	0	0	2544	797	28	3	899	3	CAB39L	13	49951237	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	262393	49951237	65218641	86	2932											
OR10G3	26533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	22038258	22038258	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaagcaactggcaaccacCaccccaatgtctacaaacgt	15	5	7	14	1	1	1	0	0	1	1	1	2	1	1	4	1	5	2	4	1	6	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OR10G3,NS,carcinoma,0,1	OR10G3	NM_001005465	exon1	c.G618T	p.V206V	AACCACCACCCCA	.	50	15	42	0	.	0	A	22038258	C	A	22038258	2	1	22	1	0	0	0	0	0	0	0	1	10948	581	21	3		3	OR10G3	14	22038258	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		22038258	85311282	87	2933											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68265039	68265039	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggctctgccttcacatggCttggcattgtataagcaagg	8	13	11	9	0	2	0	1	0	1	0	2	0	2	0	1	4	2	5	1	4	3	6	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_015346	exon11	c.G1940C	p.S647T	ACATGGCTTGGCA	.	48	6	70	0	.	.	G	68265039	C	G	68265039	3	3	22	1	0	0	0	0	1	0	0	0	17726	797	28	5	5807	5	ZFYVE26	14	68265039	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	46226781	68265039	39084501	88	2934											
NIPA1	123606	hgsc.bcm.edu	37	chr15	23049093	23049093	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgtacctgaactggacGatgatgctgcagccgagcac	10	9	12	10	2	0	3	0	3	0	0	0	6	0	4	2	1	6	4	2	1	2	2	rs143840469	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NIPA1,NS,carcinoma,0,1	NIPA1	NM_144599	exon5	c.C726A	p.I242I	CTGGACGATGATG	.	19	2	12	0	.	0	T	23049093	G	T	23049093	2	4	22	1	0	0	0	0	0	0	0	1	10469	1048	37	2		2	NIPA1	15	23049093	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		23049093	79482299	89	2935											
ANXA2	302	ucsc.edu;bcgsc.ca	37	chr15	60644601	60644601	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctttctggaggtggggcacGctccgctcggtcatgatgct	4	11	14	12	3	2	1	1	1	1	0	4	2	3	2	2	5	1	4	2	5	0	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ANXA2	NM_001002858	exon9	c.C717T	p.S239S	GGGCACGCTCCGC	.	26	4	24	0	.	28	A	60644601	G	A	60644601	2	1	22	1	0	0	0	0	0	0	0	1	712	1078	38	1		1	ANXA2	15	60644601	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	37595508	60644601	41886791	90	2936											
CELF6	60677	hgsc.bcm.edu;bcgsc.ca	37	chr15	72582500	72582500	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtcaggactccgcaggaccGtgcactcctcgatgtggcca	7	7	12	15	4	1	0	1	0	0	0	4	3	3	2	4	3	1	2	4	3	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CELF6,NS,carcinoma,0,1	CELF6	NM_001172684	exon4	c.C491T	p.T164M	AGGACCGTGCACT	.	61	4	64	0	.	0	A	72582500	G	A	72582500	3	1	22	1	0	0	0	0	1	0	0	0	3242	1145	40	1	990	1	CELF6	15	72582500	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	11937899	72582500	29948892	91	2937											
NEO1	4756	bcgsc.ca	37	chr15	73541487	73541487	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgtgggaaacaccagtgtctGgcaatggggaaattcagaat	13	8	13	7	1	2	1	1	0	1	1	2	3	2	3	1	4	1	1	1	4	4	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NEO1	NM_001172623	exon10	c.G1693T	p.G565C	GTGTCTGGCAATG	.	73	5	60	0	.	102	T	73541487	T	T	73541487	3	4	22	1	0	0	0	0	1	0	0	0	10383	1348	47	3	1731	3	NEO1	15	73541487	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	958987	73541487	28989905	92	2938											
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	49412407	49412407	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagagattcaggaaggaCgccgcctcctaccgaagcct	12	5	12	12	3	1	1	1	0	0	1	2	6	2	4	5	3	2	0	5	3	4	2	rs143423404		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144602	exon3	c.C297T	p.D99D	GAAGGACGCCGCC	.	46	7	65	0	0.000	.	T	49412407	C	T	49412407	2	4	22	1	0	0	0	0	0	0	0	1	1842	535	19	1		1	C16orf78	16	49412407	Silent	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		49412407	40942346	93	2939											
BCL6B	255877	hgsc.bcm.edu	37	chr17	6928019	6928019	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	ccccagtggagacgaggcctCcagcagcagcagcagcagca	11	2	13	15	1	0	1	0	0	0	1	1	3	1	1	4	2	6	6	4	2	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,22	.	NM_181844	exon4	c.C701G	p.S234C	AGGCCTCCAGCAG	.	64	2	34	1	.	85	G	6928019	C	G	6928019	3	3	22	1	0	0	0	0	1	0	0	0	1375	855	30	5	711	5	BCL6B	17	6928019	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		6928019	74267191	94	2940											
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	26898172	26898174	+	In_Frame_Del	DEL	GAA	GAA	-																															agcacgatggccaccgcagcGaagaagagggcggcgcgctt																								novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_033198	exon2	c.68_70del	p.23_24del	CGCAGCGAAGAAG	.	58	16	52	0	.	.	-	26898174	GAA	-	26898172	7	5	22	1	0	1	0	1	0	0	0	0	11946	1049	37	0	1642	0	PIGS	17	26898172	In_Frame_Del	DEL	GAA	TCGA-W5-AA34-01A-11D-A417-09	19970153	26898172	54297038	95	2941											
MED1	5469	bcgsc.ca	37	chr17	37565938	37565938	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtcactactggggcttccagCagcatctgcaataagatcag	11	9	10	11	0	3	1	2	0	1	1	4	1	4	1	1	2	4	4	1	2	3	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	MED1	NM_004774	exon17	c.G2536A	p.A846T	TTCCAGCAGCATC	.	46	4	36	0	.	123	T	37565938	T	T	37565938	3	4	22	1	0	0	0	0	1	0	0	0	9475	710	25	3	2213	3	MED1	17	37565938	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	10667766	37565938	43629272	96	2942											
EFTUD2	9343	hgsc.bcm.edu	37	chr17	42937901	42937901	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcaggaacacggttcacctCgatgtggtacctgaagcaat	12	8	11	10	2	1	1	1	1	0	0	2	3	1	2	2	3	4	4	2	3	4	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	EFTUD2,NS,carcinoma,0,1	EFTUD2	NM_004247	exon17	c.G1618T	p.E540X	TCACCTCGATGTG	.	63	3	23	0	.	0	A	42937901	C	A	42937901	4	1	22	1	0	0	0	0	0	1	0	0	4987	893	31	2	1348	2	EFTUD2	17	42937901	Nonsense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	5371963	42937901	38257309	97	2943											
CDC27	996	hgsc.bcm.edu	37	chr17	45234708	45234708	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gacagttgctaaagttctgtAaagatgtgaatttaaatgtt	14	15	9	3	0	1	2	0	1	1	1	1	3	1	2	0	0	1	5	0	0	7	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CDC27,NS,malignant_melanoma,0,1	CDC27	NM_001114091	exon6	c.T518C	p.L173S	TTCTGTAAAGATG	.	76	4	43	0	.	0	G	45234708	A	G	45234708	3	3	22	1	0	0	0	0	1	0	0	0	3088	372	13	4	2030	4	CDC27	17	45234708	Missense_Mutation	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	2296807	45234708	35960502	98	2944											
TTLL6	284076	hgsc.bcm.edu	37	chr17	46868791	46868791	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aacaaaatgtcaaagcccagGatctcaaagcaggcgctgtt	15	7	9	10	1	2	0	2	0	1	0	3	1	2	1	1	2	3	3	1	2	5	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	TTLL6_ENST00000393382,right_upper_lobe,carcinoma,0,2	TTLL6_ENST00000393382	NM_001130918	exon9	c.C1173A	p.I391I	GCCCAGGATCTCA	.	39	3	27	1	.	0	T	46868791	G	T	46868791	2	4	22	1	0	0	0	0	0	0	0	1	16793	1164	41	3		3	TTLL6	17	46868791	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	1634083	46868791	34326419	99	2945											
OR4D2	124538	hgsc.bcm.edu	37	chr17	56247705	56247705	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gatgctgaggtcacatccagGggaggcaagaaggaaggcag	13	4	17	7	0	1	2	1	1	0	1	2	5	2	4	1	6	1	3	1	6	3	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OR4D2,colon,carcinoma,0,1	OR4D2	NM_001004707	exon1	c.G689T	p.G230V	ATCCAGGGGAGGC	.	44	2	31	0	.	0	T	56247705	G	T	56247705	3	4	22	1	0	0	0	0	1	0	0	0	11104	1232	43	3	691	3	OR4D2	17	56247705	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	9378914	56247705	24947505	100	2946											
DCXR	51181	hgsc.bcm.edu	37	chr17	79994159	79994159	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatggacgtcatcaccactGtggggtttactgcattcact	8	12	9	12	1	3	0	3	0	0	0	3	1	3	1	2	3	2	2	2	3	1	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	DCXR,NS,carcinoma,0,1	DCXR	NM_016286	exon7	c.C539A	p.T180K	ACCACTGTGGGGT	.	27	2	11	0	.	0	T	79994159	G	T	79994159	3	4	22	1	0	0	0	0	1	0	0	0	4342	1377	48	3	203	3	DCXR	17	79994159	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	23746454	79994159	1201051	101	2947											
ZNF521	25925	broad.mit.edu	37	chr18	22805339	22805339	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	cctctttctgcacttgctcgGaagctccatttgttccacag	6	14	7	14	1	2	0	0	0	2	0	5	1	4	1	3	1	3	4	3	1	1	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ZNF521	NM_015461	exon4	c.C2543T	p.S848F	TGCTCGGAAGCTC	.	51	4	19	0	.	269	A	22805339	G	A	22805339	3	1	22	1	0	0	0	0	1	0	0	0	18022	1174	41	3	1412	3	ZNF521	18	22805339	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		22805339	55271909	102	2948											
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	31803205	31803205	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaactggcggtacatgtcgcGctcgctctccatgttccccg	5	10	11	15	5	1	0	0	0	1	0	5	1	2	0	3	2	2	4	3	2	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NOL4,NS,carcinoma,0,1	NOL4	NM_003787	exon1	c.C13G	p.R5G	TGTCGCGCTCGCT	.	24	7	20	0	.	0	C	31803205	G	C	31803205	3	2	22	1	0	0	0	0	1	0	0	0	10571	1087	38	5	1947	5	NOL4	18	31803205	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	8997866	31803205	46274043	103	2949											
THEG	51298	hgsc.bcm.edu	37	chr19	367205	367205	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggggactgccatttgggctGccctggatacctgggacacc	6	9	14	12	0	0	0	0	0	0	0	0	3	0	3	4	5	3	1	4	5	1	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	THEG,NS,carcinoma,0,1	THEG	NM_016585	exon7	c.C773A	p.A258E	TGGGCTGCCCTGG	.	40	2	31	0	.	0	T	367205	G	T	367205	3	4	22	1	0	0	0	0	1	0	0	0	15917	1319	46	3	374	3	THEG	19	367205	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		367205	58761778	104	2950											
ATCAY	85300	hgsc.bcm.edu	37	chr19	3910859	3910859	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtggttcattcggactGtgctggccatctctcgccct	3	13	10	15	3	2	0	1	0	1	0	6	1	2	1	3	3	1	2	3	3	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_033064	exon8	c.G838T	p.V280L	CGGACTGTGCTGG	.	43	4	13	0	.	.	T	3910859	G	T	3910859	3	4	22	1	0	0	0	0	1	0	0	0	1076	1377	48	3	864	3	ATCAY	19	3910859	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	3543654	3910859	55218124	105	2951											
PPAN-P2RY11	692312	hgsc.bcm.edu;bcgsc.ca	37	chr19	10224342	10224342	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccaacttcttggcagCtgccgacgacaaactcagtg	9	8	9	15	2	2	0	1	0	1	0	2	2	2	0	3	1	5	2	3	1	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001040664	exon13	c.C1313T	p.A438V	TGGCAGCTGCCGA	.	72	4	48	0	.	.	T	10224342	C	T	10224342	3	4	22	1	0	0	0	0	1	0	0	0	12334	797	28	3		3	PPAN-P2RY11	19	10224342	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	6313483	10224342	48904641	106	2952											
SMARCA4	6597	hgsc.bcm.edu	37	chr19	11097625	11097625	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccccaggaccctcgggcgtgCcccccgggatgccaggccag	5	3	14	19	3	0	0	0	0	0	0	1	2	0	2	8	4	2	0	8	4	0	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,1	.	NM_003072	exon5	c.C805T	p.P269S	GGCGTGCCCCCCG	.	33	3	14	0	.	502	T	11097625	C	T	11097625	3	4	22	1	0	0	0	0	1	0	0	0	14824	739	26	3	819	3	SMARCA4	19	11097625	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	873283	11097625	48031358	107	2953											
UNC13A	23025	hgsc.bcm.edu	37	chr19	17756910	17756910	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tcctttgcctgcaagccctgGgcgcagaccactggaagaca	9	7	11	14	1	0	2	0	0	0	2	1	3	1	3	4	2	3	2	4	2	2	1	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001080421	exon17	c.C2055A	p.A685A	GCCCTGGGCGCAG	.	40	4	40	0	.	.	T	17756910	G	T	17756910	2	4	22	1	0	0	0	0	0	0	0	1	17044	1219	43	3		3	UNC13A	19	17756910	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	6659285	17756910	41372073	108	2954											
ZNF14	7561	hgsc.bcm.edu;bcgsc.ca	37	chr19	19824917	19824917	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	caccttcgatttttcccctgGtttctgtggtcatcttcaat	5	18	6	12	1	4	0	2	0	2	0	6	1	5	0	3	2	0	1	3	2	1	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_021030	exon3	c.C174A	p.N58K	CCCCTGGTTTCTG	.	80	4	51	0	.	.	T	19824917	G	T	19824917	3	4	22	1	0	0	0	0	1	0	0	0	17786	1252	44	3	1762	3	ZNF14	19	19824917	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2068007	19824917	39304066	109	2955											
ZNF676	163223	bcgsc.ca	37	chr19	22363736	22363737	+	Missense_Mutation	DNP	TC	TC	AG																															agggttgagacgctactaaaTcctttgccacattcttcaca																								novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ZNF676	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	76	5	60	2	.	146	AG	22363737	TC	AG	22363736	3	1	22	1	0	0	0	0	1	0	0	0	18140	1422	50	5	987	5	ZNF676	19	22363736	Missense_Mutation	DNP	TC	TCGA-W5-AA34-01A-11D-A417-09	2538819	22363736	36765247	110	2956											
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	37367799	37367799	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgattgggaatgtaaaaacCagtttgagagaaaacaggga	17	8	13	3	0	0	3	0	2	0	1	0	6	0	5	1	2	2	2	1	2	6	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001242476	exon4	c.C67G	p.Q23E	AAAAACCAGTTTG	.	93	5	44	0	.	.	G	37367799	C	G	37367799	3	3	22	1	0	0	0	0	1	0	0	0	17916	595	21	5	69	5	ZNF345	19	37367799	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	15004063	37367799	21761184	111	2957											
CEACAM20	125931	broad.mit.edu	37	chr19	45017504	45017504	+	RNA	DEL	T	T	-																															attgtggtttttggttttgcTttttttttttttttttttca																								rs10669399	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CEACAM20	.	.	.	.	TTTTGCTTTTTTT	.	7	2	5	0	.	31	-	45017504	T	-	45017504	6	5	22	0	1	1	0	1	0	0	0	0	3213	1624	56	0		0	CEACAM20	19	45017504	RNA	DEL	T	TCGA-W5-AA34-01A-11D-A417-09	7649705	45017504	14111479	112	2958											
ALDH16A1	126133	broad.mit.edu	37	chr19	49973687	49973687	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagctggggctgcgagtggCgcggaccaaggccctgtggc	6	5	19	11	3	0	1	0	0	0	1	0	3	0	2	2	6	2	2	2	6	1	0	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ALDH16A1	NM_153329	exon17	c.C2372T	p.A791V	GAGTGGCGCGGAC	.	36	3	33	0	.	54	T	49973687	C	T	49973687	3	4	22	1	0	0	0	0	1	0	0	0	485	768	27	1	2438	1	ALDH16A1	19	49973687	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	4956183	49973687	9155296	113	2959											
LILRB4	11006	hgsc.bcm.edu	37	chr19	55179365	55179365	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caggatgtgacctacgcccaGctgcacagctttaccctcag	9	8	9	15	1	1	1	1	1	0	0	1	2	1	2	3	1	5	3	3	1	2	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	LILRB4,NS,carcinoma,0,1	LILRB4	NM_006847	exon12	c.G1242A	p.Q414Q	CGCCCAGCTGCAC	.	93	3	61	0	.	0	A	55179365	G	A	55179365	2	1	22	1	0	0	0	0	0	0	0	1	8833	962	34	3		3	LILRB4	19	55179365	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	5205678	55179365	3949618	114	2960											
PREX1	57580	hgsc.bcm.edu	37	chr20	47258999	47258999	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttgtcctgcttgtcagatggGatccgcatgtcacagggcag	7	11	13	10	1	2	1	2	0	0	1	4	2	4	2	2	2	1	3	2	2	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PREX1_ENST00000396220,NS,carcinoma,0,2	PREX1_ENST00000396220	NM_020820	exon28	c.C3630A	p.I1210I	AGATGGGATCCGC	.	49	2	16	0	.	0	T	47258999	G	T	47258999	2	4	22	1	0	0	0	0	0	0	0	1	12528	1164	41	3		3	PREX1	20	47258999	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		47258999	15766521	115	2961											
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43959624	43959624	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tccttctctccacctcagtgGcatcattggggagcgcctgc	5	11	10	15	1	3	0	2	0	1	0	6	1	5	1	4	3	2	1	4	3	0	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_018964	exon7	c.G353T	p.G118V	TCAGTGGCATCAT	.	38	4	48	0	.	.	T	43959624	G	T	43959624	3	4	22	1	0	0	0	0	1	0	0	0	14652	1203	42	3	371	3	SLC37A1	21	43959624	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09		43959624	4170271	116	2962											
PTTG1IP	754	hgsc.bcm.edu	37	chr21	46271541	46271541	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gggttttcttctttaaacagGcctgaaacaaaataaacttg	14	13	7	7	0	2	1	0	1	2	0	2	1	2	1	1	2	3	1	1	2	7	7	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PTTG1IP_ENST00000445724,NS,carcinoma,0,2	PTTG1IP_ENST00000445724	NM_004339	exon6	c.C498A	p.G166G	AAACAGGCCTGAA	.	31	2	59	0	.	0	T	46271541	G	T	46271541	2	4	22	1	0	0	0	0	0	0	0	1	12872	1217	42	3		3	PTTG1IP	21	46271541	Silent	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	2311917	46271541	1858354	117	2963											
SLC5A1	6523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	32482270	32482270	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cggtaccaaggttggctgtaCcaacatcgcctatccaacct	10	9	8	14	2	0	0	0	0	0	0	2	0	1	0	5	3	4	4	5	3	6	4	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000343	exon10	c.C1085G	p.T362S	GCTGTACCAACAT	.	98	34	67	0	.	.	G	32482270	C	G	32482270	3	3	22	1	0	0	0	0	1	0	0	0	14716	507	18	5	1123	5	SLC5A1	22	32482270	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09		32482270	18822296	118	2964											
TIMP3	7078	hgsc.bcm.edu;bcgsc.ca	37	chr22	33254019	33254019	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgtaggtcgcgtctatgatgGcaagatgtacacggggctgt	8	11	15	7	3	1	2	0	1	1	1	2	2	1	2	0	4	1	4	0	4	4	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000362	exon4	c.G332T	p.G111V	ATGATGGCAAGAT	.	88	4	63	0	.	.	T	33254019	G	T	33254019	3	4	22	1	0	0	0	0	1	0	0	0	15979	1203	42	3	346	3	TIMP3	22	33254019	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	771749	33254019	18050547	119	2965											
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	19021009	19021009	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gatgtattttcggatgtaagTattaaatactttgacaaggg	13	15	10	3	1	0	1	0	1	0	0	1	3	0	2	0	2	1	3	0	2	7	8	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001184834	exon24	c.A2185G	p.T729A	TGTAAGTATTAAA	.	122	37	78	0	.	.	C	19021009	T	C	19021009	3	2	22	1	0	0	0	0	1	0	0	0	6745	1638	57	4	892	4	GPR64	23	19021009	Missense_Mutation	SNP	T	TCGA-W5-AA34-01A-11D-A417-09		19021009	136249551	120	2966											
WDR13	64743	broad.mit.edu	37	chrX	48457849	48457849	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accgtgccgtctatgaggacAggtatgcaccagaggcagcc	10	6	13	12	2	1	2	0	1	1	1	1	3	1	3	4	3	3	3	4	3	2	2	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	WDR13	NM_017883	exon3	c.A391G	p.R131G	GAGGACAGGTATG	.	114	3	60	0	.	96	G	48457849	A	G	48457849	5	3	22	1	0	0	0	0	0	0	1	0	17335	202	7	4	401	4	WDR13	23	48457849	Splice_Site	SNP	A	TCGA-W5-AA34-01A-11D-A417-09	29436840	48457849	106812711	121	2967											
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	111155791	111155791	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcctcacttgataaggCaatgagtgaggggcttgcca	9	9	15	8	0	1	3	1	3	0	0	2	3	2	3	2	5	1	2	2	5	2	3	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_012471	exon3	c.G628T	p.A210S	ATAAGGCAATGAG	.	30	18	12	0	.	.	A	111155791	C	A	111155791	3	1	22	1	0	0	0	0	1	0	0	0	16643	710	25	3	2329	3	TRPC5	23	111155791	Missense_Mutation	SNP	C	TCGA-W5-AA34-01A-11D-A417-09	62697942	111155791	44114769	122	2968											
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	149818340	149818340	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agaatctcattggttgtccaGtttggagtctactcattggt	8	16	10	7	0	3	1	2	0	2	1	5	2	4	2	1	3	1	2	1	3	2	5	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000252	exon10	c.G1019T	p.S340I	TGTCCAGTTTGGA	.	190	17	71	0	.	.	T	149818340	G	T	149818340	3	4	22	1	0	0	0	0	1	0	0	0	9985	1029	36	3	1053	3	MTM1	23	149818340	Missense_Mutation	SNP	G	TCGA-W5-AA34-01A-11D-A417-09	38662549	149818340	5452220	123	2969											
NOL9	79707	hgsc.bcm.edu	37	chr1	6609749	6609749	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaaaattctgcatcgaccaaCgcctgtcatctgtaaagaga	15	9	7	10	2	3	1	1	0	2	1	4	3	3	1	2	0	2	2	2	0	5	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	NOL9,NS,carcinoma,0,2	NOL9	NM_024654	exon3	c.G626A	p.R209H	GACCAACGCCTGT	.	30	2	38	0	.	0	T	6609749	C	T	6609749	3	4	23	1	0	0	0	0	1	0	0	0	10575	536	19	1	1522	1	NOL9	1	6609749	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		6609749	242640872	1	2970											
COL8A2	1296	hgsc.bcm.edu;bcgsc.ca	37	chr1	36565684	36565684	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tttgccctcacggaagggcgGtcccacaggtcctttctgca	6	10	11	14	2	2	0	1	0	1	0	4	1	4	1	3	4	2	1	3	4	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_005202	exon1	c.C160A	p.P54T	AGGGCGGTCCCAC	.	49	4	54	0	.	.	T	36565684	G	T	36565684	3	4	23	1	0	0	0	0	1	0	0	0	3729	1261	44	3	1959	3	COL8A2	1	36565684	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	29955935	36565684	212684937	2	2971											
PPCS	79717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	42925444	42925444	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggctaatatccttgaGtcacgacagtcctttgtgtt	7	15	11	8	1	1	1	1	1	0	0	3	2	3	1	2	2	0	2	2	2	2	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_024664	exon3	c.G783C	p.E261D	CCTTGAGTCACGA	.	92	16	90	0	.	.	C	42925444	G	C	42925444	3	2	23	1	0	0	0	0	1	0	0	0	12350	1020	36	5	793	5	PPCS	1	42925444	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	6359760	42925444	206325177	3	2972											
POMGNT1	55624	hgsc.bcm.edu	37	chr1	46662489	46662489	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccggggaccactgcctctgcGccgtgggggctccaggcggc	3	5	17	16	4	1	0	0	0	1	0	2	1	2	1	5	6	2	1	5	6	0	0	rs144959783	alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	POMGNT1_ENST00000371992,caecum,carcinoma,0,2	POMGNT1_ENST00000371992	NM_017739	exon4	c.C268A	p.R90S	CTCTGCGCCGTGG	.	19	3	20	0	.	0	T	46662489	G	T	46662489	3	4	23	1	0	0	0	0	1	0	0	0	12291	1087	38	2	1790	2	POMGNT1	1	46662489	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	3737045	46662489	202588132	4	2973											
AGL	178	bcgsc.ca	37	chr1	100366398	100366398	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctacagatgattctgctcCtttgcctgctggcacactgg	6	13	9	13	0	1	2	0	1	1	1	3	2	3	2	3	2	4	3	3	2	1	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AGL	NM_000644	exon26	c.C3569T	p.P1190L	CTGCTCCTTTGCC	.	63	4	43	0	.	137	T	100366398	T	T	100366398	3	4	23	1	0	0	0	0	1	0	0	0	381	681	24	3	3736	3	AGL	1	100366398	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	53703909	100366398	148884223	5	2974											
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	114952824	114952824	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acctgatgatcccggagaaaGggcagagggacctggagaag	13	4	16	8	1	0	5	0	2	0	3	1	8	1	6	3	4	0	1	3	4	2	0	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_033020	exon12	c.C2176A	p.L726I	GAGAAAGGGCAGA	.	49	4	66	0	.	.	T	114952824	G	T	114952824	3	4	23	1	0	0	0	0	1	0	0	0	16568	1000	35	3	1243	3	TRIM33	1	114952824	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	14586426	114952824	134297797	6	2975											
VANGL1	81839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	116206776	116206776	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtggatgccctcctcttcatCcattacctggccatcgtcct	5	13	7	16	1	2	0	1	0	1	0	6	1	5	1	6	2	2	0	6	2	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_138959	exon4	c.C699A	p.I233I	CTTCATCCATTAC	.	31	9	29	0	.	.	A	116206776	C	A	116206776	2	1	23	1	0	0	0	0	0	0	0	1	17179	845	30	3		3	VANGL1	1	116206776	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	1253952	116206776	133043845	7	2976											
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu	37	chr1	120438863	120438863	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaactccccttcagggtGaaaaattacatcttcgccaa	13	10	6	12	1	3	1	2	1	1	0	5	1	4	1	3	1	2	0	3	1	5	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ADAM30,NS,carcinoma,0,1	ADAM30	NM_021794	exon1	c.C97A	p.H33N	CAGGGTGAAAAAT	.	21	4	35	0	.	0	T	120438863	G	T	120438863	3	4	23	1	0	0	0	0	1	0	0	0	247	1290	45	3	2279	3	ADAM30	1	120438863	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	4232087	120438863	128811758	8	2977											
FLG2	388698	hgsc.bcm.edu	37	chr1	152323970	152323970	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccagatccccttcttccagCtgtccttgaccctctctgtg	4	13	7	17	0	2	2	0	1	2	1	6	2	5	2	6	0	1	1	6	0	0	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FLG2,NS,carcinoma,0,1	FLG2	NM_001014342	exon3	c.G6292A	p.A2098T	TTCCAGCTGTCCT	.	57	3	68	0	.	0	T	152323970	C	T	152323970	3	4	23	1	0	0	0	0	1	0	0	0	5956	797	28	3	887	3	FLG2	1	152323970	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	31885107	152323970	96926651	9	2978											
NUP210L	91181	hgsc.bcm.edu	37	chr1	153965494	153965494	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gacagaggcttttttacctgGctgtggtgttcctagagttg	6	15	13	7	0	0	2	0	0	0	2	1	3	1	2	2	3	1	4	2	3	2	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_207308	exon39	c.C5563A	p.P1855T	TACCTGGCTGTGG	.	59	4	84	0	.	.	T	153965494	G	T	153965494	3	4	23	1	0	0	0	0	1	0	0	0	10809	1203	42	3	111	3	NUP210L	1	153965494	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	1641524	153965494	95285127	10	2979											
PKLR	5313	ucsc.edu	37	chr1	155261558	155261558	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtagctcaccactttcaatgCcaaattgcacccggcgatct	10	10	7	14	2	3	0	2	0	1	0	3	1	3	0	3	1	3	3	3	1	3	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PKLR	NM_000298	exon10	c.G1607A	p.G536D	TCAATGCCAAATT	.	31	4	16	0	.	70	T	155261558	C	T	155261558	3	4	23	1	0	0	0	0	1	0	0	0	12024	739	26	3	125	3	PKLR	1	155261558	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	1296064	155261558	93989063	11	2980											
FAM20B	9917	bcgsc.ca	37	chr1	179041172	179041172	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcctcatctggacgccGtggaccagcggctcctgagt	6	9	12	14	3	2	2	1	2	1	0	4	4	4	4	4	3	1	1	4	3	0	0	rs200757870		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	FAM20B	NM_014864	exon8	c.G1123A	p.V375M	GACGCCGTGGACC	.	24	3	34	0	G|0.999;A|0.001	38	A	179041172	A	A	179041172	3	1	23	1	0	0	0	0	1	0	0	0	5570	1145	40	1	1149	1	FAM20B	1	179041172	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	23779614	179041172	70209449	12	2981											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	186312595	186312595	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaatttctttttctcGtcgtataaatctacaaaaat	13	17	3	8	2	4	0	1	0	3	0	6	0	4	0	0	0	2	2	0	0	7	7	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003292	exon27	c.C3613T	p.R1205X	TTTCTCGTCGTAT	.	81	35	105	0	.	.	A	186312595	G	A	186312595	4	1	23	1	0	0	0	0	0	1	0	0	16477	1153	40	1	3578	1	TPR	1	186312595	Nonsense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7271423	186312595	62938026	13	2982											
ASPM	259266	bcgsc.ca	37	chr1	197094085	197094085	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ccttagatagaattgtatttCctataaaagaaaaggttgtc	15	14	7	5	0	0	3	0	0	0	3	2	3	1	3	2	1	0	2	2	1	9	8	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ASPM	NM_001206846	exon12	c.G3083T	p.G1028V	GTATTTCCTATAA	.	63	4	59	0	.	444	A	197094085	A	A	197094085	3	1	23	1	0	0	0	0	1	0	0	0	1055	869	30	3	7418	3	ASPM	1	197094085	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	10781490	197094085	52156536	14	2983											
YOD1	55432	hgsc.bcm.edu;bcgsc.ca	37	chr1	207223000	207223000	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgacgtaactagaagCaccacgtttagtaaatgcag	13	10	8	10	2	0	2	0	1	0	1	1	2	1	2	2	0	3	5	2	0	6	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_018566	exon2	c.G412T	p.A138S	TAGAAGCACCACG	.	94	5	81	0	.	.	A	207223000	C	A	207223000	3	1	23	1	0	0	0	0	1	0	0	0	17548	710	25	3	638	3	YOD1	1	207223000	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	10128915	207223000	42027621	15	2984											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220379290	220379290	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagcacgaagagattgaaaaAggctaaatccatcaatagtc	19	7	8	7	1	1	2	1	1	0	1	3	4	2	2	1	1	1	2	1	1	8	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	RAB3GAP2	NM_012414	exon8	c.T671C	p.L224P	TGAAAAAGGCTAA	.	93	4	77	0	.	120	G	220379290	A	G	220379290	3	3	23	1	0	0	0	0	1	0	0	0	12988	72	3	4	3622	4	RAB3GAP2	1	220379290	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	13156290	220379290	28871331	16	2985											
OBSCN	84033	broad.mit.edu	37	chr1	228433225	228433225	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagccccagacagaggtgaCgtggtacaaggacgggaaga	13	3	15	10	2	0	4	0	1	0	3	0	6	0	6	3	4	2	1	3	4	3	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	OBSCN	NM_001271223	exon13	c.C3869T	p.T1290M	AGGTGACGTGGTA	.	47	3	75	0	.	2142	T	228433225	C	T	228433225	3	4	23	1	0	0	0	0	1	0	0	0	10860	536	19	1	3635	1	OBSCN	1	228433225	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	8053935	228433225	20817396	17	2986											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228480450	228480450	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtactcgtgcgtgtgCgggcaggagaggacctcggc	6	6	20	9	4	0	1	0	0	0	1	2	4	0	3	1	6	3	2	1	6	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OBSCN_ENST00000570156,colon,carcinoma,0,4	OBSCN_ENST00000570156	NM_001271223	exon45	c.C12117T	p.C4039C	CGTGTGCGGGCAG	.	43	2	36	0	.	0	T	228480450	C	T	228480450	2	4	23	1	0	0	0	0	0	0	0	1	10860	776	27	1		1	OBSCN	1	228480450	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	47225	228480450	20770171	18	2987											
NLRP3	114548	hgsc.bcm.edu	37	chr1	247588563	247588563	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atctctcagcaaatcaggctGgagctgctgaaatggattga	12	10	11	8	0	3	2	2	2	1	0	4	4	3	4	0	3	3	4	0	3	2	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	NLRP3,NS,carcinoma,0,1	NLRP3	NM_183395	exon3	c.G1818T	p.L606L	CAGGCTGGAGCTG	.	27	2	35	0	.	0	T	247588563	G	T	247588563	2	4	23	1	0	0	0	0	0	0	0	1	10525	1335	47	3		3	NLRP3	1	247588563	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	19108113	247588563	1662058	19	2988											
OR2T33	391195	hgsc.bcm.edu	37	chr1	248436878	248436878	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccggtcaagtagtcagccGccattttgggcacagtggtg	7	11	13	10	2	2	0	2	0	0	0	3	0	3	0	3	3	1	2	3	3	2	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR2T33,bladder,carcinoma,0,1	OR2T33	NM_001004695	exon1	c.C239T	p.A80V	TCAGCCGCCATTT	.	90	4	86	0	.	0	A	248436878	G	A	248436878	3	1	23	1	0	0	0	0	1	0	0	0	11072	1087	38	1	726	1	OR2T33	1	248436878	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	848315	248436878	813743	20	2989											
EHD3	30845	hgsc.bcm.edu	37	chr2	31457587	31457587	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aactctacaagagcaagctgCtgcccttggaagagcattac	13	8	9	11	0	1	2	0	0	1	2	1	3	1	3	1	1	8	4	1	1	6	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	EHD3,NS,carcinoma,0,1	EHD3	NM_014600	exon1	c.C100T	p.L34L	AAGCTGCTGCCCT	.	75	3	76	0	.	0	T	31457587	C	T	31457587	2	4	23	1	0	0	0	0	0	0	0	1	5005	796	28	3		3	EHD3	2	31457587	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		31457587	211741786	21	2990											
ARHGAP25	9938	ucsc.edu;bcgsc.ca	37	chr2	69046554	69046554	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caatttggggagttttaggtGatgcagtggcagtgggcgct	7	12	17	5	1	0	1	0	1	0	0	0	2	0	2	0	5	1	4	0	5	2	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ARHGAP25	.	.	.	.	TTAGGTGATGCAG	.	43	4	37	0	.	175	T	69046554	G	T	69046554	3	4	23	1	0	0	0	0	1	0	0	0	871	1305	45	3		3	ARHGAP25	2	69046554	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	37588967	69046554	174152819	22	2991											
TMEM150A	129303	hgsc.bcm.edu	37	chr2	85826690	85826690	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgacagccagcacacttcGcagataggccacagccaggt	12	5	11	13	1	0	2	0	1	0	1	1	3	0	2	3	2	3	2	3	2	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TMEM150A,NS,carcinoma,0,1	TMEM150A	NM_001031738	exon7	c.C532A	p.R178R	CACTTCGCAGATA	.	35	2	30	0	.	0	T	85826690	G	T	85826690	2	4	23	1	0	0	0	0	0	0	0	1	16127	1095	38	2		2	TMEM150A	2	85826690	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	16780136	85826690	157372683	23	2992											
CCDC138	165055	hgsc.bcm.edu	37	chr2	109405307	109405307	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggtttctttgtcgttgacaGgtgatttggatatctactct	6	19	10	6	1	3	2	0	2	3	0	4	3	3	3	0	3	1	2	0	3	2	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CCDC138,NS,carcinoma,0,1	CCDC138	NM_144978	exon3	c.152-1G>T	.	TTGACAGGTGATT	.	27	2	50	0	.	0	T	109405307	G	T	109405307	5	4	23	1	0	0	0	0	0	0	1	0	2790	1014	35	3	161	3	CCDC138	2	109405307	Splice_Site	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	23578617	109405307	133794066	24	2993											
WDR33	55339	hgsc.bcm.edu	37	chr2	128520647	128520647	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tacacgtacctcggagaattCtttcctcatggcaacgaaga	12	10	8	11	3	2	2	1	0	1	2	4	4	3	2	2	2	3	2	2	2	5	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	WDR33,NS,carcinoma,0,1	WDR33	NM_001006623	exon7	c.G713A	p.R238K	AGAATTCTTTCCT	.	45	2	56	0	.	0	T	128520647	C	T	128520647	3	4	23	1	0	0	0	0	1	0	0	0	17347	913	32	3	3415	3	WDR33	2	128520647	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	19115340	128520647	114678726	25	2994											
TUBA3D	113457	broad.mit.edu	37	chr2	132236997	132236997	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acaccatcggcaaggagattGttgacctagtcctggaccgg	10	8	12	11	2	0	2	0	1	0	1	2	4	1	3	4	4	0	2	4	4	2	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	TUBA3D	NM_080386	exon3	c.G343T	p.V115F	GAGATTGTTGACC	.	59	3	80	0	.	60	T	132236997	G	T	132236997	3	4	23	1	0	0	0	0	1	0	0	0	16809	1377	48	3	353	3	TUBA3D	2	132236997	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	3716350	132236997	110962376	26	2995											
FSIP2	401024	hgsc.bcm.edu;bcgsc.ca	37	chr2	186666462	186666462	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atgttatcacattcatttttAgaagatgtcataagaaggct	14	15	7	5	0	3	3	3	0	0	3	3	3	3	3	0	1	0	2	0	1	5	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_173651	exon17	c.A12696T	p.L4232F	ATTTTTAGAAGAT	.	31	12	53	0	.	.	T	186666462	A	T	186666462	3	4	23	1	0	0	0	0	1	0	0	0	6110	417	15	5	12762	5	FSIP2	2	186666462	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	54429465	186666462	56532911	27	2996											
ALS2CR12	130540	hgsc.bcm.edu	37	chr2	202216087	202216087	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tccgtggtcccaagttccagGggtcccagcaggtgcagtag	7	8	14	12	1	0	0	0	0	0	0	4	0	4	0	4	4	2	4	4	4	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ALS2CR12,NS,carcinoma,0,1	ALS2CR12	NM_001127391	exon2	c.C41A	p.P14H	TTCCAGGGGTCCC	.	46	3	32	0	.	0	T	202216087	G	T	202216087	3	4	23	1	0	0	0	0	1	0	0	0	549	1232	43	3	1352	3	ALS2CR12	2	202216087	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	15549625	202216087	40983286	28	2997											
UGT1A9	54600	hgsc.bcm.edu	37	chr2	234581157	234581157	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctctttcctatgtccccagaAttctcttagggttctcagat	7	16	6	12	0	3	2	1	0	3	2	7	2	5	2	3	1	0	1	3	1	3	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	UGT1A9,NS,carcinoma,0,2	UGT1A9	NM_021027	exon1	c.A577C	p.I193L	CCCAGAATTCTCT	.	67	3	74	1	.	0	C	234581157	A	C	234581157	3	2	23	1	0	0	0	0	1	0	0	0	17012	101	4	4	579	4	UGT1A9	2	234581157	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	32365070	234581157	8618216	29	2998											
THUMPD3	25917	bcgsc.ca	37	chr3	9406699	9406699	+	Splice_Site	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttatttctttttcttttaaaGgacagtactgcttttaaaga	11	20	5	5	0	2	1	0	0	2	1	2	2	2	2	0	1	2	2	0	1	6	9	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	THUMPD3	.	.	.	.	TTTAAAGGACAGT	.	23	3	32	0	.	46	T	9406699	T	T	9406699	5	4	23	1	0	0	0	0	0	0	1	0	15944	1014	35	3		3	THUMPD3	3	9406699	Splice_Site	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		9406699	188615731	30	2999											
VHL	7428	hgsc.bcm.edu	37	chr3	10191635	10191635	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggagcgcattgcacatcaaCggatgggagattgaagattt	13	9	13	6	2	1	3	1	1	0	2	1	6	1	5	0	3	3	2	0	3	2	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	VHL,NS,carcinoma,-2,1	VHL	NM_000551	exon3	c.C628A	p.R210R	CATCAACGGATGG	.	23	2	26	0	.	-2	A	10191635	C	A	10191635	2	1	23	1	0	0	0	0	0	0	0	1	17222	527	19	2		2	VHL	3	10191635	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	784936	10191635	187830795	31	3000											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52661362	52661362	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccgtcctcgatatcgtctcTcctggcaagctctttcttct	4	16	6	15	3	4	0	0	0	4	0	10	1	7	0	3	1	1	2	3	1	2	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_018313	exon14	c.A1468T	p.R490X	CGTCTCTCCTGGC	.	47	23	51	0	.	.	A	52661362	T	A	52661362	4	1	23	1	0	0	0	0	0	1	0	0	11538	1559	54	5	3504	5	PBRM1	3	52661362	Nonsense_Mutation	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	42469727	52661362	145361068	32	3001											
C3orf67	200844	hgsc.bcm.edu	37	chr3	58870322	58870322	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaattttatttcagtttggcGaagtttagtcatgtttagca	10	18	9	4	1	2	0	2	0	0	0	2	2	2	0	0	1	1	4	0	1	5	8	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	C3orf67,NS,carcinoma,0,1	C3orf67	NM_198463	exon7	c.C289A	p.R97S	TTTGGCGAAGTTT	.	44	2	64	0	.	0	T	58870322	G	T	58870322	3	4	23	1	0	0	0	0	1	0	0	0	2255	1058	37	2	1442	2	C3orf67	3	58870322	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	6208960	58870322	139152108	33	3002											
CCDC80	151887	hgsc.bcm.edu	37	chr3	112357186	112357186	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacattccccacctgcagctCgtcctccagctgagaggcag	9	7	9	16	1	0	1	0	1	0	1	4	2	3	1	5	1	4	4	5	1	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CCDC80,NS,carcinoma,0,1	CCDC80	NM_199511	exon2	c.G1567T	p.E523X	GCAGCTCGTCCTC	.	37	2	32	0	.	0	A	112357186	C	A	112357186	4	1	23	1	0	0	0	0	0	1	0	0	2874	893	31	2	1313	2	CCDC80	3	112357186	Nonsense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	53486864	112357186	85665244	34	3003											
UBA5	79876	hgsc.bcm.edu	37	chr3	132395425	132395426	+	RNA	INS	-	-	A																															aagcctcttcccttgaaattINSaaaaaaaaattttaactgat																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGAAATTAAAAAA	.	24	11	15	0	.	.	A	132395426	-	A	132395425	6	5	23	0	1	1	1	0	0	0	0	0	16891	1769	61	0		0	UBA5	3	132395425	RNA	INS	-	TCGA-W5-AA38-01A-11D-A417-09	20038239	132395425	65627005	35	3004											
CLSTN2	64084	hgsc.bcm.edu	37	chr3	140178551	140178551	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatgtggatgaaacacGgccccagccctggtgtgaga	10	7	12	12	1	1	2	1	2	0	1	1	4	1	3	4	3	2	0	4	3	1	0	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CLSTN2,NS,carcinoma,0,1	CLSTN2	NM_022131	exon7	c.G1162T	p.G388C	AAACACGGCCCCA	.	38	2	48	0	.	0	T	140178551	G	T	140178551	3	4	23	1	0	0	0	0	1	0	0	0	3585	1116	39	2	1188	2	CLSTN2	3	140178551	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7783126	140178551	57843879	36	3005											
BCHE	590	broad.mit.edu;bcgsc.ca	37	chr3	165547680	165547680	+	Frame_Shift_Del	DEL	C	C	-																															ctggaaaaaatatttttaaaCcttcctgaaattcttttcta																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	BCHE	NM_000055	exon2	c.1142delG	p.G381fs	TTTAAACCTTCCT	.	50	7	89	0	.	136	-	165547680	C	-	165547680	7	5	23	1	0	1	0	1	0	0	0	0	1356	507	18	0	678	0	BCHE	3	165547680	Frame_Shift_Del	DEL	C	TCGA-W5-AA38-01A-11D-A417-09	25369129	165547680	32474750	37	3006											
FYTTD1	84248	hgsc.bcm.edu	37	chr3	197500335	197500335	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	taaatcatcagaaagatactCgtcaggcaacttttcttttc	13	14	5	9	1	4	2	3	0	1	2	6	2	4	2	0	1	2	1	0	1	5	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FYTTD1,NS,carcinoma,0,1	FYTTD1	NM_032288	exon5	c.C559T	p.R187C	GATACTCGTCAGG	.	76	4	97	1	.	0	T	197500335	C	T	197500335	3	4	23	1	0	0	0	0	1	0	0	0	6162	884	31	1	606	1	FYTTD1	3	197500335	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	31952655	197500335	522095	38	3007											
GABRA2	2555	bcgsc.ca	37	chr4	46263983	46263983	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccatcccaagcccatcctCttttggtgaagtaattaaca	11	12	5	13	0	1	1	0	1	1	0	4	1	4	1	4	1	2	1	4	1	4	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	GABRA2	NM_000807	exon9	c.G1019T	p.R340I	CATCCTCTTTTGG	.	22	3	68	0	.	134	A	46263983	A	A	46263983	3	1	23	1	0	0	0	0	1	0	0	0	6196	913	32	3	344	3	GABRA2	4	46263983	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		46263983	144890293	39	3008											
CFI	3426	hgsc.bcm.edu	37	chr4	110663684	110663684	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttttcatagaaacgatttccGtaaaacttagagcagttgct	13	14	7	7	2	1	2	1	0	0	2	2	3	2	2	1	0	4	4	1	0	5	7	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CFI,colon,NS,0,1	CFI	NM_000204	exon12	c.C1497T	p.Y499Y	ATTTCCGTAAAAC	.	34	2	63	0	.	0	A	110663684	G	A	110663684	2	1	23	1	0	0	0	0	0	0	0	1	3311	1140	40	1		1	CFI	4	110663684	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	64399701	110663684	80490592	40	3009											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	134071413	134071413	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcgtggggaatatcgctgaaGatctgggtctggacattaca	10	11	13	7	2	2	2	0	1	2	1	4	4	2	4	0	4	1	1	0	4	4	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_032961	exon1	c.G118C	p.D40H	GCTGAAGATCTGG	.	32	6	79	0	.	.	C	134071413	G	C	134071413	3	2	23	1	0	0	0	0	1	0	0	0	11554	942	33	5	120	5	PCDH10	4	134071413	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	23407729	134071413	57082863	41	3010											
GALNTL6	442117	hgsc.bcm.edu	37	chr4	173804049	173804049	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggaggagaacagtatgaaatCtcttttaaggtaagccccaa	15	9	10	7	0	1	2	0	1	1	1	2	4	1	3	2	3	2	2	2	3	6	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	GALNTL6,NS,carcinoma,0,1	GALNTL6	NM_001034845	exon8	c.C1032T	p.I344I	TGAAATCTCTTTT	.	38	2	66	0	.	0	T	173804049	C	T	173804049	2	4	23	1	0	0	0	0	0	0	0	1	6265	903	32	3		3	GALNTL6	4	173804049	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	39732636	173804049	17350227	42	3011											
F11	2160	bcgsc.ca	37	chr4	187194273	187194273	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagaaacactgccaagagtGaataggacagcagcgatttc	16	6	10	9	1	0	3	0	1	0	2	1	5	0	4	1	1	4	1	1	1	4	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	F11	NM_000128	exon4	c.G267T	p.V89V	AAGAGTGAATAGG	.	21	3	36	0	.	65	T	187194273	T	T	187194273	2	4	23	1	0	0	0	0	0	0	0	1	5365	1277	45	3		3	F11	4	187194273	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	13390224	187194273	3960003	43	3012											
FASTKD3	79072	hgsc.bcm.edu	37	chr5	7867809	7867809	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcgttgtaaagctcctgctgCcatagtgtcaggcagggttt	7	13	12	9	1	1	0	1	0	0	0	3	0	2	0	2	2	3	6	2	2	3	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FASTKD3,bladder,carcinoma,0,1	FASTKD3	NM_024091	exon2	c.G388A	p.A130T	CTGCTGCCATAGT	.	16	2	37	0	.	0	T	7867809	C	T	7867809	3	4	23	1	0	0	0	0	1	0	0	0	5720	739	26	3	1624	3	FASTKD3	5	7867809	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		7867809	173047451	44	3013											
APC	324	hgsc.bcm.edu	37	chr5	112155042	112155042	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaggacaaaaatccaaGtatgttctctatagtgtaca	15	10	8	8	0	1	0	0	0	1	0	3	2	2	2	2	2	1	3	2	2	7	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	APC,colon,carcinoma,0,1	APC	NM_001127511	exon8	c.1258+1G>T	.	ATCCAAGTATGTT	.	34	2	33	0	.	0	T	112155042	G	T	112155042	5	4	23	1	0	0	0	0	0	0	1	0	759	1043	36	3	1347	3	APC	5	112155042	Splice_Site	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	104287233	112155042	68760218	45	3014											
AFF4	27125	ucsc.edu	37	chr5	132219204	132219204	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgaataatttcctgaattGcctggtgacagctttggaga	11	13	11	6	0	0	4	0	3	0	1	1	6	1	4	2	2	2	1	2	2	3	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AFF4	NM_014423	exon20	c.C3192T	p.G1064G	TGAATTGCCTGGT	.	36	4	27	0	.	120	A	132219204	G	A	132219204	2	1	23	1	0	0	0	0	0	0	0	1	358	1306	46	3		3	AFF4	5	132219204	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	20064162	132219204	48696056	46	3015											
TRPC7	57113	hgsc.bcm.edu	37	chr5	135561813	135561813	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaggcacatcttgattCtcattatgagataataaaat	15	15	6	5	0	2	3	1	3	2	1	3	4	2	3	0	1	0	1	0	1	5	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TRPC7,NS,carcinoma,0,2	TRPC7	NM_020389	exon9	c.G2171T	p.R724I	TTGATTCTCATTA	.	47	2	33	0	.	0	A	135561813	C	A	135561813	3	1	23	1	0	0	0	0	1	0	0	0	16645	913	32	3	433	3	TRPC7	5	135561813	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	3342609	135561813	45353447	47	3016											
FAM71B	153745	hgsc.bcm.edu	37	chr5	156590510	156590510	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctccttcagcagcccCtggagtgctcgtggatggag	5	10	13	13	1	1	0	1	0	0	0	4	3	3	3	4	3	4	3	4	3	0	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FAM71B,colon,carcinoma,0,1	FAM71B	NM_130899	exon2	c.G766T	p.G256W	CAGCCCCTGGAGT	.	29	2	24	0	.	0	A	156590510	C	A	156590510	3	1	23	1	0	0	0	0	1	0	0	0	5643	681	24	3	1055	3	FAM71B	5	156590510	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	21028697	156590510	24324750	48	3017											
BPHL	670	hgsc.bcm.edu;bcgsc.ca	37	chr6	3127475	3127475	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taaccaagtggctgtttttaGgaagtggagagactgatttt	11	14	12	4	0	0	2	0	1	0	1	0	5	0	4	1	3	1	2	1	3	4	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_004332	exon3	c.212-1G>T	.	TTTTTAGGAAGTG	.	48	4	35	0	.	.	T	3127475	G	T	3127475	5	4	23	1	0	0	0	0	0	0	1	0	1491	1014	35	3	221	3	BPHL	6	3127475	Splice_Site	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		3127475	167987592	49	3018											
TAP1	6890	hgsc.bcm.edu	37	chr6	32815404	32815404	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggccataggcaatattttCttgaagacttcttccaaata	13	13	6	9	0	2	2	0	1	2	1	3	2	3	2	2	2	0	1	2	2	6	8	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TAP1,rectum,carcinoma,0,1	TAP1	NM_000593	exon9	c.G1969T	p.E657X	TATTTTCTTGAAG	.	17	2	21	0	.	0	A	32815404	C	A	32815404	4	1	23	1	0	0	0	0	0	1	0	0	15607	922	32	3	469	3	TAP1	6	32815404	Nonsense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	29687929	32815404	138299663	50	3019											
VPS52	6293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	33236870	33236870	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgcctggcgatttcgaagtcGaatgttcatggctcctgact	7	13	11	10	3	1	1	1	1	0	0	4	4	2	1	2	2	1	2	2	2	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_022553	exon6	c.C469T	p.R157X	GAAGTCGAATGTT	.	39	13	39	0	.	.	A	33236870	G	A	33236870	4	1	23	1	0	0	0	0	0	1	0	0	17274	1066	37	1	1762	1	VPS52	6	33236870	Nonsense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	421466	33236870	137878197	51	3020											
PPARD	5467	hgsc.bcm.edu	37	chr6	35392430	35392430	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcacccgtgagttcctgCgcagcctccgcaaacccttc	6	10	8	17	3	1	1	1	1	0	0	4	1	3	1	5	0	3	3	5	0	1	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PPARD,caecum,carcinoma,0,1	PPARD	NM_001171818	exon8	c.C952A	p.R318S	TTCCTGCGCAGCC	.	18	2	27	0	.	0	A	35392430	C	A	35392430	3	1	23	1	0	0	0	0	1	0	0	0	12343	768	27	2	987	2	PPARD	6	35392430	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	2155560	35392430	135722637	52	3021											
TTBK1	84630	hgsc.bcm.edu	37	chr6	43222295	43222295	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tctcccccagtcaaactttgCcatgggcaggctgccctcca	7	9	8	17	0	2	0	1	0	1	0	4	0	3	0	5	2	3	2	5	2	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TTBK1,NS,carcinoma,0,1	TTBK1	NM_032538	exon6	c.C482T	p.A161V	ACTTTGCCATGGG	.	24	2	49	0	.	0	T	43222295	C	T	43222295	3	4	23	1	0	0	0	0	1	0	0	0	16738	739	26	3	500	3	TTBK1	6	43222295	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	7829865	43222295	127892772	53	3022											
FOXK1	221937	bcgsc.ca	37	chr7	4796694	4796694	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacgttcccaggaggagcctGggaaggggtccttttggcga	7	8	16	10	2	0	0	0	0	0	0	2	4	2	3	3	6	1	1	3	6	1	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	KIAA0415_ENST00000450194,NS,carcinoma,-2,2	FOXK1	NM_001037165	exon5	c.G1120T	p.G374W	GAGCCTGGGAAGG	.	76	4	91	0	.	64	T	4796694	T	T	4796694	3	4	23	1	0	0	0	0	1	0	0	0	6048	1348	47	3	1138	3	FOXK1	7	4796694	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		4796694	154341969	54	3023											
OGDH	4967	hgsc.bcm.edu	37	chr7	44737336	44737336	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggacaagccaagtgggtgcgGcagaatggcatcgtgttgct	9	8	16	8	2	0	1	0	0	0	1	1	2	0	2	1	4	3	4	1	4	3	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OGDH,colon,carcinoma,0,1	OGDH	NM_002541	exon17	c.G2313A	p.R771R	GGTGCGGCAGAAT	.	18	2	23	0	.	0	A	44737336	G	A	44737336	2	1	23	1	0	0	0	0	0	0	0	1	10887	1190	42	3		3	OGDH	7	44737336	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	39940642	44737336	114401327	55	3024											
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73098119	73098119	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttatgacgagacagaagcccGgaaatacgttcgcaagtgag	14	7	12	8	4	0	4	0	2	0	2	1	6	0	5	1	1	2	2	1	1	5	3	rs148529785	bycluster;alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001202560	exon2	c.G71C	p.R24P	AAGCCCGGAAATA	.	85	24	86	0	.	.	C	73098119	G	C	73098119	3	2	23	1	0	0	0	0	1	0	0	0	17325	1116	39	5	77	5	WBSCR22	7	73098119	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	28360783	73098119	86040544	56	3025											
LRRC4	64101	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	127669004	127669004	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggattatctcaacagtccGggcggctgtgactgtactcc	7	11	11	12	2	1	1	1	1	1	0	4	2	3	2	2	3	2	2	2	3	3	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_022143	exon2	c.C1690A	p.R564R	CAGTCCGGGCGGC	.	34	4	28	0	.	.	T	127669004	G	T	127669004	2	4	23	1	0	0	0	0	0	0	0	1	9042	1115	39	2		2	LRRC4	7	127669004	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	54570885	127669004	31469659	57	3026											
MGAM	8972	hgsc.bcm.edu	37	chr7	141719015	141719015	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaggccacatgtgaccaacGtggctgttgctggaatcccc	8	9	11	13	1	1	1	1	1	0	0	2	2	2	2	4	3	2	3	4	3	2	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MGAM_ENST00000549489,colon,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon4	c.G344T	p.R115L	ACCAACGTGGCTG	.	41	2	38	0	.	0	T	141719015	G	T	141719015	3	4	23	1	0	0	0	0	1	0	0	0	9591	1145	40	2	354	2	MGAM	7	141719015	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	14050011	141719015	17419648	58	3027											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	55537426	55537426	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaattatttttaatcaagaCggcactatgacagttgagat	14	14	7	6	1	2	3	2	2	0	2	2	4	2	3	0	1	0	2	0	1	5	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006269	exon4	c.C984T	p.D328D	TCAAGACGGCACT	.	39	5	51	0	.	.	T	55537426	C	T	55537426	2	4	23	1	0	0	0	0	0	0	0	1	13584	535	19	1		1	RP1	8	55537426	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		55537426	90826596	59	3028											
SLCO5A1	81796	hgsc.bcm.edu	37	chr8	70744391	70744391	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccaggttcccgatgtcaaagCagctgaccagcagccccgac	10	5	10	16	2	1	1	1	1	0	0	2	3	2	1	5	1	4	4	5	1	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SLCO5A1,middle_lobe,carcinoma,0,1	SLCO5A1	NM_030958	exon2	c.G518A	p.C173Y	TCAAAGCAGCTGA	.	41	2	63	0	.	0	T	70744391	C	T	70744391	3	4	23	1	0	0	0	0	1	0	0	0	14786	710	25	3	2064	3	SLCO5A1	8	70744391	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	15206965	70744391	75619631	60	3029											
SNX31	169166	hgsc.bcm.edu	37	chr8	101601166	101601166	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatctgagctctaagttctgGttgagagttctctggggccc	7	13	12	9	0	4	2	0	2	4	1	5	3	4	2	1	3	1	4	1	3	2	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SNX31,NS,carcinoma,0,1	SNX31	NM_152628	exon11	c.C1020A	p.N340K	GTTCTGGTTGAGA	.	40	2	63	0	.	0	T	101601166	G	T	101601166	3	4	23	1	0	0	0	0	1	0	0	0	14955	1252	44	3	318	3	SNX31	8	101601166	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	30856775	101601166	44762856	61	3030											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	104897649	104897649	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agatctccatcagattatgcTgataggcgatctcaacatga	13	11	8	9	1	3	4	2	2	2	2	5	5	3	4	1	1	2	1	1	1	3	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001100117	exon4	c.T822G	p.A274A	TTATGCTGATAGG	.	30	8	40	0	.	.	G	104897649	T	G	104897649	2	3	23	1	0	0	0	0	0	0	0	1	13420	1567	55	4		4	RIMS2	8	104897649	Silent	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	3296483	104897649	41466373	62	3031											
PKN3	29941	ucsc.edu;bcgsc.ca	37	chr9	131475475	131475475	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gcgtggccgaggcgagcttgCcagtgagtagggaaggagct	8	6	19	8	3	0	1	0	1	0	0	0	5	0	3	2	4	3	3	2	4	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PKN3	NM_013355	exon7	c.C980T	p.A327V	AGCTTGCCAGTGA	.	24	4	40	0	.	62	T	131475475	C	T	131475475	3	4	23	1	0	0	0	0	1	0	0	0	12029	739	26	3	1006	3	PKN3	9	131475475	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		131475475	9737956	63	3032											
MPP7	143098	bcgsc.ca	37	chr10	28413008	28413008	+	Silent	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttatcctccactggtatcccGttgacttccctaagttcatc	7	15	5	14	1	1	1	1	1	0	0	6	1	5	1	4	1	0	3	4	1	3	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	MPP7	NM_173496	exon10	c.C567T	p.N189N	TATCCCGTTGACT	.	59	4	53	0	.	60	A	28413008	A	A	28413008	2	1	23	1	0	0	0	0	0	0	0	1	9788	1136	40	1		1	MPP7	10	28413008	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		28413008	107121739	64	3033											
CSGALNACT2	55454	hgsc.bcm.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	8	15	15	3	0	2	4	0	3	2	1	2	6	2	5	0	3	0	2	0	3	1	4	rs79064394	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	78	4	57	0	.	0	T	43659419	G	T	43659419	3	4	23	1	0	0	0	0	1	0	0	0	3964	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	15246411	43659419	91875328	65	3034											
NCOA4	8031	hgsc.bcm.edu;bcgsc.ca	37	chr10	51580885	51580885	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcatttttcttttagttattGggccagttcaattgtcttac	7	21	6	7	0	4	0	2	0	2	0	4	0	4	0	1	1	1	2	1	1	4	9	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001145261	exon5	c.G336T	p.L112F	GTTATTGGGCCAG	.	77	4	69	0	.	.	T	51580885	G	T	51580885	3	4	23	1	0	0	0	0	1	0	0	0	10278	1339	47	3	350	3	NCOA4	10	51580885	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7921466	51580885	83953862	66	3035											
CTNNA3	29119	hgsc.bcm.edu	37	chr10	69281681	69281681	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttttctggaggtcagatttGttggcaacatttttgagaga	9	16	12	4	0	2	3	1	1	1	2	2	5	2	4	0	3	1	3	0	3	1	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_013266	exon5	c.C498A	p.N166K	AGATTTGTTGGCA	.	45	3	57	0	.	.	T	69281681	G	T	69281681	3	4	23	1	0	0	0	0	1	0	0	0	4038	1368	48	3	2245	3	CTNNA3	10	69281681	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	17700796	69281681	66253066	67	3036											
NPM3	10360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103542240	103542240	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agctggggaactcaccatggGttggcaggacagcttgaggt	9	8	16	8	0	1	1	1	1	0	0	1	3	1	3	1	6	3	4	1	6	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006993	exon3	c.C319T	p.P107S	CCATGGGTTGGCA	.	12	7	22	0	.	.	A	103542240	G	A	103542240	3	1	23	1	0	0	0	0	1	0	0	0	10637	1261	44	3	229	3	NPM3	10	103542240	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	34260559	103542240	31992507	68	3037											
PSD	5662	hgsc.bcm.edu	37	chr10	104173619	104173619	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagcttggctctggcctctGcctcctcctcctcccctctc	1	12	6	22	0	3	0	0	0	3	0	8	0	7	0	8	2	2	2	8	2	0	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSD_ENST00000020673,NS,carcinoma,0,2	PSD_ENST00000020673	NM_001270965	exon6	c.C1460T	p.A487V	GCCTCTGCCTCCT	.	31	2	30	0	.	0	A	104173619	G	A	104173619	3	1	23	1	0	0	0	0	1	0	0	0	12695	1319	46	3	1666	3	PSD	10	104173619	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	631379	104173619	31361128	69	3038											
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	106959842	106959842	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tcagccggcattgcaccaagGaggactatcagacctggcac	11	6	11	13	1	2	1	2	0	0	1	2	3	2	3	3	4	2	3	3	4	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_014978	exon15	c.G2095A	p.E699K	ACCAAGGAGGACT	.	39	11	54	0	.	.	A	106959842	G	A	106959842	3	1	23	1	0	0	0	0	1	0	0	0	14986	1175	41	3	2153	3	SORCS3	10	106959842	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	2786223	106959842	28574905	70	3039											
ATRNL1	26033	bcgsc.ca	37	chr10	116853364	116853364	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggttgggatctgtccctcCtgaccggggagcgggactcg	4	8	17	12	4	1	1	0	1	1	0	4	4	3	4	3	5	1	1	3	5	0	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ATRNL1	.	.	.	.	TCCCTCCTGACCG	.	61	4	65	0	.	219	T	116853364	T	T	116853364	2	4	23	1	0	0	0	0	0	0	0	1	1205	696	24	3		3	ATRNL1	10	116853364	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	9893522	116853364	18681383	71	3040											
CLRN3	119467	hgsc.bcm.edu	37	chr10	129676685	129676685	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtcacaaaaacgaaggatgCtgaaaggaagatggagtttc	16	7	13	5	1	1	2	1	1	0	1	2	6	1	5	0	4	2	2	0	4	5	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CLRN3,NS,carcinoma,0,2	CLRN3	NM_152311	exon4	c.410-1G>A	.	AGGATGCTGAAAG	.	46	3	39	0	.	0	T	129676685	C	T	129676685	5	4	23	1	0	0	0	0	0	0	1	0	3582	811	28	3	275	3	CLRN3	10	129676685	Splice_Site	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	12823321	129676685	5858062	72	3041											
FIBIN	387758	hgsc.bcm.edu	37	chr11	27016617	27016617	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agacactggacatctctgtgGggctcagggacaaatacgag	12	7	13	9	1	2	1	1	0	1	1	3	4	2	3	0	4	1	1	0	4	2	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FIBIN,NS,carcinoma,0,1	FIBIN	NM_203371	exon1	c.G544T	p.G182W	TCTGTGGGGCTCA	.	26	3	29	0	.	0	T	27016617	G	T	27016617	3	4	23	1	0	0	0	0	1	0	0	0	5918	1232	43	3	546	3	FIBIN	11	27016617	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		27016617	107989899	73	3042											
OR5AN1	390195	hgsc.bcm.edu	37	chr11	59132147	59132147	+	Silent	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	aacctgtccttcatagatgtCtgctatatcagctccacagt	10	13	6	12	0	3	1	2	0	1	1	5	1	5	1	3	0	3	2	3	0	4	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR5AN1,NS,carcinoma,0,1	OR5AN1	NM_001004729	exon1	c.C216G	p.V72V	AGATGTCTGCTAT	.	35	2	34	0	.	0	G	59132147	C	G	59132147	2	3	23	1	0	0	0	0	0	0	0	1	11190	900	32	5		5	OR5AN1	11	59132147	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	32115530	59132147	75874369	74	3043											
TRPT1	83707	hgsc.bcm.edu	37	chr11	63991664	63991664	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaatcaccccattggcagagCggaagaagggtattccatct	12	8	11	10	1	2	2	1	0	1	2	3	4	3	3	3	3	1	2	3	3	4	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TRPT1,NS,carcinoma,0,1	TRPT1	NM_001160389	exon7	c.G584A	p.R195H	GCAGAGCGGAAGA	.	16	2	6	0	.	0	T	63991664	C	T	63991664	3	4	23	1	0	0	0	0	1	0	0	0	16655	768	27	1	191	1	TRPT1	11	63991664	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	4859517	63991664	71014852	75	3044											
DLG2	1740	hgsc.bcm.edu	37	chr11	84865696	84865696	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gatccactgcaatctgtaagCtaaaataaaagtttaaaaaa	20	10	5	6	0	1	0	0	0	1	0	2	1	2	0	1	0	2	4	1	0	9	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DLG2_ENST00000376104,NS,carcinoma,0,1	DLG2_ENST00000376104	NM_001142699	exon6	c.187-1G>T	.	TGTAAGCTAAAAT	.	19	2	20	0	.	0	A	84865696	C	A	84865696	5	1	23	1	0	0	0	0	0	0	1	0	4583	811	28	3	3042	3	DLG2	11	84865696	Splice_Site	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	20874032	84865696	50140820	76	3045											
MAML2	84441	ucsc.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	0	16	14	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	13	0	0	0	2	rs61901862	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MAML2,rectum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	39	5	34	0	C|0.250;T|0.750	94	T	95825407	C	T	95825407	2	4	23	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825407	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	10959711	95825407	39181109	77	3046											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118499246	118499246	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagcggggacttgcgggtGcctgtcacaagggagcggaa	8	6	17	10	3	1	0	1	0	0	0	2	3	2	3	2	5	4	0	2	5	2	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001144758	exon6	c.G1707T	p.V569V	GCGGGTGCCTGTC	.	50	13	73	0	.	.	T	118499246	G	T	118499246	2	4	23	1	0	0	0	0	0	0	0	1	11899	1306	46	3		3	PHLDB1	11	118499246	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	22673839	118499246	16507270	78	3047											
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	128354828	128354828	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gagggtctcggagaatgaccGaggggtagtcattctcatac	10	9	14	8	2	3	2	2	1	2	1	5	5	3	2	1	4	1	1	1	4	3	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ETS1_ENST00000392668,NS,carcinoma,0,2	ETS1_ENST00000392668	NM_001143820	exon7	c.C752T	p.S251L	ATGACCGAGGGGT	.	25	9	36	0	.	0	A	128354828	G	A	128354828	3	1	23	1	0	0	0	0	1	0	0	0	5303	1059	37	1	721	1	ETS1	11	128354828	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	9855582	128354828	6651688	79	3048											
APLP2	334	ucsc.edu;bcgsc.ca	37	chr11	129992294	129992294	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaggggaggaagtggtggagGaccgagattactactatgac	13	7	16	5	1	0	2	0	1	0	1	0	7	0	6	1	6	2	0	1	6	5	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	APLP2	NM_001243299	exon6	c.G838T	p.D280Y	GTGGAGGACCGAG	.	40	4	48	0	.	71	T	129992294	G	T	129992294	3	4	23	1	0	0	0	0	1	0	0	0	776	1174	41	3	830	3	APLP2	11	129992294	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	1637466	129992294	5014222	80	3049											
DCP1B	196513	hgsc.bcm.edu	37	chr12	2062323	2062323	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcctaattggaagcttctcTtgctgctgctgctgctgctg	4	15	11	11	0	1	0	0	0	1	0	2	1	1	1	1	1	8	7	1	1	2	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	27	2	27	1	.	63	C	2062323	T	C	2062323	2	2	23	1	0	0	0	0	0	0	0	1	4322	1606	56	4		4	DCP1B	12	2062323	Silent	SNP	T	TCGA-W5-AA38-01A-11D-A417-09		2062323	131789572	81	3050											
DCP1B	196513	hgsc.bcm.edu	37	chr12	2062353	2062353	+	Missense_Mutation	SNP	G	G	C																															tgctgctgctgctgctgctgGtggagagtctgcggaggctc																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DCP1B,rectum,carcinoma,0,1	DCP1B	NM_152640	exon7	c.C753G	p.H251Q	CTGCTGGTGGAGA	.	41	3	35	2	.	0	C	2062353	G	C	2062353	3	2	23	1	0	0	0	0	1	0	0	0	4322	1252	44	5	1112	5	DCP1B	12	2062353	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	30	2062353	131789542	82	3051	12	2									
DCP1B	196513	hgsc.bcm.edu	37	chr12	2062357	2062357	+	Missense_Mutation	SNP	A	A	T																															gctgctgctgctgctggtggAgagtctgcggaggctccaca																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DCP1B,NS,haematopoietic_neoplasm,0,1	DCP1B	NM_152640	exon7	c.T749A	p.L250H	TGGTGGAGAGTCT	.	44	4	38	2	.	0	T	2062357	A	T	2062357	3	4	23	1	0	0	0	0	1	0	0	0	4322	304	11	5	1116	5	DCP1B	12	2062357	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	4	2062357	131789538	83	3052	12	2									
ANO6	196527	hgsc.bcm.edu	37	chr12	45803228	45803228	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aacaggactaccatctgcagCctatgggcaaactgggatta	13	8	10	10	0	1	0	0	0	1	0	1	2	1	2	2	3	5	2	2	3	5	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001204803	exon17	c.C2032T	p.P678S	CTGCAGCCTATGG	.	80	4	108	0	.	.	T	45803228	C	T	45803228	3	4	23	1	0	0	0	0	1	0	0	0	695	739	26	3	2051	3	ANO6	12	45803228	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	43740871	45803228	88048667	84	3053											
MLL2	8085	hgsc.bcm.edu	37	chr12	49420526	49420526	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccacattcatcagtgcccCgccctgggtctcatacacct	7	10	6	18	1	3	0	3	0	1	0	5	0	4	0	5	1	2	0	5	1	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MLL2_ENST00000301067,colon,carcinoma,0,2	MLL2_ENST00000301067	NM_003482	exon48	c.G15223A	p.G5075R	GTGCCCCGCCCTG	.	15	2	25	0	.	0	T	49420526	C	T	49420526	3	4	23	1	0	0	0	0	1	0	0	0	9669	652	23	1	1418	1	MLL2	12	49420526	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	3617298	49420526	84431369	85	3054											
OR6C2	341416	hgsc.bcm.edu	37	chr12	55846882	55846882	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accttgaggaacaagcaagtGaaacaagctttcagtgactc	15	8	9	9	0	1	3	1	3	0	0	2	4	1	4	1	1	4	2	1	1	5	2	rs142733366	alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR6C2,shoulder,malignant_melanoma,0,1	OR6C2	NM_054105	exon1	c.G885T	p.V295V	GCAAGTGAAACAA	.	35	2	25	0	.	0	T	55846882	G	T	55846882	2	4	23	1	0	0	0	0	0	0	0	1	11238	1277	45	3		3	OR6C2	12	55846882	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	6426356	55846882	78005013	86	3055											
XPOT	11260	hgsc.bcm.edu	37	chr12	64824051	64824051	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagcagactgtcttaaccatGctgttggatttgcaaggtaa	11	13	10	7	0	1	1	0	0	1	1	1	2	1	2	1	2	4	5	1	2	4	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	XPOT,NS,carcinoma,0,1	XPOT	NM_007235	exon17	c.G1960T	p.A654S	AACCATGCTGTTG	.	47	2	59	0	.	0	T	64824051	G	T	64824051	3	4	23	1	0	0	0	0	1	0	0	0	17510	1319	46	3	2022	3	XPOT	12	64824051	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	8977169	64824051	69027844	87	3056											
BEST3	144453	bcgsc.ca	37	chr12	70091527	70091527	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgaggagtaacctatGaaatccaaaaaaagttgcat	17	9	7	8	0	0	2	0	2	0	0	1	3	1	3	3	1	2	3	3	1	6	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	BEST3	NM_032735	exon2	c.C52A	p.H18N	ACCTATGAAATCC	.	58	4	72	0	.	129	T	70091527	T	T	70091527	3	4	23	1	0	0	0	0	1	0	0	0	1404	1290	45	3	1990	3	BEST3	12	70091527	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	5267476	70091527	63760368	88	3057											
TDG	6996	hgsc.bcm.edu	37	chr12	104374675	104374675	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttgttttgttttatagattgGcataaacccgggactaatgg	10	16	10	5	1	0	1	0	0	0	1	0	2	0	2	1	3	1	3	1	3	5	9	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003211	exon4	c.G413A	p.G138D	AGATTGGCATAAA	.	79	4	98	0	.	.	A	104374675	G	A	104374675	3	1	23	1	0	0	0	0	1	0	0	0	15784	1203	42	3	427	3	TDG	12	104374675	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	34283148	104374675	29477220	89	3058											
PRDM4	11108	hgsc.bcm.edu	37	chr12	108145794	108145794	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cactgggatgaagactttggGcaccatgtgtgttcacagag	10	10	13	8	0	1	3	1	1	0	2	1	4	1	4	1	2	0	2	1	2	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PRDM4,NS,carcinoma,0,1	PRDM4	NM_012406	exon5	c.C524A	p.A175D	CTTTGGGCACCAT	.	50	2	56	0	.	0	T	108145794	G	T	108145794	3	4	23	1	0	0	0	0	1	0	0	0	12511	1203	42	3	1913	3	PRDM4	12	108145794	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	3771119	108145794	25706101	90	3059											
TUBA3C	7278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	19751499	19751499	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgccgacatatgtcatagatGgcttcattgtcgaccatgaa	11	11	9	10	3	2	2	2	1	0	1	3	4	2	2	2	1	0	1	2	1	3	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006001	exon4	c.C624A	p.A208A	ATAGATGGCTTCA	.	45	8	58	0	.	.	T	19751499	G	T	19751499	2	4	23	1	0	0	0	0	0	0	0	1	16808	1335	47	3		3	TUBA3C	13	19751499	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		19751499	95418379	91	3060											
MPHOSPH8	54737	hgsc.bcm.edu	37	chr13	20233249	20233249	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaattttgctgcaacagatgCaattccaagtagtgagtagt	13	12	10	6	0	0	2	0	1	0	1	1	3	1	2	1	0	4	5	1	0	6	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MPHOSPH8,NS,carcinoma,0,1	MPHOSPH8	NM_017520	exon6	c.C1691T	p.A564V	CAGATGCAATTCC	.	47	2	92	0	.	0	T	20233249	C	T	20233249	3	4	23	1	0	0	0	0	1	0	0	0	9776	710	25	3	1713	3	MPHOSPH8	13	20233249	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	481750	20233249	94936629	92	3061											
F7	2155	hgsc.bcm.edu	37	chr13	113770013	113770013	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctgtgtgaacgagaacggcgGctgtgagcagtactgcagtg	9	8	16	8	3	0	3	0	2	0	1	0	4	0	3	0	2	5	4	0	2	3	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	F7,NS,carcinoma,0,1	F7	NM_000131	exon6	c.G470T	p.G157V	ACGGCGGCTGTGA	.	21	2	34	0	.	0	T	113770013	G	T	113770013	3	4	23	1	0	0	0	0	1	0	0	0	5377	1203	42	3	492	3	F7	13	113770013	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	93536764	113770013	1399865	93	3062											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38724339	38724339	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggcaccccggtcccccCaagggtcggctgtccttccc	3	7	13	18	2	0	0	0	0	0	0	4	0	3	0	7	5	0	2	7	5	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_175060	exon1	c.G889A	p.G297R	TCCCCCCAAGGGT	.	12	6	27	0	.	.	T	38724339	C	T	38724339	3	4	23	1	0	0	0	0	1	0	0	0	3522	594	21	3	587	3	CLEC14A	14	38724339	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		38724339	68625201	94	3063											
GPHN	10243	hgsc.bcm.edu	37	chr14	67635650	67635650	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	actgcttggttgactttcagGgaatcctgtatcggctgtgg	6	14	13	8	1	1	1	1	1	0	0	3	2	2	2	1	4	1	4	1	4	2	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	GPHN_ENST00000478722,colon,carcinoma,0,1	GPHN_ENST00000478722	NM_020806	exon21	c.G1976T	p.G659V	TTTCAGGGAATCC	.	30	3	28	0	.	0	T	67635650	G	T	67635650	3	4	23	1	0	0	0	0	1	0	0	0	6650	1246	43	3	2058	3	GPHN	14	67635650	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	28911311	67635650	39713890	95	3064											
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	25599825	25599825	+	Frame_Shift_Del	DEL	A	A	-																															tagtcagaataaagattgacAaattcctgtagaaaacatta																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_000462	exon11	c.2140delG	p.V714fs	ATTGACAAATTCC	.	70	17	115	0	.	.	-	25599825	A	-	25599825	7	5	23	1	0	1	0	1	0	0	0	0	16940	127	5	0	504	0	UBE3A	15	25599825	Frame_Shift_Del	DEL	A	TCGA-W5-AA38-01A-11D-A417-09		25599825	76931567	96	3065											
FAM98B	283742	hgsc.bcm.edu	37	chr15	38776827	38776827	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggtggtggtggTggtggtggaggaggtggata	4	11	26	0	0	0	0	0	0	0	0	0	3	0	3	0	13	0	0	0	13	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FAM98B_ENST00000397609,NS,carcinoma,0,1	FAM98B_ENST00000397609	NM_173611	exon8	c.T1269A	p.G423G	TGGTGGTGGTGGT	.	10	2	9	0	.	0	A	38776827	T	A	38776827	2	1	23	1	0	0	0	0	0	0	0	1	5690	1683	59	5		5	FAM98B	15	38776827	Silent	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	13177002	38776827	63754565	97	3066											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64968453	64968453	+	Missense_Mutation	SNP	C	C	A																															atccaatactctggtaccgaCaggtaactgttgccctggga																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_015042	exon4	c.C3400A	p.Q1134K	TACCGACAGGTAA	.	35	12	45	0	.	.	A	64968453	C	A	64968453	3	1	23	1	0	0	0	0	1	0	0	0	18092	479	17	3	3414	3	ZNF609	15	64968453	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	26191626	64968453	37562939	98	3067	13	2									
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64968457	64968457	+	Splice_Site	SNP	T	T	G																															aatactctggtaccgacaggTaactgttgccctgggaggaa																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_015042	exon4	c.3402+2T>G	.	GACAGGTAACTGT	.	36	12	44	0	.	.	G	64968457	T	G	64968457	5	3	23	1	0	0	0	0	0	0	1	0	18092	1652	57	4	3418	4	ZNF609	15	64968457	Splice_Site	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	4	64968457	37562935	99	3068	13	2									
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	90972899	90972899	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atgagattggattgcctaagGtaacttacctgagataatag	14	12	10	5	0	0	2	0	2	0	2	0	5	0	3	2	2	3	1	2	2	5	7	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003870	exon4	c.390+1G>T	.	CCTAAGGTAACTT	.	41	4	34	0	.	.	T	90972899	G	T	90972899	5	4	23	1	0	0	0	0	0	0	1	0	7858	1275	44	3	405	3	IQGAP1	15	90972899	Splice_Site	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	26004442	90972899	11558493	100	3069											
DNASE1L2	1775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2287818	2287818	+	Silent	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gactgcagctatgtgcgggcGcaggactgggccgccatccg	6	6	16	13	4	0	0	0	0	0	0	1	2	1	1	3	3	3	3	3	3	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001374	exon6	c.G642C	p.A214A	GCGGGCGCAGGAC	.	19	4	32	0	.	.	C	2287818	G	C	2287818	2	2	23	1	0	0	0	0	0	0	0	1	4689	1074	38	5		5	DNASE1L2	16	2287818	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		2287818	88066935	101	3070											
PPL	5493	bcgsc.ca	37	chr16	4938984	4938984	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agtttcccggctcacctttaCagcttgctggtactgctggg	5	13	11	12	1	1	0	1	0	0	0	2	0	2	0	2	3	5	6	2	3	2	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PPL	NM_002705	exon19	c.G2392A	p.V798I	CCTTTACAGCTTG	.	57	4	50	0	.	168	T	4938984	T	T	4938984	3	4	23	1	0	0	0	0	1	0	0	0	12383	478	17	3	2894	3	PPL	16	4938984	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	2651166	4938984	85415769	102	3071											
HS3ST4	9951	hgsc.bcm.edu	37	chr16	26147094	26147094	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggccatctctgactacaCgcagacactgtcaaagaaac	14	6	8	13	1	2	3	1	1	1	2	3	3	2	3	1	1	2	1	1	1	3	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	HS3ST4_ENST00000331351,NS,carcinoma,0,4	HS3ST4_ENST00000331351	NM_006040	exon2	c.C896T	p.T299M	ACTACACGCAGAC	.	28	2	26	0	.	0	T	26147094	C	T	26147094	3	4	23	1	0	0	0	0	1	0	0	0	7408	536	19	1	902	1	HS3ST4	16	26147094	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	21208110	26147094	64207659	103	3072											
AMFR	267	ucsc.edu;bcgsc.ca	37	chr16	56442015	56442015	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggctgctcatcggcgtggtgGgcgagaaggaaagctgaaat	10	7	17	7	3	1	2	1	1	0	1	2	4	1	3	0	5	2	3	0	5	3	0	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AMFR	NM_001144	exon4	c.C527A	p.P176H	GTGGTGGGCGAGA	.	28	4	25	0	.	40	T	56442015	G	T	56442015	3	4	23	1	0	0	0	0	1	0	0	0	567	1232	43	3	1448	3	AMFR	16	56442015	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	30294921	56442015	33912738	104	3073											
GLG1	2734	hgsc.bcm.edu;bcgsc.ca	37	chr16	74526937	74526937	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggaaggttttccacattgcaCcggtatttcttcaagtcact	9	14	8	10	1	3	0	2	0	1	0	4	1	4	1	2	3	1	3	2	3	3	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001145667	exon7	c.G1152A	p.R384R	ATTGCACCGGTAT	.	51	4	63	0	.	.	T	74526937	C	T	74526937	2	4	23	1	0	0	0	0	0	0	0	1	6478	494	18	3		3	GLG1	16	74526937	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	18084922	74526937	15827816	105	3074											
MYH1	4619	hgsc.bcm.edu	37	chr17	10398547	10398547	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggccttctcttctgcattgcGggcttcctggatgatgtctt	3	16	11	11	1	3	1	0	1	3	0	5	2	4	2	2	3	2	2	2	3	0	5	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MYH1,NS,carcinoma,0,1	MYH1	NM_005963	exon36	c.C5257T	p.R1753C	CATTGCGGGCTTC	.	47	2	74	0	.	0	A	10398547	G	A	10398547	3	1	23	1	0	0	0	0	1	0	0	0	10077	1116	39	1	582	1	MYH1	17	10398547	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		10398547	70796663	106	3075											
GPR179	440435	broad.mit.edu	37	chr17	36491145	36491145	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccgttcgagacagaaacagCtgcagcactctgcgagggtt	10	7	13	11	3	1	2	0	0	1	2	2	4	1	2	1	1	5	5	1	1	1	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	GPR179	NM_001004334	exon7	c.G1416A	p.Q472Q	AAACAGCTGCAGC	.	5	2	12	0	.	170	T	36491145	C	T	36491145	2	4	23	1	0	0	0	0	0	0	0	1	6714	796	28	3		3	GPR179	17	36491145	Silent	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	26092598	36491145	44704065	107	3076											
ZPBP2	124626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38028702	38028702	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gccattctgttgaaattccaGaacatggcctcatacatgag	12	11	8	10	0	2	3	1	2	1	1	3	3	3	3	3	1	2	1	3	1	3	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_199321	exon5	c.G586C	p.E196Q	ATTCCAGAACATG	.	43	6	34	0	.	.	C	38028702	G	C	38028702	3	2	23	1	0	0	0	0	1	0	0	0	18262	943	33	5	604	5	ZPBP2	17	38028702	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	1537557	38028702	43166508	108	3077											
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38128427	38128427	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	catgcaaaccttccctcctgGaggtaagtgaaattgcttac	11	11	8	11	0	0	1	0	1	0	0	2	2	2	2	3	2	4	3	3	2	4	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_178171	exon6	c.G701A	p.G234E	CTCCTGGAGGTAA	.	40	8	43	0	.	.	A	38128427	G	A	38128427	3	1	23	1	0	0	0	0	1	0	0	0	6857	1174	41	3	719	3	GSDMA	17	38128427	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	99725	38128427	43066783	109	3078											
WIPF2	147179	hgsc.bcm.edu	37	chr17	38421061	38421061	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	agagagaaacccttgccaccGacgcctggacaaaggcttca	13	5	10	13	2	1	2	1	0	0	2	1	5	1	3	4	2	2	1	4	2	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_133264	exon5	c.G633A	p.P211P	GCCACCGACGCCT	.	45	4	60	0	.	.	A	38421061	G	A	38421061	2	1	23	1	0	0	0	0	0	0	0	1	17428	1045	37	1		1	WIPF2	17	38421061	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	292634	38421061	42774149	110	3079											
PLEKHH3	79990	broad.mit.edu	37	chr17	40823370	40823370	+	Splice_Site	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttctctggcctcaccTcccccgccgtggtgtgggag	2	10	13	16	2	2	0	1	0	1	0	4	1	3	1	6	4	0	0	6	4	0	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PLEKHH3	NM_024927	exon8	c.A1283G	p.E428G	CTCACCTCCCCCG	.	81	13	88	12	.	49	C	40823370	T	C	40823370	5	2	23	1	0	0	0	0	0	0	1	0	12126	1565	54	4	1122	4	PLEKHH3	17	40823370	Splice_Site	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	2402309	40823370	40371840	111	3080											
ENOSF1	55556	hgsc.bcm.edu	37	chr18	674365	674365	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatctggatactggtgtttCtttacagattcctccttcat	7	17	6	11	0	3	1	1	0	2	1	5	2	5	2	3	2	2	1	3	2	2	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_202758	exon15	c.G1293T	p.K431N	GTGTTTCTTTACA	.	62	3	54	0	.	.	A	674365	C	A	674365	3	1	23	1	0	0	0	0	1	0	0	0	5153	912	32	3	63	3	ENOSF1	18	674365	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		674365	77402883	112	3081											
SLC39A6	25800	ucsc.edu	37	chr18	33702188	33702188	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tggtcctcttttcatttccaTtgctggttcttcatggctat	4	20	7	10	0	4	0	2	0	2	0	6	0	6	0	2	3	1	3	2	3	1	7	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	SLC39A6	NM_012319	exon5	c.A1186G	p.M396V	TTTCCATTGCTGG	.	24	4	14	0	.	81	C	33702188	T	C	33702188	3	2	23	1	0	0	0	0	1	0	0	0	14677	1493	52	4	1117	4	SLC39A6	18	33702188	Missense_Mutation	SNP	T	TCGA-W5-AA38-01A-11D-A417-09	33027823	33702188	44375060	113	3082											
MOCOS	55034	broad.mit.edu	37	chr18	33767560	33767560	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ggaccttcgcgggttcccggGacccgagcgcaccgcggcta	5	5	15	16	7	0	0	0	0	0	0	2	3	1	2	4	4	1	3	4	4	1	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	MOCOS	NM_017947	exon1	c.G58A	p.D20N	TCCCGGGACCCGA	.	31	8	31	0	.	84	A	33767560	G	A	33767560	3	1	23	1	0	0	0	0	1	0	0	0	9738	1174	41	3	60	3	MOCOS	18	33767560	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	65372	33767560	44309688	114	3083											
PSTPIP2	9050	hgsc.bcm.edu	37	chr18	43578790	43578790	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tactgcggtctttgaagttgCcagtttcacaaaaagctgtg	10	13	10	8	1	2	1	1	1	1	0	2	1	2	1	1	1	4	3	1	1	4	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSTPIP2,NS,carcinoma,0,1	PSTPIP2	NM_024430	exon8	c.G532A	p.A178T	AAGTTGCCAGTTT	.	55	3	67	0	.	0	T	43578790	C	T	43578790	3	4	23	1	0	0	0	0	1	0	0	0	12771	739	26	3	500	3	PSTPIP2	18	43578790	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	9811230	43578790	34498458	115	3084											
PHLPP1	23239	hgsc.bcm.edu	37	chr18	60562374	60562374	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgcgatcagtcccggcagccGttggagtgatgcacaagtgt	8	9	14	10	3	1	1	1	1	0	0	2	3	2	2	2	2	3	3	2	2	1	1	rs376292612		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PHLPP1_ENST00000262719,NS,carcinoma,0,6	PHLPP1_ENST00000262719	NM_194449	exon5	c.G2197A	p.V733I	GCAGCCGTTGGAG	.	40	2	58	0	.	0	A	60562374	G	A	60562374	3	1	23	1	0	0	0	0	1	0	0	0	11902	1145	40	1	2215	1	PHLPP1	18	60562374	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	16983584	60562374	17514874	116	3085											
SERPINB13	5275	hgsc.bcm.edu	37	chr18	61260205	61260205	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gggttgaaagcaaaacaaatGgtagagtatgggtgggtcat	14	9	15	3	0	1	2	1	1	0	1	1	2	1	2	0	4	2	4	0	4	6	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SERPINB13,NS,carcinoma,0,1	SERPINB13	NM_012397	exon5	c.G472T	p.E158X	ACAAATGGTAGAG	.	40	2	49	0	.	0	T	61260205	G	T	61260205	4	4	23	1	0	0	0	0	0	1	0	0	14154	1362	47	3	486	3	SERPINB13	18	61260205	Nonsense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	697831	61260205	16817043	117	3086											
TLE2	7089	hgsc.bcm.edu	37	chr19	3011031	3011031	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctcaccgacgctgtccGtggaaggtgctggcttggca	5	9	16	11	3	1	0	1	0	0	0	2	2	2	1	2	5	2	5	2	5	1	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TLE2,colon,carcinoma,0,1	TLE2	NM_001144761	exon13	c.C1043T	p.T348M	CTGTCCGTGGAAG	.	42	2	59	0	.	0	A	3011031	G	A	3011031	3	1	23	1	0	0	0	0	1	0	0	0	15999	1145	40	1	1266	1	TLE2	19	3011031	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		3011031	56117952	118	3087											
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	10941703	10941703	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ccaccattatccgcccagccGagccatccctgctcgactag	8	7	7	19	3	0	0	0	0	0	0	3	2	2	0	7	0	3	1	7	0	2	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001005361	exon21	c.G2593A	p.E865K	CCAGCCGAGCCAT	.	27	8	28	0	.	.	A	10941703	G	A	10941703	3	1	23	1	0	0	0	0	1	0	0	0	4699	1059	37	1	2818	1	DNM2	19	10941703	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7930672	10941703	48187280	119	3088											
ZNF99	7652	hgsc.bcm.edu	37	chr19	22940945	22940945	+	Missense_Mutation	SNP	C	C	A																															cacatttgtagggtttctccCcagtatgaattgctttatgt																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF99,right_upper_lobe,carcinoma,0,2	ZNF99	NM_001080409	exon4	c.G1766T	p.G589V	TTCTCCCCAGTAT	.	54	3	55	0	.	0	A	22940945	C	A	22940945	3	1	23	1	0	0	0	0	1	0	0	0	18246	623	22	3	1631	3	ZNF99	19	22940945	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	11999242	22940945	36188038	120	3089	14	2									
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	22940952	22940952	+	Missense_Mutation	SNP	G	G	T																															gtagggtttctccccagtatGaattgctttatgtctagtaa																								novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001080409	exon4	c.C1759A	p.H587N	CAGTATGAATTGC	.	53	5	52	0	.	.	T	22940952	G	T	22940952	3	4	23	1	0	0	0	0	1	0	0	0	18246	1290	45	3	1638	3	ZNF99	19	22940952	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7	22940952	36188031	121	3090	14	2									
ZNF527	84503	bcgsc.ca	37	chr19	37879999	37879999	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccttgctcaacatcagAggatccacactggagagaaa	14	7	8	12	0	3	2	3	0	0	2	4	5	4	4	2	2	2	1	2	2	2	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ZNF527	NM_032453	exon5	c.A1048G	p.R350G	CATCAGAGGATCC	.	14	3	27	0	.	78	G	37879999	G	G	37879999	3	3	23	1	0	0	0	0	1	0	0	0	18025	295	11	4	1062	4	ZNF527	19	37879999	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	14939047	37879999	21248984	122	3091											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	43674291	43674291	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acgtcctattcctgaaggagCtgtcatggaaagaaaagtaa	15	9	10	7	1	1	2	1	1	0	1	3	4	3	4	2	2	1	2	2	2	6	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_002781	exon6	c.965-1G>A	.	AAGGAGCTGTCAT	.	62	5	60	0	.	.	T	43674291	C	T	43674291	5	4	23	1	0	0	0	0	0	0	1	0	12707	811	28	3	47	3	PSG5	19	43674291	Splice_Site	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	5794292	43674291	15454692	123	3092											
CEACAM20	125931	broad.mit.edu	37	chr19	45017502	45017503	+	RNA	DEL	GC	GC	-																															agattgtggtttttggttttGcttttttttttttttttttt																								rs372255103	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	CEACAM20	.	.	.	.	GGTTTTGCTTTTT	.	7	3	5	0	.	31	-	45017503	GC	-	45017502	6	5	23	0	1	1	0	1	0	0	0	0	3213	1334	46	0		0	CEACAM20	19	45017502	RNA	DEL	GC	TCGA-W5-AA38-01A-11D-A417-09	1343211	45017502	14111481	124	3093											
ZNF480	147657	hgsc.bcm.edu	37	chr19	52825571	52825571	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaggccttctataggattgcGctccttgtacgacatcagaa	11	11	9	10	2	2	1	1	0	1	1	3	3	3	2	2	2	2	2	2	2	5	6	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF480_ENST00000468240,NS,carcinoma,0,2	ZNF480_ENST00000468240	NM_144684	exon5	c.G1068T	p.A356A	GATTGCGCTCCTT	.	41	2	39	0	.	0	T	52825571	G	T	52825571	2	4	23	1	0	0	0	0	0	0	0	1	17992	1074	38	2		2	ZNF480	19	52825571	Silent	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	7808069	52825571	6303412	125	3094											
ZNF135	7694	hgsc.bcm.edu	37	chr19	58578438	58578438	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	catggggaacacgtggaaaaAgggagaagccagacctaaat	17	4	13	7	1	0	2	0	0	0	2	0	5	0	4	2	4	2	0	2	4	6	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2	ZNF135_ENST00000401053	NM_007134	exon4	c.A658G	p.R220G	GGAAAAAGGGAGA	.	54	3	79	0	.	0	G	58578438	A	G	58578438	3	3	23	1	0	0	0	0	1	0	0	0	17783	63	3	4	789	4	ZNF135	19	58578438	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	5752867	58578438	550545	126	3095											
PSMF1	9491	hgsc.bcm.edu	37	chr20	1108090	1108090	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatatggctcacagcaagtgGcagacttgaccctgaacttg	12	9	10	10	0	1	3	1	2	0	1	1	3	1	3	1	2	2	3	1	2	4	3	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSMF1,caecum,carcinoma,0,1	PSMF1	NM_006814	exon3	c.G304A	p.A102T	CAAGTGGCAGACT	.	46	2	46	0	.	0	A	1108090	G	A	1108090	3	1	23	1	0	0	0	0	1	0	0	0	12759	1203	42	3	314	3	PSMF1	20	1108090	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09		1108090	61917430	127	3096											
PLCG1	5335	broad.mit.edu	37	chr20	39793975	39793975	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaactctatcaagaatGgcatcctctacctggaggac	12	9	8	12	0	4	1	2	0	2	1	5	3	5	3	2	3	3	2	2	3	5	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PLCG1	NM_182811	exon14	c.G1477A	p.G493S	AAGAATGGCATCC	.	29	3	18	0	.	111	A	39793975	G	A	39793975	3	1	23	1	0	0	0	0	1	0	0	0	12083	1348	47	3	1531	3	PLCG1	20	39793975	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	38685885	39793975	23231545	128	3097											
BAGE	85319	broad.mit.edu	37	chr21	11096543	11096544	+	RNA	DEL	AG	AG	-																															ttttgttttgtttttgagacAgagtctccctctgtcaccca																								rs55694987	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGAGACAGAGTCT	.	6	3	7	0	.	.	-	11096544	AG	-	11096543	6	5	23	0	1	1	0	1	0	0	0	0	1289	203	7	0		0	BAGE	21	11096543	RNA	DEL	AG	TCGA-W5-AA38-01A-11D-A417-09		11096543	37033352	129	3098											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	38460547	38460547	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accaatttctgtcctgcaagAttattgcgatgccattaaaa	13	13	6	9	1	1	1	0	0	1	1	2	2	2	1	3	0	3	1	3	0	5	4	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001001894	exon4	c.A239G	p.D80G	TGCAAGATTATTG	.	32	10	27	0	.	.	G	38460547	A	G	38460547	3	3	23	1	0	0	0	0	1	0	0	0	16759	333	12	4	249	4	TTC3	21	38460547	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	27364004	38460547	9669348	130	3099											
CECR2	27443	hgsc.bcm.edu	37	chr22	18016909	18016909	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccccatgagagaggaaaaaaAgactaaagacctgtgagtat	18	6	10	7	0	0	5	0	2	0	3	0	7	0	6	3	1	0	1	3	1	6	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CECR2,NS,carcinoma,0,1	CECR2	.	p.K388R	.	.	AAAAAAAGACTAA	.	54	3	81	0	.	0	G	18016909	A	G	18016909	3	3	23	1	0	0	0	0	1	0	0	0	3228	72	3	4	1196	4	CECR2	22	18016909	Missense_Mutation	SNP	A	TCGA-W5-AA38-01A-11D-A417-09		18016909	33287657	131	3100											
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	31854517	31854517	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcattaaagtcaaagtctcCtggggactgctcaggcaaga	12	9	10	10	0	4	1	3	0	1	1	5	2	4	2	1	3	1	2	1	3	4	1	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_019843	exon7	c.G907T	p.G303X	AGTCTCCTGGGGA	.	112	13	119	0	.	.	A	31854517	C	A	31854517	4	1	23	1	0	0	0	0	0	1	0	0	5063	690	24	3	2105	3	EIF4ENIF1	22	31854517	Nonsense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09	13837608	31854517	19450049	132	3101											
HUWE1	10075	hgsc.bcm.edu	37	chrX	53570921	53570921	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgctagctgagcctaaacCggaggaacctgggagaaaga	13	5	14	9	1	0	3	0	1	0	2	0	6	0	5	3	3	5	3	3	3	5	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_031407	exon73	c.G11260T	p.G3754C	CTAAACCGGAGGA	.	73	3	68	0	.	.	A	53570921	C	A	53570921	3	1	23	1	0	0	0	0	1	0	0	0	7505	652	23	2	1912	2	HUWE1	23	53570921	Missense_Mutation	SNP	C	TCGA-W5-AA38-01A-11D-A417-09		53570921	101699639	133	3102											
TCEAL2	140597	broad.mit.edu	37	chrX	101382096	101382096	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagccagagagagggggAagggcagagggtgaaggaga	15	1	22	3	0	0	5	0	1	0	4	0	9	0	7	1	6	1	1	1	6	3	0	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	TCEAL2	NM_080390	exon3	c.A294G	p.G98G	AGGGGGAAGGGCA	.	50	3	41	0	.	27	G	101382096	A	G	101382096	2	3	23	1	0	0	0	0	0	0	0	1	15731	233	9	4		4	TCEAL2	23	101382096	Silent	SNP	A	TCGA-W5-AA38-01A-11D-A417-09	47811175	101382096	53888464	134	3103											
MTM1	4534	hgsc.bcm.edu	37	chrX	149814336	149814336	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gacccagcgtaaatgcagtgGccaacaaggtgagtggactt	12	7	13	9	1	0	1	0	1	0	0	0	3	0	2	2	3	3	2	2	3	4	2	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_000252	exon9	c.G859A	p.A287T	GCAGTGGCCAACA	.	45	3	49	0	.	.	A	149814336	G	A	149814336	3	1	23	1	0	0	0	0	1	0	0	0	9985	1203	42	3	889	3	MTM1	23	149814336	Missense_Mutation	SNP	G	TCGA-W5-AA38-01A-11D-A417-09	48432240	149814336	5456224	135	3104											
ATAD3C	219293	broad.mit.edu	37	chr1	1389795	1389795	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gacagccgtcactggccgctAcatcgaggctcggctgggga	7	6	15	13	4	1	0	1	0	0	0	3	3	1	1	2	5	2	3	2	5	1	1	rs1610766	by2hit2allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ATAD3C	NM_001039211	exon4	c.A293T	p.Y98F	GCCGCTACATCGA	.	43	9	57	0	.	23	T	1389795	A	T	1389795	3	4	24	1	0	0	0	0	1	0	0	0	1074	391	14	5	307	5	ATAD3C	1	1389795	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09		1389795	247860826	1	3105											
ATAD3C	219293	hgsc.bcm.edu	37	chr1	1398007	1398007	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aagctggcccagtttgactaCgggaggaagtgcttagagat	11	9	14	7	1	0	2	0	1	0	1	0	5	0	4	1	3	3	3	1	3	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ATAD3C,colon,carcinoma,0,1	ATAD3C	NM_001039211	exon11	c.C1008T	p.Y336Y	TGACTACGGGAGG	.	48	2	88	0	.	0	T	1398007	C	T	1398007	2	4	24	1	0	0	0	0	0	0	0	1	1074	547	19	1		1	ATAD3C	1	1398007	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	8212	1398007	247852614	2	3106											
ATAD3B	83858	hgsc.bcm.edu	37	chr1	1417592	1417592	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaccgaggcccgggcgcgcGccaaggccgagcgggagaat	9	1	18	13	7	0	2	0	0	0	2	0	5	0	2	4	4	1	0	4	4	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ATAD3B_ENST00000378741,NS,carcinoma,0,2	ATAD3B_ENST00000378741	NM_031921	exon6	c.G589A	p.A197T	GCGCGCGCCAAGG	.	53	3	68	0	.	0	A	1417592	G	A	1417592	3	1	24	1	0	0	0	0	1	0	0	0	1073	1087	38	1	611	1	ATAD3B	1	1417592	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	19585	1417592	247833029	3	3107											
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	3807598	3807598	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggacgttcgcgtgtcTgtggctttgtgggatgagga	4	15	16	6	3	2	1	0	1	2	0	3	4	2	4	0	4	0	2	0	4	0	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_207356	exon3	c.A153C	p.T51T	CGTGTCTGTGGCT	.	42	17	73	0	.	.	G	3807598	T	G	3807598	2	3	24	1	0	0	0	0	0	0	0	1	2028	1567	55	4		4	C1orf174	1	3807598	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2390006	3807598	245443023	4	3108											
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6101927	6101927	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccaaaagacagctccagttTtacaggtaatgagtcttcat	13	11	7	10	0	2	2	1	1	1	1	3	2	3	2	2	1	2	3	2	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199860	exon3	c.T114G	p.F38L	CCAGTTTTACAGG	.	35	24	158	0	.	.	G	6101927	T	G	6101927	3	3	24	1	0	0	0	0	1	0	0	0	8054	1838	64	4	120	4	KCNAB2	1	6101927	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2294329	6101927	243148694	5	3109											
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6511978	6511978	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcggggtttcagccgctgcTcaatggaagcttggttcccg	5	11	14	11	3	2	0	2	0	0	0	3	1	3	1	2	4	4	5	2	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031475	exon10	c.T2147G	p.L716R	CGCTGCTCAATGG	.	23	18	78	0	.	.	G	6511978	T	G	6511978	3	3	24	1	0	0	0	0	1	0	0	0	5282	1551	54	4	2185	4	ESPN	1	6511978	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	410051	6511978	242738643	6	3110											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	10327609	10327609	+	Missense_Mutation	SNP	A	A	G																															acctcatggatgctgggaacAaagccaggtatggtaggaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183416	exon6	c.A601G	p.K201E	GGGAACAAAGCCA	.	19	12	63	0	.	.	G	10327609	A	G	10327609	3	3	24	1	0	0	0	0	1	0	0	0	8326	131	5	4	619	4	KIF1B	1	10327609	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3815631	10327609	238923012	7	3111	15	2									
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	10327615	10327615	+	Missense_Mutation	SNP	A	A	T																															tggatgctgggaacaaagccAggtatggtaggaaatagagt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183416	exon6	c.A607T	p.R203W	AAAGCCAGGTATG	.	20	12	54	0	.	.	T	10327615	A	T	10327615	3	4	24	1	0	0	0	0	1	0	0	0	8326	202	7	5	625	5	KIF1B	1	10327615	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6	10327615	238923006	8	3112	15	2									
FBXO6	26270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11733376	11733376	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggctgcacctaccaactcaaAgtgcagctggcctcggctga	9	7	11	14	1	1	1	1	1	0	0	2	1	1	1	3	3	5	5	3	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018438	exon5	c.A552C	p.K184N	ACTCAAAGTGCAG	.	17	11	43	0	.	.	C	11733376	A	C	11733376	3	2	24	1	0	0	0	0	1	0	0	0	5792	69	3	4	566	4	FBXO6	1	11733376	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1405761	11733376	237517245	9	3113											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15855658	15855658	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatagttctggttctgatcCtgcaaattctgtctgcgttg	6	17	10	8	1	4	2	0	2	4	0	5	2	5	2	1	1	2	4	1	1	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015291	exon2	c.C58T	p.L20L	CTGATCCTGCAAA	.	81	34	106	0	.	.	T	15855658	C	T	15855658	2	4	24	1	0	0	0	0	0	0	0	1	4662	680	24	3		3	DNAJC16	1	15855658	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4122282	15855658	233394963	10	3114											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19166611	19166611	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggacccagtagctgtaggCgcgtgggaagcggctggcca	7	5	18	11	4	0	0	0	0	0	0	0	2	0	2	2	5	2	4	2	5	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TAS1R2,caecum,carcinoma,0,1	TAS1R2	NM_152232	exon6	c.G2002A	p.A668T	TGTAGGCGCGTGG	.	42	19	35	0	.	0	T	19166611	C	T	19166611	3	4	24	1	0	0	0	0	1	0	0	0	15620	768	27	1	521	1	TAS1R2	1	19166611	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3310953	19166611	230084010	11	3115											
MRTO4	51154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	19584345	19584345	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtggttcacgaaatacacAgaaatggactacgcccgagc	14	6	11	10	3	1	1	1	0	0	1	1	4	1	2	1	3	3	1	1	3	4	3	rs140351482	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016183	exon6	c.A360G	p.T120T	ATACACAGAAATG	.	28	7	55	0	.	.	G	19584345	A	G	19584345	2	3	24	1	0	0	0	0	0	0	0	1	9901	175	7	4		4	MRTO4	1	19584345	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	417734	19584345	229666276	12	3116											
AKR7L	246181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	19597309	19597309	+	RNA	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgctgtggtcaggtgcatgtAgatagaagaggtccactcag	10	9	14	8	1	2	3	2	0	0	3	3	3	3	3	1	3	1	3	1	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCATGTAGATAGA	.	27	10	47	0	.	.	G	19597309	A	G	19597309	1	3	24	0	1	0	0	0	0	0	0	0	474	420	15	4		4	AKR7L	1	19597309	RNA	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	12964	19597309	229653312	13	3117											
PDIK1L	149420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	26448622	26448622	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagtggctgattttggtctaAgtaaagtttgttcagcctct	9	16	10	6	0	3	1	1	1	2	0	3	1	3	1	1	2	1	4	1	2	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001243532	exon3	c.A580C	p.S194R	GGTCTAAGTAAAG	.	22	14	43	0	.	.	C	26448622	A	C	26448622	3	2	24	1	0	0	0	0	1	0	0	0	11720	72	3	4	586	4	PDIK1L	1	26448622	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6851313	26448622	222801999	14	3118											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31437697	31437697	+	Missense_Mutation	SNP	A	A	C																															tgctcgatgtcctcttataaAggtcactgctgccagtcagg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014676	exon14	c.T2147G	p.L716R	TTATAAAGGTCAC	.	66	32	68	0	.	.	C	31437697	A	C	31437697	3	2	24	1	0	0	0	0	1	0	0	0	12877	72	3	4	1455	4	PUM1	1	31437697	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4989075	31437697	217812924	15	3119	16	2									
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31437700	31437700	+	Missense_Mutation	SNP	T	T	C																															tcgatgtcctcttataaaggTcactgctgccagtcagggag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014676	exon14	c.A2144G	p.D715G	TAAAGGTCACTGC	.	65	34	69	0	.	.	C	31437700	T	C	31437700	3	2	24	1	0	0	0	0	1	0	0	0	12877	1667	58	4	1458	4	PUM1	1	31437700	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3	31437700	217812921	16	3120	16	2									
TMEM39B	55116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	32560448	32560448	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctggtgtccatcagcaccTccgtgatcctcatgcagcac	7	10	9	15	1	2	1	2	1	0	0	5	1	5	1	4	1	4	4	4	1	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018056	exon7	c.T991G	p.S331A	AGCACCTCCGTGA	.	22	8	13	0	.	.	G	32560448	T	G	32560448	3	3	24	1	0	0	0	0	1	0	0	0	16222	1551	54	4	1017	4	TMEM39B	1	32560448	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1122748	32560448	216690173	17	3121											
RNF19B	127544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33409664	33409664	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caaattcaattttcactcctTttccgttggctgtgctaact	8	17	5	11	1	2	0	2	0	0	0	4	0	4	0	2	1	2	3	2	1	3	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153341	exon6	c.A1361C	p.K454T	ACTCCTTTTCCGT	.	46	22	62	0	.	.	G	33409664	T	G	33409664	3	3	24	1	0	0	0	0	1	0	0	0	13523	1841	64	4	879	4	RNF19B	1	33409664	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	849216	33409664	215840957	18	3122											
CSMD2	114784	hgsc.bcm.edu	37	chr1	34285407	34285407	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cccttgcaggtcatagccctCgttgcaggtgaactggacgc	7	9	12	13	2	1	1	1	1	0	0	2	2	1	2	2	3	4	3	2	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CSMD2_ENST00000373381,NS,malignant_melanoma,0,4	CSMD2_ENST00000373381	NM_052896	exon9	c.G1111A	p.E371K	AGCCCTCGTTGCA	.	43	2	60	0	.	0	T	34285407	C	T	34285407	3	4	24	1	0	0	0	0	1	0	0	0	3970	893	31	1	9596	1	CSMD2	1	34285407	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	875743	34285407	214965214	19	3123											
KIAA0319L	79932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36020083	36020083	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttggcttgactcccagccTcttctccatggccctccaga	6	12	7	16	0	2	2	0	1	2	1	5	2	4	2	5	2	1	1	5	2	0	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024874	exon2	c.A10G	p.R4G	CCAGCCTCTTCTC	.	47	21	76	0	.	.	C	36020083	T	C	36020083	3	2	24	1	0	0	0	0	1	0	0	0	8211	1550	54	4	3219	4	KIAA0319L	1	36020083	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1734676	36020083	213230538	20	3124											
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36565701	36565701	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggtcccacaggtcctttcTgcatgggctggatgtacttc	5	12	12	12	1	1	0	0	0	1	0	4	1	3	1	2	4	2	3	2	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005202	exon1	c.A143G	p.Q48R	CCTTTCTGCATGG	.	55	17	70	0	.	.	C	36565701	T	C	36565701	3	2	24	1	0	0	0	0	1	0	0	0	3729	1580	55	4	1976	4	COL8A2	1	36565701	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	545618	36565701	212684920	21	3125											
THRAP3	9967	broad.mit.edu;bcgsc.ca	37	chr1	36759444	36759456	+	Splice_Site	DEL	AATTTTAGGAGAA	AATTTTAGGAGAA	-																															ctatatcgttttgtattttcAattttaggagaatagacatt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	THRAP3	NM_005119	exon8	c.2031_2035del	p.677_679del	ATTTTCAATTTTA	.	39	7	101	0	.	93	-	36759456	AATTTTAGGAGAA	-	36759444	8	5	24	1	0	1	0	1	0	0	1	0	15934	145	5	0		0	THRAP3	1	36759444	Splice_Site	DEL	AATTTTAGGAGAA	TCGA-W5-AA39-01A-11D-A417-09	193743	36759444	212491177	22	3126											
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38444662	38444662	+	Silent	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaactattccttacccGccacatttcaagcctaaagc	15	9	4	13	1	1	1	1	0	0	1	2	1	2	1	4	0	4	0	4	0	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006802	exon10	c.C825G	p.G275G	TTACCCGCCACAT	.	63	28	104	0	.	.	C	38444662	G	C	38444662	2	2	24	1	0	0	0	0	0	0	0	1	14202	1074	38	5		5	SF3A3	1	38444662	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1685218	38444662	210805959	23	3127											
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39879568	39879568	+	Missense_Mutation	SNP	A	A	T																															cccctgcagctatggtggccAccctagaggaattcacttcc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015038	exon1	c.A3631T	p.T1211S	GTGGCCACCCTAG	.	42	10	45	0	.	.	T	39879568	A	T	39879568	3	4	24	1	0	0	0	0	1	0	0	0	8234	159	6	5	3633	5	KIAA0754	1	39879568	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1434906	39879568	209371053	24	3128	17	2									
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39879575	39879575	+	Missense_Mutation	SNP	A	A	T																															agctatggtggccaccctagAggaattcacttccccggcag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015038	exon1	c.A3638T	p.E1213V	CCCTAGAGGAATT	.	40	9	46	0	.	.	T	39879575	A	T	39879575	3	4	24	1	0	0	0	0	1	0	0	0	8234	304	11	5	3640	5	KIAA0754	1	39879575	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7	39879575	209371046	25	3129	17	2									
MFSD2A	84879	broad.mit.edu	37	chr1	40431616	40431616	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agacacgccttgtttccaggAcctcaatagctctacagtag	11	10	8	12	1	2	1	1	0	1	1	3	2	3	2	3	1	2	3	3	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MFSD2A	NM_001136493	exon6	c.A683G	p.D228G	TCCAGGACCTCAA	.	16	3	25	0	.	53	G	40431616	A	G	40431616	3	3	24	1	0	0	0	0	1	0	0	0	9580	275	10	4	705	4	MFSD2A	1	40431616	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	552041	40431616	208819005	26	3130											
IPO13	9670	hgsc.bcm.edu	37	chr1	44423802	44423803	+	In_Frame_Ins	INS	-	-	TGC																															aagtatgacctgcctccctaINStgctgccaacattgtggctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014652	exon8	c.1694_1695insTGC	p.Y565delinsYA	CTCCCTATGCTGC	.	30	10	27	0	.	.	TGC	44423803	-	TGC	44423802	7	5	24	1	0	1	1	0	0	0	0	0	7838	449	16	0	1724	0	IPO13	1	44423802	In_Frame_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	3992186	44423802	204826819	27	3131											
UROD	7389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45478646	45478646	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cctggggagaggaaacagacTacactcccgtttggtgcatg	10	8	13	10	1	0	2	0	0	0	2	1	4	1	3	2	4	3	2	2	4	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000374	exon2	c.T88G	p.Y30D	ACAGACTACACTC	.	26	11	72	0	.	.	G	45478646	T	G	45478646	3	3	24	1	0	0	0	0	1	0	0	0	17089	1522	53	4	94	4	UROD	1	45478646	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1054844	45478646	203771975	28	3132											
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	45984678	45984687	+	Frame_Shift_Del	DEL	GGGGCAGGGT	GGGGCAGGGT	-																															cagctgtggctttgaagttgGgggcagggtgcccaatttta																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGGCAGGGT	GGGGCAGGGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181696	exon2	c.30_39del	p.10_13del	AAGTTGGGGGCAG	.	49	10	100	0	.	.	-	45984687	GGGGCAGGGT	-	45984678	7	5	24	1	0	1	0	1	0	0	0	0	12516	1232	43	0	581	0	PRDX1	1	45984678	Frame_Shift_Del	DEL	GGGGCAGGGT	TCGA-W5-AA39-01A-11D-A417-09	506032	45984678	203265943	29	3133											
TTC39A	22996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	51754561	51754561	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcgtttctgtcttgctccatAagcagcagggccagctccag	7	11	10	13	1	2	0	0	0	2	0	5	0	4	0	3	1	4	5	3	1	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144832	exon17	c.T1572C	p.L524L	CTCCATAAGCAGC	.	21	10	54	0	.	.	G	51754561	A	G	51754561	2	3	24	1	0	0	0	0	0	0	0	1	16769	349	13	4		4	TTC39A	1	51754561	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5769883	51754561	197496060	30	3134											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52732339	52732339	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctttagctcaagcctgggAgaacatgatgagtgcctcaa	11	10	11	9	0	2	3	2	2	0	1	2	4	2	3	2	1	5	2	2	1	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004799	exon6	c.A2291G	p.E764G	CCTGGGAGAACAT	.	60	18	61	0	.	.	G	52732339	A	G	52732339	3	3	24	1	0	0	0	0	1	0	0	0	17729	304	11	4	2316	4	ZFYVE9	1	52732339	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	977778	52732339	196518282	31	3135											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52732359	52732359	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agaacatgatgagtgcctcaAgccagagccctaaccctaac	14	6	8	13	0	1	4	1	2	0	2	1	4	1	4	4	0	6	0	4	0	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004799	exon6	c.A2311C	p.S771R	GCCTCAAGCCAGA	.	57	19	69	0	.	.	C	52732359	A	C	52732359	3	2	24	1	0	0	0	0	1	0	0	0	17729	72	3	4	2336	4	ZFYVE9	1	52732359	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	20	52732359	196518262	32	3136											
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	60330334	60330334	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	taaagcagaagttggaagctCatatgtaagtaaaactgata	18	10	9	4	0	1	2	1	1	0	1	1	3	1	3	0	1	3	5	0	1	9	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015888	exon17	c.C1657T	p.H553Y	GAAGCTCATATGT	.	97	38	144	0	.	.	T	60330334	C	T	60330334	3	4	24	1	0	0	0	0	1	0	0	0	7323	826	29	3	1723	3	HOOK1	1	60330334	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7597975	60330334	188920287	33	3137											
ANKRD13C	81573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	70779446	70779446	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accccagctttgaaaatcccAgtgaagttctagataaaagt	15	10	7	9	0	1	3	0	2	1	1	2	3	2	3	3	0	1	2	3	0	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030816	exon5	c.T691A	p.W231R	AATCCCAGTGAAG	.	55	24	99	0	.	.	T	70779446	A	T	70779446	3	4	24	1	0	0	0	0	1	0	0	0	639	188	7	5	970	5	ANKRD13C	1	70779446	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	10449112	70779446	178471175	34	3138											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu	37	chr1	85666679	85666679	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcagggggcaggtcgtgcaTggcctggatcagcagataat	9	8	16	8	1	2	1	2	0	0	1	3	2	2	2	1	5	2	3	1	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032184	exon1	c.A1G	p.M1V	CGTGCATGGCCTG	.	14	6	9	0	.	.	C	85666679	T	C	85666679	3	2	24	1	0	0	0	0	1	0	0	0	15493	1464	51	4	3611	4	SYDE2	1	85666679	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	14887233	85666679	163583942	35	3139											
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	86591498	86591498	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actcaacaaacattgagacaCtttggtttctaatagtaatg	15	13	6	7	0	2	1	1	1	1	1	2	2	2	1	0	1	2	2	0	1	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152890	exon3	c.G521C	p.S174T	GAGACACTTTGGT	.	12	12	33	0	.	.	G	86591498	C	G	86591498	3	3	24	1	0	0	0	0	1	0	0	0	3706	565	20	5	4855	5	COL24A1	1	86591498	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	924819	86591498	162659123	36	3140											
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90049514	90049514	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcaacggtcttccagacaaTgtctttgagttaactgaaat	12	13	7	9	1	3	3	1	2	2	1	4	3	4	3	1	1	2	1	1	1	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015350	exon5	c.T1305C	p.N435N	AGACAATGTCTTT	.	13	11	38	0	.	.	C	90049514	T	C	90049514	2	2	24	1	0	0	0	0	0	0	0	1	9067	1461	51	4		4	LRRC8B	1	90049514	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3458016	90049514	159201107	37	3141											
BARHL2	343472	hgsc.bcm.edu	37	chr1	91182194	91182194	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	ggtcttgctgtcctcctgctCgagctttggcctgaagctct	3	14	11	13	1	2	1	0	1	2	0	5	2	4	1	3	2	4	4	3	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BARHL2,colon,carcinoma,0,1	BARHL2	NM_020063	exon1	c.G559C	p.E187Q	CCTGCTCGAGCTT	.	12	2	44	0	.	0	G	91182194	C	G	91182194	3	3	24	1	0	0	0	0	1	0	0	0	1312	893	31	5	616	5	BARHL2	1	91182194	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1132680	91182194	158068427	38	3142											
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	92573559	92573559	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aaacgttttaaagctcacagGtaaatagacacgactgattt	16	11	7	7	2	1	2	1	1	0	1	1	3	1	2	0	1	2	3	0	1	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183242	exon4	c.662+1G>T	.	TCACAGGTAAATA	.	28	20	88	0	.	.	T	92573559	G	T	92573559	5	4	24	1	0	0	0	0	0	0	1	0	1550	1275	44	3	677	3	BTBD8	1	92573559	Splice_Site	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1391365	92573559	156677062	39	3143											
CNN3	1266	bcgsc.ca	37	chr1	95368702	95368706	+	Frame_Shift_Del	DEL	GTTGA	-	-																															ggccagttcagtgaggactcGttgaccttcttcactgagcc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTTGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.218_222del	p.73_74del	GGACTCGTTGACC	.	25	0	119	0	.	23	-	95368706	-	-	95368702	7	5	24	1	0	1	0	1	0	0	0	0	3634	1136	40	0	787	0	CNN3	1	95368702	Frame_Shift_Del	DEL	GTTGA	TCGA-W5-AA39-01A-11D-A417-09	2795143	95368702	153881919	40	3144	18	2									
CNN3	1266	bcgsc.ca	37	chr1	95368708	95368712	+	Frame_Shift_Del	DEL	CTTCT	-	-																															ttcagtgaggactcgttgacCttcttcactgagcctggctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CTTCT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.212_216del	p.71_72del	GTTGACCTTCTTC	.	20	5	120	0	.	23	-	95368712	-	-	95368708	7	5	24	1	0	1	0	1	0	0	0	0	3634	680	24	0	793	0	CNN3	1	95368708	Frame_Shift_Del	DEL	CTTCT	TCGA-W5-AA39-01A-11D-A417-09	6	95368708	153881913	41	3145	18	2									
CNN3	1266	broad.mit.edu;bcgsc.ca	37	chr1	95368720	95368720	+	Frame_Shift_Del	DEL	G	G	-																															tcgttgaccttcttcactgaGcctggctgtagcttgtttat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.204delC	p.G68fs	CACTGAGCCTGGC	.	23	8	116	0	.	23	-	95368720	G	-	95368720	7	5	24	1	0	1	0	1	0	0	0	0	3634	958	34	0	805	0	CNN3	1	95368720	Frame_Shift_Del	DEL	G	TCGA-W5-AA39-01A-11D-A417-09	12	95368720	153881901	42	3146	19	2									
CNN3	1266	hgsc.bcm.edu	37	chr1	95368727	95368727	+	Missense_Mutation	SNP	T	T	C																															ccttcttcactgagcctggcTgtagcttgtttataagtctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001839	exon3	c.A197G	p.Q66R	CCTGGCTGTAGCT	.	22	10	121	0	.	.	C	95368727	T	C	95368727	3	2	24	1	0	0	0	0	1	0	0	0	3634	1580	55	4	812	4	CNN3	1	95368727	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7	95368727	153881894	43	3147	19	2									
CDC14A	8556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100983832	100983832	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcagtctgaatatgttcattActaaggccttgccactccag	10	13	7	11	0	3	1	2	1	1	0	4	1	4	1	3	1	2	1	3	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003672	exon16	c.A1781G	p.Y594C	TTCATTACTAAGG	.	33	22	72	0	.	.	G	100983832	A	G	100983832	3	3	24	1	0	0	0	0	1	0	0	0	3078	391	14	4	1975	4	CDC14A	1	100983832	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5615105	100983832	148266789	44	3148											
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	110555049	110555049	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agcccttggctggtgctaaaAtagtgggctgtacacacatc	10	10	11	10	0	0	0	0	0	0	0	1	0	0	0	1	3	3	4	1	3	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006621	exon4	c.A442C	p.I148L	GCTAAAATAGTGG	.	7	7	15	0	.	.	C	110555049	A	C	110555049	3	2	24	1	0	0	0	0	1	0	0	0	407	101	4	4	456	4	AHCYL1	1	110555049	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	9571217	110555049	138695572	45	3149											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	112999663	112999663	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccagattcactagccaacaaGggccaatcaagccagtctct	13	7	7	14	0	3	1	2	0	1	1	4	1	3	1	4	1	3	0	4	1	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018704	exon6	c.G1549T	p.G517W	CAACAAGGGCCAA	.	9	6	46	0	.	.	T	112999663	G	T	112999663	3	4	24	1	0	0	0	0	1	0	0	0	4070	1000	35	3	1563	3	CTTNBP2NL	1	112999663	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2444614	112999663	136250958	46	3150											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113140706	113140706	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctttaccagtcacccaagtgTatctttaccaaaacacaaca	15	10	3	13	0	2	0	1	0	1	0	2	0	2	0	3	0	4	1	3	0	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138729	exon5	c.A509G	p.Y170C	CAAGTGTATCTTT	.	38	28	98	0	.	.	C	113140706	T	C	113140706	3	2	24	1	0	0	0	0	1	0	0	0	15286	1638	57	4	1301	4	ST7L	1	113140706	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	141043	113140706	136109915	47	3151											
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120302536	120302536	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaatcagcatagccacagcTccggccccacctgtgggacg	9	5	10	17	2	1	0	1	0	0	0	2	1	2	1	6	2	3	2	6	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005518	exon3	c.A636T	p.G212G	CACAGCTCCGGCC	.	14	6	25	0	.	.	A	120302536	T	A	120302536	2	1	24	1	0	0	0	0	0	0	0	1	7274	1538	54	5		5	HMGCS2	1	120302536	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7161830	120302536	128948085	48	3152											
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120436670	120436670	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcctgtccagtttttgCtttagattcttcctgtccag	4	20	6	11	0	2	1	0	0	2	1	6	1	6	1	4	0	1	2	4	0	1	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021794	exon1	c.G2290T	p.A764S	TTTTTGCTTTAGA	.	103	55	165	0	.	.	A	120436670	C	A	120436670	3	1	24	1	0	0	0	0	1	0	0	0	247	797	28	3	86	3	ADAM30	1	120436670	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	134134	120436670	128813951	49	3153											
FCGR1B	2210	hgsc.bcm.edu;broad.mit.edu	37	chr1	120934442	120934442	+	Frame_Shift_Del	DEL	T	T	-																															agacctctctggcacctgtaTtcaccactgtcattgacact																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001244910	exon3	c.247delT	p.Y83fs	CCTGTATTCACCA	.	87	14	136	0	.	.	-	120934442	T	-	120934442	7	5	24	1	0	1	0	1	0	0	0	0	5813	1490	52	0	608	0	FCGR1B	1	120934442	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	497772	120934442	128316179	50	3154											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	144922029	144922029	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	agctacctgttgctgagctgGagaagtaccctctgagctct	8	11	11	11	0	2	3	0	2	2	1	2	4	2	3	2	1	6	6	2	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001002811	exon5	c.C1489G	p.P497A	GAGCTGGAGAAGT	.	65	11	75	0	.	.	C	144922029	G	C	144922029	3	2	24	1	0	0	0	0	1	0	0	0	11690	1174	41	5	6194	5	PDE4DIP	1	144922029	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	23987587	144922029	104328592	51	3155											
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145498117	145498117	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccccaggagctaatgacagtTtttcaactgctacactggaa	12	10	8	11	0	1	1	1	1	0	0	1	3	1	3	2	2	4	3	2	2	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153713	exon5	c.T708G	p.V236V	GACAGTTTTTCAA	.	82	12	80	0	.	.	G	145498117	T	G	145498117	2	3	24	1	0	0	0	0	0	0	0	1	8873	1828	64	4		4	LIX1L	1	145498117	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	576088	145498117	103752504	52	3156											
PRKAB2	5565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	146639504	146639504	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	catgatacaaactctttgtcCccagggagctgtaagaagga	13	9	10	9	0	1	2	0	1	1	1	2	4	2	4	2	2	3	2	2	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005399	exon3	c.G165C	p.G55G	TTTGTCCCCAGGG	.	46	25	35	0	.	.	G	146639504	C	G	146639504	2	3	24	1	0	0	0	0	0	0	0	1	12548	610	22	5		5	PRKAB2	1	146639504	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1141387	146639504	102611117	53	3157											
ANXA9	8416	hgsc.bcm.edu	37	chr1	150956496	150956496	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctgaccaaccggagcaGagagcaaaggcagctcatct	12	5	12	12	2	2	2	1	1	1	1	2	4	2	3	2	2	5	5	2	2	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ANXA9,NS,carcinoma,0,1	ANXA9	NM_003568	exon5	c.G218T	p.R73I	GGAGCAGAGAGCA	.	36	2	36	0	.	0	T	150956496	G	T	150956496	3	4	24	1	0	0	0	0	1	0	0	0	721	942	33	3	228	3	ANXA9	1	150956496	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4316992	150956496	98294125	54	3158											
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151687099	151687099	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtcttctgttcgtgcagggCgctctgggccttcagggctg	2	12	15	12	3	4	0	1	0	3	0	5	0	4	0	1	3	1	4	1	3	0	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007185	exon2	c.G199A	p.A67T	GCAGGGCGCTCTG	.	60	47	52	0	.	.	T	151687099	C	T	151687099	3	4	24	1	0	0	0	0	1	0	0	0	3239	768	27	1	1242	1	CELF3	1	151687099	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	730603	151687099	97563522	55	3159											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152129066	152129066	+	Missense_Mutation	SNP	T	T	C																															cttgtctctcaggctgactgTggtgggaatctctgtcttgt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,15	.	NM_001122965	exon3	c.A509G	p.H170R	TGACTGTGGTGGG	.	70	10	94	0	.	123	C	152129066	T	C	152129066	3	2	24	1	0	0	0	0	1	0	0	0	13716	1696	59	4	1849	4	RPTN	1	152129066	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	441967	152129066	97121555	56	3160	20	2									
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152129068	152129068	+	Missense_Mutation	SNP	G	G	T																															tgtctctcaggctgactgtgGtgggaatctctgtcttgttt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001122965	exon3	c.C507A	p.H169Q	ACTGTGGTGGGAA	.	68	9	91	0	.	.	T	152129068	G	T	152129068	3	4	24	1	0	0	0	0	1	0	0	0	13716	1252	44	3	1851	3	RPTN	1	152129068	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2	152129068	97121553	57	3161	20	2									
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155447890	155447890	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggctcagagttgggagtgaAtcctccaagggataagcttg	10	10	14	7	0	1	2	1	1	0	1	3	4	3	4	2	3	1	3	2	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018489	exon3	c.T4771G	p.F1591V	GAGTGAATCCTCC	.	71	12	77	0	.	.	C	155447890	A	C	155447890	3	2	24	1	0	0	0	0	1	0	0	0	1040	101	4	4	4227	4	ASH1L	1	155447890	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3318822	155447890	93802731	58	3162											
RIT1	6016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155880452	155880452	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaaaatgttacctaccactcTtccctacaccaccagcaccc	12	8	3	18	0	1	0	0	0	1	0	2	1	2	0	6	0	4	2	6	0	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	RIT1,NS,malignant_melanoma,0,1	RIT1	NM_001256821	exon2	c.A152T	p.K51M	CCACTCTTCCCTA	.	58	36	58	0	.	0	A	155880452	T	A	155880452	3	1	24	1	0	0	0	0	1	0	0	0	13438	1609	56	5	578	5	RIT1	1	155880452	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	432562	155880452	93370169	59	3163											
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156450644	156450644	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	accccatagcgccggaagagCccgtcgagctcctcgctggc	7	5	12	17	5	0	1	0	0	0	1	3	3	1	2	5	2	3	2	5	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005920	exon4	c.G378A	p.G126G	GAAGAGCCCGTCG	.	55	35	44	0	.	.	T	156450644	C	T	156450644	2	4	24	1	0	0	0	0	0	0	0	1	9508	726	26	3		3	MEF2D	1	156450644	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	570192	156450644	92799977	60	3164											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156622046	156622046	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctttgcctagaatttgAaacacaatccatggtaccgc	11	12	8	10	1	0	2	0	1	0	1	1	2	1	2	3	1	4	2	3	1	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198427	exon8	c.A1304G	p.E435G	AATTTGAAACACA	.	62	16	90	0	.	.	G	156622046	A	G	156622046	3	3	24	1	0	0	0	0	1	0	0	0	1343	246	9	4	1330	4	BCAN	1	156622046	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	171402	156622046	92628575	61	3165											
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160263008	160263008	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatcaactggaagctgaGagttattacaccagatctaa	14	11	9	7	0	2	3	1	2	1	2	2	5	2	4	1	1	3	2	1	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098398	exon27	c.C2798A	p.S933Y	AGCTGAGAGTTAT	.	103	66	89	0	.	.	T	160263008	G	T	160263008	3	4	24	1	0	0	0	0	1	0	0	0	3750	942	33	3	931	3	COPA	1	160263008	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3640962	160263008	88987613	62	3166											
COPA	1314	hgsc.bcm.edu;ucsc.edu	37	chr1	160269048	160269048	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagagttcgaatgatcccGtggtccctaagaacagaggg	11	8	12	10	2	0	4	0	1	0	3	4	5	3	4	3	2	1	1	3	2	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098398	exon18	c.C1701T	p.H567H	GATCCCGTGGTCC	.	40	4	22	0	.	.	A	160269048	G	A	160269048	2	1	24	1	0	0	0	0	0	0	0	1	3750	1136	40	1		1	COPA	1	160269048	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6040	160269048	88981573	63	3167											
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	162467956	162467956	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccccggcgccctcaagcagTtcttgccgccaggaaccacc	7	5	9	20	3	2	0	1	0	1	0	2	1	2	1	7	2	3	2	7	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175866	exon1	c.T166G	p.F56V	AAGCAGTTCTTGC	.	29	19	24	0	.	.	G	162467956	T	G	162467956	3	3	24	1	0	0	0	0	1	0	0	0	17026	1725	60	4	218	4	UHMK1	1	162467956	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2198908	162467956	86782665	64	3168											
TMCO1	54499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	165728808	165728808	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgactctgttattgtttcCttcttcttttccactgtaaa	6	20	5	10	0	3	1	0	1	3	0	5	1	5	1	2	0	0	4	2	0	3	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019026	exon3	c.G315A	p.K105K	TGTTTCCTTCTTC	.	93	60	79	0	.	.	T	165728808	C	T	165728808	2	4	24	1	0	0	0	0	0	0	0	1	16055	680	24	3		3	TMCO1	1	165728808	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3260852	165728808	83521813	65	3169											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176811561	176811561	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acctggatgagtgcacctgcCgggaccccaaggcagaagaa	12	4	13	12	1	0	3	0	1	0	2	0	5	0	5	5	3	2	2	5	3	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PAPPA2,colon,carcinoma,-1,2	PAPPA2	NM_020318	exon23	c.C5347G	p.R1783G	ACCTGCCGGGACC	.	61	16	43	0	.	-1	G	176811561	C	G	176811561	3	3	24	1	0	0	0	0	1	0	0	0	11480	643	23	5	5486	5	PAPPA2	1	176811561	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	11082753	176811561	72439060	66	3170											
RALGPS2	55103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	178745908	178745908	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gatgaggaaagcatggacctAatgaacgggcaggcaagcag	15	4	15	7	1	0	2	0	2	0	0	0	5	0	4	1	4	3	4	1	4	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152663	exon2	c.A9C	p.L3L	GGACCTAATGAAC	.	53	34	53	0	.	.	C	178745908	A	C	178745908	2	2	24	1	0	0	0	0	0	0	0	1	13070	349	13	4		4	RALGPS2	1	178745908	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1934347	178745908	70504713	67	3171											
SOAT1	6646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	179312001	179312001	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttttccttttctaggcacTgttccaatacctacagtcaa	10	15	5	11	0	2	0	1	0	1	0	4	0	4	0	3	1	2	3	3	1	5	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003101	exon9	c.T864C	p.T288T	AGGCACTGTTCCA	.	73	54	66	0	.	.	C	179312001	T	C	179312001	2	2	24	1	0	0	0	0	0	0	0	1	14964	1567	55	4		4	SOAT1	1	179312001	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	566093	179312001	69938620	68	3172											
CEP350	9857	hgsc.bcm.edu	37	chr1	180023000	180023000	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctcaccagtcttcactccTgcgtctccgtgaaaaggcct	8	10	8	15	2	4	1	2	1	2	0	6	1	5	1	4	1	2	1	4	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014810	exon24	c.T5105C	p.L1702P	CACTCCTGCGTCT	.	98	4	79	0	.	.	C	180023000	T	C	180023000	3	2	24	1	0	0	0	0	1	0	0	0	3276	1580	55	4	5195	4	CEP350	1	180023000	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	710999	180023000	69227621	69	3173											
PRG4	10216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186277684	186277684	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caaaagagacagcaactacaAcagaaaaaactaccgaatcc	22	3	5	11	1	0	2	0	0	0	2	1	4	1	2	2	0	6	1	2	0	10	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005807	exon7	c.A2833G	p.T945A	ACTACAACAGAAA	.	94	54	76	0	.	.	G	186277684	A	G	186277684	3	3	24	1	0	0	0	0	1	0	0	0	12533	43	2	4	2855	4	PRG4	1	186277684	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6254684	186277684	62972937	70	3174											
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200376559	200376559	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagctcctgggaaggtgtcaActgctgatgtgtagcatcca	9	10	12	10	0	1	1	1	1	0	0	3	2	3	2	2	2	4	4	2	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012482	exon2	c.T2275G	p.L759V	GTGTCAACTGCTG	.	74	19	63	0	.	.	C	200376559	A	C	200376559	3	2	24	1	0	0	0	0	1	0	0	0	17876	40	2	4	416	4	ZNF281	1	200376559	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	14098875	200376559	48874062	71	3175											
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200587439	200587439	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtgtcattttgacagaatctAtttcagctgttttccacttt	8	19	6	8	0	3	2	2	1	1	1	4	2	4	2	1	0	1	2	1	0	2	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014875	exon2	c.T413G	p.I138R	GAATCTATTTCAG	.	67	43	72	0	.	.	C	200587439	A	C	200587439	3	2	24	1	0	0	0	0	1	0	0	0	8318	449	16	4	4649	4	KIF14	1	200587439	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	210880	200587439	48663182	72	3176											
ARL8A	127829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202107156	202107156	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggaaacgcggctgtcccccaAtgtcccagagctgagcaaga	11	5	12	13	2	0	3	0	1	0	2	2	4	2	4	3	2	3	3	3	2	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138795	exon3	c.T215C	p.I72T	CCCCCAATGTCCC	.	38	27	31	0	.	.	G	202107156	A	G	202107156	3	3	24	1	0	0	0	0	1	0	0	0	945	101	4	4	365	4	ARL8A	1	202107156	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1519717	202107156	47143465	73	3177											
PLEKHA6	22874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204236606	204236606	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccaagggccaagctcaccttTatagtagaagaggcagcgat	13	7	11	10	1	1	2	1	0	0	2	1	3	1	2	3	2	2	3	3	2	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PLEKHA6	NM_014935	exon5	c.A277G	p.K93E	CACCTTTATAGTA	.	31	18	38	0	.	115	C	204236606	T	C	204236606	3	2	24	1	0	0	0	0	1	0	0	0	12108	1763	61	4	2941	4	PLEKHA6	1	204236606	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2129450	204236606	45014015	74	3178											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205027329	205027329	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagatgaatggtaccgAgatgaagctggagccaggtt	12	8	16	5	1	0	4	0	2	0	2	0	7	0	6	2	4	3	3	2	4	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005076	exon4	c.A236T	p.E79V	GTACCGAGATGAA	.	33	21	31	0	.	.	T	205027329	A	T	205027329	3	4	24	1	0	0	0	0	1	0	0	0	3664	304	11	5	246	5	CNTN2	1	205027329	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	790723	205027329	44223292	75	3179											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208200667	208200667	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccgtgcctgctcatcctgcTctagggccccgatgagctga	5	9	12	15	2	2	2	1	2	1	0	3	3	3	2	5	1	4	3	5	1	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025179	exon32	c.A5606T	p.E1869V	TCCTGCTCTAGGG	.	22	14	20	0	.	.	A	208200667	T	A	208200667	3	1	24	1	0	0	0	0	1	0	0	0	12168	1551	54	5	82	5	PLXNA2	1	208200667	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3173338	208200667	41049954	76	3180											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209801446	209801446	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cttgcataggtcacagcgctCtccctgcacatgctccttgc	6	11	8	16	1	2	0	1	0	1	0	4	0	3	0	2	1	5	4	2	1	1	3	rs145170416		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000228	exon11	c.G1222C	p.E408Q	AGCGCTCTCCCTG	.	58	44	58	0	0.000	.	G	209801446	C	G	209801446	3	3	24	1	0	0	0	0	1	0	0	0	8651	922	32	5	2348	5	LAMB3	1	209801446	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1600779	209801446	39449175	77	3181											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209969704	209969704	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggcctcacctgggttaatgAtcgagccctggggctgaggg	6	8	17	10	1	1	2	1	2	0	0	2	3	1	2	3	5	1	2	3	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006147	exon4	c.T368G	p.I123S	TTAATGATCGAGC	.	28	6	36	0	.	.	C	209969704	A	C	209969704	3	2	24	1	0	0	0	0	1	0	0	0	7878	333	12	4	1059	4	IRF6	1	209969704	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	168258	209969704	39280917	78	3182											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209974658	209974658	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tccagggaatctggaagcgtTtagagtccctgtgtagccag	9	10	13	9	1	1	1	0	0	1	1	3	3	3	3	3	2	2	2	3	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006147	exon3	c.A101C	p.K34T	AAGCGTTTAGAGT	.	183	27	147	0	.	.	G	209974658	T	G	209974658	3	3	24	1	0	0	0	0	1	0	0	0	7878	1841	64	4	1330	4	IRF6	1	209974658	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4954	209974658	39275963	79	3183											
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	212118230	212118230	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	agatccgtgctgaaccactcCctctacctttagcgccagct	8	10	7	16	2	1	2	0	1	1	1	3	2	3	2	5	0	5	2	5	0	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015434	exon19	c.G2497A	p.G833R	CCACTCCCTCTAC	.	46	28	64	0	.	.	T	212118230	C	T	212118230	3	4	24	1	0	0	0	0	1	0	0	0	7827	632	22	3	399	3	INTS7	1	212118230	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2143572	212118230	37132391	80	3184											
SMYD2	56950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214503534	214503534	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tttaccagctatattgatctCctgtacccaacggaagatag	12	12	7	10	1	1	2	0	1	1	1	2	3	1	3	3	1	4	2	3	1	7	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020197	exon8	c.C729A	p.L243L	TGATCTCCTGTAC	.	157	34	100	0	.	.	A	214503534	C	A	214503534	2	1	24	1	0	0	0	0	0	0	0	1	14876	842	30	3		3	SMYD2	1	214503534	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2385304	214503534	34747087	81	3185											
GPATCH2	55105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	217783668	217783668	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagtatgcctaccattgAagttggagtccctccagatt	13	11	8	9	0	0	2	0	1	0	1	2	3	2	3	4	1	2	2	4	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GPATCH2	NM_018040	exon5	c.T1093G	p.S365A	CCATTGAAGTTGG	.	140	31	119	1	.	53	C	217783668	A	C	217783668	3	2	24	1	0	0	0	0	1	0	0	0	6631	246	9	4	517	4	GPATCH2	1	217783668	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3280134	217783668	31466953	82	3186											
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	224345385	224345385	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggagtctcctcggaaacgAaaaaaggccacggaagccat	15	4	12	10	3	1	0	0	0	1	0	3	5	1	3	3	4	2	0	3	4	5	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015176	exon5	c.A1044G	p.R348R	GAAACGAAAAAAG	.	60	42	63	0	.	.	G	224345385	A	G	224345385	2	3	24	1	0	0	0	0	0	0	0	1	5771	233	9	4		4	FBXO28	1	224345385	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6561717	224345385	24905236	83	3187											
NVL	4931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	224477340	224477340	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctctcggcacagtgccatgAgatcagcaccaacaaagcct	12	6	8	15	1	2	1	1	1	1	1	3	2	2	1	4	1	4	2	4	1	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002533	exon13	c.T1421C	p.L474P	GCCATGAGATCAG	.	67	17	66	0	.	.	G	224477340	A	G	224477340	3	3	24	1	0	0	0	0	1	0	0	0	10828	304	11	4	1193	4	NVL	1	224477340	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	131955	224477340	24773281	84	3188											
WNT3A	89780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	228194881	228194881	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcagcctgaagcaggctctgGgcagctacccgatctggtgg	7	7	15	12	1	2	1	0	1	2	0	2	2	2	1	2	4	4	5	2	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033131	exon1	c.G52C	p.G18R	GCTCTGGGCAGCT	.	54	33	41	0	.	.	C	228194881	G	C	228194881	3	2	24	1	0	0	0	0	1	0	0	0	17449	1232	43	5	54	5	WNT3A	1	228194881	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3717541	228194881	21055740	85	3189											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228646009	228646009	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcatctcgtccaaggccaTgggcatcatgaactccttcg	8	9	10	14	3	2	1	1	1	1	0	6	1	4	1	3	3	1	2	3	3	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HIST3H2BB	NM_175055	exon1	c.T179G	p.M60R	AGGCCATGGGCAT	.	196	4	134	0	.	23	G	228646009	T	G	228646009	3	3	24	1	0	0	0	0	1	0	0	0	7224	1464	51	4	181	4	HIST3H2BB	1	228646009	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	451128	228646009	20604612	86	3190											
KIAA1804	0	broad.mit.edu	37	chr1	233464401	233464409	+	In_Frame_Del	DEL	CCGAGCGCT	CCGAGCGCT	-																															gcccgcggcggagcgctcaaCcgagcgctggccgctgccaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KIAA1804	NM_032435	exon1	c.627_635del	p.209_212del	GCTCAACCGAGCG	.	8	4	8	0	.	129	-	233464409	CCGAGCGCT	-	233464401	7	5	24	1	0	1	0	1	0	0	0	0	8301	506	18	0	629	0	KIAA1804	1	233464401	In_Frame_Del	DEL	CCGAGCGCT	TCGA-W5-AA39-01A-11D-A417-09	4818392	233464401	15786220	87	3191											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236175334	236175334	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacatcggcttggctggcatTcatctacatctgtaaaacag	11	11	9	10	1	3	0	1	0	2	0	4	1	3	0	0	3	2	4	0	3	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002508	exon12	c.A2414T	p.E805V	TGGCATTCATCTA	.	34	18	21	0	.	.	A	236175334	T	A	236175334	3	1	24	1	0	0	0	0	1	0	0	0	10461	1783	62	5	1365	5	NID1	1	236175334	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2710933	236175334	13075287	88	3192											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236175345	236175345	+	Splice_Site	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctggcattcatctacatcTgtaaaacagccaccaggccc	11	8	8	14	0	3	0	1	0	2	0	3	0	3	0	3	3	3	3	3	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002508	exon13	c.2405-2A>G	.	TACATCTGTAAAA	.	31	16	21	0	.	.	C	236175345	T	C	236175345	5	2	24	1	0	0	0	0	0	0	1	0	10461	1594	55	4	1376	4	NID1	1	236175345	Splice_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	11	236175345	13075276	89	3193											
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	243663078	243663078	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttacccagcatgccacaatcTgattgctgacctggatggaa	11	10	9	11	0	1	2	0	2	1	0	1	4	1	4	3	2	4	2	3	2	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006642	exon18	c.T2133A	p.S711S	ACAATCTGATTGC	.	64	28	56	0	.	.	A	243663078	T	A	243663078	2	1	24	1	0	0	0	0	0	0	0	1	14013	1567	55	5		5	SDCCAG8	1	243663078	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7487733	243663078	5587543	90	3194											
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	245019773	245019773	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcctttcattttgaggAccgcatgttctggtaggtct	6	15	10	10	1	3	1	1	1	2	0	3	2	3	2	3	3	1	3	3	3	1	5	rs111577008	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031844	exon10	c.T1898A	p.V633D	TTGAGGACCGCAT	.	107	49	56	0	.	.	T	245019773	A	T	245019773	3	4	24	1	0	0	0	0	1	0	0	0	7314	275	10	5	599	5	HNRNPU	1	245019773	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1356695	245019773	4230848	91	3195											
OR2L2	26246	hgsc.bcm.edu	37	chr1	248202347	248202347	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctttgcttatacctatgtaCgtccaagatccctgcgatct	8	14	6	13	2	1	1	0	0	1	1	3	2	3	1	4	0	4	2	4	0	5	5	rs143360089	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	OR2L2,right_upper_lobe,carcinoma,0,2	OR2L2	NM_001004686	exon1	c.C778T	p.R260C	TATGTACGTCCAA	.	71	3	76	0	0.000	0	T	248202347	C	T	248202347	3	4	24	1	0	0	0	0	1	0	0	0	11055	536	19	1	780	1	OR2L2	1	248202347	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3182574	248202347	1048274	92	3196											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	249211007	249211007	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcacctacctggcagtgtgcTgcatgcttcagtcctgtgtg	5	13	11	12	0	2	0	2	0	0	0	3	0	3	0	3	1	4	4	3	1	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170725	exon3	c.T224C	p.L75P	GTGTGCTGCATGC	.	38	22	26	0	.	.	C	249211007	T	C	249211007	3	2	24	1	0	0	0	0	1	0	0	0	11829	1580	55	4	230	4	PGBD2	1	249211007	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1008660	249211007	39614	93	3197											
KCNF1	3754	broad.mit.edu;bcgsc.ca	37	chr2	11053983	11053983	+	Frame_Shift_Del	DEL	C	C	-																															tcccacagcgacaccttcatCcccctcctgaccgaggagaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KCNF1	NM_002236	exon1	c.1431delC	p.I477fs	CTTCATCCCCCTC	.	32	8	50	0	.	70	-	11053983	C	-	11053983	7	5	24	1	0	1	0	1	0	0	0	0	8070	845	30	0	1433	0	KCNF1	2	11053983	Frame_Shift_Del	DEL	C	TCGA-W5-AA39-01A-11D-A417-09		11053983	232145390	94	3198											
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	20482963	20482963	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtgctgcctgtaaggctacTtgcagttcctccagctgctg	5	13	11	12	0	0	0	0	0	0	0	2	0	2	0	3	1	6	7	3	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015317	exon11	c.A1465C	p.S489R	GGCTACTTGCAGT	.	38	13	86	0	.	.	G	20482963	T	G	20482963	3	3	24	1	0	0	0	0	1	0	0	0	12878	1609	56	4	1769	4	PUM2	2	20482963	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9428980	20482963	222716410	95	3199											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21235170	21235170	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccttggaggtaggaggAgttaaacctcaggttggact	9	10	16	6	0	1	0	1	0	0	0	1	4	1	4	2	7	2	3	2	7	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000384	exon26	c.T4570C	p.S1524P	AGGAGGAGTTAAA	.	39	18	63	0	.	.	G	21235170	A	G	21235170	3	3	24	1	0	0	0	0	1	0	0	0	782	304	11	4	9137	4	APOB	2	21235170	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	752207	21235170	221964203	96	3200											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24103602	24103602	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttctgcctcttcaacttctaTatctccatcctcctcttgag	6	17	3	15	0	6	1	1	1	5	0	9	1	8	1	4	0	2	0	4	0	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242338	exon7	c.A808G	p.I270V	CTTCTATATCTCC	.	42	16	67	0	.	.	C	24103602	T	C	24103602	3	2	24	1	0	0	0	0	1	0	0	0	1071	1406	49	4	3656	4	ATAD2B	2	24103602	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2868432	24103602	219095771	97	3201											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	24118774	24118774	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaaacagaatcaggttGtttcaaagtgcgtttggctg	10	14	11	6	1	2	1	2	0	0	1	2	1	2	1	0	2	3	5	0	2	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242338	exon2	c.C283T	p.Q95X	CAGGTTGTTTCAA	.	38	15	54	0	.	.	A	24118774	G	A	24118774	4	1	24	1	0	0	0	0	0	1	0	0	1071	1386	48	3	4201	3	ATAD2B	2	24118774	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	15172	24118774	219080599	98	3202											
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25043665	25043665	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtattgccccagatgtcgtaGtgtggtttccgggctccgat	5	13	13	10	3	0	1	0	0	0	1	3	2	2	1	4	2	1	4	4	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004036	exon20	c.C3180T	p.H1060H	GTCGTAGTGTGGT	.	54	21	83	0	.	.	A	25043665	G	A	25043665	2	1	24	1	0	0	0	0	0	0	0	1	294	1020	36	3		3	ADCY3	2	25043665	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	924891	25043665	218155708	99	3203											
ZNF513	130557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27601102	27601102	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	cagccccggcaggtccaaggGaatagcagctctggcagtgg	9	5	15	12	1	1	0	0	0	1	0	2	1	2	1	3	5	3	4	3	5	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144631	exon4	c.C936T	p.F312F	CCAAGGGAATAGC	.	21	14	51	0	.	.	A	27601102	G	A	27601102	2	1	24	1	0	0	0	0	0	0	0	1	18015	1165	41	3		3	ZNF513	2	27601102	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2557437	27601102	215598271	100	3204											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29295281	29295281	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgactgaggtccctcTggacccttcgcagctcctga	5	11	10	15	1	2	3	0	3	2	0	5	4	4	4	3	2	1	3	3	2	0	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001029883	exon1	c.A1847T	p.Q616L	TCCCTCTGGACCC	.	14	7	18	0	.	.	A	29295281	T	A	29295281	3	1	24	1	0	0	0	0	1	0	0	0	2205	1580	55	5	2027	5	C2orf71	2	29295281	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1694179	29295281	213904092	101	3205											
SRD5A2	6716	broad.mit.edu	37	chr2	31751121	31751121	+	RNA	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actctaagcagacaccactcAgaatccccaggccagctggc	12	5	8	16	0	2	2	1	0	1	2	3	2	3	2	4	2	2	2	4	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCACTCAGAATCC	.	29	8	34	0	.	.	G	31751121	A	G	31751121	1	3	24	0	1	0	0	0	0	0	0	0	15195	203	7	4		4	SRD5A2	2	31751121	RNA	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2455840	31751121	211448252	102	3206											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32667184	32667184	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaatttcatgagaagcttgtTaatactctttgcagaaaaac	15	13	7	6	0	2	2	1	1	1	2	2	4	2	2	0	0	4	3	0	0	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016252	exon18	c.T3996C	p.V1332V	GCTTGTTAATACT	.	47	20	81	0	.	.	C	32667184	T	C	32667184	2	2	24	1	0	0	0	0	0	0	0	1	1437	1741	61	4		4	BIRC6	2	32667184	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	916063	32667184	210532189	103	3207											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32678936	32678936	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttcacatctctcactggacTtttggaagttgaacctctgc	8	15	7	11	0	4	1	2	1	2	0	5	3	4	3	1	2	2	1	1	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BIRC6_ENST00000421745,NS,carcinoma,0,2	BIRC6_ENST00000421745	NM_016252	exon23	c.T4679G	p.L1560R	CTGGACTTTTGGA	.	63	25	115	0	.	0	G	32678936	T	G	32678936	3	3	24	1	0	0	0	0	1	0	0	0	1437	1609	56	4	4769	4	BIRC6	2	32678936	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	11752	32678936	210520437	104	3208											
STRN	6801	broad.mit.edu;bcgsc.ca	37	chr2	37084999	37084999	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	taattttttaaagtatgtacCtttagtatcattaaatacac	15	18	3	5	0	1	0	1	0	0	0	1	0	1	0	1	0	2	3	1	0	10	11	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STRN	NM_003162	exon14	c.G1837C	p.E613Q	ATGTACCTTTAGT	.	14	7	50	0	.	71	G	37084999	C	G	37084999	5	3	24	1	0	0	0	0	0	0	1	0	15385	695	24	5	525	5	STRN	2	37084999	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4406063	37084999	206114374	105	3209											
SPTBN1	0	broad.mit.edu;bcgsc.ca	37	chr2	54857084	54857084	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcccgggttgcagtggtgAaccagattgcacgccagctg	7	9	13	12	2	0	2	0	1	0	1	1	2	1	2	3	2	4	4	3	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPTBN1	NM_003128	exon15	c.A2725G	p.N909D	GTGGTGAACCAGA	.	6	3	20	0	.	378	G	54857084	A	G	54857084	3	3	24	1	0	0	0	0	1	0	0	0	15175	246	9	4	2892	4	SPTBN1	2	54857084	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	17772085	54857084	188342289	106	3210											
REL	5966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61149151	61149151	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	caaggtatcccaccattcctGagaatacctgttgggaatga	12	10	9	10	0	0	2	0	2	0	1	2	4	2	3	4	2	1	2	4	2	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002908	exon11	c.G1341C	p.L447L	ATTCCTGAGAATA	.	35	17	53	0	.	.	C	61149151	G	C	61149151	2	2	24	1	0	0	0	0	0	0	0	1	13267	1277	45	5		5	REL	2	61149151	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6292067	61149151	182050222	107	3211											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61523963	61523963	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgagatattctggaatgccAtcaacatattaggacatgta	14	12	8	7	0	2	1	1	1	1	1	2	4	2	3	1	2	2	1	1	2	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014709	exon30	c.T4226G	p.M1409R	AATGCCATCAACA	.	41	15	73	0	.	.	C	61523963	A	C	61523963	3	2	24	1	0	0	0	0	1	0	0	0	17125	217	8	4	6618	4	USP34	2	61523963	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	374812	61523963	181675410	108	3212											
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62100224	62100224	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaaattggtcaatatgAgcaactggcttggttccaat	12	12	10	7	0	1	1	1	1	0	0	2	1	2	1	1	3	2	5	1	3	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006430	exon10	c.T1038A	p.A346A	AATATGAGCAACT	.	56	24	111	0	.	.	T	62100224	A	T	62100224	2	4	24	1	0	0	0	0	0	0	0	1	2977	291	11	5		5	CCT4	2	62100224	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	576261	62100224	181099149	109	3213											
CEP68	23177	bcgsc.ca	37	chr2	65299502	65299502	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctgaggggtgcgaaggaccgGctgactataggcaagcacct	10	6	15	10	2	0	2	0	2	0	0	0	4	0	3	2	5	2	3	2	5	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CEP68	NM_015147	exon3	c.G1272A	p.R424R	GGACCGGCTGACT	.	14	3	21	0	.	69	A	65299502	A	A	65299502	2	1	24	1	0	0	0	0	0	0	0	1	3280	1190	42	3		3	CEP68	2	65299502	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3199278	65299502	177899871	110	3214											
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70188309	70188309	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cagccccagggaccccaaagGccttcaggagggcctctttc	8	6	11	16	0	2	0	1	0	1	0	3	2	2	2	6	4	1	0	6	4	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152792	exon1	c.C512T	p.A171V	CCAAAGGCCTTCA	.	22	10	35	0	.	.	A	70188309	G	A	70188309	3	1	24	1	0	0	0	0	1	0	0	0	1057	1203	42	3	523	3	ASPRV1	2	70188309	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4888807	70188309	173011064	111	3215											
MCEE	84693	hgsc.bcm.edu;broad.mit.edu	37	chr2	71351654	71351654	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cttactgttggaatgggagcTtgaagtctggaaaaaagccc	12	10	12	7	0	1	1	0	1	1	0	1	4	1	4	1	3	3	2	1	3	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032601	exon2	c.A60C	p.Q20H	GGGAGCTTGAAGT	.	7	4	14	0	.	.	G	71351654	T	G	71351654	3	3	24	1	0	0	0	0	1	0	0	0	9427	1606	56	4	478	4	MCEE	2	71351654	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1163345	71351654	171847719	112	3216											
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73518868	73518868	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggcgattgagctcgtcggagCgcgcaaagctccgcacacaa	10	5	13	13	6	0	1	0	1	0	0	3	3	1	2	1	2	3	4	1	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001965	exon2	c.G1487A	p.R496H	TCGGAGCGCGCAA	.	12	6	22	0	.	.	T	73518868	C	T	73518868	3	4	24	1	0	0	0	0	1	0	0	0	5000	768	27	1	286	1	EGR4	2	73518868	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2167214	73518868	169680505	113	3217											
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	75100419	75100419	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccagagtttcctggtctcatGgaccaagggattcaagtcca	10	10	10	11	0	2	1	2	0	1	1	5	3	4	3	4	3	0	1	4	3	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000189	exon5	c.G512T	p.W171L	TCTCATGGACCAA	.	35	19	37	0	.	.	T	75100419	G	T	75100419	3	4	24	1	0	0	0	0	1	0	0	0	7232	1357	47	3	530	3	HK2	2	75100419	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1581551	75100419	168098954	114	3218											
VAMP5	10791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85820227	85820227	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccctcagagcagtgacagcAgtagtgccccacggacccag	10	5	11	15	1	1	2	1	1	0	1	2	3	2	3	4	1	3	3	4	1	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006634	exon3	c.A298T	p.S100C	GACAGCAGTAGTG	.	19	7	36	0	.	.	T	85820227	A	T	85820227	3	4	24	1	0	0	0	0	1	0	0	0	17176	188	7	5	308	5	VAMP5	2	85820227	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	10719808	85820227	157379146	115	3219											
MRPL35	51318	hgsc.bcm.edu	37	chr2	86437740	86437740	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggaagaggcgaaactggtaCgttgatgatccttatcagaa	13	10	12	6	2	1	4	1	2	0	2	2	6	2	5	1	3	2	2	1	3	5	3	rs1052060		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MRPL35,NS,carcinoma,0,1	MRPL35	NM_016622	exon4	c.C516T	p.Y172Y	CTGGTACGTTGAT	.	42	2	69	0	.	0	T	86437740	C	T	86437740	2	4	24	1	0	0	0	0	0	0	0	1	9847	547	19	1		1	MRPL35	2	86437740	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	617513	86437740	156761633	116	3220											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86697428	86697428	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	attcttgtgtgaacatcgtgGcacagttgcctaaatgccga	10	12	10	9	2	1	1	0	1	1	0	2	2	1	1	2	1	3	2	2	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146688	exon11	c.G1621A	p.A541T	ATCGTGGCACAGT	.	53	19	86	0	.	.	A	86697428	G	A	86697428	3	1	24	1	0	0	0	0	1	0	0	0	8170	1203	42	3	1659	3	KDM3A	2	86697428	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	259688	86697428	156501945	117	3221											
LIMS1	0	broad.mit.edu	37	chr2	109150329	109150329	+	RNA	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgcggagctcaggcacccAgcggtgaccgatccagacca	10	4	12	15	3	1	2	1	1	0	1	2	4	2	3	4	3	3	2	4	3	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	LIMS1	.	.	.	.	GCACCCAGCGGTG	.	11	4	8	0	.	38	G	109150329	A	G	109150329	1	3	24	0	1	0	0	0	0	0	0	0	8843	203	7	4		4	LIMS1	2	109150329	RNA	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	22452901	109150329	134049044	118	3222											
MERTK	10461	broad.mit.edu	37	chr2	112656268	112656268	+	Translation_Start_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggacaggttcgggacgtccaTctgtccatccgtccggagag	7	8	14	12	4	1	1	0	0	1	1	6	4	5	3	4	4	0	1	4	4	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MERTK	.	.	.	.	CGTCCATCTGTCC	.	5	2	9	0	.	112	G	112656268	T	G	112656268	1	3	24	1	0	0	0	0	0	0	0	0	9529	1450	50	4		4	MERTK	2	112656268	Translation_Start_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3505939	112656268	130543105	119	3223											
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113079392	113079392	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gttaccagggagacaactgtAaattttcccatgatgatcta	13	12	8	8	0	1	3	0	2	1	1	2	4	2	3	2	1	2	2	2	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198581	exon8	c.A1036G	p.K346E	AACTGTAAATTTT	.	73	38	125	0	.	.	G	113079392	A	G	113079392	3	3	24	1	0	0	0	0	1	0	0	0	17630	363	13	4	1066	4	ZC3H6	2	113079392	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	423124	113079392	130119981	120	3224											
TTL	150465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113258837	113258837	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcttctcgatttcatagacaAccagggccaagtgcacgtga	11	9	10	11	2	2	2	1	1	1	1	3	3	2	2	2	1	2	2	2	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153712	exon4	c.A524C	p.N175T	TAGACAACCAGGG	.	123	54	240	0	.	.	C	113258837	A	C	113258837	3	2	24	1	0	0	0	0	1	0	0	0	16783	43	2	4	538	4	TTL	2	113258837	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	179445	113258837	129940536	121	3225											
PAX8	7849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	114002103	114002103	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaacatggtagggttctggCgtttgtagtccccaatcttc	8	13	10	10	1	2	0	0	0	2	0	4	0	3	0	2	3	1	4	2	3	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013952	exon4	c.G290A	p.R97H	TTCTGGCGTTTGT	.	33	17	40	0	.	.	T	114002103	C	T	114002103	3	4	24	1	0	0	0	0	1	0	0	0	11532	768	27	1	973	1	PAX8	2	114002103	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	743266	114002103	129197270	122	3226											
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128087578	128087578	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgatggcaatggttctaaatTagtagcctacaaaggagaaa	16	10	10	5	0	1	2	0	1	1	1	1	3	1	2	1	3	2	3	1	3	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006609	exon6	c.A385C	p.N129H	CTAAATTAGTAGC	.	72	32	135	0	.	.	G	128087578	T	G	128087578	3	3	24	1	0	0	0	0	1	0	0	0	9300	1754	61	4	1518	4	MAP3K2	2	128087578	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	14085475	128087578	115111795	123	3227											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128471295	128471295	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcgctgaattccctgtgaTcagggggaaacggaggccca	9	7	13	12	2	1	2	1	2	0	0	3	4	2	4	3	4	1	1	3	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018383	exon18	c.A3170C	p.D1057A	CTGTGATCAGGGG	.	55	25	73	0	.	.	G	128471295	T	G	128471295	3	3	24	1	0	0	0	0	1	0	0	0	17347	1435	50	4	860	4	WDR33	2	128471295	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	383717	128471295	114728078	124	3228											
POTEF	728378	hgsc.bcm.edu	37	chr2	130832686	130832686	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgttgtagaaggtgtggtGccagatcttctccatgtcat	7	14	11	9	1	3	2	1	0	2	2	5	2	3	2	2	2	1	2	2	2	2	3	rs376041561	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	POTEF,NS,carcinoma,0,1	POTEF	NM_001099771	exon17	c.C2359T	p.H787Y	TGTGGTGCCAGAT	.	52	3	77	0	.	0	A	130832686	G	A	130832686	3	1	24	1	0	0	0	0	1	0	0	0	12312	1319	46	3	872	3	POTEF	2	130832686	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2361391	130832686	112366687	125	3229											
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	132285743	132285743	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcagcactcggagaTgctggccaagctccatgagg	10	5	14	12	1	0	2	0	1	0	1	2	3	1	2	2	3	5	6	2	3	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001258304	exon1	c.T200C	p.M67T	CGGAGATGCTGGC	.	70	17	95	0	.	.	C	132285743	T	C	132285743	3	2	24	1	0	0	0	0	1	0	0	0	2867	1464	51	4	202	4	CCDC74A	2	132285743	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1453057	132285743	110913630	126	3230											
UBXN4	23190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136513166	136513166	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gtctactccatctgcgtcatTtgaacctaacaacacttgtg	10	13	6	12	1	3	1	1	1	2	0	4	1	4	1	2	0	5	0	2	0	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014607	exon5	c.T413G	p.F138C	CGTCATTTGAACC	.	21	7	40	0	.	.	G	136513166	T	G	136513166	3	3	24	1	0	0	0	0	1	0	0	0	16976	1841	64	4	431	4	UBXN4	2	136513166	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4227423	136513166	106686207	127	3231											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	148676088	148676088	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtcatattgcagaaaccatgGctagaggattggcatattta	13	12	10	6	0	1	2	1	0	0	2	1	3	1	3	1	3	2	3	1	3	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001616	exon7	c.G889A	p.A297T	ACCATGGCTAGAG	.	35	25	87	0	.	.	A	148676088	G	A	148676088	3	1	24	1	0	0	0	0	1	0	0	0	222	1203	42	3	915	3	ACVR2A	2	148676088	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	12162922	148676088	94523285	128	3232											
UPP2	151531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	158977952	158977952	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gggactgttgtaataacggaTatagctgtagactccttctt	10	14	10	7	1	1	1	0	0	1	1	2	3	2	3	1	2	2	4	1	2	5	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135098	exon7	c.T657G	p.D219E	AACGGATATAGCT	.	71	24	116	0	.	.	G	158977952	T	G	158977952	3	3	24	1	0	0	0	0	1	0	0	0	17073	1403	49	4	683	4	UPP2	2	158977952	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	10301864	158977952	84221421	129	3233											
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162273323	162273323	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggccagcacggaccggcgcaCcccgccttctccatcggcag	6	4	12	19	5	1	0	0	0	1	0	3	1	1	1	6	4	1	3	6	4	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006593	exon1	c.C402T	p.H134H	GGCGCACCCCGCC	.	27	15	39	0	.	.	T	162273323	C	T	162273323	2	4	24	1	0	0	0	0	0	0	0	1	15707	506	18	3		3	TBR1	2	162273323	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3295371	162273323	80926050	130	3234											
STK39	27347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	169038515	169038515	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcatccatactggtctggcaTttttccaagttgatccgttt	7	17	7	10	1	2	1	1	1	1	0	5	1	5	1	3	2	1	3	3	2	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,2	.	NM_013233	exon2	c.A294C	p.K98N	CTGGCATTTTTCC	.	32	14	48	0	.	95	G	169038515	T	G	169038515	3	3	24	1	0	0	0	0	1	0	0	0	15361	1490	52	4	1411	4	STK39	2	169038515	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6765192	169038515	74160858	131	3235											
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	169820752	169820752	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taggtagacttatgatctacAacagctaatggaggttcgtg	12	12	11	6	1	1	2	0	1	1	1	2	3	1	3	0	3	3	3	0	3	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003742	exon18	c.T2142G	p.V714V	ATCTACAACAGCT	.	50	24	58	0	.	.	C	169820752	A	C	169820752	2	2	24	1	0	0	0	0	0	0	0	1	42	117	5	4		4	ABCB11	2	169820752	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	782237	169820752	73378621	132	3236											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170734063	170734063	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtaccttatagctttaaagAgctctggacttacatatcct	12	14	6	9	0	1	1	0	0	1	1	2	2	2	2	2	1	4	3	2	1	7	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172070	exon4	c.A904G	p.S302G	TTAAAGAGCTCTG	.	55	30	85	0	.	.	G	170734063	A	G	170734063	3	3	24	1	0	0	0	0	1	0	0	0	16964	304	11	4	918	4	UBR3	2	170734063	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	913311	170734063	72465310	133	3237											
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	175346540	175346540	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggacaatgccaaagcAttccagtaaggctggaaaaa	19	5	9	8	0	0	0	0	0	0	0	1	2	1	2	2	3	2	3	2	3	6	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001267051	exon2	c.T145C	p.C49R	CAAAGCATTCCAG	.	26	17	35	0	.	.	G	175346540	A	G	175346540	3	3	24	1	0	0	0	0	1	0	0	0	6700	217	8	4	2527	4	GPR155	2	175346540	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4612477	175346540	67852833	134	3238											
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	187351163	187351163	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agcaaaaaggcggagcaaaaAaagaaggagaagattatcga	22	3	12	4	2	0	3	0	0	0	3	1	6	0	4	0	3	2	2	0	3	8	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018471	exon1	c.A54G	p.K18K	GCAAAAAAAGAAG	.	52	23	59	0	.	.	G	187351163	A	G	187351163	2	3	24	1	0	0	0	0	0	0	0	1	17626	11	1	4		4	ZC3H15	2	187351163	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	12004623	187351163	55848210	135	3239											
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	191859926	191859926	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgaacttgctgcagacTctccgcaactatagtgaacc	10	9	8	14	2	1	2	0	1	1	1	2	3	1	2	3	0	6	3	3	0	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007315	exon10	c.A805G	p.S269G	GCAGACTCTCCGC	.	35	11	67	0	.	.	C	191859926	T	C	191859926	3	2	24	1	0	0	0	0	1	0	0	0	15320	1551	54	4	1515	4	STAT1	2	191859926	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4508763	191859926	51339447	136	3240											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	196822115	196822115	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatacagccacgtggcttggActttgagccattcatccaga	10	10	10	11	1	1	2	1	1	0	1	2	4	2	3	3	2	3	1	3	2	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018897	exon19	c.T2948C	p.V983A	GCTTGGACTTTGA	.	33	17	55	0	.	.	G	196822115	A	G	196822115	3	3	24	1	0	0	0	0	1	0	0	0	4633	275	10	4	9314	4	DNAH7	2	196822115	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4962189	196822115	46377258	137	3241											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198288622	198288622	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcctggtcataataacctgtAgaatcgaggcccactccttg	10	11	8	12	1	1	1	1	0	0	1	4	2	3	1	4	2	1	1	4	2	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012433	exon2	c.T105G	p.S35S	ACCTGTAGAATCG	.	39	19	67	0	.	.	C	198288622	A	C	198288622	2	2	24	1	0	0	0	0	0	0	0	1	14203	407	15	4		4	SF3B1	2	198288622	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1466507	198288622	44910751	138	3242											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201478642	201478642	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agaggactctcatcatcagcTtcctcttcaagttctacctg	9	13	6	13	0	6	1	4	0	3	1	8	2	7	2	2	1	2	2	2	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159	exon15	c.T1564C	p.F522L	ATCAGCTTCCTCT	.	11	6	30	0	.	.	C	201478642	T	C	201478642	3	2	24	1	0	0	0	0	1	0	0	0	725	1609	56	4	1622	4	AOX1	2	201478642	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3190020	201478642	41720731	139	3243											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201531474	201531474	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagccattgacataggccAggtacgtgtaactgatgtgt	10	11	11	9	1	0	2	0	2	0	0	1	2	1	2	3	2	3	2	3	2	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159	exon32	c.A3608T	p.Q1203L	TAGGCCAGGTACG	.	64	27	85	0	.	.	T	201531474	A	T	201531474	3	4	24	1	0	0	0	0	1	0	0	0	725	202	7	5	3734	5	AOX1	2	201531474	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	52832	201531474	41667899	140	3244											
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204111487	204111487	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgccagagatggtaaTcttccagatattgtgaatag	11	15	9	6	0	2	3	0	1	2	2	3	4	3	3	2	1	1	1	2	1	4	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_177538	exon3	c.T132G	p.N44K	TGGTAATCTTCCA	.	29	13	79	0	.	.	G	204111487	T	G	204111487	3	3	24	1	0	0	0	0	1	0	0	0	4175	1432	50	4	142	4	CYP20A1	2	204111487	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2580013	204111487	39087886	141	3245											
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	209189656	209189656	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	aagttttggaacgaatcagtCgaatgacccaaggtgattta	14	11	10	6	2	1	2	1	2	0	0	2	5	1	3	1	2	1	1	1	2	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015040	exon19	c.C2353G	p.R785G	ATCAGTCGAATGA	.	54	19	79	0	.	.	G	209189656	C	G	209189656	3	3	24	1	0	0	0	0	1	0	0	0	11972	876	31	5	2434	5	PIKFYVE	2	209189656	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	5078169	209189656	34009717	142	3246											
VWC2L	402117	hgsc.bcm.edu	37	chr2	215279158	215279158	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgtgtctgtgctctaGatggacctgtttgcgaccaa	7	13	11	10	1	2	1	0	0	2	1	3	3	3	2	3	1	2	2	3	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	VWC2L,NS,carcinoma,0,1	VWC2L	NM_001080500	exon2	c.G241T	p.D81Y	GCTCTAGATGGAC	.	68	3	91	0	.	0	T	215279158	G	T	215279158	3	4	24	1	0	0	0	0	1	0	0	0	17304	942	33	3	243	3	VWC2L	2	215279158	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6089502	215279158	27920215	143	3247											
MREG	55686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	216809713	216809713	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagcatcaagtgcaatgAgacggtcctgcaaaaacaaa	16	6	9	10	1	1	1	1	1	0	1	2	2	2	1	1	1	5	4	1	1	5	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018000	exon5	c.T518G	p.L173R	GCAATGAGACGGT	.	18	9	19	0	.	.	C	216809713	A	C	216809713	3	2	24	1	0	0	0	0	1	0	0	0	9809	304	11	4	130	4	MREG	2	216809713	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1530555	216809713	26389660	144	3248											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219603258	219603258	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atgccagtgcccatatcgccTtgtctaccgctagctcccac	7	10	7	17	2	1	0	0	0	1	0	3	0	2	0	5	0	4	2	5	0	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014640	exon3	c.T859G	p.L287V	ATCGCCTTGTCTA	.	19	10	36	0	.	.	G	219603258	T	G	219603258	3	3	24	1	0	0	0	0	1	0	0	0	16791	1606	56	4	861	4	TTLL4	2	219603258	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2793545	219603258	23596115	145	3249											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu	37	chr2	220072731	220072731	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccactggaccatgattgctcTggggaggggcacccaaccag	9	6	13	13	0	1	1	0	1	1	0	1	3	1	3	4	5	2	2	4	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138802	exon4	c.T405C	p.S135S	TTGCTCTGGGGAG	.	9	4	11	0	.	.	C	220072731	T	C	220072731	2	2	24	1	0	0	0	0	0	0	0	1	17686	1567	55	4		4	ZFAND2B	2	220072731	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	469473	220072731	23126642	146	3250											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220072980	220072980	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aatctctcttccctacagacTtgctgccatctccagagcac	9	11	5	16	0	3	2	0	0	3	2	6	2	4	2	3	0	4	2	3	0	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138802	exon5	c.T437G	p.L146R	ACAGACTTGCTGC	.	19	10	43	0	.	.	G	220072980	T	G	220072980	3	3	24	1	0	0	0	0	1	0	0	0	17686	1609	56	4	455	4	ZFAND2B	2	220072980	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	249	220072980	23126393	147	3251											
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	220474091	220474091	+	Frame_Shift_Del	DEL	C	C	-																															ccaccctctgtcaggagctgCttgccgtgttgaccccagtc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052902	exon17	c.1965delG	p.L655fs	GAGCTGCTTGCCG	.	62	25	74	0	.	.	-	220474091	C	-	220474091	7	5	24	1	0	1	0	1	0	0	0	0	15344	797	28	0	2032	0	STK11IP	2	220474091	Frame_Shift_Del	DEL	C	TCGA-W5-AA39-01A-11D-A417-09	401111	220474091	22725282	148	3252	21	2									
STK11IP	114790	bcgsc.ca	37	chr2	220474092	220474092	+	Missense_Mutation	SNP	T	G	G																															caccctctgtcaggagctgcTtgccgtgttgaccccagtca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STK11IP	NM_052902	exon17	c.T1967G	p.L656R	AGCTGCTTGCCGT	.	61	27	71	0	.	152	G	220474092	G	G	220474092	3	3	24	1	0	0	0	0	1	0	0	0	15344	1609	56	4	2033	4	STK11IP	2	220474092	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1	220474092	22725281	149	3253	21	2									
WDFY1	57590	broad.mit.edu;bcgsc.ca	37	chr2	224758968	224758968	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tacctcttctctgctaacatCcatgttccacactgcaattc	9	14	3	15	0	2	0	0	0	2	0	6	0	4	0	3	0	4	3	3	0	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	WDFY1	NM_020830	exon8	c.G814A	p.D272N	TAACATCCATGTT	.	34	16	47	0	.	46	T	224758968	C	T	224758968	3	4	24	1	0	0	0	0	1	0	0	0	17328	855	30	3	438	3	WDFY1	2	224758968	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4284876	224758968	18440405	150	3254											
MRPL44	65080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	224828637	224828637	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagctttgcctttgtatttTgttggcttatactggttagt	6	20	9	6	0	0	0	0	0	0	0	0	0	0	0	1	2	3	5	1	2	4	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MRPL44,colon,carcinoma,0,1	MRPL44	NM_022915	exon3	c.T813G	p.F271L	GTATTTTGTTGGC	.	66	29	117	0	.	0	G	224828637	T	G	224828637	3	3	24	1	0	0	0	0	1	0	0	0	9857	1809	63	4	823	4	MRPL44	2	224828637	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	69669	224828637	18370736	151	3255											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225738772	225738772	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagatttgagttgagggCtttacagatgatcatgattc	11	14	11	5	0	1	7	1	5	0	2	2	7	1	7	0	1	1	2	0	1	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014689	exon11	c.G1198T	p.A400S	TGAGGGCTTTACA	.	45	13	81	0	.	.	A	225738772	C	A	225738772	3	1	24	1	0	0	0	0	1	0	0	0	4712	797	28	3	5546	3	DOCK10	2	225738772	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	910135	225738772	17460601	152	3256											
IRS1	3667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	227661428	227661428	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tgctgctgctggggccacctCcaatgtcaggagagcagcca	8	7	13	13	0	1	1	1	0	0	1	2	2	2	1	4	3	5	4	4	3	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005544	exon1	c.G2027A	p.G676E	CCACCTCCAATGT	.	24	13	25	0	.	.	T	227661428	C	T	227661428	3	4	24	1	0	0	0	0	1	0	0	0	7884	855	30	3	1705	3	IRS1	2	227661428	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1922656	227661428	15537945	153	3257											
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228118346	228118346	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgaccctaactggcccagatAacagaacggtaactctgcga	13	7	9	12	2	1	3	0	1	1	2	1	4	1	3	2	2	5	1	2	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000091	exon13	c.A757G	p.N253D	CCAGATAACAGAA	.	35	14	46	0	.	.	G	228118346	A	G	228118346	3	3	24	1	0	0	0	0	1	0	0	0	3714	362	13	4	807	4	COL4A3	2	228118346	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	456918	228118346	15081027	154	3258											
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228401415	228401415	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atcaagtgtgcctgctccatTtggaggtatgtgcttctggt	6	15	12	8	0	2	0	1	0	1	0	3	1	3	1	2	3	3	3	2	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135187	exon10	c.T1352G	p.F451C	CTCCATTTGGAGG	.	38	15	51	0	.	.	G	228401415	T	G	228401415	3	3	24	1	0	0	0	0	1	0	0	0	377	1841	64	4	1390	4	AGFG1	2	228401415	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	283069	228401415	14797958	155	3259											
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233422641	233422641	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccctgcagtacaactacacTttttggtactccaggagaac	11	10	7	13	0	0	1	0	0	0	1	1	2	1	1	3	2	6	3	3	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004846	exon3	c.T183G	p.T61T	CTACACTTTTTGG	.	34	15	60	0	.	.	G	233422641	T	G	233422641	2	3	24	1	0	0	0	0	0	0	0	1	5058	1596	56	4		4	EIF4E2	2	233422641	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5021226	233422641	9776732	156	3260											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	233660789	233660809	+	In_Frame_Del	DEL	GGCTTATCTCCAAGACAGTGC	GGCTTATCTCCAAGACAGTGC	-																															tagcaagctgagaaaatggtGgcttatctccaagacagtgc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGCTTATCTCCAAGACAGTGC	GGCTTATCTCCAAGACAGTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001103147	exon16	c.1559_1579del	p.520_527del	AATGGTGGCTTAT	.	29	11	67	0	.	.	-	233660809	GGCTTATCTCCAAGACAGTGC	-	233660789	7	5	24	1	0	1	0	1	0	0	0	0	6420	1335	47	0	1613	0	GIGYF2	2	233660789	In_Frame_Del	DEL	GGCTTATCTCCAAGACAGTGC	TCGA-W5-AA39-01A-11D-A417-09	238148	233660789	9538584	157	3261											
UBE2F	140739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238934042	238934042	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aacatcacagagacaggggaAatatgtctgaggtgagttta	15	9	12	5	0	2	3	1	2	1	1	2	5	2	4	0	3	1	1	0	3	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080678	exon6	c.A342G	p.E114E	AGGGGAAATATGT	.	27	13	39	0	.	.	G	238934042	A	G	238934042	2	3	24	1	0	0	0	0	0	0	0	1	16916	11	1	4		4	UBE2F	2	238934042	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5273253	238934042	4265331	158	3262											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241451322	241451322	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgtgcagagccgtccTgcccccctcctccgggaggg	4	6	14	17	2	0	1	0	0	0	1	3	2	3	2	8	3	3	1	8	3	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016552	exon10	c.A1975G	p.R659G	CCGTCCTGCCCCC	.	27	13	50	0	.	.	C	241451322	T	C	241451322	3	2	24	1	0	0	0	0	1	0	0	0	630	1579	55	4	882	4	ANKMY1	2	241451322	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2517280	241451322	1748051	159	3263											
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242008393	242008393	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtgggctcaggggagaggagCaccccacagagagcctggcc	9	3	17	12	0	1	2	1	0	0	2	1	5	1	3	4	5	2	2	4	5	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080437	exon23	c.C3262A	p.H1088N	GAGGAGCACCCCA	.	70	27	73	0	.	.	A	242008393	C	A	242008393	3	1	24	1	0	0	0	0	1	0	0	0	14899	710	25	3	3352	3	SNED1	2	242008393	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	557071	242008393	1190980	160	3264											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242433442	242433442	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggtggatggaggtgatccagGgggccagcagctcagccggg	7	5	20	9	1	1	1	1	1	0	0	2	3	2	3	3	7	3	2	3	7	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014808	exon27	c.G3067A	p.G1023R	ATCCAGGGGGCCA	.	49	19	57	0	.	.	A	242433442	G	A	242433442	3	1	24	1	0	0	0	0	1	0	0	0	5710	1232	43	3	3169	3	FARP2	2	242433442	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	425049	242433442	765931	161	3265											
ITPR1	3708	broad.mit.edu	37	chr3	4878503	4878503	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggatgagagccatgtcattgGtcagcagtgattctgaagga	11	10	14	6	0	3	3	2	3	1	1	3	6	3	5	1	3	2	1	1	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ITPR1	NM_001168272	exon60	c.G8029T	p.V2677F	TCATTGGTCAGCA	.	25	4	44	0	.	659	T	4878503	G	T	4878503	3	4	24	1	0	0	0	0	1	0	0	0	7964	1261	44	3	8308	3	ITPR1	3	4878503	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09		4878503	193143927	162	3266											
HRH1	3269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	11301253	11301253	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagacctcggtgcgccgagAggacaagtgtgagacagact	11	5	15	10	3	0	4	0	1	0	4	1	7	0	5	2	2	1	1	2	2	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000861	exon3	c.A530G	p.E177G	GCCGAGAGGACAA	.	7	5	26	0	.	.	G	11301253	A	G	11301253	3	3	24	1	0	0	0	0	1	0	0	0	7396	304	11	4	532	4	HRH1	3	11301253	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6422750	11301253	186721177	163	3267											
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	19432012	19432012	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacaacttatgtcagcaagtCtggccaagttatctttgaag	13	12	8	8	0	3	1	1	1	2	0	3	1	3	1	1	1	3	2	1	1	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144633	exon6	c.C851A	p.S284Y	GCAAGTCTGGCCA	.	24	18	49	0	.	.	A	19432012	C	A	19432012	3	1	24	1	0	0	0	0	1	0	0	0	8082	913	32	3	873	3	KCNH8	3	19432012	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	8130759	19432012	178590418	164	3268											
TGFBR2	7048	hgsc.bcm.edu;bcgsc.ca	37	chr3	30664759	30664775	+	Frame_Shift_Del	DEL	AGACATAGTAAAGTATC	AGACATAGTAAAGTATC	-																															ataggactgcccatccactgAgacatagtaaagtatcatta																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGACATAGTAAAGTATC	AGACATAGTAAAGTATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001024847	exon2	c.162_169del	p.54_57del	CCACTGAGACATA	.	20	4	99	0	.	.	-	30664775	AGACATAGTAAAGTATC	-	30664759	7	5	24	1	0	1	0	1	0	0	0	0	15882	296	11	0	169	0	TGFBR2	3	30664759	Frame_Shift_Del	DEL	AGACATAGTAAAGTATC	TCGA-W5-AA39-01A-11D-A417-09	11232747	30664759	167357671	165	3269											
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	30686364	30686364	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcatgagcaactgcagcatcAcctccatctgtgagaagcca	12	7	9	13	0	2	2	1	2	1	1	3	3	3	2	3	0	5	4	3	0	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001024847	exon3	c.A295G	p.T99A	AGCATCACCTCCA	.	12	11	65	0	.	.	G	30686364	A	G	30686364	3	3	24	1	0	0	0	0	1	0	0	0	15882	159	6	4	305	4	TGFBR2	3	30686364	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	21605	30686364	167336066	166	3270											
XYLB	9942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38401886	38401886	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gacggtcacttctccagtacTaatgtgggtccaggtaagcg	9	10	12	10	2	2	0	1	0	1	0	4	1	3	0	2	3	2	2	2	3	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005108	exon3	c.T197G	p.L66R	CAGTACTAATGTG	.	13	11	37	0	.	.	G	38401886	T	G	38401886	3	3	24	1	0	0	0	0	1	0	0	0	17522	1522	53	4	207	4	XYLB	3	38401886	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7715522	38401886	159620544	167	3271											
MYRIP	25924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	40231505	40231505	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagactttgactggagtgagGccttgagcaagctgtgtccc	9	10	13	9	0	0	4	0	3	0	1	1	5	1	5	2	2	2	2	2	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015460	exon10	c.G1216A	p.A406T	AGTGAGGCCTTGA	.	9	7	32	0	.	.	A	40231505	G	A	40231505	3	1	24	1	0	0	0	0	1	0	0	0	10148	1203	42	3	1250	3	MYRIP	3	40231505	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1829619	40231505	157790925	168	3272											
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45637209	45637209	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctggcctgccttccccaaacTtggagaacggagcaccagct	9	7	10	15	1	0	1	0	0	0	1	1	3	1	2	5	3	5	2	5	3	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014240	exon1	c.T838G	p.L280V	CCAAACTTGGAGA	.	22	16	77	0	.	.	G	45637209	T	G	45637209	3	3	24	1	0	0	0	0	1	0	0	0	8838	1606	56	4	840	4	LIMD1	3	45637209	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5405704	45637209	152385221	169	3273											
MON1A	84315	broad.mit.edu;bcgsc.ca	37	chr3	49967045	49967045	+	Frame_Shift_Del	DEL	T	T	-																															gctggcagtcaactcacctgTttctcagaggagtccaggac																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MON1A	NM_032355	exon1	c.275delA	p.N92fs	CACCTGTTTCTCA	.	12	9	37	0	.	41	-	49967045	T	-	49967045	7	5	24	1	0	1	0	1	0	0	0	0	9747	1725	60	0	1707	0	MON1A	3	49967045	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	4329836	49967045	148055385	170	3274											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52441997	52441997	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agggctgaaacccttggtgaAgtccttcatgcgactcaggg	9	9	13	10	1	2	2	2	2	0	0	3	3	3	2	2	3	2	1	2	3	2	2	rs113802540	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004656	exon5	c.T352G	p.F118V	TGGTGAAGTCCTT	.	14	12	44	0	.	.	C	52441997	A	C	52441997	3	2	24	1	0	0	0	0	1	0	0	0	1309	72	3	4	1889	4	BAP1	3	52441997	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2474952	52441997	145580433	171	3275											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52712524	52712533	+	Frame_Shift_Del	DEL	TGGTGCCCTA	TGGTGCCCTA	-																															cttcgaactcaccttcgcttTggtgccctaatgaagagctc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TGGTGCCCTA	TGGTGCCCTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018313	exon3	c.220_229del	p.74_77del	TCGCTTTGGTGCC	.	28	14	71	0	.	.	-	52712533	TGGTGCCCTA	-	52712524	7	5	24	1	0	1	0	1	0	0	0	0	11538	1799	63	0	4788	0	PBRM1	3	52712524	Frame_Shift_Del	DEL	TGGTGCCCTA	TCGA-W5-AA39-01A-11D-A417-09	270527	52712524	145309906	172	3276											
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52812387	52812387	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgtgttcatccggagtttgaAagtcaactgcaaagtcacct	11	11	9	10	2	3	1	3	1	0	0	4	2	4	2	2	1	2	3	2	1	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002215	exon3	c.A170C	p.K57T	GTTTGAAAGTCAA	.	16	9	49	0	.	.	C	52812387	A	C	52812387	3	2	24	1	0	0	0	0	1	0	0	0	7947	14	1	4	180	4	ITIH1	3	52812387	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	99863	52812387	145210043	173	3277											
ERC2	26059	hgsc.bcm.edu	37	chr3	56026205	56026205	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actcgtcgcggtagtaagacGcctctttatcgagctgtttt	7	14	10	10	5	1	1	0	0	1	1	4	2	1	1	1	1	1	4	1	1	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ERC2_ENST00000288221,caecum,carcinoma,0,2	ERC2_ENST00000288221	NM_015576	exon11	c.C2135A	p.A712E	TAAGACGCCTCTT	.	20	2	60	0	.	0	T	56026205	G	T	56026205	3	4	24	1	0	0	0	0	1	0	0	0	5239	1087	38	2	756	2	ERC2	3	56026205	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3213818	56026205	141996225	174	3278											
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97594051	97594051	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgggattctgaacttcaggCtaatacttcaaaaattctga	13	14	7	7	0	4	2	2	2	2	0	4	3	4	3	0	2	2	1	0	2	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153605	exon4	c.C4013G	p.A1338G	TTCAGGCTAATAC	.	63	17	72	0	.	.	G	97594051	C	G	97594051	3	3	24	1	0	0	0	0	1	0	0	0	3936	812	28	5		5	CRYBG3	3	97594051	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	41567846	97594051	100428379	175	3279											
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97868425	97868425	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtacttactccttgggaatTtagcttttgtggatgctttg	6	19	10	6	0	0	0	0	0	0	0	1	2	1	2	1	2	4	3	1	2	4	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005514	exon1	c.T196G	p.L66V	GGGAATTTAGCTT	.	104	20	151	0	.	.	G	97868425	T	G	97868425	3	3	24	1	0	0	0	0	1	0	0	0	11207	1838	64	4	198	4	OR5H14	3	97868425	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	274374	97868425	100154005	176	3280											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	101395620	101395620	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ctgccgccgctggtaatacaGagtcccgccgcgcaccacgt	7	6	11	17	6	0	1	0	0	0	1	1	1	1	1	5	1	2	3	5	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014415	exon1	c.C139G	p.L47V	AATACAGAGTCCC	.	27	10	17	0	.	.	C	101395620	G	C	101395620	3	2	24	1	0	0	0	0	1	0	0	0	17583	933	33	5	3066	5	ZBTB11	3	101395620	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3527195	101395620	96626810	177	3281											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376107	113376107	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgccctgcttgttgttgttgCtgttgctgctgctgctgctg	0	18	13	10	0	0	0	0	0	0	0	0	0	0	0	1	0	8	11	1	0	0	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KIAA2018,colon,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC	.	23	5	22	1	.	0	T	113376107	C	T	113376107	2	4	24	1	0	0	0	0	0	0	0	1	8310	796	28	3		3	KIAA2018	3	113376107	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	11980487	113376107	84646323	178	3282											
MYLK	4638	hgsc.bcm.edu;ucsc.edu	37	chr3	123332738	123332738	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	taaatgaaatctagctgcacTagtatcttaaggtgccaact	14	12	7	8	0	2	1	0	1	2	0	2	1	2	1	1	1	4	3	1	1	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTGCACTAGTATC	.	61	16	65	0	.	.	C	123332738	T	C	123332738	1	2	24	0	1	0	0	0	0	0	0	0	10104	1537	53	4		4	MYLK	3	123332738	RNA	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9956631	123332738	74689692	179	3283											
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124826699	124826699	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agactctttgggcaggtcccTcagagccgtaactgggagct	8	9	13	11	1	2	2	1	0	1	2	3	3	3	3	2	3	3	3	2	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024628	exon10	c.A1331T	p.E444V	GGTCCCTCAGAGC	.	14	6	18	0	.	.	A	124826699	T	A	124826699	3	1	24	1	0	0	0	0	1	0	0	0	14444	1551	54	5	833	5	SLC12A8	3	124826699	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1493961	124826699	73195731	180	3284											
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	129546839	129546839	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacttccctttggggcctctGgcttgccccgcctactatgc	3	12	10	16	1	1	0	0	0	1	0	2	1	2	0	5	3	3	1	5	3	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001017395	exon3	c.C383A	p.P128Q	GCCTCTGGCTTGC	.	36	14	50	0	.	.	T	129546839	G	T	129546839	3	4	24	1	0	0	0	0	1	0	0	0	16052	1348	47	3	1594	3	TMCC1	3	129546839	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4720140	129546839	68475591	181	3285											
PIK3R4	30849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130452666	130452666	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagctagtttggaatcAcagtatttaagggtctgtag	13	12	11	5	0	2	0	1	0	1	0	2	1	2	1	0	2	2	5	0	2	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014602	exon4	c.T1176C	p.C392C	GGAATCACAGTAT	.	61	20	83	0	.	.	G	130452666	A	G	130452666	2	3	24	1	0	0	0	0	0	0	0	1	11969	157	6	4		4	PIK3R4	3	130452666	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	905827	130452666	67569764	182	3286											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	136059372	136059372	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcctcaaattcttcattcatAtcttctaactggcttcggga	9	16	5	11	1	6	0	3	0	3	0	8	1	7	1	1	2	1	1	1	2	3	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005862	exon32	c.T3633C	p.D1211D	ATTCATATCTTCT	.	53	14	64	0	.	.	G	136059372	A	G	136059372	2	3	24	1	0	0	0	0	0	0	0	1	15298	446	16	4		4	STAG1	3	136059372	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5606706	136059372	61963058	183	3287											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	138407783	138407783	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcttcaaggatgacaccaaaTtgtactgagacagcaggaat	15	8	10	8	0	1	2	1	2	0	1	1	5	1	4	1	2	2	3	1	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006219	exon14	c.A2070C	p.Q690H	ACCAAATTGTACT	.	41	15	45	0	.	.	G	138407783	T	G	138407783	3	3	24	1	0	0	0	0	1	0	0	0	11962	1490	52	4	1176	4	PIK3CB	3	138407783	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2348411	138407783	59614647	184	3288											
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	141162287	141162287	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgttccaaagcctttgacAgcagcactctgctcagtgcc	8	10	9	14	0	2	1	1	1	1	0	3	1	3	1	3	0	5	5	3	0	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080412	exon8	c.A1057T	p.S353C	TTTGACAGCAGCA	.	35	17	33	0	.	.	T	141162287	A	T	141162287	3	4	24	1	0	0	0	0	1	0	0	0	17598	188	7	5	1059	5	ZBTB38	3	141162287	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2754504	141162287	56860143	185	3289											
PAQR9	344838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	142681920	142681920	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgggatgaagtgcgtccagaAgttgagcgtctcgttggtag	8	10	16	7	4	1	3	0	2	1	1	3	4	2	4	1	2	2	3	1	2	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198504	exon1	c.T259G	p.F87V	TCCAGAAGTTGAG	.	14	4	14	0	.	.	C	142681920	A	C	142681920	3	2	24	1	0	0	0	0	1	0	0	0	11489	72	3	4	878	4	PAQR9	3	142681920	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1519633	142681920	55340510	186	3290											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148894184	148894184	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aatgtcaaagacatcagaacTataaactcccctgtgcttaa	16	10	5	10	0	2	2	2	0	0	2	3	2	3	2	2	0	3	1	2	0	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000096	exon18	c.A3034G	p.S1012G	CAGAACTATAAAC	.	49	17	59	0	.	.	C	148894184	T	C	148894184	3	2	24	1	0	0	0	0	1	0	0	0	3810	1522	53	4	171	4	CP	3	148894184	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6212264	148894184	49128246	187	3291											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148899805	148899805	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagtacctggtaatgttggAgtaactgtagaactctctgt	10	14	11	6	0	1	2	0	1	1	1	2	3	1	3	1	2	3	5	1	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000096	exon14	c.T2541G	p.T847T	TGTTGGAGTAACT	.	57	35	82	0	.	.	C	148899805	A	C	148899805	2	2	24	1	0	0	0	0	0	0	0	1	3810	291	11	4		4	CP	3	148899805	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5621	148899805	49122625	188	3292											
TM4SF18	116441	hgsc.bcm.edu;bcgsc.ca	37	chr3	149051002	149051002	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcatacttaccatgatgccTgagaaacagattccttcaaa	14	12	5	10	0	2	3	2	2	0	2	3	4	3	3	3	0	4	0	3	0	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184723	exon1	c.A168G	p.S56S	GATGCCTGAGAAA	.	48	4	49	0	.	.	C	149051002	T	C	149051002	2	2	24	1	0	0	0	0	0	0	0	1	16027	1567	55	4		4	TM4SF18	3	149051002	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	151197	149051002	48971428	189	3293											
SELT	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	150340940	150340940	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agctcctagcatctggcagtGgggccaagaaaataaggtat	13	8	12	8	0	1	1	0	0	1	1	2	1	2	1	2	4	2	4	2	4	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.W120*	.	.	GGCAGTGGGGCCA	.	93	53	101	0	.	.	A	150340940	G	A	150340940	4	1	24	1	0	0	0	0	0	1	0	0	14076	1357	47	3	369	3	SELT	3	150340940	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1289938	150340940	47681490	190	3294											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154858051	154858051	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atgacattggcccagatccaAaataacttttcactagagat	15	11	6	9	0	1	3	1	1	0	2	2	4	2	3	2	1	1	0	2	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007287	exon10	c.A927C	p.Q309H	GATCCAAAATAAC	.	76	46	52	0	.	.	C	154858051	A	C	154858051	3	2	24	1	0	0	0	0	1	0	0	0	9693	11	1	4	961	4	MME	3	154858051	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4517111	154858051	43164379	191	3295											
MLF1	4291	hgsc.bcm.edu	37	chr3	158315944	158315944	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttattccaaaataggagatGaaccgccaaaggtttttcag	14	11	8	8	1	1	2	1	1	0	1	2	3	2	2	3	2	1	1	3	2	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001195432	exon6	c.G448T	p.E150X	GGAGATGAACCGC	.	91	4	93	0	.	.	T	158315944	G	T	158315944	4	4	24	1	0	0	0	0	0	1	0	0	9662	1291	45	3	369	3	MLF1	3	158315944	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3457893	158315944	39706486	192	3296											
SMC4	10051	hgsc.bcm.edu;bcgsc.ca	37	chr3	160150976	160150976	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgattttaaaaatgtgtcCattgttgcattttatatata	12	20	5	4	0	0	1	0	1	0	0	1	1	1	1	1	0	1	2	1	0	7	10	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005496	exon22	c.C3693A	p.S1231S	TGTGTCCATTGTT	.	87	4	92	0	.	.	A	160150976	C	A	160150976	2	1	24	1	0	0	0	0	0	0	0	1	14839	581	21	3		3	SMC4	3	160150976	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1835032	160150976	37871454	193	3297											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169820688	169820688	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggcttacgattccaacgacTaagtgcaaattttttagaac	14	12	7	8	2	0	1	0	0	0	1	1	3	1	1	1	1	4	2	1	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024947	exon13	c.A2503T	p.S835C	AACGACTAAGTGC	.	63	27	70	0	.	.	A	169820688	T	A	169820688	3	1	24	1	0	0	0	0	1	0	0	0	11866	1522	53	5	496	5	PHC3	3	169820688	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9669712	169820688	28201742	194	3298											
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	170715825	170715825	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggtttctggaactttaaaaAatgtgaacagggtaaaggcc	14	11	11	5	0	1	1	0	1	1	0	1	2	1	2	1	4	2	2	1	4	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000340	exon11	c.T1442G	p.F481C	TTAAAAAATGTGA	.	47	22	40	0	.	.	C	170715825	A	C	170715825	3	2	24	1	0	0	0	0	1	0	0	0	14599	14	1	4	136	4	SLC2A2	3	170715825	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	895137	170715825	27306605	195	3299											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	171394504	171394504	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atgatagcaacatccaagtaCttttgtgaagttccagcgct	12	12	8	9	1	0	2	0	2	0	0	2	2	2	2	2	0	4	4	2	0	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001130081	exon18	c.2001+1G>A	.	CAAGTACTTTTGT	.	30	16	61	0	.	.	T	171394504	C	T	171394504	5	4	24	1	0	0	0	0	0	0	1	0	12093	579	20	3	1148	3	PLD1	3	171394504	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	678679	171394504	26627926	196	3300											
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	182756844	182756844	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaaggctgtacctcagtttTgtcaatgccgcctggcgatc	7	11	11	12	3	2	0	2	0	0	0	3	2	2	0	3	2	2	3	3	2	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020166	exon12	c.A1347T	p.T449T	CAGTTTTGTCAAT	.	58	15	47	0	.	.	A	182756844	T	A	182756844	2	1	24	1	0	0	0	0	0	0	0	1	9424	1799	63	5		5	MCCC1	3	182756844	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	11362340	182756844	15265586	197	3301											
YEATS2	55689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	183528369	183528369	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaatattgaatgaggaccagTgagcggagtgaggtgccctg	11	8	16	6	1	0	4	0	4	0	0	0	7	0	6	2	3	2	0	2	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018023	exon31	c.T4267C	p.X1423R	GACCAGTGAGCGG	.	32	12	42	0	.	.	C	183528369	T	C	183528369	3	2	24	1	0	0	0	0	1	0	0	0	17532	1709	59	4	4385	4	YEATS2	3	183528369	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	771525	183528369	14494061	198	3302											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184039802	184039802	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcaggagaagctgagagtgAgaaaggaggagaggaactgc	16	3	18	4	0	0	4	0	2	0	4	0	10	0	6	0	4	4	2	0	4	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001194946	exon11	c.A1451T	p.E484V	AGAGTGAGAAAGG	.	79	26	111	0	.	.	T	184039802	A	T	184039802	3	4	24	1	0	0	0	0	1	0	0	0	5064	304	11	5	1460	5	EIF4G1	3	184039802	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	511433	184039802	13982628	199	3303											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184040641	184040641	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctctaaacctagaggagaaaAaacgttacgaccgtgagttc	15	8	9	9	3	1	3	0	1	1	2	2	5	1	3	2	1	3	2	2	1	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001194946	exon14	c.A1849C	p.K617Q	GAGAAAAAACGTT	.	54	15	67	0	.	.	C	184040641	A	C	184040641	3	2	24	1	0	0	0	0	1	0	0	0	5064	15	1	4	1870	4	EIF4G1	3	184040641	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	839	184040641	13981789	200	3304											
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185329428	185329449	+	Frame_Shift_Del	DEL	GTGTTTCTAAGTTCTCAAAGAA	GTGTTTCTAAGTTCTCAAAGAA	-																															tctgatctccctcactttttGtgtttctaagttctcaaaga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTGTTTCTAAGTTCTCAAAGAA	GTGTTTCTAAGTTCTCAAAGAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021627	exon8	c.723_732del	p.241_244del	CTTTTTGTGTTTC	.	38	8	58	0	.	.	-	185329449	GTGTTTCTAAGTTCTCAAAGAA	-	185329428	7	5	24	1	0	1	0	1	0	0	0	0	14101	1392	48	0		0	SENP2	3	185329428	Frame_Shift_Del	DEL	GTGTTTCTAAGTTCTCAAAGAA	TCGA-W5-AA39-01A-11D-A417-09	1288787	185329428	12693002	201	3305											
IGF2BP2	10644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185542734	185542734	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggctcaggttcccgatgtaAagcttgttcatcatccgtct	7	13	10	11	2	4	0	3	0	1	0	6	1	6	0	2	2	1	5	2	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001007225	exon1	c.T15G	p.L5L	GATGTAAAGCTTG	.	112	31	136	0	.	.	C	185542734	A	C	185542734	2	2	24	1	0	0	0	0	0	0	0	1	7618	1	1	4		4	IGF2BP2	3	185542734	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	213306	185542734	12479696	202	3306											
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186269020	186269020	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtcctgtattaatcaaccaTtcataaaacttgttctctac	12	16	3	10	0	3	0	2	0	1	0	5	0	4	0	2	0	3	2	2	0	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001134415	exon7	c.A1593C	p.E531D	CAACCATTCATAA	.	48	16	71	0	.	.	G	186269020	T	G	186269020	3	3	24	1	0	0	0	0	1	0	0	0	15692	1490	52	4	84	4	TBCCD1	3	186269020	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	726286	186269020	11753410	203	3307											
ST6GAL1	6480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186760575	186760575	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtcatctgtgtgtggaaggaAaagaagaaagggagttacta	15	9	14	3	0	2	2	1	0	1	2	2	5	2	5	0	3	1	1	0	3	7	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ST6GAL1,right_lower_lobe,carcinoma,+2,1	ST6GAL1	NM_003032	exon3	c.A84C	p.E28D	GAAGGAAAAGAAG	.	42	17	58	0	.	36	C	186760575	A	C	186760575	3	2	24	1	0	0	0	0	1	0	0	0	15277	11	1	4	86	4	ST6GAL1	3	186760575	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	491555	186760575	11261855	204	3308											
RTP4	64108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	187088734	187088734	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaatatgagatgcctgAgttctcctcggatagcacca	10	10	9	12	1	1	2	0	2	1	1	4	4	2	3	4	1	2	2	4	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022147	exon2	c.A314T	p.E105V	TGCCTGAGTTCTC	.	25	4	47	0	.	.	T	187088734	A	T	187088734	3	4	24	1	0	0	0	0	1	0	0	0	13788	304	11	5	320	5	RTP4	3	187088734	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	328159	187088734	10933696	205	3309											
CLDN1	9076	bcgsc.ca	37	chr3	190030784	190030784	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gattgctatcactcccaggaGgatgccaaccaccatcaagg	12	7	9	13	0	2	0	2	0	0	0	3	3	3	2	4	3	3	1	4	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CLDN1	NM_021101	exon2	c.C265A	p.L89I	CCAGGAGGATGCC	.	47	4	45	0	.	23	T	190030784	T	T	190030784	3	4	24	1	0	0	0	0	1	0	0	0	3494	1000	35	3	382	3	CLDN1	3	190030784	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2942050	190030784	7991646	206	3310											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	194152559	194152559	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcttcagcaataatcacttTatcctgaggtagaatcattc	12	14	6	9	0	3	2	3	1	0	1	5	2	4	2	1	1	2	3	1	1	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024524	exon21	c.A2308T	p.K770X	TCACTTTATCCTG	.	55	30	56	0	.	.	A	194152559	T	A	194152559	4	1	24	1	0	0	0	0	0	1	0	0	1124	1763	61	5	1420	5	ATP13A3	3	194152559	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4121775	194152559	3869871	207	3311											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	194169221	194169221	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggctttgacgagttctccaGtgtagaaacgagtctgaata	11	12	11	7	2	2	3	0	2	2	1	3	5	2	3	1	1	1	3	1	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024524	exon11	c.C1115T	p.T372I	TCTCCAGTGTAGA	.	79	24	56	0	.	.	A	194169221	G	A	194169221	3	1	24	1	0	0	0	0	1	0	0	0	1124	1029	36	3	2653	3	ATP13A3	3	194169221	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	16662	194169221	3853209	208	3312											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	195509900	195509900	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactgaggaagcgtcggtgaCaggaagaggggtggtgtgac	10	6	19	6	2	0	4	0	3	0	1	1	6	0	6	0	6	1	0	0	6	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018406	exon2	c.G8551A	p.V2851I	CGGTGACAGGAAG	.	97	38	149	0	.	.	T	195509900	C	T	195509900	3	4	24	1	0	0	0	0	1	0	0	0	10026	478	17	3		3	MUC4	3	195509900	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1340679	195509900	2512530	209	3313											
MUC4	4585	hgsc.bcm.edu	37	chr3	195511212	195511212	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagatgggtggcGtgacctgtggatgctgagga	9	8	19	5	1	0	4	0	3	0	1	0	7	0	7	1	5	1	1	1	5	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.C7239G	p.H2413Q	GGTGGCGTGACCT	.	133	5	240	2	.	0	C	195511212	G	C	195511212	3	2	24	1	0	0	0	0	1	0	0	0	10026	1136	40	5		5	MUC4	3	195511212	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1312	195511212	2511218	210	3314											
MUC4	4585	hgsc.bcm.edu	37	chr3	195512373	195512373	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcggcgtggtgtcaccagtGgatgctgaggaaaggctggt	8	8	18	7	2	1	1	1	1	0	0	1	3	1	3	1	6	2	2	1	6	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,4	.	NM_018406	exon2	c.C6078A	p.S2026S	ACCAGTGGATGCT	.	67	3	149	0	.	1505	T	195512373	G	T	195512373	2	4	24	1	0	0	0	0	0	0	0	1	10026	1335	47	3		3	MUC4	3	195512373	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1161	195512373	2510057	211	3315											
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195609127	195609127	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacagcgtagcggctcagagTccccaggaggaagtggccct	9	5	14	13	2	1	1	1	0	0	1	2	3	2	3	3	4	2	2	3	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001010938	exon6	c.A871T	p.T291S	TCAGAGTCCCCAG	.	48	16	70	0	.	.	A	195609127	T	A	195609127	3	1	24	1	0	0	0	0	1	0	0	0	16378	1667	58	5	2523	5	TNK2	3	195609127	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	96754	195609127	2413303	212	3316											
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196626893	196626893	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acacatgctggatatggacgAcctggcgactctggatggtc	9	9	13	10	2	1	0	0	0	1	0	2	5	1	3	1	5	1	1	1	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152699	exon4	c.A1718C	p.D573A	TGGACGACCTGGC	.	42	12	54	0	.	.	C	196626893	A	C	196626893	3	2	24	1	0	0	0	0	1	0	0	0	14103	275	10	4	1728	4	SENP5	3	196626893	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1017766	196626893	1395537	213	3317											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	435664	435674	+	Frame_Shift_Del	DEL	GGGTTTCTCTC	GGGTTTCTCTC	-																															ccacattctccacatgtgtaGggtttctctccagtatgaat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGTTTCTCTC	GGGTTTCTCTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133474	exon3	c.2583_2593del	p.861_865del	TGTGTAGGGTTTC	.	51	13	85	0	.	.	-	435674	GGGTTTCTCTC	-	435664	7	5	24	1	0	1	0	1	0	0	0	0	18176	987	35	0	183	0	ZNF721	4	435664	Frame_Shift_Del	DEL	GGGTTTCTCTC	TCGA-W5-AA39-01A-11D-A417-09		435664	190718612	214	3318											
TMEM128	85013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	4242110	4242110	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggctggatacttgacatcAtattctccaattccacaata	14	12	5	10	0	2	1	1	1	1	0	4	2	3	2	2	2	1	1	2	2	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032927	exon3	c.T264C	p.Y88Y	GACATCATATTCT	.	79	37	85	0	.	.	G	4242110	A	G	4242110	2	3	24	1	0	0	0	0	0	0	0	1	16101	224	8	4		4	TMEM128	4	4242110	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3806446	4242110	186912166	215	3319											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	17600083	17600083	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaccctctgcaggttgAtaacactgatgctgagggga	9	12	12	8	0	1	4	0	4	1	0	1	5	1	5	1	3	3	3	1	3	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015907	exon10	c.A1082C	p.D361A	AGGTTGATAACAC	.	56	8	77	0	.	.	C	17600083	A	C	17600083	3	2	24	1	0	0	0	0	1	0	0	0	8662	333	12	4	1120	4	LAP3	4	17600083	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	13357973	17600083	173554193	216	3320											
MED28	80306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	17621579	17621579	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caatggcaccgatcaggaagAaattcgaaccggtaagcatt	15	7	10	9	3	1	1	1	0	0	1	2	4	1	2	2	3	2	3	2	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025205	exon2	c.A215G	p.E72G	AGGAAGAAATTCG	.	76	7	83	0	.	.	G	17621579	A	G	17621579	3	3	24	1	0	0	0	0	1	0	0	0	9496	246	9	4	221	4	MED28	4	17621579	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	21496	17621579	173532697	217	3321											
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	25363483	25363483	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	taatttttaactttctaggtAgattatgataatcatgcact	13	18	5	5	0	2	2	1	1	1	1	2	2	2	2	0	1	2	2	0	1	6	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024936	exon9	c.A1014C	p.V338V	CTAGGTAGATTAT	.	77	33	95	0	.	.	C	25363483	A	C	25363483	2	2	24	1	0	0	0	0	0	0	0	1	17648	407	15	4		4	ZCCHC4	4	25363483	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7741904	25363483	165790793	218	3322											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	46930297	46930297	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tagataaataaacaacccaaTaaaccatgttaaatgcccca	20	8	3	10	0	0	1	0	0	0	1	0	1	0	1	4	0	4	1	4	0	11	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000809	exon9	c.A1610G	p.Y537C	ACCCAATAAACCA	.	103	28	109	0	.	.	C	46930297	T	C	46930297	3	2	24	1	0	0	0	0	1	0	0	0	6198	1406	49	4	58	4	GABRA4	4	46930297	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	21566814	46930297	144223979	219	3323											
CWH43	80157	broad.mit.edu	37	chr4	48988658	48988658	+	Translation_Start_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acttttcctactgaagggaaTaaaggaaaagacctagattg	16	10	9	6	0	0	3	0	1	0	2	1	5	1	5	2	2	1	0	2	2	8	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CWH43	.	.	.	.	AGGGAATAAAGGA	.	26	3	23	0	.	101	G	48988658	T	G	48988658	1	3	24	1	0	0	0	0	0	0	0	0	4096	1421	49	4		4	CWH43	4	48988658	Translation_Start_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2058361	48988658	142165618	220	3324											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56759748	56759748	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atccgccaaatgatgattaaAatatttcgctgcattgagcc	13	12	7	9	2	0	3	0	3	0	0	2	3	1	3	3	0	2	2	3	0	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018261	exon15	c.A1755G	p.K585K	GATTAAAATATTT	.	28	16	61	0	.	.	G	56759748	A	G	56759748	2	3	24	1	0	0	0	0	0	0	0	1	5328	11	1	4		4	EXOC1	4	56759748	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7771090	56759748	134394528	221	3325											
HOPX	84525	broad.mit.edu;bcgsc.ca	37	chr4	57547691	57547691	+	Translation_Start_Site	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcatggaactttctcgtcacTatcttctcgtccctgacctc	6	15	5	15	2	5	1	2	1	3	0	9	2	6	2	2	1	1	0	2	1	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HOPX	.	.	.	.	CGTCACTATCTTC	.	2	2	15	0	.	28	C	57547691	T	C	57547691	1	2	24	1	0	0	0	0	0	0	0	0	7326	1537	53	4		4	HOPX	4	57547691	Translation_Start_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	787943	57547691	133606585	222	3326											
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69093790	69093790	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagtggtccaccagaatcatTctagaagaagaaaagaaaaa	20	7	8	6	0	2	5	1	0	1	5	3	5	3	5	2	1	0	0	2	1	9	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182502	exon10	c.A1090G	p.N364D	AATCATTCTAGAA	.	16	11	71	0	.	.	C	69093790	T	C	69093790	3	2	24	1	0	0	0	0	1	0	0	0	16300	1797	62	4	164	4	TMPRSS11B	4	69093790	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	11546099	69093790	122060486	223	3327											
UGT2B15	7366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	69520862	69520862	+	Frame_Shift_Del	DEL	T	T	-																															tacagtcgagtattggaaccTaaagtatttggcttcttgcc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001076	exon4	c.1045delG	p.G349fs	GGAACCTAAAGTA	.	53	35	146	0	.	.	-	69520862	T	-	69520862	7	5	24	1	0	1	0	1	0	0	0	0	17018	1519	53	0	2177	0	UGT2B15	4	69520862	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	427072	69520862	121633414	224	3328											
GC	2638	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	72629209	72629228	+	In_Frame_Del	DEL	AGCTGGAGTCTCTAGAAAAC	AGCTGGAGTCTCTAGAAAAC	-																															tgagaagtgataaatgtttaAgctggagtctctagaaaaca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGCTGGAGTCTCTAGAAAAC	AGCTGGAGTCTCTAGAAAAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204307	exon7	c.664_675del	p.222_225del	TGTTTAAGCTGGA	.	24	11	71	0	.	.	-	72629228	AGCTGGAGTCTCTAGAAAAC	-	72629209	7	5	24	1	0	1	0	1	0	0	0	0	6322	72	3	0	835	0	GC	4	72629209	In_Frame_Del	DEL	AGCTGGAGTCTCTAGAAAAC	TCGA-W5-AA39-01A-11D-A417-09	3108347	72629209	118525067	225	3329											
ANKRD17	26057	hgsc.bcm.edu	37	chr4	73979583	73979583	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtctatctttggcttGtactattgactccatacaaa	10	15	6	10	0	2	1	0	1	2	0	3	1	3	1	2	1	3	2	2	1	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ANKRD17,NS,lymphoid_neoplasm,0,1	ANKRD17	NM_032217	exon24	c.C4327A	p.Q1443K	TGGCTTGTACTAT	.	27	2	74	0	.	0	T	73979583	G	T	73979583	3	4	24	1	0	0	0	0	1	0	0	0	642	1386	48	3	3528	3	ANKRD17	4	73979583	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1350374	73979583	117174693	226	3330											
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	74274503	74274507	+	Frame_Shift_Del	DEL	GAAGA	GAAGA	-																															gcactgcttttcatgacaatGaagagacatttttgaaaaag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAAGA	GAAGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000477	exon4	c.462_466del	p.154_156del	GACAATGAAGAGA	.	26	13	70	0	.	.	-	74274507	GAAGA	-	74274503	7	5	24	1	0	1	0	1	0	0	0	0	483	1291	45	0	477	0	ALB	4	74274503	Frame_Shift_Del	DEL	GAAGA	TCGA-W5-AA39-01A-11D-A417-09	294920	74274503	116879773	227	3331											
FRAS1	80144	hgsc.bcm.edu	37	chr4	79204119	79204119	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgtccagactgcacatCaggtgggtccatgtctcctc	6	11	11	13	0	2	1	1	0	1	1	6	1	4	1	3	2	2	2	3	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	FRAS1_ENST00000325942,NS,carcinoma,0,3	FRAS1_ENST00000325942	NM_001166133	exon12	c.C1253A	p.S418X	GCACATCAGGTGG	.	19	3	46	0	.	0	A	79204119	C	A	79204119	4	1	24	1	0	0	0	0	0	1	0	0	6076	838	29	3	1299	3	FRAS1	4	79204119	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4929616	79204119	111950157	228	3332											
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79360216	79360216	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttttgctgaccttatcAcggtaaacaattctcagatc	10	15	6	10	1	2	2	2	1	1	1	4	2	2	2	1	1	3	3	1	1	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166133	exon40	c.A5527G	p.T1843A	CTTATCACGGTAA	.	13	7	25	0	.	.	G	79360216	A	G	79360216	3	3	24	1	0	0	0	0	1	0	0	0	6076	159	6	4	5685	4	FRAS1	4	79360216	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	156097	79360216	111794060	229	3333											
TMEM150C	441027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83411279	83411279	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaattccaactctccgtcctTcattcttgatgttgaccttg	7	16	6	12	1	3	2	1	2	2	0	6	3	5	2	4	0	1	1	4	0	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080506	exon7	c.A476G	p.E159G	CGTCCTTCATTCT	.	25	22	56	0	.	.	C	83411279	T	C	83411279	3	2	24	1	0	0	0	0	1	0	0	0	16129	1783	62	4	281	4	TMEM150C	4	83411279	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4051063	83411279	107742997	230	3334											
HPSE	10855	hgsc.bcm.edu;bcgsc.ca	37	chr4	84222115	84222115	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acaaggaaaattacttacttGgaaagtaatccatgaggtcc	16	10	8	7	0	0	1	0	1	0	0	2	3	2	3	2	3	2	1	2	3	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098540	exon11	c.C1470A	p.S490S	TTACTTGGAAAGT	.	56	4	144	0	.	.	T	84222115	G	T	84222115	2	4	24	1	0	0	0	0	0	0	0	1	7385	1335	47	3		3	HPSE	4	84222115	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	810836	84222115	106932161	231	3335											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	85687060	85687060	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacttgatgagaatagactgAttacttagtaggacaacaag	17	10	9	5	0	0	4	0	3	0	2	0	6	0	5	0	1	3	1	0	1	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014991	exon32	c.T5091G	p.N1697K	AGACTGATTACTT	.	22	16	51	0	.	.	C	85687060	A	C	85687060	3	2	24	1	0	0	0	0	1	0	0	0	17330	330	12	4	5637	4	WDFY3	4	85687060	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1464945	85687060	105467216	232	3336											
ADH6	130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	100130084	100130084	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacaggtagaacctggagtcAcctaaacacatacaggcaga	16	5	9	11	0	1	2	1	0	0	2	1	3	1	3	2	3	3	2	2	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000672	exon6	c.T569C	p.V190A	GGAGTCACCTAAA	.	9	6	28	0	.	.	G	100130084	A	G	100130084	3	3	24	1	0	0	0	0	1	0	0	0	311	173	6	4	578	4	ADH6	4	100130084	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	14443024	100130084	91024192	233	3337											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123168345	123168360	+	Frame_Shift_Del	DEL	AACCTGGTAGAACATC	AACCTGGTAGAACATC	-																															agagacttcaaacaatgcagAacctggtagaacatcaaatt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AACCTGGTAGAACATC	AACCTGGTAGAACATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015312	exon33	c.5344_5359del	p.1782_1787del	ATGCAGAACCTGG	.	34	16	161	0	.	.	-	123168360	AACCTGGTAGAACATC	-	123168345	7	5	24	1	0	1	0	1	0	0	0	0	8250	246	9	0	5475	0	KIAA1109	4	123168345	Frame_Shift_Del	DEL	AACCTGGTAGAACATC	TCGA-W5-AA39-01A-11D-A417-09	23038261	123168345	67985931	234	3338											
SLC10A7	84068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	147363937	147363937	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	taaactatgtttacttaccaAaaaacttccaaaggctgaat	17	12	4	8	0	0	1	0	1	0	0	1	1	1	1	2	1	4	2	2	1	10	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032128	exon5	c.T433G	p.L145V	TTACCAAAAAACT	.	69	54	235	0	.	.	C	147363937	A	C	147363937	3	2	24	1	0	0	0	0	1	0	0	0	14434	11	1	4	666	4	SLC10A7	4	147363937	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	24195592	147363937	43790339	235	3339											
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	155463385	155463385	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taacaaaccactgatttccaGgttccacagcaatacatcga	15	9	5	12	1	0	1	0	1	0	0	3	2	2	1	3	1	4	2	3	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002669	exon8	c.C641T	p.P214L	TTTCCAGGTTCCA	.	9	7	46	0	.	.	A	155463385	G	A	155463385	3	1	24	1	0	0	0	0	1	0	0	0	12154	1000	35	3	935	3	PLRG1	4	155463385	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	8099448	155463385	35690891	236	3340											
TDO2	6999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	156831267	156831267	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cttcagaacatgagagtcccTtataacagaagacattatcg	15	10	7	9	1	1	4	1	1	0	4	3	5	2	4	1	0	2	0	1	0	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005651	exon6	c.T522G	p.P174P	AGTCCCTTATAAC	.	30	24	105	0	.	.	G	156831267	T	G	156831267	2	3	24	1	0	0	0	0	0	0	0	1	15786	1596	56	4		4	TDO2	4	156831267	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1367882	156831267	34323009	237	3341											
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	160262761	160262761	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagaaactctttgttcagaTgaagatgctcaggagttgtt	12	13	10	6	0	3	4	2	1	1	3	3	5	3	5	0	1	2	4	0	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014247	exon14	c.T2097G	p.D699E	TTCAGATGAAGAT	.	15	9	39	0	.	.	G	160262761	T	G	160262761	3	3	24	1	0	0	0	0	1	0	0	0	13096	1461	51	4	2151	4	RAPGEF2	4	160262761	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3431494	160262761	30891515	238	3342											
PALLD	23022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169824935	169824935	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtttaaagatgggaagcagAtctctccaaagagtgatcac	14	9	11	7	0	2	4	1	1	1	3	4	5	3	5	1	2	1	2	1	2	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166108	exon15	c.A2500G	p.I834V	AAGCAGATCTCTC	.	28	19	64	0	.	.	G	169824935	A	G	169824935	3	3	24	1	0	0	0	0	1	0	0	0	11454	333	12	4	3061	4	PALLD	4	169824935	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	9562174	169824935	21329341	239	3343											
STOX2	56977	bcgsc.ca	37	chr4	184931986	184931986	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagggccgggtgggggcccCgctgcttcgggaggagtggc	5	5	21	10	3	0	0	0	0	0	0	1	2	0	2	3	7	1	2	3	7	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STOX2	NM_020225	exon3	c.C1995T	p.P665P	GGGCCCCGCTGCT	.	18	3	59	0	.	142	T	184931986	T	T	184931986	2	4	24	1	0	0	0	0	0	0	0	1	15376	639	23	1		1	STOX2	4	184931986	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	15107051	184931986	6222290	240	3344											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1093708	1093730	+	Frame_Shift_Del	DEL	GTTGGTGTAGTTGGCCAGCTTGT	GTTGGTGTAGTTGGCCAGCTTGT	-																															tccaccacgccctggctcagGttggtgtagttggccagctt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTTGGTGTAGTTGGCCAGCTTGT	GTTGGTGTAGTTGGCCAGCTTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006598	exon3	c.261_283del	p.87_95del	GCTCAGGTTGGTG	.	26	10	56	0	.	.	-	1093730	GTTGGTGTAGTTGGCCAGCTTGT	-	1093708	7	5	24	1	0	1	0	1	0	0	0	0	14443	1252	44	0	3057	0	SLC12A7	5	1093708	Frame_Shift_Del	DEL	GTTGGTGTAGTTGGCCAGCTTGT	TCGA-W5-AA39-01A-11D-A417-09		1093708	179821552	241	3345											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	10402698	10402698	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttccctctcatttgtggttgGtggctggatatctgttcctt	3	19	10	9	0	2	0	1	0	2	0	5	1	4	1	2	4	0	3	2	4	1	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005885	exon14	c.G1176A	p.W392X	TGGTTGGTGGCTG	.	121	18	93	0	.	.	A	10402698	G	A	10402698	4	1	24	1	0	0	0	0	0	1	0	0	9355	1270	44	3	1230	3	MARCH6	5	10402698	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	9308990	10402698	170512562	242	3346											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	10433774	10433774	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acaaggctcatctccaccacCtccacagtcatcccaagaat	13	7	4	17	0	3	1	2	0	1	1	6	1	5	1	5	1	0	1	5	1	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005885	exon26	c.C2711T	p.P904L	CACCACCTCCACA	.	114	87	79	0	.	.	T	10433774	C	T	10433774	3	4	24	1	0	0	0	0	1	0	0	0	9355	681	24	3	2813	3	MARCH6	5	10433774	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	31076	10433774	170481486	243	3347											
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	23527639	23527654	+	Frame_Shift_Del	DEL	CAATAAGTCACACCTC	CAATAAGTCACACCTC	-																															gagtgtgggcggggctttagCaataagtcacacctcctcag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAATAAGTCACACCTC	CAATAAGTCACACCTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020227	exon11	c.2441_2456del	p.814_819del	CTTTAGCAATAAG	.	69	16	95	0	.	.	-	23527654	CAATAAGTCACACCTC	-	23527639	7	5	24	1	0	1	0	1	0	0	0	0	12515	709	25	0	2480	0	PRDM9	5	23527639	Frame_Shift_Del	DEL	CAATAAGTCACACCTC	TCGA-W5-AA39-01A-11D-A417-09	13093865	23527639	157387621	244	3348											
PRDM9	56979	bcgsc.ca	37	chr5	23527721	23527727	+	Frame_Shift_Del	DEL	CGCAATA	-	-																															gggagtgtgggcggggctttCgcaataagtcacacctcctc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CGCAATA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PRDM9,brain,primitive_neuroectodermal_tumour-medulloblastoma,-1,1	PRDM9	NM_020227	exon11	c.2524_2530del	p.842_844del	GGCTTTCGCAATA	.	81	6	74	0	.	344	-	23527727	-	-	23527721	7	5	24	1	0	1	0	1	0	0	0	0	12515	884	31	0	2562	0	PRDM9	5	23527721	Frame_Shift_Del	DEL	CGCAATA	TCGA-W5-AA39-01A-11D-A417-09	82	23527721	157387539	245	3349	22	2									
PRDM9	56979	bcgsc.ca	37	chr5	23527730	23527738	+	In_Frame_Del	DEL	TCACACCTC	-	-																															ggcggggctttcgcaataagTcacacctcctcagacaccag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TCACACCTC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PRDM9	NM_020227	exon11	c.2533_2541del	p.845_847del	AATAAGTCACACC	.	77	6	79	0	.	344	-	23527738	-	-	23527730	7	5	24	1	0	1	0	1	0	0	0	0	12515	1667	58	0	2571	0	PRDM9	5	23527730	In_Frame_Del	DEL	TCACACCTC	TCGA-W5-AA39-01A-11D-A417-09	9	23527730	157387530	246	3350	22	2									
PDZD2	23037	hgsc.bcm.edu	37	chr5	31983419	31983419	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggtgaccgaactgcgaaaaAggggaaacgaaccagaaagt	17	3	14	7	3	0	2	0	1	0	1	0	6	0	3	2	3	4	0	2	3	6	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178140	exon2	c.A635G	p.K212R	CGAAAAAGGGGAA	.	100	4	82	0	.	.	G	31983419	A	G	31983419	3	3	24	1	0	0	0	0	1	0	0	0	11748	72	3	4	641	4	PDZD2	5	31983419	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8455689	31983419	148931841	247	3351											
SKP2	6502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	36181926	36181926	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcctttccagtgaactTggagaaattcccacactaaa	12	13	5	11	0	1	2	0	1	1	1	4	3	4	2	3	1	1	0	3	1	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005983	exon10	c.T1068G	p.L356L	TGAACTTGGAGAA	.	95	18	72	0	.	.	G	36181926	T	G	36181926	2	3	24	1	0	0	0	0	0	0	0	1	14417	1799	63	4		4	SKP2	5	36181926	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4198507	36181926	144733334	248	3352											
FST	10468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	52779381	52779381	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaaaaaatgccgaatgAacaagaagaacaaaccccgc	19	3	9	10	2	0	3	0	1	0	2	0	5	0	4	3	1	4	0	3	1	9	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013409	exon3	c.A325G	p.N109D	CGAATGAACAAGA	.	79	22	84	0	.	.	G	52779381	A	G	52779381	3	3	24	1	0	0	0	0	1	0	0	0	6111	246	9	4	335	4	FST	5	52779381	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	16597455	52779381	128135879	249	3353											
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	54442593	54442593	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttgctgccaccttgtggtaAtggggctactcgcaacagga	8	11	12	10	1	0	0	0	0	0	0	1	1	0	1	2	4	4	4	2	4	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001170402	exon3	c.T218G	p.I73S	GTGGTAATGGGGC	.	65	23	89	0	.	.	C	54442593	A	C	54442593	3	2	24	1	0	0	0	0	1	0	0	0	3082	101	4	4	1381	4	CDC20B	5	54442593	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1663212	54442593	126472667	250	3354											
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	54763893	54763893	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaaggttccaatggctttgtAaatagtggctatgtagttat	12	15	10	4	0	0	0	0	0	0	0	1	0	1	0	1	3	0	6	1	3	8	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_176895	exon3	c.T298C	p.Y100H	CTTTGTAAATAGT	.	48	28	55	0	.	.	G	54763893	A	G	54763893	3	3	24	1	0	0	0	0	1	0	0	0	12335	362	13	4	575	4	PPAP2A	5	54763893	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	321300	54763893	126151367	251	3355											
IL6ST	3572	hgsc.bcm.edu	37	chr5	55250698	55250698	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccagtctgtgatacagggtgCtttatctgataacacacacc	11	11	8	11	0	2	2	0	2	2	0	2	2	2	2	2	1	3	1	2	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002184	exon11	c.G1390A	p.A464T	AGGGTGCTTTATC	.	80	4	77	0	.	.	T	55250698	C	T	55250698	3	4	24	1	0	0	0	0	1	0	0	0	7747	797	28	3	1394	3	IL6ST	5	55250698	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	486805	55250698	125664562	252	3356											
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	61747688	61747688	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttcgacagcacagagcattActtaccttctatcatgttac	11	13	5	12	1	2	1	1	0	1	1	3	2	2	1	1	0	5	3	1	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001134779	exon5	c.A564C	p.L188F	AGCATTACTTACC	.	66	18	73	0	.	.	C	61747688	A	C	61747688	3	2	24	1	0	0	0	0	1	0	0	0	7837	388	14	4	582	4	IPO11	5	61747688	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6496990	61747688	119167572	253	3357											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	67522582	67522582	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	aagatattgacttgcacttgGgtgacatattgactgtgaat	12	14	10	5	0	0	5	0	4	0	1	0	5	0	5	0	1	1	1	0	1	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181523	exon2	c.G79T	p.G27C	CACTTGGGTGACA	.	112	67	148	0	.	.	T	67522582	G	T	67522582	3	4	24	1	0	0	0	0	1	0	0	0	11966	1232	43	3	81	3	PIK3R1	5	67522582	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5774894	67522582	113392678	254	3358											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	67569785	67569785	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggtctggaatgttcaactcTatacagaacacagagctcca	14	9	8	10	0	3	2	1	0	2	2	4	3	4	3	1	2	4	2	1	2	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181523	exon4	c.T446C	p.L149P	CAACTCTATACAG	.	29	9	42	0	.	.	C	67569785	T	C	67569785	3	2	24	1	0	0	0	0	1	0	0	0	11966	1522	53	4	456	4	PIK3R1	5	67569785	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	47203	67569785	113345475	255	3359											
RAD17	5884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	68680714	68680714	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagtataacaagttacaaaTgcttggagatgatctgagaa	18	10	9	4	0	1	3	0	2	1	2	1	5	1	3	0	1	3	3	0	1	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133339	exon5	c.T632A	p.M211K	TACAAATGCTTGG	.	61	33	74	0	.	.	A	68680714	T	A	68680714	3	1	24	1	0	0	0	0	1	0	0	0	13031	1464	51	5	663	5	RAD17	5	68680714	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1110929	68680714	112234546	256	3360											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72378651	72378651	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaaaatcagaaaatggAggtaagtgtgtgtgtccttt	14	12	11	4	0	2	2	2	0	0	2	3	3	3	3	1	2	0	1	1	2	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138782	exon24	c.A2244T	p.G748G	AAATGGAGGTAAG	.	105	63	140	0	.	.	T	72378651	A	T	72378651	2	4	24	1	0	0	0	0	0	0	0	1	5821	318	11	5		5	FCHO2	5	72378651	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3697937	72378651	108536609	257	3361											
GPR98	84059	bcgsc.ca	37	chr5	89948370	89948370	+	Silent	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttttatttcctaaaacttgtAaacatttcaggtactgtgtt	11	19	5	6	0	1	0	1	0	0	0	2	0	2	0	1	1	3	3	1	1	6	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,NS,carcinoma,+2,1	GPR98	NM_032119	exon19	c.A3624G	p.V1208V	ACTTGTAAACATT	.	38	13	42	0	.	605	G	89948370	G	G	89948370	2	3	24	1	0	0	0	0	0	0	0	1	6762	349	13	4		4	GPR98	5	89948370	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	17569719	89948370	90966890	258	3362											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90079724	90079724	+	Silent	SNP	A	A	G																															gcggtccttgggcgccacctAgtgagcagaatcataatagc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032119	exon67	c.A13503G	p.L4501L	CCACCTAGTGAGC	.	62	37	91	0	.	.	G	90079724	A	G	90079724	2	3	24	1	0	0	0	0	0	0	0	1	6762	407	15	4		4	GPR98	5	90079724	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	131354	90079724	90835536	259	3363	23	4									
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90079728	90079728	+	Missense_Mutation	SNP	A	A	G																															tccttgggcgccacctagtgAgcagaatcataatagctaag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,NS,carcinoma,0,2	GPR98	NM_032119	exon67	c.A13507G	p.S4503G	CTAGTGAGCAGAA	.	66	58	92	0	.	0	G	90079728	A	G	90079728	3	3	24	1	0	0	0	0	1	0	0	0	6762	304	11	4	13773	4	GPR98	5	90079728	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4	90079728	90835532	260	3364	23	4									
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90079731	90079731	+	Missense_Mutation	SNP	A	A	G																															ttgggcgccacctagtgagcAgaatcataatagctaagagt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,caecum,carcinoma,0,1	GPR98	NM_032119	exon67	c.A13510G	p.R4504G	GTGAGCAGAATCA	.	66	58	89	0	.	0	G	90079731	A	G	90079731	3	3	24	1	0	0	0	0	1	0	0	0	6762	180	7	4	13776	4	GPR98	5	90079731	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3	90079731	90835529	261	3365	23	4									
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	90079733	90079733	+	Missense_Mutation	SNP	A	A	C																															gggcgccacctagtgagcagAatcataatagctaagagtga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032119	exon67	c.A13512C	p.R4504S	GAGCAGAATCATA	.	66	21	91	0	.	.	C	90079733	A	C	90079733	3	2	24	1	0	0	0	0	1	0	0	0	6762	243	9	4	13778	4	GPR98	5	90079733	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2	90079733	90835527	262	3366	23	4									
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	95236433	95236433	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtctctactagaacatacAggagattctgaacggctggt	11	10	11	9	2	2	3	0	1	2	2	3	4	2	3	0	3	4	1	0	3	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012081	exon7	c.T918C	p.P306P	ACATACAGGAGAT	.	66	20	57	0	.	.	G	95236433	A	G	95236433	2	3	24	1	0	0	0	0	0	0	0	1	5091	175	7	4		4	ELL2	5	95236433	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5156700	95236433	85678827	263	3367											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	98240741	98240741	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctactgcttccatcactacTgcttccagaactcgaaccag	10	10	6	15	1	1	1	1	0	0	1	4	2	3	1	3	0	6	3	3	0	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270	exon2	c.A115G	p.S39G	CACTACTGCTTCC	.	23	10	40	0	.	.	C	98240741	T	C	98240741	3	2	24	1	0	0	0	0	1	0	0	0	3345	1580	55	4	5153	4	CHD1	5	98240741	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3004308	98240741	82674519	264	3368											
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	108714025	108714025	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcatttggttattttctgttTccctttgtgtaataactctt	6	23	5	7	0	3	0	1	0	2	0	4	0	4	0	1	1	1	3	1	1	3	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014819	exon4	c.A1163C	p.E388A	TCTGTTTCCCTTT	.	76	20	80	0	.	.	G	108714025	T	G	108714025	3	3	24	1	0	0	0	0	1	0	0	0	12010	1783	62	4	991	4	PJA2	5	108714025	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	10473284	108714025	72201235	265	3369											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	111594968	111594968	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaaattgagtctccttgaaGtgaacctttgtaatccgagg	11	13	9	8	1	2	3	1	3	1	0	4	4	3	3	3	1	1	1	3	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022140	exon9	c.C753T	p.H251H	CTTGAAGTGAACC	.	73	20	77	0	.	.	A	111594968	G	A	111594968	2	1	24	1	0	0	0	0	0	0	0	1	5183	1020	36	3		3	EPB41L4A	5	111594968	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2880943	111594968	69320292	266	3370											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118486011	118486011	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctggccacttacttcattctAgtttaccaggactcagccgg	8	12	8	13	1	3	0	2	0	1	0	3	1	3	1	3	3	3	1	3	3	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005509	exon18	c.A4489C	p.S1497R	CATTCTAGTTTAC	.	45	21	51	0	.	.	C	118486011	A	C	118486011	3	2	24	1	0	0	0	0	1	0	0	0	4622	420	15	4	4559	4	DMXL1	5	118486011	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6891043	118486011	62429249	267	3371											
P4HA2	8974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	131530672	131530672	+	Frame_Shift_Del	DEL	C	C	-																															catgtcttgttcggtagtcaCcttccccgctccgcaagagg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004199	exon14	c.1485delT	p.G495fs	TAGTCACCTTCCC	.	45	26	48	0	.	.	-	131530672	C	-	131530672	7	5	24	1	0	1	0	1	0	0	0	0	11404	507	18	0	131	0	P4HA2	5	131530672	Frame_Shift_Del	DEL	C	TCGA-W5-AA39-01A-11D-A417-09	13044661	131530672	49384588	268	3372											
RAD50	10111	broad.mit.edu;bcgsc.ca	37	chr5	131931434	131931434	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgctccagataaactcaaGtcaacagaatcagagctaaa	17	8	6	10	0	3	3	3	0	0	3	4	3	4	3	1	0	4	2	1	0	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RAD50	NM_005732	exon13	c.G2139A	p.K713K	ACTCAAGTCAACA	.	24	13	24	0	.	246	A	131931434	G	A	131931434	2	1	24	1	0	0	0	0	0	0	0	1	13036	1020	36	3		3	RAD50	5	131931434	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	400762	131931434	48983826	269	3373											
KIF3A	11127	hgsc.bcm.edu	37	chr5	132038286	132038286	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcagcatagtccaaactttCtttaacttcttggtctttcc	9	17	4	11	0	4	0	1	0	3	0	6	0	6	0	2	1	3	1	2	1	3	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KIF3A,colon,carcinoma,0,1	KIF3A	NM_007054	exon12	c.G1641T	p.K547N	AACTTTCTTTAAC	.	53	3	57	0	.	0	A	132038286	C	A	132038286	3	1	24	1	0	0	0	0	1	0	0	0	8342	912	32	3	482	3	KIF3A	5	132038286	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	106852	132038286	48876974	270	3374											
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132561381	132561381	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctgtttggacatctgagtTgagacatccacgccgttttt	8	14	10	9	2	1	2	0	2	1	1	2	4	2	3	2	1	1	4	2	1	0	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015082	exon9	c.A1146C	p.S382S	CTGAGTTGAGACA	.	63	33	90	0	.	.	G	132561381	T	G	132561381	2	3	24	1	0	0	0	0	0	0	0	1	6114	1799	63	4		4	FSTL4	5	132561381	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	523095	132561381	48353879	271	3375											
PHF15	23338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	133887780	133887780	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atcacagccatgaagatcccGgactcataccagctcagccc	12	6	7	16	1	3	2	3	1	0	1	4	3	4	3	4	1	4	1	4	1	2	1	rs12163993	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015288	exon4	c.G192T	p.P64P	GATCCCGGACTCA	.	39	11	40	0	.	.	T	133887780	G	T	133887780	2	4	24	1	0	0	0	0	0	0	0	1	11874	1103	39	2		2	PHF15	5	133887780	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1326399	133887780	47027480	272	3376											
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138700372	138700372	+	Missense_Mutation	SNP	A	A	C																															ctcccacaaactatggaccaAatccaagaccagtttaatga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033112	exon3	c.A258C	p.Q86H	GGACCAAATCCAA	.	48	16	60	0	.	.	C	138700372	A	C	138700372	3	2	24	1	0	0	0	0	1	0	0	0	11444	11	1	4	264	4	PAIP2	5	138700372	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4812592	138700372	42214888	273	3377	24	2									
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138700374	138700374	+	Missense_Mutation	SNP	T	T	G																															cccacaaactatggaccaaaTccaagaccagtttaatgacc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033112	exon3	c.T260G	p.I87S	ACCAAATCCAAGA	.	49	17	60	0	.	.	G	138700374	T	G	138700374	3	3	24	1	0	0	0	0	1	0	0	0	11444	1435	50	4	266	4	PAIP2	5	138700374	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2	138700374	42214886	274	3378	24	2									
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	139938329	139938329	+	Frame_Shift_Del	DEL	C	C	-																															atggagctggtccgcttgagCcgcaggcgggcacgggcctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1324delC	p.L442fs	CTTGAGCCGCAGG	.	33	12	34	0	.	.	-	139938329	C	-	139938329	7	5	24	1	0	1	0	1	0	0	0	0	758	726	26	0	162	0	APBB3	5	139938329	Frame_Shift_Del	DEL	C	TCGA-W5-AA39-01A-11D-A417-09	1237955	139938329	40976931	275	3379	25	3									
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	139938333	139938335	+	In_Frame_Del	DEL	AGG	AGG	-																															agctggtccgcttgagccgcAggcgggcacgggcctgggca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1318_1320del	p.440_440del	AGCCGCAGGCGGG	.	25	12	34	0	.	.	-	139938335	AGG	-	139938333	7	5	24	1	0	1	0	1	0	0	0	0	758	188	7	0	166	0	APBB3	5	139938333	In_Frame_Del	DEL	AGG	TCGA-W5-AA39-01A-11D-A417-09	4	139938333	40976927	276	3380	25	3									
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	139938337	139938338	+	Frame_Shift_Del	DEL	GG	GG	-																															ggtccgcttgagccgcaggcGggcacgggcctgggcacccc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GG	GG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1315_1316del	p.439_439del	GCAGGCGGGCACG	.	25	12	34	0	.	.	-	139938338	GG	-	139938337	7	5	24	1	0	1	0	1	0	0	0	0	758	1116	39	0	170	0	APBB3	5	139938337	Frame_Shift_Del	DEL	GG	TCGA-W5-AA39-01A-11D-A417-09	4	139938337	40976923	277	3381	25	3									
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139939978	139939978	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcactggaagctctgacGgcccaggtcagcgatgaggc	8	6	15	12	3	2	2	1	2	1	0	2	4	2	3	1	4	3	2	1	4	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon11	c.C1165G	p.R389G	TCTGACGGCCCAG	.	40	5	67	0	.	.	C	139939978	G	C	139939978	3	2	24	1	0	0	0	0	1	0	0	0	758	1116	39	5	324	5	APBB3	5	139939978	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1641	139939978	40975282	278	3382											
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140554443	140554443	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctacctgcggctcccggaggCggccccggaccaggccaact	6	4	13	18	4	0	0	0	0	0	0	1	2	1	2	6	6	3	1	6	6	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018940	exon1	c.C2027T	p.A676V	CGGAGGCGGCCCC	.	146	18	201	0	.	.	T	140554443	C	T	140554443	3	4	24	1	0	0	0	0	1	0	0	0	11594	768	27	1	2029	1	PCDHB7	5	140554443	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	614465	140554443	40360817	279	3383											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140724331	140724331	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caacccaccaatgtttactcAgcctgagtaccgtgtgagtg	10	10	9	12	1	1	2	1	2	0	0	1	2	1	2	4	0	4	2	4	0	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032011	exon1	c.A731T	p.Q244L	TTACTCAGCCTGA	.	51	11	60	0	.	.	T	140724331	A	T	140724331	3	4	24	1	0	0	0	0	1	0	0	0	11602	188	7	5	733	5	PCDHGA3	5	140724331	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	169888	140724331	40190929	280	3384											
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140730180	140730180	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaatgttttccacgtggttgTtgtaatccaagatattaatg	11	16	9	5	1	0	1	0	0	0	1	2	2	2	1	2	1	0	4	2	1	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018922	exon1	c.T353C	p.V118A	TGGTTGTTGTAAT	.	61	16	63	0	.	.	C	140730180	T	C	140730180	3	2	24	1	0	0	0	0	1	0	0	0	11609	1725	60	4	355	4	PCDHGB1	5	140730180	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5849	140730180	40185080	281	3385											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140736182	140736182	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccccagaggagcctccatctTatctatgactgctcaagacc	10	9	7	15	0	3	3	1	1	2	2	4	4	4	4	5	1	2	1	5	1	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018917	exon1	c.T1415C	p.L472S	CCATCTTATCTAT	.	24	14	46	0	.	.	C	140736182	T	C	140736182	3	2	24	1	0	0	0	0	1	0	0	0	11603	1764	61	4	1417	4	PCDHGA4	5	140736182	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6002	140736182	40179078	282	3386											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140755037	140755037	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cctactcagtctatgtccttGaaaacaaccccaggggtgcc	10	9	8	14	0	2	1	1	1	1	0	3	1	3	1	5	2	4	0	5	2	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCDHGA6_ENST00000517434,NS,carcinoma,0,1	PCDHGA6_ENST00000517434	NM_018919	exon1	c.G1387A	p.E463K	GTCCTTGAAAACA	.	30	13	21	0	.	0	A	140755037	G	A	140755037	3	1	24	1	0	0	0	0	1	0	0	0	11605	1291	45	3	1389	3	PCDHGA6	5	140755037	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	18855	140755037	40160223	283	3387											
SPRY4	81848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141694180	141694180	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atgcacactccttgcatttaCacttcccacaggcctcgcac	9	10	5	17	1	0	0	0	0	0	0	3	0	2	0	3	1	3	3	3	1	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030964	exon3	c.G563T	p.C188F	CATTTACACTTCC	.	40	11	30	0	.	.	A	141694180	C	A	141694180	3	1	24	1	0	0	0	0	1	0	0	0	15164	478	17	3	409	3	SPRY4	5	141694180	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	939143	141694180	39221080	284	3388											
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147498034	147498034	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtatcgggaacaaatgaaaaAtggaagactcagctgtactc	16	8	10	7	1	1	2	1	1	0	1	3	4	1	4	0	2	3	3	0	2	7	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001127699	exon23	c.A2147T	p.N716I	TGAAAAATGGAAG	.	70	12	79	0	.	.	T	147498034	A	T	147498034	3	4	24	1	0	0	0	0	1	0	0	0	15118	101	4	5	2237	5	SPINK5	5	147498034	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5803854	147498034	33417226	285	3389											
SAP30L	79685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	153835544	153835544	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatggtgaagagtaacaagAgtagactggaccagaaatcg	17	6	12	6	1	0	5	0	1	0	4	1	6	0	6	1	2	1	2	1	2	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024632	exon4	c.A508T	p.S170C	AACAAGAGTAGAC	.	61	14	56	0	.	.	T	153835544	A	T	153835544	3	4	24	1	0	0	0	0	1	0	0	0	13888	304	11	5	522	5	SAP30L	5	153835544	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6337510	153835544	27079716	286	3390											
IL12B	3593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	158749517	158749517	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tagaaaggtcttatttttggGttctggatttgaaaaaaaca	14	15	9	3	0	2	2	0	1	2	1	2	3	2	3	0	3	1	1	0	3	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002187	exon4	c.C367G	p.P123A	TTTTGGGTTCTGG	.	65	29	60	0	.	.	C	158749517	G	C	158749517	3	2	24	1	0	0	0	0	1	0	0	0	7669	1261	44	5	635	5	IL12B	5	158749517	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4913973	158749517	22165743	287	3391											
HRH2	3274	hgsc.bcm.edu	37	chr5	175111128	175111128	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgaacagagacttccgcaccGggtaccaacagctcttctgc	10	8	9	14	2	2	2	0	1	2	1	3	3	3	2	3	1	5	3	3	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	HRH2_ENST00000377291,middle_lobe,carcinoma,0,3	HRH2_ENST00000377291	NM_001131055	exon2	c.G892T	p.G298W	CGCACCGGGTACC	.	36	2	28	0	.	0	T	175111128	G	T	175111128	3	4	24	1	0	0	0	0	1	0	0	0	7397	1116	39	2	894	2	HRH2	5	175111128	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	16361611	175111128	5804132	288	3392											
UIMC1	51720	hgsc.bcm.edu	37	chr5	176396234	176396234	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcctctctttcctcagcctcGtttccctgactgatatgtga	5	16	6	14	1	2	3	1	3	1	0	7	3	5	3	4	0	1	1	4	0	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	UIMC1,NS,carcinoma,0,1	UIMC1	NM_016290	exon6	c.C522T	p.N174N	AGCCTCGTTTCCC	.	71	3	81	0	.	0	A	176396234	G	A	176396234	2	1	24	1	0	0	0	0	0	0	0	1	17031	1136	40	1		1	UIMC1	5	176396234	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1285106	176396234	4519026	289	3393											
ZNF354A	6940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178154001	178154001	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agagggaaaatttccttaccCagtgagaccaggttcctata	13	10	9	9	0	0	2	0	1	0	2	2	4	2	3	4	2	1	1	4	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005649	exon3	c.G159C	p.L53L	CTTACCCAGTGAG	.	97	56	138	0	.	.	G	178154001	C	G	178154001	2	3	24	1	0	0	0	0	0	0	0	1	17921	608	21	5		5	ZNF354A	5	178154001	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1757767	178154001	2761259	290	3394											
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178359047	178359047	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gagaaaaaccctatgaatgtAatgaatgtggaaaagccttc	17	9	9	6	0	0	3	0	2	0	1	1	5	0	4	2	1	2	1	2	1	8	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030613	exon5	c.A733C	p.N245H	GAATGTAATGAAT	.	69	41	68	0	.	.	C	178359047	A	C	178359047	3	2	24	1	0	0	0	0	1	0	0	0	17699	362	13	4	735	4	ZFP2	5	178359047	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	205046	178359047	2556213	291	3395											
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178506225	178506225	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccttctttctcatcagagAattcatactggagagaaacc	12	12	6	11	0	4	2	3	0	2	2	6	5	5	3	2	1	2	0	2	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014594	exon5	c.A792C	p.R264S	TCAGAGAATTCAT	.	55	12	71	0	.	.	C	178506225	A	C	178506225	3	2	24	1	0	0	0	0	1	0	0	0	17923	243	9	4	806	4	ZNF354C	5	178506225	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	147178	178506225	2409035	292	3396											
BTNL9	153579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180477173	180477173	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agatccagtggctggtacccCaagcctaaggttcagtggag	10	8	13	10	0	1	1	1	0	0	1	2	2	2	2	4	4	2	3	4	4	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152547	exon4	c.C540G	p.P180P	GTACCCCAAGCCT	.	38	21	37	0	.	.	G	180477173	C	G	180477173	2	3	24	1	0	0	0	0	0	0	0	1	1571	581	21	5		5	BTNL9	5	180477173	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1970948	180477173	438087	293	3397											
BTNL9	153579	hgsc.bcm.edu;broad.mit.edu	37	chr5	180480244	180480244	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtggaagagcgcgttcgtcGcgaccctgccgctgctgttg	4	9	15	13	7	0	1	0	0	0	1	2	3	0	2	2	1	3	4	2	1	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152547	exon5	c.G781C	p.A261P	TTCGTCGCGACCC	.	8	4	8	0	.	.	C	180480244	G	C	180480244	3	2	24	1	0	0	0	0	1	0	0	0	1571	1087	38	5	795	5	BTNL9	5	180480244	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3071	180480244	435016	294	3398											
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7249158	7249158	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggcctgcccacccaatccTggccacagctgatggcgcct	7	6	11	17	1	0	1	0	1	0	0	1	2	1	1	6	3	2	1	6	3	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001003699	exon13	c.T5186G	p.L1729R	CAATCCTGGCCAC	.	28	14	45	0	.	.	G	7249158	T	G	7249158	3	3	24	1	0	0	0	0	1	0	0	0	13731	1580	55	4	5224	4	RREB1	6	7249158	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		7249158	163865909	295	3399											
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7880449	7880449	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcaccttatgaaccccgagtAtgtccccaaaccgtgctgtg	9	10	8	14	2	1	1	1	1	0	0	2	2	2	1	6	0	3	2	6	0	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001718	exon7	c.A1415G	p.Y472C	CCGAGTATGTCCC	.	54	30	72	0	.	.	G	7880449	A	G	7880449	3	3	24	1	0	0	0	0	1	0	0	0	1463	449	16	4	1441	4	BMP6	6	7880449	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	631291	7880449	163234618	296	3400											
GCNT2	2651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	10621588	10621588	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttatcaacattgcaggtgtTcctggctctatgccaaatgc	9	14	8	10	0	2	0	1	0	1	0	3	0	3	0	2	2	4	3	2	2	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145649	exon4	c.T930C	p.V310V	AGGTGTTCCTGGC	.	25	9	44	0	.	.	C	10621588	T	C	10621588	2	2	24	1	0	0	0	0	0	0	0	1	6341	1770	62	4		4	GCNT2	6	10621588	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2741139	10621588	160493479	297	3401											
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25850686	25850686	+	Splice_Site	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagggaaggaaacatactcaCgtctctgatgttaacatggt	14	10	10	7	1	2	1	1	1	1	0	3	3	2	3	0	3	3	1	0	3	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006632	exon8	c.759+1G>A	.	TACTCACGTCTCT	.	40	24	45	0	.	.	T	25850686	C	T	25850686	5	4	24	1	0	0	0	0	0	0	1	0	14473	550	19	1	522	1	SLC17A3	6	25850686	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	15229098	25850686	145264381	298	3402											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27420544	27420544	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaattctttgatggtttataAggttttcactccggctgaag	9	16	10	6	1	2	2	1	2	1	0	3	3	3	2	1	3	0	3	1	3	4	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007149	exon6	c.T794G	p.L265R	TTTATAAGGTTTT	.	55	24	48	0	.	.	C	27420544	A	C	27420544	3	2	24	1	0	0	0	0	1	0	0	0	17809	72	3	4	1465	4	ZNF184	6	27420544	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1569858	27420544	143694523	299	3403											
DOM3Z	1797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	31938791	31938791	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcgttcggtgtctccacttCactcaggtatagtgttccct	6	14	9	12	2	3	0	2	0	1	0	6	0	4	0	2	2	1	3	2	2	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005510	exon3	c.G490T	p.E164X	CCACTTCACTCAG	.	54	28	73	0	.	.	A	31938791	C	A	31938791	4	1	24	1	0	0	0	0	0	1	0	0	4732	835	29	3	720	3	DOM3Z	6	31938791	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4518247	31938791	139176276	300	3404											
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32086802	32086813	+	In_Frame_Del	DEL	CAGTACTGCTTG	CAGTACTGCTTG	-																															cggagctgctggttgtcagcCagtactgcttgcagccgagc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAGTACTGCTTG	CAGTACTGCTTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004381	exon10	c.1073_1084del	p.358_362del	GTCAGCCAGTACT	.	44	19	58	0	.	.	-	32086813	CAGTACTGCTTG	-	32086802	7	5	24	1	0	1	0	1	0	0	0	0	1084	581	21	0	1064	0	ATF6B	6	32086802	In_Frame_Del	DEL	CAGTACTGCTTG	TCGA-W5-AA39-01A-11D-A417-09	148011	32086802	139028265	301	3405											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32166895	32166895	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccactggggagcacagcacaGgccagggaagctggttggca	10	4	16	11	0	0	0	0	0	0	0	0	2	0	2	2	6	3	5	2	6	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004557	exon24	c.C4343T	p.P1448L	AGCACAGGCCAGG	.	25	8	23	0	.	.	A	32166895	G	A	32166895	3	1	24	1	0	0	0	0	1	0	0	0	10598	1000	35	3	1696	3	NOTCH4	6	32166895	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	80093	32166895	138948172	302	3406											
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32820888	32820888	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgagcccaggcagcctagaaGccgacgcacagggtttccag	10	4	13	14	3	0	1	0	0	0	1	1	3	1	1	4	2	3	3	4	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000593	exon1	c.C706T	p.L236F	CTAGAAGCCGACG	.	43	12	50	0	.	.	A	32820888	G	A	32820888	3	1	24	1	0	0	0	0	1	0	0	0	15607	971	34	3	1764	3	TAP1	6	32820888	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	653993	32820888	138294179	303	3407											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33631568	33631568	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggggagaagatcaagtactgCctggtggctgtgcctcatgg	8	9	16	8	0	2	2	2	0	0	2	2	3	2	2	2	5	3	2	2	5	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ITPR3_ENST00000374316,NS,carcinoma,0,2	ITPR3_ENST00000374316	NM_002224	exon11	c.C1059G	p.C353W	GTACTGCCTGGTG	.	43	9	63	0	.	0	G	33631568	C	G	33631568	3	3	24	1	0	0	0	0	1	0	0	0	7966	747	26	5	1101	5	ITPR3	6	33631568	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	810680	33631568	137483499	304	3408											
CDKN1A	1026	hgsc.bcm.edu	37	chr6	36652119	36652192	+	Frame_Shift_Del	DEL	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	-																															ccaagctctaccttcccacgGggccccggcgaggccgggat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000389	exon2	c.240_313del	p.80_105del	CCCACGGGGCCCC	.	35	0	37	0	.	.	-	36652192	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	-	36652119	7	5	24	1	0	1	0	1	0	0	0	0	3180	1232	43	0	243	0	CDKN1A	6	36652119	Frame_Shift_Del	DEL	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	TCGA-W5-AA39-01A-11D-A417-09	3020551	36652119	134462948	305	3409											
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	37441251	37441251	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gactcgtggctgcagggcacTgagattgacatcttcagcta	9	10	12	10	1	2	2	1	2	1	1	3	4	2	2	0	2	2	4	0	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015050	exon17	c.T1695C	p.T565T	GGGCACTGAGATT	.	35	18	23	0	.	.	C	37441251	T	C	37441251	2	2	24	1	0	0	0	0	0	0	0	1	6126	1567	55	4		4	FTSJD2	6	37441251	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	789132	37441251	133673816	306	3410											
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	41751913	41751913	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tccctttgcctggacaccaaCcaagcccccaactggactgg	9	7	8	17	0	0	0	0	0	0	0	1	2	1	2	6	3	4	0	6	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013397	exon4	c.C177G	p.N59K	CACCAACCAAGCC	.	53	27	86	0	.	.	G	41751913	C	G	41751913	3	3	24	1	0	0	0	0	1	0	0	0	12541	506	18	5	183	5	PRICKLE4	6	41751913	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4310662	41751913	129363154	307	3411											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42644579	42644579	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaagaatcagcagttcttgcTttgtataaaacacttcacca	14	12	6	9	0	3	1	2	0	1	1	3	2	3	1	1	0	3	4	1	0	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015255	exon40	c.T4446G	p.A1482A	TCTTGCTTTGTAT	.	50	31	71	0	.	.	G	42644579	T	G	42644579	2	3	24	1	0	0	0	0	0	0	0	1	16963	1596	56	4		4	UBR2	6	42644579	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	892666	42644579	128470488	308	3412											
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43022170	43022170	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccttgccaatgacccgttTgttatgatcaacgttggata	9	14	9	9	2	1	2	1	2	0	0	1	3	1	3	3	1	3	3	3	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015950	exon7	c.A760G	p.K254E	CCCGTTTGTTATG	.	27	5	42	0	.	.	C	43022170	T	C	43022170	3	2	24	1	0	0	0	0	1	0	0	0	9834	1821	63	4	161	4	MRPL2	6	43022170	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	377591	43022170	128092897	309	3413											
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46630146	46630146	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggagggatgatggctggtgtTattggccagtttttagccaa	8	13	15	5	0	0	1	0	1	0	0	0	3	0	3	2	5	1	3	2	5	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204051	exon4	c.T417G	p.V139V	TGGTGTTATTGGC	.	67	15	71	0	.	.	G	46630146	T	G	46630146	2	3	24	1	0	0	0	0	0	0	0	1	14545	1741	61	4		4	SLC25A27	6	46630146	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3607976	46630146	124484921	310	3414											
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49574864	49574864	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcactttttatgctgaccTgtcatcagacctccaacaac	10	13	5	13	0	3	2	3	1	0	1	4	2	4	2	3	0	3	2	3	0	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000324	exon8	c.A1137C	p.T379T	CTGACCTGTCATC	.	39	29	66	0	.	.	G	49574864	T	G	49574864	2	3	24	1	0	0	0	0	0	0	0	1	13365	1594	55	4		4	RHAG	6	49574864	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2944718	49574864	121540203	311	3415											
BMP5	653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	55638874	55638874	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	actggacattctggaggagtCctgatgagagctggatttat	10	12	13	6	0	1	2	0	2	1	1	2	7	2	6	1	4	1	1	1	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021073	exon4	c.G1000T	p.D334Y	AGGAGTCCTGATG	.	84	46	86	0	.	.	A	55638874	C	A	55638874	3	1	24	1	0	0	0	0	1	0	0	0	1462	855	30	3	380	3	BMP5	6	55638874	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	6064010	55638874	115476193	312	3416											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	64416712	64416712	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaacatgccttctgtggcAaaatttgttaccaaagccta	13	12	6	10	0	2	0	1	0	1	0	2	0	2	0	3	1	4	2	3	1	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015153	exon12	c.A3657C	p.A1219A	TGTGGCAAAATTT	.	72	19	94	0	.	.	C	64416712	A	C	64416712	2	2	24	1	0	0	0	0	0	0	0	1	11884	117	5	4		4	PHF3	6	64416712	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8777838	64416712	106698355	313	3417											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	74229629	74229629	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agcagcctccttctcaaattTttcaatggttcttttgtcga	8	17	6	10	1	3	0	2	0	2	0	6	1	4	0	2	1	2	2	2	1	2	6	rs11550839	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001402	exon2	c.A121C	p.K41Q	CAAATTTTTCAAT	.	96	62	130	0	.	.	G	74229629	T	G	74229629	3	3	24	1	0	0	0	0	1	0	0	0	4949	1850	64	4	1295	4	EEF1A1	6	74229629	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9812917	74229629	96885438	314	3418											
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	86235879	86235879	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtagtatcttatcaagaaatTgtgtttccccaccattaggg	11	14	8	8	0	2	1	1	0	1	1	3	1	3	1	3	1	0	3	3	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153816	exon21	c.A2072C	p.Q691P	AGAAATTGTGTTT	.	69	19	57	0	.	.	G	86235879	T	G	86235879	3	3	24	1	0	0	0	0	1	0	0	0	14939	1812	63	4	804	4	SNX14	6	86235879	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	12006250	86235879	84879188	315	3419											
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	86267770	86267770	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggttataatagatggAatatccacctagaaaaattc	15	14	6	6	0	1	2	0	0	1	2	3	3	2	3	2	2	0	1	2	2	8	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153816	exon7	c.T558G	p.I186M	AGATGGAATATCC	.	83	19	80	0	.	.	C	86267770	A	C	86267770	3	2	24	1	0	0	0	0	1	0	0	0	14939	242	9	4	2374	4	SNX14	6	86267770	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	31891	86267770	84847297	316	3420											
SYNCRIP	10492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	86351134	86351134	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgggctcttcagtaccattTccattaacatgttctgtagc	9	15	7	10	0	3	0	1	0	2	0	4	0	4	0	2	1	3	4	2	1	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006372	exon2	c.A24G	p.G8G	ACCATTTCCATTA	.	56	28	66	0	.	.	C	86351134	T	C	86351134	2	2	24	1	0	0	0	0	0	0	0	1	15501	1770	62	4		4	SYNCRIP	6	86351134	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	83364	86351134	84763933	317	3421											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90449961	90449961	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gtaaagttttacctccttttTtccaaagtcacccccagggt	9	14	6	12	0	1	0	1	0	0	0	3	0	3	0	5	1	1	2	5	1	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014611	exon32	c.A4585C	p.K1529Q	CCTTTTTTCCAAA	.	100	56	86	0	.	.	G	90449961	T	G	90449961	3	3	24	1	0	0	0	0	1	0	0	0	9465	1850	64	4	12489	4	MDN1	6	90449961	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4098827	90449961	80665106	318	3422											
GJA10	84694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90604202	90604202	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttaaccatgggggactggaaCttattgggtggcatcctaga	10	11	13	7	0	0	1	0	0	0	1	1	3	1	3	2	5	2	1	2	5	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032602	exon1	c.C15G	p.N5K	CTGGAACTTATTG	.	61	18	77	0	.	.	G	90604202	C	G	90604202	3	3	24	1	0	0	0	0	1	0	0	0	6443	564	20	5	17	5	GJA10	6	90604202	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	154241	90604202	80510865	319	3423											
PRDM13	59336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	100062584	100062584	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacgtggacgtctgcttcacAgacgaccagagcgaccccga	10	5	12	14	5	2	2	1	0	1	2	2	7	2	3	3	1	2	1	3	1	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021620	exon4	c.A2073G	p.T691T	CTTCACAGACGAC	.	11	6	14	0	.	.	G	100062584	A	G	100062584	2	3	24	1	0	0	0	0	0	0	0	1	12506	175	7	4		4	PRDM13	6	100062584	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	9458382	100062584	71052483	320	3424											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	101100758	101100758	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcgatgctttcttaatgttGggtcaatctatggcaaaaaa	12	14	8	7	1	3	0	1	0	2	0	4	1	3	0	0	2	1	3	0	2	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006828	exon18	c.C2831G	p.P944R	AATGTTGGGTCAA	.	89	5	128	0	.	.	C	101100758	G	C	101100758	3	2	24	1	0	0	0	0	1	0	0	0	1032	1348	47	5	3877	5	ASCC3	6	101100758	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1038174	101100758	70014309	321	3425											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	107006479	107006479	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	attcaacacacaaatacgctCtgttcaggttattggtggca	12	12	8	9	1	3	0	2	0	1	0	3	0	3	0	0	3	2	4	0	3	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001624	exon16	c.C4610T	p.S1537F	TACGCTCTGTTCA	.	40	10	45	0	.	.	T	107006479	C	T	107006479	3	4	24	1	0	0	0	0	1	0	0	0	427	913	32	3	4672	3	AIM1	6	107006479	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	5905721	107006479	64108588	322	3426											
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	111498823	111498823	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagtgtgggcagttggAataccacttgcactttttgg	8	14	12	7	0	0	0	0	0	0	0	0	1	0	1	1	3	3	4	1	3	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018593	exon3	c.A897C	p.G299G	AGTTGGAATACCA	.	13	6	11	0	.	.	C	111498823	A	C	111498823	2	2	24	1	0	0	0	0	0	0	0	1	14458	233	9	4		4	SLC16A10	6	111498823	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4492344	111498823	59616244	323	3427											
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	133014343	133014343	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtaacagcaggatcatggaAgagtatatcaaagcatgtga	16	8	12	5	0	2	2	2	1	0	1	2	4	2	4	0	3	3	4	0	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004666	exon4	c.T646G	p.F216V	CATGGAAGAGTAT	.	103	29	82	0	.	.	C	133014343	A	C	133014343	3	2	24	1	0	0	0	0	1	0	0	0	17242	72	3	4	911	4	VNN1	6	133014343	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	21515520	133014343	38100724	324	3428											
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	133034964	133034964	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gagagatggtagagatggtaCctgatctgctgctgatgtga	10	11	15	5	0	1	5	0	3	1	2	1	8	1	5	1	2	3	4	1	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004666	exon2	c.210+1G>A	.	ATGGTACCTGATC	.	35	13	58	0	.	.	T	133034964	C	T	133034964	5	4	24	1	0	0	0	0	0	0	1	0	17242	521	18	3	1358	3	VNN1	6	133034964	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	20621	133034964	38080103	325	3429											
RPS12	6206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	133137642	133137642	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgcatccaactgtgatgaGcctatgtatgtcaagttggt	9	14	10	8	0	1	2	1	2	0	0	2	2	2	2	2	1	3	3	2	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001016	exon4	c.G174T	p.E58D	TGATGAGCCTATG	.	19	9	36	0	.	.	T	133137642	G	T	133137642	3	4	24	1	0	0	0	0	1	0	0	0	13674	962	34	3	184	3	RPS12	6	133137642	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	102678	133137642	37977425	326	3430											
HBS1L	10767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	135358028	135358028	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	attggaattcttccctagctTtgaacttagaactttagttc	10	17	6	8	0	1	2	0	1	1	1	3	3	2	3	1	1	3	2	1	1	6	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145207	exon5	c.A1567C	p.K523Q	CTAGCTTTGAACT	.	70	15	111	0	.	.	G	135358028	T	G	135358028	3	3	24	1	0	0	0	0	1	0	0	0	7028	1850	64	4	2016	4	HBS1L	6	135358028	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2220386	135358028	35757039	327	3431											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	136597516	136597516	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agactctttatcactgaagtAatctagagcttcctgatctt	11	15	6	9	0	4	4	1	2	3	2	5	4	5	4	1	0	1	2	1	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014739	exon5	c.T1147C	p.Y383H	TGAAGTAATCTAG	.	149	31	210	0	.	.	G	136597516	A	G	136597516	3	3	24	1	0	0	0	0	1	0	0	0	1381	362	13	4	1651	4	BCLAF1	6	136597516	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1239488	136597516	34517551	328	3432											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	144744760	144744760	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggttttacatcagaacAatgtaagtgtgtaatgtgag	13	13	11	4	0	1	2	1	1	0	1	1	2	1	2	0	1	3	4	0	1	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007124	exon4	c.A310T	p.N104Y	CAGAACAATGTAA	.	21	15	40	0	.	.	T	144744760	A	T	144744760	3	4	24	1	0	0	0	0	1	0	0	0	17163	130	5	5	324	5	UTRN	6	144744760	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8147244	144744760	26370307	329	3433											
ZC3H12D	340152	broad.mit.edu	37	chr6	149772005	149772005	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcctcggtcgcgtacacTgaaagtcccccagtggcgcc	6	8	11	16	5	0	1	0	1	0	0	5	1	2	1	4	2	1	1	4	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZC3H12D	NM_207360	exon6	c.A1398G	p.S466S	GTACACTGAAAGT	.	9	4	12	0	.	21	C	149772005	T	C	149772005	2	2	24	1	0	0	0	0	0	0	0	1	17623	1567	55	4		4	ZC3H12D	6	149772005	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5027245	149772005	21343062	330	3434											
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153296425	153296425	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagaaaatgaggaatagccActgtcttcataaagtctact	16	10	8	7	0	3	2	1	1	2	1	3	4	3	3	1	1	2	0	1	1	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012177	exon2	c.T435C	p.S145S	ATAGCCACTGTCT	.	39	20	52	0	.	.	G	153296425	A	G	153296425	2	3	24	1	0	0	0	0	0	0	0	1	5791	156	6	4		4	FBXO5	6	153296425	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3524420	153296425	17818642	331	3435											
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153296461	153296461	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctactggtctctagtgcttcTatttcatttgtactattaag	8	19	6	8	0	3	0	1	0	2	0	4	0	3	0	0	1	3	2	0	1	6	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	FBXO5,mouth,carcinoma,0,1	FBXO5	NM_012177	exon2	c.A399G	p.I133M	TGCTTCTATTTCA	.	40	11	60	0	.	0	C	153296461	T	C	153296461	3	2	24	1	0	0	0	0	1	0	0	0	5791	1512	53	4	960	4	FBXO5	6	153296461	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	36	153296461	17818606	332	3436											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	157505453	157505453	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gagctccctgaaaaagcagtAtattcagtacctgtttgcct	11	12	8	10	0	1	1	1	1	0	0	2	2	2	1	3	0	4	5	3	0	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020732	exon13	c.A3434G	p.Y1145C	AGCAGTATATTCA	.	80	25	81	0	.	.	G	157505453	A	G	157505453	3	3	24	1	0	0	0	0	1	0	0	0	911	449	16	4	3484	4	ARID1B	6	157505453	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4208992	157505453	13609614	333	3437											
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	159208198	159208198	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tatccacatagtggaggccaAagtaccacacttcccggagg	12	7	10	12	1	0	0	0	0	0	0	2	2	2	2	4	4	1	1	4	4	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003379	exon3	c.T134G	p.F45C	AGGCCAAAGTACC	.	33	20	43	0	.	.	C	159208198	A	C	159208198	3	2	24	1	0	0	0	0	1	0	0	0	5363	14	1	4	1670	4	EZR	6	159208198	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1702745	159208198	11906869	334	3438											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	160511104	160511104	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacttcagtcggaaagttggAacctctgacaagaccaagta	14	8	9	10	1	2	2	1	1	1	1	3	4	2	4	2	2	1	2	2	2	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000876	exon44	c.A6624C	p.G2208G	AGTTGGAACCTCT	.	68	18	80	0	.	.	C	160511104	A	C	160511104	2	2	24	1	0	0	0	0	0	0	0	1	7620	233	9	4		4	IGF2R	6	160511104	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1302906	160511104	10603963	335	3439											
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167717430	167717430	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgtcctggctgtcctgAtgatagctgcgttcctccaa	5	13	12	11	1	0	2	0	2	0	0	4	2	4	2	4	2	2	3	4	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018974	exon5	c.A649G	p.M217V	GTCCTGATGATAG	.	88	28	69	0	.	.	G	167717430	A	G	167717430	3	3	24	1	0	0	0	0	1	0	0	0	17056	333	12	4	667	4	UNC93A	6	167717430	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7206326	167717430	3397637	336	3440											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168307886	168307886	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacagcgacagagtgtcgtcTgcctctagcacagccgagcg	9	6	13	13	4	2	1	0	0	2	1	3	4	2	1	2	0	5	1	2	0	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001040000	exon13	c.T1686C	p.S562S	GTCGTCTGCCTCT	.	23	9	39	0	.	.	C	168307886	T	C	168307886	2	2	24	1	0	0	0	0	0	0	0	1	9677	1567	55	4		4	MLLT4	6	168307886	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	590456	168307886	2807181	337	3441											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168348587	168348587	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgcctctggaacaacagcgaAgataacatctgtctctactg	12	10	8	11	1	3	1	0	0	3	1	4	3	3	2	1	1	6	0	1	1	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MLLT4_ENST00000392108,NS,carcinoma,0,3	MLLT4_ENST00000392108	NM_001040000	exon27	c.A3587C	p.K1196T	CAGCGAAGATAAC	.	19	9	37	0	.	0	C	168348587	A	C	168348587	3	2	24	1	0	0	0	0	1	0	0	0	9677	72	3	4	3693	4	MLLT4	6	168348587	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	40701	168348587	2766480	338	3442											
DLL1	28514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	170597586	170597586	+	Splice_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atgagtctttctgggttttcTacggggagaagatgctcctg	7	14	13	7	1	3	3	0	1	3	2	4	4	4	3	1	3	2	2	1	3	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005618	exon5	c.413-2A>C	.	GTTTTCTACGGGG	.	28	11	33	0	.	.	G	170597586	T	G	170597586	5	3	24	1	0	0	0	0	0	0	1	0	4594	1536	53	4	1792	4	DLL1	6	170597586	Splice_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2248999	170597586	517481	339	3443											
ZFAND2A	90637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1197813	1197813	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cctagctgcttgcaagtcttTtctgaacaatgcttccccaa	9	13	6	13	0	2	1	0	1	2	0	3	1	3	1	3	0	5	4	3	0	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182491	exon2	c.A36C	p.E12D	AGTCTTTTCTGAA	.	21	7	49	0	.	.	G	1197813	T	G	1197813	3	3	24	1	0	0	0	0	1	0	0	0	17685	1838	64	4	417	4	ZFAND2A	7	1197813	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		1197813	157940850	340	3444											
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1587391	1587391	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtacctggtgaattctcCttcttctctgcgtacacctg	5	15	9	12	1	3	1	0	1	3	0	5	1	3	1	3	2	3	2	3	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001097620	exon8	c.G999A	p.K333K	ATTCTCCTTCTTC	.	48	23	80	0	.	.	T	1587391	C	T	1587391	2	4	24	1	0	0	0	0	0	0	0	1	16164	680	24	3		3	TMEM184A	7	1587391	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	389578	1587391	157551272	341	3445											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2977638	2977638	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcccagggtcgagcacttgAgctccaggtcctccttctcc	5	11	9	16	1	1	1	0	1	1	0	7	2	5	1	5	2	2	2	5	2	0	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032415	exon8	c.T1046C	p.L349P	CACTTGAGCTCCA	.	14	4	33	0	.	.	G	2977638	A	G	2977638	3	3	24	1	0	0	0	0	1	0	0	0	2663	304	11	4	2490	4	CARD11	7	2977638	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1390247	2977638	156161025	342	3446											
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5632703	5632703	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgaagaagaagcagatcTggacgctggagcagccccct	11	5	13	12	1	1	4	0	1	1	3	1	6	1	6	3	2	3	3	3	2	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003088	exon1	c.T136C	p.W46R	CAGATCTGGACGC	.	35	14	53	0	.	.	C	5632703	T	C	5632703	3	2	24	1	0	0	0	0	1	0	0	0	6102	1580	55	4	138	4	FSCN1	7	5632703	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2655065	5632703	153505960	343	3447											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	7476074	7476074	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	tctcccttaaatccaggtatCccaggtcctcctctatctcc	7	13	4	17	0	3	0	0	0	3	0	9	0	7	0	6	2	0	1	6	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	COL28A1,NS,carcinoma,0,1	COL28A1	NM_001037763	exon23	c.G1812C	p.G604G	AGGTATCCCAGGT	.	69	29	90	0	.	0	G	7476074	C	G	7476074	2	3	24	1	0	0	0	0	0	0	0	1	3709	842	30	5		5	COL28A1	7	7476074	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1843371	7476074	151662589	344	3448											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	11419301	11419301	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actacacggtgggttacaagAcctgtcggcatcaggctggc	9	8	13	11	2	1	1	1	0	0	1	2	1	1	1	1	5	2	3	1	5	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015204	exon24	c.T4546A	p.S1516T	TACAAGACCTGTC	.	48	20	70	0	.	.	T	11419301	A	T	11419301	3	4	24	1	0	0	0	0	1	0	0	0	15939	275	10	5	443	5	THSD7A	7	11419301	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3943227	11419301	147719362	345	3449											
DGKB	1607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	14613961	14613961	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtgctgttttcaatgTcttttagaattttcatcaga	8	21	6	6	0	5	2	3	0	2	2	5	2	5	2	0	0	1	2	0	0	3	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145695	exon19	c.A1649C	p.D550A	TCAATGTCTTTTA	.	31	13	49	0	.	.	G	14613961	T	G	14613961	3	3	24	1	0	0	0	0	1	0	0	0	4494	1667	58	4	808	4	DGKB	7	14613961	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3194660	14613961	144524702	346	3450											
DNAH11	8701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21630880	21630880	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctggaagttgaataccctctGattgaagatgagctgagggc	11	10	13	7	0	1	6	0	5	1	1	1	7	1	7	1	2	2	2	1	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.L784L	.	.	CCCTCTGATTGAA	.	31	16	71	0	.	.	A	21630880	G	A	21630880	2	1	24	1	0	0	0	0	0	0	0	1	4627	1277	45	3		3	DNAH11	7	21630880	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	7016919	21630880	137507783	347	3451											
HOXA6	3203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27187127	27187127	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cgccactgaggtccttatcaGaatagaaacacgaggccccg	12	6	10	13	3	1	3	1	1	0	2	2	4	2	3	4	2	1	0	4	2	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024014	exon1	c.C242G	p.S81C	TTATCAGAATAGA	.	32	13	52	0	.	.	C	27187127	G	C	27187127	3	2	24	1	0	0	0	0	1	0	0	0	7337	942	33	5	467	5	HOXA6	7	27187127	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5556247	27187127	131951536	348	3452											
VPS41	27072	hgsc.bcm.edu	37	chr7	38791865	38791865	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagactgatctgtttttcatGgtaacgctgccccttatggt	8	15	9	9	1	2	2	1	1	1	1	2	2	2	2	2	2	2	3	2	2	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014396	exon22	c.C1837A	p.H613N	TTTCATGGTAACG	.	83	3	147	0	.	.	T	38791865	G	T	38791865	3	4	24	1	0	0	0	0	1	0	0	0	17270	1348	47	3	759	3	VPS41	7	38791865	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	11604738	38791865	120346798	349	3453											
VPS41	27072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	38860830	38860830	+	Frame_Shift_Del	DEL	A	A	-																															ggacagtcaaaagtctcgtgAaattcttctccagaatacag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014396	exon6	c.358delC	p.H120fs	CTCGTGAAATTCT	.	49	21	65	0	.	.	-	38860830	A	-	38860830	7	5	24	1	0	1	0	1	0	0	0	0	17270	243	9	0	2303	0	VPS41	7	38860830	Frame_Shift_Del	DEL	A	TCGA-W5-AA39-01A-11D-A417-09	68965	38860830	120277833	350	3454											
INHBA	3624	broad.mit.edu;bcgsc.ca	37	chr7	41729636	41729636	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gagggtggtcttcagactgcCgggcctgcagcatgaggaaa	9	7	16	9	1	2	2	1	1	1	1	2	4	2	3	2	4	3	2	2	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	INHBA	NM_002192	exon3	c.G893A	p.R298Q	GACTGCCGGGCCT	.	15	10	39	1	.	118	T	41729636	C	T	41729636	3	4	24	1	0	0	0	0	1	0	0	0	7785	652	23	1	391	1	INHBA	7	41729636	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2868806	41729636	117409027	351	3455											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48315409	48315409	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaagttttattgaaaaaaGtgaaacaccttacaactttg	17	13	5	6	0	1	2	1	2	0	0	1	2	1	2	1	0	3	1	1	0	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152701	exon17	c.G6146T	p.S2049I	AAAAAAGTGAAAC	.	55	12	66	0	.	.	T	48315409	G	T	48315409	3	4	24	1	0	0	0	0	1	0	0	0	31	1029	36	3	6041	3	ABCA13	7	48315409	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6585773	48315409	110823254	352	3456											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48443439	48443439	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggggtggacccttgctcccgGcatagcctgtgggacattct	5	10	14	12	1	1	0	0	0	1	0	2	2	2	2	3	5	2	2	3	5	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152701	exon39	c.G12033A	p.R4011R	CTCCCGGCATAGC	.	36	15	50	0	.	.	A	48443439	G	A	48443439	2	1	24	1	0	0	0	0	0	0	0	1	31	1190	42	3		3	ABCA13	7	48443439	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	128030	48443439	110695224	353	3457											
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	65425890	65425890	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtatcagtcttgctcaagtAaacaggctgttttccaaaca	12	12	8	9	0	3	0	2	0	1	0	4	0	4	0	1	2	3	5	1	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000181	exon12	c.T1950C	p.F650F	TCAAGTAAACAGG	.	59	30	107	0	.	.	G	65425890	A	G	65425890	2	3	24	1	0	0	0	0	0	0	0	1	6943	359	13	4		4	GUSB	7	65425890	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	16982451	65425890	93712773	354	3458											
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	65425957	65425973	+	Frame_Shift_Del	DEL	TTCCAGTATCTCTCTCG	TTCCAGTATCTCTCTCG	-																															acctggtttcattggcaatcTtccagtatctctctcgcaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TTCCAGTATCTCTCTCG	TTCCAGTATCTCTCTCG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GUSB,NS,carcinoma,0,1	GUSB	NM_000181	exon12	c.1868_1884del	p.623_628del	GCAATCTTCCAGT	.	47	11	113	0	.	0	-	65425973	TTCCAGTATCTCTCTCG	-	65425957	7	5	24	1	0	1	0	1	0	0	0	0	6943	1609	56	0	76	0	GUSB	7	65425957	Frame_Shift_Del	DEL	TTCCAGTATCTCTCTCG	TCGA-W5-AA39-01A-11D-A417-09	67	65425957	93712706	355	3459											
RABGEF1	154881	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	66270137	66270137	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgctttgtagatatcattgaAatggattccaagcgtgtgcc	10	14	10	7	1	1	2	1	1	0	1	2	3	2	3	2	1	3	2	2	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RABGEF1	NM_014504	exon8	c.A831C	p.E277D	CATTGAAATGGAT	.	36	10	59	1	.	56	C	66270137	A	C	66270137	3	2	24	1	0	0	0	0	1	0	0	0	13018	11	1	4	857	4	RABGEF1	7	66270137	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	844180	66270137	92868526	356	3460											
ELN	2006	hgsc.bcm.edu	37	chr7	73474781	73474782	+	Missense_Mutation	DNP	CT	CT	TC																															ccctggacttggagttggtgCtggtgttcctggacttggag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1713C	p.A601V	TGGTGCTGGTGTT	.	16	4	31	0	.	.	TC	73474782	CT	TC	73474781	3	4	24	1	0	0	0	0	1	0	0	0	5099	797	28	3	1810	3	ELN	7	73474781	Missense_Mutation	DNP	CT	TCGA-W5-AA39-01A-11D-A417-09	7204644	73474781	85663882	357	3461	26	3									
ELN	2006	hgsc.bcm.edu	37	chr7	73474785	73474785	+	Silent	SNP	T	T	C																															ggacttggagttggtgctggTgttcctggacttggagttgg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1716C	p.G572G	TGCTGGTGTTCCT	.	16	4	31	0	.	.	C	73474785	T	C	73474785	2	2	24	1	0	0	0	0	0	0	0	1	5099	1683	59	4		4	ELN	7	73474785	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4	73474785	85663878	358	3462	26	3									
ELN	2006	hgsc.bcm.edu	37	chr7	73474788	73474788	+	Silent	SNP	T	T	C																															cttggagttggtgctggtgtTcctggacttggagttggtgc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1719C	p.V573V	TGGTGTTCCTGGA	.	16	4	31	0	.	.	C	73474788	T	C	73474788	2	2	24	1	0	0	0	0	0	0	0	1	5099	1770	62	4		4	ELN	7	73474788	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3	73474788	85663875	359	3463	26	3									
RFC2	5982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73661064	73661064	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctttttgttgagcaaacattTtaattttattcctcacaacg	11	18	4	8	1	1	1	1	1	0	0	2	1	2	1	1	0	3	2	1	0	4	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181471	exon5	c.A362C	p.K121T	AACATTTTAATTT	.	56	29	66	0	.	.	G	73661064	T	G	73661064	3	3	24	1	0	0	0	0	1	0	0	0	13297	1841	64	4	730	4	RFC2	7	73661064	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	186276	73661064	85477599	360	3464											
POR	5447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	75615316	75615316	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctacctgtaccgggaggagcTggcgcagttccacagggacg	8	6	15	12	3	0	0	0	0	0	0	1	3	1	3	3	4	3	4	3	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000941	exon14	c.T1745A	p.L582Q	AGGAGCTGGCGCA	.	9	4	26	0	.	.	A	75615316	T	A	75615316	3	1	24	1	0	0	0	0	1	0	0	0	12305	1580	55	5	1795	5	POR	7	75615316	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1954252	75615316	83523347	361	3465											
SEMA3D	223117	hgsc.bcm.edu	37	chr7	84651769	84651769	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgacatgatccaccactatcTgtgtcagtctgtaatccaca	11	12	6	12	0	3	2	1	2	2	0	5	2	5	2	3	0	0	1	3	0	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	SEMA3D,NS,adenocarcinoma,0,1	SEMA3D	NM_152754	exon11	c.A1352G	p.Q451R	ACTATCTGTGTCA	.	49	2	62	0	.	0	C	84651769	T	C	84651769	3	2	24	1	0	0	0	0	1	0	0	0	14081	1580	55	4	1009	4	SEMA3D	7	84651769	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9036453	84651769	74486894	362	3466											
GATAD1	57798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92078113	92078113	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gctcggctcagaaacactaaAtacaaatctgctccggctgc	12	8	8	13	2	2	1	1	0	1	1	4	1	3	1	1	2	4	4	1	2	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021167	exon2	c.A297T	p.K99N	CACTAAATACAAA	.	37	14	74	0	.	.	T	92078113	A	T	92078113	3	4	24	1	0	0	0	0	1	0	0	0	6299	98	4	5	303	5	GATAD1	7	92078113	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7426344	92078113	67060550	363	3467											
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	93073026	93073026	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcatccagaaatagttgcagGccatcatgtactggtggaaa	13	9	11	8	0	1	1	1	0	0	1	2	2	2	2	2	3	2	4	2	3	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001164737	exon11	c.C794T	p.A265V	TTGCAGGCCATCA	.	33	14	54	0	.	.	A	93073026	G	A	93073026	3	1	24	1	0	0	0	0	1	0	0	0	2597	1203	42	3	756	3	CALCR	7	93073026	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	994913	93073026	66065637	364	3468											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99247744	99247744	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aagttctgaaggactctgatTagagcaagtttcatgttcat	12	14	9	6	0	4	3	2	2	2	1	4	4	4	4	0	1	1	4	0	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.A1365G	p.L455L	TCTGATTAGAGCA	.	103	10	152	0	.	.	C	99247744	T	C	99247744	2	2	24	1	0	0	0	0	0	0	0	1	4203	1741	61	4		4	CYP3A5	7	99247744	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6174718	99247744	59890919	365	3469											
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99247826	99247826	+	Frame_Shift_Del	DEL	G	G	-																															caaagggtgtgtatatgtaaGgatctatgctgtccttcttc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1284delT	p.P428fs	ATGTAAGGATCTA	.	61	22	121	0	.	.	-	99247826	G	-	99247826	7	5	24	1	0	1	0	1	0	0	0	0	4203	1000	35	0	233	0	CYP3A5	7	99247826	Frame_Shift_Del	DEL	G	TCGA-W5-AA39-01A-11D-A417-09	82	99247826	59890837	366	3470	27	3									
CYP3A5	1577	hgsc.bcm.edu	37	chr7	99247827	99247829	+	In_Frame_Del	DEL	GAT	GAT	-																															aaagggtgtgtatatgtaagGatctatgctgtccttcttct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1281_1283del	p.427_428del	TGTAAGGATCTAT	.	61	0	123	0	.	.	-	99247829	GAT	-	99247827	7	5	24	1	0	1	0	1	0	0	0	0	4203	1174	41	0	234	0	CYP3A5	7	99247827	In_Frame_Del	DEL	GAT	TCGA-W5-AA39-01A-11D-A417-09	1	99247827	59890836	367	3471	27	3									
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99247829	99247829	+	Frame_Shift_Del	DEL	T	T	-																															agggtgtgtatatgtaaggaTctatgctgtccttcttctta																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1281delT	p.D427fs	TAAGGATCTATGC	.	62	22	117	0	.	.	-	99247829	T	-	99247829	7	5	24	1	0	1	0	1	0	0	0	0	4203	1435	50	0	236	0	CYP3A5	7	99247829	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	2	99247829	59890834	368	3472	27	3									
BCAP29	55973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107258885	107258885	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctctagaaaatttaagttCagaaaaatgcactatgaccg	16	10	7	8	1	2	3	1	1	1	2	2	3	2	3	2	0	1	2	2	0	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008405	exon8	c.C882A	p.F294L	TAAGTTCAGAAAA	.	59	29	116	0	.	.	A	107258885	C	A	107258885	3	1	24	1	0	0	0	0	1	0	0	0	1344	825	29	3	912	3	BCAP29	7	107258885	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	8011056	107258885	51879778	369	3473											
NRCAM	4897	hgsc.bcm.edu	37	chr7	107824716	107824716	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaccaaattatcaggctctGatcccagtccttccacagct	10	11	5	15	0	3	1	2	1	1	0	6	1	6	1	4	1	1	2	4	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037132	exon19	c.C2273A	p.S758X	GGCTCTGATCCCA	.	51	4	77	0	.	.	T	107824716	G	T	107824716	4	4	24	1	0	0	0	0	0	1	0	0	10692	1294	45	3	1719	3	NRCAM	7	107824716	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	565831	107824716	51313947	370	3474											
TSPAN12	23554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	120496757	120496757	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtgaaacttacttacccaaaAgagcagattgagggcgtaga	15	8	11	7	1	0	5	0	2	0	3	0	5	0	5	1	1	4	2	1	1	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012338	exon2	c.T61G	p.F21V	CCCAAAAGAGCAG	.	52	18	63	0	.	.	C	120496757	A	C	120496757	3	2	24	1	0	0	0	0	1	0	0	0	16697	72	3	4	884	4	TSPAN12	7	120496757	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	12672041	120496757	38641906	371	3475											
COPG2	26958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	130147634	130147634	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttcagtactttctgaatatGgtcagacacagtcacttcga	11	13	7	10	1	4	2	3	1	1	1	5	3	4	2	0	1	1	1	0	1	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.H44Y	.	.	GAATATGGTCAGA	.	16	6	29	0	.	.	A	130147634	G	A	130147634	3	1	24	1	0	0	0	0	1	0	0	0	3755	1348	47	3	349	3	COPG2	7	130147634	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	9650877	130147634	28991029	372	3476											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	131887488	131887488	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcagggcagtgctggcGcagggtgcactggcctgggc	4	6	20	11	1	0	0	0	0	0	0	0	0	0	0	1	6	2	5	1	6	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020911	exon12	c.C2503T	p.R835C	GCTGGCGCAGGGT	.	69	33	79	0	.	.	A	131887488	G	A	131887488	3	1	24	1	0	0	0	0	1	0	0	0	12170	1087	38	1	3265	1	PLXNA4	7	131887488	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1739854	131887488	27251175	373	3477											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	136700368	136700368	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacaacatgcccagcagtgaCgatggcctggagcacaacaa	15	4	10	12	1	0	1	0	1	0	0	0	3	0	2	2	2	6	2	2	2	4	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHRM2,colon,carcinoma,+2,1	CHRM2	NM_001006632	exon3	c.C756T	p.D252D	CAGTGACGATGGC	.	25	11	45	0	.	+2	T	136700368	C	T	136700368	2	4	24	1	0	0	0	0	0	0	0	1	3399	535	19	1		1	CHRM2	7	136700368	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4812880	136700368	22438295	374	3478											
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	138968747	138968747	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggtttcaaatctcccttctcGatggctgcctccccaaaact	8	12	6	15	1	3	0	1	0	2	0	6	1	4	0	4	2	2	2	4	2	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173569	exon15	c.G3096A	p.S1032S	CTTCTCGATGGCT	.	15	6	21	0	.	.	A	138968747	G	A	138968747	2	1	24	1	0	0	0	0	0	0	0	1	16954	1045	37	1		1	UBN2	7	138968747	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2268379	138968747	20169916	375	3479											
ADCK2	90956	ucsc.edu	37	chr7	140373610	140373610	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acccggcgcgatctgttttcGgaggctttctgtgcccaatt	5	13	11	12	4	2	0	0	0	2	0	3	2	2	1	2	3	1	2	2	3	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADCK2	NM_052853	exon1	c.G480A	p.S160S	GTTTTCGGAGGCT	.	33	4	45	0	.	37	A	140373610	G	A	140373610	2	1	24	1	0	0	0	0	0	0	0	1	288	1103	39	1		1	ADCK2	7	140373610	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1404863	140373610	18765053	376	3480											
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu	37	chr7	142749878	142749878	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cagctggctggggctgcctgGgcagctcctttcctagccat	4	10	13	14	0	0	0	0	0	0	0	2	0	2	0	4	4	4	5	4	4	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001667	exon1	c.G441A	p.W147X	TGCCTGGGCAGCT	.	34	15	44	0	.	.	A	142749878	G	A	142749878	4	1	24	1	0	0	0	0	0	1	0	0	11258	1241	43	3	443	3	OR6V1	7	142749878	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2376268	142749878	16388785	377	3481											
OR2A2	442361	hgsc.bcm.edu	37	chr7	143807373	143807373	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatccagacaaaggagggccGcataaaggccttctccacct	12	6	10	13	1	1	1	0	0	1	1	3	3	2	2	5	3	0	1	5	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	OR2A2,colon,carcinoma,0,1	OR2A2	NM_001005480	exon1	c.G698A	p.R233H	AGGGCCGCATAAA	.	31	2	59	0	.	0	A	143807373	G	A	143807373	3	1	24	1	0	0	0	0	1	0	0	0	11025	1087	38	1	700	1	OR2A2	7	143807373	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1057495	143807373	15331290	378	3482											
GIMAP8	155038	hgsc.bcm.edu	37	chr7	150174405	150174406	+	Frame_Shift_Ins	INS	-	-	C																															gacccatcccggttagaagaINSggaggtcaagcgctgtttgt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175571	exon5	c.1535_1536insC	p.E512fs	TAGAAGAGGAGGT	.	34	14	63	0	.	.	C	150174406	-	C	150174405	7	5	24	1	0	1	1	0	0	0	0	0	6427	304	11	0	1549	0	GIMAP8	7	150174405	Frame_Shift_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	6367032	150174405	8964258	379	3483	28	2									
GIMAP8	155038	hgsc.bcm.edu	37	chr7	150174406	150174407	+	Frame_Shift_Ins	INS	-	-	A																															acccatcccggttagaagagINSgaggtcaagcgctgtttgtc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175571	exon5	c.1536_1537insA	p.E512fs	AGAAGAGGAGGTC	.	35	14	64	0	.	.	A	150174407	-	A	150174406	7	5	24	1	0	1	1	0	0	0	0	0	6427	991	35	0	1550	0	GIMAP8	7	150174406	Frame_Shift_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	1	150174406	8964257	380	3484	28	2									
NUB1	51667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151072981	151072981	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggttaaatgattccaatccTgaaaccgacaaccgtcaaga	15	9	7	10	2	1	3	1	2	0	1	3	4	3	3	4	1	2	1	4	1	6	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001243351	exon13	c.T1515A	p.P505P	CAATCCTGAAACC	.	87	35	87	0	.	.	A	151072981	T	A	151072981	2	1	24	1	0	0	0	0	0	0	0	1	10762	1567	55	5		5	NUB1	7	151072981	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	898575	151072981	8065682	381	3485											
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	156589175	156589175	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gttggaaaaaagggaagcaaGattccacaaacctataaaaa	21	6	8	6	0	0	1	0	0	0	1	1	3	1	3	2	2	2	2	2	2	10	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022458	exon5	c.C331T	p.L111F	AAGCAAGATTCCA	.	66	27	108	0	.	.	A	156589175	G	A	156589175	3	1	24	1	0	0	0	0	1	0	0	0	8881	942	33	3	1193	3	LMBR1	7	156589175	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5516194	156589175	2549488	382	3486											
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	156745289	156745289	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	acatgtaaaaggtctacttaAcaggtgaccttgtagtgttg	12	13	10	6	0	1	1	0	1	1	0	1	1	1	1	1	2	2	3	1	2	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NOM1,bladder,carcinoma,0,1	NOM1	NM_138400	exon2	c.A1109G	p.N370S	TACTTAACAGGTG	.	71	31	114	0	.	0	G	156745289	A	G	156745289	3	3	24	1	0	0	0	0	1	0	0	0	10577	43	2	4	1115	4	NOM1	7	156745289	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	156114	156745289	2393374	383	3487											
DNAJB6	10049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	157208727	157208727	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taggattgaaagaaggtggcAagaggaagaagcagaagcag	18	4	16	3	0	0	5	0	1	0	4	0	7	0	7	0	4	2	3	0	4	7	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_058246	exon10	c.A916G	p.K306E	GGTGGCAAGAGGA	.	32	13	79	0	.	.	G	157208727	A	G	157208727	3	3	24	1	0	0	0	0	1	0	0	0	4651	131	5	4	985	4	DNAJB6	7	157208727	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	463438	157208727	1929936	384	3488											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2886950	2886950	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagctcagcaatacttgAgcaccgtactcattcaagga	12	9	8	12	1	3	1	3	1	0	0	3	2	3	2	1	1	6	5	1	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033225	exon51	c.T7746G	p.A2582A	TACTTGAGCACCG	.	19	8	31	0	.	.	C	2886950	A	C	2886950	2	2	24	1	0	0	0	0	0	0	0	1	3969	291	11	4		4	CSMD1	8	2886950	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09		2886950	143477072	385	3489											
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11704585	11704585	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttgtagagcaggaagtccgAatacacagagaaagctccct	14	7	10	10	1	0	2	0	0	0	2	2	5	2	3	2	1	3	3	2	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_147780	exon10	c.T769G	p.S257A	AGTCCGAATACAC	.	43	14	62	0	.	.	C	11704585	A	C	11704585	3	2	24	1	0	0	0	0	1	0	0	0	4054	246	9	4	262	4	CTSB	8	11704585	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8817635	11704585	134659437	386	3490											
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17510965	17510965	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgcttctcagaaagtaaaTcttcaagcgatttcttttct	10	16	5	10	1	5	1	2	0	4	1	6	2	5	1	1	0	2	2	1	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001924	exon11	c.A3257G	p.D1086G	AGTAAATCTTCAA	.	59	25	96	0	.	.	C	17510965	T	C	17510965	3	2	24	1	0	0	0	0	1	0	0	0	10013	1435	50	4	575	4	MTUS1	8	17510965	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5806380	17510965	128853057	387	3491											
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	18662106	18662106	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctgcaactagtttgctaaaTtcgttgctataagaaaacag	14	13	7	7	1	1	1	0	0	1	1	2	1	1	1	0	0	5	5	0	0	8	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015310	exon6	c.A1836C	p.E612D	GCTAAATTCGTTG	.	66	23	103	0	.	.	G	18662106	T	G	18662106	3	3	24	1	0	0	0	0	1	0	0	0	12697	1490	52	4	1351	4	PSD3	8	18662106	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1151141	18662106	127701916	388	3492											
INTS10	55174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	19700398	19700398	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtaccagcaaggctaTcatgccatactgcctccatt	9	11	7	14	0	1	0	1	0	0	0	2	0	2	0	5	1	5	3	5	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018142	exon14	c.T1679C	p.I560T	AGGCTATCATGCC	.	34	16	71	0	.	.	C	19700398	T	C	19700398	3	2	24	1	0	0	0	0	1	0	0	0	7820	1435	50	4	1733	4	INTS10	8	19700398	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1038292	19700398	126663624	389	3493											
TNFRSF10D	8793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	23003411	23003411	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccggggcgtacaattactgAccttgaccatccctctggga	8	10	10	13	2	1	2	0	2	1	0	3	3	3	3	4	3	2	1	4	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003840	exon5	c.T506C	p.V169A	TTACTGACCTTGA	.	42	14	53	0	.	.	G	23003411	A	G	23003411	3	3	24	1	0	0	0	0	1	0	0	0	16343	275	10	4	674	4	TNFRSF10D	8	23003411	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3303013	23003411	123360611	390	3494											
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	23198669	23198669	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgcgcttgcggtaggtTgagaggatggctcgaatccg	6	9	19	7	4	0	1	0	1	0	1	2	4	1	2	1	6	2	4	1	6	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002318	exon4	c.A579C	p.S193S	GTAGGTTGAGAGG	.	41	16	41	0	.	.	G	23198669	T	G	23198669	2	3	24	1	0	0	0	0	0	0	0	1	8945	1799	63	4		4	LOXL2	8	23198669	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	195258	23198669	123165353	391	3495											
NEFM	4741	hgsc.bcm.edu	37	chr8	24775376	24775376	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggcaagtctcctgtgTcaaaatcaccagtggaagag	15	7	11	8	0	3	2	2	0	1	2	4	3	3	3	2	2	0	1	2	2	5	0	rs201305028		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NEFM,lower_third,carcinoma,-2,1	NEFM	NM_005382	exon3	c.T2008C	p.S670P	CCTGTGTCAAAAT	.	97	4	127	0	.	-2	C	24775376	T	C	24775376	3	2	24	1	0	0	0	0	1	0	0	0	10363	1667	58	4	2018	4	NEFM	8	24775376	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1576707	24775376	121588646	392	3496											
BNIP3L	0	broad.mit.edu	37	chr8	26240232	26240232	+	RNA	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagtgagtcctaagaggtagAaaacagatgcgtgcgcaggg	14	6	15	6	2	0	4	0	1	0	3	1	4	1	4	1	2	3	2	1	2	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BNIP3L	.	.	.	.	AGGTAGAAAACAG	.	5	2	22	1	.	7	C	26240232	A	C	26240232	1	2	24	0	1	0	0	0	0	0	0	0	1478	261	9	4		4	BNIP3L	8	26240232	RNA	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1464856	26240232	120123790	393	3497											
DCTN6	10671	hgsc.bcm.edu	37	chr8	30013852	30013852	+	RNA	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatcgcatgtggaattatcgCtctacccaggcggtggtgtc	8	11	12	10	3	1	0	0	0	1	0	4	1	1	1	1	4	1	2	1	4	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTATCGCTCTACC	.	40	12	56	0	.	.	G	30013852	C	G	30013852	1	3	24	0	1	0	0	0	0	0	0	0	4334	812	28	5		5	DCTN6	8	30013852	RNA	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3773620	30013852	116350170	394	3498											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	35544140	35544140	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttgcggatccgggagtgcAcagcaccacccccgagaaat	11	6	11	13	3	0	1	0	0	0	1	1	4	1	3	4	2	3	2	4	2	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080872	exon7	c.A997T	p.T333S	GAGTGCACAGCAC	.	26	13	60	0	.	.	T	35544140	A	T	35544140	3	4	24	1	0	0	0	0	1	0	0	0	17055	159	6	5	1023	5	UNC5D	8	35544140	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5530288	35544140	110819882	395	3499											
KCNU1	157855	hgsc.bcm.edu	37	chr8	36675277	36675277	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaattgttttcctgggaGagtaagtatatctgtatggc	10	15	11	5	0	1	2	0	1	1	1	2	3	2	2	1	2	0	4	1	2	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001031836	exon10	c.G1105T	p.E369X	CTGGGAGAGTAAG	.	86	5	119	0	.	.	T	36675277	G	T	36675277	4	4	24	1	0	0	0	0	0	1	0	0	8137	956	33	3	1143	3	KCNU1	8	36675277	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1131137	36675277	109688745	396	3500											
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	38205356	38205356	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtttggaatttctgaatgatAatagtcagtggggctaaagt	12	14	12	3	0	2	2	1	2	1	0	2	3	2	3	0	3	0	2	0	3	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017778	exon2	c.T334C	p.Y112H	AATGATAATAGTC	.	68	28	96	0	.	.	G	38205356	A	G	38205356	3	3	24	1	0	0	0	0	1	0	0	0	17423	362	13	4	4158	4	WHSC1L1	8	38205356	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1530079	38205356	108158666	397	3501											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	53568653	53568653	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctccaatttaaattcttttaGggcagtctgaatagcttcat	11	16	6	8	0	3	1	1	1	2	0	4	1	4	1	1	1	1	2	1	1	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001083617	exon15	c.C3736T	p.L1246L	CTTTTAGGGCAGT	.	55	26	55	0	.	.	A	53568653	G	A	53568653	2	1	24	1	0	0	0	0	0	0	0	1	13151	991	35	3		3	RB1CC1	8	53568653	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	15363297	53568653	92795369	398	3502											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	56015559	56015559	+	Missense_Mutation	SNP	T	T	G																															tccgctggtttgtgcacgatTtcagcaccgaggacagcgcc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052898	exon1	c.T511G	p.F171V	CACGATTTCAGCA	.	23	9	22	0	.	.	G	56015559	T	G	56015559	3	3	24	1	0	0	0	0	1	0	0	0	17493	1841	64	4	513	4	XKR4	8	56015559	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2446906	56015559	90348463	399	3503	29	2									
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	56015562	56015562	+	Missense_Mutation	SNP	A	A	T																															gctggtttgtgcacgatttcAgcaccgaggacagcgccacg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052898	exon1	c.A514T	p.S172C	GATTTCAGCACCG	.	23	11	22	0	.	.	T	56015562	A	T	56015562	3	4	24	1	0	0	0	0	1	0	0	0	17493	188	7	5	516	5	XKR4	8	56015562	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3	56015562	90348460	400	3504	29	2									
SDR16C5	195814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	57228891	57228892	+	Nonsense_Mutation	DNP	GC	GC	AA																															gaacagtttctttgatgattGcaggttgaaagacatgttct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138969	exon2	c.G15T	p.Q6*	TGATTGCAGGTTG	.	15	7	27	0	.	.	AA	57228892	GC	AA	57228891	4	1	24	1	0	0	0	0	0	1	0	0	14025	1328	46	3	937	3	SDR16C5	8	57228891	Nonsense_Mutation	DNP	GC	TCGA-W5-AA39-01A-11D-A417-09	1213329	57228891	89135131	401	3505											
CHD7	55636	hgsc.bcm.edu	37	chr8	61713037	61713037	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcagatgatgcagatGctgctgggagggattccccc	9	7	16	9	0	0	3	0	1	0	2	1	6	1	6	2	4	3	4	2	4	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHD7_ENST00000423902,NS,carcinoma,0,2	CHD7_ENST00000423902	NM_017780	exon5	c.G2329A	p.A777T	GCAGATGCTGCTG	.	55	2	85	0	.	0	A	61713037	G	A	61713037	3	1	24	1	0	0	0	0	1	0	0	0	3352	1319	46	3	2343	3	CHD7	8	61713037	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4484146	61713037	84650985	402	3506											
TRIM55	84675	hgsc.bcm.edu	37	chr8	67049405	67049405	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagtgatcagccagctggaaGacacctgcaaaactatcgag	14	6	11	10	1	1	2	1	1	0	1	2	5	1	3	2	1	4	2	2	1	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TRIM55,trunk,malignant_melanoma,0,1	TRIM55	NM_184086	exon4	c.G583T	p.D195Y	CTGGAAGACACCT	.	23	2	28	0	.	0	T	67049405	G	T	67049405	3	4	24	1	0	0	0	0	1	0	0	0	16590	942	33	3	597	3	TRIM55	8	67049405	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5336368	67049405	79314617	403	3507											
TRAM1	23471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	71495450	71495450	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tactgttggtttcttcttcaCagctggtgcctgaaaagcag	8	14	10	9	0	3	1	1	1	2	0	3	1	3	1	1	2	4	4	1	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014294	exon10	c.G1000T	p.V334L	TCTTCACAGCTGG	.	24	11	62	0	.	.	A	71495450	C	A	71495450	3	1	24	1	0	0	0	0	1	0	0	0	16512	478	17	3	132	3	TRAM1	8	71495450	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4446045	71495450	74868572	404	3508											
IMPA1	3612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	82588479	82588479	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaaatcatacctttttatttAcagcaaagccaattgaaaca	18	12	3	8	0	1	1	1	1	0	0	1	1	1	1	2	0	5	1	2	0	8	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144878	exon6	c.T515A	p.V172E	TTATTTACAGCAA	.	178	70	275	0	.	.	T	82588479	A	T	82588479	3	4	24	1	0	0	0	0	1	0	0	0	7766	391	14	5	515	5	IMPA1	8	82588479	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	11093029	82588479	63775543	405	3509											
PSKH2	85481	ucsc.edu;bcgsc.ca	37	chr8	87060845	87060845	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcatgaggtttcgggatatgGccctctggagattcttcatg	7	13	13	8	1	3	2	1	1	2	1	4	4	3	3	1	4	0	2	1	4	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSKH2	NM_033126	exon3	c.C1004T	p.A335V	GATATGGCCCTCT	.	43	5	79	0	.	79	A	87060845	G	A	87060845	3	1	24	1	0	0	0	0	1	0	0	0	12714	1203	42	3	155	3	PSKH2	8	87060845	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4472366	87060845	59303177	406	3510											
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	87454934	87454934	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagaacaactattgtctgcAgataaatccagcatcaacca	17	8	5	11	0	2	2	1	0	1	2	3	2	3	2	2	0	5	2	2	0	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007013	exon18	c.A1925G	p.Q642R	GTCTGCAGATAAA	.	48	22	99	0	.	.	G	87454934	A	G	87454934	3	3	24	1	0	0	0	0	1	0	0	0	17475	188	7	4	1987	4	WWP1	8	87454934	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	394089	87454934	58909088	407	3511											
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103299709	103299709	+	Missense_Mutation	SNP	T	T	C																															gacaacgcttctgcgcccacTagcattatcttggttgctgt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015902	exon37	c.A4909G	p.S1637G	GCCCACTAGCATT	.	27	10	26	0	.	.	C	103299709	T	C	103299709	3	2	24	1	0	0	0	0	1	0	0	0	16966	1522	53	4	3582	4	UBR5	8	103299709	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	15844775	103299709	43064313	408	3512	30	2									
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103299714	103299714	+	Missense_Mutation	SNP	T	T	G																															cgcttctgcgcccactagcaTtatcttggttgctgtggtta																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015902	exon37	c.A4904C	p.N1635T	CTAGCATTATCTT	.	26	10	26	0	.	.	G	103299714	T	G	103299714	3	3	24	1	0	0	0	0	1	0	0	0	16966	1493	52	4	3587	4	UBR5	8	103299714	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5	103299714	43064308	409	3513	30	2									
EIF3H	8667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	117767993	117767994	+	Missense_Mutation	DNP	GA	GA	TT																															ctgcgccggcggtggagctgGaagaggtggcagtagagccg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003756	exon1	c.T43A	p.S29N	AGCTGGAAGAGGT	.	32	11	52	0	.	.	TT	117767994	GA	TT	117767993	3	4	24	1	0	0	0	0	1	0	0	0	5046	1174	41	3	1046	3	EIF3H	8	117767993	Missense_Mutation	DNP	GA	TCGA-W5-AA39-01A-11D-A417-09	14468279	117767993	28596029	410	3514											
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	120754808	120754808	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcaagttccaaactccactgGggttttgtggtgggtgtgct	6	13	14	8	0	0	0	0	0	0	0	2	0	2	0	2	4	2	4	2	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003184	exon25	c.C3303G	p.P1101P	CCACTGGGGTTTT	.	93	18	151	0	.	.	C	120754808	G	C	120754808	2	2	24	1	0	0	0	0	0	0	0	1	15581	1219	43	5		5	TAF2	8	120754808	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2986815	120754808	25609214	411	3515											
MTBP	27085	hgsc.bcm.edu	37	chr8	121519076	121519076	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	atggattacccattggagatCttcaacctttaccgattcaa	12	13	6	10	1	3	1	2	0	1	1	3	4	3	2	3	2	3	0	3	2	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MTBP,NS,carcinoma,0,1	MTBP	NM_022045	exon16	c.C1858T	p.L620F	GGAGATCTTCAAC	.	66	3	83	0	.	0	T	121519076	C	T	121519076	3	4	24	1	0	0	0	0	1	0	0	0	9960	913	32	3	1920	3	MTBP	8	121519076	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	764268	121519076	24844946	412	3516											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	123965153	123965153	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagttccctgacgatgccgAggtttaccggctcatcgagg	7	9	12	13	4	1	1	1	1	0	0	3	4	2	1	4	3	2	3	4	3	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014943	exon3	c.A1403C	p.E468A	ATGCCGAGGTTTA	.	16	5	16	0	.	.	C	123965153	A	C	123965153	3	2	24	1	0	0	0	0	1	0	0	0	17734	304	11	4	1405	4	ZHX2	8	123965153	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2446077	123965153	22398869	413	3517											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	125110056	125110056	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agagtgaccatctggaacacTgaagatgtcattttagagga	14	10	11	6	0	2	5	1	2	1	3	2	7	2	7	1	2	1	0	1	2	3	2	rs372723456	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039112	exon37	c.T4815G	p.T1605T	GAACACTGAAGAT	.	36	16	50	0	.	.	G	125110056	T	G	125110056	2	3	24	1	0	0	0	0	0	0	0	1	5848	1567	55	4		4	FER1L6	8	125110056	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1144903	125110056	21253966	414	3518											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133858086	133858086	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accagatcctcttgcaagatTgccccaacttaaacgccaca	13	8	5	15	1	1	2	0	0	1	2	2	2	2	2	5	0	4	1	5	0	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016018	exon21	c.T2972C	p.L991S	CAAGATTGCCCCA	.	19	7	65	0	.	.	C	133858086	T	C	133858086	3	2	24	1	0	0	0	0	1	0	0	0	11880	1821	63	4	3146	4	PHF20L1	8	133858086	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	8748030	133858086	12505936	415	3519											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139815133	139815133	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	accacatcacctttctctccCttaggtccaggagcgccaac	9	9	6	17	1	2	0	1	0	1	0	5	1	4	1	5	2	2	0	5	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152888	exon11	c.G1539A	p.K513K	CTCTCCCTTAGGT	.	28	13	38	0	.	.	T	139815133	C	T	139815133	2	4	24	1	0	0	0	0	0	0	0	1	3704	680	24	3		3	COL22A1	8	139815133	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	5957047	139815133	6548889	416	3520											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	141415702	141415702	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gtaataggaaatcgcctcttTatacttgtcaattatgtctt	11	17	6	7	1	3	0	1	0	2	0	4	1	3	1	1	1	1	1	1	1	7	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031466	exon6	c.A1276T	p.K426X	CCTCTTTATACTT	.	38	16	67	0	.	.	A	141415702	T	A	141415702	4	1	24	1	0	0	0	0	0	1	0	0	16526	1763	61	5	2536	5	TRAPPC9	8	141415702	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1600569	141415702	4948320	417	3521											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	141669627	141669627	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gtcaatgacatcgagtaagtTtttggcatccacagccaggg	11	10	11	9	1	1	1	1	1	0	0	3	2	2	1	2	2	1	3	2	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005607	exon32	c.A3163C	p.N1055H	GTAAGTTTTTGGC	.	21	9	45	0	.	.	G	141669627	T	G	141669627	3	3	24	1	0	0	0	0	1	0	0	0	12812	1841	64	4	65	4	PTK2	8	141669627	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	253925	141669627	4694395	418	3522											
RHPN1	114822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144462004	144462004	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacatccaccggcaggtggcAgccgagtacaggctagtgca	10	5	13	13	2	0	0	0	0	0	0	1	1	1	0	3	4	3	5	3	4	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052924	exon9	c.A951G	p.A317A	GGTGGCAGCCGAG	.	37	20	45	0	.	.	G	144462004	A	G	144462004	2	3	24	1	0	0	0	0	0	0	0	1	13400	175	7	4		4	RHPN1	8	144462004	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2792377	144462004	1902018	419	3523											
PARP10	84875	broad.mit.edu	37	chr8	145059959	145059959	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggctggccaaggcacagcaAggctgtactgggagccccga	9	4	16	12	1	0	0	0	0	0	0	0	2	0	1	3	5	3	5	3	5	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PARP10	NM_032789	exon3	c.T366G	p.P122P	ACAGCAAGGCTGT	.	19	3	30	0	.	57	C	145059959	A	C	145059959	2	2	24	1	0	0	0	0	0	0	0	1	11502	59	3	4		4	PARP10	8	145059959	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	597955	145059959	1304063	420	3524											
CYC1	1537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	145151139	145151139	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acacggaggatgaagctaagGagctggctgcggaggtgtgg	10	6	19	6	2	0	1	0	1	0	0	0	5	0	5	0	7	3	3	0	7	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001916	exon3	c.G439T	p.E147X	GCTAAGGAGCTGG	.	22	7	38	0	.	.	T	145151139	G	T	145151139	4	4	24	1	0	0	0	0	0	1	0	0	4158	1175	41	3	449	3	CYC1	8	145151139	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	91180	145151139	1212883	421	3525											
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145541987	145541987	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtaggagaagagcttgaggaAgaggatggtgtgcgccatca	12	7	17	5	1	1	4	1	1	0	3	1	7	1	6	1	4	2	2	1	4	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012079	exon7	c.T613G	p.F205V	TGAGGAAGAGGAT	.	19	6	30	0	.	.	C	145541987	A	C	145541987	3	2	24	1	0	0	0	0	1	0	0	0	4485	72	3	4	897	4	DGAT1	8	145541987	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	390848	145541987	822035	422	3526											
CPSF1	29894	broad.mit.edu;bcgsc.ca	37	chr8	145618578	145618578	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	gtctccagcaagtcgtccagGatctgcaggggatggaaggg	9	7	16	9	1	2	0	0	0	2	0	5	3	3	3	2	5	2	2	2	5	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CPSF1	NM_013291	exon38	c.C4287T	p.I1429I	GTCCAGGATCTGC	.	30	10	33	1	.	92	A	145618578	G	A	145618578	2	1	24	1	0	0	0	0	0	0	0	1	3847	1164	41	3		3	CPSF1	8	145618578	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	76591	145618578	745444	423	3527											
CPSF1	29894	hgsc.bcm.edu;bcgsc.ca	37	chr8	145623960	145623960	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atcaggaatccgtgtctgcgGccgtcgtcgtctgcttcagg	5	11	13	12	5	4	0	2	0	2	0	7	1	5	1	2	3	2	1	2	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013291	exon18	c.C1707T	p.G569G	TCTGCGGCCGTCG	.	71	4	97	0	.	.	A	145623960	G	A	145623960	2	1	24	1	0	0	0	0	0	0	0	1	3847	1190	42	3		3	CPSF1	8	145623960	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5382	145623960	740062	424	3528											
PPP1R16A	84988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145725522	145725522	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acaccgacgggaacatgcccTatgacctgtgtgatgatgag	11	8	12	10	2	0	4	0	4	0	0	0	6	0	5	3	1	2	0	3	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032902	exon4	c.T520A	p.Y174N	ATGCCCTATGACC	.	42	14	66	0	.	.	A	145725522	T	A	145725522	3	1	24	1	0	0	0	0	1	0	0	0	12414	1522	53	5	534	5	PPP1R16A	8	145725522	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	101562	145725522	638500	425	3529											
C8orf33	65265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	146277985	146277985	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctccaggccctgggacatcTtgctggggaggcagcggcgg	5	7	17	12	2	2	0	0	0	2	0	3	2	2	2	2	7	2	2	2	7	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023080	exon2	c.T20C	p.L7P	GACATCTTGCTGG	.	78	28	91	0	.	.	C	146277985	T	C	146277985	3	2	24	1	0	0	0	0	1	0	0	0	2438	1609	56	4	26	4	C8orf33	8	146277985	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	552463	146277985	86037	426	3530											
IL33	90865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	6254494	6254494	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atggtaagatgttaatggtaAccctgagtcctacaaaagac	15	10	9	7	0	0	3	0	1	0	2	1	3	1	3	2	2	2	3	2	2	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033439	exon7	c.A553C	p.T185P	ATGGTAACCCTGA	.	34	16	73	0	.	.	C	6254494	A	C	6254494	3	2	24	1	0	0	0	0	1	0	0	0	7737	43	2	4	575	4	IL33	9	6254494	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09		6254494	134958937	427	3531											
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	12708981	12708981	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cttcctttccaaataggtcgGgagtttagtgtacctgagat	9	14	10	8	1	0	1	0	1	0	1	3	3	2	2	3	2	1	2	3	2	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000550	exon8	c.G1413T	p.R471R	AGGTCGGGAGTTT	.	30	17	40	0	.	.	T	12708981	G	T	12708981	2	4	24	1	0	0	0	0	0	0	0	1	16878	1219	43	3		3	TYRP1	9	12708981	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6454487	12708981	128504450	428	3532											
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	chr9	13175817	13175837	+	In_Frame_Del	DEL	GCATGACACACTCAGCATTAC	GCATGACACACTCAGCATTAC	-																															ttctttagatacattttgaaGcatgacacactcagcattac																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GCATGACACACTCAGCATTAC	GCATGACACACTCAGCATTAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001261406	exon21	c.2970_2990del	p.990_997del	TTTGAAGCATGAC	.	42	0	84	0	.	.	-	13175837	GCATGACACACTCAGCATTAC	-	13175817	7	5	24	1	0	1	0	1	0	0	0	0	9771	971	34	0	3240	0	MPDZ	9	13175817	In_Frame_Del	DEL	GCATGACACACTCAGCATTAC	TCGA-W5-AA39-01A-11D-A417-09	466836	13175817	128037614	429	3533											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	13176276	13176276	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcaggtgtgtagtcatttatAgtaaagccagaagcaggccc	12	9	12	8	0	1	1	1	0	0	1	1	1	1	1	2	2	2	4	2	2	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon20	c.T2790C	p.T930T	ATTTATAGTAAAG	.	44	22	81	0	.	.	G	13176276	A	G	13176276	2	3	24	1	0	0	0	0	0	0	0	1	9771	407	15	4		4	MPDZ	9	13176276	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	459	13176276	128037155	430	3534											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	13190124	13190124	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tatacttacctgataatctaAaatgctaaaaccaagtcctt	16	13	3	9	0	1	1	0	1	1	0	2	1	2	1	3	0	4	1	3	0	9	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon16	c.T2143G	p.L715V	AATCTAAAATGCT	.	36	16	51	0	.	.	C	13190124	A	C	13190124	3	2	24	1	0	0	0	0	1	0	0	0	9771	11	1	4	4106	4	MPDZ	9	13190124	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	13848	13190124	128023307	431	3535											
MPDZ	8777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	13190162	13190162	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctttgctccctttctccagcTctatgtgctgaatgccagcc	5	14	7	15	0	2	1	0	1	2	0	4	1	3	1	4	0	5	3	4	0	2	3	rs4740548	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon16	c.A2105G	p.E702G	TCCAGCTCTATGT	.	31	20	50	0	.	.	C	13190162	T	C	13190162	3	2	24	1	0	0	0	0	1	0	0	0	9771	1551	54	4	4144	4	MPDZ	9	13190162	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	38	13190162	128023269	432	3536											
TTC39B	158219	bcgsc.ca	37	chr9	15307282	15307282	+	Missense_Mutation	SNP	T	G	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cctgagtgcagctactcgatTtccccgcccccggagccggc	5	7	11	18	4	0	1	0	1	0	0	2	3	1	2	6	2	4	2	6	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TTC39B	NM_001168340	exon1	c.A40C	p.N14H	CTCGATTTCCCCG	.	14	8	20	0	.	83	G	15307282	G	G	15307282	3	3	24	1	0	0	0	0	1	0	0	0	16770	1841	64	4	2109	4	TTC39B	9	15307282	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2117120	15307282	125906149	433	3537											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	17273829	17273829	+	Missense_Mutation	SNP	A	A	C																															ttgagtaataaacagactgaActtatccagaaggatatgga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017738	exon6	c.A948C	p.E316D	GACTGAACTTATC	.	35	10	78	0	.	.	C	17273829	A	C	17273829	3	2	24	1	0	0	0	0	1	0	0	0	3662	40	2	4	970	4	CNTLN	9	17273829	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1966547	17273829	123939602	434	3538	31	2									
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	17273832	17273832	+	Silent	SNP	T	T	C																															agtaataaacagactgaactTatccagaaggatatggatat																								rs369987628		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017738	exon6	c.T951C	p.L317L	TGAACTTATCCAG	.	36	10	78	0	.	.	C	17273832	T	C	17273832	2	2	24	1	0	0	0	0	0	0	0	1	3662	1741	61	4		4	CNTLN	9	17273832	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3	17273832	123939599	435	3539	31	2									
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19316816	19316816	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaataaagccacagctgctGattcattgtttgaccgacag	13	10	8	10	1	1	2	1	2	0	0	1	3	1	2	2	0	3	3	2	0	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017925	exon12	c.G1786T	p.D596Y	GCTGCTGATTCAT	.	28	13	42	0	.	.	T	19316816	G	T	19316816	3	4	24	1	0	0	0	0	1	0	0	0	4463	1290	45	3	1108	3	DENND4C	9	19316816	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2042984	19316816	121896615	436	3540											
ACO1	48	hgsc.bcm.edu	37	chr9	32429463	32429463	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgcattggcaacagtGggcctttacctgaacctgtg	8	11	11	11	0	0	2	0	2	0	0	0	2	0	2	4	2	4	2	4	2	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002197	exon13	c.G1531T	p.G511W	AACAGTGGGCCTT	.	27	4	40	0	.	.	T	32429463	G	T	32429463	3	4	24	1	0	0	0	0	1	0	0	0	146	1348	47	3	1577	3	ACO1	9	32429463	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	13112647	32429463	108783968	437	3541											
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	33927945	33927945	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggaggtcgctgccgtggagaAggtggctgaggactggtggg	6	7	22	6	2	0	2	0	1	0	1	1	5	0	4	1	8	1	2	1	8	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018449	exon20	c.T2221G	p.F741V	TGGAGAAGGTGGC	.	24	10	47	0	.	.	C	33927945	A	C	33927945	3	2	24	1	0	0	0	0	1	0	0	0	16898	72	3	4	1178	4	UBAP2	9	33927945	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1498482	33927945	107285486	438	3542											
DNAI1	27019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	34500833	34500833	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtccgtcactgccctcTgctggtaagtataggcattg	6	12	11	12	1	2	0	1	0	1	0	3	0	3	0	3	2	2	4	3	2	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012144	exon11	c.T1015C	p.C339R	GCCCTCTGCTGGT	.	33	10	48	0	.	.	C	34500833	T	C	34500833	3	2	24	1	0	0	0	0	1	0	0	0	4636	1580	55	4	1057	4	DNAI1	9	34500833	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	572888	34500833	106712598	439	3543											
C9orf131	138724	broad.mit.edu;bcgsc.ca	37	chr9	35042287	35042287	+	Frame_Shift_Del	DEL	G	G	-																															gaggacctgcttggggctaaGggggatatggggcttctctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C9orf131	NM_001040410	exon1	c.36delG	p.K12fs	GGCTAAGGGGGAT	.	18	8	32	0	.	71	-	35042287	G	-	35042287	7	5	24	1	0	1	0	1	0	0	0	0	2475	991	35	0	54	0	C9orf131	9	35042287	Frame_Shift_Del	DEL	G	TCGA-W5-AA39-01A-11D-A417-09	541454	35042287	106171144	440	3544											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35792667	35792667	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgctgagcgctgtggacctcAagctgtaccatgaccccgac	8	7	11	15	3	1	2	1	2	0	0	1	4	1	3	4	1	3	4	4	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003995	exon1	c.A262G	p.K88E	GACCTCAAGCTGT	.	41	12	68	0	.	.	G	35792667	A	G	35792667	3	3	24	1	0	0	0	0	1	0	0	0	10643	131	5	4	264	4	NPR2	9	35792667	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	750380	35792667	105420764	441	3545											
RECK	8434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	36091179	36091179	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agggaactctgcactaaactTtacagcatgagctggggcaa	13	8	11	9	0	1	1	0	1	1	0	1	2	1	2	0	3	6	4	0	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021111	exon10	c.T924G	p.L308L	TAAACTTTACAGC	.	54	28	62	0	.	.	G	36091179	T	G	36091179	2	3	24	1	0	0	0	0	0	0	0	1	13252	1828	64	4		4	RECK	9	36091179	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	298512	36091179	105122252	442	3546											
C9orf85	138241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	74526743	74526743	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gacaagttcgataaaagtgtGcagaccaaggtaggaacctg	15	7	12	7	1	0	1	0	0	0	1	1	4	0	2	2	2	2	3	2	2	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182505	exon1	c.G93A	p.V31V	AAGTGTGCAGACC	.	34	16	47	0	.	.	A	74526743	G	A	74526743	2	1	24	1	0	0	0	0	0	0	0	1	2519	1306	46	3		3	C9orf85	9	74526743	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	38435564	74526743	66686688	443	3547											
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	82188691	82188691	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agtttcagtttttacaggctCaataccacaggtaacgatat	13	13	7	8	1	2	0	2	0	0	0	2	1	2	0	1	2	3	4	1	2	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007005	exon2	c.C133G	p.Q45E	CAGGCTCAATACC	.	41	14	51	0	.	.	G	82188691	C	G	82188691	3	3	24	1	0	0	0	0	1	0	0	0	16001	827	29	5	139	5	TLE4	9	82188691	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7661948	82188691	59024740	444	3548											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	90255340	90255340	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccctagccaaagatttcataAgaagacttctggtcaaggat	14	10	8	9	0	3	3	2	0	1	3	3	4	3	4	2	2	1	0	2	2	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004938	exon8	c.A757G	p.R253G	TTCATAAGAAGAC	.	38	17	60	0	.	.	G	90255340	A	G	90255340	3	3	24	1	0	0	0	0	1	0	0	0	4259	64	3	4	783	4	DAPK1	9	90255340	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8066649	90255340	50958091	445	3549											
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95005505	95005505	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaaactaacctttttgCgaagtttctgtatgcgattg	10	15	8	8	2	1	1	0	1	1	0	1	3	1	1	1	0	4	2	1	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013417	exon28	c.G2993T	p.R998L	TTTTTGCGAAGTT	.	13	6	27	0	.	.	A	95005505	C	A	95005505	3	1	24	1	0	0	0	0	1	0	0	0	7517	768	27	2	823	2	IARS	9	95005505	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4750165	95005505	46207926	446	3550											
ECM2	1842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95277473	95277473	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttaatgctataccactgagtAgagaataggagactaatgac	16	10	9	6	0	0	4	0	2	0	2	0	6	0	4	1	1	2	2	1	1	7	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001393	exon4	c.T494C	p.L165P	CTGAGTAGAGAAT	.	21	12	30	0	.	.	G	95277473	A	G	95277473	3	3	24	1	0	0	0	0	1	0	0	0	4924	420	15	4	1633	4	ECM2	9	95277473	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	271968	95277473	45935958	447	3551											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	112168774	112168774	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tcaccagggccagctcccgtGagtgggactcccggctggct	5	7	14	15	2	1	1	1	1	0	0	3	2	3	2	4	4	1	3	4	4	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002829	exon18	c.C1760T	p.S587L	TCCCGTGAGTGGG	.	31	13	51	0	.	.	A	112168774	G	A	112168774	3	1	24	1	0	0	0	0	1	0	0	0	12841	1294	45	3	1017	3	PTPN3	9	112168774	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	16891301	112168774	29044657	448	3552											
C9orf152	401546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	112963453	112963453	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attccggttccttgctgagtCatctgattggtttcaaacaa	9	15	8	9	1	3	2	2	2	1	0	5	2	5	2	2	2	2	3	2	2	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012993	exon2	c.G495T	p.M165I	CTGAGTCATCTGA	.	30	13	53	0	.	.	A	112963453	C	A	112963453	3	1	24	1	0	0	0	0	1	0	0	0	2481	826	29	3	228	3	C9orf152	9	112963453	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	794679	112963453	28249978	449	3553											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113205826	113205826	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcattttgttaaaacataccAggtatgggcaaaccaacaga	16	10	7	8	0	1	1	1	0	0	1	1	1	1	1	2	2	4	3	2	2	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153366	exon27	c.T4638A	p.P1546P	CATACCAGGTATG	.	20	5	31	0	.	.	T	113205826	A	T	113205826	2	4	24	1	0	0	0	0	0	0	0	1	15476	202	7	5		5	SVEP1	9	113205826	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	242373	113205826	28007605	450	3554											
SNX30	401548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	115598546	115598546	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgctgaccagaatgggcgAgtcagtcaagcacgtcactg	11	8	12	10	2	3	2	3	1	0	1	3	3	3	2	1	1	2	2	1	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012994	exon5	c.A671G	p.E224G	TGGGCGAGTCAGT	.	14	6	38	0	.	.	G	115598546	A	G	115598546	3	3	24	1	0	0	0	0	1	0	0	0	14954	304	11	4	689	4	SNX30	9	115598546	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2392720	115598546	25614885	451	3555											
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	116356551	116356551	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gccccaaggtggggggccctAcagagatgctccgaggcatg	8	5	16	12	1	0	1	0	0	0	1	1	3	1	1	4	5	2	2	4	5	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144489	exon1	c.A352G	p.T118A	GGCCCTACAGAGA	.	14	6	17	0	.	.	G	116356551	A	G	116356551	3	3	24	1	0	0	0	0	1	0	0	0	13356	391	14	4	3771	4	RGS3	9	116356551	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	758005	116356551	24856880	452	3556											
AMBP	259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116840382	116840382	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggcagccttacccgagagatAttgaagttttcctgcacttg	9	12	10	10	1	0	2	0	1	0	1	1	4	1	2	3	1	3	3	3	1	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001633	exon1	c.T108C	p.N36N	AGAGATATTGAAG	.	19	9	36	0	.	.	G	116840382	A	G	116840382	2	3	24	1	0	0	0	0	0	0	0	1	560	446	16	4		4	AMBP	9	116840382	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	483831	116840382	24373049	453	3557											
ORM1	5004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117086362	117086362	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaatgggaccatctccAgatacggtgagggccagccc	11	5	14	11	1	1	2	0	1	1	1	2	4	1	4	4	4	2	0	4	4	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000607	exon3	c.A322G	p.R108G	ATCTCCAGATACG	.	23	8	37	0	.	.	G	117086362	A	G	117086362	3	3	24	1	0	0	0	0	1	0	0	0	11314	180	7	4	332	4	ORM1	9	117086362	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	245980	117086362	24127069	454	3558											
ATP6V1G1	9550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117359886	117359886	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	gcagttgcagcactgaagtgGagaaggagacccaggagaag	14	4	16	7	0	0	4	0	1	0	3	0	7	0	4	1	3	2	4	1	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004888	exon3	c.G220A	p.E74K	GAAGTGGAGAAGG	.	52	16	54	0	.	.	A	117359886	G	A	117359886	3	1	24	1	0	0	0	0	1	0	0	0	1184	1175	41	3	230	3	ATP6V1G1	9	117359886	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	273524	117359886	23853545	455	3559											
TNC	3371	hgsc.bcm.edu	37	chr9	117797604	117797604	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagcagtcaagtctcttggaGaatcgaggtctggagaagac	12	9	13	7	1	3	3	1	0	2	3	5	6	3	3	0	3	1	1	0	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TNC,NS,malignant_melanoma,0,1	TNC	NM_002160	exon22	c.C5666A	p.S1889Y	CTTGGAGAATCGA	.	44	2	56	0	.	0	T	117797604	G	T	117797604	3	4	24	1	0	0	0	0	1	0	0	0	16330	942	33	3	967	3	TNC	9	117797604	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	437718	117797604	23415827	456	3560											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125760961	125760961	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	tttctcctggagacaaaagtCcgcgtttgctcacctaatga	10	12	8	11	2	2	2	1	1	1	1	4	3	3	2	3	1	1	2	3	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012197	exon10	c.C1290G	p.V430V	AAAAGTCCGCGTT	.	110	39	200	0	.	.	G	125760961	C	G	125760961	2	3	24	1	0	0	0	0	0	0	0	1	13016	842	30	5		5	RABGAP1	9	125760961	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7963357	125760961	15452470	457	3561											
GPR21	2844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125797792	125797792	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtattccaaagaggactaaAgcgcctctcaggggctatgt	11	10	11	9	1	1	1	1	0	1	1	3	2	2	2	2	3	1	2	2	3	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005294	exon2	c.A947G	p.K316R	GACTAAAGCGCCT	.	32	13	39	0	.	.	G	125797792	A	G	125797792	3	3	24	1	0	0	0	0	1	0	0	0	6721	72	3	4	949	4	GPR21	9	125797792	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	36831	125797792	15415639	458	3562											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125836700	125836700	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccatatcatcgacctgctttTatgtgaggtatgtatcagag	10	14	9	8	1	2	2	2	1	0	1	3	3	2	2	2	1	1	3	2	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012197	exon17	c.T2246C	p.L749S	TGCTTTTATGTGA	.	57	22	80	0	.	.	C	125836700	T	C	125836700	3	2	24	1	0	0	0	0	1	0	0	0	13016	1764	61	4	2308	4	RABGAP1	9	125836700	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	38908	125836700	15376731	459	3563											
DENND1A	57706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	126414328	126414328	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	caaatgatgagtatccggcgTtcgtacagcatactggcgta	11	10	11	9	4	0	2	0	2	0	0	2	2	1	2	1	2	3	5	1	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024820	exon9	c.A582T	p.E194D	CCGGCGTTCGTAC	.	21	7	38	0	.	.	A	126414328	T	A	126414328	3	1	24	1	0	0	0	0	1	0	0	0	4454	1722	60	5	2610	5	DENND1A	9	126414328	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	577628	126414328	14799103	460	3564											
NEK6	10783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	127113221	127113221	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatctggatgtccagcAcctgagcgtggatgcaccgt	8	9	12	12	2	1	1	0	1	1	0	2	3	2	3	3	2	4	3	3	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166171	exon11	c.A1039G	p.T347A	TCCAGCACCTGAG	.	23	12	29	0	.	.	G	127113221	A	G	127113221	3	3	24	1	0	0	0	0	1	0	0	0	10375	159	6	4	1156	4	NEK6	9	127113221	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	698893	127113221	14100210	461	3565											
GAPVD1	26130	bcgsc.ca	37	chr9	128094335	128094335	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaccaggcctcagtgttgtGtccggtatgtctgtcttgtt	5	15	11	10	1	3	0	1	0	2	0	4	0	4	0	3	2	0	3	3	2	1	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GAPVD1	NM_015635	exon12	c.G2304T	p.V768V	TGTTGTGTCCGGT	.	55	4	63	0	.	124	T	128094335	T	T	128094335	2	4	24	1	0	0	0	0	0	0	0	1	6279	1364	48	3		3	GAPVD1	9	128094335	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	981114	128094335	13119096	462	3566											
GARNL3	84253	broad.mit.edu	37	chr9	130026087	130026087	+	Translation_Start_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcagccatctctgtgaaatGgtggaagcagaatgccatta	12	11	10	8	0	2	2	1	1	1	1	3	3	2	3	2	2	3	1	2	2	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GARNL3	.	.	.	.	TGAAATGGTGGAA	.	12	5	8	0	.	83	A	130026087	G	A	130026087	1	1	24	1	0	0	0	0	0	0	0	0	6281	1363	47	3		3	GARNL3	9	130026087	Translation_Start_Site	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1931752	130026087	11187344	463	3567											
ODF2	4957	hgsc.bcm.edu	37	chr9	131256844	131256844	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagctccctgacatccTgaagatcacggaggcgaagc	11	5	12	13	2	1	3	1	2	0	1	3	5	3	4	2	2	3	3	2	2	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ODF2_ENST00000372814,NS,carcinoma,0,2	ODF2_ENST00000372814	NM_153435	exon17	c.T2000G	p.L667R	ACATCCTGAAGAT	.	7	2	19	0	.	0	G	131256844	T	G	131256844	3	3	24	1	0	0	0	0	1	0	0	0	10875	1580	55	4	1925	4	ODF2	9	131256844	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1230757	131256844	9956587	464	3568			1	3		4	3	61	N	T_A	1.438482e-06
ODF2	4957	hgsc.bcm.edu	37	chr9	131256878	131256878	+	Silent	SNP	A	A	G																															gcgaagctggctgagtgccaAgaccaactgcagggctatga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153435	exon17	c.A2034G	p.Q678Q	GTGCCAAGACCAA	.	12	6	17	0	.	.	G	131256878	A	G	131256878	2	3	24	1	0	0	0	0	0	0	0	1	10875	69	3	4		4	ODF2	9	131256878	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	34	131256878	9956553	465	3569	32	2	1	3		4	3	61	N	T_A	1.438482e-06
ODF2	4957	hgsc.bcm.edu;broad.mit.edu	37	chr9	131256884	131256884	+	Missense_Mutation	SNP	A	A	C																															ctggctgagtgccaagaccaActgcagggctatgagcggaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ODF2_ENST00000372814,NS,carcinoma,0,2	ODF2_ENST00000372814	NM_153435	exon17	c.A2040C	p.Q680H	AGACCAACTGCAG	.	13	4	16	0	.	0	C	131256884	A	C	131256884	3	2	24	1	0	0	0	0	1	0	0	0	10875	40	2	4	1965	4	ODF2	9	131256884	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6	131256884	9956547	466	3570	32	2	1	3		4	3	61	N	T_A	1.438482e-06
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	131256904	131256904	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	actgcagggctatgagcggaAgaacatcgacctcacagcca	13	5	11	12	2	1	2	1	1	0	1	2	4	1	3	2	2	4	2	2	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153435	exon17	c.A2060C	p.K687T	AGCGGAAGAACAT	.	14	6	17	0	.	.	C	131256904	A	C	131256904	3	2	24	1	0	0	0	0	1	0	0	0	10875	72	3	4	1985	4	ODF2	9	131256904	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	20	131256904	9956527	467	3571			1	3		4	3	61	N	T_A	1.438482e-06
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131864315	131864315	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaggggtgtcccgtcactgtGgtacacatccagctcaaaaa	11	8	11	11	1	2	0	2	0	0	0	4	1	4	0	2	3	2	2	2	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000755	exon6	c.C652A	p.H218N	CACTGTGGTACAC	.	16	7	43	0	.	.	T	131864315	G	T	131864315	3	4	24	1	0	0	0	0	1	0	0	0	3870	1348	47	3	1264	3	CRAT	9	131864315	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	607411	131864315	9349116	468	3572											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	135204542	135204542	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctcaatgttagatacagtcaAattttcatctaaattgatag	15	15	5	6	0	4	2	3	1	1	1	4	2	4	2	0	0	1	1	0	0	7	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015046	exon10	c.T2443G	p.L815V	CAGTCAAATTTTC	.	10	5	13	0	.	.	C	135204542	A	C	135204542	3	2	24	1	0	0	0	0	1	0	0	0	14195	11	1	4	5658	4	SETX	9	135204542	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3340227	135204542	6008889	469	3573											
C9orf96	169436	hgsc.bcm.edu;bcgsc.ca	37	chr9	136270413	136270413	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgtccagtagtatgaaGgccctgctccaggagatcaa	10	9	12	10	0	1	2	1	1	0	1	3	3	3	2	3	3	1	3	3	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153710	exon18	c.G1911A	p.K637K	TATGAAGGCCCTG	.	6	4	17	0	.	.	A	136270413	G	A	136270413	2	1	24	1	0	0	0	0	0	0	0	1	2526	991	35	3		3	C9orf96	9	136270413	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1065871	136270413	4943018	470	3574											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137650127	137650127	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcctggctgggttgccaggCgagaagggccacagggtgag	7	5	20	9	1	0	2	0	1	0	1	0	3	0	2	3	6	1	2	3	6	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000093	exon18	c.C1920T	p.G640G	GCCAGGCGAGAAG	.	17	11	23	0	.	.	T	137650127	C	T	137650127	2	4	24	1	0	0	0	0	0	0	0	1	3719	755	27	1		1	COL5A1	9	137650127	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1379714	137650127	3563304	471	3575											
LCN12	286256	broad.mit.edu	37	chr9	139848199	139848199	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgataccggcagcccAgcctgggcagttcactgtgg	6	9	14	12	1	1	1	1	1	0	0	1	1	1	1	3	3	4	4	3	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	LCN12	NM_178536	exon3	c.A299G	p.Q100R	CAGCCCAGCCTGG	.	38	5	61	0	.	11	G	139848199	A	G	139848199	3	3	24	1	0	0	0	0	1	0	0	0	8721	188	7	4	309	4	LCN12	9	139848199	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2198072	139848199	1365232	472	3576											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	387246	387246	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agcttaatggaacggcagaaGgcactggtggctgcgtgaga	11	7	16	7	2	0	2	0	1	0	2	0	4	0	3	0	5	3	4	0	5	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014974	exon29	c.C3477A	p.A1159A	GCAGAAGGCACTG	.	38	14	71	0	.	.	T	387246	G	T	387246	2	4	24	1	0	0	0	0	0	0	0	1	4557	987	35	3		3	DIP2C	10	387246	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09		387246	135147501	473	3577											
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	23393156	23393156	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agcagttctacgtcacaagaGaaaagggaacggaaccggta	16	5	12	8	3	2	1	1	0	1	1	2	4	2	3	1	3	4	3	1	3	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MSRB2,colon,carcinoma,0,1	MSRB2	NM_012228	exon2	c.G202C	p.E68Q	ACAAGAGAAAAGG	.	39	15	62	0	.	0	C	23393156	G	C	23393156	3	2	24	1	0	0	0	0	1	0	0	0	9936	943	33	5	208	5	MSRB2	10	23393156	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	23005910	23393156	112141591	474	3578											
ARMC4	55130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	28196701	28196701	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaactccatctaagcgatcaAttatcctatcgtggaaccca	13	10	6	12	2	2	0	1	0	1	0	5	3	4	1	3	1	3	0	3	1	6	3	rs150213638		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018076	exon17	c.T2501C	p.I834T	CGATCAATTATCC	.	59	20	71	0	0.000	.	G	28196701	A	G	28196701	3	3	24	1	0	0	0	0	1	0	0	0	952	101	4	4	649	4	ARMC4	10	28196701	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4803545	28196701	107338046	475	3579											
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	30315724	30315724	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggggggactctggggtgcagGcacttgcatcgggctcagca	6	7	18	10	1	2	0	1	0	1	0	3	1	2	1	0	7	3	5	0	7	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020848	exon3	c.C3353G	p.A1118G	GTGCAGGCACTTG	.	20	11	39	0	.	.	C	30315724	G	C	30315724	3	2	24	1	0	0	0	0	1	0	0	0	8276	1203	42	5	734	5	KIAA1462	10	30315724	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2119023	30315724	105219023	476	3580											
CREM	1390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	35500212	35500213	+	Nonsense_Mutation	DNP	GA	GA	CT																															cgggagtgtcgcaggaagaaGaaagaatatgtcaaatgtct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183011	exon7	c.A787T	p.KK311N*	AAGAAGAAAGAAT	.	38	11	84	0	.	.	CT	35500213	GA	CT	35500212	4	2	24	1	0	0	0	0	0	1	0	0	3891	933	33	5	1064	5	CREM	10	35500212	Nonsense_Mutation	DNP	GA	TCGA-W5-AA39-01A-11D-A417-09	5184488	35500212	100034535	477	3581											
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43601837	43601837	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cctgcaggacaccgtggtggCcacgctgcgtgtcttcgatg	5	9	14	13	4	1	0	0	0	1	0	2	2	1	1	3	3	2	2	3	3	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020630	exon5	c.C881T	p.A294V	TGGTGGCCACGCT	.	20	10	47	0	.	.	T	43601837	C	T	43601837	3	4	24	1	0	0	0	0	1	0	0	0	13287	739	26	3	899	3	RET	10	43601837	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	8101625	43601837	91932910	478	3582											
HNRNPF	3185	broad.mit.edu	37	chr10	43882519	43882526	+	Frame_Shift_Del	DEL	ACATTCCG	ACATTCCG	-																															gtcgccgtatctgtggtcatAcattccggagagacagtagc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HNRNPF	NM_001098204	exon4	c.807_814del	p.269_272del	GGTCATACATTCC	.	13	5	18	0	.	57	-	43882526	ACATTCCG	-	43882519	7	5	24	1	0	1	0	1	0	0	0	0	7306	391	14	0	437	0	HNRNPF	10	43882519	Frame_Shift_Del	DEL	ACATTCCG	TCGA-W5-AA39-01A-11D-A417-09	280682	43882519	91652228	479	3583											
TIMM23	100287932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	51592574	51592574	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atagtgcatagaggctggtaAgtgttagtcctgtcagacca	11	11	12	7	0	1	2	1	0	0	2	2	2	2	2	2	2	1	4	2	2	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006327	exon7	c.T560G	p.L187R	CTGGTAAGTGTTA	.	33	15	65	0	.	.	C	51592574	A	C	51592574	3	2	24	1	0	0	0	0	1	0	0	0	15971	72	3	4	73	4	TIMM23	10	51592574	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7710055	51592574	83942173	480	3584											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64966863	64966863	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttgttaattgtactacagatTacagtgctatccagaggaag	13	13	9	6	0	0	2	0	0	0	2	1	3	1	3	1	1	4	3	1	1	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A4566T	p.V1522V	ACAGATTACAGTG	.	29	17	89	0	.	.	A	64966863	T	A	64966863	2	1	24	1	0	0	0	0	0	0	0	1	7994	1741	61	5		5	JMJD1C	10	64966863	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	13374289	64966863	70567884	481	3585											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64966945	64966945	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctcactggcattactacttTtatactgagctgcagccaat	10	14	6	11	0	1	1	1	1	1	0	2	1	1	1	1	1	6	3	1	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A4484C	p.K1495T	CTACTTTTATACT	.	38	7	79	0	.	.	G	64966945	T	G	64966945	3	3	24	1	0	0	0	0	1	0	0	0	7994	1841	64	4	3206	4	JMJD1C	10	64966945	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	82	64966945	70567802	482	3586											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64968449	64968449	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tactggatccacaaaatgccTatgtaagtgacaatcttttc	13	13	6	9	0	1	1	0	1	1	0	3	2	2	2	2	1	2	1	2	1	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A2980C	p.R994R	AATGCCTATGTAA	.	38	11	47	0	.	.	G	64968449	T	G	64968449	2	3	24	1	0	0	0	0	0	0	0	1	7994	1521	53	4		4	JMJD1C	10	64968449	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1504	64968449	70566298	483	3587											
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	68686686	68686686	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttttatttccaggtttcaaTgtaattaggctactgagcgg	9	17	9	6	1	1	1	1	1	0	0	2	1	2	1	1	3	2	3	1	3	5	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178011	exon2	c.T12C	p.N4N	TTTCAATGTAATT	.	36	19	51	0	.	.	C	68686686	T	C	68686686	2	2	24	1	0	0	0	0	0	0	0	1	9086	1461	51	4		4	LRRTM3	10	68686686	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3718237	68686686	66848061	484	3588											
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70243272	70243272	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aatacagcgaatgtaattaaGagataaaccacgatagagtc	19	8	8	6	2	0	2	0	0	0	2	1	5	0	2	1	0	3	1	1	0	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152707	exon9	c.C916T	p.L306F	AATTAAGAGATAA	.	52	20	69	0	.	.	A	70243272	G	A	70243272	3	1	24	1	0	0	0	0	1	0	0	0	14533	942	33	3	86	3	SLC25A16	10	70243272	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1556586	70243272	65291475	485	3589											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	73569791	73569791	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gaggagttcatccacctgctCtccaacatcactggggccat	9	9	9	14	0	3	0	2	0	1	0	5	2	4	1	4	3	2	2	4	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022124	exon59	c.C8937T	p.L2979L	CCTGCTCTCCAAC	.	13	6	10	0	.	.	T	73569791	C	T	73569791	2	4	24	1	0	0	0	0	0	0	0	1	3130	900	32	3		3	CDH23	10	73569791	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3326519	73569791	61964956	486	3590											
DNAJC9	23234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75006528	75006528	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtccactgttccctgcTcatcgtacactgctctctgt	4	14	6	17	2	2	0	1	0	1	0	7	0	4	0	3	0	3	4	3	0	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015190	exon2	c.A239G	p.E80G	CCCTGCTCATCGT	.	48	14	67	0	.	.	C	75006528	T	C	75006528	3	2	24	1	0	0	0	0	1	0	0	0	4683	1551	54	4	559	4	DNAJC9	10	75006528	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1436737	75006528	60528219	487	3591											
MRPS16	51021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75011619	75011619	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cgagtttttctccatgactgTtgggcaatggatcataggag	9	13	12	7	1	2	1	1	1	1	0	3	4	2	3	1	3	0	3	1	3	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016065	exon2	c.A176C	p.N59T	TGACTGTTGGGCA	.	47	21	76	0	.	.	G	75011619	T	G	75011619	3	3	24	1	0	0	0	0	1	0	0	0	9875	1725	60	4	245	4	MRPS16	10	75011619	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5091	75011619	60523128	488	3592											
PPP3CB	5532	broad.mit.edu	37	chr10	75255630	75255630	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggggcggtgcagcccgggcCggctccggggcggccatgct	2	4	21	14	5	0	0	0	0	0	0	1	0	1	0	4	8	3	3	4	8	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PPP3CB	NM_001142354	exon1	c.G18T	p.P6P	CCGGGCCGGCTCC	.	17	10	16	0	.	68	A	75255630	C	A	75255630	2	1	24	1	0	0	0	0	0	0	0	1	12447	639	23	2		2	PPP3CB	10	75255630	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	244011	75255630	60279117	489	3593											
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	79011006	79011006	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccgatgctgagagcaaagacTaagacaacctgtaaaagaag	18	5	10	8	1	0	4	0	1	0	4	0	6	0	4	2	0	3	3	2	0	6	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001161352	exon3	c.A549C	p.L183F	AAAGACTAAGACA	.	42	14	76	0	.	.	G	79011006	T	G	79011006	3	3	24	1	0	0	0	0	1	0	0	0	8117	1519	53	4	3437	4	KCNMA1	10	79011006	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3755376	79011006	56523741	490	3594											
RPS24	6229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	79814760	79814760	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cttcctgcctctctggtctgGgccactaatgtcactgccat	5	13	8	15	0	3	0	1	0	2	0	5	0	4	0	4	2	2	0	4	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001142285	exon5	c.G862T	p.G288C	GGTCTGGGCCACT	.	24	12	23	0	.	.	T	79814760	G	T	79814760	3	4	24	1	0	0	0	0	1	0	0	0	13687	1232	43	3	919	3	RPS24	10	79814760	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	803754	79814760	55719987	491	3595											
MMRN2	79812	bcgsc.ca	37	chr10	88703690	88703690	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caccaagctcctggaagtcaGccctggccacggcactgtcc	8	6	10	17	1	1	0	1	0	0	0	3	1	3	1	5	3	2	2	5	3	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MMRN2	NM_024756	exon6	c.C851T	p.A284V	AAGTCAGCCCTGG	.	10	3	21	0	.	49	A	88703690	A	A	88703690	3	1	24	1	0	0	0	0	1	0	0	0	9720	971	34	3	2006	3	MMRN2	10	88703690	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	8888930	88703690	46831057	492	3596											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	89720806	89720806	+	Frame_Shift_Del	DEL	T	T	-																															aaggaatatctagtacttacTttaacaaaaaatgatcttga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,6	.	NM_000314	exon8	c.956delC	p.T319fs	ACTTACTTTAACA	.	61	16	112	0	.	3652	-	89720806	T	-	89720806	7	5	24	1	0	1	0	1	0	0	0	0	12787	1596	56	0	987	0	PTEN	10	89720806	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	1017116	89720806	45813941	493	3597	33	2									
PTEN	5728	hgsc.bcm.edu;bcgsc.ca	37	chr10	89720807	89720807	+	Missense_Mutation	SNP	T	T	G																															aggaatatctagtacttactTtaacaaaaaatgatcttgac																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PTEN,caecum,carcinoma,-1,1	PTEN	NM_000314	exon8	c.T958G	p.L320V	CTTACTTTAACAA	.	60	19	114	0	.	-1	G	89720807	T	G	89720807	3	3	24	1	0	0	0	0	1	0	0	0	12787	1838	64	4	988	4	PTEN	10	89720807	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1	89720807	45813940	494	3598	33	2									
PCGF5	84333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	93021177	93021177	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	actaaaacttccaagttcttAtgaggtaagttaaataatat	17	14	5	5	0	1	1	0	1	1	0	2	1	2	1	1	1	1	3	1	1	9	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001256549	exon7	c.A569G	p.Y190C	GTTCTTATGAGGT	.	157	63	224	0	.	.	G	93021177	A	G	93021177	3	3	24	1	0	0	0	0	1	0	0	0	11624	449	16	4	591	4	PCGF5	10	93021177	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3300370	93021177	42513570	495	3599											
PPP1R3C	5507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	93390426	93390426	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgagcacttccagtcattcTgtgatttggctttgtgtttt	5	19	10	7	0	2	2	1	2	1	0	3	2	3	2	1	1	1	3	1	1	0	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005398	exon2	c.A212G	p.Q71R	TCATTCTGTGATT	.	51	29	88	0	.	.	C	93390426	T	C	93390426	3	2	24	1	0	0	0	0	1	0	0	0	12422	1580	55	4	745	4	PPP1R3C	10	93390426	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	369249	93390426	42144321	496	3600											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	94223499	94223499	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttaccttacctctgtcaaaaTtatattgctgggagatgatt	11	16	7	7	0	2	2	1	1	1	1	2	3	2	2	2	1	3	1	2	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004969	exon21	c.A2750G	p.N917S	TCAAAATTATATT	.	46	21	79	0	.	.	C	94223499	T	C	94223499	3	2	24	1	0	0	0	0	1	0	0	0	7537	1493	52	4	329	4	IDE	10	94223499	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	833073	94223499	41311248	497	3601											
SORBS1	0	bcgsc.ca	37	chr10	97116445	97116445	+	Missense_Mutation	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tggtgaactgcatcccagccTttcttgagagaggacagggc	9	9	13	10	0	1	3	0	2	1	1	2	5	2	4	2	3	3	1	2	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SORBS1	.	.	.	.	CCAGCCTTTCTTG	.	14	4	26	0	.	185	C	97116445	C	C	97116445	3	2	24	1	0	0	0	0	1	0	0	0	14981	1624	56	4		4	SORBS1	10	97116445	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2892946	97116445	38418302	498	3602											
C10orf62	414157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99350107	99350107	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atgctgcagcgggccatagcTtaccagcactcaggtcacct	9	8	10	14	1	2	0	2	0	0	0	2	0	2	0	3	2	6	4	3	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001009997	exon1	c.T453C	p.A151A	CATAGCTTACCAG	.	35	15	50	0	.	.	C	99350107	T	C	99350107	2	2	24	1	0	0	0	0	0	0	0	1	1615	1596	56	4		4	C10orf62	10	99350107	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2233662	99350107	36184640	499	3603											
HPSE2	60495	broad.mit.edu	37	chr10	100904026	100904026	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agattactgtaagtattggaGaattgctcctttagaagaac	14	13	9	5	0	0	4	0	0	0	4	1	5	1	4	1	1	3	3	1	1	7	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HPSE2	NM_001166246	exon3	c.C579A	p.F193L	ATTGGAGAATTGC	.	12	3	19	0	.	203	T	100904026	G	T	100904026	3	4	24	1	0	0	0	0	1	0	0	0	7386	933	33	3	1277	3	HPSE2	10	100904026	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1553919	100904026	34630721	500	3604											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101544402	101544402	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtccggaggcagacctgcCactttgttttgagcaaactg	9	10	11	11	1	0	2	0	1	0	1	1	3	1	3	3	2	3	3	3	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000392	exon2	c.C71A	p.P24Q	ACCTGCCACTTTG	.	28	13	40	0	.	.	A	101544402	C	A	101544402	3	1	24	1	0	0	0	0	1	0	0	0	53	594	21	3	77	3	ABCC2	10	101544402	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	640376	101544402	33990345	501	3605											
MGEA5	10724	broad.mit.edu;bcgsc.ca	37	chr10	103577755	103577755	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctctcccgctcctccaacgTcgcttgactctccttctgca	4	12	6	19	3	3	1	0	1	3	0	8	1	5	1	4	0	2	4	4	0	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MGEA5	NM_001142434	exon1	c.A25G	p.T9A	CCAACGTCGCTTG	.	20	5	28	0	.	53	C	103577755	T	C	103577755	3	2	24	1	0	0	0	0	1	0	0	0	9604	1667	58	4	2789	4	MGEA5	10	103577755	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2033353	103577755	31956992	502	3606											
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111643856	111643856	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagtcctatgattgcgtaggAgaaaaatactggattgtgct	12	13	11	5	1	0	2	0	1	0	1	1	4	1	3	1	2	3	2	1	2	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001167604	exon9	c.T799C	p.S267P	CGTAGGAGAAAAA	.	36	15	40	0	.	.	G	111643856	A	G	111643856	3	3	24	1	0	0	0	0	1	0	0	0	17502	304	11	4	1253	4	XPNPEP1	10	111643856	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8066101	111643856	23890891	503	3607											
ACSL5	51703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	114168254	114168254	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tatgacaccttgggaccagaAgccatcgtacatattgtcaa	13	10	8	10	1	1	2	1	1	0	1	2	3	1	3	3	1	2	1	3	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016234	exon6	c.A675C	p.E225D	ACCAGAAGCCATC	.	57	23	93	0	.	.	C	114168254	A	C	114168254	3	2	24	1	0	0	0	0	1	0	0	0	180	69	3	4	697	4	ACSL5	10	114168254	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2524398	114168254	21366493	504	3608											
NHLRC2	374354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115657896	115657896	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggtccaaagaggtgacatttTatggatagccatggcaggga	12	9	14	6	0	0	2	0	1	0	1	1	4	1	4	2	5	1	1	2	5	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198514	exon6	c.T1067C	p.L356S	ACATTTTATGGAT	.	108	45	229	0	.	.	C	115657896	T	C	115657896	3	2	24	1	0	0	0	0	1	0	0	0	10453	1764	61	4	1089	4	NHLRC2	10	115657896	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1489642	115657896	19876851	505	3609											
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	121587136	121587136	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaagttccatggtccaggtTgctagtattacccaagctgg	9	11	11	10	1	0	0	0	0	0	0	2	1	2	0	3	3	3	5	3	3	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014937	exon20	c.T3243A	p.V1081V	CCAGGTTGCTAGT	.	56	22	87	0	.	.	A	121587136	T	A	121587136	2	1	24	1	0	0	0	0	0	0	0	1	7802	1799	63	5		5	INPP5F	10	121587136	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5929240	121587136	13947611	506	3610											
ATE1	11101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	123670610	123670610	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acactgtatatccagtttatTtatcaatgcaaagtcacccg	13	13	5	10	1	2	0	2	0	0	0	3	0	3	0	2	0	1	3	2	0	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001976	exon5	c.A394G	p.N132D	GTTTATTTATCAA	.	26	6	31	0	.	.	C	123670610	T	C	123670610	3	2	24	1	0	0	0	0	1	0	0	0	1077	1841	64	4	1327	4	ATE1	10	123670610	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2083474	123670610	11864137	507	3611											
IKZF5	64376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124758099	124758099	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctgagtcaggtattcctgaaAatctttcacgaagtccaaag	13	11	8	9	1	3	2	2	2	1	0	5	3	5	2	2	1	0	1	2	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001271840	exon3	c.T43A	p.F15I	CCTGAAAATCTTT	.	60	22	78	0	.	.	T	124758099	A	T	124758099	3	4	24	1	0	0	0	0	1	0	0	0	7662	14	1	5	1228	5	IKZF5	10	124758099	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1087489	124758099	10776648	508	3612											
STK32C	282974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	134039116	134039116	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagtcggtcaggtgtgcAtgtcctgtgcagagaggggt	7	11	17	6	1	1	2	1	1	0	1	3	3	2	2	1	4	2	2	1	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173575	exon6	c.T687G	p.H229Q	GTGTGCATGTCCT	.	17	7	32	0	.	.	C	134039116	A	C	134039116	3	2	24	1	0	0	0	0	1	0	0	0	15355	214	8	4	801	4	STK32C	10	134039116	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	9281017	134039116	1495631	509	3613											
PAOX	196743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	135193724	135193724	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cggagatggcgactctgttcTacggcctgatagaccagacc	9	8	12	12	3	2	4	0	1	2	3	2	6	2	4	3	3	1	1	3	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_207128	exon2	c.T403C	p.Y135H	CTGTTCTACGGCC	.	43	21	77	0	.	.	C	135193724	T	C	135193724	3	2	24	1	0	0	0	0	1	0	0	0	11470	1522	53	4	409	4	PAOX	10	135193724	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1154608	135193724	341023	510	3614											
CYP2E1	1571	bcgsc.ca	37	chr10	135340926	135340949	+	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	-	-																															gccctcggagtcaccgtggcCctgctggtgtgggcggcctt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCTGCTGGTGTGGGCGGCCTTCCT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CYP2E1	NM_000773	exon1	c.27_50del	p.9_17del	CGTGGCCCTGCTG	.	25	6	72	0	.	69	-	135340949	-	-	135340926	7	5	24	1	0	1	0	1	0	0	0	0	4193	610	22	0	29	0	CYP2E1	10	135340926	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	TCGA-W5-AA39-01A-11D-A417-09	147202	135340926	193821	511	3615											
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	488603	488603	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	acccttgagtggctgtccctGaagacgtacaagtggcaggg	9	8	14	10	1	0	3	0	2	0	1	1	3	1	3	2	3	1	3	2	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030783	exon8	c.G810A	p.L270L	GTCCCTGAAGACG	.	19	8	35	0	.	.	A	488603	G	A	488603	2	1	24	1	0	0	0	0	0	0	0	1	12786	1277	45	3		3	PTDSS2	11	488603	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09		488603	134517913	512	3616											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1263842	1263842	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctggatcctcacaaagccgaCcacaacagccactacgactg	13	5	7	16	2	1	0	1	0	0	0	2	3	2	1	4	1	4	0	4	1	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002458	exon31	c.C5732G	p.T1911S	AGCCGACCACAAC	.	53	24	78	0	.	.	G	1263842	C	G	1263842	3	3	24	1	0	0	0	0	1	0	0	0	10027	507	18	5	5863	5	MUC5B	11	1263842	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	775239	1263842	133742674	513	3617											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1280229	1280229	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgtgtacctgcctctctgggGacacccaggacccaacggtg	7	8	12	14	1	1	0	0	0	1	0	2	2	1	2	4	4	3	1	4	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002458	exon44	c.G16651T	p.D5551Y	TCTGGGGACACCC	.	57	20	82	0	.	.	T	1280229	G	T	1280229	3	4	24	1	0	0	0	0	1	0	0	0	10027	1174	41	3	16834	3	MUC5B	11	1280229	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	16387	1280229	133726287	514	3618											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	3774554	3774554	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcagtttcttacctgttccaAatcctgcaccaagcccagtt	9	12	6	14	0	1	0	0	0	1	0	3	0	3	0	5	0	3	5	5	0	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005387	exon11	c.T1310G	p.F437C	GTTCCAAATCCTG	.	42	19	89	0	.	.	C	3774554	A	C	3774554	3	2	24	1	0	0	0	0	1	0	0	0	10821	14	1	4	4256	4	NUP98	11	3774554	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2494325	3774554	131231962	515	3619											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	3774605	3774605	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caggtgctggtttacttccaAaaatactattcccactggta	11	13	7	10	0	0	0	0	0	0	0	2	0	2	0	2	3	3	3	2	3	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005387	exon11	c.T1259G	p.F420C	CTTCCAAAAATAC	.	59	29	111	0	.	.	C	3774605	A	C	3774605	3	2	24	1	0	0	0	0	1	0	0	0	10821	14	1	4	4307	4	NUP98	11	3774605	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	51	3774605	131231911	516	3620											
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4870320	4870320	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagagagaaggtagacagcaAtgaggggcaatgtccaccag	15	4	14	8	0	0	4	0	1	0	3	1	5	1	4	2	3	1	3	2	3	4	1	rs139571388	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004758	exon1	c.T119G	p.I40S	ACAGCAATGAGGG	.	25	8	44	0	.	.	C	4870320	A	C	4870320	3	2	24	1	0	0	0	0	1	0	0	0	11153	101	4	4	855	4	OR51S1	11	4870320	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1095715	4870320	130136196	517	3621											
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6637270	6637270	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggtagggcggaactggtgtcTtccagagacagaccaacacc	11	6	13	11	1	1	2	0	0	1	2	2	4	2	3	3	4	2	1	3	4	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000391	exon9	c.A1111C	p.R371R	GGTGTCTTCCAGA	.	40	17	63	0	.	.	G	6637270	T	G	6637270	2	3	24	1	0	0	0	0	0	0	0	1	16472	1617	56	4		4	TPP1	11	6637270	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1766950	6637270	128369246	518	3622											
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6943064	6943064	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gaatattcacctacatgcgaCcaaactccaagactacaaaa	18	7	4	12	1	1	1	1	0	0	1	2	3	2	1	3	0	4	0	3	0	8	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004684	exon1	c.C832T	p.P278S	ATGCGACCAAACT	.	41	17	57	0	.	.	T	6943064	C	T	6943064	3	4	24	1	0	0	0	0	1	0	0	0	11043	507	18	3	834	3	OR2D3	11	6943064	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	305794	6943064	128063452	519	3623											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	7669733	7669733	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgggtatcttctggccacAccttattgacagccacccct	8	11	8	14	0	2	1	0	1	2	0	2	1	2	1	5	2	1	1	5	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003621	exon18	c.A1762C	p.T588P	GGCCACACCTTAT	.	10	7	31	0	.	.	C	7669733	A	C	7669733	3	2	24	1	0	0	0	0	1	0	0	0	12359	159	6	4	1828	4	PPFIBP2	11	7669733	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	726669	7669733	127336783	520	3624											
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	9047293	9047293	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggaaccctctagcgctgttcCcttcattggacttgaactga	8	12	9	12	1	2	2	1	2	1	0	3	4	3	4	2	2	3	2	2	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020974	exon20	c.G2639A	p.G880E	CTGTTCCCTTCAT	.	46	20	58	0	.	.	T	9047293	C	T	9047293	3	4	24	1	0	0	0	0	1	0	0	0	13999	623	22	3	288	3	SCUBE2	11	9047293	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1377560	9047293	125959223	521	3625											
SBF2	81846	hgsc.bcm.edu	37	chr11	9801363	9801363	+	RNA	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tggataatctttttccatcaGaataatgctgtgtgctccct	9	16	7	9	0	2	1	1	0	1	1	4	2	4	2	2	1	2	2	2	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCATCAGAATAAT	.	18	4	15	0	.	.	A	9801363	G	A	9801363	1	1	24	0	1	0	0	0	0	0	0	0	13912	957	33	3		3	SBF2	11	9801363	RNA	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	754070	9801363	125205153	522	3626											
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10785962	10785962	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccctccattttagactTggaaacctaggggaggctaa	10	10	12	9	0	0	1	0	0	0	1	1	3	1	3	3	5	2	1	3	5	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014633	exon11	c.T1392G	p.L464L	TAGACTTGGAAAC	.	42	17	62	0	.	.	G	10785962	T	G	10785962	2	3	24	1	0	0	0	0	0	0	0	1	4048	1799	63	4		4	CTR9	11	10785962	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	984599	10785962	124220554	523	3627											
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10789426	10789426	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atggggtcctgggcagaagaAgtttgagaggatattaaaac	14	9	14	4	0	0	3	0	1	0	3	1	5	1	4	1	4	1	2	1	4	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014633	exon14	c.A1760C	p.K587T	AGAAGAAGTTTGA	.	57	25	89	0	.	.	C	10789426	A	C	10789426	3	2	24	1	0	0	0	0	1	0	0	0	4048	72	3	4	1814	4	CTR9	11	10789426	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3464	10789426	124217090	524	3628											
CALCB	797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	15096669	15096669	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaggacgcgcgcctcctgcTggctgcactggtgcaggact	6	7	15	13	3	0	1	0	0	0	1	1	3	1	3	2	4	3	4	2	4	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000728	exon3	c.T149G	p.L50R	TCCTGCTGGCTGC	.	31	13	48	0	.	.	G	15096669	T	G	15096669	3	3	24	1	0	0	0	0	1	0	0	0	2594	1580	55	4	155	4	CALCB	11	15096669	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4307243	15096669	119909847	525	3629											
FSHB	2488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	30255127	30255127	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aactcctcaggatctggtgtAtaaggacccagccaggccca	11	7	10	13	0	2	0	1	0	1	0	3	2	3	2	4	4	2	1	4	4	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000510	exon3	c.A170G	p.Y57C	TGGTGTATAAGGA	.	48	12	70	0	.	.	G	30255127	A	G	30255127	3	3	24	1	0	0	0	0	1	0	0	0	6107	449	16	4	176	4	FSHB	11	30255127	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	15158458	30255127	104751389	526	3630											
TCP11L1	55346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33094146	33094146	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttgctattaaatttgctcGcctggtcaactataacaaga	13	13	7	8	1	1	1	1	0	0	1	2	1	1	1	1	1	4	3	1	1	7	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145541	exon10	c.G1454A	p.R485H	TTGCTCGCCTGGT	.	45	10	67	0	.	.	A	33094146	G	A	33094146	3	1	24	1	0	0	0	0	1	0	0	0	15773	1087	38	1	1488	1	TCP11L1	11	33094146	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2839019	33094146	101912370	527	3631											
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	34074072	34074072	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gccgcgggagccggggccgcCgcgccggcttctcagcaccc	3	3	16	19	7	1	0	1	0	1	0	2	1	1	1	6	4	2	2	6	4	0	1	rs370335951	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_203364	exon2	c.C105T	p.A35A	GGCCGCCGCGCCG	.	32	15	42	0	.	.	T	34074072	C	T	34074072	2	4	24	1	0	0	0	0	0	0	0	1	2653	639	23	1		1	CAPRIN1	11	34074072	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	979926	34074072	100932444	528	3632											
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47256385	47256385	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgattggttcctggccacAgcctccgtagatcaaacagt	9	11	10	11	1	1	2	1	1	0	1	3	2	3	2	4	2	2	2	4	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000107	exon6	c.A780G	p.T260T	GGCCACAGCCTCC	.	33	16	35	0	.	.	G	47256385	A	G	47256385	2	3	24	1	0	0	0	0	0	0	0	1	4347	175	7	4		4	DDB2	11	47256385	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	13182313	47256385	87750131	529	3633											
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47256429	47256429	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aatttgggacctgcgccaggTtagagggaaagccagcttcc	10	8	13	10	1	0	1	0	0	0	1	1	3	1	3	4	3	3	2	4	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000107	exon6	c.T824G	p.V275G	GCCAGGTTAGAGG	.	30	11	35	0	.	.	G	47256429	T	G	47256429	3	3	24	1	0	0	0	0	1	0	0	0	4347	1725	60	4	846	4	DDB2	11	47256429	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	44	47256429	87750087	530	3634											
RAPSN	5913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47464331	47464331	+	Silent	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tagttgttgacaagctctgcCgccttgcaggggaagaacag	10	9	13	9	1	1	2	0	1	1	1	1	3	1	3	2	2	4	4	2	2	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032645	exon3	c.G567C	p.A189A	CTCTGCCGCCTTG	.	25	12	47	0	.	.	G	47464331	C	G	47464331	2	3	24	1	0	0	0	0	0	0	0	1	13103	639	23	5		5	RAPSN	11	47464331	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	207902	47464331	87542185	531	3635											
PTPMT1	114971	hgsc.bcm.edu	37	chr11	47591273	47591273	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtggaagagactaggagtcGagcagctgcggctcagcaca	12	5	15	9	2	1	1	1	0	0	1	2	5	1	3	0	3	4	4	0	3	2	1	rs200800213	bycluster;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PTPMT1,NS,carcinoma,0,1	PTPMT1	NM_175732	exon3	c.G277T	p.E93X	GGAGTCGAGCAGC	.	33	3	48	0	.	0	T	47591273	G	T	47591273	4	4	24	1	0	0	0	0	0	1	0	0	12828	1059	37	2	392	2	PTPMT1	11	47591273	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	126942	47591273	87415243	532	3636											
KBTBD4	55709	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47594521	47594521	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaattggtaagcagcaccttAatacctcttgtgacagttac	13	12	7	9	0	1	1	0	1	1	0	1	1	1	1	2	1	4	4	2	1	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KBTBD4	NM_018095	exon4	c.T1566G	p.I522M	CACCTTAATACCT	.	28	6	51	0	.	55	C	47594521	A	C	47594521	3	2	24	1	0	0	0	0	1	0	0	0	8039	358	13	4	42	4	KBTBD4	11	47594521	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3248	47594521	87411995	533	3637											
C11orf31	280636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57509283	57509283	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctccgtctctccctagcaCtagctgacgcgtctatgggc	5	11	9	16	3	3	1	0	1	3	0	6	1	4	1	2	1	2	2	2	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.T42S	.	.	CTAGCACTAGCTG	.	45	6	79	0	.	.	G	57509283	C	G	57509283	3	3	24	1	0	0	0	0	1	0	0	0	1642	565	20	5	131	5	C11orf31	11	57509283	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	9914762	57509283	77497233	534	3638											
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57569260	57569260	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cggatcaatactactgggctCctttggcccagcatgagcga	9	9	11	12	2	1	1	1	1	0	0	2	3	2	2	2	3	4	2	2	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001085461	exon7	c.C1012T	p.P338S	TGGGCTCCTTTGG	.	20	9	29	0	.	.	T	57569260	C	T	57569260	3	4	24	1	0	0	0	0	1	0	0	0	4043	855	30	3	1030	3	CTNND1	11	57569260	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	59977	57569260	77437256	535	3639											
STX3	6809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	59554567	59554567	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacatgtagaggaggctaagAaactctacagtatcattctc	15	10	8	8	0	3	2	1	0	2	2	4	3	3	3	0	2	3	3	0	2	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004177	exon3	c.A172T	p.K58X	GCTAAGAAACTCT	.	29	6	64	0	.	.	T	59554567	A	T	59554567	4	4	24	1	0	0	0	0	0	1	0	0	15402	247	9	5	182	5	STX3	11	59554567	Nonsense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1985307	59554567	75451949	536	3640											
FADS1	3992	broad.mit.edu	37	chr11	61584238	61584238	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgggggccatagctggcCtggcgacgccgcgcgccggg	3	4	20	14	7	0	0	0	0	0	0	1	1	0	0	4	6	1	1	4	6	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FADS1	NM_013402	exon1	c.G164T	p.R55M	GCTGGCCTGGCGA	.	14	5	22	0	.	19	A	61584238	C	A	61584238	3	1	24	1	0	0	0	0	1	0	0	0	5396	681	24	3	1389	3	FADS1	11	61584238	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2029671	61584238	73422278	537	3641											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62299800	62299800	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctacatcaggcatggagaTctttggtgtcttgacactca	10	13	9	9	0	5	2	2	1	3	1	5	3	5	2	0	3	1	1	0	3	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001620	exon5	c.A2089T	p.I697F	TGGAGATCTTTGG	.	28	15	48	0	.	.	A	62299800	T	A	62299800	3	1	24	1	0	0	0	0	1	0	0	0	411	1435	50	5	15703	5	AHNAK	11	62299800	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	715562	62299800	72706716	538	3642											
BSCL2	26580	hgsc.bcm.edu	37	chr11	62460156	62460156	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagttctctctatagtctgcGtagagttccacctccagcag	8	12	9	12	1	3	1	0	0	3	1	6	2	5	1	3	0	2	4	3	0	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BSCL2,NS,carcinoma,0,1	BSCL2	NM_001122955	exon5	c.C744T	p.Y248Y	GTCTGCGTAGAGT	.	20	2	36	0	.	0	A	62460156	G	A	62460156	2	1	24	1	0	0	0	0	0	0	0	1	1529	1140	40	1		1	BSCL2	11	62460156	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	160356	62460156	72546360	539	3643											
SLC3A2	6520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62649510	62649510	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctccaaggaagattttgaCagtctcttgcaatcggctaa	11	11	10	9	1	1	2	0	1	1	1	4	3	2	3	1	3	1	3	1	3	4	4	rs138578664	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012662	exon5	c.C876A	p.D292E	TTTTGACAGTCTC	.	44	16	60	0	.	.	A	62649510	C	A	62649510	3	1	24	1	0	0	0	0	1	0	0	0	14682	477	17	3	991	3	SLC3A2	11	62649510	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	189354	62649510	72357006	540	3644											
FERMT3	83706	ucsc.edu;bcgsc.ca	37	chr11	63986820	63986820	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ggaggagatgatggtgtttgCcgccctgcaggtaccaggcg	7	8	17	9	2	0	2	0	1	0	1	0	4	0	3	3	5	3	3	3	5	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FERMT3	NM_031471	exon7	c.C884T	p.A295V	TGTTTGCCGCCCT	.	32	4	28	0	.	51	T	63986820	C	T	63986820	3	4	24	1	0	0	0	0	1	0	0	0	5852	739	26	3	906	3	FERMT3	11	63986820	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1337310	63986820	71019696	541	3645											
NUDT22	84304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63994325	63994325	+	Silent	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ttccgcctgcactcagccacCctggcgcctattggctctcg	4	10	9	18	3	2	0	1	0	1	0	4	0	3	0	5	2	2	2	5	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001128613	exon2	c.C201G	p.T67T	AGCCACCCTGGCG	.	58	23	69	0	.	.	G	63994325	C	G	63994325	2	3	24	1	0	0	0	0	0	0	0	1	10787	610	22	5		5	NUDT22	11	63994325	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7505	63994325	71012191	542	3646											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64514795	64514795	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcaatgacctgccgaagcTcaggaatgcgatcgtagtac	11	8	11	11	3	2	1	2	1	0	0	3	4	2	2	2	1	4	4	2	1	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005609	exon18	c.A2213C	p.E738A	CGAAGCTCAGGAA	.	21	13	23	0	.	.	G	64514795	T	G	64514795	3	3	24	1	0	0	0	0	1	0	0	0	12914	1551	54	4	327	4	PYGM	11	64514795	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	520470	64514795	70491721	543	3647											
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64679638	64679638	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcccctgcctgcagctgctGgttcaggtcctgctcaatca	5	11	10	15	0	3	0	3	0	0	0	4	0	4	0	4	2	6	5	4	2	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015104	exon8	c.C1006G	p.Q336E	GCTGCTGGTTCAG	.	29	15	56	0	.	.	C	64679638	G	C	64679638	3	2	24	1	0	0	0	0	1	0	0	0	1092	1357	47	5	4946	5	ATG2A	11	64679638	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	164843	64679638	70326878	544	3648											
CAPN1	823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64950279	64950279	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccgccatgagaatgccatcaAgtacctgggccaggattatg	11	8	11	11	1	1	1	1	1	0	1	1	3	1	2	5	2	2	1	5	2	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001198869	exon2	c.A107C	p.K36T	CCATCAAGTACCT	.	18	10	48	0	.	.	C	64950279	A	C	64950279	3	2	24	1	0	0	0	0	1	0	0	0	2640	72	3	4	109	4	CAPN1	11	64950279	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	270641	64950279	70056237	545	3649											
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65416935	65416935	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttcctgcacagccagaacTcgctgtcaccacgcaggtgc	9	7	10	15	2	1	1	1	0	0	1	3	1	2	1	3	1	4	4	3	1	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006747	exon10	c.T2509G	p.S837A	CAGAACTCGCTGT	.	31	13	31	0	.	.	G	65416935	T	G	65416935	3	3	24	1	0	0	0	0	1	0	0	0	14383	1551	54	4	2543	4	SIPA1	11	65416935	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	466656	65416935	69589581	546	3650											
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65820161	65820161	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caggtaatcgcgaggagctgGtggagcggctgcagagctac	9	6	17	9	3	0	1	0	0	0	1	1	4	0	3	0	5	5	5	0	5	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006842	exon2	c.G151A	p.V51M	GAGCTGGTGGAGC	.	30	11	49	0	.	.	A	65820161	G	A	65820161	3	1	24	1	0	0	0	0	1	0	0	0	14205	1261	44	3	157	3	SF3B2	11	65820161	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	403226	65820161	69186355	547	3651											
B3GNT1	11041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66114615	66114615	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtaggccagcaccgtggcCagctgcgcctcctccttggt	4	8	13	16	3	0	0	0	0	0	0	2	0	2	0	6	3	3	3	6	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006876	exon1	c.G402T	p.L134L	CGTGGCCAGCTGC	.	16	8	22	0	.	.	A	66114615	C	A	66114615	2	1	24	1	0	0	0	0	0	0	0	1	1254	581	21	3		3	B3GNT1	11	66114615	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	294454	66114615	68891901	548	3652											
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66203493	66203493	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aagggtcacttcttggcagcTtcttcttgggcagccaaatc	8	12	10	11	0	4	0	1	0	3	0	5	0	4	0	1	3	2	3	1	3	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016050	exon5	c.A564C	p.E188D	GGCAGCTTCTTCT	.	28	8	40	0	.	.	G	66203493	T	G	66203493	3	3	24	1	0	0	0	0	1	0	0	0	9825	1606	56	4	18	4	MRPL11	11	66203493	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	88878	66203493	68803023	549	3653											
RBM4	5936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66410945	66410945	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	acgaatgcacgtgcagttgtCcaccagccggcttaggactg	9	8	12	12	3	0	0	0	0	0	0	1	2	1	1	3	2	3	4	3	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002896	exon3	c.C437T	p.S146F	AGTTGTCCACCAG	.	33	14	43	0	.	.	T	66410945	C	T	66410945	3	4	24	1	0	0	0	0	1	0	0	0	13186	855	30	3	443	3	RBM4	11	66410945	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	207452	66410945	68595571	550	3654											
CARNS1	57571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67186527	67186527	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacaaggcagttgctggcccAgcagggtggtgtggctgtgc	6	8	18	9	0	0	0	0	0	0	0	0	1	0	0	1	5	3	5	1	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166222	exon5	c.A665G	p.Q222R	TGGCCCAGCAGGG	.	29	12	52	0	.	.	G	67186527	A	G	67186527	3	3	24	1	0	0	0	0	1	0	0	0	2674	188	7	4	679	4	CARNS1	11	67186527	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	775582	67186527	67819989	551	3655											
NDUFV1	4723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67378874	67378874	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ggaccgacttggggccccagGgggtgtcacgggcggctggg	4	5	21	11	3	1	0	1	0	0	0	1	2	1	1	3	8	0	1	3	8	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007103	exon7	c.G914C	p.G305A	CCCCAGGGGGTGT	.	32	15	52	0	.	.	C	67378874	G	C	67378874	3	2	24	1	0	0	0	0	1	0	0	0	10346	1246	43	5	940	5	NDUFV1	11	67378874	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	192347	67378874	67627642	552	3656											
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	70332549	70332549	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cggtctcggcccaggtcggtCtcgtacttgttctccgtctc	2	13	11	15	5	4	0	0	0	4	0	9	0	4	0	2	4	1	2	2	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133266	exon10	c.G2085A	p.E695E	GTCGGTCTCGTAC	.	30	13	35	0	.	.	T	70332549	C	T	70332549	2	4	24	1	0	0	0	0	0	0	0	1	14320	912	32	3		3	SHANK2	11	70332549	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2953675	70332549	64673967	553	3657											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu	37	chr11	71939417	71939417	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcagggtgtgcctgtgcgccGcttccagaccctgggtgagc	4	8	16	13	2	0	2	0	1	0	1	1	2	1	2	4	2	3	2	4	2	0	1	rs142516692		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	INPPL1,NS,carcinoma,0,1	INPPL1	NM_001567	exon3	c.G272A	p.R91H	TGCGCCGCTTCCA	.	29	3	35	0	0.000	0	A	71939417	G	A	71939417	3	1	24	1	0	0	0	0	1	0	0	0	7805	1087	38	1	282	1	INPPL1	11	71939417	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1606868	71939417	63067099	554	3658											
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73427372	73427372	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tctttctgttctgacatcatCaatccactttgtagtttgct	7	19	5	10	0	5	1	2	1	3	0	6	1	6	1	1	0	1	4	1	0	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002869	exon5	c.G325C	p.D109H	CATCATCAATCCA	.	52	26	81	0	.	.	G	73427372	C	G	73427372	3	3	24	1	0	0	0	0	1	0	0	0	13003	826	29	5	317	5	RAB6A	11	73427372	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1487955	73427372	61579144	555	3659											
DNAJB13	374407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73679407	73679407	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggccccaacatcatcccAgcagacatcattttcatcgt	11	9	6	15	1	3	1	3	0	0	1	5	1	4	1	3	1	2	1	3	1	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153614	exon6	c.A624G	p.P208P	CATCCCAGCAGAC	.	48	12	43	0	.	.	G	73679407	A	G	73679407	2	3	24	1	0	0	0	0	0	0	0	1	4645	175	7	4		4	DNAJB13	11	73679407	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	252035	73679407	61327109	556	3660											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76885944	76885944	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtgctgctgccaggtgtgaAgccggcctacaagcaggtac	8	8	14	11	1	0	1	0	1	0	0	0	1	0	1	3	3	7	4	3	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001127179	exon17	c.A2078C	p.K693T	GTGTGAAGCCGGC	.	35	13	25	0	.	.	C	76885944	A	C	76885944	3	2	24	1	0	0	0	0	1	0	0	0	10130	72	3	4	2140	4	MYO7A	11	76885944	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3206537	76885944	58120572	557	3661											
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76954813	76954813	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttttagcaagggtttcaatGgatactaaacggcccacatg	12	12	9	8	1	1	0	1	0	0	0	1	1	1	1	1	3	3	2	1	3	6	6	rs199737312		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182833	exon12	c.C1167T	p.S389S	TTCAATGGATACT	.	68	22	138	0	0.001	.	A	76954813	G	A	76954813	2	1	24	1	0	0	0	0	0	0	0	1	6368	1335	47	3		3	GDPD4	11	76954813	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	68869	76954813	58051703	558	3662											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877696	82877696	+	Missense_Mutation	SNP	A	A	G																															tgaaccaaaggagaatgtagAaaactggcaaagttccaagt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,bladder,carcinoma,+1,1	PCF11_ENST00000298281	NM_015885	exon5	c.A1757G	p.E586G	ATGTAGAAAACTG	.	77	30	124	0	.	+1	G	82877696	A	G	82877696	3	3	24	1	0	0	0	0	1	0	0	0	11620	246	9	4	1775	4	PCF11	11	82877696	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	5922883	82877696	52128820	559	3663	34	4	2	4		6	3	60	N	AA_A	1.390559e-06
PCF11	51585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	82877699	82877699	+	Missense_Mutation	SNP	A	A	C																															accaaaggagaatgtagaaaActggcaaagttccaagtctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,colon,carcinoma,0,2	PCF11_ENST00000298281	NM_015885	exon5	c.A1760C	p.N587T	TAGAAAACTGGCA	.	77	31	126	0	.	0	C	82877699	A	C	82877699	3	2	24	1	0	0	0	0	1	0	0	0	11620	43	2	4	1778	4	PCF11	11	82877699	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3	82877699	52128817	560	3664	34	4	2	4		6	3	60	N	AA_A	1.390559e-06
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877706	82877707	+	Missense_Mutation	DNP	AA	AA	CC																															gagaatgtagaaaactggcaAagttccaagtctgccaaaag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,NS,carcinoma,0,2	PCF11_ENST00000298281	NM_015885	exon5	c.A1768C	p.QS589HR	TGGCAAAGTTCCA	.	94	37	130	0	.	0	CC	82877707	AA	CC	82877706	3	2	24	1	0	0	0	0	1	0	0	0	11620	11	1	4	1785	4	PCF11	11	82877706	Missense_Mutation	DNP	AA	TCGA-W5-AA39-01A-11D-A417-09	7	82877706	52128810	561	3665	34	4	2	4		6	3	60	N	AA_A	1.390559e-06
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877714	82877714	+	Missense_Mutation	SNP	A	A	C																															agaaaactggcaaagttccaAgtctgccaaaagatggaaat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1775C	p.K592T	GTTCCAAGTCTGC	.	107	48	137	0	.	.	C	82877714	A	C	82877714	3	2	24	1	0	0	0	0	1	0	0	0	11620	72	3	4	1793	4	PCF11	11	82877714	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	8	82877714	52128802	562	3666	34	4	2	4		6	3	60	N	AA_A	1.390559e-06
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877732	82877732	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caagtctgccaaaagatggaAatctggttgggaagaaaata	17	8	11	5	0	2	2	0	0	2	2	2	4	2	4	1	3	1	1	1	3	8	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1793C	p.K598T	GATGGAAATCTGG	.	124	44	162	0	.	.	C	82877732	A	C	82877732	3	2	24	1	0	0	0	0	1	0	0	0	11620	14	1	4	1811	4	PCF11	11	82877732	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	18	82877732	52128784	563	3667			2	4		6	3	60	N	AA_A	1.390559e-06
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877755	82877755	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctggttgggaagaaaataaaAggtatgatgttaacatttta	16	13	10	2	0	0	2	0	1	0	1	0	3	0	3	0	3	1	3	0	3	8	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1816C	p.S606R	AATAAAAGGTATG	.	130	62	166	0	.	.	C	82877755	A	C	82877755	3	2	24	1	0	0	0	0	1	0	0	0	11620	86	3	4	1834	4	PCF11	11	82877755	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	23	82877755	52128761	564	3668			2	4		6	3	60	N	AA_A	1.390559e-06
ANKRD42	338699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82935942	82935942	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccttcactgtttcaaattccTagtcagtagaatgagcagtg	11	13	8	9	0	3	2	3	1	0	1	4	2	4	2	2	0	1	3	2	0	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182603	exon6	c.T548G	p.L183R	AATTCCTAGTCAG	.	81	34	112	0	.	.	G	82935942	T	G	82935942	3	3	24	1	0	0	0	0	1	0	0	0	664	1522	53	4	570	4	ANKRD42	11	82935942	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	58187	82935942	52070574	565	3669											
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	85630420	85630420	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacttgggccccctgggagTgaagcttatgagtgtggaga	10	9	15	7	0	0	3	0	2	0	1	0	5	0	4	2	3	2	1	2	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173556	exon12	c.T1202A	p.V401E	TGGGAGTGAAGCT	.	70	30	87	0	.	.	A	85630420	T	A	85630420	3	1	24	1	0	0	0	0	1	0	0	0	2877	1696	59	5	1244	5	CCDC83	11	85630420	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2694478	85630420	49376096	566	3670											
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	93469419	93469419	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agtaatatcctcttcttctaAgtatacactcagtcttacag	12	15	4	10	0	5	0	1	0	4	0	6	0	6	0	1	0	2	2	1	0	6	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024116	exon6	c.T745G	p.L249V	CTTCTAAGTATAC	.	64	25	105	0	.	.	C	93469419	A	C	93469419	3	2	24	1	0	0	0	0	1	0	0	0	15579	69	3	4	95	4	TAF1D	11	93469419	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7838999	93469419	41537097	567	3671											
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	93886741	93886741	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atattgctgggcggctgttcAgcagaagaactcactgcaga	11	9	12	9	1	2	3	2	0	0	3	2	3	2	3	0	2	4	5	0	2	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015368	exon2	c.A266T	p.Q89L	CTGTTCAGCAGAA	.	27	14	43	0	.	.	T	93886741	A	T	93886741	3	4	24	1	0	0	0	0	1	0	0	0	11467	188	7	5	272	5	PANX1	11	93886741	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	417322	93886741	41119775	568	3672											
BIRC3	330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102198793	102198793	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tacattttaggtgtgagtacTtgataagaattaaaggacag	15	13	10	3	0	0	3	0	2	0	1	0	4	0	4	0	2	2	1	0	2	7	7	rs373892386		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001165	exon4	c.T964G	p.L322V	GAGTACTTGATAA	.	42	14	52	0	.	.	G	102198793	T	G	102198793	3	3	24	1	0	0	0	0	1	0	0	0	1435	1606	56	4	974	4	BIRC3	11	102198793	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	8312052	102198793	32807723	569	3673											
ELMOD1	55531	hgsc.bcm.edu	37	chr11	107518233	107518234	+	In_Frame_Ins	INS	-	-	GGATTTCTA																															caatactccactggaatctcINSggatttctaagcagtggtgt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018712	exon7	c.460_461insGGATTTCTA	p.R154delinsRISR	GAATCTCGGATTT	.	54	0	98	0	.	.	GGATTTCTA	107518234	-	GGATTTCTA	107518233	7	5	24	1	0	1	1	0	0	0	0	0	5096	875	31	0	482	0	ELMOD1	11	107518233	In_Frame_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	5319440	107518233	27488283	570	3674											
RDX	5962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	110124822	110124822	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gattctcagacgaggtgcatAaaacacaaaatcctaaacat	18	8	6	9	1	1	1	1	0	1	1	3	3	2	1	1	1	3	1	1	1	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RDX	NM_001260493	exon9	c.T808A	p.Y270N	GTGCATAAAACAC	.	40	18	71	0	.	59	T	110124822	A	T	110124822	3	4	24	1	0	0	0	0	1	0	0	0	13250	362	13	5	967	5	RDX	11	110124822	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2606589	110124822	24881694	571	3675											
C11orf88	399949	broad.mit.edu;bcgsc.ca	37	chr11	111385536	111385536	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acgggacccagcgaagaaccTagcggccgaaaagagtccca	14	2	12	13	4	0	2	0	0	0	2	1	5	1	3	4	2	3	0	4	2	5	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C11orf88	NM_001100388	exon1	c.T27A	p.P9P	AGAACCTAGCGGC	.	39	14	42	1	.	37	A	111385536	T	A	111385536	2	1	24	1	0	0	0	0	0	0	0	1	1675	1509	53	5		5	C11orf88	11	111385536	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1260714	111385536	23620980	572	3676											
C11orf52	91894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111796729	111796729	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atgaacgggtgttacagcagCaagggtctcaagagaggagt	13	7	15	6	1	1	2	1	1	1	1	2	4	1	3	0	3	4	3	0	3	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080659	exon4	c.C178A	p.Q60K	CAGCAGCAAGGGT	.	26	6	53	0	.	.	A	111796729	C	A	111796729	3	1	24	1	0	0	0	0	1	0	0	0	1652	711	25	3	192	3	C11orf52	11	111796729	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	411193	111796729	23209787	573	3677											
DLAT	1737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111933226	111933226	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tggcttgctgagtttagaaaGtaccttgaaaaacctatcac	13	12	8	8	0	1	3	1	2	0	1	1	3	1	3	2	1	3	4	2	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	DLAT	NM_001931	exon14	c.G1911A	p.K637K	TAGAAAGTACCTT	.	90	35	156	1	.	39	A	111933226	G	A	111933226	2	1	24	1	0	0	0	0	0	0	0	1	4577	1020	36	3		3	DLAT	11	111933226	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	136497	111933226	23073290	574	3678											
BCO2	83875	hgsc.bcm.edu	37	chr11	112065435	112065435	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcacatcctcattatgacctGgatggaacagcatacaatat	14	10	7	10	0	1	1	1	1	0	0	2	3	2	3	2	2	3	2	2	2	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BCO2,NS,carcinoma,0,1	BCO2	NM_031938	exon5	c.G693T	p.L231L	TGACCTGGATGGA	.	33	2	58	0	.	0	T	112065435	G	T	112065435	2	4	24	1	0	0	0	0	0	0	0	1	1383	1335	47	3		3	BCO2	11	112065435	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	132209	112065435	22941081	575	3679											
TTC12	54970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113230696	113230696	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagcagaaggtgcctgtCtttactaaacagccaggatg	11	9	13	8	0	1	2	0	1	1	1	1	3	1	3	2	3	5	1	2	3	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017868	exon18	c.C1580A	p.S527Y	GCCTGTCTTTACT	.	29	18	24	0	.	.	A	113230696	C	A	113230696	3	1	24	1	0	0	0	0	1	0	0	0	16741	913	32	3	1646	3	TTC12	11	113230696	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1165261	113230696	21775820	576	3680											
USP28	57646	hgsc.bcm.edu	37	chr11	113683165	113683165	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgattatagatataggccCaatagtgtccagcatttgct	11	14	9	7	0	0	2	0	1	0	1	1	2	1	2	2	1	2	3	2	1	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	USP28,NS,carcinoma,0,1	USP28	NM_020886	exon16	c.G1805T	p.W602L	TAGGCCCAATAGT	.	24	2	31	0	.	0	A	113683165	C	A	113683165	3	1	24	1	0	0	0	0	1	0	0	0	17118	595	21	3	1468	3	USP28	11	113683165	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	452469	113683165	21323351	577	3681											
ZBTB16	7704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	114121244	114121244	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	atcccgcccgactggaggatAgagaagacgtacctctacct	11	7	10	13	3	1	2	0	0	1	2	2	6	2	4	4	2	2	1	4	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006006	exon7	c.A1989T	p.I663I	GAGGATAGAGAAG	.	17	10	32	0	.	.	T	114121244	A	T	114121244	2	4	24	1	0	0	0	0	0	0	0	1	17585	410	15	5		5	ZBTB16	11	114121244	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	438079	114121244	20885272	578	3682											
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117030734	117030734	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tggtgcagttaatgcagcaaTatgaggtaaaggtggaaggg	13	9	16	3	0	0	1	0	1	0	0	0	2	0	2	0	5	3	5	0	5	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184747	exon3	c.T166G	p.Y56D	CAGCAATATGAGG	.	46	15	69	0	.	.	G	117030734	T	G	117030734	3	3	24	1	0	0	0	0	1	0	0	0	11432	1406	49	4	172	4	PAFAH1B2	11	117030734	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2909490	117030734	17975782	579	3683											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118365076	118365076	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggaggacagccagaaattaAaaaagccaacagcatggtca	18	5	10	8	0	1	1	1	0	0	1	1	3	1	3	2	3	4	1	2	3	5	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001197104	exon17	c.A5252T	p.K1751I	AAATTAAAAAAGC	.	30	18	61	0	.	.	T	118365076	A	T	118365076	3	4	24	1	0	0	0	0	1	0	0	0	9668	14	1	5	5309	5	MLL	11	118365076	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1334342	118365076	16641440	580	3684											
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118983266	118983266	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaagacagttgtgcccaCtcaccccagggccagggaaa	11	5	11	14	1	1	1	1	0	0	1	2	3	1	2	4	2	1	1	4	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014807	exon9	c.C1159T	p.L387F	TGCCCACTCACCC	.	13	7	33	0	.	.	T	118983266	C	T	118983266	3	4	24	1	0	0	0	0	1	0	0	0	2167	565	20	3	1193	3	C2CD2L	11	118983266	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	618190	118983266	16023250	581	3685											
NLRX1	79671	broad.mit.edu;bcgsc.ca	37	chr11	119050924	119050924	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atgccctggatgaggtgaacTtggcctcctgccagctagat	8	10	12	11	0	0	3	0	2	0	1	1	4	1	4	4	3	4	1	4	3	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	NLRX1	NM_024618	exon7	c.T2194G	p.L732V	GTGAACTTGGCCT	.	8	3	21	0	.	128	G	119050924	T	G	119050924	3	3	24	1	0	0	0	0	1	0	0	0	10532	1606	56	4	2216	4	NLRX1	11	119050924	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	67658	119050924	15955592	582	3686											
USP2	9099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119243852	119243852	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ttgttggtcactccataaggGaatccgctgcccccgctgag	7	10	11	13	2	1	1	1	1	0	0	3	2	3	2	4	2	1	3	4	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004205	exon2	c.C339T	p.F113F	ATAAGGGAATCCG	.	18	8	36	0	.	.	A	119243852	G	A	119243852	2	1	24	1	0	0	0	0	0	0	0	1	17111	1165	41	3		3	USP2	11	119243852	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	192928	119243852	15762664	583	3687											
TBCEL	219899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120957511	120957511	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgaactgatcactaaataTgggaagttggagcctttggc	12	11	11	7	0	1	2	1	2	0	0	1	4	1	4	1	3	2	1	1	3	5	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001130047	exon8	c.T981C	p.Y327Y	TAAATATGGGAAG	.	36	5	55	0	.	.	C	120957511	T	C	120957511	2	2	24	1	0	0	0	0	0	0	0	1	15695	1471	51	4		4	TBCEL	11	120957511	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1713659	120957511	14049005	584	3688											
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	122931947	122931947	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtttccctgatcattggcaAttatctcgacttttccgtgc	6	16	8	11	2	2	1	1	1	1	0	5	2	4	1	2	2	1	2	2	2	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006597	exon2	c.T86G	p.I29S	TTGGCAATTATCT	.	21	13	33	0	.	.	C	122931947	A	C	122931947	3	2	24	1	0	0	0	0	1	0	0	0	7459	101	4	4	1886	4	HSPA8	11	122931947	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1974436	122931947	12074569	585	3689											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	133802005	133802005	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cggccgtccttgttccacttGaccacggtggccggtggttc	3	11	13	14	4	0	1	0	1	0	0	3	1	2	1	5	5	0	2	5	5	0	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014987	exon8	c.C1071T	p.V357V	CCACTTGACCACG	.	20	11	39	0	.	.	A	133802005	G	A	133802005	2	1	24	1	0	0	0	0	0	0	0	1	7650	1277	45	3		3	IGSF9B	11	133802005	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	10870058	133802005	1204511	586	3690											
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7177759	7177759	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctgtgctggaggagagaaggGcatggatagctgtaaagggg	11	7	19	4	0	0	1	0	0	0	1	0	5	0	4	0	6	2	4	0	6	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_201442	exon12	c.G1871A	p.G624D	AGAAGGGCATGGA	.	46	27	94	0	.	.	A	7177759	G	A	7177759	3	1	24	1	0	0	0	0	1	0	0	0	1987	1203	42	3	1913	3	C1S	12	7177759	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09		7177759	126674136	587	3691											
A2M	2	broad.mit.edu	37	chr12	9264989	9264989	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atacctgtctgccctggtttGtagattgatttgtctgtctg	5	18	10	8	0	3	2	0	1	3	1	3	2	3	2	2	1	2	2	2	1	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	A2M	NM_000014	exon3	c.C414A	p.Y138X	TGGTTTGTAGATT	.	61	3	91	0	.	180	T	9264989	G	T	9264989	4	4	24	1	0	0	0	0	0	1	0	0	4	1372	48	3	4146	3	A2M	12	9264989	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2087230	9264989	124586906	588	3692											
TAS2R9	50835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	10962375	10962375	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tagaagatactgaggcaagaAgtaaaccagagacttgaatt	18	8	10	5	0	0	6	0	2	0	4	0	7	0	6	1	1	2	2	1	1	8	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023917	exon1	c.T300G	p.T100T	GCAAGAAGTAAAC	.	56	17	72	0	.	.	C	10962375	A	C	10962375	2	2	24	1	0	0	0	0	0	0	0	1	15645	59	3	4		4	TAS2R9	12	10962375	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1697386	10962375	122889520	589	3693											
TAS2R9	50835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	10962389	10962389	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcaagaagtaaaccagagacTtgaattattggcaaatgtcc	16	9	9	7	0	0	3	0	1	0	2	1	4	1	3	2	1	1	3	2	1	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023917	exon1	c.A286C	p.S96R	AGAGACTTGAATT	.	54	19	66	0	.	.	G	10962389	T	G	10962389	3	3	24	1	0	0	0	0	1	0	0	0	15645	1609	56	4	656	4	TAS2R9	12	10962389	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	14	10962389	122889506	590	3694											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12279634	12279634	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctgactcacctggaagagAtcctgacaaagaacttgggt	12	9	10	10	0	1	4	1	2	0	2	3	6	3	5	3	2	1	0	3	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon20	c.T4303A	p.S1435T	GAAGAGATCCTGA	.	34	14	76	0	.	.	T	12279634	A	T	12279634	3	4	24	1	0	0	0	0	1	0	0	0	9007	333	12	5	554	5	LRP6	12	12279634	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1317245	12279634	121572261	591	3695											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12279840	12279840	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tattggtggcctgtggtgctGgttcttcagtcggatctaca	5	15	13	8	1	3	0	1	0	2	0	4	1	3	1	1	5	2	2	1	5	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon20	c.C4097T	p.P1366L	GGTGCTGGTTCTT	.	64	23	95	0	.	.	A	12279840	G	A	12279840	3	1	24	1	0	0	0	0	1	0	0	0	9007	1348	47	3	760	3	LRP6	12	12279840	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	206	12279840	121572055	592	3696											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12291295	12291295	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagctcctttactgcatgaaTgtcactaagctgggcaattc	10	12	8	11	0	1	1	1	1	0	0	3	1	2	1	1	1	4	4	1	1	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon16	c.A3571G	p.I1191V	CATGAATGTCACT	.	34	18	60	0	.	.	C	12291295	T	C	12291295	3	2	24	1	0	0	0	0	1	0	0	0	9007	1464	51	4	1302	4	LRP6	12	12291295	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	11455	12291295	121560600	593	3697											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26816634	26816634	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgatttttccggtaaTcctgctgcgagtgtctcagg	6	14	11	10	2	1	2	1	2	1	0	4	3	3	2	3	2	2	2	3	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002223	exon15	c.A1697T	p.D566V	CGGTAATCCTGCT	.	46	20	100	0	.	.	A	26816634	T	A	26816634	3	1	24	1	0	0	0	0	1	0	0	0	7965	1435	50	5	6580	5	ITPR2	12	26816634	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	14525339	26816634	107035261	594	3698											
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	29639246	29639246	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttgttatataccttgAgcccacttttgagaggggtt	7	15	11	8	0	0	2	0	2	0	1	0	3	0	2	3	3	2	2	3	3	3	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183378	exon8	c.T928G	p.S310A	ACCTTGAGCCCAC	.	133	58	215	0	.	.	C	29639246	A	C	29639246	3	2	24	1	0	0	0	0	1	0	0	0	11370	304	11	4	2560	4	OVCH1	12	29639246	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2822612	29639246	104212649	595	3699											
DDX11	1663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	31256769	31256769	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggagaagtcggcctcttcctGatgggcaaccacaccactgc	9	7	11	14	1	1	2	0	1	1	1	3	3	2	2	4	3	2	1	4	3	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030653	exon27	c.G2720A	p.X907X	CTTCCTGATGGGC	.	48	25	65	0	.	.	A	31256769	G	A	31256769	2	1	24	1	0	0	0	0	0	0	0	1	4366	1285	45	3		3	DDX11	12	31256769	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1617523	31256769	102595126	596	3700											
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48131422	48131422	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	accttcagctgctggacataAgcccaggtgctggctggact	8	9	12	12	0	1	0	1	0	0	0	1	2	1	2	2	4	4	4	2	4	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098531	exon28	c.T2700A	p.A900A	GACATAAGCCCAG	.	43	16	50	0	.	.	T	48131422	A	T	48131422	2	4	24	1	0	0	0	0	0	0	0	1	13097	59	3	5		5	RAPGEF3	12	48131422	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	16874653	48131422	85720473	597	3701											
PFKM	5213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48501972	48501972	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggaagcatacctgttttcaAaactggtgaggcatgtgggt	10	11	14	6	0	1	1	1	1	0	0	1	2	1	2	1	4	3	3	1	4	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166686	exon3	c.A200C	p.K67T	TTTTCAAAACTGG	.	44	17	61	0	.	.	C	48501972	A	C	48501972	3	2	24	1	0	0	0	0	1	0	0	0	11813	14	1	4	206	4	PFKM	12	48501972	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	370550	48501972	85349923	598	3702											
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49483683	49483683	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taagcggtagaggagccgagAgtaccaatgcatgccagtcg	12	6	14	9	3	0	2	0	0	0	2	1	4	0	3	3	2	5	3	3	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021044	exon3	c.T1150C	p.S384P	GCCGAGAGTACCA	.	28	13	51	0	.	.	G	49483683	A	G	49483683	3	3	24	1	0	0	0	0	1	0	0	0	4511	304	11	4	44	4	DHH	12	49483683	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	981711	49483683	84368212	599	3703											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	50855117	50855117	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggtggaacagaatggggacTatggtaggggcaggtaagaa	14	6	18	3	0	0	2	0	0	0	2	0	4	0	4	0	8	1	3	0	8	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001170804	exon11	c.T1321C	p.Y441H	GGGGACTATGGTA	.	34	15	56	0	.	.	C	50855117	T	C	50855117	3	2	24	1	0	0	0	0	1	0	0	0	8669	1522	53	4	1363	4	LARP4	12	50855117	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1371434	50855117	82996778	600	3704											
ACVR1B	91	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52377793	52377793	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgcagataatggcacCtggacacagctgtggcttgt	8	12	11	10	0	1	1	0	0	1	1	2	2	1	2	1	3	2	4	1	3	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020328	exon6	c.C945A	p.T315T	TGGCACCTGGACA	.	42	22	53	0	.	.	A	52377793	C	A	52377793	2	1	24	1	0	0	0	0	0	0	0	1	220	668	24	3		3	ACVR1B	12	52377793	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1522676	52377793	81474102	601	3705											
KRT85	3891	bcgsc.ca	37	chr12	52757179	52757180	+	Missense_Mutation	DNP	GG	GG	TT																															ggtgtctgagatgtgggcttGgagaacgcggatctcctgtg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KRT85,NS,carcinoma,-2,1	KRT85	NM_002283	exon5	c.C801A	p.Q268K	GGCTTGGAGAACG	.	20	12	35	1	.	78	TT	52757180	GG	TT	52757179	3	4	24	1	0	0	0	0	1	0	0	0	8542	1357	47	3	741	3	KRT85	12	52757179	Missense_Mutation	DNP	GG	TCGA-W5-AA39-01A-11D-A417-09	379386	52757179	81094716	602	3706											
RARG	5916	broad.mit.edu	37	chr12	53607314	53607314	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagatggcgctgagcagcccTgtctcggtgtcatccatctc	6	10	11	14	2	3	2	1	1	2	1	6	2	4	2	2	2	2	2	2	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RARG	NM_000966	exon8	c.A984T	p.T328T	CAGCCCTGTCTCG	.	12	3	21	0	.	53	A	53607314	T	A	53607314	2	1	24	1	0	0	0	0	0	0	0	1	13106	1567	55	5		5	RARG	12	53607314	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	850135	53607314	80244581	603	3707											
ESPL1	9700	ucsc.edu	37	chr12	53677189	53677189	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctggtacaaaaatggCaggttctttcagaggtgctg	13	11	11	6	0	3	1	1	0	2	1	3	1	3	1	0	4	2	4	0	4	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ESPL1	NM_012291	exon16	c.C2944T	p.Q982X	AAATGGCAGGTTC	.	31	4	61	1	.	158	T	53677189	C	T	53677189	4	4	24	1	0	0	0	0	0	1	0	0	5281	711	25	3	3002	3	ESPL1	12	53677189	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	69875	53677189	80174706	604	3708											
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56215774	56215774	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	aggggcatcaacgttggaagGgcctcctcactttcttccgc	7	10	11	13	2	3	0	2	0	1	0	5	1	5	1	3	4	1	2	3	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032364	exon7	c.C2096T	p.P699L	TGGAAGGGCCTCC	.	38	18	47	0	.	.	A	56215774	G	A	56215774	3	1	24	1	0	0	0	0	1	0	0	0	4660	1232	43	3	16	3	DNAJC14	12	56215774	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2538585	56215774	77636121	605	3709											
CDK2	1017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56361718	56361718	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	taaccatcctaatattgtcaAgtaagtatgcgtctgagagg	13	12	9	7	1	2	1	1	1	1	1	3	2	3	1	2	1	2	2	2	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052827	exon2	c.A194G	p.K65R	TTGTCAAGTAAGT	.	52	22	52	0	.	.	G	56361718	A	G	56361718	3	3	24	1	0	0	0	0	1	0	0	0	3158	86	3	4	200	4	CDK2	12	56361718	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	145944	56361718	77490177	606	3710											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56578658	56578658	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ttgataatgtcctttaatttCcctagtagtttgggctcaat	9	18	7	7	0	1	1	1	1	0	0	3	1	3	1	2	1	0	3	2	1	5	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_139067	exon5	c.G462A	p.G154G	TAATTTCCCTAGT	.	63	22	92	0	.	.	T	56578658	C	T	56578658	2	4	24	1	0	0	0	0	0	0	0	1	14830	842	30	3		3	SMARCC2	12	56578658	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	216940	56578658	77273237	607	3711											
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56743381	56743381	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccagatctcaccttattgcTgccctttcctgaaccacctg	7	13	5	16	0	1	2	1	1	1	1	4	2	3	2	6	0	3	1	6	0	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005419	exon14	c.A1249T	p.S417C	TATTGCTGCCCTT	.	34	13	50	0	.	.	A	56743381	T	A	56743381	3	1	24	1	0	0	0	0	1	0	0	0	15321	1580	55	5	1350	5	STAT2	12	56743381	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	164723	56743381	77108514	608	3712											
TIMELESS	8914	broad.mit.edu	37	chr12	56822671	56822671	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaccatcccactcaccggcGtgcccaggaggcagcttcct	8	7	9	17	2	1	0	1	0	0	0	3	1	3	1	5	3	3	2	5	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TIMELESS	NM_003920	exon11	c.C1300T	p.R434C	ACCGGCGTGCCCA	.	15	4	17	0	.	107	A	56822671	G	A	56822671	3	1	24	1	0	0	0	0	1	0	0	0	15964	1145	40	1	2402	1	TIMELESS	12	56822671	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	79290	56822671	77029224	609	3713											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	57584755	57584755	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctctgacgccaccctggacaAgatcgagcggtgcgagtatg	9	7	13	12	4	1	2	0	1	1	1	2	5	1	3	2	2	2	1	2	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002332	exon43	c.A7199C	p.K2400T	TGGACAAGATCGA	.	14	7	16	0	.	.	C	57584755	A	C	57584755	3	2	24	1	0	0	0	0	1	0	0	0	8996	72	3	4	7369	4	LRP1	12	57584755	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	762084	57584755	76267140	610	3714											
NXPH4	11247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57619423	57619423	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cctggctctgtgccaagcccTtcaaagtcatctgtatcttc	7	13	7	14	0	5	0	2	0	3	0	6	0	5	0	3	1	2	2	3	1	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007224	exon2	c.T820G	p.F274V	AAGCCCTTCAAAG	.	12	7	27	0	.	.	G	57619423	T	G	57619423	3	3	24	1	0	0	0	0	1	0	0	0	10841	1609	56	4	826	4	NXPH4	12	57619423	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	34668	57619423	76232472	611	3715											
R3HDM2	22864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57682695	57682711	+	Splice_Site	DEL	TGTTGGTTAACATCAAA	TGTTGGTTAACATCAAA	-																															aaaggcttctttggagagtcTgttggttaacatcaaagaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TGTTGGTTAACATCAAA	TGTTGGTTAACATCAAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGAGTCTGTTGGT	.	44	6	90	0	.	.	-	57682711	TGTTGGTTAACATCAAA	-	57682695	8	5	24	1	0	1	0	1	0	0	1	0	12940	1594	55	0	2141	0	R3HDM2	12	57682695	Splice_Site	DEL	TGTTGGTTAACATCAAA	TCGA-W5-AA39-01A-11D-A417-09	63272	57682695	76169200	612	3716											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64505656	64505656	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagtgtcttgccaggcacaTgtgaatgaaattatcaaaac	15	10	8	8	0	2	2	1	2	1	0	2	2	2	2	1	1	2	1	1	1	6	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020762	exon17	c.T2034C	p.H678H	GGCACATGTGAAT	.	48	28	69	0	.	.	C	64505656	T	C	64505656	2	2	24	1	0	0	0	0	0	0	0	1	15201	1461	51	4		4	SRGAP1	12	64505656	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6822961	64505656	69346239	613	3717											
MSRB3	253827	bcgsc.ca	37	chr12	65672596	65672601	+	In_Frame_Del	DEL	CCTCTG	-	-																															cccctctcgctctgcctctcCctctgcctctgcctctgcct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCTCTG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MSRB3_ENST00000355192,rectum,carcinoma,+2,1	MSRB3	NM_198080	exon1	c.48_53del	p.16_18del	CCTCTCCCTCTGC	.	66	3	76	0	.	80	-	65672601	-	-	65672596	7	5	24	1	0	1	0	1	0	0	0	0	9937	610	22	0	50	0	MSRB3	12	65672596	In_Frame_Del	DEL	CCTCTG	TCGA-W5-AA39-01A-11D-A417-09	1166940	65672596	68179299	614	3718											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	72057114	72057114	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggtggccccgctcagAcgcgtgccgcgagcgtgaga	6	5	16	14	6	1	3	1	2	0	2	1	5	1	3	4	2	2	1	4	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144982	exon1	c.T277C	p.S93P	GCTCAGACGCGTG	.	49	19	95	0	.	.	G	72057114	A	G	72057114	3	3	24	1	0	0	0	0	1	0	0	0	17691	275	10	4	5832	4	ZFC3H1	12	72057114	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6384518	72057114	61794781	615	3719											
SYT1	6857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	79685872	79685872	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aagaggagaaactgggaaaaCttcagtattcactggattat	16	10	10	5	0	2	2	2	0	0	2	2	5	2	4	0	3	2	1	0	3	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135805	exon7	c.C436T	p.L146F	GGAAAACTTCAGT	.	59	20	84	0	.	.	T	79685872	C	T	79685872	3	4	24	1	0	0	0	0	1	0	0	0	15522	565	20	3	446	3	SYT1	12	79685872	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7628758	79685872	54166023	616	3720											
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	89916734	89916734	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gttccatcttctttaaaatgCcaaataatgtttgctggtac	11	16	6	8	0	2	0	0	0	2	0	3	0	3	0	2	1	3	4	2	1	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003774	exon1	c.G1593A	p.W531X	AAAATGCCAAATA	.	39	18	57	0	.	.	T	89916734	C	T	89916734	4	4	24	1	0	0	0	0	0	1	0	0	6255	740	26	3	147	3	GALNT4	12	89916734	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	10230862	89916734	43935161	617	3721											
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	89917207	89917207	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcagtattctgtaggaaatTggggcgagcatatggtgccc	10	10	14	7	1	1	0	0	0	1	0	1	2	1	1	1	4	3	4	1	4	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003774	exon1	c.A1120G	p.N374D	GGAAATTGGGGCG	.	49	14	78	0	.	.	C	89917207	T	C	89917207	3	2	24	1	0	0	0	0	1	0	0	0	6255	1812	63	4	620	4	GALNT4	12	89917207	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	473	89917207	43934688	618	3722											
APAF1	317	bcgsc.ca	37	chr12	99080607	99080607	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcactgcagattttcaccaGatgataagcttttggctagt	11	14	8	8	0	2	3	2	1	0	2	2	3	2	3	1	1	2	3	1	1	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	APAF1	NM_181868	exon16	c.G2260T	p.D754Y	TCACCAGATGATA	.	45	4	61	0	.	111	T	99080607	T	T	99080607	3	4	24	1	0	0	0	0	1	0	0	0	751	942	33	3	2318	3	APAF1	12	99080607	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	9163400	99080607	34771288	619	3723											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	101705835	101705835	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaactacagaatgataTgacagatgagaagtccgttg	16	8	12	5	1	0	5	0	3	0	3	1	8	1	6	1	1	2	1	1	1	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014503	exon21	c.T2333C	p.M778T	ATGATATGACAGA	.	37	22	54	0	.	.	C	101705835	T	C	101705835	3	2	24	1	0	0	0	0	1	0	0	0	17159	1464	51	4	2415	4	UTP20	12	101705835	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2625228	101705835	32146060	620	3724											
PRDM4	11108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	108145645	108145645	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acttctggagccatttgggaTttgggaatgctcgcctgcaa	8	12	12	9	1	1	0	0	0	1	0	2	3	1	3	2	3	3	2	2	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012406	exon5	c.A673G	p.I225V	TTGGGATTTGGGA	.	23	6	44	0	.	.	C	108145645	T	C	108145645	3	2	24	1	0	0	0	0	1	0	0	0	12511	1493	52	4	1764	4	PRDM4	12	108145645	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6439810	108145645	25706250	621	3725											
TPCN1	53373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113664590	113664590	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggcccagtggctttgaaaGggagctcaaaccagagacta	12	7	12	10	0	1	2	1	1	0	1	1	4	1	3	2	3	2	2	2	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001143819	exon3	c.G149A	p.R50K	TTGAAAGGGAGCT	.	33	11	29	0	.	.	A	113664590	G	A	113664590	3	1	24	1	0	0	0	0	1	0	0	0	16456	1000	35	3	155	3	TPCN1	12	113664590	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5518945	113664590	20187305	622	3726											
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	115114210	115114210	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcactggaggactcatcaGaggtcccattctcctttttg	7	14	9	11	0	4	1	3	0	1	1	6	3	5	3	2	3	0	1	2	3	0	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016569	exon6	c.C1007A	p.S336Y	TCATCAGAGGTCC	.	30	13	52	0	.	.	T	115114210	G	T	115114210	3	4	24	1	0	0	0	0	1	0	0	0	15719	942	33	3	1236	3	TBX3	12	115114210	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1449620	115114210	18737685	623	3727											
PXN	5829	hgsc.bcm.edu;ucsc.edu	37	chr12	120649932	120649932	+	RNA	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agggaggagggggcccagagGctctggcaggggtgaagaca	10	3	21	7	0	1	3	0	1	1	2	1	5	1	5	1	8	0	2	1	8	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCAGAGGCTCTGG	.	38	23	55	0	.	.	C	120649932	G	C	120649932	1	2	24	0	1	0	0	0	0	0	0	0	12904	1218	42	5		5	PXN	12	120649932	RNA	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5535722	120649932	13201963	624	3728											
PSMD9	5715	broad.mit.edu	37	chr12	122326825	122326825	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccggcgtcgtgactgtcagCgacgtccaggagctgatgcg	6	7	16	12	6	1	2	1	2	0	0	3	4	2	3	2	2	3	1	2	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSMD9	NM_001261400	exon1	c.C63T	p.S21S	TGTCAGCGACGTC	.	38	3	68	0	.	8	T	122326825	C	T	122326825	2	4	24	1	0	0	0	0	0	0	0	1	12754	767	27	1		1	PSMD9	12	122326825	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1676893	122326825	11525070	625	3729											
ZCCHC8	55596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122973962	122973962	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccttgttgtttttaatggCacaggactcttccactttgt	6	19	7	9	0	1	0	0	0	1	0	3	1	3	1	2	2	0	3	2	2	1	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017612	exon5	c.G472A	p.A158T	TAATGGCACAGGA	.	70	29	130	0	.	.	T	122973962	C	T	122973962	3	4	24	1	0	0	0	0	1	0	0	0	17652	710	25	3	1691	3	ZCCHC8	12	122973962	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	647137	122973962	10877933	626	3730											
DNAH10	642797	bcgsc.ca	37	chr12	124418997	124418997	+	Missense_Mutation	SNP	A	T	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgggctgctcctccacagAgggaaggtgggcaggacaga	9	6	16	10	0	1	2	0	0	1	2	3	4	3	4	2	5	1	3	2	5	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	DNAH10	.	.	.	.	CCACAGAGGGAAG	.	37	10	51	0	.	888	T	124418997	T	T	124418997	3	4	24	1	0	0	0	0	1	0	0	0	4626	319	11	5		5	DNAH10	12	124418997	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1445035	124418997	9432898	627	3731											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	129566387	129566387	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgggctcctccacctgcaTgaagtcatttatcagctccg	7	11	8	15	1	2	1	2	1	0	0	5	1	5	1	5	1	2	3	5	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133448	exon7	c.A1840T	p.M614L	CCTGCATGAAGTC	.	26	8	45	0	.	.	A	129566387	T	A	129566387	3	1	24	1	0	0	0	0	1	0	0	0	16107	1464	51	5	1471	5	TMEM132D	12	129566387	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5147390	129566387	4285508	628	3732											
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	133202837	133202837	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggagaactcgccgacatccaCcaggcgaagcaggtctcggt	10	5	13	13	4	1	1	0	0	1	1	4	4	2	1	3	4	2	1	3	4	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006231	exon46	c.G6397T	p.V2133L	CATCCACCAGGCG	.	10	4	20	0	.	.	A	133202837	C	A	133202837	3	1	24	1	0	0	0	0	1	0	0	0	12244	507	18	3	479	3	POLE	12	133202837	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3636450	133202837	649058	629	3733											
GOLGA3	2802	hgsc.bcm.edu	37	chr12	133351864	133351864	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatggacaggtcttcctGggccatctccaactcagact	8	10	10	13	0	4	1	2	0	2	1	6	2	5	2	3	4	1	0	3	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GOLGA3,NS,carcinoma,0,1	GOLGA3	NM_005895	exon22	c.C4006A	p.Q1336K	CTTCCTGGGCCAT	.	43	2	48	0	.	0	T	133351864	G	T	133351864	3	4	24	1	0	0	0	0	1	0	0	0	6596	1357	47	3	502	3	GOLGA3	12	133351864	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	149027	133351864	500031	630	3734											
USP12	219333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	27669906	27669906	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtaaaatatcagcaatTgtatttagtaggtaatttaa	15	17	6	3	0	2	0	1	0	1	0	2	0	2	0	0	1	1	5	0	1	9	11	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182488	exon4	c.A405C	p.T135T	AGCAATTGTATTT	.	123	47	250	0	.	.	G	27669906	T	G	27669906	2	3	24	1	0	0	0	0	0	0	0	1	17103	1799	63	4		4	USP12	13	27669906	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		27669906	87499972	631	3735											
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	31205128	31205128	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccaaaaagactagaaattatAttgctattgacggtggaaaa	18	10	8	5	1	0	3	0	1	0	2	0	4	0	4	1	2	1	1	1	2	9	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005800	exon4	c.A385G	p.I129V	AATTATATTGCTA	.	44	20	59	0	.	.	G	31205128	A	G	31205128	3	3	24	1	0	0	0	0	1	0	0	0	17152	449	16	4	395	4	USPL1	13	31205128	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3535222	31205128	83964750	632	3736											
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41636805	41636805	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	actactggaagtcacagccaAagaaattctgtgattactgc	14	10	8	9	0	2	2	1	1	1	1	2	3	2	3	1	1	4	0	1	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007187	exon2	c.A28C	p.K10Q	CAGCCAAAGAAAT	.	59	25	113	0	.	.	C	41636805	A	C	41636805	3	2	24	1	0	0	0	0	1	0	0	0	17321	15	1	4	34	4	WBP4	13	41636805	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	10431677	41636805	73533073	633	3737											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52539138	52539138	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagtttggactctatgttgTggacacaggacgcgcaggtc	8	11	14	8	2	1	1	0	1	1	0	2	4	1	4	0	4	0	3	0	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000053	exon5	c.A1739T	p.H580L	ATGTTGTGGACAC	.	75	26	103	0	.	.	A	52539138	T	A	52539138	3	1	24	1	0	0	0	0	1	0	0	0	1189	1696	59	5	2726	5	ATP7B	13	52539138	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	10902333	52539138	62630740	634	3738											
ALG11	440138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52598853	52598853	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gctaaattgctgaataagaaGatggttgagtcacctccttc	12	12	9	8	0	1	4	1	2	0	2	3	4	2	4	2	1	1	3	2	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004127	exon3	c.G987A	p.K329K	TAAGAAGATGGTT	.	38	17	60	0	.	.	A	52598853	G	A	52598853	2	1	24	1	0	0	0	0	0	0	0	1	510	933	33	3		3	ALG11	13	52598853	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	59715	52598853	62571025	635	3739											
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52603174	52603174	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gagttcagtgtcagttctgaAggatcaggagaaaagctggg	12	9	15	5	0	4	2	3	1	1	1	4	5	4	3	0	3	1	3	0	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021645	exon2	c.A234C	p.E78D	TTCTGAAGGATCA	.	60	27	87	0	.	.	C	52603174	A	C	52603174	3	2	24	1	0	0	0	0	1	0	0	0	17156	69	3	4	236	4	UTP14C	13	52603174	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4321	52603174	62566704	636	3740											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	77672823	77672823	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gctgggagagtctttggcttAggagatgacaaccgagaacc	11	8	14	8	1	1	4	0	1	1	3	1	7	1	4	2	3	2	2	2	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015057	exon56	c.T8466G	p.P2822P	TGGCTTAGGAGAT	.	26	12	43	0	.	.	C	77672823	A	C	77672823	2	2	24	1	0	0	0	0	0	0	0	1	10066	407	15	4		4	MYCBP2	13	77672823	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	25069649	77672823	37497055	637	3741											
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	101320946	101320946	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cttagcccagaatggaggaaGaacagaagatggaagaatgt	17	6	13	5	0	0	5	0	0	0	5	0	8	0	8	1	3	2	0	1	3	7	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TMTC4,NS,carcinoma,0,1	TMTC4	NM_032813	exon3	c.C106T	p.L36F	GAGGAAGAACAGA	.	47	19	89	0	.	0	A	101320946	G	A	101320946	3	1	24	1	0	0	0	0	1	0	0	0	16323	942	33	3	2244	3	TMTC4	13	101320946	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	23648123	101320946	13848932	638	3742											
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20216384	20216384	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ttgaggcctttctgcagcttCtctgtggataagatattctc	7	16	9	9	0	3	2	0	1	3	1	5	3	3	3	1	2	2	2	1	2	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172194	exon1	c.C798G	p.F266L	CAGCTTCTCTGTG	.	27	6	37	0	.	.	G	20216384	C	G	20216384	3	3	24	1	0	0	0	0	1	0	0	0	11129	912	32	5	800	5	OR4Q3	14	20216384	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09		20216384	87133156	639	3743											
OR4N2	390429	hgsc.bcm.edu;bcgsc.ca	37	chr14	20295956	20295956	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggagggattactccttgttGtgatggcctttgaccgctac	6	13	13	9	1	0	2	0	2	0	0	1	4	1	4	3	3	2	2	3	3	2	5	rs75595142	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004723	exon1	c.G349T	p.V117L	CTTGTTGTGATGG	.	126	29	175	0	.	.	T	20295956	G	T	20295956	3	4	24	1	0	0	0	0	1	0	0	0	11125	1377	48	3	351	3	OR4N2	14	20295956	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	79572	20295956	87053584	640	3744											
CHD8	57680	hgsc.bcm.edu	37	chr14	21896185	21896185	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtcctcatttaagactcGaggtatgttctgctcaccgc	7	13	8	13	3	3	1	2	0	1	1	6	2	4	1	2	1	1	3	2	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHD8,NS,carcinoma,0,1	CHD8	NM_001170629	exon3	c.C1444A	p.R482R	AGACTCGAGGTAT	.	29	2	33	0	.	0	T	21896185	G	T	21896185	2	4	24	1	0	0	0	0	0	0	0	1	3353	1066	37	2		2	CHD8	14	21896185	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1600229	21896185	85453355	641	3745											
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23416891	23416891	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcggattgagtcttcagcCggtgttcttgaagaagcctc	7	12	12	10	2	3	3	1	2	2	1	5	4	3	4	2	2	2	2	2	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166269	exon8	c.G758A	p.R253Q	TTCAGCCGGTGTT	.	59	31	79	0	.	.	T	23416891	C	T	23416891	3	4	24	1	0	0	0	0	1	0	0	0	7009	652	23	1	345	1	HAUS4	14	23416891	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1520706	23416891	83932649	642	3746											
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24532678	24532678	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cactcatggttacaaactaaGgcatcaaacacaagggaggc	16	6	9	10	0	2	0	2	0	0	0	2	1	2	1	0	4	3	2	0	4	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138360	exon31	c.G2915A	p.R972K	AACTAAGGCATCA	.	19	14	22	0	.	.	A	24532678	G	A	24532678	3	1	24	1	0	0	0	0	1	0	0	0	9017	1000	35	3	3037	3	LRRC16B	14	24532678	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1115787	24532678	82816862	643	3747											
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24777048	24777048	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtaagtcactggggttcagaGctgagaggtactccatggtg	9	10	15	7	0	2	2	2	1	0	2	3	3	3	2	1	4	2	4	1	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014430	exon3	c.C17A	p.A6D	TTCAGAGCTGAGA	.	35	10	54	0	.	.	T	24777048	G	T	24777048	3	4	24	1	0	0	0	0	1	0	0	0	3448	971	34	3	662	3	CIDEB	14	24777048	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	244370	24777048	82572492	644	3748											
SCFD1	23256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31097418	31097418	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaactttttattttcagtggCtttgaagcgtatgttgaatt	10	19	8	4	1	1	2	1	2	0	0	1	2	1	2	0	1	2	3	0	1	5	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016106	exon2	c.C65G	p.A22G	CAGTGGCTTTGAA	.	56	21	101	0	.	.	G	31097418	C	G	31097418	3	3	24	1	0	0	0	0	1	0	0	0	13942	797	28	5	71	5	SCFD1	14	31097418	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	6320370	31097418	76252122	645	3749											
SRP54	6729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35468824	35468824	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggaagcagatgttaatattAaactagtgaagcaactaaga	18	10	9	4	0	0	3	0	1	0	2	0	4	0	4	0	1	4	3	0	1	9	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003136	exon3	c.A139G	p.K47E	AATATTAAACTAG	.	37	20	57	0	.	.	G	35468824	A	G	35468824	3	3	24	1	0	0	0	0	1	0	0	0	15211	363	13	4	145	4	SRP54	14	35468824	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4371406	35468824	71880716	646	3750											
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45583442	45583442	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaaagaacaggattctttaaAaaggaaagcagaaaatgggt	20	7	11	3	0	1	2	0	0	1	2	1	5	1	4	0	3	2	1	0	3	8	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017922	exon12	c.A1814C	p.K605T	CTTTAAAAAGGAA	.	94	33	147	0	.	.	C	45583442	A	C	45583442	3	2	24	1	0	0	0	0	1	0	0	0	12621	14	1	4	1856	4	PRPF39	14	45583442	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	10114618	45583442	61766098	647	3751											
ATP5S	27109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	50789296	50789296	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccgagtggttgctgcgctgtGgggccatggtgcgctaccat	4	10	16	11	3	0	0	0	0	0	0	0	1	0	0	3	4	4	4	3	4	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015684	exon3	c.G220T	p.G74W	CGCTGTGGGGCCA	.	15	5	45	0	.	.	T	50789296	G	T	50789296	3	4	24	1	0	0	0	0	1	0	0	0	1161	1348	47	3	230	3	ATP5S	14	50789296	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5205854	50789296	56560244	648	3752											
PTGER2	5732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52781389	52781389	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggggtgctggggaacctcatAgcactggcgctgctggcgcg	5	7	18	11	3	1	0	1	0	0	0	1	1	1	1	1	6	4	4	1	6	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000956	exon1	c.A123G	p.I41M	CCTCATAGCACTG	.	41	21	73	0	.	.	G	52781389	A	G	52781389	3	3	24	1	0	0	0	0	1	0	0	0	12793	410	15	4	125	4	PTGER2	14	52781389	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1992093	52781389	54568151	649	3753											
BMP4	652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	54418732	54418732	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactcttgctaggctgcgggCggcggcgcagcccaaacatc	7	6	13	15	4	1	0	0	0	1	0	2	0	1	0	1	4	4	3	1	4	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BMP4,colon,carcinoma,0,2	BMP4	NM_130851	exon3	c.G209C	p.R70P	TGCGGGCGGCGGC	.	25	15	32	0	.	0	G	54418732	C	G	54418732	3	3	24	1	0	0	0	0	1	0	0	0	1461	768	27	5	1025	5	BMP4	14	54418732	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1637343	54418732	52930808	650	3754											
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55169112	55169112	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	attatggacagacacactacTatcaccaaagacagaactct	17	8	5	11	0	2	3	1	0	1	3	2	4	2	4	1	1	2	0	1	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015589	exon2	c.T529C	p.Y177H	CACTACTATCACC	.	31	16	30	0	.	.	C	55169112	T	C	55169112	3	2	24	1	0	0	0	0	1	0	0	0	13873	1522	53	4	532	4	SAMD4A	14	55169112	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	750380	55169112	52180428	651	3755											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64565493	64565493	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagaggctccatgtcttaccTggcagcagtcgaggaagagg	11	7	14	9	1	1	2	0	0	1	2	3	4	2	3	2	4	2	3	2	4	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182914	exon63	c.T12335A	p.L4112Q	CTTACCTGGCAGC	.	44	19	42	0	.	.	A	64565493	T	A	64565493	3	1	24	1	0	0	0	0	1	0	0	0	15503	1580	55	5	12581	5	SYNE2	14	64565493	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9396381	64565493	42784047	652	3756											
GPX2	2877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	65406264	65406264	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caatgttgatggttgggaagGtgcggctgtagcgtcggaag	8	10	18	5	3	0	1	0	1	0	0	1	3	0	3	0	5	2	4	0	5	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.T172S	.	.	GGGAAGGTGCGGC	.	31	15	42	0	.	.	C	65406264	G	C	65406264	3	2	24	1	0	0	0	0	1	0	0	0	6781	1261	44	5	61	5	GPX2	14	65406264	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	840771	65406264	41943276	653	3757											
KIAA0247	9766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70175521	70175521	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgccacctgctgaccccagaGtacagattgtgctgtcagaa	10	9	10	12	0	1	4	1	1	0	3	1	4	1	4	4	0	4	3	4	0	2	2	rs368679025		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014734	exon5	c.G586A	p.V196I	CCCAGAGTACAGA	.	16	6	30	0	.	.	A	70175521	G	A	70175521	3	1	24	1	0	0	0	0	1	0	0	0	8207	1029	36	3	600	3	KIAA0247	14	70175521	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	4769257	70175521	37174019	654	3758											
ADAM21	8747	broad.mit.edu;bcgsc.ca	37	chr14	70924269	70924269	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtcactcttctgctgctctGgcttggggtatttttgtcta	4	18	10	9	0	5	0	1	0	4	0	5	0	5	0	0	3	2	4	0	3	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADAM21	NM_003813	exon2	c.G53T	p.W18L	TGCTCTGGCTTGG	.	11	6	27	0	.	181	T	70924269	G	T	70924269	3	4	24	1	0	0	0	0	1	0	0	0	242	1357	47	3	55	3	ADAM21	14	70924269	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	748748	70924269	36425271	655	3759											
ZNF410	57862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	74387683	74387683	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	taacctggtccctgtttcagGagagaagcctcatcagtgcc	9	10	10	12	0	3	1	3	0	0	1	4	3	4	2	4	2	3	1	4	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242924	exon10	c.G1055A	p.G352E	TTTCAGGAGAGAA	.	26	7	49	0	.	.	A	74387683	G	A	74387683	3	1	24	1	0	0	0	0	1	0	0	0	17947	1188	41	3	1034	3	ZNF410	14	74387683	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3463414	74387683	32961857	656	3760											
PSMC1	5700	broad.mit.edu;bcgsc.ca	37	chr14	90736595	90736609	+	In_Frame_Del	DEL	CGCATCTTTCAGATT	CGCATCTTTCAGATT	-																															ctgatgaaaagacgaagaagCgcatctttcagattcacaca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSMC1	NM_002802	exon10	c.1087_1101del	p.363_367del	AAGAAGCGCATCT	.	28	6	68	0	.	27	-	90736609	CGCATCTTTCAGATT	-	90736595	7	5	24	1	0	1	0	1	0	0	0	0	12734	768	27	0	1125	0	PSMC1	14	90736595	In_Frame_Del	DEL	CGCATCTTTCAGATT	TCGA-W5-AA39-01A-11D-A417-09	16348912	90736595	16612945	657	3761											
ASB2	51676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94401066	94401066	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagcggcaaggtgtctaggAgttttatacggtatttccca	9	12	13	7	2	1	0	0	0	1	0	2	2	2	2	1	5	2	3	1	5	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ASB2	NM_001202429	exon10	c.T1844C	p.L615P	TCTAGGAGTTTTA	.	58	25	81	2	.	71	G	94401066	A	G	94401066	3	3	24	1	0	0	0	0	1	0	0	0	1022	304	11	4	67	4	ASB2	14	94401066	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3664471	94401066	12948474	658	3762											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95569702	95569703	+	Missense_Mutation	DNP	GA	GA	AT																															cctttttgcttctcatatatGaaaggcggccctcatgcgca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030621	exon22	c.T4030A	p.S1344I	TATATGAAAGGCG	.	27	13	35	0	.	.	AT	95569703	GA	AT	95569702	3	1	24	1	0	0	0	0	1	0	0	0	4549	1294	45	3	1765	3	DICER1	14	95569702	Missense_Mutation	DNP	GA	TCGA-W5-AA39-01A-11D-A417-09	1168636	95569702	11779838	659	3763											
ZNF839	55778	bcgsc.ca	37	chr14	102800980	102800980	+	Translation_Start_Site	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatgagtttcttctgatGaaggtgagtactcttagtgt	8	17	12	4	0	3	4	0	4	3	0	3	4	3	4	0	1	1	3	0	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZNF839	NM_018335	exon4	c.G1506T	p.M502I	TCTGATGAAGGTG	.	56	4	80	0	.	41	T	102800980	T	T	102800980	1	4	24	1	0	0	0	0	0	0	0	0	18235	1290	45	3		3	ZNF839	14	102800980	Translation_Start_Site	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	7231278	102800980	4548560	660	3764											
RCOR1	23186	hgsc.bcm.edu	37	chr14	103173699	103173699	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtaggctcttgggatGctcttctggcataaacataa	9	16	9	7	0	3	0	0	0	3	0	3	1	3	1	0	3	2	4	0	3	4	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015156	exon5	c.G510A	p.M170I	TGGGATGCTCTTC	.	45	3	69	0	.	.	A	103173699	G	A	103173699	3	1	24	1	0	0	0	0	1	0	0	0	13234	1319	46	3	519	3	RCOR1	14	103173699	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	372719	103173699	4175841	661	3765											
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	103410551	103410551	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattgaactttctgtggaatGgcttcgttctctggatctca	7	16	9	9	1	3	1	1	1	3	0	6	3	3	3	0	3	1	2	0	3	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006035	exon30	c.C4085T	p.P1362L	TGGAATGGCTTCG	.	19	6	29	0	.	.	A	103410551	G	A	103410551	3	1	24	1	0	0	0	0	1	0	0	0	3095	1348	47	3	1082	3	CDC42BPB	14	103410551	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	236852	103410551	3938989	662	3766											
AHNAK2	113146	broad.mit.edu	37	chr14	105414880	105414880	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtcggccagggacatgTccccctccagccgcgcacca	6	6	10	19	3	0	0	0	0	0	0	3	1	2	1	7	2	1	1	7	2	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	AHNAK2	NM_138420	exon7	c.A6908G	p.D2303G	GACATGTCCCCCT	.	74	3	131	0	.	719	C	105414880	T	C	105414880	3	2	24	1	0	0	0	0	1	0	0	0	412	1667	58	4	10483	4	AHNAK2	14	105414880	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2004329	105414880	1934660	663	3767											
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	23931983	23931983	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgtagctgccgatgaCatctttcaccatgtctggaa	8	14	8	11	1	4	1	1	1	3	0	4	3	4	2	2	1	2	2	2	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002487	exon1	c.G382A	p.V128I	CGATGACATCTTT	.	26	13	39	0	.	.	T	23931983	C	T	23931983	3	4	24	1	0	0	0	0	1	0	0	0	10294	478	17	3	587	3	NDN	15	23931983	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09		23931983	78599409	664	3768											
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33256352	33256352	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ataagtctctgacagaggttTtttcttctgttgagttgtgt	7	19	10	5	0	3	3	0	2	3	1	4	3	3	3	0	1	0	3	0	1	1	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001103184	exon5	c.A2425C	p.K809Q	GAGGTTTTTTCTT	.	68	28	105	0	.	.	G	33256352	T	G	33256352	3	3	24	1	0	0	0	0	1	0	0	0	5982	1850	64	4	1217	4	FMN1	15	33256352	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	9324369	33256352	69275040	665	3769											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35274078	35274078	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	attatgagtctgttcatgtcTttttaagtgagctgactgtc	8	18	9	6	0	3	3	1	3	2	0	4	3	3	3	0	0	1	2	0	0	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014106	exon3	c.A1558C	p.R520R	CATGTCTTTTTAA	.	41	16	72	0	.	.	G	35274078	T	G	35274078	2	3	24	1	0	0	0	0	0	0	0	1	18193	1617	56	4		4	ZNF770	15	35274078	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2017726	35274078	67257314	666	3770											
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	37329152	37329152	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgaagctacactgttgtctaAaccatcccctagtagaaaga	14	10	7	10	0	1	3	0	1	1	2	2	3	2	3	3	0	3	3	3	0	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170676	exon8	c.T763G	p.L255V	TGTCTAAACCATC	.	45	16	80	0	.	.	C	37329152	A	C	37329152	3	2	24	1	0	0	0	0	1	0	0	0	9518	11	1	4	753	4	MEIS2	15	37329152	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2055074	37329152	65202240	667	3771											
C15orf52	388115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40628778	40628778	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cccctgccacctgttaccttCgggccctgccagtcagcctc	4	9	8	20	1	1	0	1	0	0	0	3	0	1	0	8	1	4	1	8	1	1	2	rs370895955		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	C15orf52,right_lower_lobe,carcinoma,0,1	C15orf52	NM_207380	exon9	c.G1016A	p.R339Q	TACCTTCGGGCCC	.	42	18	56	0	.	0	T	40628778	C	T	40628778	3	4	24	1	0	0	0	0	1	0	0	0	1806	884	31	1	600	1	C15orf52	15	40628778	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3299626	40628778	61902614	668	3772											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu	37	chr15	42168834	42168834	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctggatactctgcagcTgctctctgaccctggagggc	5	10	13	13	0	2	1	0	1	2	0	3	3	2	3	2	3	5	3	2	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016642	exon20	c.A3758G	p.Q1253R	TGCAGCTGCTCTC	.	19	11	14	0	.	.	C	42168834	T	C	42168834	3	2	24	1	0	0	0	0	1	0	0	0	15178	1580	55	4	7357	4	SPTBN5	15	42168834	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1540056	42168834	60362558	669	3773											
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42363325	42363325	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tggccacggccctgacctgcCcaggtggagaagtctttgtg	6	9	14	12	1	1	2	0	1	1	1	1	3	1	2	4	4	1	0	4	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178034	exon17	c.G1872T	p.W624C	ACCTGCCCAGGTG	.	39	19	56	0	.	.	A	42363325	C	A	42363325	3	1	24	1	0	0	0	0	1	0	0	0	12052	624	22	3	600	3	PLA2G4D	15	42363325	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	194491	42363325	60168067	670	3774											
B2M	567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45007705	45007705	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgctatgtgtctgggtttcAtccatccgacattgaagttg	7	16	10	8	1	2	1	1	1	1	0	4	2	4	1	2	1	1	3	2	1	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004048	exon2	c.A152C	p.H51P	GGTTTCATCCATC	.	55	18	109	0	.	.	C	45007705	A	C	45007705	3	2	24	1	0	0	0	0	1	0	0	0	1242	217	8	4	158	4	B2M	15	45007705	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2644380	45007705	57523687	671	3775											
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	48580290	48580290	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtgggagagttcaaccagAaactggtggaagccagcact	13	7	13	8	0	1	2	1	0	0	2	1	4	1	3	2	3	4	2	2	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184832	exon22	c.A2680T	p.K894X	AACCAGAAACTGG	.	56	24	78	0	.	.	T	48580290	A	T	48580290	4	4	24	1	0	0	0	0	0	1	0	0	14437	247	9	5	2862	5	SLC12A1	15	48580290	Nonsense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3572585	48580290	53951102	672	3776											
DMXL2	23312	hgsc.bcm.edu	37	chr15	51741202	51741202	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tatagaatgtcaagaattctGttagggatgttaaaagcatt	15	14	9	3	0	2	2	1	0	1	2	2	3	2	3	0	1	1	3	0	1	8	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	DMXL2,bladder,carcinoma,0,1	DMXL2	NM_001174116	exon43	c.C9093A	p.N3031K	AATTCTGTTAGGG	.	32	2	63	0	.	0	T	51741202	G	T	51741202	3	4	24	1	0	0	0	0	1	0	0	0	4623	1368	48	3	24	3	DMXL2	15	51741202	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3160912	51741202	50790190	673	3777											
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52242142	52242142	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgtttctctctcattcggCgctgctgagattccctacgt	4	15	9	13	3	2	1	1	1	2	1	6	2	3	1	1	1	2	4	1	1	1	4	rs367614131		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138792	exon10	c.G1661A	p.R554H	ATTCGGCGCTGCT	.	34	18	47	0	.	.	T	52242142	C	T	52242142	3	4	24	1	0	0	0	0	1	0	0	0	8765	768	27	1	351	1	LEO1	15	52242142	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	500940	52242142	50289250	674	3778											
CLPX	10845	bcgsc.ca	37	chr15	65447200	65447212	+	Frame_Shift_Del	DEL	CATCTAGGCTATG	-	-																															tatttgtacaagtgttttctCatctaggctatgcaatggaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CATCTAGGCTATG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CLPX	NM_006660	exon11	c.1519_1531del	p.507_511del	TTTTCTCATCTAG	.	30	3	61	0	.	49	-	65447212	-	-	65447200	7	5	24	1	0	1	0	1	0	0	0	0	3579	835	29	0	386	0	CLPX	15	65447200	Frame_Shift_Del	DEL	CATCTAGGCTATG	TCGA-W5-AA39-01A-11D-A417-09	13205058	65447200	37084192	675	3779											
IMP3	55272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75932170	75932170	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catgcgcagcttgaggagcaCggtggggaggcggcggcggc	6	4	21	10	5	0	1	0	1	0	0	0	3	0	3	0	8	3	3	0	8	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018285	exon1	c.G340A	p.V114M	GGAGCACGGTGGG	.	23	10	37	0	.	.	T	75932170	C	T	75932170	3	4	24	1	0	0	0	0	1	0	0	0	7763	536	19	1	218	1	IMP3	15	75932170	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	10484970	75932170	26599222	676	3780											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75968341	75968341	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcggggacactgagcagggcCacgctgtagggccgggcagc	7	4	18	12	3	0	1	0	1	0	0	1	2	0	2	2	5	2	4	2	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001897	exon10	c.G6519A	p.V2173V	CAGGGCCACGCTG	.	36	18	50	0	.	.	T	75968341	C	T	75968341	2	4	24	1	0	0	0	0	0	0	0	1	3985	581	21	3		3	CSPG4	15	75968341	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	36171	75968341	26563051	677	3781											
ISL2	64843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	76632810	76632810	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggcctgagcccgcgggtcatCcgcgtctggttccagaacaa	7	7	13	14	4	2	2	1	1	1	1	4	2	4	2	4	3	2	1	4	3	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145805	exon4	c.C705A	p.I235I	GGTCATCCGCGTC	.	63	21	71	0	.	.	A	76632810	C	A	76632810	2	1	24	1	0	0	0	0	0	0	0	1	7901	845	30	3		3	ISL2	15	76632810	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	664469	76632810	25898582	678	3782											
WDR61	80349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78582401	78582401	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatgagttcctgtggccagAtactgggaatcaggagaaaa	14	8	12	7	0	1	3	1	1	0	2	2	5	2	4	2	3	1	1	2	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025234	exon6	c.T360C	p.Y120Y	GGCCAGATACTGG	.	49	25	76	0	.	.	G	78582401	A	G	78582401	2	3	24	1	0	0	0	0	0	0	0	1	17372	340	12	4		4	WDR61	15	78582401	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1949591	78582401	23948991	679	3783											
IREB2	3658	hgsc.bcm.edu	37	chr15	78770699	78770699	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaagctgtgaaattgtttcGaaatgaccagaattcttcag	14	13	8	6	1	2	3	1	2	1	1	3	4	2	3	1	0	1	2	1	0	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	IREB2,rectum,carcinoma,0,3	IREB2	NM_004136	exon10	c.G1256T	p.R419L	TGTTTCGAAATGA	.	38	2	61	0	.	0	T	78770699	G	T	78770699	3	4	24	1	0	0	0	0	1	0	0	0	7870	1058	37	2	1294	2	IREB2	15	78770699	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	188298	78770699	23760693	680	3784											
ZFAND6	54469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	80429825	80429825	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tattactccatttccagggtTtgaatgccggtgtggaaatg	9	14	11	7	1	0	1	0	1	0	0	2	2	2	2	3	3	2	1	3	3	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242913	exon8	c.T482G	p.F161C	CAGGGTTTGAATG	.	43	18	57	0	.	.	G	80429825	T	G	80429825	3	3	24	1	0	0	0	0	1	0	0	0	17689	1841	64	4	500	4	ZFAND6	15	80429825	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1659126	80429825	22101567	681	3785											
FAH	2184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	80464579	80464579	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttttggaatggtccttatgaAcgactggagtggtaattact	10	15	11	5	1	0	1	0	1	0	0	1	4	1	3	1	4	2	1	1	4	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000137	exon8	c.A695G	p.N232S	TTATGAACGACTG	.	24	11	43	0	.	.	G	80464579	A	G	80464579	3	3	24	1	0	0	0	0	1	0	0	0	5402	43	2	4	725	4	FAH	15	80464579	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	34754	80464579	22066813	682	3786											
STARD5	80765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	81614763	81614763	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acttacgtcagtgatgctttGgataatttcaaaaccggtca	12	13	8	8	2	3	1	3	1	0	0	3	2	3	2	1	2	3	1	1	2	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181900	exon3	c.C268G	p.Q90E	TGCTTTGGATAAT	.	29	17	63	0	.	.	C	81614763	G	C	81614763	3	2	24	1	0	0	0	0	1	0	0	0	15316	1357	47	5	389	5	STARD5	15	81614763	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1150184	81614763	20916629	683	3787											
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	334725	334725	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggcccagtgccatgcggcTggaggacgaggcggccgccc	5	3	19	14	4	0	0	0	0	0	0	0	3	0	2	4	7	2	1	4	7	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006849	exon3	c.T473C	p.L158P	TGCGGCTGGAGGA	.	19	5	22	0	.	.	C	334725	T	C	334725	3	2	24	1	0	0	0	0	1	0	0	0	11715	1580	55	4	483	4	PDIA2	16	334725	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		334725	90020028	684	3788											
BAIAP3	8938	hgsc.bcm.edu	37	chr16	1393405	1393430	+	Frame_Shift_Del	DEL	TCAGCAGCCGCCACCATCAAACCTGC	TCAGCAGCCGCCACCATCAAACCTGC	-																															gccccacaggcactggcaggTcagcagccgccaccatcaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TCAGCAGCCGCCACCATCAAACCTGC	TCAGCAGCCGCCACCATCAAACCTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003933	exon15	c.1381_1406del	p.461_469del	GGCAGGTCAGCAG	.	50	0	95	0	.	.	-	1393430	TCAGCAGCCGCCACCATCAAACCTGC	-	1393405	7	5	24	1	0	1	0	1	0	0	0	0	1302	1667	58	0	1440	0	BAIAP3	16	1393405	Frame_Shift_Del	DEL	TCAGCAGCCGCCACCATCAAACCTGC	TCGA-W5-AA39-01A-11D-A417-09	1058680	1393405	88961348	685	3789	35	2									
BAIAP3	8938	bcgsc.ca	37	chr16	1393409	1393430	+	Frame_Shift_Del	DEL	CAGCCGCCACCATCAAACCTGC	-	-																															cacaggcactggcaggtcagCagccgccaccatcaaacctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAGCCGCCACCATCAAACCTGC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BAIAP3	NM_003933	exon15	c.1386_1407del	p.462_469del	GGTCAGCAGCCGC	.	26	3	67	0	.	88	-	1393430	-	-	1393409	7	5	24	1	0	1	0	1	0	0	0	0	1302	709	25	0	1444	0	BAIAP3	16	1393409	Frame_Shift_Del	DEL	CAGCCGCCACCATCAAACCTGC	TCGA-W5-AA39-01A-11D-A417-09	4	1393409	88961344	686	3790	35	2									
CRAMP1L	0	bcgsc.ca	37	chr16	1675956	1675956	+	Splice_Site	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttctggaacagatcactgtaCggtgctttctctccaaggag	9	12	10	10	1	3	1	1	0	2	1	5	3	4	3	1	3	3	2	1	3	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CRAMP1L	.	.	.	.	ACTGTACGGTGCT	.	18	3	20	0	.	60	T	1675956	T	T	1675956	5	4	24	1	0	0	0	0	0	0	1	0	3869	551	19	1		1	CRAMP1L	16	1675956	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	282547	1675956	88678797	687	3791											
NDUFB10	4716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2011155	2011155	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgtggctttgtctttgcagaAtttatagagcggcagcacgc	8	13	12	8	2	1	2	0	0	1	2	1	2	1	2	0	2	3	4	0	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004548	exon2	c.A132C	p.E44D	TGCAGAATTTATA	.	60	20	69	0	.	.	C	2011155	A	C	2011155	3	2	24	1	0	0	0	0	1	0	0	0	10326	115	4	4	138	4	NDUFB10	16	2011155	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	335199	2011155	88343598	688	3792											
NOXO1	124056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2030477	2030477	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgccagcagcctccgagaatAggtttccaacagctgcaggc	10	6	11	14	2	0	1	0	0	0	1	2	2	2	1	4	2	5	4	4	2	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172168	exon4	c.T307C	p.Y103H	GAGAATAGGTTTC	.	25	16	54	0	.	.	G	2030477	A	G	2030477	3	3	24	1	0	0	0	0	1	0	0	0	10608	420	15	4	843	4	NOXO1	16	2030477	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	19322	2030477	88324276	689	3793											
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	2052709	2052709	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggccaggtccttgcgcgagtAccacttgcgctcatatgtga	7	10	12	12	3	1	1	1	1	0	0	2	2	2	1	3	2	3	2	3	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178167	exon6	c.T490C	p.Y164H	GCGAGTACCACTT	.	18	12	10	0	.	.	G	2052709	A	G	2052709	3	3	24	1	0	0	0	0	1	0	0	0	18085	391	14	4	2260	4	ZNF598	16	2052709	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	22232	2052709	88302044	690	3794											
CASKIN1	57524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2233907	2233907	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggggcgtagagctgcagctgGaacgcggtgagccactggct	7	6	18	10	3	0	2	0	1	0	1	0	3	0	3	1	5	5	5	1	5	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020764	exon15	c.C1452A	p.F484L	CAGCTGGAACGCG	.	51	21	78	0	.	.	T	2233907	G	T	2233907	3	4	24	1	0	0	0	0	1	0	0	0	2684	1165	41	3	2867	3	CASKIN1	16	2233907	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	181198	2233907	88120846	691	3795											
RNPS1	10921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	2314620	2314620	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgactcctagcaagctctTctttttcactcctgataaat	9	17	4	11	0	3	2	1	2	2	0	5	2	5	2	2	0	2	2	2	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006711	exon2	c.A25G	p.K9E	AGCTCTTCTTTTT	.	26	16	18	0	.	.	C	2314620	T	C	2314620	3	2	24	1	0	0	0	0	1	0	0	0	13563	1792	62	4	920	4	RNPS1	16	2314620	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	80713	2314620	88040133	692	3796											
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	4815793	4815793	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcagggcctcccggggccCagccacctcctggtagcaga	6	5	13	17	1	1	1	1	0	0	1	3	1	3	1	6	4	2	3	6	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021646	exon2	c.G187C	p.G63R	GGGGCCCAGCCAC	.	22	9	48	0	.	.	G	4815793	C	G	4815793	3	3	24	1	0	0	0	0	1	0	0	0	18005	594	21	5	1275	5	ZNF500	16	4815793	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2501173	4815793	85538960	693	3797											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4920542	4920542	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgtctgaaggagcctctccAgaagctcaaggaagccattg	11	7	11	12	1	3	2	1	1	2	1	4	4	3	4	4	2	3	1	4	2	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001079514	exon10	c.A1337G	p.Q446R	CTCTCCAGAAGCT	.	12	5	26	0	.	.	G	4920542	A	G	4920542	3	3	24	1	0	0	0	0	1	0	0	0	16953	188	7	4	1371	4	UBN1	16	4920542	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	104749	4920542	85434211	694	3798											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	9857878	9857878	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgttggaaagcccctcttCattatgcaaggggttccggt	7	13	12	9	1	2	0	1	0	1	0	3	1	3	1	3	4	2	4	3	4	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GRIN2A,NS,carcinoma,0,2	GRIN2A	NM_000833	exon14	c.G3523T	p.E1175X	CCTCTTCATTATG	.	41	16	55	0	.	0	A	9857878	C	A	9857878	4	1	24	1	0	0	0	0	0	1	0	0	6820	835	29	3	875	3	GRIN2A	16	9857878	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4937336	9857878	80496875	695	3799											
SNX29	92017	hgsc.bcm.edu;ucsc.edu	37	chr16	12220546	12220546	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ggaaggatgagctggaggagGagaacaggtaccgtgatttt	12	8	17	4	1	0	3	0	2	0	1	0	8	0	7	1	6	3	2	1	6	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032167	exon12	c.G1459T	p.E487X	GAGGAGGAGAACA	.	31	4	59	0	.	.	T	12220546	G	T	12220546	4	4	24	1	0	0	0	0	0	1	0	0	14952	1175	41	3	318	3	SNX29	16	12220546	Nonsense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2362668	12220546	78134207	696	3800											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18865012	18865012	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aagtagaaagacctgtgaagTtctgttggtgctgagctctg	10	12	13	6	0	2	4	0	2	2	2	2	4	2	4	1	1	2	5	1	1	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015092	exon31	c.A4661C	p.N1554T	GTGAAGTTCTGTT	.	52	15	94	0	.	.	G	18865012	T	G	18865012	3	3	24	1	0	0	0	0	1	0	0	0	14849	1725	60	4	6456	4	SMG1	16	18865012	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6644466	18865012	71489741	697	3801											
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	20451133	20451133	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgcaggtggtaaaggcAtttatagtccttactccagc	9	13	9	10	0	0	0	0	0	0	0	3	0	3	0	3	3	3	3	3	3	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ACSM5,NS,carcinoma,0,1	ACSM5	NM_017888	exon13	c.A1548C	p.A516A	AAAGGCATTTATA	.	72	22	98	0	.	0	C	20451133	A	C	20451133	2	2	24	1	0	0	0	0	0	0	0	1	187	204	8	4		4	ACSM5	16	20451133	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1586121	20451133	69903620	698	3802											
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20554487	20554487	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	taatgatatcatctgcccgtCccataaactggaaataccca	14	10	5	12	1	2	1	1	1	1	0	3	2	3	2	3	1	3	0	3	1	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182617	exon12	c.G1379A	p.G460E	GCCCGTCCCATAA	.	164	52	195	0	.	.	T	20554487	C	T	20554487	3	4	24	1	0	0	0	0	1	0	0	0	184	855	30	3	370	3	ACSM2B	16	20554487	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	103354	20554487	69800266	699	3803											
DCUN1D3	123879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	20871607	20871607	+	Frame_Shift_Del	DEL	T	T	-																															aatttatcctcttgtttggcTtctgttaagaggctagggaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173475	exon3	c.517delG	p.A173fs	TTTGGCTTCTGTT	.	38	21	57	0	.	.	-	20871607	T	-	20871607	7	5	24	1	0	1	0	1	0	0	0	0	4338	1606	56	0	402	0	DCUN1D3	16	20871607	Frame_Shift_Del	DEL	T	TCGA-W5-AA39-01A-11D-A417-09	317120	20871607	69483146	700	3804											
UBFD1	56061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23578342	23578342	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttgcccatgggctccataaaAaatgtggtcagtgaacctat	12	11	9	9	0	1	1	1	1	0	0	2	1	2	1	3	2	2	1	3	2	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019116	exon6	c.A771C	p.K257N	CATAAAAAATGTG	.	47	16	56	0	.	.	C	23578342	A	C	23578342	3	2	24	1	0	0	0	0	1	0	0	0	16945	11	1	4	793	4	UBFD1	16	23578342	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2706735	23578342	66776411	701	3805											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24826538	24826538	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gactttatgaacagcagtacTtcaccagccagtcctccagg	11	9	8	13	0	1	1	1	1	0	0	3	2	3	1	4	1	4	2	4	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014494	exon19	c.T4743G	p.T1581T	CAGTACTTCACCA	.	39	31	65	0	.	.	G	24826538	T	G	24826538	2	3	24	1	0	0	0	0	0	0	0	1	16400	1596	56	4		4	TNRC6A	16	24826538	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1248196	24826538	65528215	702	3806											
GTF3C1	2975	hgsc.bcm.edu	37	chr16	27549552	27549552	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctccccttgccacctggacCggcctagccgttccaggatg	5	8	11	17	2	0	0	0	0	0	0	2	2	2	2	8	3	2	2	8	3	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GTF3C1,right_upper_lobe,carcinoma,+1,1	GTF3C1	NM_001520	exon3	c.G557A	p.R186Q	CTGGACCGGCCTA	.	42	2	63	0	.	+1	T	27549552	C	T	27549552	3	4	24	1	0	0	0	0	1	0	0	0	6913	652	23	1	5912	1	GTF3C1	16	27549552	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2723014	27549552	62805201	703	3807											
QPRT	23475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	29706151	29706151	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	ctggcagggcagcctttcttCgatgccatatttacccaact	8	12	8	13	1	1	0	0	0	1	0	2	1	1	0	3	2	4	2	3	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014298	exon2	c.C180G	p.F60L	TTTCTTCGATGCC	.	30	13	51	0	.	.	G	29706151	C	G	29706151	3	3	24	1	0	0	0	0	1	0	0	0	12928	883	31	5	186	5	QPRT	16	29706151	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2156599	29706151	60648602	704	3808											
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	29874145	29874145	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagcactcaccgatgaggtTgggcacgaacaggaagatat	13	6	13	9	2	1	2	1	1	0	1	1	5	1	3	1	3	2	4	1	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006319	exon1	c.A34G	p.N12D	TGAGGTTGGGCAC	.	23	11	43	0	.	.	C	29874145	T	C	29874145	3	2	24	1	0	0	0	0	1	0	0	0	3145	1812	63	4	631	4	CDIPT	16	29874145	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	167994	29874145	60480608	705	3809											
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu	37	chr16	30369466	30369486	+	In_Frame_Del	DEL	CCGCTCCTTCTCCTGTTTCTG	CCGCTCCTTCTCCTGTTTCTG	-																															tgcttctgccgctccttctcCcgctccttctcctgtttctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCGCTCCTTCTCCTGTTTCTG	CCGCTCCTTCTCCTGTTTCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015527	exon9	c.2207_2227del	p.736_743del	CTTCTCCCGCTCC	.	58	2	77	0	.	.	-	30369486	CCGCTCCTTCTCCTGTTTCTG	-	30369466	7	5	24	1	0	1	0	1	0	0	0	0	15656	610	22	0	204	0	TBC1D10B	16	30369466	In_Frame_Del	DEL	CCGCTCCTTCTCCTGTTTCTG	TCGA-W5-AA39-01A-11D-A417-09	495321	30369466	59985287	706	3810											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30734428	30734428	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	agctgtgttgaatccacgccCcacgttaacccctggccggc	7	8	10	16	3	0	1	0	1	0	0	1	1	1	1	6	2	2	3	6	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006662	exon24	c.C4037T	p.P1346L	CACGCCCCACGTT	.	46	22	78	0	.	.	T	30734428	C	T	30734428	3	4	24	1	0	0	0	0	1	0	0	0	15191	623	22	3	4123	3	SRCAP	16	30734428	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	364962	30734428	59620325	707	3811											
C16orf93	90835	ucsc.edu	37	chr16	30770351	30770351	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acttggctctggctctggtgGggccactgtctctagttcct	3	14	12	12	0	3	0	0	0	3	0	5	0	4	0	2	5	0	3	2	5	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C16orf93	NM_001014979	exon8	c.C799A	p.P267T	CTGGTGGGGCCAC	.	33	4	35	0	.	33	T	30770351	G	T	30770351	3	4	24	1	0	0	0	0	1	0	0	0	1853	1232	43	3	204	3	C16orf93	16	30770351	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	35923	30770351	59584402	708	3812											
FUS	2521	bcgsc.ca	37	chr16	31195693	31195698	+	In_Frame_Del	DEL	GGTGGA	-	-																															agtacaacagcagcagtggtGgtggaggtggaggtggaggt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGTGGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FUS	NM_004960	exon5	c.499_504del	p.167_168del	AGTGGTGGTGGAG	.	23	7	43	0	.	52	-	31195698	-	-	31195693	7	5	24	1	0	1	0	1	0	0	0	0	6135	1348	47	0	517	0	FUS	16	31195693	In_Frame_Del	DEL	GGTGGA	TCGA-W5-AA39-01A-11D-A417-09	425342	31195693	59159060	709	3813											
FUS	2521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31201095	31201095	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgacccaccttcagctaaagCagctattgactggtttgatg	10	12	9	10	0	1	3	1	3	0	0	1	3	1	3	2	1	3	4	2	1	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004960	exon10	c.C1046G	p.A349G	CTAAAGCAGCTAT	.	39	17	62	0	.	.	G	31201095	C	G	31201095	3	3	24	1	0	0	0	0	1	0	0	0	6135	710	25	5	1084	5	FUS	16	31201095	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	5402	31201095	59153658	710	3814											
PAPD5	64282	bcgsc.ca	37	chr16	50248133	50248133	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttctttttctgtttcaggTccagatatttggaagtttta	8	20	7	6	0	3	1	1	0	2	1	4	2	4	2	1	2	0	2	1	2	3	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PAPD5	NM_001040284	exon4	c.T719A	p.V240D	TTCAGGTCCAGAT	.	55	4	60	0	.	57	A	50248133	A	A	50248133	3	1	24	1	0	0	0	0	1	0	0	0	11472	1681	58	5	733	5	PAPD5	16	50248133	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	19047038	50248133	40106620	711	3815											
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	50733483	50733483	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcagggtccctggaaggctTcgagagtgtcctggactggc	6	9	15	11	1	1	1	1	0	0	1	4	4	3	3	2	5	0	1	2	5	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022162	exon2	c.T158G	p.F53C	AAGGCTTCGAGAG	.	63	28	131	0	.	.	G	50733483	T	G	50733483	3	3	24	1	0	0	0	0	1	0	0	0	10564	1783	62	4	164	4	NOD2	16	50733483	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	485350	50733483	39621270	712	3816											
OGFOD1	55239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56487225	56487225	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttcactgtgtgatcccaaacTtcatccaaagccaagacttc	12	11	5	13	0	2	2	2	1	0	1	5	2	4	2	3	0	2	0	3	0	3	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018233	exon2	c.T205A	p.F69I	CCAAACTTCATCC	.	81	36	118	0	.	.	A	56487225	T	A	56487225	3	1	24	1	0	0	0	0	1	0	0	0	10889	1609	56	5	211	5	OGFOD1	16	56487225	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5753742	56487225	33867528	713	3817											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57719585	57719585	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cgtgaagggacaaccatgtaCgccctctatatcaccgtcca	11	8	8	14	3	2	1	1	1	1	0	3	2	3	2	4	1	2	1	4	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170776	exon11	c.C1287T	p.Y429Y	CATGTACGCCCTC	.	33	18	70	0	.	.	T	57719585	C	T	57719585	2	4	24	1	0	0	0	0	0	0	0	1	6761	547	19	1		1	GPR97	16	57719585	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1232360	57719585	32635168	714	3818											
TEPP	374739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	58019375	58019375	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accgcgcccctatccctgctGcccgcctcagtactgcctca	5	8	7	21	3	2	0	2	0	0	0	3	0	3	0	7	0	4	2	7	0	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_199046	exon6	c.G758A	p.C253Y	CCTGCTGCCCGCC	.	46	16	76	0	.	.	A	58019375	G	A	58019375	3	1	24	1	0	0	0	0	1	0	0	0	15819	1319	46	3	780	3	TEPP	16	58019375	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	299790	58019375	32335378	715	3819											
PDP2	57546	broad.mit.edu	37	chr16	66918662	66918662	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgagcgagaggctcttctacTatgtggcagtgtccctgatg	7	12	13	9	1	2	3	0	2	2	1	3	4	3	3	1	2	2	2	1	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PDP2	NM_020786	exon2	c.T475C	p.Y159H	TTCTACTATGTGG	.	9	3	10	0	.	39	C	66918662	T	C	66918662	3	2	24	1	0	0	0	0	1	0	0	0	11733	1522	53	4	477	4	PDP2	16	66918662	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	8899287	66918662	23436091	716	3820											
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67319000	67319000	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgaacctgcctgccacTgccaccatgcggccactatt	8	9	8	16	1	1	1	1	1	0	0	1	1	1	1	6	1	5	0	6	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001129728	exon13	c.T2077G	p.C693G	TGCCACTGCCACC	.	35	16	61	0	.	.	G	67319000	T	G	67319000	3	3	24	1	0	0	0	0	1	0	0	0	12119	1580	55	4	2123	4	PLEKHG4	16	67319000	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	400338	67319000	23035753	717	3821											
PRMT7	54496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68380156	68380156	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaatgaccaggacagaacTgatcgatacgtccaggctct	13	8	9	11	2	2	3	1	2	1	1	4	5	3	4	2	2	2	1	2	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019023	exon11	c.T1164C	p.T388T	CAGAACTGATCGA	.	20	10	26	0	.	.	C	68380156	T	C	68380156	2	2	24	1	0	0	0	0	0	0	0	1	12593	1567	55	4		4	PRMT7	16	68380156	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1061156	68380156	21974597	718	3822											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69370532	69370532	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggaatctccagtattTccaaaatttctgtgtgccgg	9	13	10	9	1	2	1	0	1	2	0	4	2	3	2	3	2	1	2	3	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032382	exon2	c.A461T	p.E154V	AGTATTTCCAAAA	.	23	5	32	0	.	.	A	69370532	T	A	69370532	3	1	24	1	0	0	0	0	1	0	0	0	3687	1783	62	5	1393	5	COG8	16	69370532	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	990376	69370532	20984221	719	3823											
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69874107	69874107	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggcggagagctgacaatttTcctggacgggccaactgttg	9	9	14	9	2	0	2	0	1	0	1	1	4	1	3	2	4	2	2	2	4	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270454	exon5	c.T419A	p.F140Y	CAATTTTCCTGGA	.	34	16	49	0	.	.	A	69874107	T	A	69874107	3	1	24	1	0	0	0	0	1	0	0	0	17476	1783	62	5	433	5	WWP2	16	69874107	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	503575	69874107	20480646	720	3824											
DDX19A	55308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70404165	70404165	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggctggcagcagagctctcaAaagaaggccaccaggtggct	11	5	14	11	0	1	2	1	0	1	2	2	2	1	2	2	5	2	5	2	5	3	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018332	exon10	c.A1060C	p.K354Q	CTCTCAAAAGAAG	.	30	17	81	0	.	.	C	70404165	A	C	70404165	3	2	24	1	0	0	0	0	1	0	0	0	4369	15	1	4	1098	4	DDX19A	16	70404165	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	530058	70404165	19950588	721	3825											
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71668439	71668439	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	ggcttgttggacatgctcatCgcgggggggtacatcccggc	5	9	16	11	3	1	0	1	0	0	0	3	1	2	1	1	6	2	4	1	6	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052858	exon3	c.C939G	p.I313M	GCTCATCGCGGGG	.	18	7	34	0	.	.	G	71668439	C	G	71668439	3	3	24	1	0	0	0	0	1	0	0	0	9369	874	31	5	949	5	MARVELD3	16	71668439	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1264274	71668439	18686314	722	3826											
ZNF821	55565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71901864	71901864	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggatagcttgtcgctgactGccaaggtctccaggaaaatc	10	10	11	10	1	1	1	0	1	1	0	4	3	1	3	2	3	2	2	2	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001201556	exon4	c.C117T	p.G39G	CTGACTGCCAAGG	.	20	5	36	0	.	.	A	71901864	G	A	71901864	2	1	24	1	0	0	0	0	0	0	0	1	18225	1334	46	3		3	ZNF821	16	71901864	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	233425	71901864	18452889	723	3827											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72831573	72831573	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttggagcaatgccagcacTgcttggattggaggtggtaa	9	10	15	7	0	0	0	0	0	0	0	0	3	0	3	1	5	4	5	1	5	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006885	exon9	c.A5008G	p.S1670G	CAGCACTGCTTGG	.	22	10	38	0	.	.	C	72831573	T	C	72831573	3	2	24	1	0	0	0	0	1	0	0	0	17692	1580	55	4	6111	4	ZFHX3	16	72831573	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	929709	72831573	17523180	724	3828											
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74525044	74525044	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggatgatctcagggctcagaGaaaagtcttccatcaacatg	13	9	10	9	0	4	2	3	1	2	1	6	4	5	3	1	2	1	1	1	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145667	exon8	c.C1304A	p.S435Y	CTCAGAGAAAAGT	.	28	10	46	0	.	.	T	74525044	G	T	74525044	3	4	24	1	0	0	0	0	1	0	0	0	6478	942	33	3	2391	3	GLG1	16	74525044	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1693471	74525044	15829709	725	3829											
RFWD3	55159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74670304	74670304	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggcagctcagagcatcacAgtatgccatgatccggcagt	11	7	11	12	1	2	2	2	1	0	1	3	2	3	2	2	2	3	5	2	2	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018124	exon8	c.T1366G	p.C456G	CATCACAGTATGC	.	37	19	52	0	.	.	C	74670304	A	C	74670304	3	2	24	1	0	0	0	0	1	0	0	0	13313	188	7	4	982	4	RFWD3	16	74670304	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	145260	74670304	15684449	726	3830											
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81248669	81248669	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctgctccagatctgaaggAcgcccggcatcctgggtgca	7	7	12	15	2	1	2	0	1	1	1	3	3	3	3	4	3	2	3	4	3	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001076780	exon3	c.T594A	p.R198R	TGAAGGACGCCCG	.	32	13	51	0	.	.	T	81248669	A	T	81248669	2	4	24	1	0	0	0	0	0	0	0	1	12013	262	10	5		5	PKD1L2	16	81248669	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6578365	81248669	9106084	727	3831											
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	83816933	83816933	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcccatcatggtgacagatTcagggaaaccacccatgacg	12	7	10	12	1	2	3	2	2	0	1	2	4	2	4	3	2	2	0	3	2	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001220488	exon14	c.T2131G	p.S711A	ACAGATTCAGGGA	.	44	24	65	0	.	.	G	83816933	T	G	83816933	3	3	24	1	0	0	0	0	1	0	0	0	3121	1783	62	4	2040	4	CDH13	16	83816933	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2568264	83816933	6537820	728	3832											
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4098471	4098471	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctttgagttctaaatctaGtctgaaaagcagaagcagtg	13	12	10	6	0	4	3	0	2	4	1	4	3	4	3	0	0	2	3	0	0	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257999	exon10	c.C1300G	p.L434V	AATCTAGTCTGAA	.	16	6	46	0	.	.	C	4098471	G	C	4098471	3	2	24	1	0	0	0	0	1	0	0	0	622	1043	36	5	2494	5	ANKFY1	17	4098471	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09		4098471	77096739	729	3833											
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4113218	4113218	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atacagttcctgacattcacTagagacataacacccttctc	13	11	4	13	0	2	2	1	1	1	1	4	3	3	2	2	0	2	1	2	0	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257999	exon5	c.A609C	p.L203L	ATTCACTAGAGAC	.	20	12	44	0	.	.	G	4113218	T	G	4113218	2	3	24	1	0	0	0	0	0	0	0	1	622	1509	53	4		4	ANKFY1	17	4113218	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	14747	4113218	77081992	730	3834											
C1QBP	708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	5341560	5341560	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttttctttcctccttaattTcatcactcaggaaatcaaca	11	17	2	11	0	5	0	4	0	1	0	7	1	7	1	2	1	1	0	2	1	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001212	exon2	c.A266C	p.E89A	TTAATTTCATCAC	.	75	27	110	0	.	.	G	5341560	T	G	5341560	3	3	24	1	0	0	0	0	1	0	0	0	1969	1783	62	4	602	4	C1QBP	17	5341560	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1228342	5341560	75853650	731	3835											
FAM64A	54478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6351018	6351018	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tgcccacccattacggcgatCaaggcgggaggctgccttcc	7	7	12	15	3	1	0	1	0	0	0	2	2	2	1	4	4	3	1	4	4	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019013	exon3	c.C530T	p.S177L	GGCGATCAAGGCG	.	28	15	57	0	.	.	T	6351018	C	T	6351018	3	4	24	1	0	0	0	0	1	0	0	0	5633	838	29	3	536	3	FAM64A	17	6351018	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1009458	6351018	74844192	732	3836											
ACADVL	37	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7124970	7124983	+	Frame_Shift_Del	DEL	GAAAGAAAAATACC	GAAAGAAAAATACC	-																															ctctttggcacaaaggcccaGaaagaaaaatacctccccaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAAAGAAAAATACC	GAAAGAAAAATACC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270447	exon8	c.659_672del	p.220_224del	GGCCCAGAAAGAA	.	20	9	41	0	.	.	-	7124983	GAAAGAAAAATACC	-	7124970	7	5	24	1	0	1	0	1	0	0	0	0	116	933	33	0	617	0	ACADVL	17	7124970	Frame_Shift_Del	DEL	GAAAGAAAAATACC	TCGA-W5-AA39-01A-11D-A417-09	773952	7124970	74070240	733	3837											
PLSCR3	57048	hgsc.bcm.edu	37	chr17	7297797	7297797	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtgcccccgctcaccTggagcccccagaagagcccg	6	5	10	20	2	2	2	1	0	1	2	2	3	2	3	7	1	3	1	7	1	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTCACCTGGAGCC	.	14	6	35	0	.	.	C	7297797	T	C	7297797	1	2	24	0	1	0	0	0	0	0	0	0	12159	1594	55	4		4	PLSCR3	17	7297797	RNA	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	172827	7297797	73897413	734	3838											
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	7533491	7533491	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgagtggacagtggctgattAtggagagcagaggcccactg	10	7	16	8	1	0	3	0	1	0	2	0	6	0	4	1	4	1	2	1	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001040	exon1	c.A1C	p.M1L	CTGATTATGGAGA	.	18	7	27	0	.	.	C	7533491	A	C	7533491	3	2	24	1	0	0	0	0	1	0	0	0	14324	449	16	4	3	4	SHBG	17	7533491	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	235694	7533491	73661719	735	3839											
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7840511	7840511	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctggaacaaagcctttcTgaggccatggaggccctgaa	10	7	12	12	1	1	2	0	2	1	0	1	4	1	4	4	4	2	0	4	4	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037144	exon7	c.T858G	p.S286S	CCTTTCTGAGGCC	.	60	31	74	0	.	.	G	7840511	T	G	7840511	2	3	24	1	0	0	0	0	0	0	0	1	3674	1567	55	4		4	CNTROB	17	7840511	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	307020	7840511	73354699	736	3840											
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7976095	7976095	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cgggaagcgcgctcctaaatAgaaatgctgttctcaatcag	12	9	10	10	3	2	1	2	0	1	1	4	2	3	2	1	1	2	3	1	1	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001139	exon15	c.T2100C	p.S700S	CTAAATAGAAATG	.	41	20	37	0	.	.	G	7976095	A	G	7976095	2	3	24	1	0	0	0	0	0	0	0	1	533	407	15	4		4	ALOX12B	17	7976095	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	135584	7976095	73219115	737	3841											
PER1	5187	broad.mit.edu;bcgsc.ca	37	chr17	8051527	8051527	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacatcctggaagaggcagcTgggtgtgtgccgcgtagtga	8	8	16	9	2	0	2	0	1	0	1	1	3	1	3	2	3	2	3	2	3	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PER1	NM_002616	exon9	c.A1099C	p.S367R	GGCAGCTGGGTGT	.	12	6	19	0	.	104	G	8051527	T	G	8051527	3	3	24	1	0	0	0	0	1	0	0	0	11776	1580	55	4	2833	4	PER1	17	8051527	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	75432	8051527	73143683	738	3842											
PER1	5187	broad.mit.edu	37	chr17	8051559	8051559	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtagtgaaaatcctcttgTcagggggtatccggggagct	8	10	15	8	2	2	1	1	1	1	0	4	2	4	2	2	4	1	3	2	4	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PER1	NM_002616	exon9	c.A1067G	p.D356G	CTCTTGTCAGGGG	.	12	4	16	0	.	104	C	8051559	T	C	8051559	3	2	24	1	0	0	0	0	1	0	0	0	11776	1667	58	4	2865	4	PER1	17	8051559	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	32	8051559	73143651	739	3843											
NDEL1	81565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8354204	8354204	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aagatggactccgccgtccaAgcatcactttctttgccagc	9	10	8	14	2	2	1	1	0	1	1	4	2	4	2	4	1	3	1	4	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001025579	exon6	c.A633C	p.Q211H	CGTCCAAGCATCA	.	35	18	54	0	.	.	C	8354204	A	C	8354204	3	2	24	1	0	0	0	0	1	0	0	0	10291	69	3	4	651	4	NDEL1	17	8354204	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	302645	8354204	72841006	740	3844											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15976773	15976773	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctgatacaggagactcccTcattgacatcccttgcttta	9	13	7	12	0	1	3	1	2	0	1	3	4	3	3	2	1	3	2	2	1	2	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001190440	exon27	c.A3829G	p.R1277G	ACTCCCTCATTGA	.	59	28	80	0	.	.	C	15976773	T	C	15976773	3	2	24	1	0	0	0	0	1	0	0	0	10282	1550	54	4	3617	4	NCOR1	17	15976773	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7622569	15976773	65218437	741	3845											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17050634	17050634	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttcttcccctttagtGgaagaaacactggtttgtcc	7	17	7	10	0	2	1	0	0	2	1	4	2	4	2	3	2	1	1	3	2	3	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015134	exon11	c.G1208T	p.W403L	TTTAGTGGAAGAA	.	45	21	69	0	.	.	T	17050634	G	T	17050634	3	4	24	1	0	0	0	0	1	0	0	0	9792	1362	47	3	1250	3	MPRIP	17	17050634	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1073861	17050634	64144576	742	3846											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17722483	17722483	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccagctgcgagccggttgatAggcagcttctccgcatctac	7	9	11	14	3	2	1	0	1	2	0	3	2	2	1	3	2	5	5	3	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005291	exon6	c.T1002C	p.P334P	GTTGATAGGCAGC	.	18	5	37	0	.	.	G	17722483	A	G	17722483	2	3	24	1	0	0	0	0	0	0	0	1	15197	407	15	4		4	SREBF1	17	17722483	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	671849	17722483	63472727	743	3847											
DRG2	1819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18009784	18009784	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtcactcgccagccagttcaAgtacgccctggtgtgggtga	7	9	13	12	2	2	1	2	1	0	0	3	1	2	1	3	2	2	2	3	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001388	exon12	c.A992C	p.K331T	AGTTCAAGTACGC	.	20	6	41	0	.	.	C	18009784	A	C	18009784	3	2	24	1	0	0	0	0	1	0	0	0	4788	72	3	4	1038	4	DRG2	17	18009784	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	287301	18009784	63185426	744	3848											
FLII	2314	broad.mit.edu	37	chr17	18156676	18156676	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agccatgaactcttccaggtTggtgagcttgccaatgcctg	8	11	11	11	0	1	2	0	2	1	0	2	2	2	2	4	2	5	2	4	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FLII	NM_002018	exon9	c.A952T	p.N318Y	CCAGGTTGGTGAG	.	11	4	30	0	.	79	A	18156676	T	A	18156676	3	1	24	1	0	0	0	0	1	0	0	0	5958	1812	63	5	2945	5	FLII	17	18156676	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	146892	18156676	63038534	745	3849											
SLC5A10	125206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18880179	18880179	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acccccaggtcatcgtgcagCgatcactgtcagcccgggac	8	6	11	16	3	3	0	3	0	0	0	4	2	3	1	3	2	3	1	3	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042450	exon9	c.C859A	p.R287R	GTGCAGCGATCAC	.	33	7	35	0	.	.	A	18880179	C	A	18880179	2	1	24	1	0	0	0	0	0	0	0	1	14717	760	27	2		2	SLC5A10	17	18880179	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	723503	18880179	62315031	746	3850											
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19606450	19606450	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gctgatttttcaggatgcttAtcagggtgcccaggaccagg	8	11	13	9	0	2	1	2	1	0	0	2	3	2	3	2	4	2	2	2	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152908	exon12	c.T1157G	p.I386R	ATGCTTATCAGGG	.	27	10	68	0	.	.	C	19606450	A	C	19606450	3	2	24	1	0	0	0	0	1	0	0	0	14703	449	16	4	675	4	SLC47A2	17	19606450	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	726271	19606450	61588760	747	3851											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27005649	27005649	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agagtctggcagtgggatgaAaaggtaatgtagatccgtgg	12	9	16	4	1	1	3	0	1	1	2	2	4	2	4	1	4	0	3	1	4	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003170	exon10	c.A1203C	p.E401D	GGATGAAAAGGTA	.	41	15	82	0	.	.	C	27005649	A	C	27005649	3	2	24	1	0	0	0	0	1	0	0	0	15456	11	1	4	1237	4	SUPT6H	17	27005649	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	7399199	27005649	54189561	748	3852											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27493528	27493528	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggcgctctcatcccggctaCgctgggagaaggaaaagcgc	10	5	14	12	4	1	1	1	0	1	1	3	3	2	2	1	4	2	3	1	4	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_078471	exon2	c.G431A	p.R144H	CGGCTACGCTGGG	.	35	16	37	0	.	.	T	27493528	C	T	27493528	3	4	24	1	0	0	0	0	1	0	0	0	10113	536	19	1	5897	1	MYO18A	17	27493528	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	487879	27493528	53701682	749	3853											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	29220580	29220580	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaacaaaagaaaacatTggtaatattagatgatagtg	22	9	8	2	0	0	4	0	1	0	3	0	4	0	4	0	1	2	1	0	1	10	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024857	exon21	c.T4709A	p.L1570X	AAACATTGGTAAT	.	26	11	47	0	.	.	A	29220580	T	A	29220580	4	1	24	1	0	0	0	0	0	1	0	0	1075	1821	63	5	4791	5	ATAD5	17	29220580	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1727052	29220580	51974630	750	3854											
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37687154	37687154	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggttcagtgccattgacaCtgatgaacgaaactctggtc	11	10	11	9	1	2	3	1	3	1	0	3	4	2	3	1	2	3	1	1	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016507	exon14	c.C4058T	p.T1353I	TTGACACTGATGA	.	29	12	60	0	.	.	T	37687154	C	T	37687154	3	4	24	1	0	0	0	0	1	0	0	0	3150	565	20	3	4112	3	CDK12	17	37687154	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	8466574	37687154	43508056	751	3855											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	37883077	37883077	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttcctccacagaatgaggacTtgggcccagccagtcccttg	8	9	10	14	0	0	2	0	1	0	1	3	3	3	3	5	2	1	0	5	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004448	exon25	c.T2980G	p.L994V	GAGGACTTGGGCC	.	18	8	34	0	.	.	G	37883077	T	G	37883077	3	3	24	1	0	0	0	0	1	0	0	0	5234	1606	56	4	3078	4	ERBB2	17	37883077	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	195923	37883077	43312133	752	3856											
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38574040	38574040	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	tacctgcaatggtgacacttCcatggtgacggtcgtgaagg	9	10	13	9	2	0	3	0	3	0	0	2	3	1	3	2	4	2	1	2	4	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001067	exon1	c.G4A	p.E2K	ACACTTCCATGGT	.	74	30	94	0	.	.	T	38574040	C	T	38574040	3	4	24	1	0	0	0	0	1	0	0	0	16426	864	30	3	4731	3	TOP2A	17	38574040	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	690963	38574040	42621170	753	3857											
KRT10	3858	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	38976869	38976869	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	catccagcaccctacgcaggCcgttgatgtcagcctccacg	8	7	9	17	3	1	1	1	1	0	0	3	1	3	1	5	1	3	3	5	1	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000421	exon3	c.G761T	p.G254V	CGCAGGCCGTTGA	.	28	12	40	0	.	.	A	38976869	C	A	38976869	3	1	24	1	0	0	0	0	1	0	0	0	8491	739	26	3	1017	3	KRT10	17	38976869	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	402829	38976869	42218341	754	3858											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40049390	40049390	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcatgccccacacaatGgccttggtgtggcggctgaa	7	9	13	12	1	1	1	0	1	1	0	1	1	1	1	3	4	2	2	3	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001096	exon15	c.C1497T	p.A499A	CACAATGGCCTTG	.	27	15	39	0	.	.	A	40049390	G	A	40049390	2	1	24	1	0	0	0	0	0	0	0	1	143	1335	47	3		3	ACLY	17	40049390	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1072521	40049390	41145820	755	3859											
NAGLU	4669	hgsc.bcm.edu	37	chr17	40689478	40689478	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtggtgggactgggcccGctgggagcgagagatagact	7	7	19	8	3	0	2	0	0	0	2	0	6	0	4	1	4	1	1	1	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NAGLU,colon,carcinoma,0,1	NAGLU	NM_000263	exon2	c.G446A	p.R149H	GGGCCCGCTGGGA	.	26	2	51	0	.	0	A	40689478	G	A	40689478	3	1	24	1	0	0	0	0	1	0	0	0	10191	1087	38	1	452	1	NAGLU	17	40689478	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	640088	40689478	40505732	756	3860											
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40823409	40823409	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agtcgatggccacagcacagGcaccagcccccggacagtgc	10	3	12	16	2	0	0	0	0	0	0	1	2	0	1	4	3	3	2	4	3	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024927	exon8	c.C1244T	p.A415V	GCACAGGCACCAG	.	57	22	113	0	.	.	A	40823409	G	A	40823409	3	1	24	1	0	0	0	0	1	0	0	0	12126	1203	42	3	1161	3	PLEKHH3	17	40823409	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	133931	40823409	40371801	757	3861											
WNK4	65266	hgsc.bcm.edu	37	chr17	40946837	40946838	+	Frame_Shift_Ins	INS	-	-	TC																															gcacaggagctggacagcctINStctccacctcctcatcttct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032387	exon14	c.2398_2399insTC	p.F800fs	ACAGCCTTCTCCA	.	39	0	56	0	.	.	TC	40946838	-	TC	40946837	7	5	24	1	0	1	1	0	0	0	0	0	17440	1609	56	0	2452	0	WNK4	17	40946837	Frame_Shift_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	123428	40946837	40248373	758	3862											
RUNDC3A	10900	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42395541	42395541	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gctgcaagtccctggcgagcTtcaaatccaacgagtgcctg	9	8	11	13	2	1	0	1	0	0	0	3	2	3	0	3	1	4	3	3	1	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144825	exon11	c.T1276G	p.F426V	GCGAGCTTCAAAT	.	27	10	82	0	.	.	G	42395541	T	G	42395541	3	3	24	1	0	0	0	0	1	0	0	0	13796	1609	56	4	1342	4	RUNDC3A	17	42395541	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1448704	42395541	38799669	759	3863											
ABI3	51225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47299925	47299925	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gccctgcagtggtgacactgTacccatacaccagccagaag	11	6	10	14	0	0	2	0	1	0	1	0	2	0	2	4	1	4	2	4	1	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016428	exon8	c.T949C	p.Y317H	ACACTGTACCCAT	.	24	10	32	0	.	.	C	47299925	T	C	47299925	3	2	24	1	0	0	0	0	1	0	0	0	90	1638	57	4	979	4	ABI3	17	47299925	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4904384	47299925	33895285	760	3864											
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48745811	48745811	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	gccagtgtgtctctgaaacgGatccagcaattcctgagcca	10	9	10	12	1	1	2	0	2	1	0	4	3	3	3	4	1	3	1	4	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003786	exon14	c.G1803C	p.R601R	GAAACGGATCCAG	.	46	16	82	0	.	.	C	48745811	G	C	48745811	2	2	24	1	0	0	0	0	0	0	0	1	54	1161	41	5		5	ABCC3	17	48745811	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1445886	48745811	32449399	761	3865											
ABCC3	8714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48753044	48753044	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gacagggtcggcctgtacccCggaggcacctgggtccatca	7	6	14	14	2	1	0	1	0	0	0	3	2	2	1	5	5	1	2	5	5	1	1	rs371874263	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ABCC3	NM_003786	exon21	c.C2767A	p.R923R	GTACCCCGGAGGC	.	13	8	24	0	.	138	A	48753044	C	A	48753044	2	1	24	1	0	0	0	0	0	0	0	1	54	643	23	2		2	ABCC3	17	48753044	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7233	48753044	32442166	762	3866											
DHX40	79665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57643997	57643997	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tgttattacagaagagaaagGatgcacgtcccaggagggag	14	7	14	6	1	0	2	0	0	0	2	1	6	1	5	1	3	2	2	1	3	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024612	exon2	c.G122A	p.G41E	AGAAAGGATGCAC	.	58	18	103	0	.	.	A	57643997	G	A	57643997	3	1	24	1	0	0	0	0	1	0	0	0	4540	1174	41	3	128	3	DHX40	17	57643997	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	8890953	57643997	23551213	763	3867											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	59952332	59952332	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctatcatcaggtcattctGagtatacttttgttgtcgta	9	18	7	7	1	5	1	3	1	2	0	6	1	5	1	0	1	1	3	0	1	4	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020748	exon19	c.C2548A	p.Q850K	CATTCTGAGTATA	.	52	20	58	0	.	.	T	59952332	G	T	59952332	3	4	24	1	0	0	0	0	1	0	0	0	7822	1299	45	3	1094	3	INTS2	17	59952332	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	2308335	59952332	21242878	764	3868											
DCAF7	10238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	61660866	61660866	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttcttgttcaccaacaggtcTatgatattgcatttagccgg	9	15	8	9	1	3	1	1	1	2	0	3	1	3	1	2	2	3	2	2	2	4	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005828	exon5	c.T532C	p.Y178H	CAGGTCTATGATA	.	63	27	108	0	.	.	C	61660866	T	C	61660866	3	2	24	1	0	0	0	0	1	0	0	0	4299	1522	53	4	550	4	DCAF7	17	61660866	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1708534	61660866	19534344	765	3869											
ERN1	2081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62142632	62142632	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggctggtagagtatttcccAacatacagagtgggcctagg	11	9	13	8	0	0	2	0	0	0	2	1	2	1	2	2	4	2	3	2	4	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001433	exon9	c.T858C	p.V286V	TTTCCCAACATAC	.	24	9	63	0	.	.	G	62142632	A	G	62142632	2	3	24	1	0	0	0	0	0	0	0	1	5265	117	5	4		4	ERN1	17	62142632	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	481766	62142632	19052578	766	3870											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	62272276	62272283	+	Frame_Shift_Del	DEL	GATTTTCT	GATTTTCT	-																															ttgctgtctgagaggtcataGattttctggctgatgtaggt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GATTTTCT	GATTTTCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018469	exon3	c.1818_1825del	p.606_609del	GTCATAGATTTTC	.	37	11	68	0	.	.	-	62272283	GATTTTCT	-	62272276	7	5	24	1	0	1	0	1	0	0	0	0	15840	932	33	0	1620	0	TEX2	17	62272276	Frame_Shift_Del	DEL	GATTTTCT	TCGA-W5-AA39-01A-11D-A417-09	129644	62272276	18922934	767	3871											
AXIN2	8313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	63526145	63526145	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cggccttcatacatcgggagCaccgtctcatcctcccagat	8	9	8	16	3	2	1	2	0	1	1	6	2	4	2	4	2	2	1	4	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004655	exon11	c.G2481T	p.V827V	CGGGAGCACCGTC	.	22	6	38	0	.	.	A	63526145	C	A	63526145	2	1	24	1	0	0	0	0	0	0	0	1	1235	697	25	3		3	AXIN2	17	63526145	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1253869	63526145	17669065	768	3872											
ABCA9	10350	broad.mit.edu;bcgsc.ca	37	chr17	67014691	67014706	+	Frame_Shift_Del	DEL	GGGATAAAGCTAATAC	GGGATAAAGCTAATAC	-																															atagatgttccaaaagttgaGggataaagctaataccaaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ABCA9	NM_080283	exon20	c.2615_2630del	p.872_877del	AGTTGAGGGATAA	.	23	6	49	0	.	192	-	67014706	GGGATAAAGCTAATAC	-	67014691	7	5	24	1	0	1	0	1	0	0	0	0	39	1000	35	0	2324	0	ABCA9	17	67014691	Frame_Shift_Del	DEL	GGGATAAAGCTAATAC	TCGA-W5-AA39-01A-11D-A417-09	3488546	67014691	14180519	769	3873											
CDR2L	30850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72997553	72997553	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	ccaaccacaggctggtgctgGagagtaaggctgcccagcag	10	5	14	12	0	0	1	0	0	0	1	0	2	0	1	3	4	4	5	3	4	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014603	exon3	c.G310C	p.E104Q	GTGCTGGAGAGTA	.	22	11	57	0	.	.	C	72997553	G	C	72997553	3	2	24	1	0	0	0	0	1	0	0	0	3195	1175	41	5	320	5	CDR2L	17	72997553	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	5982862	72997553	8197657	770	3874											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73738739	73738739	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccctctttatccggcctgaGgatgacgacgagaagcagct	9	8	11	13	3	1	3	0	2	1	1	2	6	2	4	4	2	2	2	4	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005731	exon25	c.G2859C	p.E953D	GCCTGAGGATGAC	.	28	14	49	0	.	.	C	73738739	G	C	73738739	3	2	24	1	0	0	0	0	1	0	0	0	7941	991	35	5	2953	5	ITGB4	17	73738739	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	741186	73738739	7456471	771	3875											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	73751914	73751914	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gcagggctacagtgtggagtAccagctgctgaacggcggtg	8	7	17	9	2	0	1	0	1	0	0	0	2	0	2	1	4	5	5	1	4	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000213	exon35	c.A4691G	p.Y1564C	TGGAGTACCAGCT	.	23	10	20	0	.	.	G	73751914	A	G	73751914	3	3	24	1	0	0	0	0	1	0	0	0	7941	391	14	4	4988	4	ITGB4	17	73751914	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	13175	73751914	7443296	772	3876											
WBP2	23558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	73847681	73847681	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggtagacagtgcctttctTggtccctttgaaggcttctg	7	14	11	9	0	2	2	0	1	2	1	3	2	3	2	2	3	1	2	2	3	3	5	rs149300980	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012478	exon2	c.A136T	p.K46X	CTTTCTTGGTCCC	.	40	16	58	0	.	.	A	73847681	T	A	73847681	4	1	24	1	0	0	0	0	0	1	0	0	17319	1821	63	5	677	5	WBP2	17	73847681	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	95767	73847681	7347529	773	3877											
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74936851	74936852	+	Missense_Mutation	DNP	GC	GC	TT																															ctacgcggagaacttcatcgGcaagccccacgtgtggacag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198955	exon13	c.C1797T	p.G599V	CATCGGCAAGCCC	.	23	4	33	0	.	.	TT	74936852	GC	TT	74936851	3	4	24	1	0	0	0	0	1	0	0	0	9599	1203	42	3	1918	3	MGAT5B	17	74936851	Missense_Mutation	DNP	GC	TCGA-W5-AA39-01A-11D-A417-09	1089170	74936851	6258359	774	3878											
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	79514062	79514062	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggctgccaggctcccgacaAgtttccagaaaagtggccac	10	7	11	13	1	0	1	0	0	0	1	2	2	2	1	4	3	1	3	4	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025161	exon5	c.T2046G	p.T682T	CCGACAAGTTTCC	.	12	4	19	0	.	.	C	79514062	A	C	79514062	2	2	24	1	0	0	0	0	0	0	0	1	1886	59	3	4		4	C17orf70	17	79514062	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4577211	79514062	1681148	775	3879											
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79563165	79563165	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tagccactgcagtaacaaacTtggatccaaaatgtccgtct	13	10	7	11	1	1	0	0	0	1	0	3	1	3	1	3	1	4	2	3	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017921	exon11	c.A1097C	p.K366T	ACAAACTTGGATC	.	40	18	80	0	.	.	G	79563165	T	G	79563165	3	3	24	1	0	0	0	0	1	0	0	0	10634	1609	56	4	757	4	NPLOC4	17	79563165	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	49103	79563165	1632045	776	3880											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3067439	3067439	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatggtgaagtacgcggtccTcccagcctcgaacttgaggt	8	9	13	11	3	0	2	0	2	0	0	3	4	2	2	3	3	3	1	3	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4879T	p.R1627W	CGGTCCTCCCAGC	.	27	11	59	0	.	.	A	3067439	T	A	3067439	3	1	24	1	0	0	0	0	1	0	0	0	10139	1550	54	5	182	5	MYOM1	18	3067439	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		3067439	75009809	777	3881											
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3067471	3067471	+	Missense_Mutation	SNP	T	T	A																															acttgaggttgcagtggtcgTctgaggccagggccttctcg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4847T	p.D1616V	TGGTCGTCTGAGG	.	22	10	48	0	.	.	A	3067471	T	A	3067471	3	1	24	1	0	0	0	0	1	0	0	0	10139	1667	58	5	214	5	MYOM1	18	3067471	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	32	3067471	75009777	778	3882	36	2									
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3067473	3067473	+	Silent	SNP	T	T	A																															ttgaggttgcagtggtcgtcTgaggccagggccttctcgtt																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4845T	p.S1615S	GTCGTCTGAGGCC	.	20	9	51	0	.	.	A	3067473	T	A	3067473	2	1	24	1	0	0	0	0	0	0	0	1	10139	1567	55	5		5	MYOM1	18	3067473	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2	3067473	75009775	779	3883	36	2									
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3094261	3094261	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atccaaaaccggacctggccTttctccaaaatttcaactgc	12	10	5	14	1	2	0	1	0	1	0	4	1	3	1	5	2	3	0	5	2	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon26	c.A3771C	p.K1257N	CTGGCCTTTCTCC	.	132	56	233	0	.	.	G	3094261	T	G	3094261	3	3	24	1	0	0	0	0	1	0	0	0	10139	1606	56	4	1338	4	MYOM1	18	3094261	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	26788	3094261	74982987	780	3884											
PPP4R1	9989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	9559465	9559465	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtctctctcaggcagtgccaAttctgtcttccgagtgtcaa	7	13	9	12	1	5	0	2	0	4	0	8	1	6	0	2	1	1	1	2	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042388	exon14	c.T1980G	p.N660K	GTGCCAATTCTGT	.	29	15	33	0	.	.	C	9559465	A	C	9559465	3	2	24	1	0	0	0	0	1	0	0	0	12452	98	4	4	900	4	PPP4R1	18	9559465	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6465204	9559465	68517783	781	3885											
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21694602	21694602	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aaattcaacatgtctgtctgTatgaaattggtaaatgtgaa	15	14	8	4	0	3	2	1	2	2	0	3	2	3	2	0	1	1	2	0	1	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135993	exon7	c.T1069A	p.Y357N	TGTCTGTATGAAA	.	37	16	59	0	.	.	A	21694602	T	A	21694602	3	1	24	1	0	0	0	0	1	0	0	0	16771	1638	57	5	1095	5	TTC39C	18	21694602	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	12135137	21694602	56382646	782	3886											
CDH2	1000	broad.mit.edu	37	chr18	25565702	25565702	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	taaatagatctgcagcgttcCtgttccactcataggaggaa	12	11	9	9	1	2	1	1	0	1	1	4	3	4	3	2	2	2	3	2	2	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CDH2	NM_001792	exon12	c.G1765A	p.G589R	GCGTTCCTGTTCC	.	14	4	32	0	.	194	T	25565702	C	T	25565702	3	4	24	1	0	0	0	0	1	0	0	0	3127	690	24	3	975	3	CDH2	18	25565702	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3871100	25565702	52511546	783	3887											
TTR	7276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	29172884	29172884	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggtgaatccaagtgtcctcTgatggtcaaagttctagatg	10	12	11	8	1	3	3	1	2	2	1	5	3	5	3	2	2	0	1	2	2	4	2	rs121918094	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000371	exon2	c.T95G	p.L32R	GTCCTCTGATGGT	.	39	14	43	0	.	.	G	29172884	T	G	29172884	3	3	24	1	0	0	0	0	1	0	0	0	16800	1580	55	4	101	4	TTR	18	29172884	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3607182	29172884	48904364	784	3888											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	31158612	31158612	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaacatgaaagacaagaggaAgaagaaggaccgcacctggg	19	2	13	7	1	0	5	0	1	0	4	0	7	0	7	2	3	1	1	2	3	6	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030632	exon1	c.A17G	p.K6R	AGAGGAAGAAGAA	.	110	41	176	0	.	.	G	31158612	A	G	31158612	3	3	24	1	0	0	0	0	1	0	0	0	1067	72	3	4	19	4	ASXL3	18	31158612	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1985728	31158612	46918636	785	3889											
RNF165	494470	ucsc.edu	37	chr18	44015312	44015312	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	catcccagcttcgacttcggCcaactgcagacacctcagcc	9	7	7	18	2	1	1	1	0	0	1	4	2	2	1	4	1	4	2	4	1	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RNF165	NM_152470	exon3	c.C438T	p.G146G	CTTCGGCCAACTG	.	25	4	34	0	.	34	T	44015312	C	T	44015312	2	4	24	1	0	0	0	0	0	0	0	1	13508	726	26	3		3	RNF165	18	44015312	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	12856700	44015312	34061936	786	3890											
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr18	48703410	48703410	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcgcggctaggaggaaCaggattggaggagagccacg	10	6	17	8	3	1	1	0	0	1	1	1	6	1	5	1	6	3	1	1	6	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016626	exon2	c.G1291A	p.V431I	GAGGAACAGGATT	.	12	6	26	0	.	.	T	48703410	C	T	48703410	3	4	24	1	0	0	0	0	1	0	0	0	9561	478	17	3	692	3	MEX3C	18	48703410	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	4688098	48703410	29373838	787	3891											
RAB27B	5874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	52556641	52556641	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaagaaatgtatctgCtagactctacatagaaactg	16	9	8	8	0	2	4	0	0	2	4	2	5	2	4	1	0	3	2	1	0	7	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004163	exon6	c.C654A	p.C218X	TATCTGCTAGACT	.	36	11	68	0	.	.	A	52556641	C	A	52556641	4	1	24	1	0	0	0	0	0	1	0	0	12967	805	28	3	672	3	RAB27B	18	52556641	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	3853231	52556641	25520607	788	3892											
ATP8B1	5205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	55336582	55336582	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ttcaatctcctcatatacttTatccagagcttcgtcccggt	8	15	5	13	2	3	1	2	0	1	1	7	1	5	1	3	1	2	1	3	1	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005603	exon18	c.A2065T	p.K689X	ATACTTTATCCAG	.	109	47	156	0	.	.	A	55336582	T	A	55336582	4	1	24	1	0	0	0	0	0	1	0	0	1192	1763	61	5	1734	5	ATP8B1	18	55336582	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2779941	55336582	22740666	789	3893											
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	57106936	57106936	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccctccggccttgcttaatGtgggacagatcaggagatgg	8	9	13	11	1	1	2	1	0	0	2	2	4	2	3	4	4	1	1	4	4	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133459	exon8	c.C888A	p.H296Q	CTTAATGTGGGAC	.	37	4	48	0	.	.	T	57106936	G	T	57106936	3	4	24	1	0	0	0	0	1	0	0	0	2749	1368	48	3	348	3	CCBE1	18	57106936	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1770354	57106936	20970312	790	3894											
CDH19	28513	hgsc.bcm.edu	37	chr18	64172343	64172343	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tataggctcctgatctcagcGcttgtggttttccgagtctt	5	16	10	10	2	2	1	1	1	2	0	5	2	4	1	2	2	1	3	2	2	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CDH19,right_lower_lobe,carcinoma,0,1	CDH19	NM_021153	exon12	c.C2025A	p.S675R	CTCAGCGCTTGTG	.	33	3	38	0	.	0	T	64172343	G	T	64172343	3	4	24	1	0	0	0	0	1	0	0	0	3126	1078	38	2	297	2	CDH19	18	64172343	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	7065407	64172343	13904905	791	3895											
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	76903819	76903819	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaaagtgcaagttaagAgttcagacatacaagttgga	17	9	11	4	0	1	2	1	0	0	2	1	3	1	3	0	2	2	5	0	2	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198531	exon6	c.A685T	p.S229C	GTTAAGAGTTCAG	.	63	27	129	0	.	.	T	76903819	A	T	76903819	3	4	24	1	0	0	0	0	1	0	0	0	1197	304	11	5	707	5	ATP9B	18	76903819	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	12731476	76903819	1173429	792	3896											
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1428934	1428956	+	Frame_Shift_Del	DEL	GCTGCCAATGGCTGGGCAGGCCA	GCTGCCAATGGCTGGGCAGGCCA	-																															ggagccgggttgtgcccaacGctgccaatggctgggcaggc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GCTGCCAATGGCTGGGCAGGCCA	GCTGCCAATGGCTGGGCAGGCCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018959	exon8	c.639_661del	p.213_221del	CCCAACGCTGCCA	.	90	14	142	0	.	.	-	1428956	GCTGCCAATGGCTGGGCAGGCCA	-	1428934	7	5	24	1	0	1	0	1	0	0	0	0	4268	1087	38	0	670	0	DAZAP1	19	1428934	Frame_Shift_Del	DEL	GCTGCCAATGGCTGGGCAGGCCA	TCGA-W5-AA39-01A-11D-A417-09		1428934	57700049	793	3897											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1490288	1490288	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccacagcccgggggcGgacaagggccagggccaaga	10	0	15	16	2	0	1	0	0	0	1	0	2	0	2	6	5	1	0	6	5	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017573	exon1	c.C58T	p.R20C	GGGGGCGGACAAG	.	66	28	89	0	.	.	A	1490288	G	A	1490288	3	1	24	1	0	0	0	0	1	0	0	0	11649	1116	39	1	2269	1	PCSK4	19	1490288	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	61354	1490288	57638695	794	3898											
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1811727	1811727	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgggagtctgagcggggccAgtgcccattcaccgcatgag	7	7	15	12	2	2	2	1	2	1	0	2	3	2	3	3	3	2	1	3	3	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138813	exon2	c.T9A	p.T3T	GGGGCCAGTGCCC	.	14	10	16	0	.	.	T	1811727	A	T	1811727	2	4	24	1	0	0	0	0	0	0	0	1	1194	175	7	5		5	ATP8B3	19	1811727	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	321439	1811727	57317256	795	3899											
GIPC3	126326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3589910	3589910	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcattcgggaccccgagctgGgtaaggggccagggtaagcc	8	5	17	11	2	0	0	0	0	0	0	1	2	0	1	4	5	2	4	4	5	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133261	exon5	c.G787T	p.A263S	GAGCTGGGTAAGG	.	40	20	66	0	.	.	T	3589910	G	T	3589910	3	4	24	1	0	0	0	0	1	0	0	0	6436	1246	43	3	805	3	GIPC3	19	3589910	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1778183	3589910	55539073	796	3900											
STAP2	55620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4327373	4327373	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccttgtaatgccggacCacgtgcgtcctgcaccagga	8	9	10	14	3	1	0	1	0	0	0	2	2	2	2	5	2	3	2	5	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001013841	exon7	c.G600A	p.V200V	CCGGACCACGTGC	.	16	10	36	0	.	.	T	4327373	C	T	4327373	2	4	24	1	0	0	0	0	0	0	0	1	15309	581	21	3		3	STAP2	19	4327373	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	737463	4327373	54801610	797	3901											
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4442934	4442934	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcagaggtccaagcccCgtgtggagccgcttccggag	6	6	14	15	3	0	1	0	0	0	1	2	3	2	3	6	3	3	2	6	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005483	exon15	c.C2783T	p.P928L	AAGCCCCGTGTGG	.	43	12	94	0	.	.	T	4442934	C	T	4442934	3	4	24	1	0	0	0	0	1	0	0	0	3333	652	23	1	2841	1	CHAF1A	19	4442934	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	115561	4442934	54686049	798	3902											
MCOLN1	57192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7591678	7591678	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctgacgtgtcactgggccGgtatgcgtatgtccgtggtg	4	11	16	10	4	1	1	1	1	0	0	2	1	2	1	3	3	1	2	3	3	2	2	rs147878118	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020533	exon4	c.G437C	p.R146P	TGGGCCGGTATGC	.	36	17	58	0	.	.	C	7591678	G	C	7591678	3	2	24	1	0	0	0	0	1	0	0	0	9445	1116	39	5	451	5	MCOLN1	19	7591678	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	3148744	7591678	51537305	799	3903											
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8056616	8056616	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcatcctgggtcatgttctgAgggaggtagttgacgatcaa	9	12	13	7	1	4	2	3	2	1	0	5	4	5	3	1	3	0	3	1	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001419	exon2	c.T84A	p.P28P	GTTCTGAGGGAGG	.	52	21	67	0	.	.	T	8056616	A	T	8056616	2	4	24	1	0	0	0	0	0	0	0	1	5077	291	11	5		5	ELAVL1	19	8056616	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	464938	8056616	51072367	800	3904											
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8467132	8467132	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacctgcgccacctgcgggcTgtgcccactgacgaggcccg	5	5	14	17	4	0	1	0	1	0	0	0	3	0	1	5	2	3	1	5	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004218	exon3	c.T399C	p.A133A	GCGGGCTGTGCCC	.	17	5	26	0	.	.	C	8467132	T	C	8467132	2	2	24	1	0	0	0	0	0	0	0	1	12944	1567	55	4		4	RAB11B	19	8467132	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	410516	8467132	50661851	801	3905											
MARCH2	51257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8486775	8486775	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctccctgtgtgactgctcCggcagccctgccttctccaa	4	10	10	17	1	1	1	0	1	1	0	4	1	3	1	5	2	3	3	5	2	1	1	rs368370666		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005415	exon2	c.C51T	p.S17S	CTGCTCCGGCAGC	.	47	21	67	0	.	.	T	8486775	C	T	8486775	2	4	24	1	0	0	0	0	0	0	0	1	9351	639	23	1		1	MARCH2	19	8486775	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	19643	8486775	50642208	802	3906											
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8527458	8527458	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttaatggacgctgaaggaaAgtcaagggtaagtgtctgag	13	9	14	5	1	2	2	1	2	1	0	2	4	2	4	0	3	0	2	0	3	5	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031203	exon3	c.A329C	p.K110T	AAGGAAAGTCAAG	.	65	21	86	0	.	.	C	8527458	A	C	8527458	3	2	24	1	0	0	0	0	1	0	0	0	7312	72	3	4	339	4	HNRNPM	19	8527458	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	40683	8527458	50601525	803	3907											
ZNF699	374879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9407095	9407095	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	atatggcttatctccactgtGaattcttttgtgtttggaga	8	18	9	6	0	2	2	0	1	2	1	3	3	2	2	1	2	0	2	1	2	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198535	exon5	c.C985T	p.H329Y	CACTGTGAATTCT	.	33	17	59	0	.	.	A	9407095	G	A	9407095	3	1	24	1	0	0	0	0	1	0	0	0	18157	1290	45	3	947	3	ZNF699	19	9407095	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	879637	9407095	49721888	804	3908											
ZNF177	7730	broad.mit.edu;bcgsc.ca	37	chr19	9491917	9491917	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcccttaagaaacacatgAgatctcatactggagagaag	15	9	8	9	0	1	3	1	1	1	3	3	6	2	4	1	1	2	0	1	1	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZNF177	NM_001172651	exon6	c.A910C	p.R304R	CACATGAGATCTC	.	30	12	49	1	.	57	C	9491917	A	C	9491917	2	2	24	1	0	0	0	0	0	0	0	1	17804	296	11	4		4	ZNF177	19	9491917	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	84822	9491917	49637066	805	3909											
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10463198	10463198	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	catctgacgcatagtagaacTtatactccttcaggcactct	11	12	6	12	1	3	2	1	1	2	1	4	2	4	2	1	1	2	3	1	1	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003331	exon23	c.A3230C	p.K1077T	TAGAACTTATACT	.	36	14	67	0	.	.	G	10463198	T	G	10463198	3	3	24	1	0	0	0	0	1	0	0	0	16872	1609	56	4	345	4	TYK2	19	10463198	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	971281	10463198	48665785	806	3910											
ZNF69	7620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12014751	12014751	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagaccagaacattgaataTgagtaccaaaaccccaggag	19	5	8	9	0	0	4	0	2	0	2	0	5	0	5	4	1	3	1	4	1	7	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021915	exon3	c.T180C	p.Y60Y	TGAATATGAGTAC	.	105	38	196	0	.	.	C	12014751	T	C	12014751	2	2	24	1	0	0	0	0	0	0	0	1	18151	1471	51	4		4	ZNF69	19	12014751	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1551553	12014751	47114232	807	3911											
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12975632	12975632	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctgcaggcggcgactGtgccaccctgctgaagaata	8	7	13	13	2	0	2	0	1	0	1	0	3	0	2	3	3	3	2	3	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014975	exon13	c.G1376A	p.C459Y	GCGACTGTGCCAC	.	29	10	44	0	.	.	A	12975632	G	A	12975632	3	1	24	1	0	0	0	0	1	0	0	0	9374	1377	48	3	1426	3	MAST1	19	12975632	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	960881	12975632	46153351	808	3912											
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15651396	15651396	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggttccggcaggcctgtgaCatggtgcaccacttcaccac	8	8	11	14	1	1	1	1	1	0	0	2	1	2	1	4	4	1	3	4	4	0	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173483	exon8	c.C807T	p.D269D	CTGTGACATGGTG	.	31	11	28	0	.	.	T	15651396	C	T	15651396	2	4	24	1	0	0	0	0	0	0	0	1	4212	477	17	3		3	CYP4F22	19	15651396	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2675764	15651396	43477587	809	3913											
TMEM38A	79041	hgsc.bcm.edu	37	chr19	16790827	16790827	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccggcgccaccccatcGcgtcctggctgtgcgccatg	3	8	12	18	5	0	0	0	0	0	0	3	0	2	0	6	2	1	1	6	2	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TMEM38A,colon,carcinoma,-1,1	TMEM38A	NM_024074	exon2	c.G157T	p.A53S	CCCATCGCGTCCT	.	21	2	20	0	.	-1	T	16790827	G	T	16790827	3	4	24	1	0	0	0	0	1	0	0	0	16219	1087	38	2	163	2	TMEM38A	19	16790827	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1139431	16790827	42338156	810	3914											
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18648519	18648519	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agcttcagctgcgaggccgcCaggttgttcagacacttcac	8	9	11	13	2	3	1	3	0	0	1	3	2	3	1	2	2	3	4	2	2	0	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012181	exon6	c.G837A	p.L279L	GGCCGCCAGGTTG	.	48	21	67	0	.	.	T	18648519	C	T	18648519	2	4	24	1	0	0	0	0	0	0	0	1	5947	581	21	3		3	FKBP8	19	18648519	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1857692	18648519	40480464	811	3915											
ARMC6	93436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19162649	19162649	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgccctgtcggtgctgacTgatggacagccagacctcct	8	9	11	13	1	0	3	0	2	0	1	2	4	1	4	4	2	3	1	4	2	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199196	exon5	c.T498C	p.T166T	GCTGACTGATGGA	.	18	9	21	0	.	.	C	19162649	T	C	19162649	2	2	24	1	0	0	0	0	0	0	0	1	954	1567	55	4		4	ARMC6	19	19162649	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	514130	19162649	39966334	812	3916											
NDUFA13	51079	hgsc.bcm.edu	37	chr19	19638817	19638818	+	Frame_Shift_Ins	INS	-	-	G																															accccactgtccccacaggtINSgggggagtctgtgttccaca																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015965	exon5	c.317_318insG	p.V106fs	CACAGGTGGGGGA	.	52	12	89	0	.	.	G	19638818	-	G	19638817	7	5	24	1	0	1	1	0	0	0	0	0	10310	1710	59	0	335	0	NDUFA13	19	19638817	Frame_Shift_Ins	INS	-	TCGA-W5-AA39-01A-11D-A417-09	476168	19638817	39490166	813	3917	37	2									
NDUFA13	51079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	19638823	19638823	+	Missense_Mutation	SNP	A	A	G																															actgtccccacaggtgggggAgtctgtgttccacacaaccc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015965	exon5	c.A323G	p.E108G	TGGGGGAGTCTGT	.	53	18	89	0	.	.	G	19638823	A	G	19638823	3	3	24	1	0	0	0	0	1	0	0	0	10310	304	11	4	341	4	NDUFA13	19	19638823	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	6	19638823	39490160	814	3918	37	2									
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	23544197	23544197	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttattaagggttaaggattgTctaaaagctttgccacattc	12	15	8	6	0	1	0	0	0	1	0	2	1	1	1	1	2	2	2	1	2	5	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003430	exon4	c.A1584G	p.R528R	GGATTGTCTAAAA	.	43	21	88	0	.	.	C	23544197	T	C	23544197	2	2	24	1	0	0	0	0	0	0	0	1	18242	1664	58	4		4	ZNF91	19	23544197	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3905374	23544197	35584786	815	3919											
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	23544752	23544752	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagggtttctctccagtatgAattctcttatgtttagcaag	9	17	8	7	0	2	1	0	1	2	0	5	1	3	1	1	1	1	4	1	1	6	7	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003430	exon4	c.T1029G	p.I343M	AGTATGAATTCTC	.	33	14	67	0	.	.	C	23544752	A	C	23544752	3	2	24	1	0	0	0	0	1	0	0	0	18242	242	9	4	2550	4	ZNF91	19	23544752	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	555	23544752	35584231	816	3920											
HAMP	57817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35775743	35775743	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagagctggagccagggccAgctggatggtgagcgcaaca	11	4	16	10	1	0	2	0	1	0	1	0	4	0	4	2	4	5	3	2	4	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021175	exon2	c.A142G	p.S48G	AGGGCCAGCTGGA	.	33	12	37	0	.	.	G	35775743	A	G	35775743	3	3	24	1	0	0	0	0	1	0	0	0	6989	188	7	4	148	4	HAMP	19	35775743	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	12230991	35775743	23353240	817	3921											
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37038201	37038201	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	attctttacatttatagggtTtttcaccagtatgaatcctc	10	18	5	8	0	2	1	1	1	1	0	4	1	3	1	2	1	1	2	2	1	5	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145649	exon6	c.A1259C	p.K420T	TAGGGTTTTTCAC	.	20	9	69	0	.	.	G	37038201	T	G	37038201	3	3	24	1	0	0	0	0	1	0	0	0	18027	1841	64	4	436	4	ZNF529	19	37038201	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1262458	37038201	22090782	818	3922											
ZNF345	25850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	37368144	37368144	+	Silent	SNP	A	A	C																															caaaccttactcaccatcagAgaattcatactggtgagaaa																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242476	exon4	c.A412C	p.R138R	CATCAGAGAATTC	.	35	12	74	0	.	.	C	37368144	A	C	37368144	2	2	24	1	0	0	0	0	0	0	0	1	17916	296	11	4		4	ZNF345	19	37368144	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	329943	37368144	21760839	819	3923	38	2									
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37368149	37368149	+	Missense_Mutation	SNP	T	T	G																															cttactcaccatcagagaatTcatactggtgagaaacccta																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242476	exon4	c.T417G	p.I139M	GAGAATTCATACT	.	37	14	73	0	.	.	G	37368149	T	G	37368149	3	3	24	1	0	0	0	0	1	0	0	0	17916	1771	62	4	419	4	ZNF345	19	37368149	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5	37368149	21760834	820	3924	38	2									
ZNF569	148266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37904939	37904939	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagggcttctctccagtatgAattctcagatgtctgatgag	9	14	10	8	0	3	4	1	3	3	1	6	4	4	4	1	1	0	2	1	1	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152484	exon6	c.T621C	p.I207I	AGTATGAATTCTC	.	61	26	92	0	.	.	G	37904939	A	G	37904939	2	3	24	1	0	0	0	0	0	0	0	1	18057	242	9	4		4	ZNF569	19	37904939	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	536790	37904939	21224044	821	3925											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38689097	38689097	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcggcgcctggaccctGggctgatgcccctgcctgac	3	7	13	18	2	0	2	0	2	0	0	0	3	0	3	6	3	3	1	6	3	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015073	exon19	c.G4909T	p.G1637W	GACCCTGGGCTGA	.	21	12	22	0	.	.	T	38689097	G	T	38689097	3	4	24	1	0	0	0	0	1	0	0	0	14386	1348	47	3	4975	3	SIPA1L3	19	38689097	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	784158	38689097	20439886	822	3926											
FBL	2091	broad.mit.edu	37	chr19	40331279	40331279	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcttcctcctcctccaccGccgccgccgcctccacctcc	2	8	4	27	4	1	0	0	0	1	0	7	0	7	0	13	0	0	0	13	0	0	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FBL	NM_001436	exon2	c.C159T	p.G53G	TCCACCGCCGCCG	.	62	5	82	2	.	37	A	40331279	G	A	40331279	2	1	24	1	0	0	0	0	0	0	0	1	5729	1074	38	1		1	FBL	19	40331279	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1642182	40331279	18797704	823	3927											
C19orf54	284325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	41248653	41248653	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtagccgagactgggcacAgcccgaacacccagcaggac	11	3	13	14	2	0	1	0	0	0	1	0	4	0	2	3	2	4	3	3	2	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198476	exon6	c.T741A	p.A247A	GGGCACAGCCCGA	.	26	15	12	0	.	.	T	41248653	A	T	41248653	2	4	24	1	0	0	0	0	0	0	0	1	1948	175	7	5		5	C19orf54	19	41248653	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	917374	41248653	17880330	824	3928											
CYP2F1	1572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41633960	41633960	+	Silent	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cttggcaatttgccgcggccTttccagctgtgcctgcgccc	3	11	11	16	3	0	0	0	0	0	0	1	0	1	0	5	2	4	2	5	2	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000774	exon10	c.T1449A	p.P483P	GCGGCCTTTCCAG	.	49	23	81	0	.	.	A	41633960	T	A	41633960	2	1	24	1	0	0	0	0	0	0	0	1	4194	1596	56	5		5	CYP2F1	19	41633960	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	385307	41633960	17495023	825	3929											
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42525501	42525501	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gcgcccggggcatgatctccGagccctgctgcatgaagccc	6	6	13	16	3	1	2	0	2	1	0	2	3	1	2	4	2	4	3	4	2	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002088	exon14	c.C1823T	p.S608L	ATCTCCGAGCCCT	.	36	17	63	0	.	.	A	42525501	G	A	42525501	3	1	24	1	0	0	0	0	1	0	0	0	6818	1059	37	1	1143	1	GRIK5	19	42525501	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	891541	42525501	16603482	826	3930											
ZNF526	116115	hgsc.bcm.edu	37	chr19	42729173	42729173	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtgctctaccctctgCgccacccctgaggagttctt	5	11	9	16	1	3	2	0	2	3	0	3	3	3	3	5	1	3	2	5	1	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ZNF526,NS,carcinoma,0,1	ZNF526	NM_133444	exon3	c.C618T	p.C206C	CCTCTGCGCCACC	.	19	2	27	0	.	0	T	42729173	C	T	42729173	2	4	24	1	0	0	0	0	0	0	0	1	18024	776	27	1		1	ZNF526	19	42729173	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	203672	42729173	16399810	827	3931											
CEACAM1	634	bcgsc.ca	37	chr19	43031434	43031434	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	taccagctgtagccaaaaagTtgctggggcagattgtggac	11	9	13	8	0	0	1	0	0	0	1	0	2	0	2	2	3	4	5	2	3	4	4	rs140316654		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CEACAM1	NM_001184816	exon2	c.A183T	p.Q61H	AAAAAGTTGCTGG	.	85	5	121	2	.	43	A	43031434	A	A	43031434	3	1	24	1	0	0	0	0	1	0	0	0	3209	1722	60	5	1526	5	CEACAM1	19	43031434	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	302261	43031434	16097549	828	3932											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43690496	43690496	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggaagttctctcctcacctGtgagcaggagccccttccag	8	9	10	14	0	2	1	1	1	1	0	5	3	4	3	5	2	2	2	5	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002781	exon1	c.C62T	p.T21I	TCACCTGTGAGCA	.	70	26	97	0	.	.	A	43690496	G	A	43690496	3	1	24	1	0	0	0	0	1	0	0	0	12707	1377	48	3	965	3	PSG5	19	43690496	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	659062	43690496	15438487	829	3933											
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45254588	45254588	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccccatggaacaccccCtttctgctgacatcgccatg	7	10	8	16	1	1	1	0	1	1	0	2	2	1	2	5	1	3	1	5	1	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005178	exon2	c.C361T	p.L121F	CACCCCCTTTCTG	.	23	17	32	0	.	.	T	45254588	C	T	45254588	3	4	24	1	0	0	0	0	1	0	0	0	1373	681	24	3	367	3	BCL3	19	45254588	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1564092	45254588	13874395	830	3934											
BLOC1S3	388552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	45683097	45683097	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gacatcgtggctggctgccgCctgctgccggacatccgcgg	4	7	15	15	5	0	0	0	0	0	0	2	2	1	1	4	4	3	3	4	4	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_212550	exon2	c.C543A	p.R181R	CTGCCGCCTGCTG	.	8	6	26	0	.	.	A	45683097	C	A	45683097	2	1	24	1	0	0	0	0	0	0	0	1	1449	726	26	3		3	BLOC1S3	19	45683097	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	428509	45683097	13445886	831	3935											
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45855787	45855787	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcggcaaagaccatgaggcCgtagtccgtcttgcccctga	8	8	12	13	3	1	3	0	2	1	1	3	3	2	3	5	2	1	2	5	2	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ERCC2_ENST00000391945,bladder,carcinoma,0,1	ERCC2_ENST00000391945	NM_000400	exon21	c.G2023T	p.G675C	TGAGGCCGTAGTC	.	43	21	44	0	.	0	A	45855787	C	A	45855787	3	1	24	1	0	0	0	0	1	0	0	0	5241	652	23	2	271	2	ERCC2	19	45855787	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	172690	45855787	13273196	832	3936											
PPP5C	5536	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46891939	46891939	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcaaggccgagggctacgagGtggctcacggaggccgctgt	7	6	17	11	4	2	0	2	0	0	0	2	3	2	1	2	6	1	3	2	6	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PPP5C	NM_006247	exon11	c.G1306A	p.V436M	TACGAGGTGGCTC	.	12	5	24	0	.	44	A	46891939	G	A	46891939	3	1	24	1	0	0	0	0	1	0	0	0	12455	1261	44	3	1348	3	PPP5C	19	46891939	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1036152	46891939	12237044	833	3937											
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	47712448	47712450	+	In_Frame_Del	DEL	CTT	CTT	-																															cgggaccctcctcacaacaaCttcttcttcttcgatggcat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005500	exon9	c.980_982del	p.327_328del	CAACAACTTCTTC	.	37	13	57	0	.	.	-	47712450	CTT	-	47712448	7	5	24	1	0	1	0	1	0	0	0	0	13857	565	20	0	1015	0	SAE1	19	47712448	In_Frame_Del	DEL	CTT	TCGA-W5-AA39-01A-11D-A417-09	820509	47712448	11416535	834	3938											
SPHK2	56848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49132945	49132945	+	Missense_Mutation	SNP	A	A	C																															agtggacggggagcaggtggAgtatgggccgctacaggcac																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPHK2	NM_020126	exon7	c.A1880C	p.E627A	AGGTGGAGTATGG	.	13	5	26	0	.	62	C	49132945	A	C	49132945	3	2	24	1	0	0	0	0	1	0	0	0	15103	304	11	4	1902	4	SPHK2	19	49132945	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1420497	49132945	9996038	835	3939	39	2									
SPHK2	56848	broad.mit.edu;ucsc.edu	37	chr19	49132949	49132949	+	Nonsense_Mutation	SNP	T	T	A																															gacggggagcaggtggagtaTgggccgctacaggcacagat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPHK2	NM_020126	exon7	c.T1884A	p.Y628X	GGAGTATGGGCCG	.	13	5	25	0	.	62	A	49132949	T	A	49132949	4	1	24	1	0	0	0	0	0	1	0	0	15103	1471	51	5	1906	5	SPHK2	19	49132949	Nonsense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4	49132949	9996034	836	3940	39	2									
HSD17B14	51171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49339067	49339067	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gggaccgtcactcaccatccTtgtcgcagataaccactcgg	9	8	9	15	3	2	1	2	0	0	1	5	2	3	2	4	2	1	1	4	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016246	exon2	c.A122C	p.K41T	CCATCCTTGTCGC	.	22	9	36	0	.	.	G	49339067	T	G	49339067	3	3	24	1	0	0	0	0	1	0	0	0	7424	1609	56	4	722	4	HSD17B14	19	49339067	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	206118	49339067	9789916	837	3941											
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50314691	50314691	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtccccgatgagctccgagtCccccaggaagctgtcgatga	8	7	12	14	3	0	2	0	2	0	0	4	6	3	3	5	1	2	2	5	1	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025129	exon5	c.G421T	p.D141Y	CCGAGTCCCCCAG	.	26	13	52	0	.	.	A	50314691	C	A	50314691	3	1	24	1	0	0	0	0	1	0	0	0	6147	855	30	3	863	3	FUZ	19	50314691	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	975624	50314691	8814292	838	3942											
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50436094	50436094	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	cctcaaccttctcgcctggcCccctacccacatcctgccac	6	8	4	23	1	2	0	1	0	1	0	4	0	3	0	8	1	3	0	8	1	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012068	exon4	c.C594T	p.A198A	CCTGGCCCCCTAC	.	35	24	60	0	.	.	T	50436094	C	T	50436094	2	4	24	1	0	0	0	0	0	0	0	1	1082	610	22	3		3	ATF5	19	50436094	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	121403	50436094	8692889	839	3943											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54672203	54672203	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagcaagttgaagagctgggTggcaaaggtgaccaggccct	11	6	16	8	0	0	3	0	2	0	1	0	4	0	3	2	4	2	4	2	4	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145303	exon4	c.A664T	p.T222S	GCTGGGTGGCAAA	.	39	13	68	0	.	.	A	54672203	T	A	54672203	3	1	24	1	0	0	0	0	1	0	0	0	16047	1696	59	5	1522	5	TMC4	19	54672203	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4236109	54672203	4456780	840	3944											
NLRP8	126205	hgsc.bcm.edu;bcgsc.ca	37	chr19	56467321	56467321	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaatgattatcataaagttGtcttgagaattggcaacaac	16	13	7	5	0	2	2	1	2	1	1	2	3	2	2	0	1	2	2	0	1	8	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_176811	exon3	c.G1897T	p.V633F	AAAGTTGTCTTGA	.	54	4	94	0	.	.	T	56467321	G	T	56467321	3	4	24	1	0	0	0	0	1	0	0	0	10530	1377	48	3	1907	3	NLRP8	19	56467321	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1795118	56467321	2661662	841	3945											
NLRP5	126206	hgsc.bcm.edu	37	chr19	56527149	56527149	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aagatagtgccacagctgcaGagacaaaagaacaaggtgaa	19	4	11	7	0	0	4	0	1	0	3	0	5	0	4	1	1	4	2	1	1	7	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NLRP5_ENST00000390649,colon,carcinoma,0,1	NLRP5_ENST00000390649	NM_153447	exon4	c.G550A	p.E184K	GCTGCAGAGACAA	.	41	2	49	0	.	0	A	56527149	G	A	56527149	3	1	24	1	0	0	0	0	1	0	0	0	10527	943	33	3	564	3	NLRP5	19	56527149	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	59828	56527149	2601834	842	3946											
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56935139	56935139	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggatacctaattgtacatcAgagaattcatactggagaga	15	11	9	6	0	2	2	2	0	0	2	2	6	2	4	1	2	3	1	1	2	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159861	exon5	c.A1112G	p.Q371R	TACATCAGAGAAT	.	33	11	67	0	.	.	G	56935139	A	G	56935139	3	3	24	1	0	0	0	0	1	0	0	0	18072	188	7	4	1126	4	ZNF583	19	56935139	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	407990	56935139	2193844	843	3947											
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58132575	58132575	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctgactatattgcacaccAgagggttcacactggtgaaa	12	11	9	9	0	2	3	1	2	1	1	2	3	2	3	1	2	1	2	1	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003435	exon3	c.A1088T	p.Q363L	CACACCAGAGGGT	.	40	20	75	0	.	.	T	58132575	A	T	58132575	3	4	24	1	0	0	0	0	1	0	0	0	17782	188	7	5	1094	5	ZNF134	19	58132575	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1197436	58132575	996408	844	3948											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58491019	58491019	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tattctttgtaattatactgGttttctccaacatgaagcct	10	18	5	8	0	2	1	0	1	2	0	3	1	2	1	2	1	3	2	2	1	6	8	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025027	exon7	c.C1029A	p.N343K	ATACTGGTTTTCT	.	46	16	101	0	.	.	T	58491019	G	T	58491019	3	4	24	1	0	0	0	0	1	0	0	0	18089	1252	44	3	1353	3	ZNF606	19	58491019	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	358444	58491019	637964	845	3949											
ZNF274	10782	hgsc.bcm.edu	37	chr19	58718365	58718365	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgacaggtccccgggagcccTggaccagctccgagagctgt	7	6	14	14	2	0	2	0	1	0	1	2	5	2	4	5	3	3	2	5	3	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ZNF274,NS,carcinoma,0,1	ZNF274	.	p.L178P	.	.	GAGCCCTGGACCA	.	53	4	103	1	.	0	C	58718365	T	C	58718365	3	2	24	1	0	0	0	0	1	0	0	0	17867	1580	55	4	549	4	ZNF274	19	58718365	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	227346	58718365	410618	846	3950											
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59009967	59009967	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gggcccggttgtccagtacaAacagagggtcaaccacgatc	11	6	12	12	2	1	1	1	0	0	1	3	2	2	1	3	3	3	2	3	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012254	exon10	c.T1988A	p.F663Y	AGTACAAACAGAG	.	25	10	37	0	.	.	T	59009967	A	T	59009967	3	4	24	1	0	0	0	0	1	0	0	0	14584	14	1	5	88	5	SLC27A5	19	59009967	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	291602	59009967	119016	847	3951											
ADAM33	80332	broad.mit.edu	37	chr20	3654549	3654549	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgccacctgaatgtccagagTcctgagaagctgagggcgag	10	6	14	11	2	0	4	0	3	0	2	2	6	2	4	4	1	1	1	4	1	2	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADAM33	NM_025220	exon9	c.A748G	p.T250A	CCAGAGTCCTGAG	.	11	7	17	0	.	76	C	3654549	T	C	3654549	3	2	24	1	0	0	0	0	1	0	0	0	249	1667	58	4	1749	4	ADAM33	20	3654549	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09		3654549	59370971	848	3952											
HSPA12B	116835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3730721	3730721	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caaaaggcaacggccggcagCctgggtagatctgaccatcg	11	5	13	12	3	1	2	0	1	1	1	2	2	1	2	3	4	2	3	3	4	4	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052970	exon11	c.C1148A	p.A383D	CGGCAGCCTGGGT	.	18	5	47	0	.	.	A	3730721	C	A	3730721	3	1	24	1	0	0	0	0	1	0	0	0	7448	739	26	3	1186	3	HSPA12B	20	3730721	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	76172	3730721	59294799	849	3953											
SLC23A2	9962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	4839936	4839936	+	Splice_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgatatataccacgtaccTgggatggtgttatccaggat	10	14	10	7	1	0	1	0	1	0	0	1	3	1	3	3	3	2	2	3	3	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SLC23A2	NM_203327	exon16	c.A1719C	p.P573P	CGTACCTGGGATG	.	78	31	133	0	.	62	G	4839936	T	G	4839936	5	3	24	1	0	0	0	0	0	0	1	0	14518	1594	55	4	241	4	SLC23A2	20	4839936	Splice_Site	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	1109215	4839936	58185584	850	3954											
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	16025251	16025251	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	aggttgacaaggtaaatgacCcaacagagagtcaacaagaa	19	5	10	7	0	1	4	1	2	0	2	1	5	1	4	1	2	2	2	1	2	7	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033087	exon13	c.C562A	p.P188T	AATGACCCAACAG	.	61	19	105	0	.	.	A	16025251	C	A	16025251	3	1	24	1	0	0	0	0	1	0	0	0	9192	623	22	3	1333	3	MACROD2	20	16025251	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	11185315	16025251	47000269	851	3955											
BFSP1	631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	17475396	17475396	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttcctgtatagtttcccaaAgcctttgcttatctgccctc	6	16	5	14	0	1	0	0	0	1	0	4	0	3	0	4	0	3	3	4	0	4	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001195	exon8	c.T1321G	p.F441V	TCCCAAAGCCTTT	.	27	15	27	0	.	.	C	17475396	A	C	17475396	3	2	24	1	0	0	0	0	1	0	0	0	1414	72	3	4	680	4	BFSP1	20	17475396	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1450145	17475396	45550124	852	3956											
SNX5	27131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	17928287	17928287	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgcgtctgtataagagAtcctgggaaaaaaattaaca	15	11	10	5	1	1	1	0	0	1	1	2	3	2	2	1	2	2	1	1	2	6	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014426	exon11	c.T921G	p.D307E	TAAGAGATCCTGG	.	40	20	99	0	.	.	C	17928287	A	C	17928287	3	2	24	1	0	0	0	0	1	0	0	0	14959	330	12	4	305	4	SNX5	20	17928287	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	452891	17928287	45097233	853	3957											
SNX5	27131	hgsc.bcm.edu	37	chr20	17936035	17936035	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cccagcatagtctgttgtttCaataagagtgtcatgtagcc	10	13	9	9	0	3	1	2	0	1	1	3	1	3	1	2	0	2	4	2	0	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014426	exon3	c.G241A	p.E81K	TTGTTTCAATAAG	.	40	4	38	0	.	.	T	17936035	C	T	17936035	3	4	24	1	0	0	0	0	1	0	0	0	14959	835	29	3	1017	3	SNX5	20	17936035	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7748	17936035	45089485	854	3958											
FOXA2	3170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	22563329	22563329	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctcgctcagcgtcagcatcTtgttggggctctgctggatg	4	13	13	11	2	5	0	2	0	3	0	6	1	5	1	0	3	3	5	0	3	0	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021784	exon2	c.A551C	p.K184T	AGCATCTTGTTGG	.	54	21	50	0	.	.	G	22563329	T	G	22563329	3	3	24	1	0	0	0	0	1	0	0	0	6023	1609	56	4	844	4	FOXA2	20	22563329	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4627294	22563329	40462191	855	3959											
GZF1	64412	ucsc.edu	37	chr20	23345235	23345235	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	taatgagaagagtgtggatgGtactaggactaatgtctact	13	12	12	4	0	1	2	0	1	1	2	1	5	1	4	0	3	2	1	0	3	6	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GZF1	NM_022482	exon1	c.G215T	p.G72V	TGGATGGTACTAG	.	51	5	93	0	.	61	T	23345235	G	T	23345235	3	4	24	1	0	0	0	0	1	0	0	0	6955	1261	44	3	217	3	GZF1	20	23345235	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	781906	23345235	39680285	856	3960											
GZF1	64412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23345474	23345474	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtctcaggaggtggaggtgAgcagtggctcccaagttagt	9	9	16	7	0	1	1	1	1	1	0	3	3	2	3	1	5	1	3	1	5	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022482	exon1	c.A454G	p.S152G	GAGGTGAGCAGTG	.	17	5	39	0	.	.	G	23345474	A	G	23345474	3	3	24	1	0	0	0	0	1	0	0	0	6955	304	11	4	456	4	GZF1	20	23345474	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	239	23345474	39680046	857	3961											
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30486300	30486300	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cagagagcatcgatccggttCaagaccaccctcatgaacac	13	6	8	14	2	2	3	2	1	0	2	4	5	3	3	3	1	2	2	3	1	2	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008409	exon4	c.C138G	p.F46L	CCGGTTCAAGACC	.	33	17	26	0	.	.	G	30486300	C	G	30486300	3	3	24	1	0	0	0	0	1	0	0	0	16796	825	29	5	148	5	TTLL9	20	30486300	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	7140826	30486300	32539220	858	3962											
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32295759	32295759	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggcaaacaggacgcgtgacAacaggtacatgttgatctgc	12	7	13	9	2	1	2	0	2	1	0	1	3	1	3	0	3	4	3	0	3	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007238	exon4	c.T392C	p.L131S	CGTGACAACAGGT	.	36	16	39	0	.	.	G	32295759	A	G	32295759	3	3	24	1	0	0	0	0	1	0	0	0	12903	131	5	4	250	4	PXMP4	20	32295759	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1809459	32295759	30729761	859	3963											
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33722567	33722567	+	Missense_Mutation	SNP	A	A	G																															gatatctgaccggctctcccAgaggcgcatcaaagccactc																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018217	exon6	c.T676C	p.W226R	TCTCCCAGAGGCG	.	29	13	28	0	.	.	G	33722567	A	G	33722567	3	3	24	1	0	0	0	0	1	0	0	0	4938	188	7	4	1084	4	EDEM2	20	33722567	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1426808	33722567	29302953	860	3964	40	2									
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33722569	33722569	+	Missense_Mutation	SNP	A	A	G																															tatctgaccggctctcccagAggcgcatcaaagccactctg																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018217	exon6	c.T674C	p.L225P	TCCCAGAGGCGCA	.	28	12	28	0	.	.	G	33722569	A	G	33722569	3	3	24	1	0	0	0	0	1	0	0	0	4938	304	11	4	1086	4	EDEM2	20	33722569	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2	33722569	29302951	861	3965	40	2									
SPAG4	6676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34205495	34205495	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccctggcaggagacgtgctgGtcagcatgtacaggtcagag	9	7	15	10	1	2	2	2	0	0	2	2	3	2	2	1	4	3	4	1	4	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003116	exon3	c.G463T	p.V155F	GTGCTGGTCAGCA	.	22	10	48	0	.	.	T	34205495	G	T	34205495	3	4	24	1	0	0	0	0	1	0	0	0	15036	1261	44	3	473	3	SPAG4	20	34205495	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	482926	34205495	28820025	862	3966											
ROMO1	140823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34287659	34287659	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcatggcggccggggcGctcttcggcaccttttcctg	2	10	16	13	4	1	0	0	0	1	0	3	0	2	0	3	6	0	3	3	6	0	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080748	exon2	c.G105A	p.A35A	CGGGGCGCTCTTC	.	58	25	83	0	.	.	A	34287659	G	A	34287659	2	1	24	1	0	0	0	0	0	0	0	1	13574	1074	38	1		1	ROMO1	20	34287659	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	82164	34287659	28737861	863	3967											
RPRD1B	58490	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	36694651	36694651	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttgtcggagaaggagaaaaAactagaggtgagtgcattga	15	9	14	3	1	0	5	0	2	0	3	1	7	0	5	0	3	2	1	0	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021215	exon6	c.A824C	p.K275T	AGAAAAAACTAGA	.	30	10	48	0	.	.	C	36694651	A	C	36694651	3	2	24	1	0	0	0	0	1	0	0	0	13668	14	1	4	846	4	RPRD1B	20	36694651	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2406992	36694651	26330869	864	3968											
RALGAPB	57148	broad.mit.edu	37	chr20	37117260	37117260	+	Splice_Site	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgttaaaaactgacaaagAagtaagtgtttctaaatttc	16	15	6	4	0	1	2	0	1	1	1	2	2	1	2	0	0	1	3	0	0	8	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RALGAPB	NM_020336	exon2	c.A185C	p.E62A	ACAAAGAAGTAAG	.	17	4	46	0	.	134	C	37117260	A	C	37117260	5	2	24	1	0	0	0	0	0	0	1	0	13067	260	9	4	187	4	RALGAPB	20	37117260	Splice_Site	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	422609	37117260	25908260	865	3969											
SYS1	90196	hgsc.bcm.edu;ucsc.edu	37	chr20	43996521	43996521	+	RNA	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcttctaggaatgaccaGgcacccagctcccactggac	9	8	9	15	0	2	1	0	1	2	0	3	3	3	3	3	3	1	2	3	3	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGACCAGGCACCC	.	15	10	36	0	.	.	A	43996521	G	A	43996521	1	1	24	0	1	0	0	0	0	0	0	0	15521	1015	35	3		3	SYS1	20	43996521	RNA	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	6879261	43996521	19028999	866	3970											
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44506452	44506452	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgctggactgcatcctctgcTttgtggattacatagacttc	7	15	9	10	0	1	1	0	0	1	1	3	3	2	3	1	2	4	3	1	2	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080752	exon2	c.T1255G	p.F419V	CTCTGCTTTGTGG	.	26	10	47	0	.	.	G	44506452	T	G	44506452	3	3	24	1	0	0	0	0	1	0	0	0	18282	1609	56	4	1261	4	ZSWIM3	20	44506452	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	509931	44506452	18519068	867	3971											
MMP9	4318	broad.mit.edu;bcgsc.ca	37	chr20	44643002	44643008	+	Splice_Site	DEL	GCCCGCA	GCCCGCA	-																															cacctgtctcctccgcgcctGcccgcaggttcgacgtgaag																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MMP9	.	.	.	.	GCGCCTGCCCGCA	.	28	7	43	0	.	84	-	44643008	GCCCGCA	-	44643002	8	5	24	1	0	1	0	1	0	0	1	0	9718	1334	46	0		0	MMP9	20	44643002	Splice_Site	DEL	GCCCGCA	TCGA-W5-AA39-01A-11D-A417-09	136550	44643002	18382518	868	3972											
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57611616	57611616	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acggtaattatggcttcttgTgtcaaaacagttctggaaca	12	13	9	7	1	3	0	1	0	2	0	3	1	3	1	0	3	2	3	0	3	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	SLMO2,NS,carcinoma,0,1	SLMO2	NM_016045	exon5	c.A375G	p.T125T	TTCTTGTGTCAAA	.	44	23	75	0	.	0	C	57611616	T	C	57611616	2	2	24	1	0	0	0	0	0	0	0	1	14805	1683	59	4		4	SLMO2	20	57611616	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	12968614	57611616	5413904	869	3973											
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	58470491	58470491	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atactttcaaggtaaagttaCtttgtctatattatctcttc	11	19	4	7	0	3	0	1	0	2	0	5	0	3	0	0	1	2	2	0	1	8	9	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014258	exon20	c.1665+1G>A	.	AAGTTACTTTGTC	.	41	15	51	0	.	.	T	58470491	C	T	58470491	5	4	24	1	0	0	0	0	0	0	1	0	15489	579	20	3	3030	3	SYCP2	20	58470491	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	858875	58470491	4555029	870	3974											
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61926534	61926534	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gccaccctgggaagagagcaAgttcaaggtaaggacactgg	13	5	14	9	0	1	1	1	0	0	1	1	4	1	3	2	4	1	3	2	4	4	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020882	exon2	c.A75C	p.Q25H	AGAGCAAGTTCAA	.	68	23	96	0	.	.	C	61926534	A	C	61926534	3	2	24	1	0	0	0	0	1	0	0	0	3702	69	3	4	77	4	COL20A1	20	61926534	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	3456043	61926534	1098986	871	3975											
BAGE2	85319	broad.mit.edu	37	chr21	11043037	11043039	+	RNA	DEL	TGC	TGC	-																															gttgttgttgttgctgttgtTgctgttgttgttgctgtttt																								rs149525628	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGTTGTTGCTGTT	.	6	2	5	0	.	.	-	11043039	TGC	-	11043037	6	5	24	0	1	1	0	1	0	0	0	0	1290	1827	63	0		0	BAGE2	21	11043037	RNA	DEL	TGC	TCGA-W5-AA39-01A-11D-A417-09		11043037	37086858	872	3976											
BTG3	10950	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	18966436	18966436	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gaggtgctaacatgtgaggaTtaatccagtgattccggtca	11	11	12	7	1	1	2	1	2	0	0	3	4	3	3	2	3	2	1	2	3	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BTG3	NM_001130914	exon6	c.A866C	p.N289T	TGAGGATTAATCC	.	36	23	91	0	.	27	G	18966436	T	G	18966436	3	3	24	1	0	0	0	0	1	0	0	0	1558	1493	52	4	28	4	BTG3	21	18966436	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7923399	18966436	29163459	873	3977											
ADAMTS5	11096	hgsc.bcm.edu	37	chr21	28296852	28296852	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagggctaaataggcagtGaatctagtctggtctttggc	9	13	12	7	0	4	1	1	1	3	0	4	1	4	1	0	4	0	2	0	4	5	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ADAMTS5,NS,carcinoma,0,1	ADAMTS5	NM_007038	exon8	c.C2313A	p.F771L	GGCAGTGAATCTA	.	21	2	97	0	.	0	T	28296852	G	T	28296852	3	4	24	1	0	0	0	0	1	0	0	0	268	1281	45	3	483	3	ADAMTS5	21	28296852	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	9330416	28296852	19833043	874	3978											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	40665822	40665822	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accacactctaataattttaTcacagctccccgcagcaatc	13	10	3	15	1	2	0	1	0	1	0	4	0	3	0	3	0	2	3	3	0	4	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018963	exon8	c.A746G	p.D249G	ATTTTATCACAGC	.	18	16	71	0	.	.	C	40665822	T	C	40665822	3	2	24	1	0	0	0	0	1	0	0	0	1527	1435	50	4	6595	4	BRWD1	21	40665822	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	12368970	40665822	7464073	875	3979											
C2CD2	25966	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr21	43327893	43327893	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgtcgccgtcgccagcagaCctgaaaagataggagacagg	12	5	13	11	3	0	4	0	1	0	3	2	5	0	4	3	2	1	1	3	2	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015500	exon9	c.G1019A	p.G340D	AGCAGACCTGAAA	.	27	4	80	0	.	.	T	43327893	C	T	43327893	3	4	24	1	0	0	0	0	1	0	0	0	2166	521	18	3	1095	3	C2CD2	21	43327893	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2662071	43327893	4802002	876	3980											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	44845977	44845977	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	gcccagggtccgctcgatgtCgtaaaaacccacccggaggg	9	5	13	14	4	0	0	0	0	0	0	3	2	1	1	4	3	1	2	4	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173354	exon2	c.G82C	p.D28H	CGATGTCGTAAAA	.	44	31	82	0	.	.	G	44845977	C	G	44845977	3	3	24	1	0	0	0	0	1	0	0	0	14372	884	31	5	2321	5	SIK1	21	44845977	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1518084	44845977	3283918	877	3981											
PFKL	5211	broad.mit.edu;bcgsc.ca	37	chr21	45746699	45746699	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctacgtgtcaggggagcTggagcacgtgacccgccgca	7	5	15	14	5	1	1	1	1	0	0	1	3	1	3	3	3	3	3	3	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PFKL	NM_002626	exon22	c.T2297G	p.L766R	GGGAGCTGGAGCA	.	23	17	94	3	.	65	G	45746699	T	G	45746699	3	3	24	1	0	0	0	0	1	0	0	0	11812	1580	55	4	2383	4	PFKL	21	45746699	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	900722	45746699	2383196	878	3982											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18379580	18379580	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttctcggaggcatacatacaAgtgaagtcaaacatggccac	14	8	9	10	1	2	1	1	1	1	0	3	2	2	2	1	3	3	1	1	3	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015241	exon8	c.T1116G	p.T372T	CATACAAGTGAAG	.	11	5	26	0	.	.	C	18379580	A	C	18379580	2	2	24	1	0	0	0	0	0	0	0	1	9619	59	3	4		4	MICAL3	22	18379580	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09		18379580	32924986	879	3983											
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19344493	19344493	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	gtagagatcggggatggcagGaggatgggagagaggagacg	12	4	22	3	2	0	3	0	0	0	3	1	10	0	7	0	7	0	2	0	7	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003325	exon19	c.C2316T	p.L772L	TGGCAGGAGGATG	.	12	8	20	0	.	.	A	19344493	G	A	19344493	2	1	24	1	0	0	0	0	0	0	0	1	7161	1161	41	3		3	HIRA	22	19344493	Silent	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	964913	19344493	31960073	880	3984											
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19373053	19373053	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agggctctcaccttcctgatAtcttcaagactctccccgtt	7	13	6	15	1	4	2	2	1	3	1	7	2	5	2	4	1	0	2	4	1	2	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003325	exon12	c.T1320C	p.D440D	CCTGATATCTTCA	.	20	10	26	0	.	.	G	19373053	A	G	19373053	2	3	24	1	0	0	0	0	0	0	0	1	7161	446	16	4		4	HIRA	22	19373053	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	28560	19373053	31931513	881	3985											
RIMBP3	85376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	20458094	20458094	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gacggtggaggacatagttcCccaatacacctgcagcaagt	12	7	11	11	1	0	0	0	0	0	0	1	3	1	2	3	3	3	3	3	3	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015672	exon1	c.G3208C	p.G1070R	TAGTTCCCCAATA	.	177	31	283	0	.	.	G	20458094	C	G	20458094	3	3	24	1	0	0	0	0	1	0	0	0	13414	632	22	5	1715	5	RIMBP3	22	20458094	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1085041	20458094	30846472	882	3986											
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	20760929	20760929	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtgcagcgagtgcggcagaGccttcagccagaaccactgt	10	6	13	12	2	1	2	1	0	0	2	1	3	1	2	3	1	6	2	3	1	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003426	exon5	c.G1606A	p.A536T	GGCAGAGCCTTCA	.	32	16	74	0	.	.	A	20760929	G	A	20760929	3	1	24	1	0	0	0	0	1	0	0	0	18177	971	34	3	1624	3	ZNF74	22	20760929	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	302835	20760929	30543637	883	3987											
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21333952	21333952	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cgacgacgtcatcatccaggGggatctggaggagctgaagt	10	7	15	9	3	3	1	2	1	1	0	4	6	4	4	1	4	1	1	1	4	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146288	exon18	c.G1631T	p.G544V	TCCAGGGGGATCT	.	46	21	69	0	.	.	T	21333952	G	T	21333952	3	4	24	1	0	0	0	0	1	0	0	0	425	1232	43	3	1697	3	AIFM3	22	21333952	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	573023	21333952	29970614	884	3988											
YDJC	150223	hgsc.bcm.edu;bcgsc.ca	37	chr22	21982727	21982727	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtagggagggttccaGgaagggttccagagtgggct	9	8	18	6	0	1	2	1	0	0	2	3	4	3	4	2	5	0	4	2	5	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001017964	exon5	c.C952A	p.L318M	GTTCCAGGAAGGG	.	48	4	59	0	.	.	T	21982727	G	T	21982727	3	4	24	1	0	0	0	0	1	0	0	0	17531	991	35	3	23	3	YDJC	22	21982727	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	648775	21982727	29321839	885	3989											
TOP3B	8940	broad.mit.edu	37	chr22	22318376	22318376	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcctttccgcgggcggttgaTaccttctgctaacaaccgct	6	11	10	14	4	1	1	0	1	1	0	2	1	2	1	4	2	4	3	4	2	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TOP3B	NM_003935	exon11	c.A1123C	p.I375L	GGTTGATACCTTC	.	10	3	15	0	.	107	G	22318376	T	G	22318376	3	3	24	1	0	0	0	0	1	0	0	0	16429	1406	49	4	1497	4	TOP3B	22	22318376	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	335649	22318376	28986190	886	3990											
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29130501	29130501	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggaatagaatagagtTcctgagtggacactgtctct	11	11	10	9	0	2	3	1	1	1	2	4	5	3	5	2	2	0	1	2	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145862	exon2	c.A209G	p.E70G	TAGAGTTCCTGAG	.	17	12	52	0	.	.	C	29130501	T	C	29130501	3	2	24	1	0	0	0	0	1	0	0	0	3357	1783	62	4	1611	4	CHEK2	22	29130501	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	6812125	29130501	22174065	887	3991											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29440787	29440787	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaacccactgaatactttgAcatggggattttcctggctt	9	13	9	10	0	0	2	0	2	0	0	1	3	1	3	2	3	2	2	2	3	3	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001206998	exon5	c.A653G	p.D218G	ACTTTGACATGGG	.	20	14	75	0	.	.	G	29440787	A	G	29440787	3	3	24	1	0	0	0	0	1	0	0	0	18255	275	10	4	367	4	ZNRF3	22	29440787	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	310286	29440787	21863779	888	3992											
ASCC2	84164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30186459	30186459	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagccccttgaatgctcaccCtttcttggcgagaaaggcca	9	9	9	14	1	2	2	1	1	1	1	2	3	2	2	4	2	2	1	4	2	2	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032204	exon19	c.G2101T	p.G701W	CTCACCCTTTCTT	.	17	10	42	0	.	.	A	30186459	C	A	30186459	3	1	24	1	0	0	0	0	1	0	0	0	1031	695	24	3	180	3	ASCC2	22	30186459	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	745672	30186459	21118107	889	3993											
ISX	91464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	35481519	35481519	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gttgtccatcggctcaagatCagctggcctctgcctggttc	5	12	11	13	1	3	1	2	0	1	1	6	1	4	1	3	3	2	4	3	3	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008494	exon4	c.C571T	p.Q191X	CAAGATCAGCTGG	.	29	15	30	0	.	.	T	35481519	C	T	35481519	4	4	24	1	0	0	0	0	0	1	0	0	7909	827	29	3	585	3	ISX	22	35481519	Nonsense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	5295060	35481519	15823047	890	3994											
APOL2	23780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36624205	36624205	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctcaagctcccttttcaaccGaggaaactctttcaaaaacc	13	10	4	14	1	4	0	3	0	1	0	5	2	5	1	3	1	4	1	3	1	5	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030882	exon5	c.C259T	p.R87W	TCAACCGAGGAAA	.	30	12	43	0	.	.	A	36624205	G	A	36624205	3	1	24	1	0	0	0	0	1	0	0	0	803	1057	37	1	758	1	APOL2	22	36624205	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	1142686	36624205	14680361	891	3995											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36717867	36717867	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgcgaatgaatttgccCtaagtaagaaaggatagcaa	16	10	10	5	1	0	3	0	2	0	1	0	5	0	4	1	1	3	2	1	1	7	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002473	exon8	c.706-1G>T	.	TTTGCCCTAAGTA	.	37	14	69	0	.	.	A	36717867	C	A	36717867	5	1	24	1	0	0	0	0	0	0	1	0	10090	695	24	3	5317	3	MYH9	22	36717867	Splice_Site	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	93662	36717867	14586699	892	3996											
CDC42EP1	11135	broad.mit.edu	37	chr22	37964736	37964736	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaagagtggagggcgccccAggcaggcagcaggaccccag	10	1	17	13	2	0	1	0	0	0	1	0	4	0	3	4	5	1	3	4	5	1	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CDC42EP1	NM_152243	exon3	c.A1085G	p.Q362R	CGCCCCAGGCAGG	.	8	3	14	0	.	53	G	37964736	A	G	37964736	3	3	24	1	0	0	0	0	1	0	0	0	3097	188	7	4	1091	4	CDC42EP1	22	37964736	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1246869	37964736	13339830	893	3997											
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39917554	39917554	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaaagcctaggtctcttagAtgattacctggaggtggcca	11	10	12	8	0	1	3	0	1	1	2	2	4	1	4	3	4	2	0	3	4	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001675	exon1	c.A104C	p.D35A	TCTTAGATGATTA	.	35	10	65	0	.	.	C	39917554	A	C	39917554	3	2	24	1	0	0	0	0	1	0	0	0	1081	333	12	4	106	4	ATF4	22	39917554	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	1952818	39917554	11387012	894	3998											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	40059833	40059833	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggagcggcctcagatcgAggccggcagcaccgtgagtg	7	5	16	13	4	1	2	1	1	0	1	2	4	1	3	4	4	2	2	4	4	0	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021096	exon19	c.A3584C	p.E1195A	AGATCGAGGCCGG	.	15	6	17	0	.	.	C	40059833	A	C	40059833	3	2	24	1	0	0	0	0	1	0	0	0	2564	304	11	4	3658	4	CACNA1I	22	40059833	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	142279	40059833	11244733	895	3999											
EP300	2033	broad.mit.edu	37	chr22	41513219	41513219	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctctatttgacttggagcaCgacttaccagatgaattaat	12	14	7	8	1	1	3	0	2	1	1	2	5	1	4	1	1	2	1	1	1	4	5	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	EP300	NM_001429	exon2	c.C123G	p.H41Q	GGAGCACGACTTA	.	35	12	52	0	.	367	G	41513219	C	G	41513219	3	3	24	1	0	0	0	0	1	0	0	0	5176	535	19	5	129	5	EP300	22	41513219	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	1453386	41513219	9791347	896	4000											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41574848	41574848	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatgctttctcagcttgctaGcaatccaggcatggcaaacc	11	10	8	12	0	1	0	1	0	1	0	3	0	2	0	2	2	5	6	2	2	4	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001429	exon31	c.G7133A	p.S2378N	TTGCTAGCAATCC	.	38	14	62	0	.	.	A	41574848	G	A	41574848	3	1	24	1	0	0	0	0	1	0	0	0	5176	971	34	3	7255	3	EP300	22	41574848	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	61629	41574848	9729718	897	4001											
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	45681856	45681856	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccccaactggccagtgtgacTttcgccaccaacaaccccac	10	6	6	19	1	0	1	0	1	0	0	1	1	0	1	7	1	3	0	7	1	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006953	exon2	c.T87G	p.T29T	TGTGACTTTCGCC	.	21	5	37	0	.	.	G	45681856	T	G	45681856	2	3	24	1	0	0	0	0	0	0	0	1	17070	1596	56	4		4	UPK3A	22	45681856	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	4107008	45681856	5622710	898	4002											
ATXN10	25814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	46125305	46125305	+	Silent	SNP	A	A	G																															aaatcctttatgttttacagAgttacactgttagaccttat																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013236	exon7	c.A729G	p.R243R	TTACAGAGTTACA	.	15	7	40	0	.	.	G	46125305	A	G	46125305	2	3	24	1	0	0	0	0	0	0	0	1	1208	318	11	4		4	ATXN10	22	46125305	Silent	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	443449	46125305	5179261	899	4003	41	2									
ATXN10	25814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	46125307	46125307	+	Missense_Mutation	SNP	T	T	G																															atcctttatgttttacagagTtacactgttagaccttatga																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013236	exon7	c.T731G	p.V244G	ACAGAGTTACACT	.	15	7	39	0	.	.	G	46125307	T	G	46125307	3	3	24	1	0	0	0	0	1	0	0	0	1208	1725	60	4	757	4	ATXN10	22	46125307	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	2	46125307	5179259	900	4004	41	2									
ZBED4	9889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50278233	50278233	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaagctgtctgcattcActgcatgaacgagttcagcc	10	10	8	13	1	3	1	2	1	1	0	4	2	4	1	2	0	5	4	2	0	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014838	exon2	c.A923T	p.H308L	GCATTCACTGCAT	.	17	7	27	0	.	.	T	50278233	A	T	50278233	3	4	24	1	0	0	0	0	1	0	0	0	17579	159	6	5	925	5	ZBED4	22	50278233	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	4152926	50278233	1026333	901	4005											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50720113	50720113	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcttcatggtgcagcgcTcggcacccacgaaggcctcg	6	7	13	15	5	2	0	1	0	1	0	4	1	2	0	2	3	2	3	2	3	1	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012401	exon21	c.A3404T	p.E1135V	CAGCGCTCGGCAC	.	24	12	34	0	.	.	A	50720113	T	A	50720113	3	1	24	1	0	0	0	0	1	0	0	0	12172	1551	54	5	2180	5	PLXNB2	22	50720113	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	441880	50720113	584453	902	4006											
TYMP	1890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50967621	50967621	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggctgaccttgtcacccaCaccccctgtggaatgcttgt	7	10	9	15	0	1	1	1	1	0	0	1	2	1	2	4	2	1	2	4	2	1	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257989	exon3	c.G361A	p.V121M	CACCCACACCCCC	.	46	21	62	0	.	.	T	50967621	C	T	50967621	3	4	24	1	0	0	0	0	1	0	0	0	16873	478	17	3	1119	3	TYMP	22	50967621	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	247508	50967621	336945	903	4007											
ARSD	414	broad.mit.edu	37	chrX	2836254	2836254	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gcgggatgcacaattcacacCctggtgccattttcctaaaa	11	10	8	12	1	1	0	1	0	0	0	2	1	2	1	3	2	2	1	3	2	3	4	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ARSD	NM_001669	exon5	c.G454A	p.G152S	TCACACCCTGGTG	.	16	3	25	0	.	47	T	2836254	C	T	2836254	3	4	24	1	0	0	0	0	1	0	0	0	988	623	22	3	1504	3	ARSD	23	2836254	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09		2836254	152434306	904	4008											
ARSE	415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2876371	2876371	+	Silent	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atgccaaggtcgtccgccatCagaagaaggatgttcggtcg	10	8	13	10	4	1	2	1	0	0	2	5	3	2	3	3	3	1	1	3	3	3	1	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000047	exon3	c.G129C	p.L43L	CGCCATCAGAAGA	.	16	15	27	0	.	.	G	2876371	C	G	2876371	2	3	24	1	0	0	0	0	0	0	0	1	989	813	29	5		5	ARSE	23	2876371	Silent	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	40117	2876371	152394189	905	4009											
STS	412	broad.mit.edu;bcgsc.ca	37	chrX	7177472	7177482	+	Frame_Shift_Del	DEL	TGGGATCTCTT	TGGGATCTCTT	-																															cacggcttcaattatttctaTgggatctctttgaccaatct																								novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STS	NM_000351	exon5	c.480_490del	p.160_164del	TTTCTATGGGATC	.	6	4	17	0	.	64	-	7177482	TGGGATCTCTT	-	7177472	7	5	24	1	0	1	0	1	0	0	0	0	15388	1471	51	0	498	0	STS	23	7177472	Frame_Shift_Del	DEL	TGGGATCTCTT	TCGA-W5-AA39-01A-11D-A417-09	4301101	7177472	148093088	906	4010											
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	20183169	20183169	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gttgctaggtttcaagtctcTatgaaccacctaattgaaat	12	14	7	8	0	2	2	1	2	1	0	3	2	2	2	2	1	2	3	2	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004586	exon18	c.A1612G	p.R538G	AGTCTCTATGAAC	.	48	41	93	0	.	.	C	20183169	T	C	20183169	3	2	24	1	0	0	0	0	1	0	0	0	13704	1530	53	4	630	4	RPS6KA3	23	20183169	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	13005697	20183169	135087391	907	4011											
CYBB	1536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	37653034	37653034	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gagacaggcaaaatgaaagtTatctcaattttgctcgaaag	16	10	9	6	1	1	2	1	1	1	1	3	4	1	2	0	1	1	3	0	1	6	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000397	exon5	c.T454G	p.Y152D	GAAAGTTATCTCA	.	25	20	33	0	.	.	G	37653034	T	G	37653034	3	3	24	1	0	0	0	0	1	0	0	0	4156	1754	61	4	472	4	CYBB	23	37653034	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	17469865	37653034	117617526	908	4012											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	39921601	39921601	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cttggctggtgacagatcatAgtccgaactgggctccggcc	7	9	13	12	2	1	2	1	1	0	1	3	3	3	2	3	4	1	2	3	4	2	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001123385	exon10	c.T4219C	p.Y1407H	GATCATAGTCCGA	.	28	23	72	0	.	.	G	39921601	A	G	39921601	3	3	24	1	0	0	0	0	1	0	0	0	1384	420	15	4	1072	4	BCOR	23	39921601	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	2268567	39921601	115348959	909	4013											
RBM10	8241	hgsc.bcm.edu	37	chrX	47030429	47030429	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tctcattctgtcggccaggaTtcctacgaggcctccccggg	5	10	11	15	3	2	0	1	0	2	0	6	2	4	1	5	4	1	0	5	4	1	3	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204468	exon4	c.T399C	p.D133D	CCAGGATTCCTAC	.	10	8	6	0	.	.	C	47030429	T	C	47030429	2	2	24	1	0	0	0	0	0	0	0	1	13163	1490	52	4		4	RBM10	23	47030429	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	7108828	47030429	108240131	910	4014											
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47918881	47918881	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	acttagtacattcatagggtTtctccccagtatgaatcctc	10	14	6	11	0	2	1	1	1	1	0	5	1	3	1	3	1	1	3	3	1	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037735	exon5	c.A950C	p.K317T	TAGGGTTTCTCCC	.	27	24	33	0	.	.	G	47918881	T	G	47918881	3	3	24	1	0	0	0	0	1	0	0	0	18111	1841	64	4	1027	4	ZNF630	23	47918881	Missense_Mutation	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	888452	47918881	107351679	911	4015											
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48661354	48661354	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaagaagaaaggcaaaatgaAgaagctcggccaagcaatgg	20	3	12	6	1	0	4	0	1	0	3	1	4	0	4	1	3	2	3	1	3	9	0	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006044	exon3	c.A170C	p.K57T	AAATGAAGAAGCT	.	8	7	18	0	.	.	C	48661354	A	C	48661354	3	2	24	1	0	0	0	0	1	0	0	0	7052	72	3	4	176	4	HDAC6	23	48661354	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	742473	48661354	106609206	912	4016											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	51644872	51644872	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	agattttggagatccctggtCcagaattccatttaccttct	9	15	7	10	0	1	3	0	0	1	3	4	4	4	3	4	2	1	0	4	2	2	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005333	exon13	c.C2351A	p.S784Y	CCTGGTCCAGAAT	.	28	27	36	0	.	.	A	51644872	C	A	51644872	3	1	24	1	0	0	0	0	1	0	0	0	9233	855	30	3	2397	3	MAGED1	23	51644872	Missense_Mutation	SNP	C	TCGA-W5-AA39-01A-11D-A417-09	2983518	51644872	103625688	913	4017											
MAGEH1	28986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	55479371	55479371	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agggttcgtaaccgatgctcTaaagactggccttgtaatta	11	12	10	8	2	1	1	0	0	1	1	2	2	1	1	2	2	2	4	2	2	5	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014061	exon1	c.T564G	p.S188S	ATGCTCTAAAGAC	.	15	14	30	0	.	.	G	55479371	T	G	55479371	2	3	24	1	0	0	0	0	0	0	0	1	9238	1509	53	4		4	MAGEH1	23	55479371	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	3834499	55479371	99791189	914	4018											
COL4A5	1287	bcgsc.ca	37	chrX	107909789	107909789	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aggcaaacccggtcaagatgGtattcctggaccagctggac	11	7	12	11	1	1	1	1	0	0	1	2	3	2	3	3	5	2	3	3	5	3	2	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	COL4A5	NM_000495	exon39	c.G3518A	p.G1173D	AAGATGGTATTCC	.	25	4	55	0	.	262	A	107909789	A	A	107909789	3	1	24	1	0	0	0	0	1	0	0	0	3717	1261	44	3	3672	3	COL4A5	23	107909789	Missense_Mutation	SNP	G	TCGA-W5-AA39-01A-11D-A417-09	52430418	107909789	47360771	915	4019											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	123200253	123200253	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cactatgtaatcctttggcaActtgctaagataactgaaag	14	12	7	8	0	0	2	0	1	0	1	1	2	1	2	1	1	3	3	1	1	6	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042749	exon23	c.A2232C	p.Q744H	TTGGCAACTTGCT	.	32	30	77	0	.	.	C	123200253	A	C	123200253	3	2	24	1	0	0	0	0	1	0	0	0	15299	40	2	4	2314	4	STAG2	23	123200253	Missense_Mutation	SNP	A	TCGA-W5-AA39-01A-11D-A417-09	15290464	123200253	32070307	916	4020											
OCRL	4952	hgsc.bcm.edu;broad.mit.edu	37	chrX	128724136	128724136	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cttgtagctactctcttcacTagtcttctcctgaggcctcc	5	15	6	15	0	4	1	1	1	3	0	7	1	5	1	3	1	2	2	3	1	3	6	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000276	exon24	c.T2595G	p.T865T	CTTCACTAGTCTT	.	9	8	13	0	.	.	G	128724136	T	G	128724136	2	3	24	1	0	0	0	0	0	0	0	1	10871	1509	53	4		4	OCRL	23	128724136	Silent	SNP	T	TCGA-W5-AA39-01A-11D-A417-09	5523883	128724136	26546424	917	4021											
ACAP3	116983	hgsc.bcm.edu	37	chr1	1237394	1237394	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	acaaagctctggagctgctgCcgcacggacctctgggcctg	7	7	13	14	2	2	0	0	0	2	0	2	2	2	2	3	3	4	4	3	3	1	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ACAP3_ENST00000354700,NS,carcinoma,0,2	ACAP3_ENST00000354700	NM_030649	exon5	c.G312A	p.R104R	CTGCTGCCGCACG	.	44	2	32	1	.	0	T	1237394	C	T	1237394	2	4	25	1	0	0	0	0	0	0	0	1	120	726	26	3		3	ACAP3	1	1237394	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		1237394	248013227	1	4022											
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12835030	12835030	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgagcctccaggccccacCtagactcctggagctggctg	7	7	12	15	0	0	2	0	1	0	1	2	4	2	3	6	3	2	2	6	3	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001080830	exon1	c.C20A	p.P7H	CCCCACCTAGACT	.	38	23	46	0	.	.	A	12835030	C	A	12835030	3	1	25	1	0	0	0	0	1	0	0	0	12476	681	24	3	22	3	PRAMEF12	1	12835030	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	11597636	12835030	236415591	2	4023											
CAP1	10487	broad.mit.edu	37	chr1	40530008	40530008	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taatcacctgtcagctgtcaGcgaaagtatccaggccctgg	10	9	10	12	1	3	0	3	0	0	0	4	1	4	0	3	2	2	2	3	2	3	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	CAP1,NS,carcinoma,0,1	CAP1	NM_006367	exon5	c.G404A	p.S135N	CTGTCAGCGAAAG	.	53	5	64	1	.	38	A	40530008	G	A	40530008	3	1	25	1	0	0	0	0	1	0	0	0	2637	971	34	3	418	3	CAP1	1	40530008	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	27694978	40530008	208720613	3	4024											
HFM1	164045	hgsc.bcm.edu;bcgsc.ca	37	chr1	91726906	91726906	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttcatcagcttcatcatcagGatgatacatactgggagaaa	14	11	8	8	0	5	2	5	1	0	1	5	4	5	3	0	2	3	1	0	2	3	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001017975	exon39	c.C4249A	p.P1417T	CATCAGGATGATA	.	74	4	72	0	.	.	T	91726906	G	T	91726906	3	4	25	1	0	0	0	0	1	0	0	0	7124	1174	41	3	62	3	HFM1	1	91726906	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	51196898	91726906	157523715	4	4025											
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccagtctgccgacaggTgcctccattgacacaaggtg	9	8	11	13	1	2	1	1	1	1	0	3	2	3	1	4	2	2	0	4	2	1	1	rs200464440	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NOTCH2_ENST00000369342,NS,carcinoma,0,2	NOTCH2_ENST00000369342	NM_001200001	exon4	c.A703T	p.T235S	GACAGGTGCCTCC	.	35	2	11	0	.	0	A	120539668	T	A	120539668	3	1	25	1	0	0	0	0	1	0	0	0	10595	1696	59	5	6836	5	NOTCH2	1	120539668	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	28812762	120539668	128710953	5	4026											
TCHH	7062	hgsc.bcm.edu	37	chr1	152084531	152084531	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctcgcgcctcagctGctgctcgcgcctcagctgct	2	10	11	18	4	2	0	2	0	0	0	4	0	2	0	2	0	7	7	2	0	0	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_007113	exon3	c.C1162G	p.Q388E	TCAGCTGCTGCTC	.	25	6	10	0	.	.	C	152084531	G	C	152084531	3	2	25	1	0	0	0	0	1	0	0	0	15760	1328	46	5	4673	5	TCHH	1	152084531	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	31544863	152084531	97166090	6	4027											
LCE2B	26239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152659372	152659372	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gccccctcccaagtgtcctcCcaagtgtaccccaaaatgtc	9	8	6	18	0	0	0	0	0	0	0	4	0	3	0	7	0	1	1	7	0	5	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LCE2B,NS,carcinoma,0,1	LCE2B	NM_014357	exon2	c.C53T	p.P18L	GTCCTCCCAAGTG	.	96	33	77	0	.	0	T	152659372	C	T	152659372	3	4	25	1	0	0	0	0	1	0	0	0	8705	623	22	3	55	3	LCE2B	1	152659372	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	574841	152659372	96591249	7	4028											
SMG7	9887	hgsc.bcm.edu;broad.mit.edu	37	chr1	183514431	183514431	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggaaaagcccgcctcaccActctggattccagcaggtaa	11	6	11	13	1	2	0	1	0	1	0	3	2	3	2	4	4	2	2	4	4	3	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_173156	exon16	c.A2354G	p.H785R	CTCACCACTCTGG	.	22	4	12	0	.	.	G	183514431	A	G	183514431	3	3	25	1	0	0	0	0	1	0	0	0	14852	159	6	4	2416	4	SMG7	1	183514431	Missense_Mutation	SNP	A	TCGA-W6-AA0S-01A-11D-A417-09	30855059	183514431	65736190	8	4029											
TPR	7175	hgsc.bcm.edu	37	chr1	186281176	186281176	+	RNA	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccttgactaatagccattaTtaatatcaatatattatatg	15	16	3	7	0	1	1	1	1	0	0	1	1	1	1	2	0	1	0	2	0	10	10	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CCATTATTAATAT	.	171	8	98	0	.	.	A	186281176	T	A	186281176	1	1	25	0	1	0	0	0	0	0	0	0	16477	1508	52	5		5	TPR	1	186281176	RNA	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	2766745	186281176	62969445	9	4030											
LPIN1	23175	hgsc.bcm.edu	37	chr2	11943082	11943082	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aggagcgcgcagctgccaagCcatcaaacgcaggccacctc	11	3	11	16	3	1	0	1	0	0	0	2	1	1	1	4	2	5	3	4	2	2	0	rs4669781	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LPIN1_ENST00000404113,NS,carcinoma,-2,1	LPIN1_ENST00000404113	NM_001261428	exon16	c.C2083A	p.P695T	GCCAAGCCATCAA	.	30	2	16	0	.	-2	A	11943082	C	A	11943082	3	1	25	1	0	0	0	0	1	0	0	0	8963	739	26	3	1878	3	LPIN1	2	11943082	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		11943082	231256291	10	4031											
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	65309725	65309725	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgagctggagagccaCgcagatcgcctgtatgactc	8	9	13	11	2	1	4	0	2	1	2	3	5	1	4	2	2	2	3	2	2	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	CEP68,NS,carcinoma,0,1	CEP68	NM_015147	exon6	c.C2160T	p.H720H	GAGCCACGCAGAT	.	27	16	30	0	.	0	T	65309725	C	T	65309725	2	4	25	1	0	0	0	0	0	0	0	1	3280	535	19	1		1	CEP68	2	65309725	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	53366643	65309725	177889648	11	4032											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141660609	141660609	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	tagatgattgctacaataatCcacaatttcacatgttttat	14	16	4	7	0	1	2	1	1	0	1	2	2	2	2	1	0	2	2	1	0	6	7	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_018557	exon23	c.G3646C	p.D1216H	AATAATCCACAAT	.	47	15	20	0	.	.	G	141660609	C	G	141660609	3	3	25	1	0	0	0	0	1	0	0	0	9000	855	30	5	10429	5	LRP1B	2	141660609	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	76350884	141660609	101538764	12	4033											
XIRP2	129446	hgsc.bcm.edu	37	chr2	168104508	168104508	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aataaggatataaagaaaaaGaatataaaccttcaaccaat	24	8	4	5	0	1	2	1	0	0	2	1	3	1	3	2	1	2	0	2	1	13	6	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	XIRP2,colon,carcinoma,0,1	XIRP2	NM_152381	exon9	c.G6606T	p.K2202N	GAAAAAGAATATA	.	49	2	28	0	.	0	T	168104508	G	T	168104508	3	4	25	1	0	0	0	0	1	0	0	0	17490	933	33	3	6636	3	XIRP2	2	168104508	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	26443899	168104508	75094865	13	4034											
MYO3B	140469	hgsc.bcm.edu;bcgsc.ca	37	chr2	171371510	171371510	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agtgccgaggttcaagactgCagcgagcctggtgaccataa	11	7	13	10	2	1	2	1	1	0	1	1	4	1	2	3	2	4	2	3	2	2	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138995	exon29	c.C3450T	p.C1150C	AGACTGCAGCGAG	.	60	4	46	0	.	.	T	171371510	C	T	171371510	2	4	25	1	0	0	0	0	0	0	0	1	10125	718	25	3		3	MYO3B	2	171371510	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	3267002	171371510	71827863	14	4035											
SF3B1	23451	hgsc.bcm.edu	37	chr2	198273209	198273209	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcatcccaccgtgattttCttttactggctccaggagtc	6	16	7	12	1	2	1	1	1	1	0	5	2	4	2	3	2	1	1	3	2	1	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SF3B1,NS,carcinoma,0,1	SF3B1	NM_012433	exon8	c.G1001T	p.R334I	GATTTTCTTTTAC	.	45	2	44	0	.	0	A	198273209	C	A	198273209	3	1	25	1	0	0	0	0	1	0	0	0	14203	913	32	3	2985	3	SF3B1	2	198273209	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	26901699	198273209	44926164	15	4036											
SP140L	93349	hgsc.bcm.edu	37	chr2	231256872	231256873	+	Frame_Shift_Ins	INS	-	-	G																															tggaatttgaaatcaaaggaINSggctacgcaagatcaaagaa																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138402	exon12	c.1035_1036insG	p.G345fs	CAAAGGAGGCTAC	.	111	42	61	0	.	.	G	231256873	-	G	231256872	7	5	25	1	0	1	1	0	0	0	0	0	15017	291	11	0	1081	0	SP140L	2	231256872	Frame_Shift_Ins	INS	-	TCGA-W6-AA0S-01A-11D-A417-09	32983663	231256872	11942501	16	4037											
AQP12B	653437	hgsc.bcm.edu	37	chr2	241621970	241621970	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggaactcctgcagggacacGgtggggttggccgaggcccc	7	5	17	12	2	0	0	0	0	0	0	1	3	1	2	4	7	2	2	4	7	1	1	rs370087461		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	AQP12B,NS,carcinoma,0,1	AQP12B	NM_001102467	exon1	c.C285T	p.T95T	GGACACGGTGGGG	.	68	5	46	1	.	0	A	241621970	G	A	241621970	2	1	25	1	0	0	0	0	0	0	0	1	822	1103	39	1		1	AQP12B	2	241621970	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	10365098	241621970	1577403	17	4038											
THOC7	80145	hgsc.bcm.edu	37	chr3	63825392	63825392	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tcttcactagcagattaattCtccgatcatctccagcacca	11	12	4	14	1	5	1	2	0	3	1	7	2	5	1	3	0	2	2	3	0	2	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	THOC7,NS,carcinoma,0,1	THOC7	NM_025075	exon2	c.G77A	p.R26K	TTAATTCTCCGAT	.	37	2	42	1	.	0	T	63825392	C	T	63825392	3	4	25	1	0	0	0	0	1	0	0	0	15930	913	32	3	565	3	THOC7	3	63825392	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		63825392	134197038	18	4039											
GBE1	2632	hgsc.bcm.edu	37	chr3	81539564	81539564	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gaaatcaggcctcttcaattCggcagatccacattctgaag	12	10	8	11	1	4	2	2	1	2	1	6	3	5	2	2	2	0	1	2	2	3	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GBE1_ENST00000429644,NS,carcinoma,0,2	GBE1_ENST00000429644	NM_000158	exon16	c.G2103A	p.P701P	TCAATTCGGCAGA	.	26	2	30	0	.	0	T	81539564	C	T	81539564	2	4	25	1	0	0	0	0	0	0	0	1	6310	871	31	1		1	GBE1	3	81539564	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	17714172	81539564	116482866	19	4040											
TFG	10342	hgsc.bcm.edu	37	chr3	100467371	100467371	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaacctggacctggttatcGataaggaggctcctctacac	10	9	9	13	1	1	0	0	0	1	0	3	3	2	2	4	4	2	2	4	4	4	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	TFG_ENST00000240851,colon,carcinoma,0,1	TFG_ENST00000240851	NM_006070	exon8	c.G1199T	p.R400L	GTTATCGATAAGG	.	39	2	24	0	.	0	T	100467371	G	T	100467371	3	4	25	1	0	0	0	0	1	0	0	0	15866	1058	37	2	1225	2	TFG	3	100467371	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	18927807	100467371	97555059	20	4041											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167023497	167023497	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tacagattgctcaattccaaGgattctttgatgtcttgaga	11	15	8	7	0	3	3	1	2	2	2	4	5	4	4	1	1	2	1	1	1	3	6	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024687	exon17	c.C1659A	p.S553S	TTCCAAGGATTCT	.	109	48	51	0	.	.	T	167023497	G	T	167023497	2	4	25	1	0	0	0	0	0	0	0	1	17576	987	35	3		3	ZBBX	3	167023497	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	66556126	167023497	30998933	21	4042											
NLGN1	22871	hgsc.bcm.edu	37	chr3	173322868	173322868	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ctatatttaaatatatatgtCccgactgaggatggtgagtt	12	15	9	5	1	0	2	0	2	0	0	1	4	1	3	1	2	0	1	1	2	7	8	rs151237969		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NLGN1,shoulder,malignant_melanoma,0,1	NLGN1	NM_014932	exon3	c.C480T	p.V160V	ATATGTCCCGACT	.	26	2	11	0	.	0	T	173322868	C	T	173322868	2	4	25	1	0	0	0	0	0	0	0	1	10508	842	30	3		3	NLGN1	3	173322868	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	6299371	173322868	24699562	22	4043											
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	173999084	173999084	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccattcacattcaacaacCagggtatagccagataagag	15	7	7	12	0	2	2	2	0	0	2	2	2	2	2	4	1	3	1	4	1	5	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_014932	exon7	c.C2463A	p.T821T	AACAACCAGGGTA	.	87	22	40	0	.	.	A	173999084	C	A	173999084	2	1	25	1	0	0	0	0	0	0	0	1	10508	581	21	3		3	NLGN1	3	173999084	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	676216	173999084	24023346	23	4044											
EXOC1	55763	hgsc.bcm.edu	37	chr4	56756490	56756490	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gatctcagtcatcttccctgTtggatatgggaaacatgtct	9	14	9	9	0	4	0	2	0	3	0	6	3	5	2	1	2	1	1	1	2	2	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_018261	exon12	c.T1477G	p.L493V	TCCCTGTTGGATA	.	53	15	49	0	.	.	G	56756490	T	G	56756490	3	3	25	1	0	0	0	0	1	0	0	0	5328	1722	60	4	1519	4	EXOC1	4	56756490	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09		56756490	134397786	24	4045											
PCDHGA9	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140783658	140783658	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccgagactccgggaagaatgGtcaagttgtctgttctatcc	9	11	11	10	2	3	2	1	0	2	2	5	4	5	3	3	2	0	2	3	2	4	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	PCDHGA9	NM_032089	exon1	c.G1139C	p.G380A	AGAATGGTCAAGT	.	56	17	37	1	.	110	C	140783658	G	C	140783658	3	2	25	1	0	0	0	0	1	0	0	0	11608	1261	44	5	1141	5	PCDHGA9	5	140783658	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		140783658	40131602	25	4046											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147029994	147029994	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcagcctccttgaccagaaaGagttgttcgtccaaagcctc	10	10	8	13	1	1	3	1	1	0	2	5	3	3	3	5	0	2	2	5	0	2	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001270941	exon4	c.C744G	p.L248L	CAGAAAGAGTTGT	.	92	41	47	0	.	.	C	147029994	G	C	147029994	2	2	25	1	0	0	0	0	0	0	0	1	7985	929	33	5		5	JAKMIP2	5	147029994	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	6246336	147029994	33885266	26	4047											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	147040819	147040819	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctctggatctctccatcacGtaccttcaccgtccttgaca	7	12	5	17	2	4	1	2	1	2	0	7	2	6	2	5	1	1	1	5	1	1	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001270941	exon3	c.C319T	p.R107C	CATCACGTACCTT	.	16	5	14	0	.	.	A	147040819	G	A	147040819	3	1	25	1	0	0	0	0	1	0	0	0	7985	1145	40	1	2189	1	JAKMIP2	5	147040819	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	10825	147040819	33874441	27	4048											
ZKSCAN3	80317	hgsc.bcm.edu	37	chr6	28333606	28333606	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	catagctcagaccttatcaaGcatcagagaacccacactgg	14	7	7	13	0	3	2	3	0	0	2	3	3	3	2	2	1	3	2	2	1	4	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024493	exon6	c.G1161A	p.K387K	TATCAAGCATCAG	.	35	4	29	0	.	.	A	28333606	G	A	28333606	2	1	25	1	0	0	0	0	0	0	0	1	17746	962	34	3		3	ZKSCAN3	6	28333606	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		28333606	142781461	28	4049											
BRD2	6046	hgsc.bcm.edu	37	chr6	32945611	32945612	+	Frame_Shift_Ins	INS	-	-	C																															taccagtctctactgccatgINSccccctggcttggccaaatc																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001113182	exon9	c.1407_1408insC	p.M469fs	TGCCATGCCCCCT	.	18	12	24	0	.	.	C	32945612	-	C	32945611	7	5	25	1	0	1	1	0	0	0	0	0	1504	1319	46	0	1437	0	BRD2	6	32945611	Frame_Shift_Ins	INS	-	TCGA-W6-AA0S-01A-11D-A417-09	4612005	32945611	138169456	29	4050											
ITPR3	3710	hgsc.bcm.edu	37	chr6	33661448	33661448	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagaacaagaccgactacaCgggccctgagagctacgtgg	13	4	13	11	3	0	3	0	1	0	3	0	6	0	3	2	2	4	1	2	2	5	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ITPR3_ENST00000374316,NS,adenocarcinoma,0,2	ITPR3_ENST00000374316	NM_002224	exon56	c.C7751T	p.T2584M	ACTACACGGGCCC	.	39	2	34	0	.	0	T	33661448	C	T	33661448	3	4	25	1	0	0	0	0	1	0	0	0	7966	536	19	1	7973	1	ITPR3	6	33661448	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	715837	33661448	137453619	30	4051											
KCNQ5	56479	hgsc.bcm.edu	37	chr6	73834220	73834220	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cacctgaaggaaagaacaagGggaagcatcaagcaggtttg	16	5	13	7	0	1	2	1	1	0	1	1	4	1	4	1	4	3	3	1	4	6	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	KCNQ5,NS,malignant_melanoma,0,1	KCNQ5	NM_001160133	exon9	c.G1232T	p.G411V	AACAAGGGGAAGC	.	37	2	24	0	.	0	T	73834220	G	T	73834220	3	4	25	1	0	0	0	0	1	0	0	0	8130	1232	43	3	1266	3	KCNQ5	6	73834220	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	40172772	73834220	97280847	31	4052											
MTO1	25821	bcgsc.ca	37	chr6	74176311	74176311	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aacacactgggaaatgccgtGtcagtggggttgttttgggt	8	12	15	6	1	1	0	1	0	0	0	1	1	1	1	1	4	2	2	1	4	2	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MTO1	NM_133645	exon3	c.G517T	p.V173F	TGCCGTGTCAGTG	.	52	4	51	0	.	59	T	74176311	T	T	74176311	3	4	25	1	0	0	0	0	1	0	0	0	10001	1377	48	3	527	3	MTO1	6	74176311	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	342091	74176311	96938756	32	4053											
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	112450203	112450203	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acaatggtgaagactcaatgGgacactcataaagagaagtg	17	7	11	6	0	2	3	2	1	0	2	2	5	2	4	0	2	0	0	0	2	6	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001105206	exon31	c.C4208A	p.P1403H	TCAATGGGACACT	.	50	29	55	0	.	.	T	112450203	G	T	112450203	3	4	25	1	0	0	0	0	1	0	0	0	8647	1232	43	3	1299	3	LAMA4	6	112450203	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	38273892	112450203	58664864	33	4054											
TAAR8	83551	hgsc.bcm.edu	37	chr6	132874213	132874213	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttgtgcttcatctgcatcGacaggtacattgtggttact	8	15	9	9	1	2	0	1	0	1	0	3	1	2	0	0	2	4	4	0	2	2	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	TAAR8,colon,carcinoma,0,1	TAAR8	NM_053278	exon1	c.G382T	p.D128Y	TGCATCGACAGGT	.	30	2	28	0	.	0	T	132874213	G	T	132874213	3	4	25	1	0	0	0	0	1	0	0	0	15550	1058	37	2	384	2	TAAR8	6	132874213	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	20424010	132874213	38240854	34	4055											
OSBPL3	26031	hgsc.bcm.edu	37	chr7	24849546	24849546	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cactgtgccttcaatctcatGggcattagtgctccagtatt	8	14	8	11	0	2	0	2	0	1	0	4	0	3	0	2	1	2	3	2	1	3	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	OSBPL3,NS,malignant_melanoma,0,1	OSBPL3	NM_015550	exon20	c.C2197A	p.H733N	TCTCATGGGCATT	.	44	2	31	0	.	0	T	24849546	G	T	24849546	3	4	25	1	0	0	0	0	1	0	0	0	11326	1348	47	3	482	3	OSBPL3	7	24849546	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		24849546	134289117	35	4056											
SAMD9	54809	hgsc.bcm.edu	37	chr7	92734778	92734778	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcattgctaaatttcatcttGacatcctcttctgtggctgt	7	18	6	10	0	5	1	2	1	3	0	6	1	6	1	1	1	1	2	1	1	2	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001193307	exon2	c.C633A	p.V211V	CATCTTGACATCC	.	77	4	45	0	.	.	T	92734778	G	T	92734778	2	4	25	1	0	0	0	0	0	0	0	1	13878	1277	45	3		3	SAMD9	7	92734778	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	67885232	92734778	66403885	36	4057											
ASNS	440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	97487633	97487633	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtcttccatgccaattGcaaatgtctggagaggatac	10	11	11	9	0	2	1	0	0	2	1	3	3	3	2	2	3	3	2	2	3	3	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_133436	exon7	c.C860A	p.A287E	CCAATTGCAAATG	.	26	4	21	0	.	.	T	97487633	G	T	97487633	3	4	25	1	0	0	0	0	1	0	0	0	1047	1319	46	3	853	3	ASNS	7	97487633	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	4752855	97487633	61651030	37	4058											
LMTK2	22853	hgsc.bcm.edu	37	chr7	97820972	97820972	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaccagaaaagagacccGcggctgaagatgtgcacagg	13	5	13	10	2	1	4	1	1	0	3	1	5	1	4	2	2	1	2	2	2	3	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LMTK2_ENST00000297293,colon,carcinoma,0,2	LMTK2_ENST00000297293	NM_014916	exon11	c.G1195T	p.A399S	AGACCCGCGGCTG	.	46	3	29	0	.	0	T	97820972	G	T	97820972	3	4	25	1	0	0	0	0	1	0	0	0	8900	1087	38	2	1237	2	LMTK2	7	97820972	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	333339	97820972	61317691	38	4059											
TAF6	9179	bcgsc.ca	37	chr7	99707848	99707848	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcccagctcagccaagcctGcgatggagccataacgagtc	10	6	11	14	2	1	0	1	0	0	0	3	3	2	1	4	1	6	1	4	1	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	TAF6	NM_001190415	exon11	c.C1244A	p.A415E	AAGCCTGCGATGG	.	45	4	37	0	.	55	T	99707848	T	T	99707848	3	4	25	1	0	0	0	0	1	0	0	0	15587	1319	46	3	920	3	TAF6	7	99707848	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	1886876	99707848	59430815	39	4060											
GRM8	2918	hgsc.bcm.edu	37	chr7	126883170	126883170	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	catactcctggctgtgagttCtttgcatcattgtgaggatc	7	15	10	9	0	2	2	1	2	1	0	4	3	3	3	1	2	2	3	1	2	1	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GRM8_ENST00000405249,NS,carcinoma,0,8	GRM8_ENST00000405249	NM_000845	exon1	c.G89A	p.R30K	TGAGTTCTTTGCA	.	50	2	34	0	.	0	T	126883170	C	T	126883170	3	4	25	1	0	0	0	0	1	0	0	0	6844	913	32	3	2727	3	GRM8	7	126883170	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	27175322	126883170	32255493	40	4061											
PLXNA4	91584	hgsc.bcm.edu	37	chr7	131887440	131887440	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtgcacttgcttttggCaccagacagctccagccact	7	12	9	13	0	0	1	0	0	0	1	1	1	1	1	3	1	4	5	3	1	0	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_020911	exon12	c.G2551A	p.A851T	TTTTGGCACCAGA	.	99	4	53	0	.	.	T	131887440	C	T	131887440	3	4	25	1	0	0	0	0	1	0	0	0	12170	710	25	3	3217	3	PLXNA4	7	131887440	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	5004270	131887440	27251223	41	4062											
TAS2R3	50831	broad.mit.edu	37	chr7	141464042	141464042	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcaattgtttcattgaGttggtcaatggtagcagctg	8	15	12	6	0	3	1	3	1	0	0	3	1	3	1	0	3	2	5	0	3	3	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	TAS2R3	NM_016943	exon1	c.G84T	p.E28D	CATTGAGTTGGTC	.	37	3	26	0	.	40	T	141464042	G	T	141464042	3	4	25	1	0	0	0	0	1	0	0	0	15629	1020	36	3	86	3	TAS2R3	7	141464042	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	9576602	141464042	17674621	42	4063											
MLL3	58508	broad.mit.edu	37	chr7	151962255	151962255	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	agaactgatctaagaggtctCccgggctgtcgcacactgca	10	8	11	12	2	2	3	0	1	2	2	4	3	2	3	1	2	2	3	1	2	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MLL3	NM_170606	exon8	c.G1052A	p.G351E	AGGTCTCCCGGGC	.	118	7	116	0	.	1564	T	151962255	C	T	151962255	3	4	25	1	0	0	0	0	1	0	0	0	9670	855	30	3	13891	3	MLL3	7	151962255	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	10498213	151962255	7176408	43	4064											
ANK1	286	hgsc.bcm.edu	37	chr8	41571689	41571689	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttacccaggcagggctgtgCggggagccgccccggggaag	6	4	18	13	3	0	0	0	0	0	0	0	2	0	2	4	6	3	2	4	6	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001142446	exon16	c.G1884A	p.P628P	GCTGTGCGGGGAG	.	116	5	77	0	.	.	T	41571689	C	T	41571689	2	4	25	1	0	0	0	0	0	0	0	1	616	755	27	1		1	ANK1	8	41571689	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		41571689	104792333	44	4065											
PTPRD	5789	hgsc.bcm.edu	37	chr9	8331583	8331583	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaaatggaaacttaccTgcaatggactgaaatgggtc	14	10	9	8	0	1	1	1	1	0	0	2	3	1	3	1	3	3	1	1	3	5	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PTPRD_ENST00000346816,NS,carcinoma,0,2	PTPRD_ENST00000346816	NM_002839	exon44	c.A5533T	p.S1845C	CTTACCTGCAATG	.	25	4	27	1	.	0	A	8331583	T	A	8331583	3	1	25	1	0	0	0	0	1	0	0	0	12851	1594	55	5	217	5	PTPRD	9	8331583	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09		8331583	132881848	45	4066											
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	13222402	13222402	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgatcaagagcctgtcCattgatagcaagaatttgat	12	13	9	7	0	2	5	1	3	1	2	3	5	3	5	2	0	2	1	2	0	4	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_003829	exon6	c.G577A	p.G193R	CCTGTCCATTGAT	.	37	12	25	0	.	.	T	13222402	C	T	13222402	3	4	25	1	0	0	0	0	1	0	0	0	9771	603	21	3	5712	3	MPDZ	9	13222402	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	4890819	13222402	127991029	46	4067											
SMC5	23137	hgsc.bcm.edu	37	chr9	72882839	72882839	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttttcttttttatgtcttagGttgggttttttgtgaagaga	6	23	10	2	0	2	2	0	1	2	1	2	3	2	2	0	2	0	2	0	2	3	10	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_015110	exon3	c.G328T	p.V110F	TCTTAGGTTGGGT	.	99	4	57	0	.	.	T	72882839	G	T	72882839	3	4	25	1	0	0	0	0	1	0	0	0	14840	1275	44	3	338	3	SMC5	9	72882839	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	59660437	72882839	68330592	47	4068											
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	98242716	98242716	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgtggcggggcagtctggatCggccggattgaggcaggggc	5	7	21	8	3	1	1	0	1	1	0	2	3	1	3	1	9	0	2	1	9	0	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_000264	exon6	c.G901A	p.D301N	CTGGATCGGCCGG	.	28	12	21	0	.	.	T	98242716	C	T	98242716	3	4	25	1	0	0	0	0	1	0	0	0	12779	884	31	1	3514	1	PTCH1	9	98242716	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	25359877	98242716	42970715	48	4069											
ACTL7A	10881	hgsc.bcm.edu	37	chr9	111625685	111625685	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atggggaacatcctgctctgCgggggcagcacgatgctcag	8	7	15	11	2	2	0	1	0	1	0	3	2	3	1	1	4	5	4	1	4	1	0	rs371393958		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ACTL7A,NS,carcinoma,0,1	ACTL7A	NM_006687	exon1	c.C1083T	p.C361C	GCTCTGCGGGGGC	.	33	3	22	0	.	0	T	111625685	C	T	111625685	2	4	25	1	0	0	0	0	0	0	0	1	200	776	27	1		1	ACTL7A	9	111625685	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	13382969	111625685	29587746	49	4070											
COL27A1	85301	hgsc.bcm.edu	37	chr9	117070033	117070033	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactcatggtggacagacgtGtctcaagcccatcacggcct	9	8	10	14	2	3	1	3	0	1	1	4	2	3	2	2	3	1	0	2	3	1	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	COL27A1,colon,carcinoma,-1,1	COL27A1	NM_032888	exon59	c.G5192A	p.C1731Y	AGACGTGTCTCAA	.	20	2	23	0	.	-1	A	117070033	G	A	117070033	3	1	25	1	0	0	0	0	1	0	0	0	3708	1377	48	3	5426	3	COL27A1	9	117070033	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	5444348	117070033	24143398	50	4071											
GTF3C4	9329	hgsc.bcm.edu	37	chr9	135564267	135564267	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgtcctccttttgcaGatcccgactggattaagagg	8	12	9	12	1	0	2	0	0	0	2	3	4	3	3	4	2	1	1	4	2	1	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GTF3C4,right_upper_lobe,carcinoma,0,1	GTF3C4	NM_012204	exon5	c.2405-1G>T	.	TTTGCAGATCCCG	.	39	2	33	0	.	0	T	135564267	G	T	135564267	5	4	25	1	0	0	0	0	0	0	1	0	6916	956	33	3	2422	3	GTF3C4	9	135564267	Splice_Site	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	18494234	135564267	5649164	51	4072											
EXD3	54932	hgsc.bcm.edu;broad.mit.edu	37	chr9	140201611	140201611	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccagctgcagccgggtgcCgtcggccagcatgtccggtg	4	7	16	14	4	0	0	0	0	0	0	2	0	1	0	5	3	6	3	5	3	0	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_017820	exon22	c.G2422A	p.G808S	GGGTGCCGTCGGC	.	15	7	9	0	.	.	T	140201611	C	T	140201611	3	4	25	1	0	0	0	0	1	0	0	0	5326	652	23	1	212	1	EXD3	9	140201611	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	4637344	140201611	1011820	52	4073											
HERC4	26091	hgsc.bcm.edu	37	chr10	69785435	69785435	+	Splice_Site	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aagtaaacactccaccttccTaaaaaaagacaaaacccctt	19	7	2	13	0	0	1	0	0	0	1	2	1	2	1	5	0	2	1	5	0	9	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,1	.	NM_022079	exon9	c.778-2A>T	.	CCTTCCTAAAAAA	.	144	0	85	0	.	78	A	69785435	T	A	69785435	5	1	25	1	0	0	0	0	0	0	1	0	7101	1536	53	5	2473	5	HERC4	10	69785435	Splice_Site	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09		69785435	65749312	53	4074											
DNMBP	23268	hgsc.bcm.edu	37	chr10	101639890	101639890	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttggtcacattcttttggcGgaggagatgcatcttgaggc	7	13	13	8	1	3	2	1	1	2	1	3	4	3	3	0	5	1	1	0	5	0	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DNMBP,colon,carcinoma,0,1	DNMBP	NM_015221	exon16	c.C4226A	p.P1409Q	TTTGGCGGAGGAG	.	31	2	24	1	.	0	T	101639890	G	T	101639890	3	4	25	1	0	0	0	0	1	0	0	0	4701	1116	39	2	515	2	DNMBP	10	101639890	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	31854455	101639890	33894857	54	4075											
NOLC1	9221	hgsc.bcm.edu;bcgsc.ca	37	chr10	103916788	103916788	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctacagacacagcaggatGccaatgcctcttccctctta	10	11	6	14	0	3	1	0	0	3	1	4	2	4	2	3	1	4	1	3	1	3	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004741	exon2	c.G133A	p.A45T	CAGGATGCCAATG	.	75	4	50	0	.	.	A	103916788	G	A	103916788	3	1	25	1	0	0	0	0	1	0	0	0	10576	1319	46	3	139	3	NOLC1	10	103916788	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	2276898	103916788	31617959	55	4076											
MUC6	4588	bcgsc.ca	37	chr11	1017988	1017988	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgtggtctgagggtgtgatgGggttggataggtagtggtgg	5	13	22	1	0	1	2	0	2	1	0	1	3	1	3	0	8	0	2	0	8	2	3	rs112579249	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MUC6	NM_005961	exon31	c.C4813A	p.P1605T	GTGATGGGGTTGG	.	68	13	49	1	G|0.500;T|0.500	408	T	1017988	T	T	1017988	3	4	25	1	0	0	0	0	1	0	0	0	10028	1232	43	3	2518	3	MUC6	11	1017988	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		1017988	133988528	56	4077											
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	11969496	11969496	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ttttttttgtgcttagggttGatggtgcatgttgataaaag	8	19	12	2	0	0	2	0	2	0	0	0	2	0	2	0	2	2	4	0	2	3	8	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_017944	exon20	c.G2892C	p.L964F	AGGGTTGATGGTG	.	50	25	37	0	.	.	C	11969496	G	C	11969496	3	2	25	1	0	0	0	0	1	0	0	0	17138	1281	45	5	2970	5	USP47	11	11969496	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	10951508	11969496	123037020	57	4078											
PRMT3	10196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	20473693	20473693	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggctattttcttctgttTgagtctatgttagattctgt	6	20	9	6	0	4	2	0	1	4	1	4	2	4	2	0	1	0	3	0	1	3	8	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_005788	exon11	c.T1011G	p.F337L	TCTGTTTGAGTCT	.	110	7	85	0	.	.	G	20473693	T	G	20473693	3	3	25	1	0	0	0	0	1	0	0	0	12590	1809	63	4	1053	4	PRMT3	11	20473693	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	8504197	20473693	114532823	58	4079											
AGBL2	79841	hgsc.bcm.edu	37	chr11	47727437	47727437	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgttgatggcttctatctGtctgtgcacagctgaagata	8	15	10	8	0	4	3	0	2	4	1	4	3	4	3	0	1	2	4	0	1	3	4	rs200616669		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024783	exon5	c.C265A	p.Q89K	CTATCTGTCTGTG	.	97	4	68	0	0.001	.	T	47727437	G	T	47727437	3	4	25	1	0	0	0	0	1	0	0	0	373	1386	48	3	2503	3	AGBL2	11	47727437	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	27253744	47727437	87279079	59	4080											
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56949739	56949739	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaccgcatcacagcagtgccGcctggctacctcacatgcta	10	7	8	16	2	2	0	2	0	0	0	2	0	2	0	4	1	5	4	4	1	3	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001005210	exon1	c.G372A	p.P124P	AGTGCCGCCTGGC	.	68	18	33	0	.	.	A	56949739	G	A	56949739	2	1	25	1	0	0	0	0	0	0	0	1	9056	1074	38	1		1	LRRC55	11	56949739	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	9222302	56949739	78056777	60	4081											
WDR74	54663	hgsc.bcm.edu	37	chr11	62601270	62601270	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gagagacaacttaccttatgCtccagaccccgtggattctg	10	10	9	12	1	1	2	0	0	1	2	2	5	2	3	4	1	3	1	4	1	3	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	WDR74_ENST00000525239,NS,carcinoma,0,2	WDR74_ENST00000525239	NM_018093	exon10	c.G915A	p.E305E	CTTATGCTCCAGA	.	47	2	34	0	.	0	T	62601270	C	T	62601270	2	4	25	1	0	0	0	0	0	0	0	1	17384	796	28	3		3	WDR74	11	62601270	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	5651531	62601270	72405246	61	4082											
FAT3	120114	hgsc.bcm.edu	37	chr11	92599977	92599977	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatcttgggcatctcgggccGtgctgtcaacgacgggagct	7	9	14	11	4	3	0	1	0	2	0	4	2	3	1	1	3	3	3	1	3	2	1	rs376837097		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	FAT3_ENST00000409404,NS,carcinoma,0,3	FAT3_ENST00000409404	NM_001008781	exon21	c.G11729T	p.R3910L	CGGGCCGTGCTGT	.	54	3	27	0	.	0	T	92599977	G	T	92599977	3	4	25	1	0	0	0	0	1	0	0	0	5724	1145	40	2	11811	2	FAT3	11	92599977	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	29998707	92599977	42406539	62	4083											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102100578	102100578	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaggagctgatgccaagtctGcaggaagctttgagttctga	10	10	14	7	0	2	3	0	3	2	0	2	6	2	5	1	2	4	4	1	2	2	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001130145	exon9	c.G1422T	p.L474L	AAGTCTGCAGGAA	.	60	14	43	0	.	.	T	102100578	G	T	102100578	2	4	25	1	0	0	0	0	0	0	0	1	17526	1306	46	3		3	YAP1	11	102100578	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	9500601	102100578	32905938	63	4084											
DDX10	1662	hgsc.bcm.edu;bcgsc.ca	37	chr11	108590611	108590611	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tacctatacctgaatatgccCtgtaagtattcataatatag	14	14	5	8	0	1	1	1	1	0	0	1	1	1	1	3	0	3	2	3	0	10	10	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004398	exon12	c.C1498A	p.L500M	TATGCCCTGTAAG	.	97	4	74	0	.	.	A	108590611	C	A	108590611	3	1	25	1	0	0	0	0	1	0	0	0	4365	695	24	3	1544	3	DDX10	11	108590611	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	6490033	108590611	26415905	64	4085											
PIH1D2	120379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111942424	111942424	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctggatgagtggttgattggGgagctgggatccttgtccac	6	12	16	7	0	0	2	0	2	0	0	2	5	2	5	2	5	1	2	2	5	0	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001082619	exon3	c.C236T	p.P79L	GATTGGGGAGCTG	.	66	22	56	0	.	.	A	111942424	G	A	111942424	3	1	25	1	0	0	0	0	1	0	0	0	11955	1232	43	3	785	3	PIH1D2	11	111942424	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	3351813	111942424	23064092	65	4086											
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	112070469	112070469	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagaaggtggaccttGgggagacaatccatggagtc	11	7	14	9	0	0	2	0	0	0	2	3	6	2	4	3	5	0	0	3	5	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_031938	exon6	c.G784A	p.G262R	GACCTTGGGGAGA	.	64	21	37	0	.	.	A	112070469	G	A	112070469	3	1	25	1	0	0	0	0	1	0	0	0	1383	1348	47	3	806	3	BCO2	11	112070469	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	128045	112070469	22936047	66	4087											
OR8B3	390271	hgsc.bcm.edu	37	chr11	124266927	124266927	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtaacattcagagatgacAaaaaagagaaagaaaaacag	24	5	8	4	0	1	4	1	1	0	3	1	6	1	4	0	0	2	1	0	0	7	2	rs142812088		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	OR8B3,NS,carcinoma,0,1	OR8B3	NM_001005467	exon1	c.T321C	p.F107F	GATGACAAAAAAG	.	56	5	45	1	0.000	0	G	124266927	A	G	124266927	2	3	25	1	0	0	0	0	0	0	0	1	11275	127	5	4		4	OR8B3	11	124266927	Silent	SNP	A	TCGA-W6-AA0S-01A-11D-A417-09	12196458	124266927	10739589	67	4088											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	23757376	23757376	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctgtgtgaatgctggtaggaGatacagcagcaccaaggttg	11	9	14	7	0	0	2	0	1	0	1	0	3	0	2	1	3	4	5	1	3	4	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SOX5,colon,carcinoma,-1,1	SOX5	NM_006940	exon9	c.C1109T	p.S370F	GTAGGAGATACAG	.	43	19	24	0	.	-1	A	23757376	G	A	23757376	3	1	25	1	0	0	0	0	1	0	0	0	15008	942	33	3	1220	3	SOX5	12	23757376	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		23757376	110094519	68	4089											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26755323	26755323	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cttttcatagggtatctgcaGaagatccaacaccaccgaat	13	10	7	11	1	2	2	1	0	1	2	3	3	3	2	3	1	2	2	3	1	5	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3658T	p.L1220L	TCTGCAGAAGATC	.	160	49	139	0	.	.	A	26755323	G	A	26755323	2	1	25	1	0	0	0	0	0	0	0	1	7965	933	33	3		3	ITPR2	12	26755323	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	2997947	26755323	107096572	69	4090			1	5		6	6	313	G		2.265622e-17
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	26755371	26755371	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	catatttttcagtaatcgttGatgttgattccgacactttt	9	19	6	7	2	1	2	1	2	0	0	3	3	2	2	1	0	0	3	1	0	2	9	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3610T	p.Q1204X	ATCGTTGATGTTG	.	116	34	97	0	.	.	A	26755371	G	A	26755371	4	1	25	1	0	0	0	0	0	1	0	0	7965	1299	45	3	4615	3	ITPR2	12	26755371	Nonsense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	48	26755371	107096524	70	4091			1	5		6	6	313	G		2.265622e-17
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26755405	26755405	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cactttttattctgcacacaGagtttacttagcctgatcaa	11	15	5	10	0	2	2	1	1	1	1	2	2	2	2	1	0	3	2	1	0	4	7	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3576T	p.L1192L	CACACAGAGTTTA	.	118	29	92	0	.	.	A	26755405	G	A	26755405	2	1	25	1	0	0	0	0	0	0	0	1	7965	929	33	3		3	ITPR2	12	26755405	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	34	26755405	107096490	71	4092			1	5		6	6	313	G		2.265622e-17
ITPR2	3709	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	26755420	26755420	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	acacagagtttacttagcctGatcaaaatctttaaaaggaa	17	11	6	7	0	2	2	1	1	1	1	2	3	2	3	1	1	2	1	1	1	7	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3561G	p.I1187M	TAGCCTGATCAAA	.	115	25	92	0	.	.	C	26755420	G	C	26755420	3	2	25	1	0	0	0	0	1	0	0	0	7965	1280	45	5	4664	5	ITPR2	12	26755420	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	15	26755420	107096475	72	4093			1	5		6	6	313	G		2.265622e-17
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26755574	26755574	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttacaatccggtagttattGctcttgttgctgtcaatctg	7	18	8	8	1	3	0	1	0	2	0	4	0	4	0	1	1	3	5	1	1	5	7	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon27	c.C3528G	p.S1176R	GTTATTGCTCTTG	.	54	11	27	0	.	.	C	26755574	G	C	26755574	3	2	25	1	0	0	0	0	1	0	0	0	7965	1310	46	5	4701	5	ITPR2	12	26755574	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	154	26755574	107096321	73	4094			1	5		6	6	313	G		2.265622e-17
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	26755635	26755635	+	Nonsense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gcactggacttaaaatgtttGattcctaaaaggaacacaaa	17	10	7	7	0	0	1	0	1	0	0	1	3	1	3	1	2	1	2	1	2	6	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon27	c.C3467G	p.S1156X	ATGTTTGATTCCT	.	32	9	21	0	.	.	C	26755635	G	C	26755635	4	2	25	1	0	0	0	0	0	1	0	0	7965	1294	45	5	4762	5	ITPR2	12	26755635	Nonsense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	61	26755635	107096260	74	4095			1	5		6	6	313	G		2.265622e-17
ADAMTS20	80070	hgsc.bcm.edu	37	chr12	43925997	43925997	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcctttaaatgttcccGtctgaaaataaaggaaacaa	15	12	6	8	1	2	1	0	1	2	0	4	2	4	2	2	1	1	1	2	1	8	4	rs141043529	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ADAMTS20_ENST00000389420,NS,carcinoma,0,6	ADAMTS20_ENST00000389420	NM_025003	exon3	c.C455A	p.T152K	GTTCCCGTCTGAA	.	45	2	37	0	.	0	T	43925997	G	T	43925997	3	4	25	1	0	0	0	0	1	0	0	0	265	1159	40	2	5424	2	ADAMTS20	12	43925997	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	17170362	43925997	89925898	75	4096											
STAT6	6778	bcgsc.ca	37	chr12	57499001	57499001	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtcaccatgtcggcccTgaccagcggaggcttggctg	5	9	13	14	2	2	1	1	1	1	0	3	2	2	2	3	4	1	2	3	4	0	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	STAT6	NM_001178079	exon9	c.A934T	p.R312W	CGGCCCTGACCAG	.	48	4	59	0	.	69	A	57499001	A	A	57499001	3	1	25	1	0	0	0	0	1	0	0	0	15326	1579	55	5	1665	5	STAT6	12	57499001	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	13573004	57499001	76352894	76	4097											
NAV3	89795	hgsc.bcm.edu	37	chr12	78520946	78520946	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gggttttctttgttttaacaGcatgcagcttgacagaaata	11	15	9	6	0	1	2	0	1	1	1	1	2	1	2	0	1	4	5	0	1	3	7	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NAV3,NS,carcinoma,0,1	NAV3	NM_014903	exon17	c.4239-1G>T	.	TTAACAGCATGCA	.	53	3	38	0	.	0	T	78520946	G	T	78520946	5	4	25	1	0	0	0	0	0	0	1	0	10233	985	34	3	4304	3	NAV3	12	78520946	Splice_Site	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	21021945	78520946	55330949	77	4098											
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	107371419	107371420	+	Frame_Shift_Del	DEL	CT	CT	-																															ttgccaaaattagcttcaaaCtctttttttgatccatttag																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001033050	exon3	c.1074_1075del	p.358_359del	TTCAAACTCTTTT	.	42	15	52	0	.	.	-	107371420	CT	-	107371419	7	5	25	1	0	1	0	1	0	0	0	0	9969	564	20	0	87	0	MTERFD3	12	107371419	Frame_Shift_Del	DEL	CT	TCGA-W6-AA0S-01A-11D-A417-09	28850473	107371419	26480476	78	4099											
PCDH17	27253	hgsc.bcm.edu	37	chr13	58207258	58207258	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cggcgacggcaccaagttccCagaactggtcatccagaagg	11	5	12	13	3	1	2	1	0	0	2	3	3	3	2	3	4	1	2	3	4	3	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PCDH17,colon,carcinoma,0,1	PCDH17	NM_001040429	exon1	c.C578A	p.P193Q	AGTTCCCAGAACT	.	34	2	15	0	.	0	A	58207258	C	A	58207258	3	1	25	1	0	0	0	0	1	0	0	0	11559	594	21	3	580	3	PCDH17	13	58207258	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		58207258	56962620	79	4100											
ATP11A	23250	hgsc.bcm.edu	37	chr13	113530136	113530136	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actacgtgttcatccagatgCtgtccagcgggcccgcctgg	6	9	12	14	3	1	1	1	0	0	1	3	1	3	1	4	2	3	2	4	2	1	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_032189	exon28	c.C3208T	p.L1070L	CAGATGCTGTCCA	.	109	4	67	0	.	.	T	113530136	C	T	113530136	2	4	25	1	0	0	0	0	0	0	0	1	1118	796	28	3		3	ATP11A	13	113530136	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	55322878	113530136	1639742	80	4101											
POTEG	404785	bcgsc.ca	37	chr14	19553530	19553530	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctggtgcagggggagCggcaagagcaacgtgggcac	8	5	17	11	2	0	1	0	0	0	1	1	2	1	2	2	5	4	4	2	5	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	POTEG	NM_001005356	exon1	c.C114T	p.S38S	GGGGAGCGGCAAG	.	463	39	302	10	.	118	T	19553530	T	T	19553530	2	4	25	1	0	0	0	0	0	0	0	1	12313	767	27	1		1	POTEG	14	19553530	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09		19553530	87796010	81	4102											
ADCY4	196883	ucsc.edu;bcgsc.ca	37	chr14	24787682	24787682	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgttcaggaagtaggtGcagagctgccctttgccttt	6	14	12	9	0	2	1	1	0	1	1	2	2	2	2	2	2	4	4	2	2	2	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ADCY4,NS,carcinoma,-1,1	ADCY4	NM_139247	exon26	c.C3174T	p.C1058C	GTAGGTGCAGAGC	.	40	4	30	0	.	86	A	24787682	G	A	24787682	2	1	25	1	0	0	0	0	0	0	0	1	295	1311	46	3		3	ADCY4	14	24787682	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	5234152	24787682	82561858	82	4103											
INO80	54617	hgsc.bcm.edu	37	chr15	41297827	41297827	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaccatgtctcgcctctccGagatcttggatgagccatca	9	10	8	14	2	4	2	1	1	3	1	6	4	4	3	4	1	2	0	4	1	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	INOC1,face,carcinoma,0,2	INOC1	NM_017553	exon28	c.C3461A	p.S1154X	CTCTCCGAGATCT	.	45	2	18	0	.	0	T	41297827	G	T	41297827	4	4	25	1	0	0	0	0	0	1	0	0	7790	1059	37	2	1245	2	INO80	15	41297827	Nonsense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		41297827	61233565	83	4104											
PLA2G4E	123745	hgsc.bcm.edu	37	chr15	42292455	42292455	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgttctcaaaggattcGttcaccatcaccaggaggtc	9	11	11	10	1	3	0	3	0	1	0	6	2	3	2	2	4	0	2	2	4	1	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PLA2G4E,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PLA2G4E	NM_001206670	exon8	c.C699T	p.N233N	GGATTCGTTCACC	.	46	3	29	0	.	0	A	42292455	G	A	42292455	2	1	25	1	0	0	0	0	0	0	0	1	12053	1136	40	1		1	PLA2G4E	15	42292455	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	994628	42292455	60238937	84	4105											
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43818646	43818646	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	aaacatctcctaccagagagGagccggctggagaacagaaa	16	4	11	10	1	1	3	0	0	1	3	2	6	1	4	3	3	4	1	3	3	4	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002373	exon4	c.G4975A	p.E1659K	AGAGAGGAGCCGG	.	83	24	47	0	.	.	A	43818646	G	A	43818646	3	1	25	1	0	0	0	0	1	0	0	0	9277	1175	41	3	4977	3	MAP1A	15	43818646	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	1526191	43818646	58712746	85	4106											
SPATA5L1	79029	hgsc.bcm.edu	37	chr15	45697670	45697670	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgacagcactctgtagggaGgctgccatgcatgccctcct	7	9	11	14	0	1	1	0	1	1	0	2	2	2	2	3	2	4	4	3	2	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SPATA5L1,NS,carcinoma,0,1	SPATA5L1	NM_024063	exon2	c.G1242T	p.E414D	TAGGGAGGCTGCC	.	49	2	31	0	.	0	T	45697670	G	T	45697670	3	4	25	1	0	0	0	0	1	0	0	0	15068	991	35	3	1248	3	SPATA5L1	15	45697670	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	1879024	45697670	56833722	86	4107											
SEMA6D	80031	hgsc.bcm.edu	37	chr15	48056069	48056069	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtattcccgcgtggcccGcatatgtaaaaacgacatgg	10	10	11	10	4	0	0	0	0	0	0	1	1	1	0	2	2	1	3	2	2	5	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SEMA6D_ENST00000558014,NS,carcinoma,0,2	SEMA6D_ENST00000558014	NM_153617	exon10	c.G770A	p.R257H	TGGCCCGCATATG	.	54	3	29	0	.	0	A	48056069	G	A	48056069	3	1	25	1	0	0	0	0	1	0	0	0	14096	1087	38	1	804	1	SEMA6D	15	48056069	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	2358399	48056069	54475323	87	4108											
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52252121	52252121	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctctacactgagaaagttggGcagtttaacaaaatataagt	16	11	8	6	0	1	1	0	1	1	1	1	2	1	1	0	1	2	3	0	1	7	6	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138792	exon5	c.C1135T	p.P379S	AGTTGGGCAGTTT	.	87	28	48	0	.	.	A	52252121	G	A	52252121	3	1	25	1	0	0	0	0	1	0	0	0	8765	1203	42	3	897	3	LEO1	15	52252121	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	4196052	52252121	50279271	88	4109											
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65312553	65312553	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	accgtaagtcgccccctccaTtggctgctgccttccattgc	5	11	8	17	2	0	0	0	0	0	0	3	0	2	0	6	1	3	3	6	1	1	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_139242	exon5	c.A703G	p.M235V	CCTCCATTGGCTG	.	21	9	25	0	.	.	C	65312553	T	C	65312553	3	2	25	1	0	0	0	0	1	0	0	0	9972	1493	52	4	486	4	MTFMT	15	65312553	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	13060432	65312553	37218839	89	4110											
SLC28A1	9154	hgsc.bcm.edu	37	chr15	85438311	85438311	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ggccaaagctgaggaggtttCtcaagcctcagggccatccc	9	7	12	13	0	2	1	2	1	1	0	4	2	3	2	4	4	2	2	4	4	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,4	.	NM_201651	exon6	c.C418G	p.L140V	AGGTTTCTCAAGC	.	69	2	42	0	.	118	G	85438311	C	G	85438311	3	3	25	1	0	0	0	0	1	0	0	0	14586	913	32	5	432	5	SLC28A1	15	85438311	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	20125758	85438311	17093081	90	4111											
AKAP13	11214	hgsc.bcm.edu	37	chr15	86284600	86284600	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaggagctccagcagaagaaGggcacataccagtatgacct	14	5	12	10	0	0	3	0	1	0	2	1	5	1	4	3	2	3	4	3	2	4	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	AKAP13,brain,glioma,0,1	AKAP13	NM_006738	exon35	c.G7944T	p.K2648N	GAAGAAGGGCACA	.	46	2	35	0	.	0	T	86284600	G	T	86284600	3	4	25	1	0	0	0	0	1	0	0	0	446	991	35	3	8136	3	AKAP13	15	86284600	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	846289	86284600	16246792	91	4112											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggtcgccatgggcgtgcCtgccaatggtgatgggcttg	4	10	16	11	2	0	1	0	1	0	0	1	1	0	1	4	4	2	1	4	4	1	1	rs121913503		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	IDH2,NS,haematopoietic_neoplasm,0,179	IDH2	NM_002168	exon4	c.G515A	p.R172K	GCGTGCCTGCCAA	.	39	11	37	0	.	0	T	90631838	C	T	90631838	3	4	25	1	0	0	0	0	1	0	0	0	7539	681	24	3	875	3	IDH2	15	90631838	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	4347238	90631838	11899554	92	4113											
SMG1	23049	broad.mit.edu	37	chr16	18882689	18882690	+	Missense_Mutation	DNP	TG	TG	CA																															aaaaaacagagtcttactgtTggctaaaaggcctttgcaaa																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	TG	TG						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	SMG1	NM_015092	exon16	c.C2298T	p.N767D	ACTGTTGGCTAAA	.	277	12	177	0	.	401	CA	18882690	TG	CA	18882689	3	2	25	1	0	0	0	0	1	0	0	0	14849	1812	63	4	8878	4	SMG1	16	18882689	Missense_Mutation	DNP	TG	TCGA-W6-AA0S-01A-11D-A417-09		18882689	71472064	93	4114											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30749940	30749940	+	Frame_Shift_Del	DEL	G	G	-																															acctgctgtgaaacgtcggaGggggaggccccccaagaaga																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_006662	exon34	c.8578delA	p.R2860fs	GTCGGAGGGGGAG	.	65	17	39	0	.	.	-	30749940	G	-	30749940	7	5	25	1	0	1	0	1	0	0	0	0	15191	1000	35	0	8705	0	SRCAP	16	30749940	Frame_Shift_Del	DEL	G	TCGA-W6-AA0S-01A-11D-A417-09	11867251	30749940	59604813	94	4115											
HSF4	3299	hgsc.bcm.edu	37	chr16	67203243	67203243	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaaggggttaaattctcCaagcccaggtaatggttgtg	10	11	13	7	0	2	0	1	0	1	0	3	0	2	0	2	5	1	3	2	5	5	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001040667	exon14	c.C1316A	p.P439Q	ATTCTCCAAGCCC	.	77	4	24	0	.	.	A	67203243	C	A	67203243	3	1	25	1	0	0	0	0	1	0	0	0	7439	594	21	3	1376	3	HSF4	16	67203243	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	36453303	67203243	23151510	95	4116											
ZCCHC14	23174	hgsc.bcm.edu	37	chr16	87443922	87443922	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agactttctgctggaggggcGtatttcaacctaaaagtacc	11	11	10	9	1	2	1	1	0	1	1	2	2	2	2	2	3	3	3	2	3	5	5	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_015144	exon13	c.C2814T	p.Y938Y	AGGGGCGTATTTC	.	98	4	67	0	.	.	A	87443922	G	A	87443922	2	1	25	1	0	0	0	0	0	0	0	1	17642	1140	40	1		1	ZCCHC14	16	87443922	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	20240679	87443922	2910831	96	4117											
MVD	4597	hgsc.bcm.edu	37	chr16	88721779	88721779	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agtctcgctcccggatgcagCgggccatctccgccatgcgc	5	7	12	17	5	2	0	0	0	2	0	5	1	3	1	4	2	3	2	4	2	0	0	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	MVD,NS,carcinoma,0,1	MVD	NM_002461	exon7	c.G725A	p.R242H	ATGCAGCGGGCCA	.	48	3	23	0	.	0	T	88721779	C	T	88721779	3	4	25	1	0	0	0	0	1	0	0	0	10042	768	27	1	493	1	MVD	16	88721779	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	1277857	88721779	1632974	97	4118											
PABPN1L	390748	broad.mit.edu	37	chr16	88930645	88930645	+	Splice_Site	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccacaggcacccactcacCggttctgcccttgtggtctg	5	9	9	18	1	3	0	1	0	2	0	3	0	3	0	5	3	1	2	5	3	0	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	PABPN1L	NM_001080487	exon6	c.G797A	p.R266Q	ACTCACCGGTTCT	.	35	3	19	0	.	25	T	88930645	C	T	88930645	5	4	25	1	0	0	0	0	0	0	1	0	11416	666	23	1	79	1	PABPN1L	16	88930645	Splice_Site	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	208866	88930645	1424108	98	4119											
DNAH2	146754	hgsc.bcm.edu	37	chr17	7630469	7630469	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttcccgagctgcgctGacaggactggcggatgcagt	6	10	13	12	3	0	1	0	1	0	0	2	4	2	3	2	3	3	3	2	3	0	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_020877	exon3	c.G258T	p.L86L	TGCGCTGACAGGA	.	32	3	37	0	.	.	T	7630469	G	T	7630469	2	4	25	1	0	0	0	0	0	0	0	1	4630	1277	45	3		3	DNAH2	17	7630469	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		7630469	73564741	99	4120											
KDM6B	23135	hgsc.bcm.edu	37	chr17	7750177	7750177	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gccactgcctccaccaccatTaccaccaccaccaccaccac	11	4	2	24	0	0	0	0	0	0	0	1	0	1	0	11	0	2	0	11	0	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,2	.	NM_001080424	exon9	c.T752C	p.L251S	CACCATTACCACC	.	15	2	13	1	.	95	C	7750177	T	C	7750177	3	2	25	1	0	0	0	0	1	0	0	0	8181	1764	61	4	774	4	KDM6B	17	7750177	Missense_Mutation	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09	119708	7750177	73445033	100	4121											
TRAF4	9618	hgsc.bcm.edu;broad.mit.edu	37	chr17	27071215	27071215	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcccatgcgcgagcctGtgcaggtttccacctgcggc	6	7	14	14	3	0	0	0	0	0	0	1	2	1	1	4	3	5	2	4	3	1	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004295	exon1	c.G85A	p.V29M	GAGCCTGTGCAGG	.	11	6	16	0	.	.	A	27071215	G	A	27071215	3	1	25	1	0	0	0	0	1	0	0	0	16504	1377	48	3	87	3	TRAF4	17	27071215	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	19321038	27071215	54123995	101	4122											
LIG3	3980	hgsc.bcm.edu	37	chr17	33310393	33310393	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccgaattggcaaagtggtGcccaatcccttctcagagtc	9	10	10	12	1	1	1	1	0	1	1	4	2	2	1	3	2	2	1	3	2	3	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_013975	exon2	c.G369T	p.V123V	AGTGGTGCCCAAT	.	87	4	45	0	.	.	T	33310393	G	T	33310393	2	4	25	1	0	0	0	0	0	0	0	1	8822	1306	46	3		3	LIG3	17	33310393	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	6239178	33310393	47884817	102	4123											
GPR179	440435	hgsc.bcm.edu	37	chr17	36495366	36495366	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggccacttgcacactgattGatgtccacactctggagatc	9	10	10	12	0	1	3	0	2	1	1	3	4	2	3	2	2	1	1	2	2	0	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GPR179,rectum,carcinoma,-1,1	GPR179	NM_001004334	exon2	c.C837A	p.I279I	CTGATTGATGTCC	.	45	2	34	0	.	-1	T	36495366	G	T	36495366	2	4	25	1	0	0	0	0	0	0	0	1	6714	1280	45	3		3	GPR179	17	36495366	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	3184973	36495366	44699844	103	4124											
NFE2L1	4779	hgsc.bcm.edu;broad.mit.edu	37	chr17	46136201	46136212	+	In_Frame_Del	DEL	CTTCTTCCTCTG	CTTCTTCCTCTG	-																															ttcttcctcctcctcttcctCttcttcctctgcttcttcct																								novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CTTCTTCCTCTG	CTTCTTCCTCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_003204	exon6	c.1516_1527del	p.506_509del	CTTCCTCTTCTTC	.	21	6	9	0	.	.	-	46136212	CTTCTTCCTCTG	-	46136201	7	5	25	1	0	1	0	1	0	0	0	0	10414	913	32	0	1535	0	NFE2L1	17	46136201	In_Frame_Del	DEL	CTTCTTCCTCTG	TCGA-W6-AA0S-01A-11D-A417-09	9640835	46136201	35059009	104	4125											
WFIKKN2	124857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	48913377	48913377	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctactgctcGgggtgcccccgcgaagcctg	3	9	14	15	3	0	0	0	0	0	0	1	1	0	0	3	2	8	5	3	2	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_175575	exon1	c.G79T	p.G27W	CTGCTCGGGGTGC	.	70	23	41	0	.	.	T	48913377	G	T	48913377	3	4	25	1	0	0	0	0	1	0	0	0	17419	1116	39	2	81	2	WFIKKN2	17	48913377	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	2777176	48913377	32281833	105	4126											
KIF2B	84643	hgsc.bcm.edu	37	chr17	51902198	51902198	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ttgaagaggttgaaacattaCccactctgttagggaaggat	13	11	11	6	0	1	3	0	2	1	1	1	5	1	5	1	3	2	2	1	3	5	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	KIF2B,NS,carcinoma,0,1	KIF2B	NM_032559	exon1	c.C1804T	p.P602S	ACATTACCCACTC	.	33	2	23	0	.	0	T	51902198	C	T	51902198	3	4	25	1	0	0	0	0	1	0	0	0	8340	507	18	3	1806	3	KIF2B	17	51902198	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	2988821	51902198	29293012	106	4127											
MAP3K3	4215	hgsc.bcm.edu;bcgsc.ca	37	chr17	61767703	61767703	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggtctatttgtgctatgaCgtggacacgggacgtgaact	9	11	14	7	3	1	2	0	2	1	0	1	4	1	4	0	3	2	1	0	3	3	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_203351	exon13	c.C1236T	p.D412D	CTATGACGTGGAC	.	47	4	31	0	.	.	T	61767703	C	T	61767703	2	4	25	1	0	0	0	0	0	0	0	1	9301	535	19	1		1	MAP3K3	17	61767703	Silent	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	9865505	61767703	19427507	107	4128											
DDX5	1655	hgsc.bcm.edu	37	chr17	62496866	62496866	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagttagggtagtcataattGatgacaaatttcacatcttc	13	14	8	6	0	3	2	2	2	1	0	4	3	3	2	0	1	0	2	0	1	4	6	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DDX5_ENST00000540698,NS,carcinoma,0,2	DDX5_ENST00000540698	NM_004396	exon12	c.C1242A	p.I414I	ATAATTGATGACA	.	38	2	29	0	.	0	T	62496866	G	T	62496866	2	4	25	1	0	0	0	0	0	0	0	1	4390	1280	45	3		3	DDX5	17	62496866	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	729163	62496866	18698344	108	4129											
DENND1C	79958	hgsc.bcm.edu	37	chr19	6476920	6476920	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctctcggccaggagcgccGcgaacagccccacgatgttc	7	7	11	16	5	1	0	0	0	1	0	4	3	1	1	4	2	3	1	4	2	1	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DENND1C_ENST00000381480,colon,carcinoma,0,2	DENND1C_ENST00000381480	NM_024898	exon10	c.C626T	p.A209V	AGCGCCGCGAACA	.	42	2	31	0	.	0	A	6476920	G	A	6476920	3	1	25	1	0	0	0	0	1	0	0	0	4456	1087	38	1	1835	1	DENND1C	19	6476920	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		6476920	52652063	109	4130											
RPS28	6234	hgsc.bcm.edu	37	chr19	8386428	8386428	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgccatcatggacaccagccGtgtgcagcctatcaagctgg	9	7	11	14	2	2	0	2	0	0	0	2	1	2	1	4	2	4	2	4	2	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001031	exon1	c.G14A	p.R5H	CCAGCCGTGTGCA	.	83	4	58	0	.	.	A	8386428	G	A	8386428	3	1	25	1	0	0	0	0	1	0	0	0	13693	1145	40	1	16	1	RPS28	19	8386428	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	1909508	8386428	50742555	110	4131											
CACNA1A	773	hgsc.bcm.edu	37	chr19	13318673	13318690	+	In_Frame_Del	DEL	CTGCTGCTGCTGCTGCTG	CTGCTGCTGCTGCTGCTG	-																															cggcccggcctggccaccgcCtgctgctgctgctgctgctg																								rs16054	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CTGCTGCTGCTGCTGCTG	CTGCTGCTGCTGCTGCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001127222	exon47	c.6959_6976del	p.2320_2326del	CACCGCCTGCTGC	.	10	3	8	0	.	.	-	13318690	CTGCTGCTGCTGCTGCTG	-	13318673	7	5	25	1	0	1	0	1	0	0	0	0	2556	680	24	0	549	0	CACNA1A	19	13318673	In_Frame_Del	DEL	CTGCTGCTGCTGCTGCTG	TCGA-W6-AA0S-01A-11D-A417-09	4932245	13318673	45810310	111	4132											
KIAA1683	80726	broad.mit.edu	37	chr19	18377943	18377943	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcttgttgaagcgccgccagGcctcctggatggccttggcc	4	10	13	14	2	1	1	0	1	1	0	2	2	2	2	6	4	1	1	6	4	1	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	KIAA1683	NM_001145304	exon3	c.C407A	p.A136D	CGCCAGGCCTCCT	.	36	5	20	0	.	190	T	18377943	G	T	18377943	3	4	25	1	0	0	0	0	1	0	0	0	8293	1203	42	3	3704	3	KIAA1683	19	18377943	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	5059270	18377943	40751040	112	4133											
BAGE2	7179	bcgsc.ca	37	chr21	11021153	11021153	+	RNA	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgctagaaaacaacacaaccGtagtgtgcatagagttttct	14	11	8	8	1	1	2	0	0	1	2	1	2	1	2	1	0	5	4	1	0	7	5	rs71286780	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	ACAACCGTAGTGT	.	337	32	252	2	GTAGTGT|0.500;ATATCGA|0.500	.	A	11021153	A	A	11021153	1	1	25	0	1	0	0	0	0	0	0	0	1290	1160	40	1		1	BAGE2	21	11021153	RNA	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09		11021153	37108742	113	4134											
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	11049582	11049582	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	agaactgatctaagaggtctCccgggctgtcgcacactgca	10	8	11	12	2	2	3	0	1	2	2	4	3	2	3	1	2	2	3	1	2	2	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_182481	exon4	c.G319A	p.E107K	AGGTCTCCCGGGC	.	147	8	114	0	.	.	T	11049582	C	T	11049582	3	4	25	1	0	0	0	0	1	0	0	0	1291	864	30	3	14	3	BAGE3	21	11049582	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	28429	11049582	37080313	114	4135											
BAGE	85319	broad.mit.edu	37	chr21	11078137	11078137	+	RNA	DEL	C	C	-																															actaaaaatacaaaaattagCcaggcgtggtggcacgcacc																								rs111912474		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AATTAGCCAGGCG	.	9	4	12	0	C|0.500;-|0.500	.	-	11078137	C	-	11078137	6	5	25	0	1	1	0	1	0	0	0	0	1289	754	26	0		0	BAGE	21	11078137	RNA	DEL	C	TCGA-W6-AA0S-01A-11D-A417-09	28555	11078137	37051758	115	4136											
SYNJ1	8867	broad.mit.edu	37	chr21	34045776	34045776	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaggttccgacacatactcGaattttcttaggctttgaat	10	14	7	10	2	1	1	0	1	1	0	3	3	2	1	2	2	1	2	2	2	4	6	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SYNJ1,colon,carcinoma,0,2	SYNJ1	NM_203446	exon14	c.C1717A	p.R573R	ATACTCGAATTTT	.	38	3	42	0	.	253	T	34045776	G	T	34045776	2	4	25	1	0	0	0	0	0	0	0	1	15509	1066	37	2		2	SYNJ1	21	34045776	Silent	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	22967639	34045776	14084119	116	4137											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30064437	30064437	+	Splice_Site	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaggctagaaagcaggTgagcacaaccttgttttaac	14	8	12	7	0	0	3	0	1	0	2	0	4	0	3	1	3	4	4	1	3	5	4	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_016418	exon10	c.999+2T>G	.	AGCAGGTGAGCAC	.	25	6	41	0	.	.	G	30064437	T	G	30064437	5	3	25	1	0	0	0	0	0	0	1	0	10404	1710	59	4	1039	4	NF2	22	30064437	Splice_Site	SNP	T	TCGA-W6-AA0S-01A-11D-A417-09		30064437	21240129	117	4138											
HMGXB4	10042	bcgsc.ca	37	chr22	35683427	35683427	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagcatccagctcagaaGgttccatgaaagtcaaaggt	15	7	11	8	0	2	2	2	1	0	1	4	3	4	3	2	3	2	3	2	3	4	1	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	HMGXB4	NM_001003681	exon8	c.G1450T	p.G484C	TCAGAAGGTTCCA	.	18	3	25	0	.	52	T	35683427	T	T	35683427	3	4	25	1	0	0	0	0	1	0	0	0	7280	1000	35	3	1476	3	HMGXB4	22	35683427	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	5618990	35683427	15621139	118	4139											
PPARA	5465	hgsc.bcm.edu	37	chr22	46594338	46594338	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cactcgaggccggcgatctaGagagcccgttatctgaagag	10	7	13	11	4	2	3	0	1	2	2	3	6	2	3	2	2	1	1	2	2	3	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PPARA,mouth,carcinoma,0,1	PPARA	NM_001001928	exon3	c.G58T	p.E20X	GATCTAGAGAGCC	.	40	2	46	0	.	0	T	46594338	G	T	46594338	4	4	25	1	0	0	0	0	0	1	0	0	12342	943	33	3	60	3	PPARA	22	46594338	Nonsense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	10910911	46594338	4710228	119	4140											
ZNF157	7712	broad.mit.edu	37	chrX	47272699	47272699	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaacatcagaggatgcattcAggagagaaaccctacgaatg	16	6	11	8	1	2	2	2	0	0	2	2	7	2	4	1	2	4	1	1	2	4	2	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	ZNF157	NM_003446	exon4	c.A1227G	p.S409S	GCATTCAGGAGAG	.	58	3	32	0	.	46	G	47272699	A	G	47272699	2	3	25	1	0	0	0	0	0	0	0	1	17795	175	7	4		4	ZNF157	23	47272699	Silent	SNP	A	TCGA-W6-AA0S-01A-11D-A417-09		47272699	107997861	120	4141											
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	49851058	49851058	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcagcattcactctacGctccatcaatccatttggga	9	11	9	12	1	3	0	2	0	1	0	5	1	5	1	2	3	2	3	2	3	2	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001127898	exon11	c.G1088A	p.R363H	CTCTACGCTCCAT	.	63	28	30	0	.	.	A	49851058	G	A	49851058	3	1	25	1	0	0	0	0	1	0	0	0	3489	1087	38	1	1122	1	CLCN5	23	49851058	Missense_Mutation	SNP	G	TCGA-W6-AA0S-01A-11D-A417-09	2578359	49851058	105419502	121	4142											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50085219	50085219	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtcctttgagatgaccCatgagaccctgtacttggca	9	11	11	10	0	0	3	0	3	0	2	1	5	1	3	3	2	1	2	3	2	1	3	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_033031	exon8	c.C3535T	p.H1179Y	ATGACCCATGAGA	.	49	15	37	0	.	.	T	50085219	C	T	50085219	3	4	25	1	0	0	0	0	1	0	0	0	2936	594	21	3	3561	3	CCNB3	23	50085219	Missense_Mutation	SNP	C	TCGA-W6-AA0S-01A-11D-A417-09	234161	50085219	105185341	122	4143											
CHD5	26038	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	6194805	6194805	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gccacagggaagaggtagggGtggttgcagcactttttcag	9	9	16	7	0	1	1	1	0	0	1	1	2	1	2	1	5	2	4	1	5	2	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015557	exon19	c.C2985A	p.H995Q	GTAGGGGTGGTTG	.	40	5	72	0	.	.	T	6194805	G	T	6194805	3	4	26	1	0	0	0	0	1	0	0	0	3350	1252	44	3	2971	3	CHD5	1	6194805	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		6194805	243055816	1	4144											
CELA2B	51032	hgsc.bcm.edu	37	chr1	15802636	15802636	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acaccatgattaggaccctgCtgctgtccactttggtggct	7	12	10	12	0	0	1	0	1	0	0	1	2	1	2	3	3	2	3	3	3	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CELA2B,NS,carcinoma,0,1	CELA2B	NM_015849	exon1	c.C16T	p.L6L	ACCCTGCTGCTGT	.	39	2	69	0	.	0	T	15802636	C	T	15802636	2	4	26	1	0	0	0	0	0	0	0	1	3234	796	28	3		3	CELA2B	1	15802636	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	9607831	15802636	233447985	2	4145											
ATP13A2	23400	broad.mit.edu	37	chr1	17316709	17316709	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tcagggtgggtggcgtggacGatgatcagatgctcctgggg	6	9	19	7	2	2	2	2	1	0	1	3	4	3	3	1	6	1	1	1	6	0	0	rs148374514		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	ATP13A2	NM_022089	exon21	c.C2325T	p.I775I	GTGGACGATGATC	.	34	3	60	0	G|1.000;A|0.000	85	A	17316709	G	A	17316709	2	1	26	1	0	0	0	0	0	0	0	1	1123	1048	37	1		1	ATP13A2	1	17316709	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	1514073	17316709	231933912	3	4146											
MYOM3	127294	hgsc.bcm.edu	37	chr1	24384096	24384096	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggggtggggtctcctgagaCgatgcaagtcaagcacaggg	10	6	17	8	1	2	1	1	1	1	1	3	3	2	1	1	5	2	2	1	5	2	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MYOM3,NS,carcinoma,0,2	MYOM3	NM_152372	exon37	c.G4072A	p.V1358I	CTGAGACGATGCA	.	37	2	66	0	.	0	T	24384096	C	T	24384096	3	4	26	1	0	0	0	0	1	0	0	0	10141	536	19	1	245	1	MYOM3	1	24384096	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	7067387	24384096	224866525	4	4147											
ARID1A	8289	hgsc.bcm.edu	37	chr1	27100375	27100375	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccagcagactacaatgtatCaacagcaacagcaggtgagg	15	5	11	10	0	1	2	1	1	0	1	1	2	1	2	1	2	6	4	1	2	5	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ARID1A,bladder,carcinoma,0,1	ARID1A	NM_006015	exon17	c.C4087A	p.Q1363K	ATGTATCAACAGC	.	29	2	39	0	.	0	A	27100375	C	A	27100375	3	1	26	1	0	0	0	0	1	0	0	0	910	827	29	3	4153	3	ARID1A	1	27100375	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	2716279	27100375	222150246	5	4148											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27101387	27101394	+	Frame_Shift_Del	DEL	CCCTCTGC	CCCTCTGC	-																															cacgccagcccccatatggtCcctctgcccctgtgcccccc																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	CCCTCTGC	CCCTCTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006015	exon18	c.4668_4675del	p.1556_1559del	TATGGTCCCTCTG	.	67	12	79	0	.	.	-	27101394	CCCTCTGC	-	27101387	7	5	26	1	0	1	0	1	0	0	0	0	910	855	30	0	4739	0	ARID1A	1	27101387	Frame_Shift_Del	DEL	CCCTCTGC	TCGA-WD-A7RX-01A-12D-A417-09	1012	27101387	222149234	6	4149											
STK40	83931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36819995	36819995	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaccatgttccccagcttcAggtctctgtgcacgatattt	7	13	8	13	1	2	0	1	0	1	0	4	1	3	0	3	1	2	4	3	1	1	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	STK40	NM_032017	exon7	c.T593G	p.L198R	AGCTTCAGGTCTC	.	63	16	75	1	.	53	C	36819995	A	C	36819995	3	2	26	1	0	0	0	0	1	0	0	0	15363	188	7	4	738	4	STK40	1	36819995	Missense_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	9718608	36819995	212430626	7	4150											
NSUN4	387338	hgsc.bcm.edu	37	chr1	46810541	46810541	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttgacatgacttacagtgtGcagtttggagatctttggcc	8	15	11	7	0	1	3	0	2	1	1	1	4	1	3	1	2	2	2	1	2	1	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_199044	exon2	c.G162A	p.V54V	CAGTGTGCAGTTT	.	67	4	61	0	.	.	A	46810541	G	A	46810541	2	1	26	1	0	0	0	0	0	0	0	1	10728	1306	46	3		3	NSUN4	1	46810541	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	9990546	46810541	202440080	8	4151											
RNPC3	55599	broad.mit.edu	37	chr1	104084013	104084013	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agcaaatcttcagcccaaaaGacctaaaacaataaagcagc	20	5	5	11	0	2	1	1	0	1	1	2	1	2	1	2	0	5	2	2	0	8	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	RNPC3	NM_017619	exon8	c.G809C	p.R270T	CCAAAAGACCTAA	.	103	3	133	0	.	20	C	104084013	G	C	104084013	3	2	26	1	0	0	0	0	1	0	0	0	13560	942	33	5		5	RNPC3	1	104084013	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	57273472	104084013	145166608	9	4152											
AMY2A	279	hgsc.bcm.edu;broad.mit.edu	37	chr1	104160125	104160125	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtattccccaaatacAcaacaaggacggacatctat	15	8	6	12	1	2	0	1	0	1	0	3	2	3	2	2	2	2	2	2	2	6	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000699	exon1	c.A63T	p.T21T	AAATACACAACAA	.	252	12	325	0	.	.	T	104160125	A	T	104160125	2	4	26	1	0	0	0	0	0	0	0	1	590	146	6	5		5	AMY2A	1	104160125	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	76112	104160125	145090496	10	4153											
KIAA1324	57535	hgsc.bcm.edu	37	chr1	109714602	109714602	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	accgttaacttcgaatactaCtatccagactccagcatcat	13	11	4	13	2	1	1	1	0	0	1	4	2	3	1	3	0	4	2	3	0	5	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_020775	exon4	c.C582T	p.Y194Y	ATACTACTATCCA	.	58	4	63	0	.	.	T	109714602	C	T	109714602	2	4	26	1	0	0	0	0	0	0	0	1	8265	576	20	3		3	KIAA1324	1	109714602	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	5554477	109714602	139536019	11	4154											
TCHH	7062	hgsc.bcm.edu	37	chr1	152084531	152084531	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctcgcgcctcagctGctgctcgcgcctcagctgct	2	10	11	18	4	2	0	2	0	0	0	4	0	2	0	2	0	7	7	2	0	0	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_007113	exon3	c.C1162G	p.Q388E	TCAGCTGCTGCTC	.	32	6	30	0	.	.	C	152084531	G	C	152084531	3	2	26	1	0	0	0	0	1	0	0	0	15760	1328	46	5	4673	5	TCHH	1	152084531	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	42369929	152084531	97166090	12	4155											
YY1AP1	55249	hgsc.bcm.edu	37	chr1	155629657	155629657	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcactgtttatcgactggtgGaggccctgggctatgttcca	6	12	13	10	1	0	0	0	0	0	0	2	2	1	1	2	4	0	4	2	4	2	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001198903	exon10	c.C2458A	p.P820T	CTGGTGGAGGCCC	.	72	4	63	0	.	.	T	155629657	G	T	155629657	3	4	26	1	0	0	0	0	1	0	0	0	17568	1174	41	3	212	3	YY1AP1	1	155629657	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	3545126	155629657	93620964	13	4156											
SLAMF8	56833	hgsc.bcm.edu	37	chr1	159799757	159799757	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctggcttccaagtccgtgagGctatctggcgatctctctgg	5	12	12	12	2	3	1	0	1	3	0	6	2	5	1	2	4	0	2	2	4	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SLAMF8,NS,carcinoma,0,1	SLAMF8	NM_020125	exon2	c.G142T	p.A48S	CGTGAGGCTATCT	.	38	2	39	0	.	0	T	159799757	G	T	159799757	3	4	26	1	0	0	0	0	1	0	0	0	14425	1203	42	3	148	3	SLAMF8	1	159799757	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	4170100	159799757	89450864	14	4157											
FAM5C	0	broad.mit.edu	37	chr1	190203603	190203603	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccagtccgtgtttctGttacctggcaaacaaaacat	12	10	9	10	1	1	0	0	0	1	0	2	2	2	1	3	2	3	3	3	2	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FAM5C	NM_199051	exon5	c.C623G	p.T208R	GTTTCTGTTACCT	.	94	3	94	0	.	343	C	190203603	G	C	190203603	3	2	26	1	0	0	0	0	1	0	0	0	5629	1377	48	5	1693	5	FAM5C	1	190203603	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	30403846	190203603	59047018	15	4158											
DTL	51514	hgsc.bcm.edu	37	chr1	212274368	212274368	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagaatccatctccacgaaGtccgtcatcccagacaccca	12	7	6	16	2	2	2	1	1	1	2	6	4	5	2	5	0	0	0	5	0	2	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	DTL,NS,carcinoma,0,1	DTL	NM_016448	exon14	c.G2036T	p.S679I	CACGAAGTCCGTC	.	68	3	83	0	.	0	T	212274368	G	T	212274368	3	4	26	1	0	0	0	0	1	0	0	0	4813	1029	36	3	2090	3	DTL	1	212274368	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	22070765	212274368	36976253	16	4159											
TRIM17	51127	bcgsc.ca	37	chr1	228602548	228602548	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cttggtcagcagccggttggGcagcaggttcctctgcgggg	4	9	17	11	2	2	0	1	0	1	0	3	0	3	0	2	6	4	5	2	6	0	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TRIM17	NM_001024940	exon2	c.C226T	p.P76S	GGTTGGGCAGCAG	.	89	5	93	0	.	66	A	228602548	A	A	228602548	3	1	26	1	0	0	0	0	1	0	0	0	16554	1203	42	3	1380	3	TRIM17	1	228602548	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	16328180	228602548	20648073	17	4160											
FMN2	56776	bcgsc.ca	37	chr1	240371688	240371688	+	Silent	SNP	A	T	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctccgccccctctacctggAgtgggaatacctcctccgcc	5	8	8	20	2	1	0	0	0	1	0	4	2	4	2	9	2	2	0	9	2	3	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FMN2,NS,carcinoma,+1,1	FMN2	NM_020066	exon5	c.A3576T	p.G1192G	ACCTGGAGTGGGA	.	148	10	151	6	.	451	T	240371688	T	T	240371688	2	4	26	1	0	0	0	0	0	0	0	1	5983	291	11	5		5	FMN2	1	240371688	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	11769140	240371688	8878933	18	4161											
MYT1L	23040	hgsc.bcm.edu	37	chr2	1890332	1890332	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgagttcttgggagctggtgGccagcatacttcgaatgctt	7	13	13	8	1	1	1	0	1	1	0	2	3	1	2	1	3	4	4	1	3	2	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015025	exon18	c.C2684A	p.A895D	CTGGTGGCCAGCA	.	57	4	80	0	.	.	T	1890332	G	T	1890332	3	4	26	1	0	0	0	0	1	0	0	0	10155	1203	42	3	902	3	MYT1L	2	1890332	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		1890332	241309041	19	4162											
MAP4K4	9448	hgsc.bcm.edu;bcgsc.ca	37	chr2	102480371	102480371	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgacccttctcccaaatttgCacaccaccatcttcgttctc	8	13	3	17	1	3	1	0	1	3	0	6	1	3	1	4	0	1	2	4	0	1	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001242560	exon16	c.C1700T	p.A567V	AATTTGCACACCA	.	57	4	64	0	.	.	T	102480371	C	T	102480371	3	4	26	1	0	0	0	0	1	0	0	0	9312	710	25	3	2021	3	MAP4K4	2	102480371	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	100590039	102480371	140719002	20	4163											
THSD7B	80731	hgsc.bcm.edu;bcgsc.ca	37	chr2	137988805	137988805	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcctggcactggctggggaaGgtgagtaacagaaaaggttt	11	9	15	6	0	0	2	0	1	0	1	1	3	1	3	1	6	1	4	1	6	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	p.G639C	.	.	GGGGAAGGTGAGT	.	88	4	114	0	.	.	T	137988805	G	T	137988805	3	4	26	1	0	0	0	0	1	0	0	0	15940	1014	35	3	1848	3	THSD7B	2	137988805	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	35508434	137988805	105210568	21	4164											
SCN2A	6326	hgsc.bcm.edu	37	chr2	166231393	166231393	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtgcaaagctctcattGagagcaatcaaactgccagg	13	8	11	9	0	2	2	2	2	1	1	3	3	2	2	1	1	5	3	1	1	3	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SCN2A_ENST00000375437,bladder,carcinoma,0,2	SCN2A_ENST00000375437	NM_001040143	exon21	c.G4171T	p.E1391X	CTCATTGAGAGCA	.	50	2	76	0	.	0	T	166231393	G	T	166231393	4	4	26	1	0	0	0	0	0	1	0	0	13970	1291	45	3	4349	3	SCN2A	2	166231393	Nonsense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	28242588	166231393	76967980	22	4165											
STK36	27148	hgsc.bcm.edu	37	chr2	219563551	219563551	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccagggtcctgtctcccaGccacttgtcctttatccaag	6	12	8	15	0	1	0	0	0	1	0	5	0	4	0	6	1	2	0	6	1	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	STK36,NS,carcinoma,0,1	STK36	NM_015690	exon26	c.G3284T	p.S1095I	CTCCCAGCCACTT	.	38	2	45	0	.	0	T	219563551	G	T	219563551	3	4	26	1	0	0	0	0	1	0	0	0	15358	971	34	3	3382	3	STK36	2	219563551	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	53332158	219563551	23635822	23	4166											
DAZL	1618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	16633636	16633636	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gacaagataccaccgtttgtAtgcttcggtccacagatttc	10	12	8	11	2	0	2	0	0	0	2	3	3	1	2	3	1	2	3	3	1	3	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001190811	exon10	c.T815C	p.I272T	GTTTGTATGCTTC	.	360	16	601	0	.	.	G	16633636	A	G	16633636	3	3	26	1	0	0	0	0	1	0	0	0	4270	449	16	4	140	4	DAZL	3	16633636	Missense_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09		16633636	181388794	24	4167											
PDCD6IP	10015	broad.mit.edu	37	chr3	33840300	33840300	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctggtgaagttcatccagcAgacttacccaagcggcgggg	9	7	14	11	2	1	2	1	1	0	1	2	2	2	2	2	4	3	3	2	4	3	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PDCD6IP	NM_013374	exon1	c.A80G	p.Q27R	TCCAGCAGACTTA	.	73	4	60	0	.	62	G	33840300	A	G	33840300	3	3	26	1	0	0	0	0	1	0	0	0	11671	188	7	4	82	4	PDCD6IP	3	33840300	Missense_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	17206664	33840300	164182130	25	4168											
RAD54L2	23132	bcgsc.ca	37	chr3	51697126	51697126	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggctacctcagtcactgccaGcaacccctccttcatgctca	8	9	6	18	0	4	0	4	0	0	0	5	0	5	0	5	1	5	3	5	1	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	RAD54L2	NM_015106	exon22	c.G4094A	p.S1365N	CTGCCAGCAACCC	.	15	3	34	0	.	94	A	51697126	A	A	51697126	3	1	26	1	0	0	0	0	1	0	0	0	13046	971	34	3	4176	3	RAD54L2	3	51697126	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	17856826	51697126	146325304	26	4169											
PROS1	5627	hgsc.bcm.edu	37	chr3	93605209	93605209	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagttcactttccactttccGagggaatcctgcaaagtata	11	12	8	10	1	1	0	1	0	0	0	4	3	4	1	3	1	1	3	3	1	4	5	rs370129669	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	PROS1,bladder,carcinoma,0,1	PROS1	NM_000313	exon11	c.C1294A	p.R432R	CTTTCCGAGGGAA	.	73	3	119	0	.	0	T	93605209	G	T	93605209	2	4	26	1	0	0	0	0	0	0	0	1	12610	1057	37	2		2	PROS1	3	93605209	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	41908083	93605209	104417221	27	4170											
DZIP3	9666	hgsc.bcm.edu	37	chr3	108344792	108344792	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttagtttattttggacgtgGtttactgcgatgtgctcaaa	8	18	10	5	2	1	0	1	0	0	0	1	2	1	1	0	2	3	3	0	2	4	8	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014648	exon7	c.G557T	p.G186V	GACGTGGTTTACT	.	95	4	142	0	.	.	T	108344792	G	T	108344792	3	4	26	1	0	0	0	0	1	0	0	0	4891	1261	44	3	579	3	DZIP3	3	108344792	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	14739583	108344792	89677638	28	4171											
TIGIT	201633	broad.mit.edu;bcgsc.ca	37	chr3	114014670	114014670	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tctgcatctatcacacctacCctgatgggacgtacactggg	9	10	9	13	1	3	1	1	1	2	0	3	2	3	2	2	2	3	2	2	2	3	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TIGIT	NM_173799	exon2	c.C340T	p.P114S	ACCTACCCTGATG	.	11	3	25	0	.	42	T	114014670	C	T	114014670	3	4	26	1	0	0	0	0	1	0	0	0	15962	623	22	3	346	3	TIGIT	3	114014670	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	5669878	114014670	84007760	29	4172											
CP	1356	hgsc.bcm.edu;bcgsc.ca	37	chr3	148896305	148896305	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctaagtaccaagattcattCtcatcaaaaactagaaacag	18	10	4	9	0	4	2	3	0	2	2	5	2	4	2	1	0	3	1	1	0	7	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000096	exon16	c.G2775T	p.E925D	TTCATTCTCATCA	.	82	4	77	0	.	.	A	148896305	C	A	148896305	3	1	26	1	0	0	0	0	1	0	0	0	3810	912	32	3	438	3	CP	3	148896305	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	34881635	148896305	49126125	30	4173											
TNIK	23043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	170928989	170928989	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccggtgatgagaatatttCttcaacatgttaatttcttg	10	18	7	6	1	3	2	1	2	2	1	4	3	4	2	1	1	1	1	1	1	4	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001161562	exon4	c.G222T	p.K74N	ATATTTCTTCAAC	.	119	27	122	0	.	.	A	170928989	C	A	170928989	3	1	26	1	0	0	0	0	1	0	0	0	16373	912	32	3	3980	3	TNIK	3	170928989	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	22032684	170928989	27093441	31	4174											
KIAA0232	9778	hgsc.bcm.edu	37	chr4	6863223	6863223	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggggtaagagacctttaaaaGaaatagggagaaaagatcct	18	7	12	4	0	0	4	0	0	0	4	1	6	1	4	2	3	0	1	2	3	7	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	KIAA0232,NS,carcinoma,0,1	KIAA0232	NM_014743	exon7	c.G1114T	p.E372X	TTAAAAGAAATAG	.	49	2	50	0	.	0	T	6863223	G	T	6863223	4	4	26	1	0	0	0	0	0	1	0	0	8205	943	33	3	1132	3	KIAA0232	4	6863223	Nonsense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		6863223	184291053	32	4175											
NIPAL1	152519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48037901	48037901	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atttattatgtattcttcacAtccatggtagtgacttgctc	9	18	6	8	0	2	1	1	1	1	0	4	1	3	1	1	1	1	3	1	1	4	8	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_207330	exon6	c.A945T	p.T315T	CTTCACATCCATG	.	48	13	79	0	.	.	T	48037901	A	T	48037901	2	4	26	1	0	0	0	0	0	0	0	1	10471	204	8	5		5	NIPAL1	4	48037901	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	41174678	48037901	143116375	33	4176											
TXK	7294	hgsc.bcm.edu;broad.mit.edu	37	chr4	48096207	48096207	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttatctgataatgttttatgGcagcctccgtacttctacaa	10	16	6	9	1	2	1	0	1	2	0	3	1	3	1	2	1	3	3	2	1	6	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_003328	exon8	c.C596T	p.A199V	TTTATGGCAGCCT	.	62	4	53	0	.	.	A	48096207	G	A	48096207	3	1	26	1	0	0	0	0	1	0	0	0	16848	1203	42	3	1019	3	TXK	4	48096207	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	58306	48096207	143058069	34	4177											
WDFY3	23001	hgsc.bcm.edu	37	chr4	85678262	85678262	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggaaaatgacaagcatctcgGttaatctccctgaccgtcga	12	9	9	11	3	2	2	0	2	2	0	5	4	2	3	2	2	1	2	2	2	4	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014991	exon33	c.C5241T	p.N1747N	ATCTCGGTTAATC	.	71	3	94	0	.	.	A	85678262	G	A	85678262	2	1	26	1	0	0	0	0	0	0	0	1	17330	1252	44	3		3	WDFY3	4	85678262	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	37582055	85678262	105476014	35	4178											
DSPP	1834	bcgsc.ca	37	chr4	88536880	88536880	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agtaatagtagtgacagcagCaatagcagtgacagcagcaa	17	6	11	7	0	0	2	0	2	0	0	0	2	0	2	0	0	5	7	0	0	6	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	CAGCAGCAATAGC	.	60	7	58	1	.	174	T	88536880	T	T	88536880	2	4	26	1	0	0	0	0	0	0	0	1	4808	709	25	3		3	DSPP	4	88536880	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	2858618	88536880	102617396	36	4179											
DSPP	1834	bcgsc.ca	37	chr4	88537225	88537225	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacagcagtgatagcagtgaCagcagcaacagcagtgacag	15	4	13	9	0	0	3	0	3	0	0	0	4	0	3	0	0	6	5	0	0	2	1	rs201608130		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	DSPP	NM_014208	exon5	c.C3411A	p.D1137E	CAGTGACAGCAGC	.	48	7	33	0	.	174	A	88537225	A	A	88537225	3	1	26	1	0	0	0	0	1	0	0	0	4808	477	17	3	3425	3	DSPP	4	88537225	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	345	88537225	102617051	37	4180											
PRSS12	8492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	119259352	119259352	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ccagctgcagctggtgacaaAtgactgatgcatcagaatca	13	8	10	10	0	2	4	2	3	0	1	2	4	2	4	1	1	4	4	1	1	2	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_003619	exon2	c.T620C	p.I207T	TGACAAATGACTG	.	21	8	33	0	.	.	G	119259352	A	G	119259352	3	3	26	1	0	0	0	0	1	0	0	0	12665	101	4	4	2055	4	PRSS12	4	119259352	Missense_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	30722127	119259352	71894924	38	4181											
FAT1	2195	hgsc.bcm.edu	37	chr4	187549428	187549428	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccgccctttgtaggaggaagCggtgaaccacggggcgtggt	7	7	17	10	4	0	1	0	1	0	0	0	3	0	3	3	6	2	1	3	6	3	2	rs2304867	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FAT1,colon,carcinoma,0,2	FAT1	NM_005245	exon9	c.G4690T	p.A1564S	AGGAAGCGGTGAA	.	16	2	29	0	.	0	A	187549428	C	A	187549428	3	1	26	1	0	0	0	0	1	0	0	0	5722	768	27	2	9152	2	FAT1	4	187549428	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	68290076	187549428	3604848	39	4182											
SLC25A46	91137	hgsc.bcm.edu	37	chr5	110096916	110096916	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatttcagagtgagataattCgagataatactggcattttg	13	15	9	4	1	1	3	1	1	0	3	2	5	1	3	0	1	1	1	0	1	4	8	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SLC25A46,colon,carcinoma,0,3	SLC25A46	NM_138773	exon8	c.C691A	p.R231R	ATAATTCGAGATA	.	42	2	63	0	.	0	A	110096916	C	A	110096916	2	1	26	1	0	0	0	0	0	0	0	1	14566	876	31	2		2	SLC25A46	5	110096916	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		110096916	70818344	40	4183											
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	121758570	121758570	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tttttaaaaacagtttctagCtctagctggaattgtggcat	11	16	8	6	0	2	0	0	0	2	0	2	1	2	1	0	2	3	4	0	2	6	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005460	exon4	c.C138A	p.S46R	TTCTAGCTCTAGC	.	60	15	75	0	.	.	A	121758570	C	A	121758570	3	1	26	1	0	0	0	0	1	0	0	0	14895	796	28	3	148	3	SNCAIP	5	121758570	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	11661654	121758570	59156690	41	4184											
CDC25C	995	hgsc.bcm.edu	37	chr5	137621497	137621497	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agtcttgtggtcctgatgatGcatagggcagtagctctgtg	7	13	14	7	0	2	2	0	2	2	0	3	2	3	2	1	2	2	4	1	2	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CDC25C,NS,carcinoma,0,1	CDC25C	NM_001790	exon14	c.C1306A	p.H436N	GATGATGCATAGG	.	42	2	76	0	.	0	T	137621497	G	T	137621497	3	4	26	1	0	0	0	0	1	0	0	0	3086	1319	46	3	119	3	CDC25C	5	137621497	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	15862927	137621497	43293763	42	4185											
TCERG1	10915	broad.mit.edu	37	chr5	145859643	145859643	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aatgaagatgagcctgttaaAgcaaaaaaacggaagtaagt	20	7	10	4	1	0	3	0	2	0	1	0	4	0	4	1	1	3	3	1	1	9	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TCERG1	NM_006706	exon12	c.A1872G	p.K624K	TGTTAAAGCAAAA	.	108	4	128	0	.	148	G	145859643	A	G	145859643	2	3	26	1	0	0	0	0	0	0	0	1	15745	69	3	4		4	TCERG1	5	145859643	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	8238146	145859643	35055617	43	4186											
ATP10B	23120	hgsc.bcm.edu	37	chr5	160047807	160047807	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atccgagtctgtggtggccaCgttggcccctaagctctccc	5	10	11	15	2	2	0	0	0	2	0	4	1	3	0	5	3	1	2	5	3	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ATP10B,NS,carcinoma,0,1	ATP10B	NM_025153	exon15	c.G1963A	p.V655M	TGGCCACGTTGGC	.	26	2	36	0	.	0	T	160047807	C	T	160047807	3	4	26	1	0	0	0	0	1	0	0	0	1116	536	19	1	2470	1	ATP10B	5	160047807	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	14188164	160047807	20867453	44	4187											
B4GALT7	11285	bcgsc.ca	37	chr5	177035587	177035587	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggctggggccgcgaggacgaCgagttctaccggcgcattaa	8	6	16	11	6	1	0	0	0	1	0	1	4	1	1	2	5	1	3	2	5	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	B4GALT7	NM_007255	exon4	c.C687T	p.D229D	GGACGACGAGTTC	.	140	6	117	0	.	21	T	177035587	T	T	177035587	2	4	26	1	0	0	0	0	0	0	0	1	1274	535	19	1		1	B4GALT7	5	177035587	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	16987780	177035587	3879673	45	4188											
ZKSCAN4	387032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	28213220	28213220	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	attccgcctaaaggctttgcCacacatattgcactggtatg	10	12	8	11	1	0	0	0	0	0	0	1	0	1	0	3	2	2	3	3	2	4	6	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_019110	exon5	c.G1312A	p.G438S	CTTTGCCACACAT	.	64	14	68	0	.	.	T	28213220	C	T	28213220	3	4	26	1	0	0	0	0	1	0	0	0	17747	594	21	3	329	3	ZKSCAN4	6	28213220	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		28213220	142901847	46	4189											
C2	717	broad.mit.edu	37	chr6	31903768	31903768	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagagcccaaagtcctcatGtctgtcctgaacgacaactc	11	9	7	14	1	3	2	2	1	1	1	6	3	5	2	3	0	3	0	3	0	3	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	C2	NM_000063	exon7	c.G918T	p.M306I	CCTCATGTCTGTC	.	63	3	106	0	.	50	T	31903768	G	T	31903768	3	4	26	1	0	0	0	0	1	0	0	0	2088	1377	48	3	1021	3	C2	6	31903768	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	3690548	31903768	139211299	47	4190											
FTSJD2	23070	hgsc.bcm.edu;bcgsc.ca	37	chr6	37421057	37421057	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	catggattttgtatttgatcGcatgttcacaaatccgcggg	9	14	10	8	3	1	1	1	1	0	0	3	2	2	2	1	2	0	3	1	2	2	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015050	exon8	c.G746A	p.R249H	TTGATCGCATGTT	.	52	4	63	0	.	.	A	37421057	G	A	37421057	3	1	26	1	0	0	0	0	1	0	0	0	6126	1087	38	1	772	1	FTSJD2	6	37421057	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	5517289	37421057	133694010	48	4191											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38840868	38840868	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctctcctgccacggtttctaGgatgggcatggtctatatca	7	13	10	11	1	4	0	1	0	3	0	5	1	4	1	2	4	1	2	2	4	3	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001206927	exon51	c.G7424A	p.R2475K	TTTCTAGGATGGG	.	41	14	57	0	.	.	A	38840868	G	A	38840868	3	1	26	1	0	0	0	0	1	0	0	0	4634	1000	35	3	6959	3	DNAH8	6	38840868	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	1419811	38840868	132274199	49	4192											
FIG4	9896	hgsc.bcm.edu	37	chr6	110059612	110059612	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aattaaaagtactgtgcatcGtgactggcttttgtatatta	12	16	8	5	1	0	1	0	1	0	0	1	1	0	1	0	1	2	4	0	1	7	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FIG4,NS,carcinoma,0,2	FIG4	NM_014845	exon7	c.G731A	p.R244H	TGCATCGTGACTG	.	91	4	101	0	.	0	A	110059612	G	A	110059612	3	1	26	1	0	0	0	0	1	0	0	0	5921	1145	40	1	757	1	FIG4	6	110059612	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	71218744	110059612	61055455	50	4193											
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	119345170	119345170	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgccgtctgaagcttttggCatttgtcaagaagacttcca	9	13	10	9	1	2	3	1	1	1	2	3	3	3	3	2	1	2	2	2	1	3	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_024581	exon2	c.G968A	p.C323Y	TTTTGGCATTTGT	.	62	5	88	0	.	.	T	119345170	C	T	119345170	3	4	26	1	0	0	0	0	1	0	0	0	5542	710	25	3	2522	3	FAM184A	6	119345170	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	9285558	119345170	51769897	51	4194											
TBP	6908	hgsc.bcm.edu	37	chr6	170871016	170871016	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacaacaacaGcagcagcagcagcagcagca	17	0	10	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	10	0	0	3	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	36	3	34	0	.	0	A	170871016	G	A	170871016	2	1	26	1	0	0	0	0	0	0	0	1	15704	962	34	3		3	TBP	6	170871016	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	51525846	170871016	244051	52	4195											
ZDHHC4	55146	hgsc.bcm.edu	37	chr7	6621822	6621822	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccttgcattaccttcttctgCcctatctgctgctaggtgta	5	16	7	13	0	3	0	0	0	3	0	3	0	3	0	3	1	5	4	3	1	4	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ZDHHC4,caecum,carcinoma,-1,2	ZDHHC4	NM_018106	exon5	c.C310T	p.P104S	CTTCTGCCCTATC	.	48	2	97	0	.	-1	T	6621822	C	T	6621822	3	4	26	1	0	0	0	0	1	0	0	0	17675	739	26	3	320	3	ZDHHC4	7	6621822	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		6621822	152516841	53	4196											
INMT	11185	hgsc.bcm.edu;bcgsc.ca	37	chr7	30793366	30793366	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcctccaaggggacacGctgattgacattggctcagg	9	7	15	10	1	1	2	1	2	0	0	2	4	2	4	2	6	0	2	2	6	1	2	rs199553396		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	INMT,NS,carcinoma,0,2	INMT	NM_006774	exon2	c.G174A	p.T58T	GGACACGCTGATT	.	60	5	85	0	0.001	0	A	30793366	G	A	30793366	2	1	26	1	0	0	0	0	0	0	0	1	7789	1074	38	1		1	INMT	7	30793366	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	24171544	30793366	128345297	54	4197											
EGFR	1956	hgsc.bcm.edu	37	chr7	55249155	55249155	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagtacctgctcaactggtGtgtgcagatcgcaaaggtaa	11	9	11	10	1	1	1	1	0	0	1	2	1	1	1	2	2	4	5	2	2	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	EGFR,colon,carcinoma,+1,1	EGFR	NM_005228	exon20	c.G2453T	p.C818F	ACTGGTGTGTGCA	.	52	3	68	0	.	+1	T	55249155	G	T	55249155	3	4	26	1	0	0	0	0	1	0	0	0	4993	1377	48	3	2795	3	EGFR	7	55249155	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	24455789	55249155	103889508	55	4198											
TMEM120A	83862	broad.mit.edu	37	chr7	75618420	75618435	+	RNA	DEL	AGGGGGGTAGGGGGCT	AGGGGGGTAGGGGGCT	-																															gggtggaggttgagggggggAggggggtagggggctagggg																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GGGGGGAGGGGGG	.	6	2	5	0	.	.	-	75618435	AGGGGGGTAGGGGGCT	-	75618420	6	5	26	0	1	1	0	1	0	0	0	0	16093	319	11	0		0	TMEM120A	7	75618420	RNA	DEL	AGGGGGGTAGGGGGCT	TCGA-WD-A7RX-01A-12D-A417-09	20369265	75618420	83520243	56	4199											
FBXL13	222235	hgsc.bcm.edu	37	chr7	102518847	102518847	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatttagctctcttatcCtcatgcttgcaggaccatca	10	15	5	11	0	3	0	2	0	1	0	5	1	4	1	2	1	3	3	2	1	4	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001111038	exon15	c.G1439T	p.R480M	CTTATCCTCATGC	.	71	4	73	0	.	.	A	102518847	C	A	102518847	3	1	26	1	0	0	0	0	1	0	0	0	5742	681	24	3	792	3	FBXL13	7	102518847	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	26900427	102518847	56619816	57	4200											
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu	37	chr7	138768749	138768749	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgctggttacaaatctgctgCcgaccctctcccttataact	8	13	6	14	1	2	0	0	0	2	0	3	1	2	0	3	1	5	3	3	1	4	3	rs368718217		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ZC3HAV1,colon,carcinoma,0,1	ZC3HAV1	NM_024625	exon3	c.G474A	p.R158R	CTGCTGCCGACCC	.	47	3	67	0	.	0	T	138768749	C	T	138768749	2	4	26	1	0	0	0	0	0	0	0	1	17634	726	26	3		3	ZC3HAV1	7	138768749	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	36249902	138768749	20369914	58	4201											
TTC26	79989	hgsc.bcm.edu;bcgsc.ca	37	chr7	138819535	138819535	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	actggagctattaccctgttGgaggtaatgcccaaagaacg	12	9	11	9	1	0	1	0	0	0	1	0	3	0	3	2	3	4	3	2	3	5	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001144920	exon2	c.G138T	p.L46F	CCTGTTGGAGGTA	.	58	4	91	0	.	.	T	138819535	G	T	138819535	3	4	26	1	0	0	0	0	1	0	0	0	16756	1339	47	3	144	3	TTC26	7	138819535	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	50786	138819535	20319128	59	4202											
SSPO	23145	hgsc.bcm.edu	37	chr7	149503923	149503924	+	Silent	DNP	TA	TA	GT																															acgcagggccccgggatagaTagagtgtacgggcttctgcg																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	TA	TA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_198455	exon60	c.A8748T	.	ATAGATAGAGTGT	.	62	4	71	0	.	.	GT	149503924	TA	GT	149503923	2	3	26	1	0	0	0	0	0	0	0	1	15245	1403	49	4		4	SSPO	7	149503923	Silent	DNP	TA	TCGA-WD-A7RX-01A-12D-A417-09	10684388	149503923	9634740	60	4203											
GALNT11	63917	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	151800310	151800310	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcacagtgtcatagaccgcaCgccagcacacctgcttcatg	10	7	9	15	2	2	1	2	0	0	1	2	1	2	1	3	0	2	4	3	0	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_022087	exon4	c.C533T	p.T178M	ACCGCACGCCAGC	.	38	4	60	0	.	.	T	151800310	C	T	151800310	3	4	26	1	0	0	0	0	1	0	0	0	6249	536	19	1	543	1	GALNT11	7	151800310	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	2296387	151800310	7338353	61	4204											
PTPRN2	0	bcgsc.ca	37	chr7	157406760	157406760	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tctgcagcaggactgctcaaCcggccaatcagaacacaggg	12	5	11	13	1	3	1	2	0	1	1	3	2	3	2	2	3	5	3	2	3	3	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PTPRN2	.	.	.	.	GCTCAACCGGCCA	.	33	4	38	0	.	243	T	157406760	T	T	157406760	3	4	26	1	0	0	0	0	1	0	0	0	12860	522	18	3		3	PTPRN2	7	157406760	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	5606450	157406760	1731903	62	4205											
TUSC3	7991	hgsc.bcm.edu;bcgsc.ca	37	chr8	15531281	15531281	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agtctttgctatgacttctgGccagatgtggaaccatatcc	9	13	9	10	0	2	2	0	1	2	1	3	3	3	3	3	2	2	1	3	2	3	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_178234	exon6	c.G734A	p.G245D	CTTCTGGCCAGAT	.	53	4	76	0	.	.	A	15531281	G	A	15531281	3	1	26	1	0	0	0	0	1	0	0	0	16840	1203	42	3	756	3	TUSC3	8	15531281	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		15531281	130832741	63	4206											
CA3	761	hgsc.bcm.edu	37	chr8	86351153	86351153	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcgaccatggccaaggagtgGggctacgccagtcacaacgg	10	4	15	12	3	1	0	1	0	0	0	1	2	1	1	3	5	2	1	3	5	3	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005181	exon1	c.G15T	p.W5C	GGAGTGGGGCTAC	.	104	5	136	0	.	.	T	86351153	G	T	86351153	3	4	26	1	0	0	0	0	1	0	0	0	2535	1241	43	3	17	3	CA3	8	86351153	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	70819872	86351153	60012869	64	4207											
ATP6V0D2	245972	hgsc.bcm.edu	37	chr8	87162459	87162459	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	actctatcctgaggggttgcGgctgttggctcaagcagaag	8	10	14	9	1	2	2	1	1	1	1	3	2	3	2	1	4	2	5	1	4	3	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ATP6V0D2,NS,carcinoma,0,1	ATP6V0D2	NM_152565	exon6	c.G758T	p.R253L	GGTTGCGGCTGTT	.	50	2	86	0	.	0	T	87162459	G	T	87162459	3	4	26	1	0	0	0	0	1	0	0	0	1172	1116	39	2	780	2	ATP6V0D2	8	87162459	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	811306	87162459	59201563	65	4208											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110476496	110476496	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcgatatccaatacattggCacctgcttggagacttacag	11	10	10	10	1	0	1	0	0	0	1	1	3	1	1	2	3	3	2	2	3	4	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_177531	exon49	c.C7435T	p.H2479Y	CATTGGCACCTGC	.	75	24	82	0	.	.	T	110476496	C	T	110476496	3	4	26	1	0	0	0	0	1	0	0	0	12020	710	25	3	7629	3	PKHD1L1	8	110476496	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	23314037	110476496	35887526	66	4209											
GLIS3	169792	hgsc.bcm.edu;broad.mit.edu	37	chr9	4286060	4286060	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttcccaggatttggaggaaaAgggcttccaaactcctgctg	10	10	11	10	0	0	0	0	0	0	0	3	3	3	3	3	4	2	2	3	4	3	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001042413	exon2	c.T366C	p.P122P	AGGAAAAGGGCTT	.	65	4	85	0	.	.	G	4286060	A	G	4286060	2	3	26	1	0	0	0	0	0	0	0	1	6489	59	3	4		4	GLIS3	9	4286060	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09		4286060	136927371	67	4210											
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	15468838	15468838	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgactaactttgaatcgccGtatctgagaaaacaatatac	15	11	6	9	2	1	3	0	3	1	1	2	4	1	3	1	0	3	1	1	0	8	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	PSIP1_ENST00000380733,NS,carcinoma,+1,2	PSIP1_ENST00000380733	NM_001128217	exon14	c.C1210A	p.R404R	ATCGCCGTATCTG	.	21	7	36	0	.	+1	T	15468838	G	T	15468838	2	4	26	1	0	0	0	0	0	0	0	1	12712	1144	40	2		2	PSIP1	9	15468838	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	11182778	15468838	125744593	68	4211											
SIT1	27240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	35650620	35650620	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccacagtccccaggcctgggTtatggaggggattcctgtgg	6	9	15	11	0	0	0	0	0	0	0	2	2	2	2	5	6	0	1	5	6	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014450	exon2	c.A115G	p.T39A	CCTGGGTTATGGA	.	22	8	26	0	.	.	C	35650620	T	C	35650620	3	2	26	1	0	0	0	0	1	0	0	0	14399	1725	60	4	491	4	SIT1	9	35650620	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	20181782	35650620	105562811	69	4212											
FANCC	2176	hgsc.bcm.edu	37	chr9	98011555	98011555	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctgataatcacaagaaagatCtactgaatcttgagccatct	15	11	6	9	0	4	5	1	3	3	2	4	5	4	5	1	0	2	0	1	0	5	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FANCC_ENST00000289081,NS,carcinoma,0,1	FANCC_ENST00000289081	NM_001243743	exon2	c.G19A	p.D7N	AAAGATCTACTGA	.	34	2	33	0	.	0	T	98011555	C	T	98011555	3	4	26	1	0	0	0	0	1	0	0	0	5697	913	32	3	1713	3	FANCC	9	98011555	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	62360935	98011555	43201876	70	4213											
COL15A1	1306	hgsc.bcm.edu	37	chr9	101801014	101801014	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagctggtggggcctcCggttggtatctacagctgcc	4	11	14	12	1	1	1	0	1	1	0	3	1	3	1	4	5	4	4	4	5	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	COL15A1,NS,carcinoma,0,2	COL15A1	NM_001855	exon22	c.C2474T	p.P825L	GGCCTCCGGTTGG	.	47	3	113	0	.	0	T	101801014	C	T	101801014	3	4	26	1	0	0	0	0	1	0	0	0	3695	666	23	1	2560	1	COL15A1	9	101801014	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	3789459	101801014	39412417	71	4214											
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	1052974	1052974	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaggcttgcgataggctttTggctcatcgagtggaaacca	9	12	12	8	2	1	0	1	0	0	0	2	3	1	1	1	4	2	3	1	4	3	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_012341	exon10	c.T1019G	p.L340W	GGCTTTTGGCTCA	.	77	13	106	0	.	.	G	1052974	T	G	1052974	3	3	26	1	0	0	0	0	1	0	0	0	6923	1821	63	4	1057	4	GTPBP4	10	1052974	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09		1052974	134481773	72	4215											
ITGA8	8516	hgsc.bcm.edu	37	chr10	15649776	15649776	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttatcaaggaagagcgtcCgtttaatagctcctttctgt	9	14	10	8	2	2	1	1	0	1	1	4	2	4	2	2	2	2	3	2	2	5	5	rs140395954		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ITGA8,rectum,carcinoma,0,1	ITGA8	NM_003638	exon17	c.G1664A	p.R555Q	AGCGTCCGTTTAA	.	39	2	43	0	0.000	0	T	15649776	C	T	15649776	3	4	26	1	0	0	0	0	1	0	0	0	7926	652	23	1	1583	1	ITGA8	10	15649776	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	14596802	15649776	119884971	73	4216											
ZNF33A	7581	hgsc.bcm.edu;bcgsc.ca	37	chr10	38343567	38343567	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aaagtctgatgaatttaatgCctgtgggaaattgttactca	13	14	9	5	0	2	2	1	2	1	0	2	3	2	3	1	1	2	1	1	1	5	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006954	exon5	c.C515T	p.A172V	TTAATGCCTGTGG	.	92	4	102	0	.	.	T	38343567	C	T	38343567	3	4	26	1	0	0	0	0	1	0	0	0	17911	739	26	3	529	3	ZNF33A	10	38343567	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	22693791	38343567	97191180	74	4217											
CCDC147	159686	broad.mit.edu	37	chr10	106118238	106118238	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagaggcttcatgctgtcaTgaaaaagtcttatgacaatg	13	12	10	6	0	3	3	2	3	1	1	3	4	3	3	0	1	1	2	0	1	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	CCDC147	NM_001008723	exon2	c.T149C	p.M50T	CTGTCATGAAAAA	.	42	3	41	0	.	137	C	106118238	T	C	106118238	3	2	26	1	0	0	0	0	1	0	0	0	2799	1464	51	4	155	4	CCDC147	10	106118238	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	67774671	106118238	29416509	75	4218											
CYB5R2	51700	ucsc.edu	37	chr11	7686607	7686607	+	Nonstop_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gctgagcacgtggaggtgttAgtaggtgaaaatcatgtcct	10	11	14	6	1	1	2	1	2	0	0	2	3	2	3	1	3	1	4	1	3	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	CYB5R2	NM_016229	exon9	c.T829A	p.X277K	GGTGTTAGTAGGT	.	39	6	72	3	.	23	T	7686607	A	T	7686607	4	4	26	1	0	0	0	0	0	0	0	0	4150	433	15	5	5	5	CYB5R2	11	7686607	Nonstop_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09		7686607	127319909	76	4219											
QSER1	79832	hgsc.bcm.edu	37	chr11	32956871	32956871	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	taaaaacttggaacatttatCttcattttcttctgatgaag	13	17	5	6	0	4	2	1	2	3	0	4	3	4	3	0	1	2	0	0	1	6	8	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	QSER1,bladder,carcinoma,0,1	QSER1	NM_001076786	exon4	c.C3680T	p.S1227F	ATTTATCTTCATT	.	46	2	93	0	.	0	T	32956871	C	T	32956871	3	4	26	1	0	0	0	0	1	0	0	0	12934	913	32	3	3686	3	QSER1	11	32956871	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	25270264	32956871	102049645	77	4220											
OR4X1	390113	hgsc.bcm.edu	37	chr11	48285986	48285986	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tggcctgcgcagacaccttcTtcattagcctgctgatcatc	7	12	8	14	1	3	2	2	1	1	1	4	2	3	2	3	1	3	2	3	1	1	3	rs76457745	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	OR4X1,caecum,carcinoma,0,1	OR4X1	NM_001004726	exon1	c.T574A	p.F192I	ACCTTCTTCATTA	.	23	3	26	0	.	0	A	48285986	T	A	48285986	3	1	26	1	0	0	0	0	1	0	0	0	11132	1609	56	5	576	5	OR4X1	11	48285986	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	15329115	48285986	86720530	78	4221											
OR5AN1	390195	bcgsc.ca	37	chr11	59132169	59132169	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gctatatcagctccacagtcCccaagatgctctccaacctc	10	9	5	17	0	2	1	1	0	1	1	6	1	4	1	5	0	3	3	5	0	4	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	OR5AN1	NM_001004729	exon1	c.C238T	p.P80S	ACAGTCCCCAAGA	.	34	3	59	0	.	49	T	59132169	T	T	59132169	3	4	26	1	0	0	0	0	1	0	0	0	11190	623	22	3	240	3	OR5AN1	11	59132169	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	10846183	59132169	75874347	79	4222											
ATM	472	broad.mit.edu	37	chr11	108151894	108151894	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agaacctcaccttgtgaaaaAggtatatatggatgagtatt	15	12	9	5	0	1	3	1	2	0	1	1	4	1	4	2	2	1	2	2	2	7	6	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	ATM	NM_000051	exon24	c.A3575G	p.K1192R	TGAAAAAGGTATA	.	98	4	134	0	.	1657	G	108151894	A	G	108151894	5	3	26	1	0	0	0	0	0	0	1	0	1108	86	3	4	3665	4	ATM	11	108151894	Splice_Site	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	49019725	108151894	26854622	80	4223											
KDM5A	5927	bcgsc.ca	37	chr12	498247	498247	+	Missense_Mutation	SNP	A	C	C																															ccgcgtagccccccggccccAcgcccgccattgcaacggcc																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	KDM5A	NM_001042603	exon1	c.T11G	p.V4G	GGCCCCACGCCCG	.	103	33	136	9	.	307	C	498247	C	C	498247	3	2	26	1	0	0	0	0	1	0	0	0	8176	159	6	4	5173	4	KDM5A	12	498247	Missense_Mutation	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09		498247	133353648	81	4224	42	2									
KDM5A	5927	bcgsc.ca	37	chr12	498253	498253	+	Missense_Mutation	SNP	G	C	C																															agccccccggccccacgcccGccattgcaacggccgggggg																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	KDM5A	NM_001042603	exon1	c.C5G	p.A2G	ACGCCCGCCATTG	.	87	27	118	7	.	307	C	498253	C	C	498253	3	2	26	1	0	0	0	0	1	0	0	0	8176	1087	38	5	5179	5	KDM5A	12	498253	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	6	498253	133353642	82	4225	42	2									
CACNA2D4	93589	hgsc.bcm.edu	37	chr12	1987537	1987537	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgttggtgttcagaaaggCgtatccgtgcactccaagct	9	12	11	9	2	1	1	1	0	0	1	3	1	3	1	2	2	2	5	2	2	3	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CACNA2D4_ENST00000382722,rectum,carcinoma,0,2	CACNA2D4_ENST00000382722	NM_172364	exon16	c.G1663A	p.A555T	GAAAGGCGTATCC	.	65	4	84	0	.	0	T	1987537	C	T	1987537	3	4	26	1	0	0	0	0	1	0	0	0	2569	768	27	1	1842	1	CACNA2D4	12	1987537	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	1489284	1987537	131864358	83	4226											
AICDA	57379	bcgsc.ca	37	chr12	8757981	8757981	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gtcgggcacagtcgtagcagGggctccaggaggtgaaccag	9	5	17	10	2	0	1	0	1	0	0	3	2	1	2	2	5	2	4	2	5	2	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	AICDA	NM_020661	exon3	c.C257A	p.P86H	TAGCAGGGGCTCC	.	57	4	53	0	.	37	T	8757981	T	T	8757981	3	4	26	1	0	0	0	0	1	0	0	0	419	1232	43	3	351	3	AICDA	12	8757981	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	6770444	8757981	125093914	84	4227											
LRP6	4040	broad.mit.edu	37	chr12	12300324	12300324	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagatcactgctttcaattcGccggagatctgaatcagccc	10	10	9	12	2	4	3	3	1	1	2	5	5	4	3	2	1	2	1	2	1	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LRP6	NM_002336	exon15	c.C3373A	p.R1125R	CAATTCGCCGGAG	.	91	3	111	0	.	170	T	12300324	G	T	12300324	2	4	26	1	0	0	0	0	0	0	0	1	9007	1095	38	2		2	LRP6	12	12300324	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	3542343	12300324	121551571	85	4228											
FGD4	121512	bcgsc.ca	37	chr12	32786595	32786599	+	Frame_Shift_Del	DEL	AAGAA	-	-																															aagtggattcacagacagtgAagaaaagaaaagaaaaggaa																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	AAGAA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FGD4	NM_139241	exon15	c.1874_1878del	p.625_626del	ACAGTGAAGAAAA	.	185	4	199	0	.	86	-	32786599	-	-	32786595	7	5	26	1	0	1	0	1	0	0	0	0	5868	246	9	0	1924	0	FGD4	12	32786595	Frame_Shift_Del	DEL	AAGAA	TCGA-WD-A7RX-01A-12D-A417-09	20486271	32786595	101065300	86	4229											
MYO1H	283446	hgsc.bcm.edu;bcgsc.ca	37	chr12	109877582	109877582	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gagctggctgaggcctcctgGcatcttggaaaatgtaagga	10	9	14	8	0	1	1	0	1	1	0	2	4	2	3	2	5	1	4	2	5	3	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001101421	exon23	c.G2393T	p.G798V	CTCCTGGCATCTT	.	55	4	86	0	.	.	T	109877582	G	T	109877582	3	4	26	1	0	0	0	0	1	0	0	0	10123	1203	42	3	2483	3	MYO1H	12	109877582	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	77090987	109877582	23974313	87	4230											
MED13L	23389	hgsc.bcm.edu	37	chr12	116413011	116413011	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggccaagacgcccaagtcgcCcgattacaactctccagggt	10	6	10	15	3	1	1	0	0	1	1	3	2	1	1	4	2	2	0	4	2	4	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MED13L,right_upper_lobe,carcinoma,0,2	MED13L	NM_015335	exon25	c.G5696T	p.G1899V	AGTCGCCCGATTA	.	24	2	44	0	.	0	A	116413011	C	A	116413011	3	1	26	1	0	0	0	0	1	0	0	0	9481	623	22	3	964	3	MED13L	12	116413011	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	6535429	116413011	17438884	88	4231											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120582444	120582444	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ccaaggtcatggtacctactTtgaggatacaggggatgatg	11	10	13	7	0	1	2	1	2	0	0	1	4	1	4	2	5	3	1	2	5	4	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006836	exon41	c.A5351G	p.K1784R	CCTACTTTGAGGA	.	43	15	79	0	.	.	C	120582444	T	C	120582444	3	2	26	1	0	0	0	0	1	0	0	0	6339	1855	64	4	2736	4	GCN1L1	12	120582444	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	4169433	120582444	13269451	89	4232											
EP400	57634	hgsc.bcm.edu	37	chr12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAGCAG																															agcagcagcagcagcaacaaINScagcagcagcagcagcagca																								rs376034029		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	EP400,NS,carcinoma,0,15	EP400	NM_015409	exon47	c.8181_8182insCAGCAGCAGCAG	p.Q2727delinsQQQQQ	GCAACAACAGCAG	.	41	0	41	0	.	0	CAGCAGCAGCAG	132547094	-	CAGCAGCAGCAG	132547093	7	5	26	1	0	1	1	0	0	0	0	0	5177	40	2	0	8360	0	EP400	12	132547093	In_Frame_Ins	INS	-	TCGA-WD-A7RX-01A-12D-A417-09	11964649	132547093	1304802	90	4233											
LCP1	3936	hgsc.bcm.edu	37	chr13	46732997	46732997	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagctgatccttccatcttgGtccagatcacctgtagccat	9	12	7	13	0	2	2	1	1	1	1	5	2	5	2	5	1	2	2	5	1	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	LCP1,NS,carcinoma,0,1	LCP1	NM_002298	exon3	c.C192A	p.D64E	ATCTTGGTCCAGA	.	34	2	63	0	.	0	T	46732997	G	T	46732997	3	4	26	1	0	0	0	0	1	0	0	0	8730	1252	44	3	1747	3	LCP1	13	46732997	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		46732997	68436881	91	4234											
KPNA3	3839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	50275983	50275983	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttggctgttggatcaaaatTgtaggtacctccttgtgttg	7	16	12	6	0	1	0	1	0	0	0	2	1	2	1	2	3	1	6	2	3	4	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_002267	exon17	c.A1519G	p.N507D	CAAAATTGTAGGT	.	43	13	83	0	.	.	C	50275983	T	C	50275983	3	2	26	1	0	0	0	0	1	0	0	0	8474	1812	63	4	50	4	KPNA3	13	50275983	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	3542986	50275983	64893895	92	4235											
NEK3	4752	bcgsc.ca	37	chr13	52726745	52726745	+	Missense_Mutation	SNP	T	A	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aaaaatgtactccactcaccTtggacttgatatctctgtgt	11	14	6	10	0	2	1	1	1	1	0	4	2	3	2	2	1	1	1	2	1	4	4	rs373174576	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	NEK3	NM_002498	exon5	c.A392T	p.K131M	CTCACCTTGGACT	.	31	4	48	0	.	41	A	52726745	A	A	52726745	3	1	26	1	0	0	0	0	1	0	0	0	10372	1623	56	5	1176	5	NEK3	13	52726745	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09	2450762	52726745	62443133	93	4236											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	36192384	36192384	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aactcttcccaataggtcagCgatgacaatactgacagtaa	15	9	7	10	1	2	2	1	2	1	0	3	3	3	2	1	1	3	1	1	1	6	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_194301	exon15	c.G1953A	p.S651S	GGTCAGCGATGAC	.	123	7	169	0	.	.	T	36192384	C	T	36192384	2	4	26	1	0	0	0	0	0	0	0	1	13065	755	27	1		1	RALGAPA1	14	36192384	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		36192384	71157156	94	4237											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	52520801	52520801	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aatgctgctgtggccattcaAtgcctcctctggttcacccg	6	12	9	14	1	3	0	2	0	1	0	4	0	4	0	4	2	3	3	4	2	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_007361	exon4	c.T1006C	p.L336L	CATTCAATGCCTC	.	61	5	94	0	.	.	G	52520801	A	G	52520801	2	3	26	1	0	0	0	0	0	0	0	1	10462	98	4	4		4	NID2	14	52520801	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	16328417	52520801	54828739	95	4238											
C14orf178	283579	hgsc.bcm.edu	37	chr14	78236011	78236011	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctcagaaggctgtgaggatgCcatggggtaatgaatgtaaa	13	9	14	5	0	1	3	1	2	0	1	1	4	1	4	1	4	1	3	1	4	5	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	C14orf178,colon,carcinoma,-1,1	C14orf178	NM_174943	exon3	c.C359T	p.A120V	AGGATGCCATGGG	.	44	2	85	0	.	-1	T	78236011	C	T	78236011	3	4	26	1	0	0	0	0	1	0	0	0	1767	739	26	3	369	3	C14orf178	14	78236011	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	25715210	78236011	29113529	96	4239											
FOXN3	1112	bcgsc.ca	37	chr14	89629228	89629228	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttggcactgctgtagttgtGatcctccttggggtctccgc	3	14	12	12	1	1	1	0	1	1	0	4	1	3	1	3	3	1	4	3	3	1	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FOXN3	NM_001085471	exon7	c.C1003A	p.H335N	AGTTGTGATCCTC	.	34	5	42	0	.	78	T	89629228	T	T	89629228	3	4	26	1	0	0	0	0	1	0	0	0	6055	1290	45	3	473	3	FOXN3	14	89629228	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	11393217	89629228	17720312	97	4240											
TYRO3	7301	hgsc.bcm.edu	37	chr15	41862869	41862869	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcatcccagagcagcaGttcaccctgggccggatgtt	7	9	12	13	1	2	1	2	0	0	1	3	2	3	2	3	2	3	5	3	2	0	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TYRO3_ENST00000263798,lower_third,carcinoma,0,2	TYRO3_ENST00000263798	NM_006293	exon12	c.G1551C	p.Q517H	GCAGCAGTTCACC	.	48	2	56	0	.	0	C	41862869	G	C	41862869	3	2	26	1	0	0	0	0	1	0	0	0	16876	1020	36	5	1597	5	TYRO3	15	41862869	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		41862869	60668523	98	4241											
SEMA6D	80031	hgsc.bcm.edu	37	chr15	48055275	48055275	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atttcttctttcgagaaatcGctgtcgaacataataattta	13	16	5	7	3	2	1	0	0	2	1	5	3	2	1	0	0	1	1	0	0	5	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SEMA6D,rectum,carcinoma,0,1	SEMA6D	NM_153617	exon9	c.G721A	p.A241T	GAAATCGCTGTCG	.	41	2	52	0	.	0	A	48055275	G	A	48055275	3	1	26	1	0	0	0	0	1	0	0	0	14096	1087	38	1	751	1	SEMA6D	15	48055275	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	6192406	48055275	54476117	99	4242											
HDC	3067	broad.mit.edu	37	chr15	50550626	50550626	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tgaatcccaagcagttgatgGcatcagccagcatgtctcct	10	10	9	12	0	2	2	1	2	1	0	4	2	3	2	3	1	3	4	3	1	2	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	HDC	NM_002112	exon3	c.C293T	p.A98V	TTGATGGCATCAG	.	49	3	56	0	.	86	A	50550626	G	A	50550626	3	1	26	1	0	0	0	0	1	0	0	0	7056	1203	42	3	1735	3	HDC	15	50550626	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	2495351	50550626	51980766	100	4243											
LIPC	3990	bcgsc.ca	37	chr15	58834114	58834114	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccactacaccatcgccgtccGcaacacccgccttgtgggca	8	6	8	19	4	0	0	0	0	0	0	2	0	1	0	6	1	2	2	6	1	2	2	rs372054789		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LIPC	NM_000236	exon3	c.G404A	p.R135H	CCGTCCGCAACAC	.	54	4	68	0	.	56	A	58834114	A	A	58834114	3	1	26	1	0	0	0	0	1	0	0	0	8861	1087	38	1	414	1	LIPC	15	58834114	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	8283488	58834114	43697278	101	4244											
IREB2	3658	hgsc.bcm.edu;bcgsc.ca	37	chr15	78732192	78732192	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacagttcacataagaagttCttcgatgtatctaaacttgg	13	13	8	7	1	3	1	1	0	2	1	4	3	3	1	0	1	1	3	0	1	5	7	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_004136	exon2	c.C75A	p.F25L	GAAGTTCTTCGAT	.	91	4	94	0	.	.	A	78732192	C	A	78732192	3	1	26	1	0	0	0	0	1	0	0	0	7870	912	32	3	81	3	IREB2	15	78732192	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	19898078	78732192	23799200	102	4245											
ANPEP	290	hgsc.bcm.edu;bcgsc.ca	37	chr15	90336304	90336304	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gggatctccctccagttgttGgtattatttctgaagtgaat	8	16	10	7	0	2	2	0	2	2	0	4	3	3	3	2	2	0	3	2	2	4	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001150	exon16	c.C2211A	p.T737T	GTTGTTGGTATTA	.	69	4	101	0	.	.	T	90336304	G	T	90336304	2	4	26	1	0	0	0	0	0	0	0	1	704	1335	47	3		3	ANPEP	15	90336304	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	11604112	90336304	12195088	103	4246											
IGF1R	3480	hgsc.bcm.edu	37	chr15	99482568	99482568	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaattgcatggtagccgaaGatttcacagtcaaaatcgga	14	9	11	7	2	2	1	2	0	0	1	3	4	2	3	1	3	2	2	1	3	5	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	IGF1R,NS,lymphoid_neoplasm,0,1	IGF1R	NM_000875	exon18	c.G3436T	p.D1146Y	GCCGAAGATTTCA	.	43	2	57	0	.	0	T	99482568	G	T	99482568	3	4	26	1	0	0	0	0	1	0	0	0	7615	942	33	3	3506	3	IGF1R	15	99482568	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	9146264	99482568	3048824	104	4247											
C16orf71	146562	hgsc.bcm.edu;broad.mit.edu	37	chr16	4796983	4796983	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aggaggaagagatggcagctCtgggagacgcagagggggca	12	3	20	6	1	1	3	0	0	1	3	1	7	1	5	0	6	1	4	0	6	1	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_139170	exon8	c.C1237T	p.L413L	GCAGCTCTGGGAG	.	47	4	74	0	.	.	T	4796983	C	T	4796983	2	4	26	1	0	0	0	0	0	0	0	1	1837	912	32	3		3	C16orf71	16	4796983	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		4796983	85557770	105	4248											
BCL7C	9274	hgsc.bcm.edu	37	chr16	30904573	30904573	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctggcacccacttgaagataCgaagggaagtgtcgcccaca	12	6	11	12	2	0	2	0	1	0	1	1	4	0	3	2	2	1	1	2	2	4	2	rs138503357		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	BCL7C_ENST00000380317,NS,carcinoma,0,2	BCL7C_ENST00000380317	NM_004765	exon2	c.G131A	p.R44H	AAGATACGAAGGG	.	22	3	15	0	0.000	0	T	30904573	C	T	30904573	3	4	26	1	0	0	0	0	1	0	0	0	1378	536	19	1	542	1	BCL7C	16	30904573	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	26107590	30904573	59450180	106	4249											
THAP11	57215	broad.mit.edu	37	chr16	67876820	67876820	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcaacagcagcagcagcaGcaacagcagcagcagcagca	16	0	11	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	0	0	2	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	THAP11	NM_020457	exon1	c.G363A	p.Q121Q	GCAGCAGCAACAG	.	30	3	25	0	.	27	A	67876820	G	A	67876820	2	1	26	1	0	0	0	0	0	0	0	1	15903	962	34	3		3	THAP11	16	67876820	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	36972247	67876820	22477933	107	4250											
PMFBP1	83449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72174346	72174346	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggccagcttatttcgaagttCttgaatgagatcatcctgtt	9	15	9	8	1	2	2	1	2	1	1	4	4	3	2	2	1	1	3	2	1	3	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PMFBP1	NM_031293	exon6	c.G772A	p.E258K	GAAGTTCTTGAAT	.	83	17	93	0	.	101	T	72174346	C	T	72174346	3	4	26	1	0	0	0	0	1	0	0	0	12182	922	32	3	2375	3	PMFBP1	16	72174346	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	4297526	72174346	18180407	108	4251											
MINK1	50488	hgsc.bcm.edu	37	chr17	4799740	4799740	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagatccagagccagatcaCgccccatgccatcatcttcc	10	7	6	18	1	3	3	2	0	1	3	5	3	5	3	7	0	2	0	7	0	0	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MINK1_ENST00000355280,NS,carcinoma,0,1	MINK1_ENST00000355280	NM_153827	exon30	c.C3632T	p.T1211M	AGATCACGCCCCA	.	33	2	51	0	.	0	T	4799740	C	T	4799740	3	4	26	1	0	0	0	0	1	0	0	0	9635	536	19	1	3517	1	MINK1	17	4799740	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		4799740	76395470	109	4252											
ZBTB4	57659	hgsc.bcm.edu;broad.mit.edu	37	chr17	7369566	7369566	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggggctggggtaggaggtacCcaggcatcacctccctcccc	6	6	14	15	0	1	0	1	0	0	0	3	1	3	1	5	7	1	4	5	7	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001128833	exon3	c.G555A	p.W185X	AGGTACCCAGGCA	.	30	7	42	0	.	.	T	7369566	C	T	7369566	4	4	26	1	0	0	0	0	0	1	0	0	17600	624	22	3	2494	3	ZBTB4	17	7369566	Nonsense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	2569826	7369566	73825644	110	4253											
ANKFN1	162282	hgsc.bcm.edu	37	chr17	54431318	54431318	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	caacacacctaacagcgaggGcttgacacccctggatattg	12	7	9	13	1	0	1	0	1	0	0	0	3	0	2	3	2	3	1	3	2	3	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ANKFN1,colon,carcinoma,-1,1	ANKFN1	NM_153228	exon5	c.G521A	p.G174D	GCGAGGGCTTGAC	.	71	3	91	0	.	-1	A	54431318	G	A	54431318	3	1	26	1	0	0	0	0	1	0	0	0	621	1203	42	3	539	3	ANKFN1	17	54431318	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	47061752	54431318	26763892	111	4254											
CSH2	1443	hgsc.bcm.edu	37	chr17	61949936	61949936	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gacccctggcgccaccctcaCccccatcagcgtttggatgc	6	7	9	19	2	2	0	2	0	0	0	2	2	2	1	6	2	2	1	6	2	0	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_022644	exon4	c.G457A	p.V153M	CCCTCACCCCCAT	.	78	2	123	0	.	.	T	61949936	C	T	61949936	3	4	26	1	0	0	0	0	1	0	0	0	3966	521	18	3	252	3	CSH2	17	61949936	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	7518618	61949936	19245274	112	4255											
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	34205526	34205526	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cacggagccaccccccagtgGgtgccgggaccggaggaggg	7	2	18	14	3	0	0	0	0	0	0	0	4	0	4	6	6	2	0	6	6	0	0	rs368210942	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_025135	exon10	c.G1010T	p.G337V	CCAGTGGGTGCCG	.	58	16	68	0	.	.	T	34205526	G	T	34205526	3	4	26	1	0	0	0	0	1	0	0	0	5916	1232	43	3	1048	3	FHOD3	18	34205526	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		34205526	43871722	113	4256											
ALPK2	115701	hgsc.bcm.edu;bcgsc.ca	37	chr18	56202476	56202476	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgccaaggtcttcgctgagGagctagatgagcttgggggt	8	10	16	7	1	1	3	0	2	1	1	2	4	1	4	1	4	3	3	1	4	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_052947	exon5	c.C4943A	p.S1648Y	GCTGAGGAGCTAG	.	75	4	91	0	.	.	T	56202476	G	T	56202476	3	4	26	1	0	0	0	0	1	0	0	0	541	1174	41	3	1605	3	ALPK2	18	56202476	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	21996950	56202476	21874772	114	4257											
C19orf26	255057	broad.mit.edu	37	chr19	1234721	1234721	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattcttcaggtggtggaagTccccctccgtcagtgtgtac	6	12	11	12	1	3	0	2	0	1	0	5	1	5	1	3	3	1	1	3	3	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	C19orf26	NM_152769	exon6	c.A476G	p.D159G	TGGAAGTCCCCCT	.	74	4	80	1	.	31	C	1234721	T	C	1234721	3	2	26	1	0	0	0	0	1	0	0	0	1928	1667	58	4	901	4	C19orf26	19	1234721	Missense_Mutation	SNP	T	TCGA-WD-A7RX-01A-12D-A417-09		1234721	57894262	115	4258											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	chr19	9090831	9090831	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttgcttagtgtcatggaaaaAgggatagctgagttgggcat	11	12	14	4	0	1	1	1	1	0	0	1	3	1	3	0	3	2	4	0	3	4	4	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MUC16_ENST00000397910,bladder,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.T984C	p.P328P	GGAAAAAGGGATA	.	27	3	30	0	.	0	G	9090831	A	G	9090831	2	3	26	1	0	0	0	0	0	0	0	1	10021	59	3	4		4	MUC16	19	9090831	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	7856110	9090831	50038152	116	4259											
DNMT1	1786	ucsc.edu;bcgsc.ca	37	chr19	10250386	10250386	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcactgatagcccatgCggaccaggcagcggagggtg	9	5	17	10	2	0	1	0	1	0	0	0	3	0	3	2	5	4	2	2	5	1	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	DNMT1,colon,NS,0,1	DNMT1	NM_001130823	exon34	c.G3914A	p.R1305H	CCCATGCGGACCA	.	40	4	73	0	.	148	T	10250386	C	T	10250386	3	4	26	1	0	0	0	0	1	0	0	0	4702	768	27	1	1016	1	DNMT1	19	10250386	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	1159555	10250386	48878597	117	4260											
LPHN1	22859	bcgsc.ca	37	chr19	14266967	14266967	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cgggcttgagcacagatgagCttcggatcatcttgtgcagg	8	10	14	9	2	2	3	1	2	1	1	3	4	2	4	0	3	3	4	0	3	0	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LPHN1	NM_001008701	exon18	c.G3095A	p.S1032N	GATGAGCTTCGGA	.	40	5	46	0	.	107	T	14266967	T	T	14266967	3	4	26	1	0	0	0	0	1	0	0	0	8960	797	28	3	1357	3	LPHN1	19	14266967	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	4016581	14266967	44862016	118	4261											
BST2	684	hgsc.bcm.edu	37	chr19	17515240	17515240	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcatccagggaagccattaGggccatctaagaagagttag	13	8	12	8	0	1	2	0	0	1	2	2	3	2	3	3	2	2	2	3	2	5	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_004335	exon2	c.C292A	p.L98I	CCATTAGGGCCAT	.	86	4	85	0	.	.	T	17515240	G	T	17515240	3	4	26	1	0	0	0	0	1	0	0	0	1536	991	35	3	262	3	BST2	19	17515240	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	3248273	17515240	41613743	119	4262											
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36352740	36352740	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	atgagggcttcctggaggcgGggtcgcagggccggttcctg	4	8	19	10	3	0	1	0	1	0	0	3	2	2	2	3	7	0	3	3	7	0	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_199180	exon11	c.G1324T	p.G442W	GAGGCGGGGTCGC	.	54	17	35	0	.	.	T	36352740	G	T	36352740	3	4	26	1	0	0	0	0	1	0	0	0	8368	1232	43	3	1366	3	KIRREL2	19	36352740	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	18837500	36352740	22776243	120	4263											
FCGBP	8857	hgsc.bcm.edu	37	chr19	40419710	40419710	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actggcctggcagcaggcagCggtcatagacacagtcgcgc	9	5	14	13	3	1	1	1	0	0	1	2	1	1	1	1	4	2	3	1	4	1	1	rs149288039	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FCGBP,NS,carcinoma,0,1	FCGBP	NM_003890	exon6	c.G3284A	p.R1095H	AGGCAGCGGTCAT	.	39	2	50	0	0.000	0	T	40419710	C	T	40419710	3	4	26	1	0	0	0	0	1	0	0	0	5811	768	27	1	13057	1	FCGBP	19	40419710	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	4066970	40419710	18709273	121	4264											
DHDH	27294	hgsc.bcm.edu	37	chr19	49447641	49447641	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acccctgctggtgcccgaccGagctggtggtgaagggggag	6	6	18	11	2	0	1	0	1	0	0	0	4	0	2	4	5	3	2	4	5	1	0	rs373524516		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014475	exon6	c.G772T	p.E258X	CCGACCGAGCTGG	.	65	4	78	0	.	.	T	49447641	G	T	49447641	4	4	26	1	0	0	0	0	0	1	0	0	4507	1059	37	2	794	2	DHDH	19	49447641	Nonsense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	9027931	49447641	9681342	122	4265											
TEAD2	8463	hgsc.bcm.edu	37	chr19	49862735	49862735	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccgttctcagcttgatgtagCgggcgatcagttcattccga	7	12	11	11	4	3	1	3	1	1	0	5	3	4	1	2	1	2	4	2	1	1	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TEAD2,NS,carcinoma,0,1	TEAD2	NM_001256658	exon3	c.G254A	p.R85H	ATGTAGCGGGCGA	.	49	3	88	0	.	0	T	49862735	C	T	49862735	3	4	26	1	0	0	0	0	1	0	0	0	15798	768	27	1	1129	1	TEAD2	19	49862735	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	415094	49862735	9266248	123	4266											
LILRB5	10990	hgsc.bcm.edu	37	chr19	54760466	54760466	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggatggaatgtggaacttggCcttggctccaggctccagtg	7	10	15	9	0	0	0	0	0	0	0	2	3	2	3	3	6	1	2	3	6	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	LILRB5_ENST00000450632,colon,carcinoma,0,2	LILRB5_ENST00000450632	NM_001081442	exon3	c.G241A	p.A81T	ACTTGGCCTTGGC	.	67	2	62	0	.	0	T	54760466	C	T	54760466	3	4	26	1	0	0	0	0	1	0	0	0	8834	739	26	3	1578	3	LILRB5	19	54760466	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	4897731	54760466	4368517	124	4267											
AURKC	6795	hgsc.bcm.edu	37	chr19	57744038	57744038	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgagaaattagatgaacagcGcacagccacggtgaggtgcg	13	5	14	9	4	0	4	0	2	0	2	0	5	0	4	1	2	4	1	1	2	3	1	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	AURKC_ENST00000302804,NS,haematopoietic_neoplasm,+1,2	AURKC_ENST00000302804	NM_001015878	exon4	c.G425T	p.R142L	AACAGCGCACAGC	.	21	2	17	0	.	+1	T	57744038	G	T	57744038	3	4	26	1	0	0	0	0	1	0	0	0	1222	1087	38	2	444	2	AURKC	19	57744038	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	2983572	57744038	1384945	125	4268											
NSFL1C	55968	ucsc.edu;bcgsc.ca	37	chr20	1445015	1445015	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actgaactgggggttgcctgCgaaatggtcacaatgtcttc	9	11	12	9	1	2	1	1	1	1	0	3	2	2	1	1	3	3	1	1	3	3	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	NSFL1C,NS,carcinoma,-1,2	NSFL1C	NM_016143	exon2	c.G162A	p.S54S	TGCCTGCGAAATG	.	39	4	57	0	.	38	T	1445015	C	T	1445015	2	4	26	1	0	0	0	0	0	0	0	1	10720	755	27	1		1	NSFL1C	20	1445015	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		1445015	61580505	126	4269											
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3214919	3214919	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aggaagccatctaggtcgcgGtgcgcacggatctcttcctt	7	10	12	12	4	2	0	0	0	2	0	5	2	3	2	2	4	2	1	2	4	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001174090	exon5	c.C462A	p.H154Q	GTCGCGGTGCGCA	.	17	7	20	0	.	.	T	3214919	G	T	3214919	3	4	26	1	0	0	0	0	1	0	0	0	14707	1252	44	3	2358	3	SLC4A11	20	3214919	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	1769904	3214919	59810601	127	4270											
WFDC11	259239	broad.mit.edu	37	chr20	44279175	44279175	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatttctcccagcacaGacagtagcaccgtacagaag	12	8	7	14	1	2	2	1	0	1	2	4	2	3	2	3	0	3	4	3	0	3	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	WFDC11	NM_147197	exon3	c.C65A	p.S22Y	AGCACAGACAGTA	.	37	3	69	0	.	11	T	44279175	G	T	44279175	3	4	26	1	0	0	0	0	1	0	0	0	17409	942	33	3	210	3	WFDC11	20	44279175	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	41064256	44279175	18746345	128	4271											
GTPBP5	26164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60768516	60768516	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcagcaagattgaggaccGtgtttcagggcgtggggcat	8	10	15	8	2	2	2	2	1	1	1	3	3	2	3	1	4	1	3	1	4	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015666	exon2	c.G40A	p.V14M	AGGACCGTGTTTC	.	50	10	46	0	.	.	A	60768516	G	A	60768516	3	1	26	1	0	0	0	0	1	0	0	0	6924	1145	40	1	42	1	GTPBP5	20	60768516	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	16489341	60768516	2257004	129	4272											
UMODL1	89766	hgsc.bcm.edu	37	chr21	43543114	43543114	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agatcgagaaggtggttgtcGccatccagaagcgcttcctg	9	9	13	10	3	0	3	0	0	0	3	4	4	2	3	3	2	1	2	3	2	2	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	UMODL1,colon,carcinoma,0,1	UMODL1	NM_173568	exon16	c.G3385T	p.A1129S	GTTGTCGCCATCC	.	12	2	13	1	.	0	T	43543114	G	T	43543114	3	4	26	1	0	0	0	0	1	0	0	0	17040	1087	38	2	3447	2	UMODL1	21	43543114	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09		43543114	4586781	130	4273											
LIF	0	broad.mit.edu	37	chr22	30642384	30642386	+	In_Frame_Del	DEL	GAG	GAG	-																															agccagcgagtgtccggagcGaggaggaggaggaggagaag																								novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LIF	.	.	.	.	CGGAGCGAGGAGG	.	6	1	6	0	.	18	-	30642386	GAG	-	30642384	7	5	26	1	0	1	0	1	0	0	0	0	8819	1073	37	0		0	LIF	22	30642384	In_Frame_Del	DEL	GAG	TCGA-WD-A7RX-01A-12D-A417-09		30642384	20662182	131	4274											
TMPRSS6	164656	hgsc.bcm.edu	37	chr22	37494529	37494529	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taagatcctgggagaagtggCgattgagtacacgcagactg	12	8	14	7	2	0	4	0	1	0	3	1	6	1	4	1	2	1	2	1	2	3	3	rs371788844		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TMPRSS6,NS,carcinoma,0,1	TMPRSS6	NM_153609	exon3	c.G290A	p.R97H	AAGTGGCGATTGA	.	53	3	85	0	.	0	T	37494529	C	T	37494529	3	4	26	1	0	0	0	0	1	0	0	0	16311	768	27	1	2209	1	TMPRSS6	22	37494529	Missense_Mutation	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09	6852145	37494529	13810037	132	4275											
SLC25A6	293	broad.mit.edu	37	chrX	1506182	1506182	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ccccgagtacctcctttgcgCccggactgcatcatcatgcg	6	9	9	17	4	2	0	2	0	0	0	3	2	3	1	5	1	4	2	5	1	1	2	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	SLC25A6	NM_001636	exon3	c.G729T	p.G243G	TTTGCGCCCGGAC	.	105	4	101	0	.	27	A	1506182	C	A	1506182	2	1	26	1	0	0	0	0	0	0	0	1	14568	726	26	3		3	SLC25A6	23	1506182	Silent	SNP	C	TCGA-WD-A7RX-01A-12D-A417-09		1506182	153764378	133	4276											
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	14708892	14708892	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccttctgtttgtgtttgctGccttactggaatacgcagcg	5	15	11	10	2	1	0	0	0	1	0	1	1	1	1	2	1	5	4	2	1	3	5	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001118885	exon9	c.G991C	p.A331P	TTTGCTGCCTTAC	.	45	8	59	0	.	.	C	14708892	G	C	14708892	3	2	26	1	0	0	0	0	1	0	0	0	6497	1319	46	5	1093	5	GLRA2	23	14708892	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	13202710	14708892	140561668	134	4277											
SATL1	340562	hgsc.bcm.edu	37	chrX	84362915	84362915	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcctgattggcttggggctcGttgcggtggacctggttggc	2	12	18	9	2	0	1	0	1	0	0	1	2	0	2	2	7	1	4	2	7	0	4	rs374764586	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001012980	exon1	c.C1060T	p.R354X	GGGCTCGTTGCGG	.	105	4	109	0	.	.	A	84362915	G	A	84362915	4	1	26	1	0	0	0	0	0	1	0	0	13908	1153	40	1	858	1	SATL1	23	84362915	Nonsense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	69654023	84362915	70907645	135	4278											
AGTR2	186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	115304157	115304157	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatatgcccaatggtcAgctgggattgccttaatgaa	13	10	11	7	0	1	2	1	1	0	1	1	4	1	3	2	2	3	1	2	2	5	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000686	exon3	c.A624T	p.S208S	ATGGTCAGCTGGG	.	47	5	70	0	.	.	T	115304157	A	T	115304157	2	4	26	1	0	0	0	0	0	0	0	1	399	175	7	5		5	AGTR2	23	115304157	Silent	SNP	A	TCGA-WD-A7RX-01A-12D-A417-09	30941242	115304157	39966403	136	4279											
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	139586719	139586719	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tcggcgcccaagcgcttgctGatctcagaattgtgcatctt	7	12	10	12	3	2	2	1	1	2	1	4	2	2	2	1	1	3	3	1	1	2	3	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005634	exon1	c.C507T	p.I169I	CTTGCTGATCTCA	.	69	12	60	0	.	.	A	139586719	G	A	139586719	2	1	26	1	0	0	0	0	0	0	0	1	15005	1280	45	3		3	SOX3	23	139586719	Silent	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	24282562	139586719	15683841	137	4280											
PLXNB3	5365	broad.mit.edu	37	chrX	153040491	153040491	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaggggaggacggccactGtgccactgtgcgccagggcc	6	4	17	14	2	0	0	0	0	0	0	0	2	0	2	5	5	2	0	5	5	0	0	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PLXNB3	NM_001163257	exon25	c.G4157A	p.C1386Y	GCCACTGTGCCAC	.	17	3	17	0	.	208	A	153040491	G	A	153040491	3	1	26	1	0	0	0	0	1	0	0	0	12173	1377	48	3	4296	3	PLXNB3	23	153040491	Missense_Mutation	SNP	G	TCGA-WD-A7RX-01A-12D-A417-09	13453772	153040491	2230069	138	4281											
EPHA2	1969	hgsc.bcm.edu	37	chr1	16475262	16475263	+	Frame_Shift_Ins	INS	-	-	T																															ggtgatctcatcgggcgcaaINStggtgtcaatcttggtgaac																								novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_004431	exon3	c.434_435insA	p.I145fs	GGCGCAATGGTGT	.	19	12	16	0	.	.	T	16475263	-	T	16475262	7	5	27	1	0	1	1	0	0	0	0	0	5195	101	4	0	2556	0	EPHA2	1	16475262	Frame_Shift_Ins	INS	-	TCGA-YR-A95A-01A-12D-A417-09		16475262	232775359	1	4282											
ARID1A	8289	hgsc.bcm.edu	37	chr1	27101427	27101428	+	Frame_Shift_Ins	INS	-	-	T																															atgacaaggccccctccatcINStaactaccagcccccaccaa																								novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_006015	exon18	c.4709_4710insT	p.S1570fs	CTCCATCTAACTA	.	24	13	73	0	.	842	T	27101428	-	T	27101427	7	5	27	1	0	1	1	0	0	0	0	0	910	913	32	0	4779	0	ARID1A	1	27101427	Frame_Shift_Ins	INS	-	TCGA-YR-A95A-01A-12D-A417-09	10626165	27101427	222149194	2	4283											
AGBL4	84871	hgsc.bcm.edu	37	chr1	49056576	49056576	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cctctggaaccgttcctcatCctcaaagatgttgccataca	10	11	6	14	1	3	1	2	0	1	1	5	2	5	2	5	1	3	2	5	1	3	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	AGBL4,parotid,carcinoma,0,1	AGBL4	NM_032785	exon10	c.G1033A	p.D345N	CCTCATCCTCAAA	.	24	2	49	0	.	0	T	49056576	C	T	49056576	3	4	27	1	0	0	0	0	1	0	0	0	374	855	30	3	498	3	AGBL4	1	49056576	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	21955149	49056576	200194045	3	4284											
GBP4	115361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	89650997	89650997	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcttggaagccccaggtagAgtgacaatcattatgttgct	11	11	11	8	0	1	2	1	1	0	1	1	3	1	3	2	2	3	4	2	2	4	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_052941	exon11	c.T1863A	p.T621T	AGGTAGAGTGACA	.	54	21	68	0	.	.	T	89650997	A	T	89650997	2	4	27	1	0	0	0	0	0	0	0	1	6316	291	11	5		5	GBP4	1	89650997	Silent	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	40594421	89650997	159599624	4	4285											
CSF1	1435	hgsc.bcm.edu	37	chr1	110456921	110456921	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgttggtctgtctcctggCgagcaggagtatcaccgagg	6	11	15	9	2	3	0	1	0	2	0	4	3	3	1	2	4	1	4	2	4	1	3	rs202209718	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CSF1,NS,carcinoma,0,1	CSF1	NM_172210	exon2	c.C80A	p.A27E	TCCTGGCGAGCAG	.	29	2	37	0	.	0	A	110456921	C	A	110456921	3	1	27	1	0	0	0	0	1	0	0	0	3956	768	27	2	86	2	CSF1	1	110456921	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	20805924	110456921	138793700	5	4286											
CSDE1	7812	hgsc.bcm.edu	37	chr1	115262239	115262239	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aggcgctgcacttgccagtgCgctgattaagaatcactgag	10	9	12	10	2	1	3	1	2	0	1	1	3	1	3	1	1	3	3	1	1	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CSDE1_ENST00000369530,NS,carcinoma,-1,2	CSDE1_ENST00000369530	NM_001242891	exon19	c.G2315A	p.R772H	CCAGTGCGCTGAT	.	33	2	48	0	.	-1	T	115262239	C	T	115262239	3	4	27	1	0	0	0	0	1	0	0	0	3954	768	27	1	231	1	CSDE1	1	115262239	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	4805318	115262239	133988382	6	4287											
PDE4DIP	9659	hgsc.bcm.edu	37	chr1	144931041	144931041	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catctgggggtacctttgtgCttgctaagtcgggtggccca	5	12	14	10	1	1	0	0	0	1	0	2	0	1	0	2	4	3	3	2	4	2	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PDE4DIP_ENST00000313431,colon,carcinoma,0,1	PDE4DIP_ENST00000313431	NM_001002811	exon1	c.G668A	p.S223N	TTTGTGCTTGCTA	.	20	2	34	0	.	0	T	144931041	C	T	144931041	3	4	27	1	0	0	0	0	1	0	0	0	11690	797	28	3	7031	3	PDE4DIP	1	144931041	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	29668802	144931041	104319580	7	4288											
CHD1L	9557	hgsc.bcm.edu	37	chr1	146751820	146751820	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tggccagtgggtctctgatgCcttgcctgcagcagaaggag	7	9	15	10	0	1	2	0	1	1	1	2	3	1	3	3	3	4	2	3	3	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CHD1L,caecum,carcinoma,0,1	CHD1L	NM_004284	exon15	c.C1661T	p.A554V	CTGATGCCTTGCC	.	45	2	68	0	.	0	T	146751820	C	T	146751820	3	4	27	1	0	0	0	0	1	0	0	0	3346	739	26	3	1719	3	CHD1L	1	146751820	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	1820779	146751820	102498801	8	4289											
GON4L	54856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155792141	155792141	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggcaccatcctccaaggtaCggtcaagcatgtcatccagt	10	9	9	13	1	2	0	2	0	0	0	5	0	5	0	4	3	2	3	4	3	3	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GON4L	NM_032292	exon4	c.G824A	p.R275H	AAGGTACGGTCAA	.	41	4	81	0	.	392	T	155792141	C	T	155792141	3	4	27	1	0	0	0	0	1	0	0	0	6611	536	19	1	6131	1	GON4L	1	155792141	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	9040321	155792141	93458480	9	4290											
C1orf111	284680	ucsc.edu;bcgsc.ca	37	chr1	162343888	162343888	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttgcctaaggtgttcagcagGactattgaaggcctggcagc	9	10	13	9	0	1	1	1	1	0	0	1	2	1	2	2	4	3	3	2	4	3	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	C1orf111	NM_182581	exon3	c.C736A	p.P246T	CAGCAGGACTATT	.	23	4	34	0	.	26	T	162343888	G	T	162343888	3	4	27	1	0	0	0	0	1	0	0	0	1997	1174	41	3	53	3	C1orf111	1	162343888	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	6551747	162343888	86906733	10	4291											
CFHR3	10878	hgsc.bcm.edu	37	chr1	196759347	196759347	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagagtggtcggaaccaccAagatgcatacgtaagttctt	12	9	12	8	2	1	2	0	0	1	2	2	4	1	3	2	3	3	3	2	3	4	4	rs379049		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CFHR3,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CFHR3	NM_021023	exon5	c.A786T	p.P262P	ACCACCAAGATGC	.	34	7	54	1	.	0	T	196759347	A	T	196759347	2	4	27	1	0	0	0	0	0	0	0	1	3308	117	5	5		5	CFHR3	1	196759347	Silent	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	34415459	196759347	52491274	11	4292											
ACTN2	88	bcgsc.ca	37	chr1	236912525	236912525	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagggcgctatggaggatctGcaagatatgttcattgtcca	10	11	13	7	1	2	1	1	0	1	1	3	4	3	3	1	3	1	3	1	3	3	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ACTN2	NM_001103	exon14	c.G1617A	p.L539L	GGATCTGCAAGAT	.	20	3	31	0	.	191	A	236912525	A	A	236912525	2	1	27	1	0	0	0	0	0	0	0	1	205	1306	46	3		3	ACTN2	1	236912525	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	40153178	236912525	12338096	12	4293											
BIRC6	57448	hgsc.bcm.edu	37	chr2	32725169	32725169	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatagcagtgccatggcaatGataattggtatgtattgaga	14	12	11	4	0	0	2	0	2	0	1	0	3	0	2	1	2	2	4	1	2	6	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	BIRC6_ENST00000421745,colon,carcinoma,+2,1	BIRC6_ENST00000421745	NM_016252	exon46	c.G9024T	p.M3008I	GGCAATGATAATT	.	40	2	80	0	.	+2	T	32725169	G	T	32725169	3	4	27	1	0	0	0	0	1	0	0	0	1437	1290	45	3	9206	3	BIRC6	2	32725169	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		32725169	210474204	13	4294											
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86831421	86831421	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	actttccgagtcattttcagTatcttgagacccctccgaca	9	13	6	13	2	3	1	2	1	1	1	5	4	5	1	4	0	0	1	4	0	1	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005667	exon4	c.A1603G	p.T535A	TTTCAGTATCTTG	.	21	11	29	0	.	.	C	86831421	T	C	86831421	3	2	27	1	0	0	0	0	1	0	0	0	13475	1638	57	4	458	4	RNF103	2	86831421	Missense_Mutation	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	54106252	86831421	156367952	14	4295											
AFF3	3899	hgsc.bcm.edu	37	chr2	100199456	100199456	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catttttatttattggtattGccacactgaaaaaggaaatt	14	16	6	5	0	0	1	0	1	0	0	0	2	0	2	1	2	1	1	1	2	6	9	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	AFF3,colon,carcinoma,0,1	AFF3	NM_001025108	exon16	c.C2672A	p.A891E	GGTATTGCCACAC	.	28	2	23	1	.	0	T	100199456	G	T	100199456	3	4	27	1	0	0	0	0	1	0	0	0	357	1319	46	3	1119	3	AFF3	2	100199456	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	13368035	100199456	142999917	15	4296											
TBC1D8	11138	ucsc.edu	37	chr2	101646196	101646196	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgccagctctgggagatgaCccttgatgagctcctcgaag	8	9	12	12	1	1	4	0	3	1	1	3	6	2	4	3	1	3	2	3	1	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	TBC1D8	NM_001102426	exon12	c.G1934A	p.G645D	AGATGACCCTTGA	.	17	4	27	1	.	169	T	101646196	C	T	101646196	3	4	27	1	0	0	0	0	1	0	0	0	15685	507	18	3	1524	3	TBC1D8	2	101646196	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	1446740	101646196	141553177	16	4297											
ITGB6	3694	hgsc.bcm.edu	37	chr2	161030579	161030579	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttcacaatttcattgaatCtttcagcatcatttgtcaat	11	18	3	9	0	7	1	5	1	2	0	7	1	7	1	0	0	1	1	0	0	3	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ITGB6,NS,carcinoma,0,2	ITGB6	NM_000888	exon5	c.G665T	p.R222I	TTGAATCTTTCAG	.	36	2	48	0	.	0	A	161030579	C	A	161030579	3	1	27	1	0	0	0	0	1	0	0	0	7943	913	32	3	1745	3	ITGB6	2	161030579	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	59384383	161030579	82168794	17	4298											
LRP2	4036	hgsc.bcm.edu	37	chr2	170062925	170062925	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggctaaattttgtgtGaagtagattctatcacttac	12	14	8	7	0	2	3	1	1	1	2	2	3	2	3	1	1	1	2	1	1	6	7	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	LRP2,NS,carcinoma,0,1	LRP2	NM_004525	exon39	c.C7305A	p.F2435L	TTGTGTGAAGTAG	.	62	3	88	0	.	0	T	170062925	G	T	170062925	3	4	27	1	0	0	0	0	1	0	0	0	9001	1281	45	3	6826	3	LRP2	2	170062925	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	9032346	170062925	73136448	18	4299											
WDR12	55759	hgsc.bcm.edu	37	chr2	203748929	203748929	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tacatgactcacctttagttCggggatcccacagtctgata	10	12	8	11	1	2	2	1	2	1	0	4	3	3	3	2	2	1	1	2	2	3	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	WDR12,colon,carcinoma,0,1	WDR12	NM_018256	exon10	c.G980A	p.R327Q	TTAGTTCGGGGAT	.	33	2	54	0	.	0	T	203748929	C	T	203748929	3	4	27	1	0	0	0	0	1	0	0	0	17334	884	31	1	307	1	WDR12	2	203748929	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	33686004	203748929	39450444	19	4300											
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ttgatccccataagcatgacGacctatgatgataggtttta	12	13	8	8	1	0	4	0	4	0	0	1	5	1	4	3	1	1	2	3	1	4	6	rs121913499	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	38	16	46	0	.	0	A	209113113	G	A	209113113	3	1	27	1	0	0	0	0	1	0	0	0	7538	1058	37	1	878	1	IDH1	2	209113113	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	5364184	209113113	34086260	20	4301											
FN1	2335	hgsc.bcm.edu	37	chr2	216243985	216243985	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtggtgtccactgggcGctcaggcttgtgggtgtgac	3	12	18	8	1	1	1	1	1	0	0	2	1	2	1	1	5	0	2	1	5	0	2	rs376598003		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FN1,colon,carcinoma,0,1	FN1	NM_212482	exon34	c.C5490T	p.S1830S	CTGGGCGCTCAGG	.	41	2	46	0	.	0	A	216243985	G	A	216243985	2	1	27	1	0	0	0	0	0	0	0	1	5995	1078	38	1		1	FN1	2	216243985	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	7130872	216243985	26955388	21	4302											
GLB1L	79411	bcgsc.ca	37	chr2	220102658	220102658	+	Silent	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagtttgtctctcatatttcGctccacaacaccctggaaca	10	13	5	13	1	2	0	1	0	1	0	5	1	3	1	2	1	2	2	2	1	4	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GLB1L	NM_024506	exon15	c.C1363A	p.R455R	TATTTCGCTCCAC	.	43	4	44	0	.	52	T	220102658	T	T	220102658	2	4	27	1	0	0	0	0	0	0	0	1	6470	1095	38	2		2	GLB1L	2	220102658	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	3858673	220102658	23096715	22	4303											
PRLH	51052	hgsc.bcm.edu	37	chr2	238475690	238475690	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctggtacgccagtcgcGggatcaggcctgtgggccgc	4	7	16	14	4	1	0	1	0	0	0	2	1	1	1	4	4	2	1	4	4	1	1	rs147108124	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PRLH,NS,carcinoma,0,1	PRLH	NM_015893	exon2	c.G136A	p.G46R	AGTCGCGGGATCA	.	41	2	40	0	0.000	0	A	238475690	G	A	238475690	3	1	27	1	0	0	0	0	1	0	0	0	12581	1116	39	1	142	1	PRLH	2	238475690	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	18373032	238475690	4723683	23	4304											
HDAC4	9759	broad.mit.edu;bcgsc.ca	37	chr2	240016733	240016733	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccgcaagggagccggacGaacacggaggcgagcgagcc	11	0	16	14	6	0	0	0	0	0	0	0	6	0	3	4	4	4	1	4	4	2	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HDAC4,NS,carcinoma,0,1	HDAC4	NM_006037	exon17	c.C2238A	p.F746L	CCGGACGAACACG	.	104	8	183	1	.	127	T	240016733	G	T	240016733	3	4	27	1	0	0	0	0	1	0	0	0	7050	1049	37	2	1060	2	HDAC4	2	240016733	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	1541043	240016733	3182640	24	4305											
SLC6A6	6533	hgsc.bcm.edu	37	chr3	14513785	14513785	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcccacattttggtccattcTtttttttattatgcttctct	5	22	4	10	0	2	0	0	0	2	0	4	0	3	0	2	1	1	1	2	1	2	9	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_003043	exon10	c.T1169C	p.L390P	CCATTCTTTTTTT	.	32	2	82	1	.	58	C	14513785	T	C	14513785	3	2	27	1	0	0	0	0	1	0	0	0	14743	1609	56	4	1203	4	SLC6A6	3	14513785	Missense_Mutation	SNP	T	TCGA-YR-A95A-01A-12D-A417-09		14513785	183508645	25	4306											
NR2C2	7182	bcgsc.ca	37	chr3	15062263	15062263	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctttctcctgtttcaggccGtcactatggggctgtcagtt	4	16	10	11	1	5	0	3	0	2	0	6	0	5	0	2	3	0	3	2	3	1	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NR2C2	NM_003298	exon6	c.G437T	p.R146L	CAGGCCGTCACTA	.	30	3	68	0	.	44	T	15062263	T	T	15062263	3	4	27	1	0	0	0	0	1	0	0	0	10671	1145	40	2	455	2	NR2C2	3	15062263	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	548478	15062263	182960167	26	4307											
TLR9	54106	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	52255290	52255290	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tagaagtggtggttgtccctGgtcagggccatgcccagctg	6	10	15	10	0	1	1	1	0	0	1	2	1	2	1	3	4	2	2	3	4	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_017442	exon2	c.C3042T	p.T1014T	GTCCCTGGTCAGG	.	23	4	26	0	.	.	A	52255290	G	A	52255290	2	1	27	1	0	0	0	0	0	0	0	1	16018	1335	47	3		3	TLR9	3	52255290	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	37193027	52255290	145767140	27	4308											
GNL3	26354	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	52727227	52727227	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tactgaaatatactgtcccaGgctacaggaattctctggaa	13	11	8	9	0	1	1	0	1	1	0	3	3	2	3	1	3	3	1	1	3	7	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014366	exon11	c.G1069T	p.G357C	GTCCCAGGCTACA	.	18	4	22	0	.	.	T	52727227	G	T	52727227	3	4	27	1	0	0	0	0	1	0	0	0	6579	1000	35	3	1111	3	GNL3	3	52727227	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	471937	52727227	145295203	28	4309											
FOXP1	27086	hgsc.bcm.edu	37	chr3	71179760	71179760	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gaagcgggggttgccgagtgGtaaaaaagatgtttgaataa	14	9	15	3	2	0	2	0	1	0	1	0	4	0	2	1	3	2	3	1	3	6	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001244815	exon1	c.C75A	p.Y25X	CGAGTGGTAAAAA	.	30	6	28	0	.	.	T	71179760	G	T	71179760	4	4	27	1	0	0	0	0	0	1	0	0	6060	1276	44	3		3	FOXP1	3	71179760	Nonsense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	18452533	71179760	126842670	29	4310											
DNAJB8	165721	broad.mit.edu;bcgsc.ca	37	chr3	128181874	128181874	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccccgccaccagcccgccagCtgtcacagccagcacggtca	8	3	9	21	3	2	0	2	0	0	0	2	0	2	0	7	1	4	2	7	1	0	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DNAJB8	NM_153330	exon3	c.G215A	p.S72N	CGCCAGCTGTCAC	.	31	3	53	0	.	34	T	128181874	C	T	128181874	3	4	27	1	0	0	0	0	1	0	0	0	4653	797	28	3	487	3	DNAJB8	3	128181874	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	57002114	128181874	69840556	30	4311											
GFM1	85476	ucsc.edu;bcgsc.ca	37	chr3	158364712	158364712	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaccgaatgggctccaaccCagccagggccctgcagcaaa	11	3	12	15	1	0	0	0	0	0	0	1	2	1	1	5	3	4	3	5	3	3	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GFM1	NM_024996	exon4	c.C548T	p.P183L	CCAACCCAGCCAG	.	31	4	37	0	.	83	T	158364712	C	T	158364712	3	4	27	1	0	0	0	0	1	0	0	0	6383	594	21	3	562	3	GFM1	3	158364712	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	30182838	158364712	39657718	31	4312											
PCDH7	5099	broad.mit.edu	37	chr4	30724013	30724013	+	Frame_Shift_Del	DEL	G	G	-																															ttggctgagaacagcgccccGgggacccccatcctgcaact																								novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	PCDH7	NM_032457	exon1	c.969delG	p.P323fs	CGCCCCGGGGACC	.	6	2	15	0	.	215	-	30724013	G	-	30724013	7	5	27	1	0	1	0	1	0	0	0	0	11563	1103	39	0	971	0	PCDH7	4	30724013	Frame_Shift_Del	DEL	G	TCGA-YR-A95A-01A-12D-A417-09		30724013	160430263	32	4313											
HERC3	8916	hgsc.bcm.edu	37	chr4	89591061	89591061	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atttcatgaagctggtaaacCtctataaaggtgcagtcctt	12	13	8	8	0	2	1	1	1	1	0	3	1	3	1	2	2	3	3	2	2	6	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HERC3,colon,carcinoma,0,1	HERC3	NM_014606	exon15	c.C1684A	p.L562I	GTAAACCTCTATA	.	58	3	107	0	.	0	A	89591061	C	A	89591061	3	1	27	1	0	0	0	0	1	0	0	0	7100	681	24	3	1734	3	HERC3	4	89591061	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	58867048	89591061	101563215	33	4314											
GPRIN3	285513	hgsc.bcm.edu	37	chr4	90169820	90169820	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atttccccaatccataacttGtttcagcttgactgcatgca	10	14	5	12	0	1	1	1	1	0	0	3	1	3	1	3	0	4	4	3	0	2	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GPRIN3,right_lower_lobe,carcinoma,0,1	GPRIN3	NM_198281	exon2	c.C1442A	p.T481K	TAACTTGTTTCAG	.	40	2	29	0	.	0	T	90169820	G	T	90169820	3	4	27	1	0	0	0	0	1	0	0	0	6772	1377	48	3	892	3	GPRIN3	4	90169820	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	578759	90169820	100984456	34	4315											
FAT4	79633	hgsc.bcm.edu	37	chr4	126373374	126373374	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	accactatcttcattttttaCgcattgccagctcacagctg	9	14	5	13	1	3	0	2	0	1	0	3	0	3	0	2	0	4	3	2	0	2	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FAT4_ENST00000394329,NS,carcinoma,0,2	FAT4_ENST00000394329	NM_024582	exon9	c.C11203T	p.R3735C	TTTTTACGCATTG	.	38	3	70	0	.	0	T	126373374	C	T	126373374	3	4	27	1	0	0	0	0	1	0	0	0	5725	536	19	1	11237	1	FAT4	4	126373374	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	36203554	126373374	64780902	35	4316											
GUCY1A3	2982	hgsc.bcm.edu	37	chr4	156638432	156638432	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctctctgatgaagttatgtCtccccatggagaacctatca	10	12	8	11	0	3	3	1	2	2	1	5	4	3	3	3	1	1	2	3	1	4	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GUCY1A3,colon,carcinoma,0,1	GUCY1A3	NM_001130687	exon8	c.C1694A	p.S565Y	TTATGTCTCCCCA	.	24	2	46	0	.	0	A	156638432	C	A	156638432	3	1	27	1	0	0	0	0	1	0	0	0	6935	913	32	3	1731	3	GUCY1A3	4	156638432	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	30265058	156638432	34515844	36	4317											
RXFP1	59350	hgsc.bcm.edu	37	chr4	159514595	159514595	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gcaatttgacaaatattttgCcagttactacaaaatgactt	15	14	5	7	0	0	2	0	2	0	0	0	2	0	2	1	0	3	2	1	0	7	7	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RXFP1,NS,carcinoma,0,1	RXFP1	NM_021634	exon3	c.C230T	p.A77V	ATTTTGCCAGTTA	.	47	3	109	0	.	0	T	159514595	C	T	159514595	3	4	27	1	0	0	0	0	1	0	0	0	13811	739	26	3	240	3	RXFP1	4	159514595	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	2876163	159514595	31639681	37	4318											
ADAMTS16	170690	hgsc.bcm.edu	37	chr5	5209265	5209265	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaaggaatacaagtatcCtgagaaattgccaggagaat	16	9	11	5	0	0	3	0	2	0	2	1	6	1	4	2	2	2	1	2	2	7	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ADAMTS16_ENST00000274181,colon,carcinoma,0,2	ADAMTS16_ENST00000274181	NM_139056	exon10	c.C1511T	p.P504L	AGTATCCTGAGAA	.	38	2	49	0	.	0	T	5209265	C	T	5209265	3	4	27	1	0	0	0	0	1	0	0	0	260	681	24	3	1549	3	ADAMTS16	5	5209265	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		5209265	175705995	38	4319											
SLC30A5	64924	bcgsc.ca	37	chr5	68423847	68423847	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acagatacagaaaattgaagGattaatatcataccgagacc	19	8	7	7	1	1	4	1	1	0	3	1	6	1	5	2	1	2	0	2	1	7	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	SLC30A5	NM_022902	exon15	c.G2015T	p.G672V	TTGAAGGATTAAT	.	23	3	68	0	.	54	T	68423847	T	T	68423847	3	4	27	1	0	0	0	0	1	0	0	0	14613	1174	41	3	2161	3	SLC30A5	5	68423847	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	63214582	68423847	112491413	39	4320											
SLC4A9	83697	hgsc.bcm.edu	37	chr5	139751848	139751848	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggccttgtgggggtcCgaaaggccctggagagggtc	5	8	19	9	1	0	1	0	0	0	1	2	3	1	1	3	6	1	1	3	6	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SLC4A9_ENST00000506757,NS,carcinoma,0,2	SLC4A9_ENST00000506757	NM_001258428	exon20	c.C2764G	p.R922G	GGGGTCCGAAAGG	.	23	2	28	0	.	0	G	139751848	C	G	139751848	3	3	27	1	0	0	0	0	1	0	0	0	14715	644	23	5	2770	5	SLC4A9	5	139751848	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	71328001	139751848	41163412	40	4321											
PCDHB6	56130	hgsc.bcm.edu	37	chr5	140530549	140530549	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gttttggacatcaatgacaaCgtccccgagtttgctcagga	10	11	10	10	2	2	1	2	1	0	0	3	4	3	3	2	2	2	3	2	2	2	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PCDHB6,NS,carcinoma,0,1	PCDHB6	NM_018939	exon1	c.C711T	p.N237N	TGACAACGTCCCC	.	32	3	37	0	.	0	T	140530549	C	T	140530549	2	4	27	1	0	0	0	0	0	0	0	1	11593	535	19	1		1	PCDHB6	5	140530549	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	778701	140530549	40384711	41	4322											
HIST1H3G	8355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26271507	26271507	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtagcgatgaggtttcttcaCgccgccggtggccggcgcgc	4	8	16	13	7	2	1	1	1	1	0	2	2	2	1	3	4	1	2	3	4	1	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003534	exon1	c.G106T	p.V36L	TCTTCACGCCGCC	.	21	14	48	0	.	.	A	26271507	C	A	26271507	3	1	27	1	0	0	0	0	1	0	0	0	7202	536	19	2	308	2	HIST1H3G	6	26271507	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		26271507	144843560	42	4323											
ZNF165	7718	hgsc.bcm.edu	37	chr6	28053623	28053623	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gagtggagaggaggcagtgaCcatactagaagatttggaga	14	7	16	4	0	0	5	0	1	0	4	0	9	0	6	1	4	1	1	1	4	3	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ZNF165,colon,carcinoma,0,1	ZNF165	NM_003447	exon2	c.C365A	p.T122N	CAGTGACCATACT	.	15	2	22	0	.	0	A	28053623	C	A	28053623	3	1	27	1	0	0	0	0	1	0	0	0	17798	507	18	3	367	3	ZNF165	6	28053623	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	1782116	28053623	143061444	43	4324											
HLA-B	3106	hgsc.bcm.edu	37	chr6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctacacatcacaGcagcgaccacagctccgatg	10	8	6	17	2	2	0	1	0	1	0	5	2	5	0	4	0	4	2	4	0	1	2	rs74189305	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	45	8	51	2	.	-1	A	31322910	G	A	31322910	3	1	27	1	0	0	0	0	1	0	0	0	7237	971	34	3	114	3	HLA-B	6	31322910	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	3269287	31322910	139792157	44	4325											
CYP21A2	0	broad.mit.edu	37	chr6	31975463	31975463	+	RNA	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccagattcagcagcgactgTaggaggagctagaccacgaa	13	5	12	11	2	1	2	1	0	0	2	1	6	1	4	2	2	3	3	2	2	3	3	rs370433041		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	CYP21A2	.	.	.	.	CGACTGTAGGAGG	.	51	5	111	0	.	42	C	31975463	T	C	31975463	1	2	27	0	1	0	0	0	0	0	0	0	4176	1651	57	4		4	CYP21A2	6	31975463	RNA	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	652553	31975463	139139604	45	4326											
HLA-DQA1	3117	bcgsc.ca	37	chr6	32609758	32609758	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcaccacagaggttcctgAggtcacagtgttttccaagt	9	11	9	12	0	2	2	2	1	0	1	4	2	4	2	4	2	0	2	4	2	1	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HLA-DQA1	NM_002122	exon3	c.A341G	p.E114G	TTCCTGAGGTCAC	.	25	3	39	0	.	52	G	32609758	G	G	32609758	3	3	27	1	0	0	0	0	1	0	0	0	7245	304	11	4	351	4	HLA-DQA1	6	32609758	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	634295	32609758	138505309	46	4327											
KLHL31	401265	hgsc.bcm.edu	37	chr6	53519100	53519100	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acttctcagtaaggcctgggCgtcccccaacagtgacgagg	9	7	12	13	2	1	1	1	1	1	0	3	2	2	1	3	3	1	1	3	3	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KLHL31,NS,carcinoma,0,1	KLHL31	NM_001003760	exon2	c.G971T	p.R324L	CCTGGGCGTCCCC	.	35	2	30	0	.	0	A	53519100	C	A	53519100	3	1	27	1	0	0	0	0	1	0	0	0	8428	768	27	2	941	2	KLHL31	6	53519100	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	20909342	53519100	117595967	47	4328											
IBTK	25998	hgsc.bcm.edu;bcgsc.ca	37	chr6	82920614	82920614	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtattggcatttccagagctGcacaactggaagcctaaata	13	10	9	9	0	0	1	0	0	0	1	1	2	1	2	2	2	4	4	2	2	6	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015525	exon16	c.C2426T	p.A809V	AGAGCTGCACAAC	.	49	4	66	0	.	.	A	82920614	G	A	82920614	3	1	27	1	0	0	0	0	1	0	0	0	7520	1319	46	3	1691	3	IBTK	6	82920614	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	29401514	82920614	88194453	48	4329											
EZR	7430	hgsc.bcm.edu	37	chr6	159197491	159197491	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aactttttgtcattgaaagaGatgttcctgatttcactcca	11	16	6	8	0	2	3	2	2	0	1	4	4	4	3	2	0	1	1	2	0	2	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	EZR,NS,carcinoma,0,1	EZR	NM_003379	exon7	c.C744A	p.I248I	GAAAGAGATGTTC	.	22	2	44	0	.	0	T	159197491	G	T	159197491	2	4	27	1	0	0	0	0	0	0	0	1	5363	932	33	3		3	EZR	6	159197491	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	76276877	159197491	11917576	49	4330											
TNRC18	84629	broad.mit.edu	37	chr7	5352833	5352833	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgctactgctgccactactGctgctgctgctgctctcgga	4	12	10	15	1	1	0	0	0	1	0	2	1	1	1	1	1	10	7	1	1	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	TNRC18	NM_001080495	exon27	c.C7689T	p.S2563S	ACTACTGCTGCTG	.	41	3	65	0	.	311	A	5352833	G	A	5352833	2	1	27	1	0	0	0	0	0	0	0	1	16399	1310	46	3		3	TNRC18	7	5352833	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		5352833	153785830	50	4331											
GPNMB	10457	bcgsc.ca	37	chr7	23306191	23306191	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attcctgatgaaaactgccaGattaacagatatggccactt	14	11	7	9	0	0	4	0	2	0	2	1	4	1	4	3	1	3	0	3	1	4	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GPNMB	NM_001005340	exon7	c.G1110T	p.Q370H	CTGCCAGATTAAC	.	58	4	64	0	.	88	T	23306191	T	T	23306191	3	4	27	1	0	0	0	0	1	0	0	0	6660	933	33	3	1136	3	GPNMB	7	23306191	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	17953358	23306191	135832472	51	4332											
NFE2L3	9603	hgsc.bcm.edu;bcgsc.ca	37	chr7	26224962	26224962	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gctaaagctttgcatatcccTttttctgtagatgaaattgt	10	17	7	7	0	1	2	0	1	1	1	2	2	2	2	1	0	2	4	1	0	5	7	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_004289	exon4	c.T1644C	p.P548P	TATCCCTTTTTCT	.	78	4	110	0	.	.	C	26224962	T	C	26224962	2	2	27	1	0	0	0	0	0	0	0	1	10416	1596	56	4		4	NFE2L3	7	26224962	Silent	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	2918771	26224962	132913701	52	4333											
DDX56	54606	hgsc.bcm.edu	37	chr7	44611136	44611136	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgagcacacaggtggggatgCtgaactgttccaagaacagg	12	7	14	8	0	0	3	0	2	0	1	1	4	1	4	1	4	4	3	1	4	3	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001257189	exon6	c.G845A	p.S282N	GGGATGCTGAACT	.	56	4	55	0	.	.	T	44611136	C	T	44611136	3	4	27	1	0	0	0	0	1	0	0	0	4397	797	28	3	834	3	DDX56	7	44611136	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	18386174	44611136	114527527	53	4334											
SEMA3D	223117	hgsc.bcm.edu	37	chr7	84727276	84727276	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aatacagctatttgaaagcaGcaagtctatggaaagcaaaa	19	8	8	6	0	1	1	0	1	1	0	1	2	1	2	0	1	5	4	0	1	9	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SEMA3D,right_lower_lobe,carcinoma,0,1	SEMA3D	NM_152754	exon2	c.C157A	p.L53M	AAAGCAGCAAGTC	.	26	2	48	0	.	0	T	84727276	G	T	84727276	3	4	27	1	0	0	0	0	1	0	0	0	14081	962	34	3	2240	3	SEMA3D	7	84727276	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	40116140	84727276	74411387	54	4335											
SH2B2	10603	bcgsc.ca	37	chr7	101960825	101960825	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtccctgaacggccacGgccagtgtcacgtacagcat	8	7	11	15	3	1	1	1	1	0	0	2	1	2	1	4	2	3	2	4	2	2	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	SH2B2	.	.	.	.	GGCCACGGCCAGT	.	39	4	41	0	.	22	T	101960825	T	T	101960825	3	4	27	1	0	0	0	0	1	0	0	0	14282	1116	39	2	1314	2	SH2B2	7	101960825	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	17233549	101960825	57177838	55	4336											
ADAM7	8756	hgsc.bcm.edu	37	chr8	24300078	24300078	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atactggacacacccatgatGatgacatactggtacaagtt	14	10	8	9	0	0	3	0	3	0	0	0	4	0	4	1	2	3	2	1	2	4	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ADAM7,colon,carcinoma,0,1	ADAM7	NM_003817	exon2	c.G145T	p.D49Y	CATGATGATGACA	.	59	3	85	0	.	0	T	24300078	G	T	24300078	3	4	27	1	0	0	0	0	1	0	0	0	250	1290	45	3	151	3	ADAM7	8	24300078	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		24300078	122063944	56	4337											
GPR124	25960	hgsc.bcm.edu	37	chr8	37692771	37692771	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gacctgcacagccttccagaGgagggagggaggggtgccgg	8	4	19	10	1	0	1	0	0	0	1	1	5	1	4	4	6	3	1	4	6	0	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GPR124,NS,carcinoma,0,1	GPR124	NM_032777	exon12	c.G1688T	p.R563M	TCCAGAGGAGGGA	.	47	2	73	0	.	0	T	37692771	G	T	37692771	3	4	27	1	0	0	0	0	1	0	0	0	6678	1000	35	3	1713	3	GPR124	8	37692771	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	13392693	37692771	108671251	57	4338											
ADAM9	8754	hgsc.bcm.edu	37	chr8	38854669	38854669	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcccagtcctcggtgcGgcgcggccaggtgggtgtcc	2	7	19	13	4	0	0	0	0	0	0	3	0	2	0	4	6	1	0	4	6	0	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003816	exon1	c.G87T	p.A29A	CGGTGCGGCGCGG	.	22	4	58	0	.	.	T	38854669	G	T	38854669	2	4	27	1	0	0	0	0	0	0	0	1	252	1103	39	2		2	ADAM9	8	38854669	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	1161898	38854669	107509353	58	4339											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	55542175	55542175	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gactctttggataaactgtaTgctctttgtggtcaacattg	9	16	9	7	0	3	0	1	0	2	0	3	2	3	1	0	2	3	2	0	2	4	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_006269	exon4	c.T5733C	p.Y1911Y	ACTGTATGCTCTT	.	27	10	41	0	.	.	C	55542175	T	C	55542175	2	2	27	1	0	0	0	0	0	0	0	1	13584	1471	51	4		4	RP1	8	55542175	Silent	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	16687506	55542175	90821847	59	4340											
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	chr8	95655629	95655629	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggcaaatcctgcatccTgaggcttccaagaaggtaag	12	8	11	10	0	1	2	1	1	0	1	4	2	4	2	3	3	1	4	3	3	4	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001122827	exon3	c.T360C	p.P120P	GCATCCTGAGGCT	.	64	4	96	0	.	.	C	95655629	T	C	95655629	2	2	27	1	0	0	0	0	0	0	0	1	5286	1567	55	4		4	ESRP1	8	95655629	Silent	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	40113454	95655629	50708393	60	4341											
FER1L6	654463	broad.mit.edu	37	chr8	124989685	124989685	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgcagaagaactgtgCtgatcctgtgtggcatgaac	11	9	12	9	0	0	4	0	2	0	2	1	4	1	4	1	1	4	3	1	1	3	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	FER1L6	NM_001039112	exon10	c.C899T	p.A300V	ACTGTGCTGATCC	.	43	3	40	0	.	268	T	124989685	C	T	124989685	3	4	27	1	0	0	0	0	1	0	0	0	5848	797	28	3	933	3	FER1L6	8	124989685	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	29334056	124989685	21374337	61	4342											
DENND3	22898	hgsc.bcm.edu;ucsc.edu	37	chr8	142160984	142160984	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacctgcccgagcagaccccGaaagccccatcctggacctg	9	5	9	18	2	0	1	0	0	0	1	1	4	1	2	8	1	4	1	8	1	2	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014957	exon6	c.G547T	p.E183X	GACCCCGAAAGCC	.	43	4	68	0	.	.	T	142160984	G	T	142160984	4	4	27	1	0	0	0	0	0	1	0	0	4460	1059	37	2	565	2	DENND3	8	142160984	Nonsense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	17171299	142160984	4203038	62	4343											
BAI1	575	hgsc.bcm.edu	37	chr8	143599537	143599537	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctgccgtcggtgacgctcatCgtgggctgtggcgtgtcctc	2	11	15	13	5	1	1	1	1	0	0	5	1	2	1	2	3	1	2	2	3	0	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	BAI1,NS,carcinoma,0,1	BAI1	NM_001702	exon18	c.C2856T	p.I952I	GCTCATCGTGGGC	.	24	2	34	0	.	0	T	143599537	C	T	143599537	2	4	27	1	0	0	0	0	0	0	0	1	1296	874	31	1		1	BAI1	8	143599537	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	1438553	143599537	2764485	63	4344											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu	37	chr10	12126673	12126673	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agaaagactggtttgccaagCggtttgaggaactgcaaaag	14	8	13	6	1	0	3	0	1	0	2	0	4	0	4	1	3	4	3	1	3	5	2	rs141125831	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	DHTKD1,colon,carcinoma,0,1	DHTKD1	NM_018706	exon3	c.C445T	p.R149W	GCCAAGCGGTTTG	.	55	3	78	0	.	0	T	12126673	C	T	12126673	3	4	27	1	0	0	0	0	1	0	0	0	4528	759	27	1	455	1	DHTKD1	10	12126673	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		12126673	123408074	64	4345											
CUBN	8029	hgsc.bcm.edu;bcgsc.ca	37	chr10	17113484	17113484	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaagacagtgaagttgaGgagaatgacttggctttggg	12	11	14	4	0	1	5	1	3	0	2	1	6	1	5	0	3	0	2	0	3	3	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CUBN,caecum,carcinoma,0,1	CUBN	NM_001081	exon19	c.C2566A	p.L856I	AGTTGAGGAGAAT	.	82	4	102	1	.	0	T	17113484	G	T	17113484	3	4	27	1	0	0	0	0	1	0	0	0	4074	1000	35	3	8501	3	CUBN	10	17113484	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	4986811	17113484	118421263	65	4346											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32576188	32576188	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttccgtttcggtcggataagAtcggctttatcttgctgcaa	7	15	10	9	4	1	1	0	0	1	1	5	2	2	2	1	3	2	4	1	3	3	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_025209	exon7	c.T990A	p.D330E	GATAAGATCGGCT	.	34	12	68	0	.	.	T	32576188	A	T	32576188	3	4	27	1	0	0	0	0	1	0	0	0	5188	330	12	5	1556	5	EPC1	10	32576188	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	15462704	32576188	102958559	66	4347											
KCNMA1	3778	hgsc.bcm.edu	37	chr10	78704653	78704653	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caatattattctgattggctGacaggataacgcacatgtca	13	12	8	8	1	2	2	1	2	1	0	2	3	2	3	0	2	1	2	0	2	4	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001161352	exon23	c.C2780A	p.S927X	TTGGCTGACAGGA	.	57	4	55	0	.	.	T	78704653	G	T	78704653	4	4	27	1	0	0	0	0	0	1	0	0	8117	1294	45	3	983	3	KCNMA1	10	78704653	Nonsense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	46128465	78704653	56830094	67	4348											
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	79576791	79576791	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cggagcccacgacactccgcGgatatcttggtgttgatggg	7	9	14	11	4	1	1	0	1	1	0	2	4	2	3	2	4	1	1	2	4	1	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	DLG5,NS,carcinoma,0,1	DLG5	NM_004747	exon19	c.C3848T	p.P1283L	CTCCGCGGATATC	.	43	9	66	0	.	0	A	79576791	G	A	79576791	3	1	27	1	0	0	0	0	1	0	0	0	4586	1116	39	1	1967	1	DLG5	10	79576791	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	872138	79576791	55957956	68	4349											
KCNIP2	30819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103587678	103587678	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctccacgtgttcccttggggCctcctcccggagtgcagggt	3	10	13	15	2	0	0	0	0	0	0	4	1	4	1	5	4	1	2	5	4	0	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014591	exon8	c.G715A	p.A239T	TTGGGGCCTCCTC	.	16	4	42	0	.	.	T	103587678	C	T	103587678	3	4	27	1	0	0	0	0	1	0	0	0	8084	739	26	3	201	3	KCNIP2	10	103587678	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	24010887	103587678	31947069	69	4350											
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	114901068	114901068	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaccagccgacgtagacccCaaaacaggtaggctgtgggc	11	6	12	12	2	0	1	0	0	0	1	0	2	0	1	4	3	3	3	4	3	5	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001146283	exon6	c.C750A	p.P250P	AGACCCCAAAACA	.	46	18	62	0	.	.	A	114901068	C	A	114901068	2	1	27	1	0	0	0	0	0	0	0	1	15758	581	21	3		3	TCF7L2	10	114901068	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	11313390	114901068	20633679	70	4351											
PTPRE	5791	hgsc.bcm.edu	37	chr10	129861358	129861358	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tacacacaggtcccaaacagGaaacggttaacgacttctgg	14	7	9	11	2	1	0	0	0	1	0	2	2	2	1	1	4	4	1	1	4	4	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PTPRE,rectum,carcinoma,0,1	PTPRE	NM_006504	exon10	c.G637T	p.E213X	AAACAGGAAACGG	.	41	2	55	0	.	0	T	129861358	G	T	129861358	4	4	27	1	0	0	0	0	0	1	0	0	12852	1175	41	3	706	3	PTPRE	10	129861358	Nonsense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	14960290	129861358	5673389	71	4352											
PDDC1	347862	hgsc.bcm.edu	37	chr11	775135	775135	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaggaaggactgggcCgacacacctgcagaaggtcc	11	4	15	11	1	0	1	0	0	0	1	1	5	1	4	3	5	1	1	3	5	2	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PDDC1,NS,carcinoma,0,1	PDDC1	NM_182612	exon2	c.G72T	p.S24S	CTGGGCCGACACA	.	47	2	115	0	.	0	A	775135	C	A	775135	2	1	27	1	0	0	0	0	0	0	0	1	11676	639	23	2		2	PDDC1	11	775135	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		775135	134231381	72	4353											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10597943	10597943	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aggagtccctctgggctgccGagcaagtggatcttccaagg	8	8	14	11	1	2	0	0	0	2	0	4	3	4	2	3	4	2	2	3	4	2	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_130385	exon21	c.C2675T	p.S892L	GCTGCCGAGCAAG	.	12	6	34	0	.	.	A	10597943	G	A	10597943	3	1	27	1	0	0	0	0	1	0	0	0	9902	1059	37	1	67	1	MRVI1	11	10597943	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	9822808	10597943	124408573	73	4354											
TMEM216	51259	hgsc.bcm.edu	37	chr11	61161386	61161386	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	accatatccaacagctaaccTagtactggatgtggtgatgc	12	10	9	10	0	0	1	0	1	0	0	1	2	1	2	3	2	5	2	3	2	5	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001173990	exon3	c.T167C	p.L56P	CTAACCTAGTACT	.	51	4	71	0	.	.	C	61161386	T	C	61161386	3	2	27	1	0	0	0	0	1	0	0	0	16199	1522	53	4	177	4	TMEM216	11	61161386	Missense_Mutation	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	50563443	61161386	73845130	74	4355											
SLC35F2	54733	hgsc.bcm.edu	37	chr11	107686612	107686612	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gttcactttgtatctttctgCcaaatactggctggtgatgg	7	16	10	8	0	3	1	1	1	2	0	3	1	3	1	1	3	2	3	1	3	3	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_017515	exon2	c.G190A	p.A64T	TTTCTGCCAAATA	.	45	2	93	0	.	29	T	107686612	C	T	107686612	3	4	27	1	0	0	0	0	1	0	0	0	14644	739	26	3	962	3	SLC35F2	11	107686612	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	46525226	107686612	27319904	75	4356											
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	116691593	116691593	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggggcagctcagctctccAaaggggccagcatctgcacc	9	5	12	15	0	3	0	1	0	2	0	4	0	3	0	3	4	4	5	3	4	1	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_000482	exon3	c.T1181G	p.L394W	CTCTCCAAAGGGG	.	53	17	75	0	.	.	C	116691593	A	C	116691593	3	2	27	1	0	0	0	0	1	0	0	0	780	131	5	4	13	4	APOA4	11	116691593	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	9004981	116691593	18314923	76	4357											
ATN1	1822	ucsc.edu	37	chr12	7045885	7045885	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	catcaccatcaccaccagcaAcagcaacagcagcagcagca	16	2	6	17	0	2	0	2	0	0	0	2	0	2	0	3	0	8	6	3	0	2	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ATN1	NM_001007026	exon5	c.A1455G	p.Q485Q	CCAGCAACAGCAA	.	46	8	74	7	.	95	G	7045885	A	G	7045885	2	3	27	1	0	0	0	0	0	0	0	1	1110	40	2	4		4	ATN1	12	7045885	Silent	SNP	A	TCGA-YR-A95A-01A-12D-A417-09		7045885	126806010	77	4358											
PZP	5858	hgsc.bcm.edu	37	chr12	9356365	9356365	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaccgtagcactcacaGtgaaggagacacagtggaat	13	6	12	10	1	1	2	1	1	0	1	1	4	1	3	1	3	1	3	1	3	3	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PZP,NS,carcinoma,0,1	PZP	NM_002864	exon2	c.C266A	p.T89N	CTCACAGTGAAGG	.	35	2	74	0	.	0	T	9356365	G	T	9356365	3	4	27	1	0	0	0	0	1	0	0	0	12921	1043	36	3	4322	3	PZP	12	9356365	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	2310480	9356365	124495530	78	4359											
TAS2R20	259295	hgsc.bcm.edu	37	chr12	11150167	11150167	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttgagcaaataaaatatgCtgaggctagtagcaagccag	15	9	10	7	0	1	2	0	2	1	0	1	2	1	2	1	1	4	5	1	1	7	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	TAS2R20,NS,carcinoma,0,1	TAS2R20	NM_176889	exon1	c.G308A	p.S103N	AATATGCTGAGGC	.	38	2	53	0	.	0	T	11150167	C	T	11150167	3	4	27	1	0	0	0	0	1	0	0	0	15628	797	28	3	625	3	TAS2R20	12	11150167	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	1793802	11150167	122701728	79	4360											
TMTC1	83857	hgsc.bcm.edu	37	chr12	29786213	29786213	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccagtcatagcacagggtcAcgggtgcaagcagaagccac	12	4	13	12	1	2	1	2	0	0	1	2	1	2	1	2	2	4	3	2	2	3	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	TMTC1,NS,carcinoma,-1,1	TMTC1	NM_001193451	exon6	c.T995C	p.V332A	AGGGTCACGGGTG	.	48	2	45	0	.	-1	G	29786213	A	G	29786213	3	3	27	1	0	0	0	0	1	0	0	0	16320	159	6	4	1705	4	TMTC1	12	29786213	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	18636046	29786213	104065682	80	4361											
KRT8	3856	hgsc.bcm.edu	37	chr12	53294404	53294404	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgaggaagttgatctCgtcggtcagcccttccaggc	6	10	12	13	2	2	2	1	2	1	0	5	3	3	3	3	3	2	1	3	3	1	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KRT8,NS,lymphoid_neoplasm,0,1	KRT8	NM_001256282	exon5	c.G742T	p.E248X	TGATCTCGTCGGT	.	16	3	31	0	.	0	A	53294404	C	A	53294404	4	1	27	1	0	0	0	0	0	1	0	0	8536	893	31	2	813	2	KRT8	12	53294404	Nonsense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	23508191	53294404	80557491	81	4362											
ATP5G2	517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54063070	54063070	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aaatggcgctggtttggaagCtgcggctagagacaagtgag	11	8	16	6	2	0	2	0	1	0	1	0	4	0	3	0	4	2	4	0	4	4	2	rs13819	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005176	exon4	c.G344A	p.S115N	TGGAAGCTGCGGC	.	42	10	58	0	.	.	T	54063070	C	T	54063070	3	4	27	1	0	0	0	0	1	0	0	0	1153	797	28	3	260	3	ATP5G2	12	54063070	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	768666	54063070	79788825	82	4363											
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56524868	56524868	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gttcacccaggtcagagaaaAgagcagatcctgctggactt	12	8	11	10	0	2	3	2	0	0	3	3	5	3	4	2	2	2	3	2	2	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015292	exon4	c.A612G	p.K204K	GAGAAAAGAGCAG	.	33	14	55	0	.	.	G	56524868	A	G	56524868	2	3	27	1	0	0	0	0	0	0	0	1	5292	69	3	4		4	ESYT1	12	56524868	Silent	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	2461798	56524868	77327027	83	4364											
MDM2	4193	hgsc.bcm.edu	37	chr12	69229765	69229765	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctcagatgaagatgatgagGtagtattttttttcccctct	9	17	8	7	0	2	5	1	3	2	2	4	5	3	5	2	1	0	2	2	1	3	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_002392	exon9	c.840+1G>T	.	GATGAGGTAGTAT	.	90	4	112	0	.	.	T	69229765	G	T	69229765	5	4	27	1	0	0	0	0	0	0	1	0	9463	1275	44	3	875	3	MDM2	12	69229765	Splice_Site	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	12704897	69229765	64622130	84	4365											
LRRC43	254050	bcgsc.ca	37	chr12	122685442	122685442	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	accgtgtgcaacttcggcgtGgtccgcacattgacatctga	8	10	11	12	4	1	2	0	2	1	0	3	2	2	2	2	2	2	2	2	2	1	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	LRRC43_ENST00000339777,colon,carcinoma,0,2	LRRC43	NM_001098519	exon10	c.G1770T	p.V590V	CGGCGTGGTCCGC	.	51	4	67	0	.	105	T	122685442	T	T	122685442	2	4	27	1	0	0	0	0	0	0	0	1	9046	1335	47	3		3	LRRC43	12	122685442	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	53455677	122685442	11166453	85	4366											
NCOR2	9612	ucsc.edu	37	chr12	124839411	124839411	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttggggtccatgggcaggggCagccccatggtgacagggcc	6	6	18	11	0	0	1	0	1	0	0	1	1	1	1	4	7	1	2	4	7	0	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NCOR2	NM_006312	exon27	c.G3456A	p.L1152L	CAGGGGCAGCCCC	.	33	4	35	0	.	475	T	124839411	C	T	124839411	2	4	27	1	0	0	0	0	0	0	0	1	10283	697	25	3		3	NCOR2	12	124839411	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	2153969	124839411	9012484	86	4367											
FLT3	2322	hgsc.bcm.edu	37	chr13	28610128	28610128	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gatggtaatgggtatccatcCgagaaacaggacgcctgact	12	8	12	9	2	0	2	0	1	0	1	2	5	2	3	3	3	1	2	3	3	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FLT3,NS,carcinoma,-1,1	FLT3	NM_004119	exon11	c.G1362T	p.S454S	TCCATCCGAGAAA	.	29	2	42	0	.	-1	A	28610128	C	A	28610128	2	1	27	1	0	0	0	0	0	0	0	1	5975	639	23	2		2	FLT3	13	28610128	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		28610128	86559750	87	4368											
TRIM13	10206	hgsc.bcm.edu;ucsc.edu	37	chr13	50590789	50590789	+	RNA	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcagtatgttaaggatagttGctcctgagtcaattcttcac	10	15	8	8	0	4	1	3	1	1	0	5	2	5	2	1	1	1	4	1	1	4	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	ATAGTTGCTCCTG	.	54	6	79	0	.	.	T	50590789	G	T	50590789	1	4	27	0	1	0	0	0	0	0	0	0	16549	1334	46	3		3	TRIM13	13	50590789	RNA	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	21980661	50590789	64579089	88	4369											
MYCBP2	23077	bcgsc.ca	37	chr13	77818052	77818052	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaacatccacacacagCacaaccagattctccggaac	14	6	5	16	1	1	1	0	0	1	1	3	2	2	2	3	1	5	2	3	1	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	MYCBP2	NM_015057	exon16	c.G2416A	p.A806T	ACACAGCACAACC	.	48	4	62	0	.	1029	T	77818052	T	T	77818052	3	4	27	1	0	0	0	0	1	0	0	0	10066	710	25	3	11892	3	MYCBP2	13	77818052	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	27227263	77818052	37351826	89	4370											
POTEG	404785	broad.mit.edu	37	chr14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gcacttctggagaccacgacGattctgctatgaagacactc	11	9	9	12	2	2	3	0	1	2	2	3	6	2	3	1	1	1	2	1	1	2	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	POTEG	NM_001005356	exon1	c.G151A	p.D51N	CACGACGATTCTG	.	258	24	372	0	.	118	A	19553567	G	A	19553567	3	1	27	1	0	0	0	0	1	0	0	0	12313	1058	37	1	153	1	POTEG	14	19553567	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		19553567	87795973	90	4371											
KIAA0391	9692	hgsc.bcm.edu	37	chr14	35593125	35593125	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggattgatccattcagacaGatggagagaagcattgttgc	12	10	13	6	0	1	4	1	1	0	3	2	7	2	6	1	2	2	2	1	2	1	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KIAA0391,NS,carcinoma,0,1	KIAA0391	NM_014672	exon2	c.G674T	p.R225I	CAGACAGATGGAG	.	46	2	60	0	.	0	T	35593125	G	T	35593125	3	4	27	1	0	0	0	0	1	0	0	0	8214	942	33	3	676	3	KIAA0391	14	35593125	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	16039558	35593125	71756415	91	4372											
INSM2	84684	hgsc.bcm.edu	37	chr14	36004201	36004201	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caaggaggaggagcccggagCgccgtcccggggcttggggg	6	3	21	11	4	0	0	0	0	0	0	1	4	1	4	3	8	2	1	3	8	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	INSM2,NS,carcinoma,0,1	INSM2	NM_032594	exon1	c.C743T	p.A248V	CCGGAGCGCCGTC	.	34	2	57	0	.	0	T	36004201	C	T	36004201	3	4	27	1	0	0	0	0	1	0	0	0	7816	768	27	1	745	1	INSM2	14	36004201	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	411076	36004201	71345339	92	4373											
SOCS4	122809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	55510680	55510680	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaaaaccagagggtacCtttttacttcgagactcagc	13	9	10	9	1	1	2	1	0	0	2	2	5	1	3	2	2	4	1	2	2	5	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_080867	exon2	c.C921T	p.T307T	GGGTACCTTTTTA	.	52	23	68	0	.	.	T	55510680	C	T	55510680	2	4	27	1	0	0	0	0	0	0	0	1	14970	668	24	3		3	SOCS4	14	55510680	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	19506479	55510680	51838860	93	4374											
KIAA0317	9870	broad.mit.edu	37	chr14	75137486	75137486	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatgcttggttgttgtcactGaaccgggtgaagagctgatt	9	13	13	6	1	1	4	1	3	0	1	1	4	1	4	1	2	3	4	1	2	3	4	rs375792805	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	KIAA0317	NM_001039479	exon13	c.C1587A	p.F529L	GTCACTGAACCGG	.	43	3	54	0	.	68	T	75137486	G	T	75137486	3	4	27	1	0	0	0	0	1	0	0	0	8209	1281	45	3	916	3	KIAA0317	14	75137486	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	19626806	75137486	32212054	94	4375											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	90650699	90650699	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctggccggctggaagccctcCgtgtactacgtcatgctgat	6	10	12	13	3	1	1	1	1	0	0	2	2	2	2	3	3	4	3	3	3	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_022054	exon2	c.C579T	p.S193S	GCCCTCCGTGTAC	.	20	7	27	0	.	.	T	90650699	C	T	90650699	2	4	27	1	0	0	0	0	0	0	0	1	8105	639	23	1		1	KCNK13	14	90650699	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	15513213	90650699	16698841	95	4376											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51766722	51766722	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcaacaacagcttcacatagCaaaatgttcagttttggctg	13	11	8	9	0	2	0	2	0	0	0	2	0	2	0	0	1	4	6	0	1	5	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001174116	exon28	c.G7032A	p.L2344L	ACATAGCAAAATG	.	47	15	59	0	.	.	T	51766722	C	T	51766722	2	4	27	1	0	0	0	0	0	0	0	1	4623	709	25	3		3	DMXL2	15	51766722	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09		51766722	50764670	96	4377											
KIAA1024	23251	broad.mit.edu	37	chr15	79750676	79750676	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attgccagcatctccaactcGcccagagactggcgcaccat	10	7	8	16	2	1	1	0	0	1	1	3	2	1	1	4	1	3	2	4	1	1	1	rs139072268		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	KIAA1024	NM_015206	exon2	c.G2187A	p.S729S	CAACTCGCCCAGA	.	42	3	56	0	G|1.000;A|0.000	146	A	79750676	G	A	79750676	2	1	27	1	0	0	0	0	0	0	0	1	8247	1074	38	1		1	KIAA1024	15	79750676	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	27983954	79750676	22780716	97	4378											
HAGHL	84264	broad.mit.edu	37	chr16	777490	777490	+	Translation_Start_Site	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctgttttggagcaggcaccGgtggccgagctccgtgacca	6	8	14	13	3	0	1	0	1	0	0	1	3	1	2	5	4	2	4	5	4	0	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HAGHL	.	.	.	.	GGCACCGGTGGCC	.	65	3	134	0	.	18	A	777490	G	A	777490	1	1	27	1	0	0	0	0	0	0	0	0	6987	1131	39	1		1	HAGHL	16	777490	Translation_Start_Site	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		777490	89577263	98	4379											
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4802537	4802537	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctcacctgtgtgcgtccggCggtgggcgctgaagtgcgag	4	9	17	11	5	1	1	1	1	1	0	3	2	2	1	2	3	2	1	2	3	1	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_021646	exon6	c.G1283A	p.R428H	GTCCGGCGGTGGG	.	32	10	31	0	.	.	T	4802537	C	T	4802537	3	4	27	1	0	0	0	0	1	0	0	0	18005	768	27	1	163	1	ZNF500	16	4802537	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	4025047	4802537	85552216	99	4380											
TXNDC11	51061	hgsc.bcm.edu	37	chr16	11785750	11785750	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgggtcctggagaaggagtgCcactggggcagcaccacagt	9	6	16	10	0	0	1	0	0	0	1	1	3	1	2	3	5	2	2	3	5	1	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015914	exon8	c.G1296A	p.W432X	GGAGTGCCACTGG	.	29	4	30	0	.	.	T	11785750	C	T	11785750	4	4	27	1	0	0	0	0	0	1	0	0	16854	740	26	3	1600	3	TXNDC11	16	11785750	Nonsense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	6983213	11785750	78569003	100	4381											
HEATR3	55027	ucsc.edu;bcgsc.ca	37	chr16	50118142	50118142	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcgggggacagctgttttcTcccctctgcctctcccatga	4	12	10	15	1	3	1	0	1	3	0	5	2	3	2	4	2	3	2	4	2	0	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HEATR3	NM_182922	exon9	c.T1230C	p.S410S	GTTTTCTCCCCTC	.	35	4	62	0	.	59	C	50118142	T	C	50118142	2	2	27	1	0	0	0	0	0	0	0	1	7070	1538	54	4		4	HEATR3	16	50118142	Silent	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	38332392	50118142	40236611	101	4382											
PLA2G15	23659	hgsc.bcm.edu	37	chr16	68289247	68289247	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctacacacggggtgaggatGtccgaggggctccctatgac	8	7	15	11	2	0	2	0	2	0	0	2	4	2	3	2	5	1	2	2	5	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PLA2G15,ear,carcinoma,0,1	PLA2G15	NM_012320	exon4	c.G466A	p.V156I	GAGGATGTCCGAG	.	37	2	40	0	.	0	A	68289247	G	A	68289247	3	1	27	1	0	0	0	0	1	0	0	0	12040	1377	48	3	480	3	PLA2G15	16	68289247	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	18171105	68289247	22065506	102	4383											
RFWD3	55159	bcgsc.ca	37	chr16	74685875	74685875	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aacaacccctccatactctgCagagctgtcactgtcagaat	12	9	6	14	0	3	2	2	0	1	2	4	2	4	2	3	0	5	2	3	0	4	1	rs375666291		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	RFWD3	NM_018124	exon3	c.G664A	p.A222T	ACTCTGCAGAGCT	.	45	4	66	0	.	49	T	74685875	T	T	74685875	3	4	27	1	0	0	0	0	1	0	0	0	13313	710	25	3	1704	3	RFWD3	16	74685875	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	6396628	74685875	15668878	103	4384											
NLRP1	22861	bcgsc.ca	37	chr17	5462653	5462653	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtccgagccgtgatcaGgaaggatgcctcgggaagta	9	8	16	8	3	1	1	1	1	0	0	3	5	2	4	3	4	2	1	3	4	3	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NLRP1	NM_033007	exon4	c.C1363A	p.L455M	TGATCAGGAAGGA	.	18	3	32	0	.	358	T	5462653	T	T	5462653	3	4	27	1	0	0	0	0	1	0	0	0	10518	991	35	3	3189	3	NLRP1	17	5462653	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		5462653	75732557	104	4385											
B9D1	27077	broad.mit.edu	37	chr17	19251158	19251158	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaccacatcgttcccgaacaCatctggtccatacacgctga	12	8	6	15	3	1	1	0	1	1	0	4	2	3	1	3	1	3	2	3	1	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	B9D1	NM_001243473	exon4	c.G339T	p.M113I	CGAACACATCTGG	.	21	3	29	0	.	8	A	19251158	C	A	19251158	3	1	27	1	0	0	0	0	1	0	0	0	1275	478	17	3	350	3	B9D1	17	19251158	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	13788505	19251158	61944052	105	4386											
CPD	1362	hgsc.bcm.edu	37	chr17	28750570	28750570	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aatatgcatggaaatgaagtGgttggaagagaactgctgtt	14	11	13	3	0	0	2	0	1	0	1	0	5	0	4	0	3	3	4	0	3	6	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CPD,NS,carcinoma,0,1	CPD	NM_001304	exon6	c.G1704T	p.V568V	TGAAGTGGTTGGA	.	65	3	97	0	.	0	T	28750570	G	T	28750570	2	4	27	1	0	0	0	0	0	0	0	1	3821	1335	47	3		3	CPD	17	28750570	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	9499412	28750570	52444640	106	4387											
RUNDC3A	10900	hgsc.bcm.edu	37	chr17	42392345	42392345	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gggaagacccccgtggtcatCgattacacgccctacctaaa	11	7	9	14	3	1	1	1	0	0	1	2	3	1	2	4	2	2	0	4	2	5	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RUNDC3A_ENST00000225441,NS,carcinoma,0,2	RUNDC3A_ENST00000225441	NM_001144825	exon6	c.C597T	p.I199I	GGTCATCGATTAC	.	48	2	75	0	.	0	T	42392345	C	T	42392345	2	4	27	1	0	0	0	0	0	0	0	1	13796	874	31	1		1	RUNDC3A	17	42392345	Silent	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	13641775	42392345	38802865	107	4388											
CDC27	996	hgsc.bcm.edu	37	chr17	45249328	45249328	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caagcaggtatttgcattgcGgtgtagtacaactgtgtcct	9	13	11	8	1	0	0	0	0	0	0	1	0	1	0	1	2	5	5	1	2	5	5	rs142853734		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CDC27_ENST00000531206,NS,haematopoietic_neoplasm,0,2	CDC27_ENST00000531206	NM_001114091	exon3	c.C206T	p.P69L	CATTGCGGTGTAG	.	37	2	40	0	.	0	A	45249328	G	A	45249328	3	1	27	1	0	0	0	0	1	0	0	0	3088	1116	39	1	2354	1	CDC27	17	45249328	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	2856983	45249328	35945882	108	4389											
RPTOR	57521	broad.mit.edu	37	chr17	78727809	78727809	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cccgaatgttctgcccttcaGgtagctgcaatcaacccaaa	11	9	7	14	1	3	0	2	0	1	0	3	1	3	0	3	1	4	4	3	1	5	3	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	RPTOR	NM_001163034	exon6	c.655-1G>T	.	CCTTCAGGTAGCT	.	33	3	39	0	.	122	T	78727809	G	T	78727809	5	4	27	1	0	0	0	0	0	0	1	0	13717	1014	35	3	676	3	RPTOR	17	78727809	Splice_Site	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	33478481	78727809	2467401	109	4390											
C19orf59	199675	bcgsc.ca	37	chr19	7741979	7741979	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaccatggaagtggaGgaaatctacaagcaccagga	14	5	14	8	0	1	0	0	0	1	0	1	5	1	5	2	6	2	1	2	6	4	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	C19orf59	NM_174918	exon1	c.G12T	p.E4D	AGTGGAGGAAATC	.	56	4	68	0	.	15	T	7741979	T	T	7741979	3	4	27	1	0	0	0	0	1	0	0	0	1952	991	35	3	14	3	C19orf59	19	7741979	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		7741979	51387004	110	4391											
ANO8	57719	bcgsc.ca	37	chr19	17435833	17435833	+	Silent	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtgactgggcagggggAggccgggtggtggctccggc	3	6	24	8	2	0	1	0	1	0	0	1	2	1	2	2	9	0	2	2	9	0	0	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ANO8,caecum,carcinoma,0,1	ANO8	NM_020959	exon17	c.T3024C	p.P1008P	AGGGGGAGGCCGG	.	50	7	64	3	.	67	G	17435833	G	G	17435833	2	3	27	1	0	0	0	0	0	0	0	1	697	291	11	4		4	ANO8	19	17435833	Silent	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	9693854	17435833	41693150	111	4392											
RHPN2	85415	hgsc.bcm.edu	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	7	9	9	16	2	1	1	1	1	0	0	3	2	3	1	4	0	4	5	4	0	1	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	10	2	26	2	.	0	T	33517507	C	T	33517507	3	4	27	1	0	0	0	0	1	0	0	0	13401	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	16081674	33517507	25611476	112	4393											
DMKN	93099	bcgsc.ca	37	chr19	36002411	36002412	+	Missense_Mutation	DNP	TG	TG	CA																															gccgccactgctgctgccacTgctgctgccaccactgctgc																								novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DMKN	NM_001126058	exon5	c.C819T	p.S274G	GCCACTGCTGCTG	.	50	5	66	0	.	116	CA	36002412	TG	CA	36002411	3	2	27	1	0	0	0	0	1	0	0	0	4610	1580	55	4	975	4	DMKN	19	36002411	Missense_Mutation	DNP	TG	TCGA-YR-A95A-01A-12D-A417-09	2484904	36002411	23126572	113	4394											
MARK4	57787	ucsc.edu	37	chr19	45774944	45774944	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	cctcgtcagcggctccctgcCcttcgacgggcacaacctca	6	7	9	19	4	2	0	2	0	0	0	5	1	3	0	4	2	3	2	4	2	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	MARK4	NM_001199867	exon8	c.C764T	p.P255L	CCCTGCCCTTCGA	.	34	4	44	0	.	132	T	45774944	C	T	45774944	3	4	27	1	0	0	0	0	1	0	0	0	9365	623	22	3	794	3	MARK4	19	45774944	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	9772533	45774944	13354039	114	4395											
ZNF175	7728	hgsc.bcm.edu	37	chr19	52090212	52090212	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttgaagctgaacctaGaagtgaacggtcagaatgaa	17	8	11	5	1	1	6	1	4	0	2	1	6	1	6	1	1	3	2	1	1	8	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ZNF175,colon,carcinoma,0,1	ZNF175	NM_007147	exon5	c.G628T	p.E210X	AACCTAGAAGTGA	.	43	2	49	0	.	0	T	52090212	G	T	52090212	4	4	27	1	0	0	0	0	0	1	0	0	17803	943	33	3	642	3	ZNF175	19	52090212	Nonsense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	6315268	52090212	7038771	115	4396											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54664886	54664886	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	caggaagatgctgtaaagcaGgggaacgctggagatggcca	13	5	16	7	1	0	2	0	0	0	2	0	5	0	4	1	5	3	4	1	5	4	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001145303	exon12	c.C1816G	p.L606V	AAAGCAGGGGAAC	.	38	16	56	0	.	.	C	54664886	G	C	54664886	3	2	27	1	0	0	0	0	1	0	0	0	16047	991	35	5	338	5	TMC4	19	54664886	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	2574674	54664886	4464097	116	4397											
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	58596277	58596277	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggcgtagcgcttccggccGccatggctgctgtggtgctc	3	9	15	14	4	0	0	0	0	0	0	2	0	1	0	3	4	3	5	3	4	1	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001145542	exon7	c.C1476T	p.G492G	CCGGCCGCCATGG	.	42	17	65	0	.	.	A	58596277	G	A	58596277	2	1	27	1	0	0	0	0	0	0	0	1	18271	1074	38	1		1	ZSCAN18	19	58596277	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	3931391	58596277	532706	117	4398											
ZNF132	7691	hgsc.bcm.edu	37	chr19	58945596	58945596	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaggatttaccacattgactGcactcataaggtcttacctg	12	12	7	10	0	2	1	1	1	1	0	2	2	2	2	2	2	3	1	2	2	4	5	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003433	exon3	c.C1215T	p.C405C	TTGACTGCACTCA	.	32	4	40	0	.	.	A	58945596	G	A	58945596	2	1	27	1	0	0	0	0	0	0	0	1	17780	1311	46	3		3	ZNF132	19	58945596	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	349319	58945596	183387	118	4399											
SIGLEC1	6614	bcgsc.ca	37	chr20	3687244	3687244	+	Silent	SNP	G	A	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taccagatggccgtgatgccGtcgggcacctccacgtcggc	6	7	13	15	5	0	2	0	1	0	1	3	2	1	2	5	3	2	1	5	3	1	1	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SIGLEC1,NS,neuroblastoma,-2,1	SIGLEC1	NM_023068	exon2	c.C159T	p.D53D	GATGCCGTCGGGC	.	52	4	60	0	.	210	A	3687244	A	A	3687244	2	1	27	1	0	0	0	0	0	0	0	1	14360	1136	40	1		1	SIGLEC1	20	3687244	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		3687244	59338276	119	4400											
SYN3	8224	hgsc.bcm.edu	37	chr22	33376642	33376642	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccacctacctgctccactcgGatctcaatctctccattcac	8	11	3	19	1	3	0	2	0	2	0	8	1	5	1	5	1	2	1	5	1	2	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SYN3,caecum,carcinoma,0,1	SYN3	NM_001135774	exon3	c.C357A	p.I119I	CACTCGGATCTCA	.	28	3	57	0	.	0	T	33376642	G	T	33376642	2	4	27	1	0	0	0	0	0	0	0	1	15499	1164	41	3		3	SYN3	22	33376642	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		33376642	17927924	120	4401											
KCNJ4	3761	hgsc.bcm.edu	37	chr22	38824085	38824085	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttgacgaagcggttgCggcgcttccgccggggcacg	4	9	15	13	7	2	1	0	1	2	0	3	2	3	1	2	4	2	3	2	4	1	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KCNJ4,NS,carcinoma,0,1	KCNJ4	NM_004981	exon2	c.G53A	p.R18H	CGGTTGCGGCGCT	.	32	2	40	0	.	0	T	38824085	C	T	38824085	3	4	27	1	0	0	0	0	1	0	0	0	8097	768	27	1	1288	1	KCNJ4	22	38824085	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	5447443	38824085	12480481	121	4402											
MPPED1	758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	43870630	43870630	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctgcaggcagcctgccctacGagtacaagatcgtgatcgca	10	7	11	13	3	0	2	0	1	0	1	2	3	0	2	2	1	5	4	2	1	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001044370	exon4	c.G421A	p.E141K	CCCTACGAGTACA	.	13	5	15	0	.	.	A	43870630	G	A	43870630	3	1	27	1	0	0	0	0	1	0	0	0	9790	1059	37	1	431	1	MPPED1	22	43870630	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	5046545	43870630	7433936	122	4403											
CDKL5	6792	hgsc.bcm.edu;bcgsc.ca	37	chrX	18638035	18638035	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagcaactcaaggaaaaagaGaagcaaggatttttcaggtc	17	7	11	6	0	2	1	2	0	0	1	3	5	2	3	0	3	3	2	0	3	6	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003159	exon16	c.G2325T	p.E775D	AAAAGAGAAGCAA	.	80	4	126	0	.	.	T	18638035	G	T	18638035	3	4	27	1	0	0	0	0	1	0	0	0	3179	933	33	3	2383	3	CDKL5	23	18638035	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09		18638035	136632525	123	4404											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50659359	50659359	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gttgggatcactggatcattGctccccctttctacacccca	7	12	7	15	0	3	0	2	0	1	0	4	2	4	2	4	2	2	2	4	2	1	4	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005448	exon2	c.G931T	p.A311S	ATCATTGCTCCCC	.	20	16	45	0	.	.	T	50659359	G	T	50659359	3	4	27	1	0	0	0	0	1	0	0	0	1457	1319	46	3	937	3	BMP15	23	50659359	Missense_Mutation	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	32021324	50659359	104611201	124	4405											
PJA1	64219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	68382847	68382847	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgaactctcgctgtcgtcccAactacgacgagtagtggaaa	11	8	10	12	5	1	0	0	0	1	0	4	4	2	1	1	1	3	2	1	1	5	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_145119	exon2	c.T235C	p.W79R	CGTCCCAACTACG	.	20	14	35	0	.	.	G	68382847	A	G	68382847	3	3	27	1	0	0	0	0	1	0	0	0	12009	130	5	4	1700	4	PJA1	23	68382847	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	17723488	68382847	86887713	125	4406											
PHKA1	5255	hgsc.bcm.edu	37	chrX	71825199	71825199	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagtcgaaacatttcagCaaagaggccaggctgggttc	12	8	12	9	2	1	1	1	0	0	1	4	3	1	1	1	3	2	3	1	3	3	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_002637	exon25	c.G2737T	p.A913S	TTTCAGCAAAGAG	.	38	4	41	0	.	.	A	71825199	C	A	71825199	3	1	27	1	0	0	0	0	1	0	0	0	11891	710	25	3	966	3	PHKA1	23	71825199	Missense_Mutation	SNP	C	TCGA-YR-A95A-01A-12D-A417-09	3442352	71825199	83445361	126	4407											
CYSLTR1	10800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	77529104	77529104	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgataggtttttatgaggAcatagagcacaaagccattg	13	12	11	5	0	0	3	0	2	0	1	0	4	0	4	1	2	2	2	1	2	4	6	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_006639	exon3	c.T140C	p.V47A	ATGAGGACATAGA	.	18	14	42	0	.	.	G	77529104	A	G	77529104	3	3	27	1	0	0	0	0	1	0	0	0	4224	275	10	4	877	4	CYSLTR1	23	77529104	Missense_Mutation	SNP	A	TCGA-YR-A95A-01A-12D-A417-09	5703905	77529104	77741456	127	4408											
DIAPH2	1730	bcgsc.ca	37	chrX	96212895	96212895	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cctccattgccaggtgtaggGccgcctccaccaccacccgc	6	6	9	20	2	0	0	0	0	0	0	2	0	2	0	9	2	1	1	9	2	1	2	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DIAPH2	NM_007309	exon16	c.G1683A	p.G561G	TGTAGGGCCGCCT	.	49	4	77	0	.	148	A	96212895	A	A	96212895	2	1	27	1	0	0	0	0	0	0	0	1	4547	1190	42	3		3	DIAPH2	23	96212895	Silent	SNP	G	TCGA-YR-A95A-01A-12D-A417-09	18683791	96212895	59057665	128	4409											
ABCD1	215	ucsc.edu	37	chrX	153006141	153006141	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaagccatcctggacgtcgTgcacctgcaccacatcctgc	8	7	10	16	2	0	0	0	0	0	0	3	2	2	2	5	2	4	2	5	2	1	0	rs79383557	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ABCD1	NM_000033	exon7	c.T1748A	p.V583E	ACGTCGTGCACCT	.	39	10	22	3	.	59	A	153006141	T	A	153006141	3	1	27	1	0	0	0	0	1	0	0	0	60	1696	59	5	1774	5	ABCD1	23	153006141	Missense_Mutation	SNP	T	TCGA-YR-A95A-01A-12D-A417-09	56793246	153006141	2264419	129	4410											
ARID1A	8289	broad.mit.edu;bcgsc.ca	37	chr1	27101384	27101394	+	Frame_Shift_Del	DEL	GGTCCCTCTGC	GGTCCCTCTGC	-																															gcacacgccagcccccatatGgtccctctgcccctgtgccc																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ARID1A	NM_006015	exon18	c.4666_4676del	p.1556_1559del	CCATATGGTCCCT	.	25	8	48	0	.	842	-	27101394	GGTCCCTCTGC	-	27101384	7	5	28	1	0	1	0	1	0	0	0	0	910	1348	47	0	4736	0	ARID1A	1	27101384	Frame_Shift_Del	DEL	GGTCCCTCTGC	TCGA-ZD-A8I3-01A-11D-A417-09		27101384	222149237	1	4411											
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	66713147	66713147	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ccactttctctttaagctttGatgtggaaaatggcccttcc	8	15	7	11	0	1	1	0	1	1	0	3	2	2	2	3	2	1	1	3	2	3	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	PDE4B_ENST00000423207,NS,carcinoma,0,2	PDE4B_ENST00000423207	NM_001037341	exon4	c.G286C	p.D96H	AGCTTTGATGTGG	.	23	6	38	0	.	0	C	66713147	G	C	66713147	3	2	28	1	0	0	0	0	1	0	0	0	11687	1290	45	5	536	5	PDE4B	1	66713147	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	39611763	66713147	182537474	2	4412											
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111854340	111854340	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttatactgaatttgcagctcGgtaagtcatggactccatgt	10	14	9	8	1	1	1	1	1	0	0	3	2	2	2	1	2	3	3	1	2	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_201653	exon3	c.G55T	p.G19C	CAGCTCGGTAAGT	.	54	19	42	0	.	.	T	111854340	G	T	111854340	3	4	28	1	0	0	0	0	1	0	0	0	3364	1130	39	2	61	2	CHIA	1	111854340	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	45141193	111854340	137396281	3	4413											
NTRK1	4914	hgsc.bcm.edu	37	chr1	156844710	156844710	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccaccaggtctcggtggctGtgggcctggccgtctttgcc	2	10	14	15	2	2	0	0	0	2	0	3	0	2	0	5	5	1	1	5	5	0	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NTRK1_ENST00000392302,caecum,carcinoma,-2,1	NTRK1_ENST00000392302	NM_002529	exon11	c.G1264T	p.V422L	GTGGCTGTGGGCC	.	41	2	28	0	.	-2	T	156844710	G	T	156844710	3	4	28	1	0	0	0	0	1	0	0	0	10754	1377	48	3	1436	3	NTRK1	1	156844710	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	44990370	156844710	92405911	4	4414											
AIM2	9447	hgsc.bcm.edu	37	chr1	159038461	159038461	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagcttgacttagtggctttGgttttgttaccgatttgtat	6	19	10	6	1	0	1	0	1	0	0	0	2	0	1	1	2	2	5	1	2	3	8	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004833	exon3	c.C293A	p.P98Q	GGCTTTGGTTTTG	.	105	5	67	0	.	.	T	159038461	G	T	159038461	3	4	28	1	0	0	0	0	1	0	0	0	429	1348	47	3	754	3	AIM2	1	159038461	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	2193751	159038461	90212160	5	4415											
NR1I3	9970	hgsc.bcm.edu	37	chr1	161202597	161202597	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgaggggaggtcactcacCggaagacgggcaggtcctta	10	6	16	9	2	2	2	2	1	0	1	3	5	3	4	2	6	0	1	2	6	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NR1I3_ENST00000428574,right_upper_lobe,carcinoma,0,2	NR1I3_ENST00000428574	NM_005122	exon5	c.G548T	p.R183L	ACTCACCGGAAGA	.	50	2	33	1	.	0	A	161202597	C	A	161202597	3	1	28	1	0	0	0	0	1	0	0	0	10669	666	23	2	640	2	NR1I3	1	161202597	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	2164136	161202597	88048024	6	4416											
NAV1	89796	hgsc.bcm.edu	37	chr1	201749556	201749556	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtcctgtagctgggatGaaagcagctccatcagtagt	9	11	11	10	0	1	1	1	1	0	0	4	2	4	2	3	1	3	5	3	1	3	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NAV1,NS,carcinoma,0,1	NAV1	NM_020443	exon4	c.G1234T	p.E412X	TGGGATGAAAGCA	.	41	2	28	0	.	0	T	201749556	G	T	201749556	4	4	28	1	0	0	0	0	0	1	0	0	10231	1291	45	3	1305	3	NAV1	1	201749556	Nonsense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	40546959	201749556	47501065	7	4417											
FAM72A	729533	broad.mit.edu	37	chr1	206145504	206145504	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tccatgtagttcctgtcttcTttcctgcaacaacggacact	8	14	6	13	1	2	0	0	0	2	0	5	1	5	1	3	1	3	3	3	1	3	4	rs55683315	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	FAM72A,NS,carcinoma,0,1	FAM72A	NM_001123168	exon3	c.T281C	p.L94P	GTCTTCTTTCCTG	.	193	6	162	1	.	9	C	206145504	T	C	206145504	3	2	28	1	0	0	0	0	1	0	0	0	5649	1609	56	4	291	4	FAM72A	1	206145504	Missense_Mutation	SNP	T	TCGA-ZD-A8I3-01A-11D-A417-09	4395948	206145504	43105117	8	4418											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235331898	235331898	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggacattgacggttcagctAaagttaacataacagcagct	14	10	9	8	1	1	1	1	1	0	0	1	2	1	2	0	2	5	5	0	2	4	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_016374	exon24	c.T3881C	p.L1294S	TCAGCTAAAGTTA	.	87	12	72	0	.	.	G	235331898	A	G	235331898	3	3	28	1	0	0	0	0	1	0	0	0	917	372	13	4	61	4	ARID4B	1	235331898	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	29186394	235331898	13918723	9	4419											
ANTXR1	84168	hgsc.bcm.edu;bcgsc.ca	37	chr2	69420523	69420523	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggatatgatcgtgtgtctgtGatgcgtccacagccaggaga	9	10	14	8	2	1	3	0	2	1	1	3	5	2	4	2	2	2	0	2	2	1	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_032208	exon17	c.G1410T	p.V470V	GTCTGTGATGCGT	.	56	4	53	0	.	.	T	69420523	G	T	69420523	2	4	28	1	0	0	0	0	0	0	0	1	705	1277	45	3		3	ANTXR1	2	69420523	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		69420523	173778850	10	4420											
ALMS1	7840	hgsc.bcm.edu	37	chr2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atggccgggcgagctggaggAggaggaggaggaggaggagg	10	2	25	4	2	0	0	0	0	0	0	0	9	0	8	1	11	1	1	1	11	0	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	24	6	12	0	.	.	T	73613037	A	T	73613037	3	4	28	1	0	0	0	0	1	0	0	0	531	304	11	5	43	5	ALMS1	2	73613037	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	4192514	73613037	169586336	11	4421											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	80808879	80808879	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actttgagcaggaagattatGatgtgcgtagcaggacaagt	13	10	13	5	1	0	3	0	2	0	1	0	5	0	5	0	2	3	3	0	2	4	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001164883	exon14	c.G1942T	p.D648Y	GATTATGATGTGC	.	41	4	26	0	.	.	T	80808879	G	T	80808879	3	4	28	1	0	0	0	0	1	0	0	0	4037	1290	45	3	1784	3	CTNNA2	2	80808879	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	7195842	80808879	162390494	12	4422											
TMEM177	80775	hgsc.bcm.edu	37	chr2	120439254	120439254	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gagaagctgtatacacccagCgggaacatcgtccccagaca	13	5	10	13	2	0	2	0	0	0	2	2	4	1	3	3	1	4	2	3	1	4	2	rs150982620	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TMEM177,NS,carcinoma,0,1	TMEM177	NM_030577	exon2	c.C825T	p.S275S	ACCCAGCGGGAAC	.	22	2	16	0	.	0	T	120439254	C	T	120439254	2	4	28	1	0	0	0	0	0	0	0	1	16154	767	27	1		1	TMEM177	2	120439254	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	39630375	120439254	122760119	13	4423											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141812821	141812821	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggatcgacttcacatgcatgGcttctgactacaacaaataa	14	10	7	10	1	2	1	1	1	1	0	3	3	2	2	0	2	3	2	0	2	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018557	exon10	c.C1416G	p.S472R	TGCATGGCTTCTG	.	37	12	39	0	.	.	C	141812821	G	C	141812821	3	2	28	1	0	0	0	0	1	0	0	0	9000	1194	42	5	12711	5	LRP1B	2	141812821	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	21373567	141812821	101386552	14	4424											
TANK	10010	bcgsc.ca	37	chr2	162081140	162081140	+	Splice_Site	SNP	A	T	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	aaatgttgatttttttttttAggggtaatatagagaagact	13	18	9	1	0	0	3	0	1	0	2	0	4	0	3	0	2	0	2	0	2	6	10	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	TANK	NM_004180	exon6	c.405-2A>T	.	TTTTTTAGGGGTA	.	225	8	190	1	.	35	T	162081140	T	T	162081140	5	4	28	1	0	0	0	0	0	0	1	0	15603	434	15	5	454	5	TANK	2	162081140	Splice_Site	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	20268319	162081140	81118233	15	4425											
HOXD9	3235	hgsc.bcm.edu;bcgsc.ca	37	chr2	176988855	176988855	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atctggtttcagaaccgtagGatgaaaatgaaaaagatgag	17	9	11	4	1	2	5	1	3	1	2	2	6	2	6	1	2	1	2	1	2	6	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_014213	exon2	c.G1011T	p.R337S	CCGTAGGATGAAA	.	65	4	66	0	.	.	T	176988855	G	T	176988855	3	4	28	1	0	0	0	0	1	0	0	0	7367	1165	41	3	1017	3	HOXD9	2	176988855	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	14907715	176988855	66210518	16	4426											
CASP8	841	hgsc.bcm.edu	37	chr2	202149565	202149565	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgaccacgacctttgaagagCttcattttgagatcaagccc	11	11	8	11	1	2	4	2	3	0	2	2	6	2	4	3	0	2	1	3	0	2	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	CASP8_ENST00000358485,NS,carcinoma,0,3	CASP8_ENST00000358485	NM_001080125	exon8	c.C1006A	p.L336I	GAAGAGCTTCATT	.	34	2	24	0	.	0	A	202149565	C	A	202149565	3	1	28	1	0	0	0	0	1	0	0	0	2695	797	28	3	1136	3	CASP8	2	202149565	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	25160710	202149565	41049808	17	4427											
ABCA12	26154	hgsc.bcm.edu	37	chr2	215865498	215865498	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgggagttccttccaGtttgcaattcaatgattgct	7	17	8	9	0	1	1	1	1	0	0	4	2	4	2	3	1	2	4	3	1	2	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ABCA12,colon,carcinoma,0,1	ABCA12	NM_173076	exon22	c.C3110A	p.T1037N	CTTCCAGTTTGCA	.	57	3	30	0	.	0	T	215865498	G	T	215865498	3	4	28	1	0	0	0	0	1	0	0	0	30	1029	36	3	4805	3	ABCA12	2	215865498	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	13715933	215865498	27333875	18	4428											
HJURP	55355	hgsc.bcm.edu	37	chr2	234762542	234762542	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccaccggggtgtcctcGaagggctggttgtactgcgg	5	9	16	11	3	0	0	0	0	0	0	2	1	1	0	3	5	3	4	3	5	2	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	HJURP,NS,carcinoma,0,1	HJURP	NM_018410	exon2	c.C132A	p.F44L	GTCCTCGAAGGGC	.	32	2	29	0	.	0	T	234762542	G	T	234762542	3	4	28	1	0	0	0	0	1	0	0	0	7230	1049	37	2	2146	2	HJURP	2	234762542	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	18897044	234762542	8436831	19	4429											
LRRFIP1	9208	hgsc.bcm.edu	37	chr2	238683054	238683054	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaatcagcggctgaaaatgcAgaaaaaatagaagatgaact	21	6	9	5	1	1	5	1	2	0	3	1	5	1	5	0	1	3	2	0	1	9	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001137550	exon23	c.A1761G	p.A587A	AAATGCAGAAAAA	.	87	4	90	0	.	.	G	238683054	A	G	238683054	2	3	28	1	0	0	0	0	0	0	0	1	9072	175	7	4		4	LRRFIP1	2	238683054	Silent	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	3920512	238683054	4516319	20	4430											
GRM7	2917	hgsc.bcm.edu	37	chr3	7494394	7494394	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcacgcccttcaccacatGaacaaggatctctgtgctga	10	9	8	14	1	3	2	2	2	1	0	4	3	3	3	2	1	2	2	2	1	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	GRM7,rectum,carcinoma,0,1	GRM7	NM_000844	exon6	c.G1275T	p.M425I	CCACATGAACAAG	.	40	2	58	0	.	0	T	7494394	G	T	7494394	3	4	28	1	0	0	0	0	1	0	0	0	6843	1290	45	3	1297	3	GRM7	3	7494394	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		7494394	190528036	21	4431											
WDR52	55779	hgsc.bcm.edu	37	chr3	113063555	113063555	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atcactttccagtggatctcGaaatctgaaaaaataaaaca	18	10	5	8	1	3	1	1	1	2	0	5	3	4	2	1	1	1	0	1	1	6	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	WDR52_ENST00000393845,NS,carcinoma,0,1	WDR52_ENST00000393845	NM_001164496	exon23	c.C3070T	p.R1024X	GATCTCGAAATCT	.	48	2	38	0	.	0	A	113063555	G	A	113063555	4	1	28	1	0	0	0	0	0	1	0	0	17364	1066	37	1	2546	1	WDR52	3	113063555	Nonsense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	105569161	113063555	84958875	22	4432											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376107	113376107	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgccctgcttgttgttgttgCtgttgctgctgctgctgctg	0	18	13	10	0	0	0	0	0	0	0	0	0	0	0	1	0	8	11	1	0	0	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KIAA2018,colon,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC	.	17	3	18	1	.	0	T	113376107	C	T	113376107	2	4	28	1	0	0	0	0	0	0	0	1	8310	796	28	3		3	KIAA2018	3	113376107	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	312552	113376107	84646323	23	4433											
ARMC8	25852	hgsc.bcm.edu	37	chr3	137960639	137960639	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttcagacattaccttgtttGgttcgaatgtgcagtaagga	10	15	10	6	1	1	1	1	0	0	1	2	3	1	2	1	2	2	4	1	2	3	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ARMC8_ENST00000481646,NS,carcinoma,0,3	ARMC8_ENST00000481646	NM_213654	exon12	c.G810T	p.L270F	TTGTTTGGTTCGA	.	41	2	34	0	.	0	T	137960639	G	T	137960639	3	4	28	1	0	0	0	0	1	0	0	0	956	1339	47	3	852	3	ARMC8	3	137960639	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	24584532	137960639	60061791	24	4434											
KCNAB1	7881	hgsc.bcm.edu	37	chr3	156175301	156175301	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gttaacctctttgatactgcCgaagtctatgctgctggaaa	10	13	9	9	1	2	1	0	1	2	0	2	3	2	2	2	1	5	3	2	1	5	4	rs146234419	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KCNAB1_ENST00000490337,NS,carcinoma,+2,3	KCNAB1_ENST00000490337	NM_172160	exon4	c.C417A	p.A139A	TACTGCCGAAGTC	.	36	2	49	0	.	+2	A	156175301	C	A	156175301	2	1	28	1	0	0	0	0	0	0	0	1	8053	639	23	2		2	KCNAB1	3	156175301	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	18214662	156175301	41847129	25	4435											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195512268	195512268	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagaggcgtggtGtcacctgtggatactgagga	10	8	17	6	1	1	3	1	2	0	1	1	6	1	6	1	5	1	0	1	5	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018406	exon2	c.C6183T	p.D2061D	CGTGGTGTCACCT	.	124	19	148	0	.	.	A	195512268	G	A	195512268	2	1	28	1	0	0	0	0	0	0	0	1	10026	1368	48	3		3	MUC4	3	195512268	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	39336967	195512268	2510162	26	4436											
DRD5	1816	hgsc.bcm.edu	37	chr4	9784882	9784882	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caaggaaatcgcagctgcctAcatccacatgatgcccaacg	13	6	8	14	2	0	1	0	1	0	0	2	2	1	2	3	1	5	2	3	1	4	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DRD5,NS,carcinoma,0,1	DRD5	NM_000798	exon1	c.A1229G	p.Y410C	CTGCCTACATCCA	.	33	3	37	1	.	0	G	9784882	A	G	9784882	3	3	28	1	0	0	0	0	1	0	0	0	4786	391	14	4	1231	4	DRD5	4	9784882	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09		9784882	181369394	27	4437											
KDR	3791	hgsc.bcm.edu;bcgsc.ca	37	chr4	55953862	55953862	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtgaggtaggcagagagaGtccagaatcctcttccatgc	11	8	13	9	0	1	4	0	1	1	3	4	5	4	4	3	3	1	2	3	3	2	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002253	exon27	c.C3574A	p.L1192I	GAGAGAGTCCAGA	.	80	5	68	0	.	.	T	55953862	G	T	55953862	3	4	28	1	0	0	0	0	1	0	0	0	8182	1029	36	3	512	3	KDR	4	55953862	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	46168980	55953862	135200414	28	4438											
ANK2	287	hgsc.bcm.edu	37	chr4	114271399	114271400	+	Frame_Shift_Ins	INS	-	-	A																															tcagatcgatatgacatcagINSaaaaaagtaagaatttaaag																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001148	exon37	c.4420_4421insA	p.E1474fs	ACATCAGAAAAAA	.	127	42	97	0	.	.	A	114271400	-	A	114271399	7	5	28	1	0	1	1	0	0	0	0	0	617	943	33	0	4631	0	ANK2	4	114271399	Frame_Shift_Ins	INS	-	TCGA-ZD-A8I3-01A-11D-A417-09	58317537	114271399	76882877	29	4439											
TLL1	7092	hgsc.bcm.edu	37	chr4	166999170	166999170	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	atcagcgccactcctggccaCcgaatcaaattagtaagtga	13	8	8	12	2	2	1	2	1	0	0	3	2	3	1	4	1	1	1	4	1	4	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TLL1,right_lower_lobe,carcinoma,0,1	TLL1	NM_012464	exon18	c.C2430A	p.H810Q	TGGCCACCGAATC	.	41	2	45	0	.	0	A	166999170	C	A	166999170	3	1	28	1	0	0	0	0	1	0	0	0	16005	506	18	3	2500	3	TLL1	4	166999170	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	52727771	166999170	24155106	30	4440											
FAM173B	134145	hgsc.bcm.edu;bcgsc.ca	37	chr5	10227607	10227607	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gtacagggcctcttttcacgGcctctaaaagtgcttgcatc	8	12	9	12	1	3	0	1	0	2	0	4	0	3	0	2	2	3	3	2	2	3	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_199133	exon5	c.C648A	p.G216G	TTCACGGCCTCTA	.	58	4	44	0	.	.	T	10227607	G	T	10227607	2	4	28	1	0	0	0	0	0	0	0	1	5524	1190	42	3		3	FAM173B	5	10227607	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		10227607	170687653	31	4441											
CDH9	1007	hgsc.bcm.edu	37	chr5	26890641	26890641	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgaataccaaaaataCggtccatatcagtatgccga	15	9	8	9	2	1	2	1	2	0	0	2	3	2	2	3	1	3	1	3	1	7	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_016279	exon8	c.G1286A	p.R429H	AAAATACGGTCCA	.	94	4	93	0	.	.	T	26890641	C	T	26890641	3	4	28	1	0	0	0	0	1	0	0	0	3139	536	19	1	1103	1	CDH9	5	26890641	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	16663034	26890641	154024619	32	4442											
FARS2	10667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	5545474	5545474	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ttagaaaggctagccatgatCctctacgacatccctgatat	12	11	7	11	1	1	3	0	2	1	1	3	4	3	3	3	1	2	1	3	1	5	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_006567	exon5	c.C966T	p.I322I	CATGATCCTCTAC	.	61	26	72	0	.	.	T	5545474	C	T	5545474	2	4	28	1	0	0	0	0	0	0	0	1	5711	845	30	3		3	FARS2	6	5545474	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		5545474	165569593	33	4443											
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	33289677	33289677	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcgtcatcatcatccagcAcgatgatgctgttagcggtg	8	12	10	11	3	3	1	3	1	0	0	5	2	4	1	1	1	3	3	1	1	1	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001141970	exon2	c.T62A	p.V21E	TCCAGCACGATGA	.	15	8	15	0	.	.	T	33289677	A	T	33289677	3	4	28	1	0	0	0	0	1	0	0	0	4267	159	6	5	2224	5	DAXX	6	33289677	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	27744203	33289677	137825390	34	4444											
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	35479510	35479510	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gggtccctgaggaacctggcGtagaccgtctgcggcgcccg	5	6	16	14	5	1	2	0	1	1	1	2	3	2	3	4	4	2	1	4	4	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_003322	exon4	c.C264T	p.Y88Y	CCTGGCGTAGACC	.	55	18	45	0	.	.	A	35479510	G	A	35479510	2	1	28	1	0	0	0	0	0	0	0	1	16835	1140	40	1		1	TULP1	6	35479510	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	2189833	35479510	135635557	35	4445											
PKHD1	5314	broad.mit.edu;bcgsc.ca	37	chr6	51890257	51890257	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gaaggaagctccaggcaaggGgtcaccctccaggctaacct	11	5	12	13	0	1	0	1	0	0	0	3	2	3	1	4	5	2	3	4	5	4	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PKHD1	NM_170724	exon32	c.C4351G	p.P1451A	GCAAGGGGTCACC	.	34	10	32	0	.	927	C	51890257	G	C	51890257	3	2	28	1	0	0	0	0	1	0	0	0	12019	1232	43	5	8056	5	PKHD1	6	51890257	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	16410747	51890257	119224810	36	4446											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	106991412	106991412	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggaggtgaaacagaagaggCgactggagacgatcatttgc	13	6	16	6	2	1	4	1	1	0	3	1	8	1	5	0	4	2	0	0	4	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001624	exon9	c.C3755G	p.A1252G	AAGAGGCGACTGG	.	40	22	63	0	.	.	G	106991412	C	G	106991412	3	3	28	1	0	0	0	0	1	0	0	0	427	768	27	5	3789	5	AIM1	6	106991412	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	55101155	106991412	64123655	37	4447											
ZNF12	7559	broad.mit.edu	37	chr7	6731408	6731408	+	Frame_Shift_Del	DEL	T	T	-																															tgctgacttctgcgagaaggTtttcccacagtcatgacaaa																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ZNF12	NM_016265	exon5	c.1165delA	p.T389fs	AGAAGGTTTTCCC	.	6	2	26	0	.	53	-	6731408	T	-	6731408	7	5	28	1	0	1	0	1	0	0	0	0	17776	1725	60	0	932	0	ZNF12	7	6731408	Frame_Shift_Del	DEL	T	TCGA-ZD-A8I3-01A-11D-A417-09		6731408	152407255	38	4448											
ZMIZ2	83637	hgsc.bcm.edu	37	chr7	44804019	44804019	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccatctctctacagtGctttgacctggagtcgtacc	6	14	7	14	1	3	1	0	1	3	0	6	2	4	2	3	1	3	2	3	1	2	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZMIZ2,NS,carcinoma,0,1	ZMIZ2	NM_031449	exon14	c.G1862T	p.C621F	TACAGTGCTTTGA	.	18	2	29	0	.	0	T	44804019	G	T	44804019	3	4	28	1	0	0	0	0	1	0	0	0	17755	1333	46	3	1912	3	ZMIZ2	7	44804019	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	38072611	44804019	114334644	39	4449											
ABCA13	154664	hgsc.bcm.edu	37	chr7	48327660	48327660	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atacaaggggtcactttggcGcaggaccacttccaggtttg	9	10	12	10	1	1	0	1	0	0	0	2	1	2	1	2	5	1	2	2	5	2	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ABCA13_ENST00000435803,NS,carcinoma,0,2	ABCA13_ENST00000435803	NM_152701	exon20	c.G8940A	p.A2980A	TTTGGCGCAGGAC	.	47	2	35	0	.	0	A	48327660	G	A	48327660	2	1	28	1	0	0	0	0	0	0	0	1	31	1074	38	1		1	ABCA13	7	48327660	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	3523641	48327660	110811003	40	4450											
TRIM56	81844	hgsc.bcm.edu	37	chr7	100732027	100732027	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgggagcccagcccagccctGgggccgaatctggacggctc	6	4	15	16	3	1	0	0	0	1	0	2	3	1	2	4	5	3	1	4	5	1	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TRIM56_ENST00000306085,NS,carcinoma,0,2	TRIM56_ENST00000306085	NM_030961	exon3	c.G1434T	p.L478L	AGCCCTGGGGCCG	.	29	2	32	0	.	0	T	100732027	G	T	100732027	2	4	28	1	0	0	0	0	0	0	0	1	16591	1335	47	3		3	TRIM56	7	100732027	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	52404367	100732027	58406636	41	4451											
GALNTL5	168391	hgsc.bcm.edu	37	chr7	151699823	151699823	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttctggtgttcctggacaGccactgtgaggtgaacagag	8	11	14	8	0	1	3	0	2	1	1	2	4	2	4	2	3	2	2	2	3	1	2	rs149988530	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	GALNTL5,NS,carcinoma,0,1	GALNTL5	NM_145292	exon6	c.G683T	p.S228I	TGGACAGCCACTG	.	44	2	42	0	.	0	T	151699823	G	T	151699823	3	4	28	1	0	0	0	0	1	0	0	0	6264	971	34	3	701	3	GALNTL5	7	151699823	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	50967796	151699823	7438840	42	4452											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	2976042	2976042	+	Nonsense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatactgattgccccacgctGtaatccgagttgatcatgta	10	12	9	10	2	1	2	1	2	0	0	2	4	2	2	3	0	2	4	3	0	3	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_033225	exon42	c.C6309G	p.Y2103X	CACGCTGTAATCC	.	72	14	80	0	.	.	C	2976042	G	C	2976042	4	2	28	1	0	0	0	0	0	1	0	0	3969	1372	48	5	4501	5	CSMD1	8	2976042	Nonsense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		2976042	143387980	43	4453											
WHSC1L1	54904	hgsc.bcm.edu	37	chr8	38157087	38157087	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgaactgaacatggggtctGaatggtcctgaactatcagc	12	10	11	8	0	2	4	1	4	1	0	3	4	3	4	1	3	4	0	1	3	5	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_023034	exon15	c.C2633A	p.S878X	GGGTCTGAATGGT	.	83	3	100	0	.	.	T	38157087	G	T	38157087	4	4	28	1	0	0	0	0	0	1	0	0	17423	1294	45	3	1720	3	WHSC1L1	8	38157087	Nonsense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	35181045	38157087	108206935	44	4454											
RB1CC1	9821	hgsc.bcm.edu	37	chr8	53570077	53570077	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcattcgtctactgtctatcGcattgataactgatgaataa	12	14	7	8	2	2	3	0	3	2	0	4	3	2	3	0	0	2	2	0	0	5	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	RB1CC1,colon,carcinoma,0,2	RB1CC1	NM_001083617	exon15	c.C2312A	p.A771E	TCTATCGCATTGA	.	31	2	43	0	.	0	T	53570077	G	T	53570077	3	4	28	1	0	0	0	0	1	0	0	0	13151	1087	38	2	2512	2	RB1CC1	8	53570077	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	15412990	53570077	92793945	45	4455											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	54852270	54852270	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgcttctgctggtgctgctgTtgtagctgctcgtggtaagg	3	15	15	8	1	1	0	0	0	1	0	2	0	1	0	0	3	6	9	0	3	2	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_170587	exon3	c.T645A	p.C215X	CTGCTGTTGTAGC	.	39	14	24	0	.	.	A	54852270	T	A	54852270	4	1	28	1	0	0	0	0	0	1	0	0	13353	1731	60	5	728	5	RGS20	8	54852270	Nonsense_Mutation	SNP	T	TCGA-ZD-A8I3-01A-11D-A417-09	1282193	54852270	91511752	46	4456											
INTS8	55656	broad.mit.edu	37	chr8	95841228	95841228	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaaatgcaacaggaaaaaGagctaacagaaaacattttg	21	7	7	6	0	1	2	1	0	0	2	1	3	1	3	0	1	5	2	0	1	7	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	INTS8	NM_017864	exon5	c.G544T	p.E182X	GAAAAAGAGCTAA	.	37	3	29	0	.	92	T	95841228	G	T	95841228	4	4	28	1	0	0	0	0	0	1	0	0	7828	943	33	3	562	3	INTS8	8	95841228	Nonsense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	40988958	95841228	50522794	47	4457											
TSNARE1	203062	bcgsc.ca	37	chr8	143396383	143396383	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgcaccactccatagCactgaatggcatctgagagc	10	9	8	14	0	2	2	0	2	2	1	3	3	3	2	3	1	3	3	3	1	2	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	TSNARE1	NM_145003	exon8	c.G1055T	p.C352F	CCATAGCACTGAA	.	19	3	22	0	.	59	A	143396383	A	A	143396383	3	1	28	1	0	0	0	0	1	0	0	0	16691	710	25	3	510	3	TSNARE1	8	143396383	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	47555155	143396383	2967639	48	4458											
GLIS3	169792	broad.mit.edu	37	chr9	4118102	4118102	+	Frame_Shift_Del	DEL	G	G	-																															catgggcatggtaagggggtGgggggcctgggggcggcggc																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GLIS3	NM_001042413	exon4	c.1376delC	p.P459fs	GGGGGTGGGGGGC	.	7	2	10	0	.	152	-	4118102	G	-	4118102	7	5	28	1	0	1	0	1	0	0	0	0	6489	1348	47	0	1448	0	GLIS3	9	4118102	Frame_Shift_Del	DEL	G	TCGA-ZD-A8I3-01A-11D-A417-09		4118102	137095329	49	4459											
GLIS3	169792	bcgsc.ca	37	chr9	4286193	4286193	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggcaggcagatggatgCggctctcagccacgttgttc	8	10	13	10	2	1	1	1	0	1	1	3	2	1	2	1	4	2	5	1	4	1	3	rs200195201	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GLIS3	NM_001042413	exon2	c.G233A	p.R78H	TGGATGCGGCTCT	.	28	4	27	0	C|0.999;T|0.001	152	T	4286193	T	T	4286193	3	4	28	1	0	0	0	0	1	0	0	0	6489	768	27	1	2599	1	GLIS3	9	4286193	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	168091	4286193	136927238	50	4460											
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	21971108	21971108	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagccctcccgggcagcgtCgtgcacgggtcgggtgagag	6	5	18	12	5	0	1	0	1	0	1	3	3	1	1	2	3	3	2	2	3	1	0	rs11552822	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	CDKN2A_ENST00000498124,left_upper_lobe,carcinoma,0,35	CDKN2A_ENST00000498124	NM_058195	exon2	c.G293T	p.R98L	CAGCGTCGTGCAC	.	12	7	21	0	.	0	A	21971108	C	A	21971108	3	1	28	1	0	0	0	0	1	0	0	0	3183	884	31	2	228	2	CDKN2A	9	21971108	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	17684915	21971108	119242323	51	4461											
C9orf72	203228	hgsc.bcm.edu	37	chr9	27566901	27566901	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tagcaccactctctgcatttCgaaggatttctccatttaga	10	14	6	11	1	2	1	0	0	2	1	5	3	2	2	2	1	2	2	2	1	3	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	C9orf72,caecum,carcinoma,0,2	C9orf72	NM_018325	exon2	c.G218A	p.R73Q	GCATTTCGAAGGA	.	37	2	54	0	.	0	T	27566901	C	T	27566901	3	4	28	1	0	0	0	0	1	0	0	0	2513	884	31	1	1271	1	C9orf72	9	27566901	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	5595793	27566901	113646530	52	4462											
UBQLN1	29979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	86297904	86297904	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tagtagcagaaccagatgtaGagttactattaggagttgat	14	12	11	4	0	0	4	0	1	0	3	0	5	0	5	1	1	3	5	1	1	7	7	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_053067	exon3	c.C410A	p.S137Y	GATGTAGAGTTAC	.	38	4	70	0	.	.	T	86297904	G	T	86297904	3	4	28	1	0	0	0	0	1	0	0	0	16957	942	33	3	1395	3	UBQLN1	9	86297904	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	58731003	86297904	54915527	53	4463											
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	chr9	95003186	95003186	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aagattgacatatgcacaagCaggaccaggaagggaagatc	17	5	12	7	0	0	3	0	1	0	2	1	6	0	6	1	3	2	2	1	3	5	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_013417	exon30	c.G3235A	p.A1079T	CACAAGCAGGACC	.	44	4	65	0	.	.	T	95003186	C	T	95003186	3	4	28	1	0	0	0	0	1	0	0	0	7517	710	25	3	573	3	IARS	9	95003186	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	8705282	95003186	46210245	54	4464											
HIATL1	84641	hgsc.bcm.edu	37	chr9	97177491	97177491	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgctgctattgtcatcttcCttgaattctttgcgtggggc	5	17	10	9	1	3	1	1	1	2	0	4	1	4	1	1	2	3	2	1	2	2	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_032558	exon2	c.C160A	p.L54I	ATCTTCCTTGAAT	.	98	4	112	0	.	.	A	97177491	C	A	97177491	3	1	28	1	0	0	0	0	1	0	0	0	7139	681	24	3	166	3	HIATL1	9	97177491	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	2174305	97177491	44035940	55	4465											
MED27	9442	hgsc.bcm.edu	37	chr9	134889833	134889833	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgatttaaaaggccagatgCtagtcctgcatggtactgca	11	11	10	9	0	0	2	0	1	0	1	1	2	1	2	2	2	4	4	2	2	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001253881	exon3	c.G370A	p.A124T	CAGATGCTAGTCC	.	38	3	56	0	.	.	T	134889833	C	T	134889833	3	4	28	1	0	0	0	0	1	0	0	0	9495	797	28	3	589	3	MED27	9	134889833	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	37712342	134889833	6323598	56	4466											
GJD4	219770	bcgsc.ca	37	chr10	35897268	35897268	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgccggaggggagggggctgGcagccccaggcgtacatcca	7	3	18	13	3	0	0	0	0	0	0	1	2	1	2	4	7	2	3	4	7	1	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GJD4	NM_153368	exon2	c.G827A	p.G276D	GGGCTGGCAGCCC	.	55	4	50	0	.	38	A	35897268	A	A	35897268	3	1	28	1	0	0	0	0	1	0	0	0	6461	1203	42	3	833	3	GJD4	10	35897268	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		35897268	99637479	57	4467											
ZNF33B	7582	hgsc.bcm.edu	37	chr10	43089614	43089614	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggtatctgatggaacaagaGggatgaactatcacagaaag	17	7	12	5	0	2	4	1	2	1	2	2	6	2	6	0	3	2	1	0	3	6	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF33B,NS,carcinoma,0,1	ZNF33B	NM_006955	exon5	c.C784A	p.L262I	ACAAGAGGGATGA	.	48	2	46	0	.	0	T	43089614	G	T	43089614	3	4	28	1	0	0	0	0	1	0	0	0	17912	1000	35	3	1556	3	ZNF33B	10	43089614	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	7192346	43089614	92445133	58	4468											
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70645255	70645259	+	Frame_Shift_Del	DEL	ACCCT	ACCCT	-																															agaatccatttacataaatgAccctactgtcaaacccatca																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	ACCCT	ACCCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	STOX1,colon,carcinoma,0,1	STOX1	NM_152709	exon3	c.1702_1706del	p.568_569del	TAAATGACCCTAC	.	44	16	32	0	.	0	-	70645259	ACCCT	-	70645255	7	5	28	1	0	1	0	1	0	0	0	0	15375	275	10	0	1713	0	STOX1	10	70645255	Frame_Shift_Del	DEL	ACCCT	TCGA-ZD-A8I3-01A-11D-A417-09	27555641	70645255	64889492	59	4469											
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72025934	72025934	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acatgttggtgacagtatgcAtgtgccggttcttgagcacg	8	12	13	8	2	1	2	0	2	1	0	1	2	1	2	1	2	3	5	1	2	1	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_022146	exon2	c.T221A	p.M74K	GTATGCATGTGCC	.	31	10	45	0	.	.	T	72025934	A	T	72025934	3	4	28	1	0	0	0	0	1	0	0	0	10624	217	8	5	1082	5	NPFFR1	10	72025934	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	1380679	72025934	63508813	60	4470											
UNC5B	219699	hgsc.bcm.edu	37	chr10	73051326	73051326	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctcctctgctggaccccttaCccagccttaaggtcaaggtc	7	10	8	16	0	2	0	1	0	1	0	4	1	3	1	5	3	3	1	5	3	3	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	UNC5B,colon,carcinoma,0,1	UNC5B	NM_170744	exon10	c.C1432T	p.P478S	CCCTTACCCAGCC	.	64	3	69	0	.	0	T	73051326	C	T	73051326	3	4	28	1	0	0	0	0	1	0	0	0	17052	507	18	3	1470	3	UNC5B	10	73051326	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	1025392	73051326	62483421	61	4471											
NT5C2	22978	hgsc.bcm.edu;bcgsc.ca	37	chr10	104866417	104866417	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaatagaaactaatctctcCacagtaagctcaaaaccaag	18	7	4	12	0	2	1	1	0	1	1	4	1	3	1	3	0	3	2	3	0	8	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_012229	exon5	c.G222T	p.V74V	TCTCTCCACAGTA	.	47	4	44	0	.	.	A	104866417	C	A	104866417	2	1	28	1	0	0	0	0	0	0	0	1	10735	581	21	3		3	NT5C2	10	104866417	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	31815091	104866417	30668330	62	4472											
TACC2	10579	hgsc.bcm.edu;bcgsc.ca	37	chr10	123970434	123970434	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagagccttgtccccaGtggggagaatctagcatctg	10	9	13	9	0	2	3	0	1	2	2	3	5	3	3	3	2	2	1	3	2	3	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_206862	exon9	c.G6494T	p.S2165I	TCCCCAGTGGGGA	.	56	4	69	0	.	.	T	123970434	G	T	123970434	3	4	28	1	0	0	0	0	1	0	0	0	15559	1029	36	3	6596	3	TACC2	10	123970434	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	19104017	123970434	11564313	63	4473											
TUBGCP2	10844	hgsc.bcm.edu	37	chr10	135107110	135107110	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gccactgggaggatcctgtgCaccagctccctgatggacag	8	7	13	13	0	0	1	0	1	0	0	2	4	2	4	4	3	2	2	4	3	0	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TUBGCP2,colon,carcinoma,0,1	TUBGCP2	NM_001256617	exon7	c.G864A	p.V288V	CCTGTGCACCAGC	.	81	3	79	0	.	0	T	135107110	C	T	135107110	2	4	28	1	0	0	0	0	0	0	0	1	16828	697	25	3		3	TUBGCP2	10	135107110	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	11136676	135107110	427637	64	4474											
MUC2	4583	bcgsc.ca	37	chr11	1092615	1092615	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cctccaaccaccactcccagCcctccaaccaccactcccag	10	4	2	25	0	0	0	0	0	0	0	4	0	4	0	10	0	3	0	10	0	2	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C4434T	p.S1478S	TCCCAGCCCTCCA	.	250	19	211	9	.	614	T	1092615	T	T	1092615	2	4	28	1	0	0	0	0	0	0	0	1	10023	738	26	3		3	MUC2	11	1092615	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		1092615	133913901	65	4475			1	6		3	3	609	C		2.587078e-06
MUC2	4583	bcgsc.ca	37	chr11	1093061	1093061	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acccactggcacacagacccCaaccccaacagccatcacca	14	2	4	21	0	1	1	1	0	0	1	1	1	1	1	7	1	3	1	7	1	2	0	rs199518058		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C4880T	p.P1627L	AGACCCCAACCCC	.	272	18	225	4	.	614	T	1093061	T	T	1093061	3	4	28	1	0	0	0	0	1	0	0	0	10023	594	21	3	4998	3	MUC2	11	1093061	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	446	1093061	133913455	66	4476			1	6		3	3	609	C		2.587078e-06
MUC2	4583	bcgsc.ca	37	chr11	1093223	1093223	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cccaacagccatcaccaccaCcactacggtgaccccaaccc	12	3	4	22	1	1	1	1	1	0	0	1	1	1	1	8	1	4	0	8	1	3	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C5042A	p.T1681N	CCACCACCACTAC	.	244	9	150	1	.	614	A	1093223	A	A	1093223	3	1	28	1	0	0	0	0	1	0	0	0	10023	507	18	3	5160	3	MUC2	11	1093223	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	162	1093223	133913293	67	4477			1	6		3	3	609	C		2.587078e-06
OR51I1	390063	broad.mit.edu	37	chr11	5462013	5462013	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcactgcacagatgtgtgaCatgcaggtgttgagtgcctt	9	11	13	8	0	0	3	0	2	0	1	0	3	0	3	1	1	4	4	1	1	0	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	OR51I1	NM_001005288	exon1	c.G732T	p.M244I	GTGTGACATGCAG	.	14	6	14	0	.	66	A	5462013	C	A	5462013	3	1	28	1	0	0	0	0	1	0	0	0	11148	478	17	3	216	3	OR51I1	11	5462013	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	4368790	5462013	129544503	68	4478											
OR8K3	219473	ucsc.edu	37	chr11	56086147	56086147	+	Missense_Mutation	SNP	G	G	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccatgtcctacgaccTctatgtggccatctgtaacc	8	11	7	15	1	3	0	1	0	2	0	4	1	4	0	5	1	3	1	5	1	3	3	rs960193	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	OR8K3,NS,carcinoma,+1,1	OR8K3	NM_001005202	exon1	c.T365A	p.L122H	ACGACCTCTATGT	.	32	16	36	0	G|0.721;T|0.279	92	A	56086147	G	A	56086147	3	1	28	1	0	0	0	0	1	0	0	0	11291	1551	54	5	367	5	OR8K3	11	56086147	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	50624134	56086147	78920369	69	4479											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62292529	62292529	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	atatccacgtcaggaactttCatgtcaccttccacttttgg	9	14	6	12	1	3	0	3	0	0	0	5	1	5	1	3	2	1	0	3	2	2	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001620	exon5	c.G9360C	p.M3120I	AACTTTCATGTCA	.	85	31	88	0	.	.	G	62292529	C	G	62292529	3	3	28	1	0	0	0	0	1	0	0	0	411	826	29	5	8432	5	AHNAK	11	62292529	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	6206382	62292529	72713987	70	4480											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	0	18	14	9	0	0	0	0	0	0	0	0	0	0	0	0	0	9	13	0	0	0	4	rs61749250	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	44	2	34	0	.	0	T	95825254	C	T	95825254	2	4	28	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825254	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	33532725	95825254	39181262	71	4481											
DDI1	414301	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	103908641	103908641	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gacttattttcttcctgaggGagagttgcccttatgctcta	7	16	9	9	0	2	2	0	1	2	1	3	4	3	2	2	1	2	2	2	1	3	7	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001001711	exon1	c.G1091T	p.G364V	CTGAGGGAGAGTT	.	33	4	29	0	.	.	T	103908641	G	T	103908641	3	4	28	1	0	0	0	0	1	0	0	0	4351	1174	41	3	1093	3	DDI1	11	103908641	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	8083387	103908641	31097875	72	4482											
PAFAH1B2	5049	ucsc.edu	37	chr11	117023206	117023206	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctattccgcatgcaGcagaagatattcaaggagat	14	8	10	9	1	1	3	1	0	0	3	2	4	2	3	1	1	4	5	1	1	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PAFAH1B2	NM_001184747	exon2	c.G43A	p.A15T	CATGCAGCAGAAG	.	30	4	18	0	.	19	A	117023206	G	A	117023206	3	1	28	1	0	0	0	0	1	0	0	0	11432	971	34	3	45	3	PAFAH1B2	11	117023206	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	13114565	117023206	17983310	73	4483											
OR6C4	341418	hgsc.bcm.edu	37	chr12	55945614	55945614	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtcatcctcttggccGttgtgactctcatggttact	5	16	10	10	1	3	2	2	2	2	0	5	2	4	2	2	3	1	2	2	3	1	3	rs375998098		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	OR6C4,colon,carcinoma,0,1	OR6C4	NM_001005494	exon1	c.G604A	p.V202I	TTGGCCGTTGTGA	.	24	2	32	0	.	0	A	55945614	G	A	55945614	3	1	28	1	0	0	0	0	1	0	0	0	11240	1145	40	1	606	1	OR6C4	12	55945614	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		55945614	77906281	74	4484											
ESYT1	23344	bcgsc.ca	37	chr12	56524397	56524397	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agacgtggaaaaggctgaatGgctcaataaggtgaggattg	14	8	15	4	1	1	3	1	2	0	1	1	5	1	5	0	5	0	2	0	5	5	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ESYT1	NM_015292	exon2	c.G422T	p.W141L	CTGAATGGCTCAA	.	83	4	54	0	.	84	T	56524397	T	T	56524397	3	4	28	1	0	0	0	0	1	0	0	0	5292	1357	47	3	428	3	ESYT1	12	56524397	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	578783	56524397	77327498	75	4485											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	57569279	57569279	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	taacggtggctgcagccacaActgctcagtggcacctggcg	8	7	13	13	2	1	0	1	0	0	0	1	0	1	0	2	4	5	4	2	4	2	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002332	exon23	c.A3584G	p.N1195S	GCCACAACTGCTC	.	29	5	15	0	.	.	G	57569279	A	G	57569279	3	3	28	1	0	0	0	0	1	0	0	0	8996	43	2	4	3674	4	LRP1	12	57569279	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	1044882	57569279	76282616	76	4486											
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	90028837	90028837	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtatctgaatgacctgacCacccctgatgacagtgaact	12	9	9	11	0	1	6	0	6	1	0	1	6	1	6	4	1	1	1	4	1	3	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001001323	exon3	c.G598A	p.G200S	CCTGACCACCCCT	.	37	10	31	0	.	.	T	90028837	C	T	90028837	3	4	28	1	0	0	0	0	1	0	0	0	1138	594	21	3	3294	3	ATP2B1	12	90028837	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	32459558	90028837	43823058	77	4487											
SLC17A8	246213	bcgsc.ca	37	chr12	100811849	100811849	+	Missense_Mutation	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cattgccccacgctatgccaGcattctcatggggatctcaa	9	10	8	14	1	2	0	2	0	2	0	4	1	2	1	3	2	3	2	3	2	2	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	SLC17A8	NM_139319	exon11	c.G1340A	p.S447N	ATGCCAGCATTCT	.	64	4	46	0	.	89	A	100811849	A	A	100811849	3	1	28	1	0	0	0	0	1	0	0	0	14478	971	34	3	1382	3	SLC17A8	12	100811849	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	10783012	100811849	33040046	78	4488											
CIT	11113	ucsc.edu	37	chr12	120172046	120172046	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tgggatttctcatcacccagGacgctcctccaggcctccca	7	9	8	17	1	2	0	2	0	1	0	6	2	5	2	5	3	0	1	5	3	0	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	CIT	NM_001206999	exon26	c.C3273T	p.V1091V	ACCCAGGACGCTC	.	23	5	24	1	.	535	A	120172046	G	A	120172046	2	1	28	1	0	0	0	0	0	0	0	1	3461	1161	41	3		3	CIT	12	120172046	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	19360197	120172046	13679849	79	4489											
C1QTNF9	338872	hgsc.bcm.edu;broad.mit.edu	37	chr13	24895265	24895265	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tccgaggagagactgggcctCaggggcagaaggggaataag	12	4	18	7	1	1	2	1	0	0	2	2	6	2	4	2	6	0	1	2	6	3	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_178540	exon4	c.C361T	p.Q121X	GGGCCTCAGGGGC	.	28	13	37	0	.	.	T	24895265	C	T	24895265	4	4	28	1	0	0	0	0	0	1	0	0	1983	827	29	3	371	3	C1QTNF9	13	24895265	Nonsense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		24895265	90274613	80	4490											
DCLK1	9201	hgsc.bcm.edu	37	chr13	36686146	36686146	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacagctttccgtggcttcaCgccacttctgatgatggtga	7	12	11	11	2	2	3	1	3	1	0	3	4	3	3	2	2	1	2	2	2	0	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DCLK1_ENST00000255448,NS,carcinoma,0,2	DCLK1_ENST00000255448	NM_004734	exon3	c.G583A	p.V195M	GCTTCACGCCACT	.	30	2	30	0	.	0	T	36686146	C	T	36686146	3	4	28	1	0	0	0	0	1	0	0	0	4314	536	19	1	1670	1	DCLK1	13	36686146	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	11790881	36686146	78483732	81	4491											
OLFM4	10562	hgsc.bcm.edu;bcgsc.ca	37	chr13	53624252	53624252	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtattgggtggcgccattGaatacagatgggagactgtt	9	12	14	6	1	0	3	0	1	0	2	0	4	0	3	1	3	1	2	1	3	3	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_006418	exon5	c.G879T	p.L293F	GCCATTGAATACA	.	82	4	87	0	.	.	T	53624252	G	T	53624252	3	4	28	1	0	0	0	0	1	0	0	0	10903	1281	45	3	897	3	OLFM4	13	53624252	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	16938106	53624252	61545626	82	4492											
PARP2	10038	hgsc.bcm.edu	37	chr14	20820419	20820419	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacagattccttgacaaaacGaaaaacaattgggaagatcg	18	8	8	7	2	0	3	0	1	0	2	2	5	1	4	1	1	3	0	1	1	7	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	PARP2_ENST00000250416,rectum,carcinoma,0,2	PARP2_ENST00000250416	NM_005484	exon7	c.G552T	p.T184T	CAAAACGAAAAAC	.	53	3	51	0	.	0	T	20820419	G	T	20820419	2	4	28	1	0	0	0	0	0	0	0	1	11508	1045	37	2		2	PARP2	14	20820419	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		20820419	86529121	83	4493											
SPRED1	161742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	38643598	38643607	+	Frame_Shift_Del	DEL	AGACCCTATT	AGACCCTATT	-																															ggaaaatgtcaggatgctccAgaccctattaaaagatgcat																								novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	AGACCCTATT	AGACCCTATT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_152594	exon7	c.1067_1076del	p.356_359del	TGCTCCAGACCCT	.	41	10	61	0	.	.	-	38643607	AGACCCTATT	-	38643598	7	5	28	1	0	1	0	1	0	0	0	0	15148	175	7	0	1094	0	SPRED1	15	38643598	Frame_Shift_Del	DEL	AGACCCTATT	TCGA-ZD-A8I3-01A-11D-A417-09		38643598	63887794	84	4494			2	7		2	2	16	N	AGACCCTATT_A	5.620593e-05
SPRED1	161742	bcgsc.ca	37	chr15	38643613	38643613	+	Missense_Mutation	SNP	A	C	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctccagaccctattaaaagAtgcatatatcaagttagttg	14	12	7	8	0	1	2	1	0	0	2	2	2	2	2	2	0	1	4	2	0	7	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	SPRED1	NM_152594	exon7	c.A1083C	p.R361S	TAAAAGATGCATA	.	41	13	55	0	.	51	C	38643613	C	C	38643613	3	2	28	1	0	0	0	0	1	0	0	0	15148	330	12	4	1109	4	SPRED1	15	38643613	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	15	38643613	63887779	85	4495			2	7		2	2	16	N	AGACCCTATT_A	5.620593e-05
SCAPER	49855	hgsc.bcm.edu	37	chr15	77046217	77046217	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctcgcttaaactcagcatGaagtaatttttcttccatca	11	16	4	10	1	4	1	2	1	2	0	6	1	5	1	1	0	2	3	1	0	4	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SCAPER_ENST00000538941,NS,carcinoma,0,2	SCAPER_ENST00000538941	NM_020843	exon14	c.C1798A	p.H600N	CAGCATGAAGTAA	.	38	2	32	0	.	0	T	77046217	G	T	77046217	3	4	28	1	0	0	0	0	1	0	0	0	13931	1290	45	3	2476	3	SCAPER	15	77046217	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	38402604	77046217	25485175	86	4496											
ACAN	176	hgsc.bcm.edu	37	chr15	89400503	89400503	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agacctctgcttctgaagtaGggactgacctcagtgggctt	8	11	12	10	0	3	3	1	2	2	1	3	4	3	4	2	2	1	3	2	2	2	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	AGC1,right_upper_lobe,carcinoma,0,2	AGC1	NM_001135	exon12	c.G4687T	p.G1563W	GAAGTAGGGACTG	.	40	2	47	0	.	0	T	89400503	G	T	89400503	3	4	28	1	0	0	0	0	1	0	0	0	117	1000	35	3	4729	3	ACAN	15	89400503	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	12354286	89400503	13130889	87	4497											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	16180684	16180684	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtctctccccagggcGtgaacctgtctgggggccag	4	10	15	12	1	2	1	0	1	2	0	4	1	3	1	4	3	1	0	4	3	1	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004996	exon18	c.G2296A	p.V766M	CAGGGCGTGAACC	.	34	8	29	0	.	.	A	16180684	G	A	16180684	3	1	28	1	0	0	0	0	1	0	0	0	49	1145	40	1	2366	1	ABCC1	16	16180684	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		16180684	74174069	88	4498											
ITGAL	3683	hgsc.bcm.edu	37	chr16	30525161	30525161	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atccaccaagtcaagcacatGtaccaggtatgaatcccaat	15	8	6	12	0	1	1	1	1	0	0	3	1	3	1	4	1	2	3	4	1	6	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002209	exon25	c.G2856T	p.M952I	GCACATGTACCAG	.	79	4	60	0	.	.	T	30525161	G	T	30525161	3	4	28	1	0	0	0	0	1	0	0	0	7930	1377	48	3	2954	3	ITGAL	16	30525161	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	14344477	30525161	59829592	89	4499											
PHKB	5257	hgsc.bcm.edu;bcgsc.ca	37	chr16	47675545	47675545	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaacacatatggtattcaaaCtcaaactcctcaacaagtag	17	9	5	10	0	3	0	3	0	0	0	4	1	4	0	1	1	4	2	1	1	8	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_000293	exon16	c.C1550T	p.T517I	TTCAAACTCAAAC	.	74	4	60	0	.	.	T	47675545	C	T	47675545	3	4	28	1	0	0	0	0	1	0	0	0	11893	565	20	3	1671	3	PHKB	16	47675545	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	17150384	47675545	42679208	90	4500											
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53191285	53191285	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acattcggacaagataattcAagtcacattttagatcatga	16	12	6	7	1	3	3	3	1	0	2	4	4	3	4	0	1	0	0	0	1	4	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_025134	exon2	c.A1284G	p.S428S	TAATTCAAGTCAC	.	33	8	19	0	.	.	G	53191285	A	G	53191285	2	3	28	1	0	0	0	0	0	0	0	1	3354	117	5	4		4	CHD9	16	53191285	Silent	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	5515740	53191285	37163468	91	4501											
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	66424338	66424338	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcgtgcctgaagacaccCgtgtgggcacctctgtgggc	5	10	14	12	2	1	2	0	1	1	1	2	2	1	2	3	2	1	1	3	2	1	1	rs375751151	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001795	exon6	c.C814T	p.R272C	GACACCCGTGTGG	.	49	19	33	0	.	.	T	66424338	C	T	66424338	3	4	28	1	0	0	0	0	1	0	0	0	3135	652	23	1	832	1	CDH5	16	66424338	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	13233053	66424338	23930415	92	4502											
WSCD1	23302	hgsc.bcm.edu	37	chr17	6023684	6023684	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctcgcacgtcctggaCtggctcaagtacgggaagcg	7	8	14	12	4	1	0	1	0	0	0	4	2	3	2	2	4	2	3	2	4	3	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	WSCD1,NS,carcinoma,0,1	WSCD1	NM_015253	exon9	c.C1431A	p.D477E	CCTGGACTGGCTC	.	55	3	34	0	.	0	A	6023684	C	A	6023684	3	1	28	1	0	0	0	0	1	0	0	0	17466	564	20	3	1461	3	WSCD1	17	6023684	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		6023684	75171526	93	4503											
SENP3	26168	hgsc.bcm.edu	37	chr17	7466484	7466484	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actcaagtcccaggcgggagCgtcttcgttggcccccacct	6	8	11	16	3	2	0	1	0	1	0	4	1	3	1	4	3	1	1	4	3	1	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SENP3_ENST00000429205,colon,carcinoma,0,1	SENP3_ENST00000429205	NM_015670	exon2	c.C91T	p.R31C	CGGGAGCGTCTTC	.	64	3	75	0	.	0	T	7466484	C	T	7466484	3	4	28	1	0	0	0	0	1	0	0	0	14102	768	27	1	93	1	SENP3	17	7466484	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	1442800	7466484	73728726	94	4504											
DNAH2	146754	hgsc.bcm.edu	37	chr17	7705318	7705318	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cccaccaaatacctggaactCctgtctggatataagaagta	14	9	7	11	0	1	1	0	0	1	1	2	3	2	3	4	2	2	1	4	2	7	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DNAH2,NS,carcinoma,0,1	DNAH2	NM_020877	exon57	c.C8955A	p.L2985L	GGAACTCCTGTCT	.	35	2	26	0	.	0	A	7705318	C	A	7705318	2	1	28	1	0	0	0	0	0	0	0	1	4630	842	30	3		3	DNAH2	17	7705318	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	238834	7705318	73489892	95	4505											
C1QL1	10882	hgsc.bcm.edu	37	chr17	43037583	43037583	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagtagatgatgaagccagaGaacgtgctgtatttgttgct	11	12	13	5	1	0	4	0	2	0	2	0	6	0	4	1	0	4	5	1	0	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	C1QL1,NS,carcinoma,0,2	C1QL1	NM_006688	exon2	c.C750A	p.F250L	GCCAGAGAACGTG	.	41	3	50	0	.	0	T	43037583	G	T	43037583	3	4	28	1	0	0	0	0	1	0	0	0	1971	933	33	3	30	3	C1QL1	17	43037583	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	35332265	43037583	38157627	96	4506											
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	6997830	6997830	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gttcagagaaagaacggcatCaccaatctcatccaagtcat	15	8	7	11	1	4	2	4	0	1	2	6	3	5	2	2	1	1	2	2	1	4	1	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_005559	exon33	c.G4717C	p.D1573H	CGGCATCACCAAT	.	51	22	51	0	.	.	G	6997830	C	G	6997830	3	3	28	1	0	0	0	0	1	0	0	0	8644	826	29	5	4634	5	LAMA1	18	6997830	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		6997830	71079418	97	4507											
MYO5B	4645	hgsc.bcm.edu	37	chr18	47405423	47405423	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcctcctccagttctttcttCatgagattttccttcacaga	7	17	4	13	0	4	2	2	1	2	2	8	3	8	2	4	0	0	1	4	0	0	6	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001080467	exon24	c.G3168C	p.M1056I	TTTCTTCATGAGA	.	58	5	38	0	.	.	G	47405423	C	G	47405423	3	3	28	1	0	0	0	0	1	0	0	0	10127	826	29	5	2446	5	MYO5B	18	47405423	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	40407593	47405423	30671825	98	4508											
KIAA1468	57614	hgsc.bcm.edu	37	chr18	59919949	59919949	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcgtcatgttggaccaacaCgtgtagaagctgaactttta	11	11	10	9	3	1	2	1	1	0	1	1	3	1	3	1	1	3	3	1	1	5	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KIAA1468,colon,carcinoma,0,1	KIAA1468	NM_020854	exon12	c.C1786T	p.R596C	CCAACACGTGTAG	.	41	2	36	0	.	0	T	59919949	C	T	59919949	3	4	28	1	0	0	0	0	1	0	0	0	8278	536	19	1	1832	1	KIAA1468	18	59919949	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	12514526	59919949	18157299	99	4509											
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	63489459	63489459	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccctaactgatgtcaaCgataatccacctcgctttcc	10	11	6	14	2	1	2	1	2	0	0	4	3	3	2	4	0	2	1	4	0	3	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004361	exon5	c.C768T	p.N256N	TGTCAACGATAAT	.	38	10	26	0	.	.	T	63489459	C	T	63489459	2	4	28	1	0	0	0	0	0	0	0	1	3137	535	19	1		1	CDH7	18	63489459	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	3569510	63489459	14587789	100	4510											
ZNF98	148198	hgsc.bcm.edu	37	chr19	22574573	22574573	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cattcttcacatttgtagggCttctctccagtatgaattac	9	16	6	10	0	3	1	1	1	2	0	5	1	4	1	1	1	1	3	1	1	4	7	rs74174065	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF98_ENST00000357774,NS,carcinoma,0,2	ZNF98_ENST00000357774	NM_001098626	exon4	c.G1464A	p.K488K	GTAGGGCTTCTCT	.	46	4	38	1	.	0	T	22574573	C	T	22574573	2	4	28	1	0	0	0	0	0	0	0	1	18245	796	28	3		3	ZNF98	19	22574573	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		22574573	36554410	101	4511											
SHKBP1	92799	hgsc.bcm.edu	37	chr19	41088331	41088331	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcattgctacaagccacacaGggcgcatcggggtgtggaat	10	8	13	10	2	1	0	1	0	0	0	2	1	1	1	1	4	3	2	1	4	3	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SHKBP1,colon,carcinoma,0,1	SHKBP1	NM_138392	exon10	c.G919A	p.G307R	CACACAGGGCGCA	.	49	2	61	0	.	0	A	41088331	G	A	41088331	3	1	28	1	0	0	0	0	1	0	0	0	14339	1000	35	3	957	3	SHKBP1	19	41088331	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	18513758	41088331	18040652	102	4512											
ZNF615	284370	hgsc.bcm.edu	37	chr19	52497156	52497156	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcctgtatgagtttgCtgatgtgtgataagactgtt	7	18	10	6	0	1	4	0	3	1	1	3	4	2	4	1	0	1	4	1	0	2	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF615,NS,carcinoma,0,2	ZNF615	NM_001199324	exon7	c.G1206A	p.Q402Q	AGTTTGCTGATGT	.	47	2	37	0	.	0	T	52497156	C	T	52497156	2	4	28	1	0	0	0	0	0	0	0	1	18097	796	28	3		3	ZNF615	19	52497156	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	11408825	52497156	6631827	103	4513											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2968722	2968722	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagccattccaattctttccGcttatccaacggccgcactg	8	11	7	15	3	1	0	0	0	1	0	4	1	4	0	5	1	2	2	5	1	3	4	rs375070304		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002836	exon12	c.G572A	p.R191H	CTTTCCGCTTATC	.	47	17	43	0	.	.	A	2968722	G	A	2968722	3	1	28	1	0	0	0	0	1	0	0	0	12847	1087	38	1	590	1	PTPRA	20	2968722	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		2968722	60056798	104	4514											
SSTR4	6754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23016852	23016852	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgcgcgccgtggccctgcgCgctggctggcagcagcgcag	4	5	17	15	6	0	0	0	0	0	0	0	0	0	0	2	3	4	5	2	3	0	0	rs369953610		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001052	exon1	c.C732T	p.R244R	CCTGCGCGCTGGC	.	19	8	33	0	.	.	T	23016852	C	T	23016852	2	4	28	1	0	0	0	0	0	0	0	1	15256	755	27	1		1	SSTR4	20	23016852	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	20048130	23016852	40008668	105	4515											
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	39832988	39832988	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggcttcagctttgcctttcAttatcttcatgattggagtt	6	19	8	8	0	4	1	3	1	1	0	4	2	4	2	1	2	2	3	1	2	1	7	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_015035	exon3	c.T569C	p.M190T	CCTTTCATTATCT	.	24	10	19	0	.	.	G	39832988	A	G	39832988	3	3	28	1	0	0	0	0	1	0	0	0	17735	217	8	4	2309	4	ZHX3	20	39832988	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09	16816136	39832988	23192532	106	4516											
KRTAP10-7	386675	hgsc.bcm.edu	37	chr21	46020608	46020608	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttcctgtgactcttgctcCgactcctggcaggtggacga	5	11	13	12	2	1	1	0	1	1	0	4	4	4	2	3	4	1	3	3	4	0	2	rs374137541	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KRTAP10-7_ENST00000380102,NS,carcinoma,0,2	KRTAP10-7_ENST00000380102	NM_198689	exon1	c.C87T	p.S29S	TTGCTCCGACTCC	.	108	6	98	2	.	0	T	46020608	C	T	46020608	2	4	28	1	0	0	0	0	0	0	0	1	8557	639	23	1		1	KRTAP10-7	21	46020608	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09		46020608	2109287	107	4517											
CABIN1	23523	hgsc.bcm.edu	37	chr22	24573580	24573580	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgccagctccaaggcccccaGcagtgggagtgcccagccac	8	4	12	17	0	0	0	0	0	0	0	1	1	1	1	6	2	5	2	6	2	1	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001199281	exon36	c.G6314T	p.S2105I	CCCCCAGCAGTGG	.	49	4	52	0	.	.	T	24573580	G	T	24573580	3	4	28	1	0	0	0	0	1	0	0	0	2546	971	34	3	6452	3	CABIN1	22	24573580	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09		24573580	26730986	108	4518											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	7	12	13	9	0	2	1	1	1	2	0	4	2	3	2	2	4	1	3	2	4	2	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT	.	309	4	313	1	.	24	G	7868821	A	G	7868821	3	3	28	1	0	0	0	0	1	0	0	0	12215	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-ZD-A8I3-01A-11D-A417-09		7868821	147401739	109	4519											
MOSPD2	158747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	14936834	14936834	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tactgttgaaagcagtaaacCaaacactcttacgttaaaag	17	10	6	8	1	1	1	0	1	1	0	1	1	1	1	1	0	5	4	1	0	8	5	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_152581	exon14	c.C1349A	p.P450Q	GTAAACCAAACAC	.	183	36	222	0	.	.	A	14936834	C	A	14936834	3	1	28	1	0	0	0	0	1	0	0	0	9765	594	21	3	1403	3	MOSPD2	23	14936834	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	7068013	14936834	140333726	110	4520											
PRICKLE3	4007	broad.mit.edu	37	chrX	49034449	49034449	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agcgctgccctcctagtgaaGcttcacactcaaagcagcag	11	7	9	14	1	2	1	2	1	0	0	3	1	3	1	2	0	5	4	2	0	3	2	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PRICKLE3	NM_006150	exon7	c.C848A	p.A283D	AGTGAAGCTTCAC	.	34	3	36	0	.	59	T	49034449	G	T	49034449	3	4	28	1	0	0	0	0	1	0	0	0	12540	971	34	3	1011	3	PRICKLE3	23	49034449	Missense_Mutation	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	34097615	49034449	106236111	111	4521											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	11	6	19	5	3	1	2	1	0	0	2	2	6	2	4	1	5	1	2	1	5	4	2	rs2801626		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	106	8	89	1	.	28	A	51076024	G	A	51076024	2	1	28	1	0	0	0	0	0	0	0	1	10774	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	2041575	51076024	104194536	112	4522											
CDX4	1046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	72674415	72674415	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atacagcaggttatagtctcCgaatgaaagaaagcaaagag	18	7	10	6	1	1	3	0	1	1	2	2	4	1	3	1	1	3	3	1	1	7	3	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_005193	exon3	c.C849T	p.S283S	AGTCTCCGAATGA	.	316	24	69	0	.	.	T	72674415	C	T	72674415	2	4	28	1	0	0	0	0	0	0	0	1	3206	639	23	1		1	CDX4	23	72674415	Silent	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	21598391	72674415	82596145	113	4523											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	134986716	134986716	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	ataatgtcttgtcaactgctCcaccatggcctggtaatatg	10	13	8	10	0	2	0	1	0	1	0	3	0	3	0	3	2	2	2	3	2	4	4	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018666	exon4	c.C301T	p.P101S	ACTGCTCCACCAT	.	68	14	50	0	.	.	T	134986716	C	T	134986716	3	4	28	1	0	0	0	0	1	0	0	0	13861	855	30	3	311	3	SAGE1	23	134986716	Missense_Mutation	SNP	C	TCGA-ZD-A8I3-01A-11D-A417-09	62312301	134986716	20283844	114	4524											
HMGB3	3149	broad.mit.edu	37	chrX	150156360	150156360	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagaagaGgaggaggaggaggaggagga	17	0	24	0	0	0	3	0	0	0	3	0	14	0	13	0	10	0	0	0	10	3	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	HMGB3	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG	.	32	3	27	0	.	27	A	150156360	G	A	150156360	2	1	28	1	0	0	0	0	0	0	0	1	7268	991	35	3		3	HMGB3	23	150156360	Silent	SNP	G	TCGA-ZD-A8I3-01A-11D-A417-09	15169644	150156360	5114200	115	4525											
GDI1	2664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153667150	153667150	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctggaggggccccctgagTcgatgggccgaggccgagac	6	5	18	12	3	0	2	0	1	0	1	1	6	0	3	4	5	1	1	4	5	0	0	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001493	exon3	c.T193C	p.S65P	CCTGAGTCGATGG	.	41	7	47	0	.	.	C	153667150	T	C	153667150	3	2	28	1	0	0	0	0	1	0	0	0	6362	1667	58	4	203	4	GDI1	23	153667150	Missense_Mutation	SNP	T	TCGA-ZD-A8I3-01A-11D-A417-09	3510790	153667150	1603410	116	4526											
NOL9	79707	hgsc.bcm.edu	37	chr1	6610487	6610487	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgagatttgagcaaattccgGgcttcccttttcagttcctt	7	16	8	10	1	1	2	1	2	0	1	4	3	4	2	3	1	1	3	3	1	1	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	NOL9,NS,carcinoma,0,1	NOL9	NM_024654	exon2	c.C585A	p.A195A	ATTCCGGGCTTCC	.	35	2	101	0	.	0	T	6610487	G	T	6610487	2	4	29	1	0	0	0	0	0	0	0	1	10575	1219	43	3		3	NOL9	1	6610487	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		6610487	242640134	1	4527											
UBE4B	10277	bcgsc.ca	37	chr1	10192481	10192481	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	taaatggcgaaacccgtgagGctgctctcagttacatggcg	10	9	12	10	3	1	1	1	1	1	0	2	2	1	1	1	3	3	3	1	3	4	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	UBE4B	NM_001105562	exon15	c.G1966T	p.A656S	CGTGAGGCTGCTC	.	53	4	132	0	.	233	T	10192481	T	T	10192481	3	4	29	1	0	0	0	0	1	0	0	0	16944	1203	42	3	2024	3	UBE4B	1	10192481	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	3581994	10192481	239058140	2	4528											
KIF1B	23095	broad.mit.edu	37	chr1	10331564	10331564	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tattgttctttatcaggtcaGtaaaatcagcttggtggatc	10	16	9	6	0	4	0	3	0	1	0	5	1	4	1	0	3	1	3	0	3	4	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	KIF1B	NM_183416	exon8	c.G725T	p.S242I	AGGTCAGTAAAAT	.	65	3	155	0	.	242	T	10331564	G	T	10331564	3	4	29	1	0	0	0	0	1	0	0	0	8326	1029	36	3	751	3	KIF1B	1	10331564	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	139083	10331564	238919057	3	4529											
PGD	5226	bcgsc.ca	37	chr1	10471520	10471520	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgaagatggtgcacaacGggatagagtatggggacatg	12	8	16	5	2	0	3	0	1	0	2	1	5	0	5	0	4	2	2	0	4	4	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PGD	NM_002631	exon7	c.G565T	p.G189W	CACAACGGGATAG	.	26	3	67	0	.	39	T	10471520	T	T	10471520	3	4	29	1	0	0	0	0	1	0	0	0	11835	1116	39	2	591	2	PGD	1	10471520	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	139956	10471520	238779101	4	4530											
ST3GAL3	6487	broad.mit.edu	37	chr1	44303969	44303969	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatgcttcagccttgatgacGgccatcttcccccggtaagt	7	12	9	13	2	2	2	1	2	1	0	3	2	3	2	4	2	2	2	4	2	2	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ST3GAL3,NS,carcinoma,+1,1	ST3GAL3	NM_174963	exon6	c.G495T	p.T165T	GATGACGGCCATC	.	60	3	55	0	.	56	T	44303969	G	T	44303969	2	4	29	1	0	0	0	0	0	0	0	1	15272	1103	39	2		2	ST3GAL3	1	44303969	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	33832449	44303969	204946652	5	4531											
DPH2	1802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44437356	44437356	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	agggaagactcaggatgaggGtgcccgggctggacggctaa	10	5	18	8	2	1	2	1	1	0	1	1	5	1	5	1	6	1	2	1	6	2	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001384	exon4	c.G782T	p.G261V	ATGAGGGTGCCCG	.	20	6	33	0	.	.	T	44437356	G	T	44437356	3	4	29	1	0	0	0	0	1	0	0	0	4747	1261	44	3	796	3	DPH2	1	44437356	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	133387	44437356	204813265	6	4532											
CD1D	912	hgsc.bcm.edu	37	chr1	158152690	158152690	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	aagcccaaggcctggctgtcCcgtggccccagtcctggccc	5	6	12	18	1	0	0	0	0	0	0	2	0	2	0	7	4	1	1	7	4	2	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001766	exon5	c.C630T	p.S210S	GCTGTCCCGTGGC	.	89	4	99	0	.	.	T	158152690	C	T	158152690	2	4	29	1	0	0	0	0	0	0	0	1	2999	610	22	3		3	CD1D	1	158152690	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	113715334	158152690	91097931	7	4533											
DDX59	83479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200635799	200635799	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctgggtctggtttaattaTcttagccacacaacttttgc	8	17	7	9	0	3	0	0	0	3	0	3	0	3	0	1	2	3	1	1	2	4	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001031725	exon2	c.A70G	p.I24V	TAATTATCTTAGC	.	51	25	26	0	.	.	C	200635799	T	C	200635799	3	2	29	1	0	0	0	0	1	0	0	0	4399	1435	50	4	1817	4	DDX59	1	200635799	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	42483109	200635799	48614822	8	4534											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	240370270	240370270	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atggagtgacagcctcaggcGatgtctgtctcgaagctctc	8	10	12	11	2	4	1	1	1	3	0	6	4	4	2	1	2	2	1	1	2	1	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_020066	exon5	c.G2158T	p.D720Y	TCAGGCGATGTCT	.	65	16	54	0	.	.	T	240370270	G	T	240370270	3	4	29	1	0	0	0	0	1	0	0	0	5983	1058	37	2	2176	2	FMN2	1	240370270	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	39734471	240370270	8880351	9	4535											
PXDN	7837	hgsc.bcm.edu	37	chr2	1658220	1658220	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttatagctctgtcaacagtcGcaatcgcttccacgatggag	10	11	9	11	3	2	0	1	0	1	0	5	2	3	1	1	1	2	3	1	1	4	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PXDN,NS,NS,0,1	PXDN	NM_012293	exon15	c.C1898T	p.A633V	ACAGTCGCAATCG	.	37	2	72	0	.	0	A	1658220	G	A	1658220	3	1	29	1	0	0	0	0	1	0	0	0	12899	1087	38	1	2577	1	PXDN	2	1658220	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		1658220	241541153	10	4536											
SUPT7L	9913	hgsc.bcm.edu	37	chr2	27878277	27878277	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggttagatgggaagcGttcgctctgagccccaagca	9	8	12	12	2	1	2	0	1	1	1	3	3	2	3	3	2	3	4	3	2	3	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SUPT7L,NS,carcinoma,0,1	SUPT7L	NM_014860	exon5	c.C937T	p.R313C	GGAAGCGTTCGCT	.	47	2	66	0	.	0	A	27878277	G	A	27878277	3	1	29	1	0	0	0	0	1	0	0	0	15457	1145	40	1	315	1	SUPT7L	2	27878277	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	26220057	27878277	215321096	11	4537											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32613960	32613960	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ggacagattgtcttacctctTacctagtgcacgtccagaac	10	11	8	12	1	2	2	0	0	2	2	3	3	3	3	3	1	4	1	3	1	4	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_016252	exon4	c.T788C	p.L263S	ACCTCTTACCTAG	.	81	27	164	0	.	.	C	32613960	T	C	32613960	3	2	29	1	0	0	0	0	1	0	0	0	1437	1764	61	4	802	4	BIRC6	2	32613960	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	4735683	32613960	210585413	12	4538											
IL1F10	84639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113831950	113831950	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctatacacaagagatggccAgctgctggtgggagatcctg	10	9	13	9	0	1	2	0	0	1	2	2	4	2	2	2	3	3	2	2	3	3	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173161	exon3	c.A77G	p.Q26R	ATGGCCAGCTGCT	.	36	10	40	0	.	.	G	113831950	A	G	113831950	3	3	29	1	0	0	0	0	1	0	0	0	7696	188	7	4	83	4	IL1F10	2	113831950	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	81217990	113831950	129367423	13	4539											
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	127821523	127821523	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctcacctgttccacagggaCggcagctcctcctgcagatc	7	8	9	17	1	1	1	1	0	0	1	5	2	4	2	5	2	2	4	5	2	0	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	BIN1_ENST00000259238,NS,carcinoma,0,2	BIN1_ENST00000259238	NM_139345	exon8	c.G684A	p.P228P	CAGGGACGGCAGC	.	73	18	99	0	.	0	T	127821523	C	T	127821523	2	4	29	1	0	0	0	0	0	0	0	1	1431	523	19	1		1	BIN1	2	127821523	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	13989573	127821523	115377850	14	4540											
MBD5	55777	hgsc.bcm.edu;bcgsc.ca	37	chr2	149247273	149247273	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagctctgagtgccatgagtGccttcactgcctcaattggt	7	12	10	12	0	3	2	2	2	1	0	3	2	3	2	3	1	4	1	3	1	1	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018328	exon12	c.G3373T	p.A1125S	ATGAGTGCCTTCA	.	61	4	62	0	.	.	T	149247273	G	T	149247273	3	4	29	1	0	0	0	0	1	0	0	0	9397	1319	46	3	3399	3	MBD5	2	149247273	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	21425750	149247273	93952100	15	4541											
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	158157491	158157491	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgacttaagggctcccAttgtgagagctagtggtgtg	7	13	13	8	0	0	2	0	2	0	1	2	3	2	2	2	2	1	2	2	2	2	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014568	exon7	c.A2419G	p.I807V	GCTCCCATTGTGA	.	64	35	78	0	.	.	G	158157491	A	G	158157491	3	3	29	1	0	0	0	0	1	0	0	0	6256	217	8	4	2445	4	GALNT5	2	158157491	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	8910218	158157491	85041882	16	4542											
GAD1	2571	hgsc.bcm.edu	37	chr2	171702544	171702544	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaataattccagctgattttGaggcaaaaattcttgaagcc	15	12	7	7	0	1	3	0	3	1	0	2	3	2	3	2	1	2	2	2	1	5	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	GAD1,bladder,carcinoma,0,1	GAD1	NM_000817	exon10	c.G973T	p.E325X	GATTTTGAGGCAA	.	72	4	110	0	.	0	T	171702544	G	T	171702544	4	4	29	1	0	0	0	0	0	1	0	0	6214	1291	45	3	1048	3	GAD1	2	171702544	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	13545053	171702544	71496829	17	4543											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	196759763	196759763	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcactagtttttcctccaaaTggttctccaacaatcataaa	13	13	4	11	0	2	0	1	0	1	0	5	0	4	0	3	1	1	3	3	1	6	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018897	exon30	c.A4833G	p.P1611P	TCCAAATGGTTCT	.	124	10	157	0	.	.	C	196759763	T	C	196759763	2	2	29	1	0	0	0	0	0	0	0	1	4633	1451	51	4		4	DNAH7	2	196759763	Silent	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	25057219	196759763	46439610	18	4544											
FZD5	7855	hgsc.bcm.edu	37	chr2	208632294	208632294	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggttctggttgcccacgtaGcagatgccggccactgggtc	6	9	14	12	2	1	1	0	0	1	1	2	1	1	1	3	4	3	4	3	4	1	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_003468	exon2	c.C1170A	p.C390X	CACGTAGCAGATG	.	45	4	47	0	.	.	T	208632294	G	T	208632294	4	4	29	1	0	0	0	0	0	1	0	0	6168	963	34	3	591	3	FZD5	2	208632294	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	11872531	208632294	34567079	19	4545											
TRPM8	79054	hgsc.bcm.edu	37	chr2	234869591	234869591	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtaccggaatctgcagatcGccaagaattcctataatgat	13	11	8	9	2	1	3	0	1	1	2	3	4	2	4	3	1	2	2	3	1	6	4	rs200884995	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	TRPM8,colon,carcinoma,0,1	TRPM8	NM_024080	exon12	c.G1534T	p.A512S	CAGATCGCCAAGA	.	56	3	90	0	.	0	T	234869591	G	T	234869591	3	4	29	1	0	0	0	0	1	0	0	0	16653	1087	38	2	1576	2	TRPM8	2	234869591	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	26237297	234869591	8329782	20	4546											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	1427411	1427411	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aataccatctactttgcttcCgtaagagcttacaacactgc	12	12	5	12	1	1	1	0	0	1	1	2	1	2	1	2	0	7	3	2	0	6	6	rs369348874	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014461	exon20	c.C2634T	p.S878S	TGCTTCCGTAAGA	.	56	6	132	0	.	.	T	1427411	C	T	1427411	2	4	29	1	0	0	0	0	0	0	0	1	3668	639	23	1		1	CNTN6	3	1427411	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		1427411	196595019	21	4547											
ITGA9	3680	hgsc.bcm.edu;bcgsc.ca	37	chr3	37565093	37565093	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcattgatatggatggaaatGgctatcctggtaagctgttt	10	14	12	5	0	0	1	0	1	0	0	1	3	1	3	1	4	1	5	1	4	4	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002207	exon12	c.G1318T	p.G440C	GGAAATGGCTATC	.	68	4	131	0	.	.	T	37565093	G	T	37565093	3	4	29	1	0	0	0	0	1	0	0	0	7927	1348	47	3	1364	3	ITGA9	3	37565093	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	36137682	37565093	160457337	22	4548											
SCN5A	6331	hgsc.bcm.edu	37	chr3	38592470	38592470	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctctgggtcaaatttctccCagatctcatagaacatatcg	11	12	6	12	1	4	2	2	0	3	2	7	2	4	2	2	1	1	0	2	1	4	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SCN5A_ENST00000413689,right_upper_lobe,carcinoma,0,6	SCN5A_ENST00000413689	NM_198056	exon28	c.G5393A	p.W1798X	TTCTCCCAGATCT	.	49	2	79	0	.	0	T	38592470	C	T	38592470	4	4	29	1	0	0	0	0	0	1	0	0	13976	595	21	3	661	3	SCN5A	3	38592470	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	1027377	38592470	159429960	23	4549											
QARS	5859	bcgsc.ca	37	chr3	49137444	49137444	+	Silent	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tacttgactcgataggctacAgggtccatcttgccatcctc	8	12	8	13	1	1	1	0	1	1	0	5	2	3	1	3	2	3	1	3	2	3	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	QARS	NM_005051	exon14	c.T1245C	p.P415P	GGCTACAGGGTCC	.	17	3	48	0	.	55	G	49137444	G	G	49137444	2	3	29	1	0	0	0	0	0	0	0	1	12923	175	7	4		4	QARS	3	49137444	Silent	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	10544974	49137444	148884986	24	4550											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52678790	52678790	+	Nonsense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttcatataaaatattttttTaattgaatttgcatcctgtc	12	21	3	5	0	1	1	1	1	0	0	3	1	2	1	1	0	1	1	1	0	6	10	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PBRM1_ENST00000356770,colon,carcinoma,0,3	PBRM1_ENST00000356770	NM_018313	exon9	c.A829T	p.K277X	TTTTTTTAATTGA	.	86	49	252	0	.	0	A	52678790	T	A	52678790	4	1	29	1	0	0	0	0	0	1	0	0	11538	1763	61	5	4163	5	PBRM1	3	52678790	Nonsense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	3541346	52678790	145343640	25	4551											
TRIM42	287015	bcgsc.ca	37	chr3	140407354	140407354	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccaggcccaattgttatctaCcagactctggtgtacccaag	10	10	8	13	0	2	1	0	0	2	1	2	1	2	1	4	2	2	2	4	2	5	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRIM42	NM_152616	exon3	c.C1830T	p.Y610Y	TATCTACCAGACT	.	32	3	49	0	.	143	T	140407354	T	T	140407354	2	4	29	1	0	0	0	0	0	0	0	1	16578	518	18	3		3	TRIM42	3	140407354	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	87728564	140407354	57615076	26	4552											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	13	12	7	9	0	4	4	1	2	3	2	6	5	5	4	1	1	1	1	1	1	3	3	rs104886003	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PIK3CA_ENST00000263967,NS,carcinoma,0,1131	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	127	40	221	0	.	0	A	178936091	G	A	178936091	3	1	29	1	0	0	0	0	1	0	0	0	11961	1291	45	3	1667	3	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	38528737	178936091	19086339	27	4553											
MUC4	4585	hgsc.bcm.edu	37	chr3	195509579	195509579	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagagaggtggCgtgacctgtggatgctgagg	9	7	20	5	1	0	4	0	3	0	1	0	7	0	6	1	6	1	1	1	6	1	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.G8872A	p.A2958T	AGGTGGCGTGACC	.	51	4	93	2	.	0	T	195509579	C	T	195509579	3	4	29	1	0	0	0	0	1	0	0	0	10026	768	27	1		1	MUC4	3	195509579	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	16573488	195509579	2512851	28	4554											
OTOP1	133060	hgsc.bcm.edu	37	chr4	4199570	4199570	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cccaatatgaatcaggtataCcaccaccacagcaatggtgg	14	7	8	12	0	1	1	1	1	0	0	1	1	1	1	4	3	2	2	4	3	6	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OTOP1,trunk,malignant_melanoma,0,1	OTOP1	NM_177998	exon5	c.G991A	p.V331I	GGTATACCACCAC	.	33	2	54	2	.	0	T	4199570	C	T	4199570	3	4	29	1	0	0	0	0	1	0	0	0	11352	507	18	3	855	3	OTOP1	4	4199570	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		4199570	186954706	29	4555											
KIT	3815	hgsc.bcm.edu	37	chr4	55597561	55597561	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atgttgtcccaaccaaggccGacaaaaggagatctgtgaga	14	7	11	9	1	1	2	0	1	1	2	2	5	2	2	3	2	1	1	3	2	4	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KIT,NS,carcinoma,0,2	KIT	NM_000222	exon15	c.G2209A	p.D737N	AAGGCCGACAAAA	.	42	2	105	1	.	0	A	55597561	G	A	55597561	3	1	29	1	0	0	0	0	1	0	0	0	8372	1058	37	1	2267	1	KIT	4	55597561	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	51397991	55597561	135556715	30	4556											
ADH6	130	hgsc.bcm.edu;ucsc.edu	37	chr4	100125185	100125185	+	RNA	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgatccttggtgacaCtgggttacgtaagaacaatt	11	11	12	7	1	0	3	0	2	0	1	1	4	1	3	1	3	2	3	1	3	4	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GTGACACTGGGTT	.	26	12	24	0	.	.	T	100125185	C	T	100125185	1	4	29	0	1	0	0	0	0	0	0	0	311	580	20	3		3	ADH6	4	100125185	RNA	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	44527624	100125185	91029091	31	4557											
CDH9	1007	hgsc.bcm.edu	37	chr5	26885928	26885928	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aataagtaggtgctcattttGttgcgactgtagccatcttt	9	16	9	7	1	2	0	1	0	1	0	2	1	2	0	1	1	3	4	1	1	4	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CDH9,NS,carcinoma,-2,1	CDH9	NM_016279	exon11	c.C1677A	p.N559K	CATTTTGTTGCGA	.	66	3	111	0	.	-2	T	26885928	G	T	26885928	3	4	29	1	0	0	0	0	1	0	0	0	3139	1368	48	3	700	3	CDH9	5	26885928	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		26885928	154029332	32	4558											
PDZD2	23037	hgsc.bcm.edu	37	chr5	32077650	32077650	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgctctgtcccatctggatgCcagccacctcacagagaacc	9	8	8	16	0	3	1	1	0	2	1	4	3	4	2	5	1	4	1	5	1	1	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PDZD2,NS,carcinoma,0,1	PDZD2	NM_178140	exon18	c.C3620T	p.A1207V	TGGATGCCAGCCA	.	32	2	56	0	.	0	T	32077650	C	T	32077650	3	4	29	1	0	0	0	0	1	0	0	0	11748	739	26	3	3690	3	PDZD2	5	32077650	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	5191722	32077650	148837610	33	4559											
SPEF2	79925	bcgsc.ca	37	chr5	35789374	35789374	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttggatgtcatgaatgtcCttagcattctgtcctgtgtc	6	17	10	8	0	2	1	1	1	1	0	5	2	4	2	2	1	1	2	2	1	2	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	SPEF2	.	.	.	.	AATGTCCTTAGCA	.	48	4	91	0	.	324	A	35789374	A	A	35789374	3	1	29	1	0	0	0	0	1	0	0	0	15091	696	24	3		3	SPEF2	5	35789374	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	3711724	35789374	145125886	34	4560											
SSBP2	23635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	80724478	80724478	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggagtgcccggttgattacTcaggctcatattattgggag	8	13	13	7	1	2	1	2	1	0	0	2	3	2	3	1	4	2	2	1	4	3	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001256732	exon16	c.A1006G	p.S336G	GATTACTCAGGCT	.	79	6	160	0	.	.	C	80724478	T	C	80724478	3	2	29	1	0	0	0	0	1	0	0	0	15236	1551	54	4	111	4	SSBP2	5	80724478	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	44935104	80724478	100190782	35	4561											
PCDHB8	56128	hgsc.bcm.edu	37	chr5	140559572	140559572	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggacaatggcgagcctccgTgctcggccaccgccacgctg	7	5	13	16	5	0	0	0	0	0	0	2	2	1	1	5	3	2	2	5	3	1	0	rs17844504	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PCDHB8,NS,malignant_melanoma,0,1	PCDHB8	NM_019120	exon1	c.T1957C	p.C653R	CCTCCGTGCTCGG	.	74	3	84	1	.	0	C	140559572	T	C	140559572	3	2	29	1	0	0	0	0	1	0	0	0	11595	1696	59	4	1959	4	PCDHB8	5	140559572	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	59835094	140559572	40355688	36	4562											
FAM153C	653316	hgsc.bcm.edu	37	chr5	177434138	177434138	+	RNA	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggatcacggattgggggttGgatcgcggattggggtttgg	5	12	20	4	3	1	0	1	0	0	0	2	4	1	4	0	9	0	2	0	9	0	4	rs144285503	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GGGGTTGGATCGC	.	16	4	10	0	.	.	A	177434138	G	A	177434138	1	1	29	0	1	0	0	0	0	0	0	0	5492	1363	47	3		3	FAM153C	5	177434138	RNA	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	36874566	177434138	3481122	37	4563											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117663599	117663599	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tccccaaatctcttttcctgGtggtaaatgttccaaaggat	10	14	7	10	0	1	0	0	0	1	0	5	1	4	1	4	3	0	2	4	3	4	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002944	exon28	c.C4633T	p.P1545S	TTCCTGGTGGTAA	.	121	41	197	0	.	.	A	117663599	G	A	117663599	3	1	29	1	0	0	0	0	1	0	0	0	13583	1261	44	3	2474	3	ROS1	6	117663599	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		117663599	53451468	38	4564											
DCBLD1	285761	hgsc.bcm.edu	37	chr6	117861861	117861861	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gtaactctaactttcgggacCcagtgcaaaacaatttcatc	13	11	6	11	1	2	0	1	0	1	0	4	1	2	1	1	1	4	2	1	1	5	4	rs150272298	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173674	exon10	c.C1132T	p.P378S	CGGGACCCAGTGC	.	97	4	130	0	.	.	T	117861861	C	T	117861861	3	4	29	1	0	0	0	0	1	0	0	0	4303	623	22	3	1170	3	DCBLD1	6	117861861	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	198262	117861861	53253206	39	4565											
PNLDC1	154197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	160240039	160240039	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctcatcctcagcgtcaaaaGgtggcctggggtcagcgagc	8	7	13	13	2	4	0	4	0	0	0	5	1	5	0	3	4	3	0	3	4	2	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173516	exon17	c.G1286T	p.R429M	TCAAAAGGTGGCC	.	22	9	50	0	.	.	T	160240039	G	T	160240039	3	4	29	1	0	0	0	0	1	0	0	0	12196	1000	35	3	1348	3	PNLDC1	6	160240039	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	42378178	160240039	10875028	40	4566											
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26237321	26237321	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tttcaaagcttaagccaccaAtaaagagcttacggaactgt	15	10	7	9	1	1	1	1	0	0	1	1	2	1	2	2	1	5	2	2	1	7	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_031243	exon3	c.T74C	p.I25T	CCACCAATAAAGA	.	66	41	154	0	.	.	G	26237321	A	G	26237321	3	3	29	1	0	0	0	0	1	0	0	0	7300	101	4	4	1023	4	HNRNPA2B1	7	26237321	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09		26237321	132901342	41	4567											
PTPN12	5782	hgsc.bcm.edu	37	chr7	77230111	77230111	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acatgaagatgttcctatttGtattcattgcaggtacaaaa	14	14	7	6	0	1	2	1	1	0	1	2	2	2	2	1	1	2	4	1	1	6	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PTPN12,NS,carcinoma,0,1	PTPN12	NM_002835	exon8	c.G683T	p.C228F	CTATTTGTATTCA	.	36	2	70	0	.	0	T	77230111	G	T	77230111	3	4	29	1	0	0	0	0	1	0	0	0	12831	1377	48	3	713	3	PTPN12	7	77230111	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	50992790	77230111	81908552	42	4568											
PCLO	27445	broad.mit.edu	37	chr7	82545128	82545128	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgcttaatgccgctgtTcctttggtgatctctccaat	5	15	10	11	2	1	1	0	1	1	0	4	1	3	1	3	2	2	3	3	2	2	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PCLO	NM_014510	exon7	c.A12174C	p.G4058G	CGCTGTTCCTTTG	.	33	3	57	0	.	1506	G	82545128	T	G	82545128	2	3	29	1	0	0	0	0	0	0	0	1	11630	1770	62	4		4	PCLO	7	82545128	Silent	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	5315017	82545128	76593535	43	4569											
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100198331	100198331	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	accccggggggatggcccagGcctgcgaggagtacctcagc	7	4	16	14	2	1	0	1	0	0	0	1	3	1	2	5	6	3	1	5	6	1	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_012172	exon10	c.G1666A	p.A556T	GCCCAGGCCTGCG	.	32	15	49	0	.	.	A	100198331	G	A	100198331	3	1	29	1	0	0	0	0	1	0	0	0	5768	1203	42	3	1747	3	FBXO24	7	100198331	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	17653203	100198331	58940332	44	4570											
CUX1	1523	hgsc.bcm.edu	37	chr7	101845271	101845271	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agctcagagctgagtctgacCggggccagccgcagcgagac	9	4	15	13	3	2	4	1	2	1	2	2	5	2	4	3	2	4	3	3	2	0	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CUX1,colon,carcinoma,0,1	CUX1	NM_001202543	exon18	c.C2727T	p.T909T	TCTGACCGGGGCC	.	70	2	110	0	.	0	T	101845271	C	T	101845271	2	4	29	1	0	0	0	0	0	0	0	1	4087	639	23	1		1	CUX1	7	101845271	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	1646940	101845271	57293392	45	4571											
ASH2L	9070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	37996519	37996519	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gggcgccgtggtagagcacaCcctggctgacgtcttgtatc	6	9	14	12	3	1	2	0	1	1	1	2	2	1	2	2	3	1	4	2	3	2	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_004674	exon16	c.C1817A	p.T606N	AGCACACCCTGGC	.	32	11	61	0	.	.	A	37996519	C	A	37996519	3	1	29	1	0	0	0	0	1	0	0	0	1041	507	18	3	1879	3	ASH2L	8	37996519	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		37996519	108367503	46	4572											
SLC20A2	6575	hgsc.bcm.edu	37	chr8	42287686	42287686	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	actcctccataaaacagcagCcagacgggtgtagctgcttc	11	8	9	13	1	0	1	0	0	0	1	3	1	2	1	3	1	5	4	3	1	3	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SLC20A2,NS,carcinoma,0,1	SLC20A2	NM_001257181	exon9	c.G1605A	p.W535X	CAGCAGCCAGACG	.	69	3	123	0	.	0	T	42287686	C	T	42287686	4	4	29	1	0	0	0	0	0	1	0	0	14494	740	26	3	365	3	SLC20A2	8	42287686	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	4291167	42287686	104076336	47	4573											
EXOSC4	54512	hgsc.bcm.edu	37	chr8	145133719	145133719	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcaagatccaggcgcggatgGgcgtgttcgcgcaggctgac	7	6	17	11	5	0	2	0	1	0	1	2	3	1	3	1	4	0	4	1	4	1	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	EXOSC4,colon,carcinoma,0,1	EXOSC4	NM_019037	exon1	c.G88T	p.G30C	CGGATGGGCGTGT	.	17	3	22	0	.	0	T	145133719	G	T	145133719	3	4	29	1	0	0	0	0	1	0	0	0	5344	1232	43	3	90	3	EXOSC4	8	145133719	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	102846033	145133719	1230303	48	4574											
NOTCH1	4851	broad.mit.edu	37	chr9	139399225	139399225	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcagggcgtcaggtgCggcccagccctcggcggcac	5	3	16	17	4	1	0	1	0	0	0	2	0	1	0	3	5	3	2	3	5	0	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	NOTCH1,NS,lymphoid_neoplasm,0,1	NOTCH1	NM_017617	exon26	c.G4918A	p.A1640T	CAGGTGCGGCCCA	.	26	3	53	0	.	1980	T	139399225	C	T	139399225	3	4	29	1	0	0	0	0	1	0	0	0	10594	768	27	1	2785	1	NOTCH1	9	139399225	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		139399225	1814206	49	4575											
PRKCQ	5588	broad.mit.edu	37	chr10	6527117	6527117	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctgatcaggacagctacctcTttttcccggtgtcggtaaac	8	12	9	12	2	2	1	1	1	1	0	4	2	3	2	2	3	3	2	2	3	3	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PRKCQ	NM_006257	exon10	c.A1015G	p.R339G	TACCTCTTTTTCC	.	62	3	113	0	.	113	C	6527117	T	C	6527117	3	2	29	1	0	0	0	0	1	0	0	0	12567	1617	56	4	1141	4	PRKCQ	10	6527117	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09		6527117	129007630	50	4576											
ITGB1	3688	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	33211229	33211229	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aattacattgctagaatttgCagataatgttcctactgctg	12	15	7	7	0	0	2	0	0	0	2	1	2	1	2	1	0	5	4	1	0	6	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002211	exon9	c.G1084A	p.A362T	AATTTGCAGATAA	.	40	4	71	0	.	.	T	33211229	C	T	33211229	3	4	29	1	0	0	0	0	1	0	0	0	7934	710	25	3	1582	3	ITGB1	10	33211229	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	26684112	33211229	102323518	51	4577											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	54040674	54040674	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aaatctcatcctagatcaccGaggttatgccaaactggtca	13	10	7	11	1	3	1	3	0	1	1	5	2	4	1	3	2	2	1	3	2	4	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_006258	exon13	c.G1529A	p.R510Q	ATCACCGAGGTTA	.	56	5	90	0	.	.	A	54040674	G	A	54040674	3	1	29	1	0	0	0	0	1	0	0	0	12574	1058	37	1	1849	1	PRKG1	10	54040674	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	20829445	54040674	81494073	52	4578											
CDH23	64072	hgsc.bcm.edu	37	chr10	73468897	73468897	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cagcgtgggttaccgcgatgCcgttgtgagaaccgtggtgg	6	9	17	9	5	0	1	0	1	0	1	0	3	0	1	3	3	4	2	3	3	2	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CDH23,NS,carcinoma,0,1	CDH23	NM_022124	exon26	c.C3149T	p.A1050V	GCGATGCCGTTGT	.	32	2	94	0	.	0	T	73468897	C	T	73468897	3	4	29	1	0	0	0	0	1	0	0	0	3130	739	26	3	3558	3	CDH23	10	73468897	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	19428223	73468897	62065850	53	4579											
BTRC	8945	hgsc.bcm.edu	37	chr10	103281468	103281468	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tctcagcaagctatgaaaagGaaaaggaactgtgtgtcaaa	17	8	10	6	0	2	1	2	1	1	0	3	3	2	3	0	2	3	2	0	2	8	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	BTRC,NS,carcinoma,0,1	BTRC	NM_033637	exon5	c.G397A	p.E133K	GAAAAGGAAAAGG	.	36	2	122	0	.	0	A	103281468	G	A	103281468	3	1	29	1	0	0	0	0	1	0	0	0	1572	1175	41	3	415	3	BTRC	10	103281468	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	29812571	103281468	32253279	54	4580											
CUZD1	50624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124594545	124594545	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tggagttgtttctgacgggtGatcacttcagaagttgagga	9	13	14	5	1	3	4	2	3	1	1	3	6	3	6	0	3	0	3	0	3	1	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	CUZD1	NM_022034	exon7	c.C1059T	p.I353I	ACGGGTGATCACT	.	60	24	89	0	.	82	A	124594545	G	A	124594545	2	1	29	1	0	0	0	0	0	0	0	1	4089	1280	45	3		3	CUZD1	10	124594545	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	21313077	124594545	10940202	55	4581											
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	129913724	129913724	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acgtctcttcccttccccttGttctggtcaagctcttgttc	3	17	6	15	1	4	0	1	0	3	0	8	0	6	0	3	1	1	3	3	1	1	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MKI67	NM_002417	exon7	c.C948A	p.N316K	CCCCTTGTTCTGG	.	41	20	61	1	.	363	T	129913724	G	T	129913724	3	4	29	1	0	0	0	0	1	0	0	0	9646	1368	48	3	8858	3	MKI67	10	129913724	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	5319179	129913724	5621023	56	4582											
MUC5B	727897	broad.mit.edu;bcgsc.ca	37	chr11	1269861	1269861	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggaccacccacacccccacAgtgctgaccaccaccaccac	11	2	6	22	0	0	1	0	1	0	0	0	2	0	2	8	1	1	1	8	1	0	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MUC5B	NM_002458	exon31	c.A11751G	p.T3917T	CCCCACAGTGCTG	.	124	48	186	0	.	473	G	1269861	A	G	1269861	2	3	29	1	0	0	0	0	0	0	0	1	10027	175	7	4		4	MUC5B	11	1269861	Silent	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09		1269861	133736655	57	4583											
TRIM68	55128	broad.mit.edu	37	chr11	4626749	4626749	+	Translation_Start_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	atccatggttccttctcacaCcctcctcagaacatgaatga	11	11	5	14	0	2	3	2	2	1	1	6	3	5	3	4	1	1	1	4	1	2	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRIM68	.	.	.	.	CTCACACCCTCCT	.	11	4	16	0	.	53	T	4626749	C	T	4626749	1	4	29	1	0	0	0	0	0	0	0	0	16602	522	18	3		3	TRIM68	11	4626749	Translation_Start_Site	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	3356888	4626749	130379767	58	4584											
OR52E8	390079	hgsc.bcm.edu	37	chr11	5878458	5878458	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaacaaccatgtacaGgctcctcaggacagcaatgc	13	6	10	12	0	1	0	1	0	0	0	2	2	2	2	2	3	5	3	2	3	4	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	29	2	50	0	.	0	A	5878458	G	A	5878458	2	1	29	1	0	0	0	0	0	0	0	1	11166	991	35	3		3	OR52E8	11	5878458	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	1251709	5878458	129128058	59	4585											
MRVI1	10335	hgsc.bcm.edu;ucsc.edu	37	chr11	10597537	10597537	+	RNA	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccccctacctcctcctccccCgtgccccgctccttaccccc	2	8	3	28	2	0	0	0	0	0	0	4	0	4	0	12	0	3	1	12	0	2	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	CTCCCCCGTGCCC	.	41	9	98	0	.	.	T	10597537	C	T	10597537	1	4	29	0	1	0	0	0	0	0	0	0	9902	667	23	1		1	MRVI1	11	10597537	RNA	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	4719079	10597537	124408979	60	4586											
EIF4G2	1982	hgsc.bcm.edu	37	chr11	10822519	10822519	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tggtctgtacctgtcccagaGgtggtgtttgagtgcgtggt	4	14	16	7	1	1	2	0	1	1	1	2	2	2	2	2	4	2	2	2	4	1	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001172705	exon15	c.C1529A	p.P510H	CCCAGAGGTGGTG	.	76	4	101	0	.	.	T	10822519	G	T	10822519	3	4	29	1	0	0	0	0	1	0	0	0	5065	1000	35	3	1226	3	EIF4G2	11	10822519	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	224982	10822519	124183997	61	4587											
OR5L2	26338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55595251	55595251	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatctaccccctctcctaaGtcttgcttgctctgatgtca	6	15	6	14	0	5	2	1	2	4	0	6	2	5	2	3	0	3	2	3	0	2	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OR5L2,NS,carcinoma,+1,1	OR5L2	NM_001004739	exon1	c.G557A	p.S186N	TCCTAAGTCTTGC	.	36	15	86	0	.	135	A	55595251	G	A	55595251	3	1	29	1	0	0	0	0	1	0	0	0	11218	1029	36	3	559	3	OR5L2	11	55595251	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	44772732	55595251	79411265	62	4588											
SSRP1	6749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57100235	57100235	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccgaatgtcataacgaccaCgaggagtcagacactgcagc	13	6	10	12	3	2	1	2	0	0	1	3	5	3	2	2	1	3	1	2	1	2	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_003146	exon6	c.G632T	p.R211L	CGACCACGAGGAG	.	42	18	57	0	.	.	A	57100235	C	A	57100235	3	1	29	1	0	0	0	0	1	0	0	0	15250	536	19	2	1545	2	SSRP1	11	57100235	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	1504984	57100235	77906281	63	4589											
SLC3A2	6520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62655849	62655849	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctttccttgttccggcggcTgagtgaccagcggagtaagg	6	10	14	11	3	0	2	0	2	0	0	2	3	2	3	4	4	1	3	4	4	1	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001012662	exon12	c.T1580C	p.L527P	GGCGGCTGAGTGA	.	52	18	89	0	.	.	C	62655849	T	C	62655849	3	2	29	1	0	0	0	0	1	0	0	0	14682	1580	55	4	1723	4	SLC3A2	11	62655849	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	5555614	62655849	72350667	64	4590											
RPS3	6188	broad.mit.edu;bcgsc.ca	37	chr11	75113481	75113481	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caaactcctaggagggcttgCtgtgcggaggtaagtgtcct	8	10	14	9	1	0	0	0	0	0	0	2	2	2	2	2	4	3	3	2	4	3	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	RPS3	NM_001260506	exon4	c.C389T	p.A130V	GGCTTGCTGTGCG	.	36	4	62	0	.	20	T	75113481	C	T	75113481	3	4	29	1	0	0	0	0	1	0	0	0	13695	797	28	3	355	3	RPS3	11	75113481	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	12457632	75113481	59893035	65	4591											
HEPHL1	341208	hgsc.bcm.edu	37	chr11	93834378	93834378	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taggcccaatgattcatgctGaggtgggcaacaccgtcctg	9	9	12	11	1	1	2	1	2	0	0	2	2	2	2	3	3	2	2	3	3	3	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001098672	exon14	c.G2452T	p.E818X	CATGCTGAGGTGG	.	47	4	81	0	.	.	T	93834378	G	T	93834378	4	4	29	1	0	0	0	0	0	1	0	0	7096	1291	45	3	2506	3	HEPHL1	11	93834378	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	18720897	93834378	41172138	66	4592											
FOXRED1	55572	broad.mit.edu	37	chr11	126139308	126139308	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	agtgggtcggcttggggaagGgggttagcttacctaccaga	8	9	17	7	1	0	1	0	0	0	1	1	2	0	2	2	6	3	3	2	6	4	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	FOXRED1	.	.	.	.	GGGAAGGGGGTTA	.	8	4	19	0	.	38	T	126139308	G	T	126139308	3	4	29	1	0	0	0	0	1	0	0	0	6067	1247	43	3		3	FOXRED1	11	126139308	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	32304930	126139308	8867208	67	4593											
KCNJ5	3762	broad.mit.edu	37	chr11	128781861	128781861	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgcaactcccacatcgtggaGgcctccatccgggccaagct	8	6	10	17	3	0	0	0	0	0	0	4	1	3	1	5	3	2	2	5	3	2	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	KCNJ5	NM_000890	exon2	c.G693T	p.E231D	CGTGGAGGCCTCC	.	37	4	48	2	.	560	T	128781861	G	T	128781861	3	4	29	1	0	0	0	0	1	0	0	0	8098	991	35	3	695	3	KCNJ5	11	128781861	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	2642553	128781861	6224655	68	4594											
KCNH3	23416	hgsc.bcm.edu	37	chr12	49948260	49948260	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagccttgcgctgtaccccGagtttgccccgcgcttcagt	5	10	10	16	4	1	0	1	0	0	0	1	1	1	0	5	0	4	4	5	0	1	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KCNH3,rectum,carcinoma,0,1	KCNH3	NM_012284	exon11	c.G2059T	p.E687X	TACCCCGAGTTTG	.	47	2	74	0	.	0	T	49948260	G	T	49948260	4	4	29	1	0	0	0	0	0	1	0	0	8077	1059	37	2	2101	2	KCNH3	12	49948260	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		49948260	83903635	69	4595											
ITGA7	3679	hgsc.bcm.edu	37	chr12	56090083	56090083	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcacctctgcccgctgggtgCtgggctggtgggcattgagg	3	10	17	11	1	2	1	1	1	1	0	2	1	2	1	2	5	2	4	2	5	0	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ITGA7,colon,carcinoma,0,1	ITGA7	NM_001144996	exon13	c.G1883A	p.S628N	TGGGTGCTGGGCT	.	47	2	97	0	.	0	T	56090083	C	T	56090083	3	4	29	1	0	0	0	0	1	0	0	0	7925	797	28	3	1594	3	ITGA7	12	56090083	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	6141823	56090083	77761812	70	4596											
TRAFD1	10906	ucsc.edu;bcgsc.ca	37	chr12	112583461	112583461	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cagaggaactgctgattgacCatcaggtgtgttatgaatta	12	12	11	6	0	1	4	1	3	0	1	1	5	1	5	1	2	2	2	1	2	4	3	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRAFD1	NM_001143906	exon7	c.C922T	p.H308Y	ATTGACCATCAGG	.	41	4	88	1	.	42	T	112583461	C	T	112583461	3	4	29	1	0	0	0	0	1	0	0	0	16508	594	21	3	944	3	TRAFD1	12	112583461	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	56493378	112583461	21268434	71	4597											
IPO5	3843	hgsc.bcm.edu	37	chr13	98671935	98671935	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctcagcagtagggaaaatCatgaagttcaagcctgactg	14	9	10	8	0	3	2	3	2	1	0	4	3	3	3	1	1	2	3	1	1	5	2	rs145166442	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	IPO5,arm,malignant_melanoma,0,1	IPO5	NM_002271	exon27	c.C2991A	p.I997I	GAAAATCATGAAG	.	37	2	76	0	.	0	A	98671935	C	A	98671935	2	1	29	1	0	0	0	0	0	0	0	1	7840	816	29	3		3	IPO5	13	98671935	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		98671935	16497943	72	4598											
TRIP11	9321	hgsc.bcm.edu	37	chr14	92469882	92469882	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttagtctcttgtaacgcttGatattctgtttcctttcccc	5	19	6	11	1	2	1	0	1	2	0	5	1	4	1	3	0	1	4	3	0	3	8	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_004239	exon11	c.C4438A	p.Q1480K	ACGCTTGATATTC	.	90	4	145	0	.	.	T	92469882	G	T	92469882	3	4	29	1	0	0	0	0	1	0	0	0	16616	1299	45	3	1545	3	TRIP11	14	92469882	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		92469882	14879658	73	4599											
SHF	90525	broad.mit.edu	37	chr15	45479775	45479775	+	Frame_Shift_Del	DEL	G	G	-																															cgcgggggcggcgtgggtccGggggcgacaggggtggcgag																								novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	SHF	.	.	.	.	GGGTCCGGGGGCG	.	5	1	4	0	.	27	-	45479775	G	-	45479775	7	5	29	1	0	1	0	1	0	0	0	0	14332	1131	39	0		0	SHF	15	45479775	Frame_Shift_Del	DEL	G	TCGA-ZH-A8Y1-01A-11D-A417-09		45479775	57051617	74	4600											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	54305275	54305275	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cccccaaattttcttacactTttaaaagcactgtaaagaag	15	12	4	10	0	1	1	0	0	1	1	1	1	1	1	2	0	2	2	2	0	7	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001080534	exon1	c.T175A	p.F59I	TACACTTTTAAAA	.	114	38	178	0	.	.	A	54305275	T	A	54305275	3	1	29	1	0	0	0	0	1	0	0	0	17046	1841	64	5	177	5	UNC13C	15	54305275	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	8825500	54305275	48226117	75	4601											
LRRC49	54839	hgsc.bcm.edu	37	chr15	71341747	71341747	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	actttctcttttttttaacaGgaaataaaggaaaagaagaa	18	13	6	4	0	1	2	0	0	1	2	2	4	1	4	0	2	1	0	0	2	8	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	LRRC49,NS,carcinoma,0,1	LRRC49	NM_001199017	exon16	c.1873-1G>T	.	TTAACAGGAAATA	.	48	2	105	0	.	0	T	71341747	G	T	71341747	5	4	29	1	0	0	0	0	0	0	1	0	9051	1014	35	3	1919	3	LRRC49	15	71341747	Splice_Site	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	17036472	71341747	31189645	76	4602											
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20843488	20843488	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttcttcaagattgcagaacTaaatctagaagcactagcta	15	12	6	8	0	3	3	1	0	2	3	3	3	3	3	0	0	4	3	0	0	8	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	LOC81691	NM_030941	exon12	c.T1169C	p.L390P	CAGAACTAAATCT	.	75	9	144	0	.	41	C	20843488	T	C	20843488	3	2	29	1	0	0	0	0	1	0	0	0	8935	1522	53	4	1211	4	LOC81691	16	20843488	Missense_Mutation	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09		20843488	69511265	77	4603											
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57762447	57762447	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tgagtgcctcagcgacttcaAgcagcggctcatcaacaagg	11	7	11	12	2	4	1	4	1	0	0	4	2	4	1	1	2	5	2	1	2	3	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_032269	exon16	c.A2342T	p.K781M	ACTTCAAGCAGCG	.	27	18	64	0	.	.	T	57762447	A	T	57762447	3	4	29	1	0	0	0	0	1	0	0	0	2787	72	3	5	2400	5	CCDC135	16	57762447	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	36918959	57762447	32592306	78	4604											
GUCY2D	3000	hgsc.bcm.edu	37	chr17	7917239	7917239	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcccccctccactgtgtcggCccttggtgtccatggaccag	4	9	11	17	1	0	0	0	0	0	0	3	1	2	1	7	3	0	0	7	3	0	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	GUCY2D_ENST00000254854,NS,haematopoietic_neoplasm,0,1	GUCY2D_ENST00000254854	NM_000180	exon12	c.C2305A	p.P769T	TGTCGGCCCTTGG	.	22	2	38	0	.	0	A	7917239	C	A	7917239	3	1	29	1	0	0	0	0	1	0	0	0	6938	739	26	3	2347	3	GUCY2D	17	7917239	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		7917239	73277971	79	4605											
PER1	5187	hgsc.bcm.edu	37	chr17	8046029	8046029	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	aaccagacccagagcccaagCcagagcccaaggagcccgag	14	0	11	16	1	0	3	0	0	0	3	0	5	0	4	6	1	5	0	6	1	3	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PER1,NS,carcinoma,0,1	PER1	NM_002616	exon20	c.G3197A	p.G1066D	CCCAAGCCAGAGC	.	68	3	135	0	.	0	T	8046029	C	T	8046029	3	4	29	1	0	0	0	0	1	0	0	0	11776	739	26	3	691	3	PER1	17	8046029	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	128790	8046029	73149181	80	4606											
RNF112	7732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19319066	19319066	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgctgcgggtcctgccagacAccatgcggaacctcctctcc	6	7	10	18	3	1	1	0	0	1	1	4	2	3	2	6	2	4	1	6	2	1	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_007148	exon14	c.A1474G	p.T492A	CCAGACACCATGC	.	27	9	55	0	.	.	G	19319066	A	G	19319066	3	3	29	1	0	0	0	0	1	0	0	0	13478	159	6	4	1238	4	RNF112	17	19319066	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	11273037	19319066	61876144	81	4607											
UTP6	55813	hgsc.bcm.edu;bcgsc.ca	37	chr17	30192441	30192441	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cataatattctcttatgttcGccatattgcaggattcctga	10	16	6	9	1	1	1	0	1	1	0	4	2	2	2	2	1	1	2	2	1	4	8	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018428	exon18	c.C1580A	p.A527E	ATGTTCGCCATAT	.	61	4	104	0	.	.	T	30192441	G	T	30192441	3	4	29	1	0	0	0	0	1	0	0	0	17162	1087	38	2	221	2	UTP6	17	30192441	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	10873375	30192441	51002769	82	4608											
COG1	9382	bcgsc.ca	37	chr17	71192846	71192846	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tacagtcccgtcctctcccgGtttcctatactcatccggca	6	12	6	17	3	2	0	1	0	1	0	7	0	6	0	5	2	2	2	5	2	3	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	COG1	NM_018714	exon2	c.G516A	p.R172R	CTCCCGGTTTCCT	.	18	3	55	0	.	46	A	71192846	A	A	71192846	2	1	29	1	0	0	0	0	0	0	0	1	3680	1248	44	3		3	COG1	17	71192846	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	41000405	71192846	10002364	83	4609											
MOCOS	55034	hgsc.bcm.edu	37	chr18	33831179	33831179	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tggttgtcaacattttttggCcgtccttgtcatttgatcaa	7	18	8	8	1	3	1	3	1	0	0	4	1	4	1	2	2	1	1	2	2	2	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_017947	exon11	c.C2097T	p.G699G	TTTTGGCCGTCCT	.	96	4	141	0	.	.	T	33831179	C	T	33831179	2	4	29	1	0	0	0	0	0	0	0	1	9738	726	26	3		3	MOCOS	18	33831179	Silent	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		33831179	44246069	84	4610											
PHLPP1	23239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	60562326	60562326	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tctgcagtattccaaccctgGcagagctgaacgtgtcctgc	8	10	10	13	1	1	2	0	1	1	1	3	2	3	2	3	1	5	4	3	1	3	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_194449	exon5	c.G2149C	p.A717P	ACCCTGGCAGAGC	.	38	24	124	0	.	.	C	60562326	G	C	60562326	3	2	29	1	0	0	0	0	1	0	0	0	11902	1203	42	5	2167	5	PHLPP1	18	60562326	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	26731147	60562326	17514922	85	4611											
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11594920	11594920	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	ggtggttcttcctcttgaagGacttgccgcaggtctcgcag	5	12	13	11	2	3	1	0	1	3	0	5	2	4	2	2	4	1	3	2	4	1	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_138783	exon8	c.C1607G	p.S536C	TTGAAGGACTTGC	.	45	18	68	0	.	.	C	11594920	G	C	11594920	3	2	29	1	0	0	0	0	1	0	0	0	18123	1174	41	5	248	5	ZNF653	19	11594920	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		11594920	47534063	86	4612											
BEST2	54831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12865559	12865559	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cgctccgtcagcaccgcggtGttcaagcgcttccccaccat	6	8	9	18	5	2	0	2	0	0	0	4	0	4	0	5	1	2	4	5	1	1	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_017682	exon3	c.G441C	p.V147V	CGCGGTGTTCAAG	.	58	21	66	0	.	.	C	12865559	G	C	12865559	2	2	29	1	0	0	0	0	0	0	0	1	1403	1364	48	5		5	BEST2	19	12865559	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	1270639	12865559	46263424	87	4613											
MAST3	23031	hgsc.bcm.edu	37	chr19	18234175	18234175	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctccgaccccgctctcGcagtctcaggtgggccgcga	4	6	12	19	6	2	0	1	0	2	0	5	2	3	0	6	2	0	2	6	2	0	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	MAST3,NS,carcinoma,0,1	MAST3	NM_015016	exon6	c.G461A	p.R154H	GCTCTCGCAGTCT	.	29	2	24	0	.	0	A	18234175	G	A	18234175	3	1	29	1	0	0	0	0	1	0	0	0	9376	1087	38	1	483	1	MAST3	19	18234175	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	5368616	18234175	40894808	88	4614											
ZNF253	56242	hgsc.bcm.edu	37	chr19	20002885	20002885	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	accttactacacataagataGttcatactggagagaaaccc	16	9	6	10	0	1	2	1	0	0	2	1	4	1	3	2	1	4	1	2	1	6	6	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ZNF492,NS,carcinoma,0,4	ZNF492	NM_021047	exon4	c.G829T	p.V277F	AAGATAGTTCATA	.	45	2	64	0	.	0	T	20002885	G	T	20002885	3	4	29	1	0	0	0	0	1	0	0	0	17855	1029	36	3	843	3	ZNF253	19	20002885	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	1768710	20002885	39126098	89	4615											
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37367894	37367894	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtatccagcatcagagAattcatactgatgagaaact	15	11	7	8	0	3	3	3	2	0	2	4	5	4	3	1	0	3	2	1	0	4	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001242476	exon4	c.A162T	p.R54S	TCAGAGAATTCAT	.	73	25	105	0	.	.	T	37367894	A	T	37367894	3	4	29	1	0	0	0	0	1	0	0	0	17916	243	9	5	164	5	ZNF345	19	37367894	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	17365009	37367894	21761089	90	4616											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42489123	42489123	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggccacgatgatgccgatgaGgaagatgacagcctcaagcc	12	5	13	11	2	1	4	1	3	0	1	1	7	1	5	4	2	3	0	4	2	2	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001256214	exon8	c.C979G	p.L327V	CGATGAGGAAGAT	.	33	10	61	0	.	.	C	42489123	G	C	42489123	3	2	29	1	0	0	0	0	1	0	0	0	1129	1000	35	5	2165	5	ATP1A3	19	42489123	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	5121229	42489123	16639860	91	4617											
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu	37	chr19	51918507	51918507	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gtggcaggtgaactctccttCgtgctccacttgaacccgag	7	10	11	13	2	1	2	0	2	1	0	4	3	2	2	3	2	3	2	3	2	2	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SIGLEC12_ENST00000439889,NS,malignant_melanoma,0,2	SIGLEC12_ENST00000439889	NM_001171157	exon7	c.G1258A	p.E420K	CTCCTTCGTGCTC	.	71	5	110	1	.	0	T	51918507	C	T	51918507	3	4	29	1	0	0	0	0	1	0	0	0	14361	893	31	1	855	1	SIGLEC10	19	51918507	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	9429384	51918507	7210476	92	4618											
SNPH	9751	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	1277062	1277062	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acggacctctgctggatcacGcaggtgagtctccccctcgc	6	8	11	16	3	3	1	1	1	2	0	5	3	3	3	3	3	1	2	3	3	0	0	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014723	exon3	c.G47T	p.R16L	GATCACGCAGGTG	.	79	7	111	0	.	.	T	1277062	G	T	1277062	3	4	29	1	0	0	0	0	1	0	0	0	14904	1087	38	2	49	2	SNPH	20	1277062	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09		1277062	61748458	93	4619											
RPRD1B	58490	hgsc.bcm.edu	37	chr20	36687879	36687879	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgacagaaaattgcttctctGccccaggaagtgcaagatgt	12	9	10	10	1	1	2	0	0	1	2	2	4	1	3	2	1	3	2	2	1	4	2	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.,1	.	NM_021215	exon5	c.G612T	p.L204L	TTCTCTGCCCCAG	.	47	2	88	0	.	25	T	36687879	G	T	36687879	2	4	29	1	0	0	0	0	0	0	0	1	13668	1306	46	3		3	RPRD1B	20	36687879	Silent	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	35410817	36687879	26337641	94	4620											
SLPI	6590	hgsc.bcm.edu	37	chr20	43882219	43882219	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ttccccgacctgcttacttgGgtttggggtgtcaacaggat	6	13	12	10	1	1	0	1	0	0	0	2	2	2	1	3	4	3	2	3	4	2	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SLPI,NS,carcinoma,0,1	SLPI	NM_003064	exon2	c.C241A	p.P81T	TACTTGGGTTTGG	.	43	2	59	0	.	0	T	43882219	G	T	43882219	3	4	29	1	0	0	0	0	1	0	0	0	14807	1232	43	3	169	3	SLPI	20	43882219	Missense_Mutation	SNP	G	TCGA-ZH-A8Y1-01A-11D-A417-09	7194340	43882219	19143301	95	4621											
UFD1L	7353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19455397	19455397	+	Splice_Site	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttatttgaaaaagatacaCggctttggggttggtgatgt	10	14	13	4	1	0	3	0	2	0	1	0	3	0	3	0	4	1	3	0	4	4	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	UFD1L	NM_001035247	exon5	c.G421A	p.V141I	GATACACGGCTTT	.	61	21	100	0	.	25	T	19455397	C	T	19455397	5	4	29	1	0	0	0	0	0	0	1	0	16995	550	19	1	534	1	UFD1L	22	19455397	Splice_Site	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09		19455397	31849169	96	4622											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	51639969	51639969	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtcctcctgactggccgctAccacccgactggccactgcc	5	7	10	19	2	0	1	0	1	0	0	2	2	2	1	7	3	2	1	7	3	1	1	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001005333	exon5	c.A1386G	p.L462L	GCCGCTACCACCC	.	60	20	85	0	.	.	G	51639969	A	G	51639969	2	3	29	1	0	0	0	0	0	0	0	1	9233	378	14	4		4	MAGED1	23	51639969	Silent	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09		51639969	103630591	97	4623											
MSN	4478	ucsc.edu;bcgsc.ca	37	chrX	64949502	64949502	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcgtatgctgtccagtCtaagtatggcgacttcaata	9	12	10	10	2	2	0	1	0	1	0	4	1	3	0	2	2	1	3	2	2	5	5	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MSN	NM_002444	exon4	c.C395A	p.S132Y	TCCAGTCTAAGTA	.	28	4	67	0	.	89	A	64949502	C	A	64949502	3	1	29	1	0	0	0	0	1	0	0	0	9933	913	32	3	409	3	MSN	23	64949502	Missense_Mutation	SNP	C	TCGA-ZH-A8Y1-01A-11D-A417-09	13309533	64949502	90321058	98	4624											
HDX	139324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	83723901	83723901	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtggggcatttcctcccagaAttctctgggggtaatcgcta	7	12	12	10	1	1	1	0	0	1	1	5	1	3	1	2	4	0	3	2	4	3	4	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_144657	exon3	c.T830G	p.I277S	CCCAGAATTCTCT	.	62	5	105	0	.	.	C	83723901	A	C	83723901	3	2	29	1	0	0	0	0	1	0	0	0	7067	101	4	4	1274	4	HDX	23	83723901	Missense_Mutation	SNP	A	TCGA-ZH-A8Y1-01A-11D-A417-09	18774399	83723901	71546659	99	4625											
RBMX	27316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	135956307	135956307	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttttgtttgtttctagtaTctgcttctgcctccccctct	3	20	6	12	0	4	0	0	0	4	0	5	0	5	0	3	0	2	5	3	0	2	7	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002139	exon9	c.A1170G	p.R390R	CTAGTATCTGCTT	.	104	31	171	0	.	.	C	135956307	T	C	135956307	2	2	29	1	0	0	0	0	0	0	0	1	13203	1432	50	4		4	RBMX	23	135956307	Silent	SNP	T	TCGA-ZH-A8Y1-01A-11D-A417-09	52232406	135956307	19314253	100	4626											
CAMTA1	23261	broad.mit.edu	37	chr1	7811427	7811427	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gacggcaggctcgccggacgGctgtgattgtacaacagaaa	11	6	14	10	4	0	2	0	1	0	1	1	4	0	3	1	4	2	4	1	4	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	CAMTA1	NM_015215	exon20	c.G4858A	p.A1620T	CGGACGGCTGTGA	.	28	3	44	0	.	226	A	7811427	G	A	7811427	3	1	30	1	0	0	0	0	1	0	0	0	2631	1203	42	3	4936	3	CAMTA1	1	7811427	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		7811427	241439194	1	4627											
PER3	8863	bcgsc.ca	37	chr1	7890026	7890026	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacaggatcgcctcccatgAagaatccatcccatcctact	11	8	5	17	1	0	2	0	1	0	1	5	3	4	3	6	1	1	0	6	1	3	1	rs199947375	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PER3,NS,carcinoma,0,4	PER3	NM_016831	exon18	c.A2992G	p.K998E	CCCATGAAGAATC	.	25	6	48	0	.	95	G	7890026	G	G	7890026	3	3	30	1	0	0	0	0	1	0	0	0	11778	247	9	4	3062	4	PER3	1	7890026	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	78599	7890026	241360595	2	4628											
PTCHD2	57540	hgsc.bcm.edu	37	chr1	11596598	11596598	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgccctgctgggcatcatggCgcccagctctttcactcgga	5	9	11	16	3	3	0	2	0	1	0	4	1	3	1	2	3	2	3	2	3	0	1	rs201820638	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PTCHD2,NS,carcinoma,0,1	PTCHD2	NM_020780	exon21	c.C4034T	p.A1345V	TCATGGCGCCCAG	.	19	2	22	0	0.001	0	T	11596598	C	T	11596598	3	4	30	1	0	0	0	0	1	0	0	0	12782	768	27	1	4112	1	PTCHD2	1	11596598	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	3706572	11596598	237654023	3	4629											
PRAMEF14	729528	bcgsc.ca	37	chr1	13669138	13669138	+	Silent	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagcccactggtgtggcacaAcaggtccttcagggcaccca	9	6	11	15	0	1	0	1	0	0	0	2	0	2	0	3	4	2	2	3	4	1	1	rs55990133	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PRAMEF14	NM_001099854	exon4	c.T1048C	p.L350L	GGCACAACAGGTC	.	13	4	70	3	A|0.500;G|0.500	9	G	13669138	G	G	13669138	2	3	30	1	0	0	0	0	0	0	0	1	12478	40	2	4		4	PRAMEF14	1	13669138	Silent	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	2072540	13669138	235581483	4	4630											
MACF1	23499	hgsc.bcm.edu	37	chr1	39903515	39903515	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cctctcgcctgcgtatgccaCcactgatccctgctgaagta	7	10	8	16	2	1	2	0	2	1	0	3	2	2	2	5	0	3	3	5	0	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_012090	exon68	c.C11878T	p.P3960S	ATGCCACCACTGA	.	59	4	42	0	.	.	T	39903515	C	T	39903515	3	4	30	1	0	0	0	0	1	0	0	0	9190	507	18	3	18295	3	MACF1	1	39903515	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	26234377	39903515	209347106	5	4631											
ST3GAL3	6487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44290442	44290442	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acggtggtttttggccttgaCtgcatattggaatcacctgg	7	14	12	8	1	1	1	1	1	0	0	1	2	1	2	2	5	1	2	2	5	2	5	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_174963	exon5	c.C294T	p.D98D	CCTTGACTGCATA	.	99	18	83	0	.	.	T	44290442	C	T	44290442	2	4	30	1	0	0	0	0	0	0	0	1	15272	564	20	3		3	ST3GAL3	1	44290442	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	4386927	44290442	204960179	6	4632											
PRKAA2	5563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	57140104	57140107	+	Frame_Shift_Del	DEL	AGAC	AGAC	-																															tggcagttaaaatcttaaatAgacagaagattcgcagttta																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	AGAC	AGAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006252	exon2	c.144_147del	p.48_49del	TTAAATAGACAGA	.	273	40	173	0	.	.	-	57140107	AGAC	-	57140104	7	5	30	1	0	1	0	1	0	0	0	0	12546	412	15	0	151	0	PRKAA2	1	57140104	Frame_Shift_Del	DEL	AGAC	TCGA-ZH-A8Y2-01A-11D-A417-09	12849662	57140104	192110517	7	4633											
IL12RB2	3595	hgsc.bcm.edu	37	chr1	67787288	67787288	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tctgtatcttattgcagatgCgtgcaagagaggcgatgtga	10	12	13	6	2	2	3	0	1	2	2	2	5	2	3	0	1	3	3	0	1	3	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IL12RB2,NS,carcinoma,0,1	IL12RB2	NM_001559	exon3	c.C80A	p.A27E	CAGATGCGTGCAA	.	67	3	40	0	.	0	A	67787288	C	A	67787288	3	1	30	1	0	0	0	0	1	0	0	0	7671	768	27	2	86	2	IL12RB2	1	67787288	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	10647184	67787288	181463333	8	4634											
SH3GLB1	51100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	87200770	87200770	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tttccttcacaggcccatcaCcttcgctgtctgaatgactt	7	14	6	14	1	3	2	2	2	1	0	5	2	4	2	3	1	0	1	3	1	1	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001206651	exon8	c.C756G	p.H252Q	CCATCACCTTCGC	.	89	15	72	0	.	.	G	87200770	C	G	87200770	3	3	30	1	0	0	0	0	1	0	0	0	14308	506	18	5	695	5	SH3GLB1	1	87200770	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	19413482	87200770	162049851	9	4635											
POLR3C	10623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145601830	145601830	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgtcaaggttggcctgccaaTaaatcccatcatctggaatg	11	11	9	10	0	3	0	2	0	1	0	4	1	4	1	3	3	1	1	3	3	5	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006468	exon6	c.A701G	p.Y234C	TGCCAATAAATCC	.	51	22	41	0	.	.	C	145601830	T	C	145601830	3	2	30	1	0	0	0	0	1	0	0	0	12278	1406	49	4	943	4	POLR3C	1	145601830	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	58401060	145601830	103648791	10	4636											
TCHH	7062	hgsc.bcm.edu	37	chr1	152082449	152082449	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcagctcctcttcctTccgatattgcctctccagct	4	14	6	17	1	2	0	0	0	2	0	6	1	5	0	5	0	5	4	5	0	1	4	rs199978971		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TCHH,NS,carcinoma,0,1	TCHH	NM_007113	exon3	c.A3244G	p.K1082E	CTTCCTTCCGATA	.	67	3	35	1	.	0	C	152082449	T	C	152082449	3	2	30	1	0	0	0	0	1	0	0	0	15760	1792	62	4	2591	4	TCHH	1	152082449	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	6480619	152082449	97168172	11	4637											
FLG	2312	hgsc.bcm.edu	37	chr1	152279697	152279698	+	Missense_Mutation	DNP	CT	CT	TG																															ttcctgcttgtcctgggcccCtctgattgtccctggcccac																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FLG,caecum,carcinoma,0,1	FLG	NM_002016	exon3	c.A7664C	p.E2555A	GGCCCCTCTGATT	.	104	6	71	1	.	0	TG	152279698	CT	TG	152279697	3	4	30	1	0	0	0	0	1	0	0	0	5955	680	24	3	4524	3	FLG	1	152279697	Missense_Mutation	DNP	CT	TCGA-ZH-A8Y2-01A-11D-A417-09	197248	152279697	96970924	12	4638											
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156713449	156713449	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggggctcactcacctctcAtgatctctgatgcctggggc	6	10	12	13	0	4	2	3	2	2	0	6	2	4	2	2	4	1	1	2	4	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001126050	exon5	c.T759A	p.H253Q	CCTCTCATGATCT	.	50	10	37	0	.	.	T	156713449	A	T	156713449	3	4	30	1	0	0	0	0	1	0	0	0	7059	214	8	5	19	5	HDGF	1	156713449	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	4433752	156713449	92537172	13	4639											
C1orf112	55732	hgsc.bcm.edu;bcgsc.ca	37	chr1	169796306	169796306	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agtcagctgctcacatttcaGcctttcatgcaggtggtttt	7	15	9	10	0	4	0	4	0	0	0	4	0	4	0	1	2	4	4	1	2	0	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018186	exon11	c.G963A	p.Q321Q	ATTTCAGCCTTTC	.	86	4	65	0	.	.	A	169796306	G	A	169796306	2	1	30	1	0	0	0	0	0	0	0	1	1998	962	34	3		3	C1orf112	1	169796306	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	13082857	169796306	79454315	14	4640											
FAM71A	149647	hgsc.bcm.edu	37	chr1	212798528	212798528	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtatgctggacatggccaGgccaccaagagaaaaaaacg	16	4	12	9	1	0	1	0	0	0	1	0	4	0	2	3	3	2	2	3	3	5	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FAM71A,NS,carcinoma,0,1	FAM71A	NM_153606	exon1	c.G309T	p.Q103H	TGGCCAGGCCACC	.	54	3	28	0	.	0	T	212798528	G	T	212798528	3	4	30	1	0	0	0	0	1	0	0	0	5642	991	35	3	311	3	FAM71A	1	212798528	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	43002222	212798528	36452093	15	4641											
FMN2	56776	broad.mit.edu	37	chr1	240341360	240341360	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggaacacaggctcgaggatgCtgaaacaggtaaccctttcc	12	7	11	11	1	0	1	0	1	0	0	2	4	1	3	2	4	4	3	2	4	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	FMN2	NM_020066	exon3	c.C1922T	p.A641V	AGGATGCTGAAAC	.	67	3	50	0	.	451	T	240341360	C	T	240341360	3	4	30	1	0	0	0	0	1	0	0	0	5983	797	28	3	1932	3	FMN2	1	240341360	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	27542832	240341360	8909261	16	4642											
OR2G3	81469	hgsc.bcm.edu	37	chr1	247769640	247769640	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttacagtggtgattatattCtatggcaccataatctacgt	11	15	7	8	1	2	1	0	1	2	0	2	1	2	1	1	2	2	1	1	2	6	7	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	OR2G3,NS,carcinoma,0,1	OR2G3	NM_001001914	exon1	c.C753A	p.F251L	TATATTCTATGGC	.	45	2	27	0	.	0	A	247769640	C	A	247769640	3	1	30	1	0	0	0	0	1	0	0	0	11047	912	32	3	755	3	OR2G3	1	247769640	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	7428280	247769640	1480981	17	4643											
MYT1L	23040	hgsc.bcm.edu;bcgsc.ca	37	chr2	1926757	1926757	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taatagtttaagggagtccaCtgtttctctaacaacatcac	13	13	6	9	0	2	0	1	0	1	0	4	1	3	1	1	1	2	2	1	1	5	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015025	exon10	c.G784A	p.V262M	AGTCCACTGTTTC	.	86	4	81	0	.	.	T	1926757	C	T	1926757	3	4	30	1	0	0	0	0	1	0	0	0	10155	565	20	3	2834	3	MYT1L	2	1926757	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		1926757	241272616	18	4644											
SMC6	79677	hgsc.bcm.edu	37	chr2	17906563	17906563	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgctcctttgttctttctttCgtttccataatgtatgaata	7	21	5	8	1	2	1	0	1	2	0	5	1	4	1	2	0	1	4	2	0	4	8	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.,1	.	NM_001142286	exon9	c.G687A	p.T229T	TTCTTTCGTTTCC	.	60	3	35	0	.	102	T	17906563	C	T	17906563	2	4	30	1	0	0	0	0	0	0	0	1	14841	871	31	1		1	SMC6	2	17906563	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	15979806	17906563	225292810	19	4645											
PPM1G	5496	hgsc.bcm.edu	37	chr2	27605369	27605369	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatcacaggcaatgaccatGaattcatggtcgtcagtgag	12	9	10	10	1	3	3	3	3	0	0	4	3	3	3	2	2	0	1	2	2	2	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PPM1G,NS,carcinoma,0,1	PPM1G	NM_177983	exon8	c.C1305A	p.F435L	GACCATGAATTCA	.	31	2	35	0	.	0	T	27605369	G	T	27605369	3	4	30	1	0	0	0	0	1	0	0	0	12389	1281	45	3	347	3	PPM1G	2	27605369	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	9698806	27605369	215594004	20	4646											
SUPT7L	9913	hgsc.bcm.edu	37	chr2	27878431	27878431	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggccttctcaggattGacaatcctttcatattcttc	7	17	6	11	0	4	1	2	1	3	0	7	2	5	2	2	2	0	0	2	2	2	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SUPT7L,NS,carcinoma,0,1	SUPT7L	NM_014860	exon5	c.C783A	p.V261V	AGGATTGACAATC	.	25	2	31	0	.	0	T	27878431	G	T	27878431	2	4	30	1	0	0	0	0	0	0	0	1	15457	1277	45	3		3	SUPT7L	2	27878431	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	273062	27878431	215320942	21	4647											
EML4	27436	hgsc.bcm.edu	37	chr2	42483696	42483696	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtataaccaatggaagtggTgcaaacagaaaaccaagtca	18	7	9	7	0	1	1	1	0	0	1	1	2	1	2	2	2	4	2	2	2	8	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001145076	exon3	c.T264C	p.G88G	AAGTGGTGCAAAC	.	110	5	93	0	.	.	C	42483696	T	C	42483696	2	2	30	1	0	0	0	0	0	0	0	1	5127	1683	59	4		4	EML4	2	42483696	Silent	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	14605265	42483696	200715677	22	4648											
GTDC1	79712	hgsc.bcm.edu	37	chr2	144728223	144728223	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	aaattcaacagaggtacctgGgacatctgtgaaggtttctc	12	11	10	8	0	3	2	1	1	2	1	4	3	3	3	1	3	2	2	1	3	4	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001006636	exon8	c.C982A	p.P328T	TACCTGGGACATC	.	88	4	87	0	.	.	T	144728223	G	T	144728223	3	4	30	1	0	0	0	0	1	0	0	0	6892	1232	43	3	414	3	GTDC1	2	144728223	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	102244527	144728223	98471150	23	4649											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152384096	152384096	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	ttcgtactgtttcttatagtCcagctgtttttaacaggaga	9	17	8	7	1	1	1	0	0	1	1	3	2	2	1	1	1	3	4	1	1	4	8	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001271208	exon148	c.G21844C	p.D7282H	TATAGTCCAGCTG	.	38	8	51	0	.	.	G	152384096	C	G	152384096	3	3	30	1	0	0	0	0	1	0	0	0	10349	855	30	5	3982	5	NEB	2	152384096	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	7655873	152384096	90815277	24	4650											
KIAA1715	80856	broad.mit.edu	37	chr2	176794915	176794915	+	Missense_Mutation	SNP	T	T	C																															tattatcatcaagaacatcgTgttctaaagattctgaaaag																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	KIAA1715	NM_030650	exon13	c.A1067G	p.H356R	ACATCGTGTTCTA	.	36	4	43	0	.	61	C	176794915	T	C	176794915	3	2	30	1	0	0	0	0	1	0	0	0	8296	1696	59	4	223	4	KIAA1715	2	176794915	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	24410819	176794915	66404458	25	4651	43	2									
KIAA1715	80856	broad.mit.edu	37	chr2	176794918	176794918	+	Missense_Mutation	SNP	T	T	C																															tatcatcaagaacatcgtgtTctaaagattctgaaaagata																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	KIAA1715	NM_030650	exon13	c.A1064G	p.E355G	TCGTGTTCTAAAG	.	35	4	40	0	.	61	C	176794918	T	C	176794918	3	2	30	1	0	0	0	0	1	0	0	0	8296	1783	62	4	226	4	KIAA1715	2	176794918	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	3	176794918	66404455	26	4652	43	2									
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178098799	178098799	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gctggctgaattgggagaaaTtcacctgtctcttcatctag	9	13	10	9	0	4	2	2	1	2	1	5	3	4	2	1	2	0	2	1	2	3	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	NFE2L2,NS,carcinoma,0,9	NFE2L2	NM_006164	exon2	c.A246T	p.E82D	GAGAAATTCACCT	.	94	45	68	0	.	0	A	178098799	T	A	178098799	3	1	30	1	0	0	0	0	1	0	0	0	10415	1490	52	5	1587	5	NFE2L2	2	178098799	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	1303881	178098799	65100574	27	4653											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179437209	179437209	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcaacaatatagttcttgatTtttgaacctccatcaaggag	13	14	6	8	0	3	2	2	2	1	0	4	3	4	3	2	1	2	1	2	1	6	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001267550	exon326	c.A73650T	p.K24550N	CTTGATTTTTGAA	.	44	10	35	0	.	.	A	179437209	T	A	179437209	3	1	30	1	0	0	0	0	1	0	0	0	16797	1838	64	5	34477	5	TTN	2	179437209	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	1338410	179437209	63762164	28	4654											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197138745	197138745	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tctggaaagggatgacatacCcactggaaccatgtcctggt	11	9	11	10	0	1	1	0	1	1	0	2	4	2	4	3	4	2	0	3	4	3	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020760	exon16	c.G3238A	p.A1080T	ACATACCCACTGG	.	40	19	45	0	.	.	T	197138745	C	T	197138745	3	4	30	1	0	0	0	0	1	0	0	0	7084	637	22	3	1536	3	HECW2	2	197138745	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	17701536	197138745	46060628	29	4655											
NEU4	129807	hgsc.bcm.edu	37	chr2	242757381	242757381	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gccctcctccctgcagactgGgccacattcgctgtgggtcc	4	9	11	17	1	0	1	0	0	0	1	4	1	3	1	5	2	1	2	5	2	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001167599	exon4	c.G501A	p.W167X	AGACTGGGCCACA	.	23	6	7	0	.	.	A	242757381	G	A	242757381	4	1	30	1	0	0	0	0	0	1	0	0	10391	1241	43	3	515	3	NEU4	2	242757381	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	45618636	242757381	441992	30	4656											
TMEM43	79188	hgsc.bcm.edu	37	chr3	14183116	14183116	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actggtttcctgttttccgaGacctggtcaacattggcctg	6	14	10	11	1	1	1	1	0	0	1	3	2	3	1	4	3	1	2	4	3	1	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_024334	exon12	c.G1024T	p.D342Y	TTCCGAGACCTGG	.	45	3	52	0	.	.	T	14183116	G	T	14183116	3	4	30	1	0	0	0	0	1	0	0	0	16227	942	33	3	1070	3	TMEM43	3	14183116	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		14183116	183839314	31	4657											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52442599	52442599	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcttcgatccatttgaacAggaagataaatccatataca	15	11	6	9	1	1	2	0	1	1	1	4	4	3	3	2	1	2	1	2	1	6	5	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004656	exon4	c.T146C	p.L49P	TTGAACAGGAAGA	.	20	16	38	0	.	.	G	52442599	A	G	52442599	3	3	30	1	0	0	0	0	1	0	0	0	1309	188	7	4	2099	4	BAP1	3	52442599	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	38259483	52442599	145579831	32	4658											
SIDT1	54847	hgsc.bcm.edu	37	chr3	113321990	113321990	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtgataaaaacatcatccGgaccaaggtacccactctgc	14	7	8	12	1	2	1	1	1	1	0	3	3	3	2	3	2	3	1	3	2	5	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SIDT1,mucosal,malignant_melanoma,0,1	SIDT1	NM_017699	exon12	c.G1256T	p.R419L	TCATCCGGACCAA	.	26	2	40	0	.	0	T	113321990	G	T	113321990	3	4	30	1	0	0	0	0	1	0	0	0	14357	1116	39	2	1302	2	SIDT1	3	113321990	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	60879391	113321990	84700440	33	4659											
SLC41A3	54946	hgsc.bcm.edu	37	chr3	125725323	125725323	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acacgattaaatgttgagtgCagatgaagggttgtatgagg	13	11	14	3	1	0	4	0	3	0	1	0	5	0	4	0	2	1	4	0	2	4	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SLC41A3_ENST00000315891,NS,carcinoma,0,1	SLC41A3_ENST00000315891	NM_001008485	exon12	c.G1451A	p.C484Y	TGAGTGCAGATGA	.	40	2	39	0	.	0	T	125725323	C	T	125725323	3	4	30	1	0	0	0	0	1	0	0	0	14686	710	25	3	76	3	SLC41A3	3	125725323	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	12403333	125725323	72297107	34	4660											
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	143567100	143567100	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aattgaagacaagcagctccAccgctccctgatgttgaaac	13	8	8	12	1	0	4	0	3	0	1	2	4	2	4	3	0	3	4	3	0	4	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_173653	exon1	c.T65C	p.V22A	AGCTCCACCGCTC	.	66	14	108	0	.	.	G	143567100	A	G	143567100	3	3	30	1	0	0	0	0	1	0	0	0	14776	159	6	4	1936	4	SLC9A9	3	143567100	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	17841777	143567100	54455330	35	4661											
LRRIQ4	344657	hgsc.bcm.edu	37	chr3	169555341	169555341	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaactactaaaaccacaaaaGaaaggaaagacctctccaaa	22	4	5	10	0	1	2	0	0	1	2	2	4	1	3	3	1	3	0	3	1	9	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	LRRIQ4,rectum,carcinoma,0,1	LRRIQ4	NM_001080460	exon5	c.G1605T	p.K535N	ACAAAAGAAAGGA	.	47	3	85	0	.	0	T	169555341	G	T	169555341	3	4	30	1	0	0	0	0	1	0	0	0	9076	933	33	3	1623	3	LRRIQ4	3	169555341	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	25988241	169555341	28467089	36	4662											
SOX2	6657	broad.mit.edu;bcgsc.ca	37	chr3	181430207	181430226	+	Frame_Shift_Del	DEL	GCGGCGGCGGCAACTCCACC	GCGGCGGCGGCAACTCCACC	-																															cccgcagcaaacttcgggggGcggcggcggcaactccaccg																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SOX2	NM_003106	exon1	c.59_78del	p.20_26del	CGGGGGGCGGCGG	.	12	8	25	0	.	28	-	181430226	GCGGCGGCGGCAACTCCACC	-	181430207	7	5	30	1	0	1	0	1	0	0	0	0	15003	1203	42	0	61	0	SOX2	3	181430207	Frame_Shift_Del	DEL	GCGGCGGCGGCAACTCCACC	TCGA-ZH-A8Y2-01A-11D-A417-09	11874866	181430207	16592223	37	4663											
MUC4	4585	bcgsc.ca	37	chr3	195509127	195509127	+	Silent	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gtggatgctgaggaagggctAgtgacaggaagaggcgtggt	10	7	20	4	1	0	3	0	2	0	1	0	6	0	6	0	6	1	2	0	6	3	1	rs200879287		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.T9324C	p.T3108T	AGGGCTAGTGACA	.	67	24	84	16	A|0.998;G|0.002	1505	G	195509127	G	G	195509127	2	3	30	1	0	0	0	0	0	0	0	1	10026	407	15	4		4	MUC4	3	195509127	Silent	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	14078920	195509127	2513303	38	4664											
WHSC1	7468	hgsc.bcm.edu;bcgsc.ca	37	chr4	1918727	1918727	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaattatgccaggaaaGtgccaagcaggcacccacga	16	5	10	10	1	0	1	0	1	0	0	0	3	0	2	3	2	3	2	3	2	5	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_133335	exon4	c.G890T	p.S297I	AGGAAAGTGCCAA	.	74	4	98	0	.	.	T	1918727	G	T	1918727	3	4	30	1	0	0	0	0	1	0	0	0	17422	1029	36	3	900	3	WHSC1	4	1918727	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		1918727	189235549	39	4665											
DSPP	1834	hgsc.bcm.edu	37	chr4	88537123	88537123	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcgatagcagcgacagcagCgacagcagcgatagcagtga	14	3	14	10	4	0	1	0	1	0	0	0	5	0	1	0	0	8	4	0	0	2	2	rs372453629		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	DSPP,NS,carcinoma,0,2	DSPP	NM_014208	exon5	c.C3309T	p.S1103S	CAGCAGCGACAGC	.	2	2	7	2	.	0	T	88537123	C	T	88537123	2	4	30	1	0	0	0	0	0	0	0	1	4808	767	27	1		1	DSPP	4	88537123	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	86618396	88537123	102617153	40	4666											
BBS12	166379	bcgsc.ca	37	chr4	123663872	123663872	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtagagttggcagtaggcttGagtcatggagatcacagcag	11	9	15	6	0	2	3	2	1	0	2	2	4	2	3	0	3	1	6	0	3	2	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	BBS12	NM_001178007	exon3	c.G825T	p.L275F	AGGCTTGAGTCAT	.	22	3	30	0	.	63	T	123663872	T	T	123663872	3	4	30	1	0	0	0	0	1	0	0	0	1335	1281	45	3	827	3	BBS12	4	123663872	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	35126749	123663872	67490404	41	4667											
SPRY1	10252	bcgsc.ca	37	chr4	124322966	124322966	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccaagacaagaaaagCatgaaaggactcatgaaatc	20	4	8	9	0	1	4	1	2	0	2	2	5	1	5	1	1	2	2	1	1	6	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SPRY1	NM_001258039	exon2	c.C220A	p.H74N	GAAAAGCATGAAA	.	18	3	32	0	.	28	A	124322966	A	A	124322966	3	1	30	1	0	0	0	0	1	0	0	0	15161	710	25	3	222	3	SPRY1	4	124322966	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	659094	124322966	66831310	42	4668											
HSPA4L	22824	hgsc.bcm.edu	37	chr4	128743939	128743939	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aataggggaagatgatcatgCaagataagttagagaaagaa	20	7	12	2	0	1	5	1	1	0	4	1	7	1	6	0	2	1	2	0	2	8	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	HSPA4L,colon,carcinoma,0,1	HSPA4L	NM_014278	exon15	c.C1828T	p.Q610X	ATCATGCAAGATA	.	41	2	76	0	.	0	T	128743939	C	T	128743939	4	4	30	1	0	0	0	0	0	1	0	0	7456	711	25	3	1886	3	HSPA4L	4	128743939	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	4420973	128743939	62410337	43	4669											
SETD7	80854	bcgsc.ca	37	chr4	140454482	140454482	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cgtaagtgtaaactccctggCcctgcaaggcatcatccaca	11	8	8	14	1	1	0	1	0	0	0	3	0	3	0	3	2	2	4	3	2	4	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SETD7,colon,carcinoma,0,1	SETD7	NM_030648	exon3	c.G209A	p.G70D	CCCTGGCCCTGCA	.	63	4	74	0	.	35	T	140454482	T	T	140454482	3	4	30	1	0	0	0	0	1	0	0	0	14190	739	26	3	915	3	SETD7	4	140454482	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	11710543	140454482	50699794	44	4670											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	488540	488540	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cggccaccgggtccacagccGccatgaggctgccaaacagg	9	3	13	16	3	0	1	0	1	0	0	1	1	1	1	6	4	3	1	6	4	1	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004174	exon3	c.C566A	p.A189E	ACAGCCGCCATGA	.	169	39	74	0	.	.	T	488540	G	T	488540	3	4	30	1	0	0	0	0	1	0	0	0	14768	1087	38	2	1998	2	SLC9A3	5	488540	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		488540	180426720	45	4671											
EGFLAM	133584	hgsc.bcm.edu	37	chr5	38407067	38407067	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgtgaccacggtggcTccccagcccattcccataca	7	8	7	19	1	0	1	0	1	0	0	3	1	3	1	6	2	2	1	6	2	1	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001205301	exon8	c.T966C	p.A322A	GGTGGCTCCCCAG	.	80	4	30	0	.	.	C	38407067	T	C	38407067	2	2	30	1	0	0	0	0	0	0	0	1	4992	1538	54	4		4	EGFLAM	5	38407067	Silent	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	37918527	38407067	142508193	46	4672											
HCN1	348980	hgsc.bcm.edu	37	chr5	45267285	45267286	+	Frame_Shift_Ins	INS	-	-	G																															tgaaattgtccacggaaagtINSgagtaaagacgacaatatgt																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_021072	exon7	c.1689_1690insC	p.S563fs	GGAAAGTGAGTAA	.	181	119	97	0	.	.	G	45267286	-	G	45267285	7	5	30	1	0	1	1	0	0	0	0	0	7037	1683	59	0	991	0	HCN1	5	45267285	Frame_Shift_Ins	INS	-	TCGA-ZH-A8Y2-01A-11D-A417-09	6860218	45267285	135647975	47	4673											
F2RL1	2150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	76128777	76128777	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgtgatttacatggcCaatctggccttggctgacct	6	13	10	12	0	1	2	0	2	1	0	1	2	1	2	4	3	2	2	4	3	2	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	F2RL1,NS,carcinoma,0,1	F2RL1	NM_005242	exon2	c.C345T	p.A115A	CATGGCCAATCTG	.	27	9	35	0	.	0	T	76128777	C	T	76128777	2	4	30	1	0	0	0	0	0	0	0	1	5372	581	21	3		3	F2RL1	5	76128777	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	30861492	76128777	104786483	48	4674											
BHMT2	23743	hgsc.bcm.edu	37	chr5	78376673	78376673	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	acagctagaagtttttgcctGgaaaaatgtggacttcttga	12	13	10	6	0	1	2	0	1	1	1	1	4	1	4	1	2	2	2	1	2	4	5	rs373649954	alternate_allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	BHMT2,NS,NS,0,1	BHMT2	NM_017614	exon4	c.G422T	p.W141L	TTGCCTGGAAAAA	.	48	2	60	0	.	0	T	78376673	G	T	78376673	3	4	30	1	0	0	0	0	1	0	0	0	1425	1357	47	3	436	3	BHMT2	5	78376673	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	2247896	78376673	102538587	49	4675											
ATG10	83734	bcgsc.ca	37	chr5	81549163	81549163	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tatatcacatcatggctgagCattgtagggccagttgttgg	9	13	12	7	0	2	1	2	1	0	0	2	1	2	1	1	3	1	5	1	3	3	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ATG10	NM_001131028	exon8	c.C582A	p.S194R	GCTGAGCATTGTA	.	52	4	83	0	.	23	A	81549163	A	A	81549163	3	1	30	1	0	0	0	0	1	0	0	0	1088	709	25	3	604	3	ATG10	5	81549163	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	3172490	81549163	99366097	50	4676											
GPR98	84059	bcgsc.ca	37	chr5	89969943	89969943	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tccgtgtgacattggtttctGcaattcctggagatgggaag	8	13	13	7	1	1	2	0	1	1	1	3	4	3	3	2	3	1	2	2	3	2	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	GPR98	NM_032119	exon23	c.G5002T	p.A1668S	GTTTCTGCAATTC	.	32	3	74	0	.	605	T	89969943	T	T	89969943	3	4	30	1	0	0	0	0	1	0	0	0	6762	1319	46	3	5092	3	GPR98	5	89969943	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	8420780	89969943	90945317	51	4677											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	176002399	176002399	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtcagggagttttactCggcctctgtggctgaggatg	5	14	15	7	1	2	1	1	1	1	0	3	3	2	3	1	4	1	3	1	4	1	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017675	exon9	c.C740A	p.S247X	TTTACTCGGCCTC	.	33	14	16	0	.	.	A	176002399	C	A	176002399	4	1	30	1	0	0	0	0	0	1	0	0	3141	893	31	2	770	2	CDHR2	5	176002399	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	86032456	176002399	4912861	52	4678											
FAM50B	26240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3850817	3850817	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acgacttcatcatcgccaggGcgaggggcaagagcgggccg	9	4	16	12	5	2	1	2	0	0	1	3	3	2	1	2	4	1	1	2	4	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_012135	exon2	c.G772A	p.A258T	GCCAGGGCGAGGG	.	30	8	31	0	.	.	A	3850817	G	A	3850817	3	1	30	1	0	0	0	0	1	0	0	0	5614	1203	42	3	774	3	FAM50B	6	3850817	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		3850817	167264250	53	4679											
EEF1E1	9521	hgsc.bcm.edu;bcgsc.ca	37	chr6	8097530	8097530	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggatgtcatttttactGgagtgcccatctacttgagt	7	16	11	7	0	2	1	1	1	1	0	2	3	2	3	1	2	3	0	1	2	2	5	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135650	exon2	c.C258A	p.S86S	TTTACTGGAGTGC	.	82	4	66	0	.	.	T	8097530	G	T	8097530	2	4	30	1	0	0	0	0	0	0	0	1	4953	1335	47	3		3	EEF1E1	6	8097530	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	4246713	8097530	163017537	54	4680											
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30303613	30303613	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gcagcaggtgttgctttcacGactggaagaagaggaacagg	12	7	15	7	1	1	2	1	0	0	2	1	5	1	4	0	4	3	4	0	4	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_172016	exon5	c.G641A	p.R214Q	TTTCACGACTGGA	.	32	14	26	0	.	.	A	30303613	G	A	30303613	3	1	30	1	0	0	0	0	1	0	0	0	16574	1058	37	1	651	1	TRIM39	6	30303613	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	22206083	30303613	140811454	55	4681											
HLA-B	3106	hgsc.bcm.edu	37	chr6	31324018	31324018	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgcactcgccctccaggtagGctctccgctgctccgcctca	4	8	9	20	4	2	0	1	0	1	0	6	0	4	0	5	2	1	5	5	2	1	1	rs41542712	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_005514	exon3	c.C545T	p.A182V	AGGTAGGCTCTCC	.	57	7	29	0	0.001	.	A	31324018	G	A	31324018	3	1	30	1	0	0	0	0	1	0	0	0	7237	1203	42	3	563	3	HLA-B	6	31324018	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	1020405	31324018	139791049	56	4682											
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32918505	32918505	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cctcagagagtcccacactgGgactcccatcctggcagtac	9	7	9	16	0	1	1	1	0	0	1	4	3	4	2	4	2	1	2	4	2	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006120	exon2	c.C164A	p.P55H	ACACTGGGACTCC	.	25	11	20	0	.	.	T	32918505	G	T	32918505	3	4	30	1	0	0	0	0	1	0	0	0	7239	1232	43	3	637	3	HLA-DMA	6	32918505	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	1594487	32918505	138196562	57	4683											
KCNK17	89822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39278778	39278778	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ccgtttttgtatgcttggacGacatcctggggaagaggctg	7	12	14	8	2	0	1	0	0	0	1	1	4	1	3	2	4	1	4	2	4	2	4	rs368724952		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135111	exon2	c.C243T	p.V81V	TTGGACGACATCC	.	30	4	27	0	.	.	A	39278778	G	A	39278778	2	1	30	1	0	0	0	0	0	0	0	1	8108	1045	37	1		1	KCNK17	6	39278778	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	6360273	39278778	131836289	58	4684											
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56918360	56918360	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttgtggctttaaaagaattgGtgtcaactatagcagagtgt	12	14	11	4	0	1	2	1	0	0	2	1	2	1	2	0	2	2	2	0	2	6	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020931	exon4	c.G1063C	p.V355L	GAATTGGTGTCAA	.	65	27	73	0	.	.	C	56918360	G	C	56918360	3	2	30	1	0	0	0	0	1	0	0	0	8287	1261	44	5	1077	5	KIAA1586	6	56918360	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	17639582	56918360	114196707	59	4685											
BAI3	577	hgsc.bcm.edu	37	chr6	69665993	69665993	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atgggactcagcagagaagcCggcagtgcactgcagctgcc	10	5	14	12	1	1	1	1	0	0	1	1	3	1	2	2	2	6	5	2	2	1	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	BAI3,colon,carcinoma,0,1	BAI3	NM_001704	exon7	c.C1273T	p.R425W	AGAAGCCGGCAGT	.	11	2	40	0	.	0	T	69665993	C	T	69665993	3	4	30	1	0	0	0	0	1	0	0	0	1298	643	23	1	1291	1	BAI3	6	69665993	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	12747633	69665993	101449074	60	4686											
TULP4	56995	hgsc.bcm.edu	37	chr6	158924680	158924680	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaagcccagtcccccagCggacagaaaaatttggaaag	15	4	10	12	2	0	1	0	0	0	1	1	4	1	3	4	2	2	0	4	2	4	1	rs200432004		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TULP4,NS,malignant_melanoma,0,1	TULP4	NM_020245	exon13	c.C3985T	p.R1329W	CCCCAGCGGACAG	.	69	3	61	0	.	0	T	158924680	C	T	158924680	3	4	30	1	0	0	0	0	1	0	0	0	16838	759	27	1	4035	1	TULP4	6	158924680	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	89258687	158924680	12190387	61	4687											
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	166580132	166580132	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tgactttgctgaaggagacgGgagccttcatccagtgggcc	8	9	14	10	1	1	3	1	2	0	1	2	5	2	4	3	3	2	1	3	3	1	2	rs368969464		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003181	exon3	c.C419T	p.P140L	GAGACGGGAGCCT	.	27	7	27	0	.	.	A	166580132	G	A	166580132	3	1	30	1	0	0	0	0	1	0	0	0	15545	1232	43	3	916	3	T	6	166580132	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	7655452	166580132	4534935	62	4688											
RSPH10B	222967	broad.mit.edu;bcgsc.ca	37	chr7	6006556	6006556	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggcatcttcgttctgctgAacgttttggcggtctttttt	3	19	11	8	3	3	1	0	1	3	0	4	1	3	1	0	3	2	4	0	3	1	7	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	RSPH10B,NS,carcinoma,-2,1	RSPH10B	NM_173565	exon3	c.T192C	p.V64V	CTGCTGAACGTTT	.	111	15	103	0	.	28	G	6006556	A	G	6006556	2	3	30	1	0	0	0	0	0	0	0	1	13755	233	9	4		4	RSPH10B	7	6006556	Silent	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09		6006556	153132107	63	4689											
AIMP2	7965	hgsc.bcm.edu;bcgsc.ca	37	chr7	6062935	6062935	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgttttttcttttcagtGccgaagacgcagatgaaatt	9	15	10	7	3	2	3	1	1	1	2	2	4	2	3	1	0	1	2	1	0	2	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006303	exon4	c.G576T	p.V192V	TTCAGTGCCGAAG	.	62	4	42	0	.	.	T	6062935	G	T	6062935	2	4	30	1	0	0	0	0	0	0	0	1	431	1333	46	3		3	AIMP2	7	6062935	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	56379	6062935	153075728	64	4690											
ZMIZ2	83637	hgsc.bcm.edu	37	chr7	44806150	44806150	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccagcgtcccggcagtcctTgggccaagcgagcttaggac	7	6	13	15	3	0	0	0	0	0	0	2	2	2	1	4	3	3	2	4	3	2	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_031449	exon18	c.T2543C	p.L848S	AGTCCTTGGGCCA	.	91	3	60	0	.	.	C	44806150	T	C	44806150	3	2	30	1	0	0	0	0	1	0	0	0	17755	1821	63	4	2609	4	ZMIZ2	7	44806150	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	38743215	44806150	114332513	65	4691											
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	137150763	137150763	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcttgggaaatctccaTcacaaagtgcaaatgttcct	12	12	6	11	0	4	0	2	0	2	0	6	1	5	1	2	1	1	2	2	1	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004717	exon27	c.A2527G	p.M843V	TCTCCATCACAAA	.	45	17	49	0	.	.	C	137150763	T	C	137150763	3	2	30	1	0	0	0	0	1	0	0	0	4499	1435	50	4	702	4	DGKI	7	137150763	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	92344613	137150763	21987900	66	4692											
MGAM	8972	hgsc.bcm.edu	37	chr7	141794453	141794453	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	cagcctcttcggcatatcctAtgtgagtgtccttgggatcc	6	13	10	12	1	1	1	0	1	1	0	5	2	4	2	4	2	1	1	4	2	2	4	rs202001107		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MGAM_ENST00000549489,NS,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon39	c.A4652T	p.Y1551F	TATCCTATGTGAG	.	60	3	41	2	.	0	T	141794453	A	T	141794453	3	4	30	1	0	0	0	0	1	0	0	0	9591	463	16	5	4802	5	MGAM	7	141794453	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	4643690	141794453	17344210	67	4693											
MLL3	58508	hgsc.bcm.edu	37	chr7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caatacctatcacattgtctAcattgcagaataagatcttc	14	13	4	10	0	3	2	1	0	2	2	4	2	3	2	1	0	3	1	1	0	6	7	rs4024337		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	98	5	89	1	.	0	T	151921114	A	T	151921114	4	4	30	1	0	0	0	0	0	1	0	0	9670	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	10126661	151921114	7217549	68	4694											
EPPK1	83481	hgsc.bcm.edu	37	chr8	144940742	144940742	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggcgggcaccaggacgcccGcgatgcagctggtgccctcc	5	5	15	16	4	0	0	0	0	0	0	1	2	1	1	4	4	3	3	4	4	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_031308	exon1	c.C6680T	p.A2227V	ACGCCCGCGATGC	.	70	5	43	0	.	.	A	144940742	G	A	144940742	3	1	30	1	0	0	0	0	1	0	0	0	5218	1087	38	1	586	1	EPPK1	8	144940742	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		144940742	1423280	69	4695											
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	145739898	145739898	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccgccttgagacacggtggCaggccagacacctgcaaatg	10	5	13	13	2	0	2	0	1	0	2	0	3	0	2	4	3	1	2	4	3	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004260	exon10	c.G1632A	p.L544L	CGGTGGCAGGCCA	.	31	16	27	0	.	.	T	145739898	C	T	145739898	2	4	30	1	0	0	0	0	0	0	0	1	13254	697	25	3		3	RECQL4	8	145739898	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	799156	145739898	624124	70	4696											
SECISBP2	79048	bcgsc.ca	37	chr9	91943787	91943787	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagaagtagtaaaaccagctGcagtgttatcaaaggtgagg	15	8	13	5	0	1	2	1	1	0	1	1	3	1	2	1	2	3	5	1	2	6	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SECISBP2	NM_024077	exon5	c.G787T	p.A263S	CCAGCTGCAGTGT	.	19	3	42	0	.	64	T	91943787	T	T	91943787	3	4	30	1	0	0	0	0	1	0	0	0	14060	1319	46	3	805	3	SECISBP2	9	91943787	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		91943787	49269644	71	4697											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114192870	114192870	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaggtacaccttgtacAtcttattaatgatggcagga	12	12	8	9	0	1	1	0	1	1	0	2	2	2	2	2	3	2	3	2	3	5	5	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001080398	exon10	c.T1421C	p.M474T	TTGTACATCTTAT	.	22	8	43	0	.	.	G	114192870	A	G	114192870	3	3	30	1	0	0	0	0	1	0	0	0	8213	217	8	4	4800	4	KIAA0368	9	114192870	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	22249083	114192870	27020561	72	4698											
ARHGAP21	57584	hgsc.bcm.edu;bcgsc.ca	37	chr10	24889838	24889838	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aacatacatctgtttccatgGccgaatacttccaccaactc	12	11	4	14	1	1	0	0	0	1	0	4	1	3	0	4	1	4	1	4	1	5	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020824	exon14	c.C2869T	p.P957S	TCCATGGCCGAAT	.	81	4	84	0	.	.	A	24889838	G	A	24889838	3	1	30	1	0	0	0	0	1	0	0	0	868	1203	42	3	3059	3	ARHGAP21	10	24889838	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		24889838	110644909	73	4699											
C10orf128	170371	broad.mit.edu	37	chr10	50396360	50396360	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caggaggaagaggatcctcaGcatgctgacccccaagttca	12	6	11	12	0	2	2	2	1	0	1	3	5	3	5	3	3	2	3	3	3	2	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	C10orf128	NM_001010863	exon1	c.C22T	p.L8L	TCCTCAGCATGCT	.	9	3	10	0	.	20	A	50396360	G	A	50396360	2	1	30	1	0	0	0	0	0	0	0	1	1596	962	34	3		3	C10orf128	10	50396360	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	25506522	50396360	85138387	74	4700											
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71978550	71978550	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	gcattagaccagcgtggtacTtcaactaccatgtgaaacac	13	9	8	11	1	1	2	1	1	0	1	1	2	1	2	2	1	5	2	2	1	5	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_021129	exon3	c.A147G	p.E49E	TGGTACTTCAACT	.	38	6	43	0	.	.	C	71978550	T	C	71978550	2	2	30	1	0	0	0	0	0	0	0	1	12331	1606	56	4		4	PPA1	10	71978550	Silent	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	21582190	71978550	63556197	75	4701											
SNCG	6623	hgsc.bcm.edu;bcgsc.ca	37	chr10	88718478	88718478	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatgtcttcaagaagggcttCtccatcgccaaggagggcgt	9	9	13	10	2	3	1	1	0	2	1	5	3	3	2	2	3	0	1	2	3	3	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003087	exon1	c.C24A	p.F8L	GGGCTTCTCCATC	.	69	4	43	0	.	.	A	88718478	C	A	88718478	3	1	30	1	0	0	0	0	1	0	0	0	14897	912	32	3	26	3	SNCG	10	88718478	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	16739928	88718478	46816269	76	4702											
FAM35A	54537	broad.mit.edu	37	chr10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccttaaaatatcaactgataCagaatttctcagtataatta	17	14	3	7	0	2	2	2	1	1	1	3	2	2	2	1	0	2	1	1	0	9	7	rs3129516		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FAM35A,NS,carcinoma,0,3	FAM35A	NM_019054	exon3	c.C719A	p.T240K	CTGATACAGAATT	.	219	4	214	1	.	48	A	88911830	C	A	88911830	3	1	30	1	0	0	0	0	1	0	0	0	5589	478	17	3	721	3	FAM35A	10	88911830	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	193352	88911830	46622917	77	4703											
ADAM12	8038	hgsc.bcm.edu	37	chr10	127806650	127806650	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggaaacacattctttGcagcgaggtttggtgtgttg	7	14	15	5	1	1	0	0	0	1	0	1	2	1	1	0	4	3	3	0	4	1	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	ADAM12_ENST00000368679,colon,carcinoma,0,3	ADAM12_ENST00000368679	NM_021641	exon6	c.C569A	p.A190E	TTCTTTGCAGCGA	.	44	2	46	0	.	0	T	127806650	G	T	127806650	3	4	30	1	0	0	0	0	1	0	0	0	235	1319	46	3	2340	3	ADAM12	10	127806650	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	38894820	127806650	7728097	78	4704											
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	134940752	134940752	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggttttacctcgtcagCggaggggtcccctttatcat	6	12	12	11	2	2	0	2	0	0	0	4	1	3	1	3	5	2	2	3	5	2	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001083909	exon6	c.C417A	p.S139R	CGTCAGCGGAGGG	.	73	35	70	0	.	.	A	134940752	C	A	134940752	3	1	30	1	0	0	0	0	1	0	0	0	6677	767	27	2	435	2	GPR123	10	134940752	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	7134102	134940752	593995	79	4705											
IFITM3	10410	hgsc.bcm.edu	37	chr11	320723	320723	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttgtggggcgcccccagcaCagccacctcgtgctcctcct	4	8	11	18	2	0	0	0	0	0	0	3	0	2	0	6	2	3	3	6	2	0	1	rs56227617		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IFITM3,brain,glioma,0,1	IFITM3	NM_021034	exon1	c.G91A	p.V31M	CCAGCACAGCCAC	.	44	4	20	1	.	0	T	320723	C	T	320723	3	4	30	1	0	0	0	0	1	0	0	0	7572	478	17	3	318	3	IFITM3	11	320723	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		320723	134685793	80	4706											
OR5P2	120065	hgsc.bcm.edu	37	chr11	7818383	7818383	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	taattatgctgagattaccaGataggatgatcatgaagagg	15	11	11	4	0	1	5	1	3	0	3	1	7	1	6	1	2	2	1	1	2	5	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.,7	.	NM_153444	exon1	c.C107G	p.S36C	TTACCAGATAGGA	.	27	2	13	1	.	68	C	7818383	G	C	7818383	3	2	30	1	0	0	0	0	1	0	0	0	11225	942	33	5	865	5	OR5P2	11	7818383	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	7497660	7818383	127188133	81	4707											
SLC22A9	114571	bcgsc.ca	37	chr11	63149670	63149670	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaactggaggcagcaCaaaaaaaaaaaccttctctg	21	5	7	8	0	1	1	0	0	1	1	2	2	1	2	1	2	3	2	1	2	8	1	rs201804022		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SLC22A9	NM_080866	exon6	c.C994A	p.Q332K	GCAGCACAAAAAA	.	94	11	88	4	.	77	A	63149670	A	A	63149670	3	1	30	1	0	0	0	0	1	0	0	0	14516	479	17	3	1016	3	SLC22A9	11	63149670	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	55331287	63149670	71856846	82	4708											
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64597150	64597150	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cagcgccaacggcgcagcctCgttgagcagcgggtagagtg	8	5	16	12	5	0	2	0	1	0	1	1	2	0	2	2	2	5	4	2	2	2	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017525	exon30	c.G3760A	p.E1254K	CAGCCTCGTTGAG	.	29	5	27	0	.	.	T	64597150	C	T	64597150	3	4	30	1	0	0	0	0	1	0	0	0	3096	893	31	1	927	1	CDC42BPG	11	64597150	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	1447480	64597150	70409366	83	4709											
MAML2	84441	hgsc.bcm.edu;bcgsc.ca	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	0	18	14	9	0	0	0	0	0	0	0	0	0	0	0	0	0	9	13	0	0	0	4	rs61749250	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	39	4	51	0	.	0	T	95825254	C	T	95825254	2	4	30	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825254	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	31228104	95825254	39181262	84	4710											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108121693	108121693	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtataagttctgagcaaataCaagctgaaaactttggctta	15	12	8	6	0	1	2	0	2	1	0	1	2	1	2	0	1	4	5	0	1	8	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_000051	exon10	c.C1501A	p.Q501K	CAAATACAAGCTG	.	56	37	100	0	.	.	A	108121693	C	A	108121693	3	1	30	1	0	0	0	0	1	0	0	0	1108	479	17	3	1535	3	ATM	11	108121693	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	12296439	108121693	26884823	85	4711											
KLRF1	51348	hgsc.bcm.edu	37	chr12	9985911	9985911	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tattcaagtttctcagggagTattgctaaaatgccaaaaag	15	12	8	6	0	2	0	2	0	1	0	3	1	2	1	1	1	2	3	1	1	7	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_016523	exon3	c.T197C	p.V66A	AGGGAGTATTGCT	.	83	4	78	0	.	.	C	9985911	T	C	9985911	3	2	30	1	0	0	0	0	1	0	0	0	8463	1638	57	4	207	4	KLRF1	12	9985911	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09		9985911	123865984	86	4712											
SMARCD1	6602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	50482343	50482359	+	Frame_Shift_Del	DEL	AAGTTCTCTTCCTTTTT	AAGTTCTCTTCCTTTTT	-																															atgccactaaacaaaagaggAagttctcttccttttttaag																								novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	AAGTTCTCTTCCTTTTT	AAGTTCTCTTCCTTTTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003076	exon6	c.693_709del	p.231_237del	AAGAGGAAGTTCT	.	36	14	49	0	.	.	-	50482359	AAGTTCTCTTCCTTTTT	-	50482343	7	5	30	1	0	1	0	1	0	0	0	0	14831	247	9	0	716	0	SMARCD1	12	50482343	Frame_Shift_Del	DEL	AAGTTCTCTTCCTTTTT	TCGA-ZH-A8Y2-01A-11D-A417-09	40496432	50482343	83369552	87	4713											
KRT81	3887	hgsc.bcm.edu	37	chr12	52685191	52685191	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcagcggccgggccgcGgcccgcaggccgagatgcag	6	2	18	15	6	0	1	0	0	0	1	0	2	0	1	4	4	4	4	4	4	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_002281	exon1	c.C59T	p.P20L	GGCCGCGGCCCGC	.	84	4	40	0	.	.	A	52685191	G	A	52685191	3	1	30	1	0	0	0	0	1	0	0	0	8538	1116	39	1	1494	1	KRT81	12	52685191	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	2202848	52685191	81166704	88	4714											
SLC39A5	283375	hgsc.bcm.edu;bcgsc.ca	37	chr12	56630250	56630250	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ggagaatggcagtgggatggCccttcagcccctacaggcag	9	6	15	11	0	1	1	1	0	0	1	1	3	1	2	3	5	2	2	3	5	2	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_173596	exon9	c.C1016T	p.A339V	GGATGGCCCTTCA	.	71	4	74	0	.	.	T	56630250	C	T	56630250	3	4	30	1	0	0	0	0	1	0	0	0	14676	739	26	3	1038	3	SLC39A5	12	56630250	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	3945059	56630250	77221645	89	4715											
AGAP2	116986	hgsc.bcm.edu	37	chr12	58131312	58131312	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctcccccggcggcggcggCggtggcggcggcagagaccg	3	2	19	17	8	0	1	0	0	0	1	1	2	1	1	4	8	0	1	4	8	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	AGAP2_ENST00000547588,NS,carcinoma,0,1	AGAP2_ENST00000547588	NM_001122772	exon1	c.G718A	p.A240T	CGGCGGCGGTGGC	.	38	2	30	0	.	0	T	58131312	C	T	58131312	3	4	30	1	0	0	0	0	1	0	0	0	367	768	27	1	2936	1	AGAP2	12	58131312	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	1501062	58131312	75720583	90	4716											
CKAP4	10970	hgsc.bcm.edu	37	chr12	106633701	106633701	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggcctccatgtcccactCtctggacttggctgaggtct	5	11	11	14	0	2	1	0	1	2	0	5	2	4	2	3	4	0	1	3	4	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CKAP4,NS,carcinoma,0,1	CKAP4	NM_006825	exon2	c.G910T	p.E304X	CCCACTCTCTGGA	.	55	3	40	0	.	0	A	106633701	C	A	106633701	4	1	30	1	0	0	0	0	0	1	0	0	3467	922	32	3	902	3	CKAP4	12	106633701	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	48502389	106633701	27218194	91	4717											
GLTP	51228	hgsc.bcm.edu	37	chr12	110295408	110295408	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atttctttctccacctccagGatgttctgcagggtccggaa	7	13	9	12	1	3	0	0	0	3	0	6	2	5	2	4	3	1	2	4	3	1	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	GLTP,mouth,carcinoma,0,1	GLTP	NM_016433	exon3	c.C219A	p.I73I	CTCCAGGATGTTC	.	42	2	39	0	.	0	T	110295408	G	T	110295408	2	4	30	1	0	0	0	0	0	0	0	1	6513	1164	41	3		3	GLTP	12	110295408	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	3661707	110295408	23556487	92	4718											
GPR133	283383	ucsc.edu	37	chr12	131456080	131456080	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cgcttctctattacggcaggTacaacagctcctgcatcagc	9	10	8	14	2	2	0	1	0	1	0	4	0	3	0	1	2	6	5	1	2	4	4	rs201546462		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	GPR133	NM_198827	exon4	c.T265G	p.Y89D	GGCAGGTACAACA	.	52	17	61	16	.	136	G	131456080	T	G	131456080	3	3	30	1	0	0	0	0	1	0	0	0	6683	1638	57	4	279	4	GPR133	12	131456080	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	21160672	131456080	2395815	93	4719											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132504692	132504692	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ggcagcccccaccacggcctCtgctgctccacagggcccgc	5	4	11	21	2	1	0	0	0	1	0	2	0	2	0	6	3	3	3	6	3	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015409	exon22	c.C4376G	p.S1459C	CGGCCTCTGCTGC	.	16	15	24	0	.	.	G	132504692	C	G	132504692	3	3	30	1	0	0	0	0	1	0	0	0	5177	913	32	5	4455	5	EP400	12	132504692	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	1048612	132504692	1347203	94	4720											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32753081	32753081	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tttgttttggagttgcaaaaCccagtattatgagcccagga	11	13	10	7	0	0	1	0	1	0	0	0	3	0	3	2	2	3	4	2	2	4	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_023037	exon22	c.C2782A	p.P928T	GCAAAACCCAGTA	.	77	21	77	0	.	.	A	32753081	C	A	32753081	3	1	30	1	0	0	0	0	1	0	0	0	6098	507	18	3	2868	3	FRY	13	32753081	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		32753081	82416797	95	4721											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	98652792	98652792	+	Splice_Site	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taattctgtttatgtgtttaGcaatgcagttgcaggcgaga	10	15	11	5	1	1	1	0	0	1	1	1	2	1	1	0	1	3	6	0	1	4	7	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_002271	exon13	c.1056-1G>A	.	TGTTTAGCAATGC	.	38	10	30	0	.	.	A	98652792	G	A	98652792	5	1	30	1	0	0	0	0	0	0	1	0	7840	985	34	3	1097	3	IPO5	13	98652792	Splice_Site	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	65899711	98652792	16517086	96	4722											
MYH7	4625	hgsc.bcm.edu	37	chr14	23896926	23896926	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaatgatgttgtagtccaCgatgccggcatagtggatca	10	10	12	9	2	1	1	1	1	0	0	2	3	2	2	3	2	1	3	3	2	3	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon16	c.G1756A	p.V586M	AGTCCACGATGCC	.	37	2	56	0	.	0	T	23896926	C	T	23896926	3	4	30	1	0	0	0	0	1	0	0	0	10087	536	19	1	4151	1	MYH7	14	23896926	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		23896926	83452614	97	4723											
IRF9	10379	hgsc.bcm.edu	37	chr14	24632181	24632181	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gctttctttcctaggcctggGcaatatttaagggaaagtat	10	14	10	7	0	1	0	0	0	1	0	2	1	2	1	2	3	0	3	2	3	6	7	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IRF9,caecum,carcinoma,0,1	IRF9	NM_006084	exon3	c.G187A	p.A63T	GCCTGGGCAATAT	.	44	2	49	0	.	0	A	24632181	G	A	24632181	3	1	30	1	0	0	0	0	1	0	0	0	7881	1203	42	3	193	3	IRF9	14	24632181	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	735255	24632181	82717359	98	4724											
TINF2	26277	hgsc.bcm.edu	37	chr14	24710311	24710311	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctgcatccaactcagCacatcctgaagctgtgggca	10	7	10	14	0	1	1	1	1	0	0	3	1	3	1	3	2	4	5	3	2	2	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TINF2_ENST00000267415,caecum,carcinoma,0,2	TINF2_ENST00000267415	NM_001099274	exon5	c.G519A	p.V173V	ACTCAGCACATCC	.	31	2	45	0	.	0	T	24710311	C	T	24710311	2	4	30	1	0	0	0	0	0	0	0	1	15983	697	25	3		3	TINF2	14	24710311	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	78130	24710311	82639229	99	4725											
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	104471611	104471611	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcttgtttcttttcagCgttgtccattaggaagcacg	7	15	10	9	2	3	0	2	0	1	0	4	1	4	1	1	2	2	4	1	2	2	6	rs199531888		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TDRD9_ENST00000409874,NS,carcinoma,0,2	TDRD9_ENST00000409874	NM_153046	exon15	c.C1582T	p.R528C	TTTCAGCGTTGTC	.	41	4	51	0	0.001	0	T	104471611	C	T	104471611	3	4	30	1	0	0	0	0	1	0	0	0	15795	782	27	1	1640	1	TDRD9	14	104471611	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	79761300	104471611	2877929	100	4726											
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	845949	845949	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctgcctcccatcccctaggtGagcacacagctgtacagcac	9	7	8	17	0	0	1	0	1	0	0	2	1	2	1	4	1	5	4	4	1	2	2	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_022092	exon18	c.G2328A	p.V776V	CTAGGTGAGCACA	.	20	7	16	0	.	.	A	845949	G	A	845949	2	1	30	1	0	0	0	0	0	0	0	1	3436	1277	45	3		3	CHTF18	16	845949	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		845949	89508804	101	4727											
DOK4	0	broad.mit.edu;bcgsc.ca	37	chr16	57509842	57509842	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgctggaggatttccGgaacaccagccagcacctcc	8	7	9	17	1	0	0	0	0	0	0	2	3	2	3	7	3	4	2	7	3	1	2	rs368504381		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	DOK4	NM_018110	exon3	c.C94T	p.R32W	ATTTCCGGAACAC	.	72	6	70	1	.	19	A	57509842	G	A	57509842	3	1	30	1	0	0	0	0	1	0	0	0	4726	1115	39	1	914	1	DOK4	16	57509842	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	56663893	57509842	32844911	102	4728											
ZNF276	92822	ucsc.edu	37	chr16	89805162	89805162	+	Nonstop_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccatgccgcccactaggccTcagaccacaggggaggggct	8	4	13	16	1	1	1	1	0	0	1	1	2	1	2	5	5	1	1	5	5	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ZNF276	.	.	.	.	TAGGCCTCAGACC	.	31	7	18	1	.	70	C	89805162	T	C	89805162	4	2	30	1	0	0	0	0	0	0	0	0	17869	1566	54	4		4	ZNF276	16	89805162	Nonstop_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	32295320	89805162	549591	103	4729											
TM4SF5	9032	hgsc.bcm.edu	37	chr17	4675353	4675353	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acaccaaccatctcagcttgCaagtctggctcatgggcggc	9	8	10	14	1	3	0	2	0	2	0	4	0	3	0	2	3	3	3	2	3	2	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TM4SF5,NS,carcinoma,0,1	TM4SF5	NM_003963	exon1	c.C136T	p.Q46X	AGCTTGCAAGTCT	.	50	3	38	0	.	0	T	4675353	C	T	4675353	4	4	30	1	0	0	0	0	0	1	0	0	16031	711	25	3	138	3	TM4SF5	17	4675353	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		4675353	76519857	104	4730											
DHRS7C	201140	bcgsc.ca	37	chr17	9684863	9684863	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctagcctctcccagttctttCcacacagcaccagccttgcc	7	10	5	19	0	2	0	0	0	2	0	4	0	3	0	6	0	4	2	6	0	1	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	DHRS7C	NM_001220493	exon2	c.G203T	p.G68V	TTCTTTCCACACA	.	54	4	42	0	.	34	A	9684863	A	A	9684863	3	1	30	1	0	0	0	0	1	0	0	0	4525	855	30	3	752	3	DHRS7C	17	9684863	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	5009510	9684863	71510347	105	4731											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29220847	29220847	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	catggataacatgtccttctTagatgcacttttaactgatg	11	15	7	8	0	1	2	0	1	1	1	2	3	2	3	1	1	3	1	1	1	3	5	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_024857	exon21	c.T4976C	p.L1659S	CCTTCTTAGATGC	.	111	24	64	0	.	.	C	29220847	T	C	29220847	3	2	30	1	0	0	0	0	1	0	0	0	1075	1764	61	4	5058	4	ATAD5	17	29220847	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	19535984	29220847	51974363	106	4732											
CCDC103	388389	hgsc.bcm.edu	37	chr17	42979874	42979874	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcctcttccagacagatgtgGgatttggacttcttggggag	7	12	14	8	0	2	2	0	0	2	2	3	5	3	5	2	4	0	0	2	4	0	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CCDC103,colon,carcinoma,0,1	CCDC103	NM_001258395	exon4	c.G418T	p.G140X	GATGTGGGATTTG	.	30	2	21	0	.	0	T	42979874	G	T	42979874	4	4	30	1	0	0	0	0	0	1	0	0	2756	1233	43	3	428	3	CCDC103	17	42979874	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	13759027	42979874	38215336	107	4733											
MAP3K14	9020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	43351847	43351847	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttccagcagctccatGaagatgttgacccaaggccc	10	9	8	14	0	0	3	0	2	0	1	2	3	2	3	5	1	3	3	5	1	3	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MAP3K14,NS,carcinoma,0,1	MAP3K14	.	p.F467L	.	.	CTCCATGAAGATG	.	89	13	65	0	.	0	T	43351847	G	T	43351847	3	4	30	1	0	0	0	0	1	0	0	0	9298	1281	45	3	1479	3	MAP3K14	17	43351847	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	371973	43351847	37843363	108	4734											
PPM1D	8493	hgsc.bcm.edu	37	chr17	58740756	58740756	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gaagaagcatagacgaaatgGcttaagtcgaagtagtggtg	15	8	14	4	2	0	2	0	0	0	2	1	5	0	2	0	2	1	3	0	2	7	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003620	exon6	c.G1661T	p.G554V	GAAATGGCTTAAG	.	66	3	51	0	.	.	T	58740756	G	T	58740756	3	4	30	1	0	0	0	0	1	0	0	0	12386	1203	42	3	1683	3	PPM1D	17	58740756	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	15388909	58740756	22454454	109	4735											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu	37	chr17	62271115	62271115	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcacttccctcagctggCggcttctcttctgaagtctc	4	14	7	16	1	5	1	2	1	3	0	9	1	7	1	2	2	1	2	2	2	1	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018469	exon4	c.G1980A	p.P660P	AGCTGGCGGCTTC	.	81	4	69	0	.	.	T	62271115	C	T	62271115	2	4	30	1	0	0	0	0	0	0	0	1	15840	755	27	1		1	TEX2	17	62271115	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	3530359	62271115	18924095	110	4736											
CACNG5	27091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	64873577	64873577	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tggaggagggtgtgattgtgCcccagaaccagagcaccgag	10	6	16	9	1	0	3	0	1	0	2	0	6	0	5	4	3	3	1	4	3	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_145811	exon1	c.C127T	p.P43S	ATTGTGCCCCAGA	.	30	11	16	0	.	.	T	64873577	C	T	64873577	3	4	30	1	0	0	0	0	1	0	0	0	2578	739	26	3	129	3	CACNG5	17	64873577	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	2602462	64873577	16321633	111	4737											
ZNF676	163223	hgsc.bcm.edu	37	chr19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	gggttgagacgctactaaatCctttgccacattcttcacat	10	13	7	11	1	2	1	1	1	1	1	3	2	3	1	2	1	2	2	2	1	3	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	80	4	60	0	.	.	G	22363737	C	G	22363737	3	3	30	1	0	0	0	0	1	0	0	0	18140	855	30	5	988	5	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09		22363737	36765246	112	4738											
ZNF98	148198	broad.mit.edu	37	chr19	22586259	22586259	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgtgcggtgtccaggCattgccactcctccagagag	6	10	12	13	1	1	1	0	0	1	1	4	2	4	1	4	2	3	2	4	2	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	ZNF98_ENST00000357774,right_lower_lobe,carcinoma,+1,2	ZNF98	NM_001098626	exon2	c.G86A	p.C29Y	TCCAGGCATTGCC	.	84	5	87	1	.	230	T	22586259	C	T	22586259	3	4	30	1	0	0	0	0	1	0	0	0	18245	710	25	3	1644	3	ZNF98	19	22586259	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	222522	22586259	36542724	113	4739											
ZNF254	9534	bcgsc.ca	37	chr19	24310210	24310210	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatgtgaagaatgtggcaagGcatttatatggtcctcaacc	13	11	10	7	0	1	2	1	1	0	1	2	2	2	2	2	3	1	2	2	3	7	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ZNF254	NM_203282	exon4	c.G1408T	p.A470S	GGCAAGGCATTTA	.	65	4	71	0	.	88	T	24310210	T	T	24310210	3	4	30	1	0	0	0	0	1	0	0	0	17856	1203	42	3	1422	3	ZNF254	19	24310210	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	1723951	24310210	34818773	114	4740											
ZNF829	374899	hgsc.bcm.edu;bcgsc.ca	37	chr19	37382535	37382535	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gagcctttattaaaggccttCccacattcattacattcata	12	14	4	11	0	2	0	2	0	0	0	3	1	3	0	3	1	2	0	3	1	5	8	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001171979	exon6	c.G1401T	p.G467G	GGCCTTCCCACAT	.	62	4	66	0	.	.	A	37382535	C	A	37382535	2	1	30	1	0	0	0	0	0	0	0	1	18229	842	30	3		3	ZNF829	19	37382535	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	13072325	37382535	21746448	115	4741											
GSK3A	2931	hgsc.bcm.edu	37	chr19	42737289	42737289	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggggtgagctttaatctgAgggaacttgaactccgtgta	10	11	13	7	1	1	3	0	3	1	0	2	4	2	4	1	3	3	2	1	3	4	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_019884	exon8	c.T1071C	p.P357P	AATCTGAGGGAAC	.	79	4	58	0	.	.	G	42737289	A	G	42737289	2	3	30	1	0	0	0	0	0	0	0	1	6864	291	11	4		4	GSK3A	19	42737289	Silent	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	5354754	42737289	16391694	116	4742											
MYADM	91663	ucsc.edu	37	chr19	54376839	54376839	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caccacgacgtcatcttcggGcctggggtcccccatgatcg	6	8	11	16	4	2	1	1	1	1	0	5	2	3	1	4	3	0	0	4	3	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	MYADM	NM_001020818	exon2	c.G56T	p.G19V	CTTCGGGCCTGGG	.	36	4	27	0	.	39	T	54376839	G	T	54376839	3	4	30	1	0	0	0	0	1	0	0	0	10054	1203	42	3	58	3	MYADM	19	54376839	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	11639550	54376839	4752144	117	4743											
ZNF134	7693	hgsc.bcm.edu	37	chr19	58132757	58132757	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccagaaagttcacactGcaggcaggctttaggagtgc	11	7	13	10	0	1	1	1	0	0	1	1	2	1	2	1	4	2	5	1	4	2	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003435	exon3	c.G1270A	p.A424T	CACACTGCAGGCA	.	63	4	74	0	.	.	A	58132757	G	A	58132757	3	1	30	1	0	0	0	0	1	0	0	0	17782	1319	46	3	1276	3	ZNF134	19	58132757	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	3755918	58132757	996226	118	4744											
CPXM1	56265	hgsc.bcm.edu	37	chr20	2777840	2777840	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctggcctgactgcccacctGagactgggcaggccaggatc	7	6	13	15	0	0	2	0	2	0	1	1	4	0	3	5	4	1	1	5	4	0	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CPXM1,NS,carcinoma,0,1	CPXM1	NM_001184699	exon6	c.C830A	p.S277X	CCACCTGAGACTG	.	50	2	39	0	.	0	T	2777840	G	T	2777840	4	4	30	1	0	0	0	0	0	1	0	0	3860	1294	45	3	1410	3	CPXM1	20	2777840	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		2777840	60247680	119	4745											
C20orf194	25943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	3240180	3240180	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtttccggagaagggacttgGcttgatggaggactgaattg	9	11	16	5	1	0	3	0	2	0	1	1	7	1	6	1	5	0	2	1	5	2	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001009984	exon33	c.C3001A	p.P1001T	GACTTGGCTTGAT	.	27	4	26	0	.	.	T	3240180	G	T	3240180	3	4	30	1	0	0	0	0	1	0	0	0	2113	1203	42	3	552	3	C20orf194	20	3240180	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	462340	3240180	59785340	120	4746											
CENPB	1059	hgsc.bcm.edu;broad.mit.edu	37	chr20	3765895	3765895	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcttcttcCtcctcctcctcctcttcctc	0	18	0	23	0	4	0	0	0	4	0	14	0	13	0	9	0	0	0	9	0	0	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CENPB,NS,carcinoma,0,1	CENPB	NM_001810	exon1	c.G1236A	p.E412E	TTCTTCCTCCTCC	.	24	3	12	0	.	0	T	3765895	C	T	3765895	2	4	30	1	0	0	0	0	0	0	0	1	3249	680	24	3		3	CENPB	20	3765895	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	525715	3765895	59259625	121	4747											
RBL1	5933	hgsc.bcm.edu	37	chr20	35651208	35651208	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagacatagatcacgtaagcGtacacttgccaaatgataga	16	9	8	8	2	1	4	1	1	0	3	1	4	1	4	1	0	3	2	1	0	6	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	RBL1,NS,carcinoma,0,1	RBL1	NM_183404	exon17	c.C2404T	p.R802C	GTAAGCGTACACT	.	73	3	56	0	.	0	A	35651208	G	A	35651208	3	1	30	1	0	0	0	0	1	0	0	0	13161	1145	40	1	835	1	RBL1	20	35651208	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	31885313	35651208	27374312	122	4748											
SGK2	10110	hgsc.bcm.edu;bcgsc.ca	37	chr20	42213625	42213625	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	attcctgggattttcttatgCgccagaggatgatgacatct	9	14	10	8	1	2	3	0	2	2	1	3	5	3	5	2	2	1	0	2	2	1	4	rs140923021		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_016276	exon12	c.C1253T	p.A418V	CTTATGCGCCAGA	.	62	4	57	0	0.000	.	T	42213625	C	T	42213625	3	4	30	1	0	0	0	0	1	0	0	0	14263	768	27	1	1299	1	SGK2	20	42213625	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	6562417	42213625	20811895	123	4749											
ICOSLG	23308	bcgsc.ca	37	chr21	45656893	45656893	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cgccccgcagcatgccggccGgtgacatcagggctcggttc	5	6	14	16	5	1	1	1	1	0	0	3	1	1	1	4	4	2	4	4	4	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ICOSLG	NM_015259	exon3	c.C263A	p.P88Q	CCGGCCGGTGACA	.	35	4	38	0	.	20	T	45656893	T	T	45656893	3	4	30	1	0	0	0	0	1	0	0	0	7531	1116	39	2	665	2	ICOSLG	21	45656893	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		45656893	2473002	124	4750											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47769730	47769730	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagcgagaaagaaaaacagcTggaggtgggcagcagcttcg	14	4	16	7	2	0	2	0	0	0	2	1	5	0	3	0	3	5	4	0	3	3	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006031	exon8	c.T1340C	p.L447P	AACAGCTGGAGGT	.	52	34	79	0	.	.	C	47769730	T	C	47769730	3	2	30	1	0	0	0	0	1	0	0	0	11637	1580	55	4	1370	4	PCNT	21	47769730	Missense_Mutation	SNP	T	TCGA-ZH-A8Y2-01A-11D-A417-09	2112837	47769730	360165	125	4751											
MICAL3	57553	hgsc.bcm.edu;bcgsc.ca	37	chr22	18370200	18370200	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcggcatttaggtccaaggtGtctgggaatagaaaccagtg	11	10	13	7	1	1	1	0	0	1	1	3	2	2	2	2	4	1	1	2	4	5	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015241	exon14	c.C1893A	p.D631E	CAAGGTGTCTGGG	.	57	4	41	0	.	.	T	18370200	G	T	18370200	3	4	30	1	0	0	0	0	1	0	0	0	9619	1391	48	3	4928	3	MICAL3	22	18370200	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		18370200	32934366	126	4752											
PI4KA	5297	ucsc.edu;bcgsc.ca	37	chr22	21150447	21150447	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ttcctacctttagggcagggCccttctcgcttgccctctcg	3	13	9	16	2	2	0	0	0	2	0	5	0	3	0	4	2	2	2	4	2	2	6	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PI4KA	NM_058004	exon18	c.G2264T	p.G755V	GCAGGGCCCTTCT	.	24	4	21	0	.	313	A	21150447	C	A	21150447	3	1	30	1	0	0	0	0	1	0	0	0	11921	739	26	3	4196	3	PI4KA	22	21150447	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	2780247	21150447	30154119	127	4753											
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	35719501	35719501	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctctcagtcctgggctgacGcgttccgcagctcgcccgat	4	9	11	17	5	1	1	1	1	1	0	5	2	3	1	4	1	1	4	4	1	0	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135732	exon5	c.G379A	p.A127T	GCTGACGCGTTCC	.	14	4	10	0	.	.	A	35719501	G	A	35719501	3	1	30	1	0	0	0	0	1	0	0	0	16411	1087	38	1	397	1	TOM1	22	35719501	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	14569054	35719501	15585065	128	4754											
JOSD1	9929	hgsc.bcm.edu	37	chr22	39085046	39085046	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatccagtgctgccttttgaGgggcagtttcagtggacccc	6	11	13	11	0	1	1	1	1	0	0	2	3	2	2	4	3	2	3	4	3	0	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	JOSD1,NS,lymphoid_neoplasm,+2,1	JOSD1	NM_014876	exon3	c.C403A	p.L135I	TTTTGAGGGGCAG	.	34	2	37	0	.	+2	T	39085046	G	T	39085046	3	4	30	1	0	0	0	0	1	0	0	0	8002	1000	35	3	213	3	JOSD1	22	39085046	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	3365545	39085046	12219520	129	4755											
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41723243	41723243	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggcgctggaggacagcgagAaggcgctgggcctggacagt	9	4	19	9	3	0	1	0	0	0	1	0	5	0	4	1	6	1	2	1	6	1	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017590	exon5	c.A319G	p.K107E	AGCGAGAAGGCGC	.	35	11	37	0	.	.	G	41723243	A	G	41723243	3	3	30	1	0	0	0	0	1	0	0	0	17632	247	9	4	333	4	ZC3H7B	22	41723243	Missense_Mutation	SNP	A	TCGA-ZH-A8Y2-01A-11D-A417-09	2638197	41723243	9581323	130	4756											
SLC9A7	84679	hgsc.bcm.edu	37	chrX	46541898	46541898	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggccctgtcttcctgaGtgcagctgagtgatttgtca	7	13	12	9	0	2	4	1	4	1	0	3	4	3	4	2	1	2	2	2	1	1	2	rs145339243	alternate_allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001257291	exon2	c.C398A	p.T133N	TCCTGAGTGCAGC	.	48	4	51	0	.	.	T	46541898	G	T	46541898	3	4	30	1	0	0	0	0	1	0	0	0	14774	1029	36	3	1843	3	SLC9A7	23	46541898	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09		46541898	108728662	131	4757											
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47426127	47426127	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	catccgctccacgtccactcCcaacgtccatatggtcagca	9	8	6	18	3	1	0	1	0	0	0	6	0	6	0	5	1	2	2	5	1	2	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001256196	exon7	c.C656T	p.P219L	CCACTCCCAACGT	.	54	36	66	0	.	.	T	47426127	C	T	47426127	3	4	30	1	0	0	0	0	1	0	0	0	834	623	22	3	669	3	ARAF	23	47426127	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	884229	47426127	107844433	132	4758											
PAGE2B	389860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	55102523	55102523	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aatcctcagaaagaggaaatGaccaagagtcttcccagcca	16	6	8	11	0	2	4	1	1	1	3	4	5	4	5	4	1	1	0	4	1	4	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001015038	exon2	c.G49A	p.D17N	GGAAATGACCAAG	.	73	45	109	0	.	.	A	55102523	G	A	55102523	3	1	30	1	0	0	0	0	1	0	0	0	11438	1290	45	3	51	3	PAGE2B	23	55102523	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	7676396	55102523	100168037	133	4759											
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	65476101	65476101	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tttggaggaaaatgtggcaaCccatgggtcccaggatccag	11	8	13	9	0	0	0	0	0	0	0	2	3	2	3	3	5	1	1	3	5	3	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_138737	exon17	c.C2987T	p.T996I	TGGCAACCCATGG	.	55	15	70	0	.	.	T	65476101	C	T	65476101	3	4	30	1	0	0	0	0	1	0	0	0	7095	507	18	3	3053	3	HEPH	23	65476101	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	10373578	65476101	89794459	134	4760											
PRPS1	5631	bcgsc.ca	37	chrX	106888557	106888557	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacatggctgacacttgtggCacaatctgccatgcagctga	10	9	11	11	0	1	2	0	2	1	0	1	3	1	2	1	2	3	4	1	2	1	1	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PRPS1	NM_002764	exon5	c.C681T	p.G227G	TTGTGGCACAATC	.	51	4	71	0	.	33	T	106888557	T	T	106888557	2	4	30	1	0	0	0	0	0	0	0	1	12630	697	25	3		3	PRPS1	23	106888557	Silent	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	41412456	106888557	48382003	135	4761											
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	128881717	128881717	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aacccatttatgccctgcagGaggcattcacaggtgattca	11	10	9	11	0	2	1	2	1	0	0	2	2	2	2	2	3	3	2	2	3	2	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003399	exon7	c.G625T	p.E209X	CTGCAGGAGGCAT	.	43	5	46	0	.	.	T	128881717	G	T	128881717	4	4	30	1	0	0	0	0	0	1	0	0	17503	1175	41	3	651	3	XPNPEP2	23	128881717	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	21993160	128881717	26388843	136	4762											
MBNL3	55796	hgsc.bcm.edu	37	chrX	131526199	131526199	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tatctgaacgcatcagttttGggccaacagctcctggcatt	9	12	9	11	1	2	1	1	1	1	0	3	1	3	1	2	2	3	4	2	2	3	4	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018388	exon3	c.C506A	p.P169Q	AGTTTTGGGCCAA	.	99	3	117	0	.	.	T	131526199	G	T	131526199	3	4	30	1	0	0	0	0	1	0	0	0	9405	1348	47	3	643	3	MBNL3	23	131526199	Missense_Mutation	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	2644482	131526199	23744361	137	4763											
ZIC3	7547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	136649399	136649399	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gggcacgtggacaacaaccaGgtccacctggggctgcgtgg	8	5	16	12	2	0	0	0	0	0	0	1	1	1	1	3	6	3	2	3	6	2	0	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003413	exon1	c.G549A	p.Q183Q	CAACCAGGTCCAC	.	28	11	36	0	.	.	A	136649399	G	A	136649399	2	1	30	1	0	0	0	0	0	0	0	1	17738	991	35	3		3	ZIC3	23	136649399	Silent	SNP	G	TCGA-ZH-A8Y2-01A-11D-A417-09	5123200	136649399	18621161	138	4764											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	144904919	144904919	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	aggacaggcaaagttttggaCccatcatggtgtaccagacc	12	8	11	10	0	1	1	1	0	0	1	1	3	1	3	3	4	1	3	3	4	2	3	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001144005	exon5	c.C976T	p.P326S	TTTGGACCCATCA	.	44	5	77	0	.	.	T	144904919	C	T	144904919	3	4	30	1	0	0	0	0	1	0	0	0	14797	507	18	3	978	3	SLITRK2	23	144904919	Missense_Mutation	SNP	C	TCGA-ZH-A8Y2-01A-11D-A417-09	8255520	144904919	10365641	139	4765											
SLC25A33	84275	hgsc.bcm.edu	37	chr1	9640237	9640238	+	Frame_Shift_Ins	INS	-	-	A																															ccacaagtttttttggacttINSatggcagctgctgctctttc																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032315	exon6	c.708_709insA	p.L236fs	TGGACTTATGGCA	.	45	23	68	0	.	.	A	9640238	-	A	9640237	7	5	31	1	0	1	1	0	0	0	0	0	14552	1741	61	0	730	0	SLC25A33	1	9640237	Frame_Shift_Ins	INS	-	TCGA-ZH-A8Y4-01A-11D-A417-09		9640237	239610384	1	4766											
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11897068	11897068	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	acccacagaaatccagcatcCtcacccgggctggcgagcag	11	4	10	16	2	1	1	1	0	0	1	3	2	3	1	4	2	2	3	4	2	1	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CLCN6,trunk,malignant_melanoma,0,1	CLCN6	NM_001286	exon19	c.C1993G	p.L665V	AGCATCCTCACCC	.	10	6	21	0	.	0	G	11897068	C	G	11897068	3	3	31	1	0	0	0	0	1	0	0	0	3490	681	24	5	2077	5	CLCN6	1	11897068	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	2256831	11897068	237353553	2	4767											
TMEM200B	399474	ucsc.edu	37	chr1	29447458	29447458	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccctcctcctcccaatttggCatagcccccaagactgaggc	8	8	7	18	0	0	2	0	1	0	1	3	2	3	2	6	2	1	1	6	2	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TMEM200B	NM_001171868	exon2	c.G883A	p.A295T	ATTTGGCATAGCC	.	34	4	73	0	.	9	T	29447458	C	T	29447458	3	4	31	1	0	0	0	0	1	0	0	0	16184	710	25	3	44	3	TMEM200B	1	29447458	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	17550390	29447458	219803163	3	4768											
SNIP1	79753	hgsc.bcm.edu	37	chr1	38006254	38006254	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctttggtgggaatggccccGgtgtctgtcccggtcactgt	3	12	14	12	2	2	0	1	0	1	0	3	1	3	1	4	5	0	0	4	5	1	1	rs143428642	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SNIP1,rectum,carcinoma,0,1	SNIP1	NM_024700	exon3	c.C430T	p.R144W	GGCCCCGGTGTCT	.	48	3	48	0	0.000	0	A	38006254	G	A	38006254	3	1	31	1	0	0	0	0	1	0	0	0	14902	1115	39	1	768	1	SNIP1	1	38006254	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	8558796	38006254	211244367	4	4769											
DHCR24	1718	hgsc.bcm.edu	37	chr1	55352654	55352654	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgcacgtagtagtagatatCgaagataagcgagagcggca	14	6	14	7	5	0	3	0	0	0	3	1	5	0	3	0	1	2	5	0	1	6	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	DHCR24,bladder,carcinoma,0,1	DHCR24	NM_014762	exon1	c.G139T	p.D47Y	AGATATCGAAGAT	.	20	2	19	0	.	0	A	55352654	C	A	55352654	3	1	31	1	0	0	0	0	1	0	0	0	4504	884	31	2	1447	2	DHCR24	1	55352654	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	17346400	55352654	193897967	5	4770											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62237282	62237282	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttctagcagcctaaatgataCaactctgcctgaaacagtga	14	10	7	10	0	2	3	0	3	2	0	2	3	2	3	2	0	6	1	2	0	6	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_176877	exon6	c.C704A	p.T235K	ATGATACAACTCT	.	67	30	82	0	.	.	A	62237282	C	A	62237282	3	1	31	1	0	0	0	0	1	0	0	0	7775	478	17	3	722	3	INADL	1	62237282	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	6884628	62237282	187013339	6	4771											
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu	37	chr1	62672856	62672856	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatagatgacagagatGgaaatcgcaatgtccattta	16	10	9	6	1	0	3	0	1	0	2	2	5	1	4	1	1	0	2	1	1	6	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001164835	exon4	c.G556T	p.G186X	AGAGATGGAAATC	.	100	7	92	0	.	.	T	62672856	G	T	62672856	4	4	31	1	0	0	0	0	0	1	0	0	8628	1349	47	3	558	3	L1TD1	1	62672856	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	435574	62672856	186577765	7	4772											
RNPC3	55599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	104077437	104077437	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgataaagaaaaaaaagaacTtggttatttaacagtagaaa	22	10	7	2	0	0	4	0	1	0	3	0	4	0	4	0	1	2	2	0	1	11	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017619	exon4	c.T401G	p.L134R	AAGAACTTGGTTA	.	50	25	40	0	.	.	G	104077437	T	G	104077437	3	3	31	1	0	0	0	0	1	0	0	0	13560	1609	56	4		4	RNPC3	1	104077437	Missense_Mutation	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	41404581	104077437	145173184	8	4773											
CHD1L	9557	hgsc.bcm.edu;bcgsc.ca	37	chr1	146724303	146724303	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacctacgctcttaccagctGgagggagtaaactggctcgc	9	8	11	13	2	1	0	0	0	1	0	2	2	1	2	2	3	4	4	2	3	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004284	exon2	c.G153T	p.L51L	CCAGCTGGAGGGA	.	71	4	64	0	.	.	T	146724303	G	T	146724303	2	4	31	1	0	0	0	0	0	0	0	1	3346	1335	47	3		3	CHD1L	1	146724303	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	42646866	146724303	102526318	9	4774											
HDGF	3068	ucsc.edu;bcgsc.ca	37	chr1	156714048	156714048	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agcttcccttcctcgtcgctGctgccctctgcattcccctt	2	14	6	19	2	1	0	0	0	1	0	6	0	4	0	5	0	4	4	5	0	0	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	HDGF	NM_001126050	exon4	c.C444T	p.S148S	GTCGCTGCTGCCC	.	35	4	32	0	.	60	A	156714048	G	A	156714048	2	1	31	1	0	0	0	0	0	0	0	1	7059	1310	46	3		3	HDGF	1	156714048	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	9989745	156714048	92536573	10	4775											
UHMK1	127933	broad.mit.edu	37	chr1	162468011	162468011	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgccgccgagtatggtttccGcaaagagagggcggcgctgg	7	7	17	10	5	0	1	0	0	0	1	1	3	1	1	3	4	1	4	3	4	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	UHMK1	NM_144624	exon1	c.G221T	p.R74L	GTTTCCGCAAAGA	.	52	3	32	0	.	65	T	162468011	G	T	162468011	3	4	31	1	0	0	0	0	1	0	0	0	17026	1087	38	2	273	2	UHMK1	1	162468011	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	5753963	162468011	86782610	11	4776											
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	166963277	166963277	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tattataggtgaaattccacGaggatttcgatttcattgtc	11	16	8	6	2	1	1	1	1	0	0	4	4	2	2	1	2	0	0	1	2	4	7	rs199624416	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032858	exon5	c.G494A	p.R165Q	TTCCACGAGGATT	.	141	20	79	0	0.001	.	A	166963277	G	A	166963277	3	1	31	1	0	0	0	0	1	0	0	0	9200	1058	37	1	512	1	MAEL	1	166963277	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	4495266	166963277	82287344	12	4777											
ANKRD45	339416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	173628573	173628573	+	Splice_Site	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tccattaactccaaaaatacCtatgaccaaaaaaataaaaa	23	8	1	9	0	0	1	0	1	0	0	2	1	2	1	4	0	2	0	4	0	11	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AAATACCTATGAC	.	65	17	54	0	.	.	A	173628573	C	A	173628573	5	1	31	1	0	0	0	0	0	0	1	0	667	695	24	3		3	ANKRD45	1	173628573	Splice_Site	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	6665296	173628573	75622048	13	4778											
PRG4	10216	broad.mit.edu	37	chr1	186276029	186276029	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	caagtctgcacccaccactcCcaaggagcctgcacccacca	11	4	6	20	0	1	0	0	0	1	0	2	1	2	1	6	1	3	2	6	1	2	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PRG4	NM_005807	exon7	c.C1178A	p.P393H	CCACTCCCAAGGA	.	197	5	145	0	.	259	A	186276029	C	A	186276029	3	1	31	1	0	0	0	0	1	0	0	0	12533	623	22	3	1200	3	PRG4	1	186276029	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	12647456	186276029	62974592	14	4779											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	211749440	211749445	+	In_Frame_Del	DEL	AAAAGT	AAAAGT	-																															ttcagaacaacctttccaagAaaagtaaaagactaaggcat																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	AAAAGT	AAAAGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SLC30A1,NS,carcinoma,0,1	SLC30A1	NM_021194	exon2	c.810_815del	p.270_272del	TCCAAGAAAAGTA	.	74	26	62	0	.	0	-	211749445	AAAAGT	-	211749440	7	5	31	1	0	1	0	1	0	0	0	0	14608	246	9	0	713	0	SLC30A1	1	211749440	In_Frame_Del	DEL	AAAAGT	TCGA-ZH-A8Y4-01A-11D-A417-09	25473411	211749440	37501181	15	4780											
HHIPL2	79802	hgsc.bcm.edu	37	chr1	222715437	222715437	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgtacatatagccatccagGccaaaaagaagttgtccgcc	14	8	8	11	1	0	1	0	0	0	1	2	1	2	1	5	1	2	2	5	1	6	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024746	exon3	c.C1035A	p.G345G	ATCCAGGCCAAAA	.	69	4	57	0	.	.	T	222715437	G	T	222715437	2	4	31	1	0	0	0	0	0	0	0	1	7135	1190	42	3		3	HHIPL2	1	222715437	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	10965997	222715437	26535184	16	4781											
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1668821	1668821	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaataacgactctgtcctgAggcgtcacagtgaactgagg	11	9	11	10	2	3	3	2	3	1	0	4	4	4	3	1	2	2	0	1	2	3	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_012293	exon11	c.T1317C	p.P439P	GTCCTGAGGCGTC	.	76	17	72	0	.	.	G	1668821	A	G	1668821	2	3	31	1	0	0	0	0	0	0	0	1	12899	291	11	4		4	PXDN	2	1668821	Silent	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09		1668821	241530552	17	4782											
HADHB	3032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26512787	26512787	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gactttgttttctttacaggGccatgctatgatagtggaag	9	15	11	6	0	1	1	0	1	1	0	1	3	1	2	1	2	2	2	1	2	4	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_000183	exon16	c.G1391A	p.G464D	TACAGGGCCATGC	.	68	13	60	0	.	.	A	26512787	G	A	26512787	3	1	31	1	0	0	0	0	1	0	0	0	6985	1217	42	3	1449	3	HADHB	2	26512787	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	24843966	26512787	216686586	18	4783											
GALM	130589	hgsc.bcm.edu	37	chr2	38958894	38958894	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggtgcatcatgctgcaaGcgggcgggtactagaagtat	10	8	15	8	2	1	1	1	0	0	1	1	1	1	1	0	3	5	5	0	3	5	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_138801	exon6	c.G794T	p.S265I	CTGCAAGCGGGCG	.	35	4	38	0	.	.	T	38958894	G	T	38958894	3	4	31	1	0	0	0	0	1	0	0	0	6245	971	34	3	816	3	GALM	2	38958894	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	12446107	38958894	204240479	19	4784											
INHBB	3625	hgsc.bcm.edu	37	chr2	121107289	121107289	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cctccttccacacggctgtgGtgaaccagtaccgcatgcgg	7	8	11	15	3	0	1	0	1	0	0	2	1	2	1	5	3	3	3	5	3	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	INHBB,caecum,carcinoma,0,1	INHBB	NM_002193	exon2	c.G1063T	p.V355L	GCTGTGGTGAACC	.	42	3	37	0	.	0	T	121107289	G	T	121107289	3	4	31	1	0	0	0	0	1	0	0	0	7786	1261	44	3	1069	3	INHBB	2	121107289	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	82148395	121107289	122092084	20	4785											
GTDC1	79712	hgsc.bcm.edu	37	chr2	144709619	144709619	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcctttttgaaagctgttcaGgtgtagaatacagatattca	12	14	9	6	0	2	3	2	1	0	2	2	3	2	3	1	1	2	3	1	1	5	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001006636	exon11	c.C1223A	p.P408H	TGTTCAGGTGTAG	.	86	4	75	0	.	.	T	144709619	G	T	144709619	3	4	31	1	0	0	0	0	1	0	0	0	6892	1000	35	3	161	3	GTDC1	2	144709619	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	23602330	144709619	98489754	21	4786											
ITGA4	3676	hgsc.bcm.edu;bcgsc.ca	37	chr2	182395369	182395369	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttgtccaagactgataagaGgctattggtaagtttcagtt	11	14	10	6	0	1	3	1	1	0	2	2	3	2	3	1	2	0	4	1	2	4	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_000885	exon24	c.G2657T	p.R886M	ATAAGAGGCTATT	.	70	4	102	0	.	.	T	182395369	G	T	182395369	3	4	31	1	0	0	0	0	1	0	0	0	7922	1000	35	3	2751	3	ITGA4	2	182395369	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	37685750	182395369	60804004	22	4787											
ARPC2	10109	hgsc.bcm.edu	37	chr2	219104121	219104121	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttgttcctctcaggtatgttGagtctaaaaaggacagagtc	11	13	10	7	0	2	2	1	1	2	1	5	3	3	3	1	2	0	3	1	2	4	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ARPC2,right_lower_lobe,carcinoma,0,1	ARPC2	NM_005731	exon6	c.G463A	p.E155K	TATGTTGAGTCTA	.	50	2	63	0	.	0	A	219104121	G	A	219104121	3	1	31	1	0	0	0	0	1	0	0	0	970	1291	45	3	485	3	ARPC2	2	219104121	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	36708752	219104121	24095252	23	4788											
STK11IP	114790	hgsc.bcm.edu	37	chr2	220473349	220473349	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcccctggaggggcctGagggcgtacggggcagggaa	6	6	20	9	2	0	1	0	1	0	0	1	3	1	3	3	7	1	2	3	7	2	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	STK11IP_ENST00000295641,NS,carcinoma,0,3	STK11IP_ENST00000295641	NM_052902	exon15	c.G1681T	p.E561X	GGGCCTGAGGGCG	.	34	2	37	0	.	0	T	220473349	G	T	220473349	4	4	31	1	0	0	0	0	0	1	0	0	15344	1291	45	3	1739	3	STK11IP	2	220473349	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1369228	220473349	22726024	24	4789											
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	224856592	224856592	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtcggctgccacgaaagtgcGtttctttgtgttctcgggtt	4	15	13	9	4	2	0	0	0	2	0	4	1	2	0	1	2	2	4	1	2	1	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001136530	exon4	c.C649T	p.R217C	AAGTGCGTTTCTT	.	78	14	54	0	.	.	A	224856592	G	A	224856592	3	1	31	1	0	0	0	0	1	0	0	0	14166	1145	40	1	607	1	SERPINE2	2	224856592	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	4383243	224856592	18342781	25	4790											
COL6A3	1293	hgsc.bcm.edu	37	chr2	238283545	238283545	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	accacggccacgcggacccgGtcctggcccacatccaggct	7	4	11	19	4	0	0	0	0	0	0	2	1	2	1	6	5	0	1	6	5	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	COL6A3_ENST00000392004,NS,carcinoma,0,2	COL6A3_ENST00000392004	NM_004369	exon8	c.C3189A	p.D1063E	GACCCGGTCCTGG	.	23	2	27	0	.	0	T	238283545	G	T	238283545	3	4	31	1	0	0	0	0	1	0	0	0	3724	1252	44	3	6539	3	COL6A3	2	238283545	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	13426953	238283545	4915828	26	4791											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	46940168	46940168	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcggctgcactgcacgCgcaactacatccacatgcac	10	5	10	16	3	0	0	0	0	0	0	1	0	1	0	1	2	5	6	1	2	2	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001184744	exon8	c.C655T	p.R219C	TGCACGCGCAACT	.	15	7	19	0	.	.	T	46940168	C	T	46940168	3	4	31	1	0	0	0	0	1	0	0	0	12808	768	27	1	681	1	PTH1R	3	46940168	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09		46940168	151082262	27	4792											
SETD2	29072	hgsc.bcm.edu	37	chr3	47125234	47125235	+	Frame_Shift_Ins	INS	-	-	A																															ggtctttccaactgtccaggINSagtttggtggccaaatcact																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014159	exon12	c.6036_6037insT	p.L2012fs	GTCCAGGAGTTTG	.	55	29	106	0	.	.	A	47125235	-	A	47125234	7	5	31	1	0	1	1	0	0	0	0	0	14185	1161	41	0	1698	0	SETD2	3	47125234	Frame_Shift_Ins	INS	-	TCGA-ZH-A8Y4-01A-11D-A417-09	185066	47125234	150897196	28	4793											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52437221	52437221	+	Frame_Shift_Del	DEL	T	T	-																															tccccgtcttctctctgctgTccgtggcttccacgacctcc																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004656	exon14	c.1824delC	p.D608fs	CTGCTGTCCGTGG	.	22	15	33	0	.	.	-	52437221	T	-	52437221	7	5	31	1	0	1	0	1	0	0	0	0	1309	1667	58	0	382	0	BAP1	3	52437221	Frame_Shift_Del	DEL	T	TCGA-ZH-A8Y4-01A-11D-A417-09	5311987	52437221	145585209	29	4794											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	52662939	52662939	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcaattttagaactcGcttgtagatggctgaattgg	9	15	11	6	1	0	3	0	1	0	2	1	3	0	3	0	2	3	5	0	2	5	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_018313	exon13	c.C1414T	p.R472X	GAACTCGCTTGTA	.	41	11	74	0	.	.	A	52662939	G	A	52662939	4	1	31	1	0	0	0	0	0	1	0	0	11538	1095	38	1	3562	1	PBRM1	3	52662939	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	225718	52662939	145359491	30	4795											
PRKCD	5580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	53217486	53217486	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agttccagaaagaacgcttcAacatcgacatgccgcaccgc	13	6	8	14	4	1	2	1	0	0	2	3	3	2	2	3	0	3	3	3	0	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_212539	exon8	c.A676C	p.N226H	CGCTTCAACATCG	.	43	31	62	0	.	.	C	53217486	A	C	53217486	3	2	31	1	0	0	0	0	1	0	0	0	12561	130	5	4	702	4	PRKCD	3	53217486	Missense_Mutation	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09	554547	53217486	144804944	31	4796											
PSMD6	9861	bcgsc.ca	37	chr3	64008458	64008458	+	Silent	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caatcctcggtttgctcttgCcggattctgttccaaaagtc	7	14	8	12	2	2	0	0	0	2	0	6	1	4	1	3	2	2	3	3	2	3	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PSMD6	NM_001271779	exon2	c.G165A	p.R55R	CTCTTGCCGGATT	.	22	3	34	0	.	30	T	64008458	T	T	64008458	2	4	31	1	0	0	0	0	0	0	0	1	12751	754	26	3		3	PSMD6	3	64008458	Silent	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	10790972	64008458	134013972	32	4797											
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101572374	101572374	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtccagaatcacagttttGcccaaaccaaagcttagttt	12	12	7	10	0	1	1	1	0	0	1	2	1	2	1	3	1	3	3	3	1	4	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_031419	exon5	c.G1004T	p.C335F	AGTTTTGCCCAAA	.	41	21	85	0	.	.	T	101572374	G	T	101572374	3	4	31	1	0	0	0	0	1	0	0	0	10430	1319	46	3	1022	3	NFKBIZ	3	101572374	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	37563916	101572374	96450056	33	4798											
PVRL3	25945	hgsc.bcm.edu;bcgsc.ca	37	chr3	110852607	110852607	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caactttggcaacaattaagGatgacacaattgccacgatc	15	9	7	10	1	0	1	0	1	0	0	1	3	0	2	1	2	3	1	1	2	5	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_015480	exon6	c.G1195T	p.D399Y	ATTAAGGATGACA	.	62	4	88	0	.	.	T	110852607	G	T	110852607	3	4	31	1	0	0	0	0	1	0	0	0	12893	1174	41	3	1217	3	PVRL3	3	110852607	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	9280233	110852607	87169823	34	4799											
WDR52	55779	hgsc.bcm.edu	37	chr3	113010415	113010415	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atagcaaactcaaaggtctgCgggctgtatctctttctctc	9	13	8	11	1	4	0	1	0	3	0	7	0	4	0	0	2	3	3	0	2	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001164496	exon35	c.G5554A	p.A1852T	GGTCTGCGGGCTG	.	61	4	78	0	.	.	T	113010415	C	T	113010415	3	4	31	1	0	0	0	0	1	0	0	0	17364	768	27	1	14	1	WDR52	3	113010415	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	2157808	113010415	85012015	35	4800											
THPO	7066	hgsc.bcm.edu	37	chr3	184090560	184090560	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaatgtccggggctcctaggGtcctgcgtgagggtccagga	7	8	16	10	2	0	1	0	1	0	0	4	2	4	2	4	5	1	1	4	5	2	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	THPO,NS,carcinoma,0,1	THPO	NM_000460	exon6	c.C803A	p.T268N	CCTAGGGTCCTGC	.	49	2	33	0	.	0	T	184090560	G	T	184090560	3	4	31	1	0	0	0	0	1	0	0	0	15932	1261	44	3	262	3	THPO	3	184090560	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	71080145	184090560	13931870	36	4801											
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184091269	184091269	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	tgtccagaaagctgccccagGagggatgagaggcaagtggg	11	5	17	8	0	0	2	0	1	0	2	1	5	1	4	3	4	2	2	3	4	2	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001177598	exon5	c.C330T	p.L110L	CCCCAGGAGGGAT	.	48	19	41	0	.	.	A	184091269	G	A	184091269	2	1	31	1	0	0	0	0	0	0	0	1	15932	1161	41	3		3	THPO	3	184091269	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	709	184091269	13931161	37	4802											
MUC4	4585	hgsc.bcm.edu	37	chr3	195505863	195505863	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcGgtgacaggaagaggggtggt	9	8	21	3	1	0	3	0	2	0	1	1	6	0	6	0	7	1	1	0	7	2	0	rs113561118		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12588T	p.T4196T	AGTGTCGGTGACA	.	105	8	97	0	.	0	A	195505863	G	A	195505863	2	1	31	1	0	0	0	0	0	0	0	1	10026	1103	39	1		1	MUC4	3	195505863	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	11414594	195505863	2516567	38	4803											
HTT	3064	hgsc.bcm.edu	37	chr4	3076696	3076696	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgccgccgccgccTcctcagcttcctcagccgcc	2	5	9	25	7	2	0	2	0	0	0	4	0	4	0	11	0	2	1	11	0	0	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002111	exon1	c.T144G	p.P48P	GCCGCCTCCTCAG	.	14	6	6	0	.	.	G	3076696	T	G	3076696	2	3	31	1	0	0	0	0	0	0	0	1	7501	1538	54	4		4	HTT	4	3076696	Silent	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09		3076696	188077580	39	4804											
OTOP1	133060	hgsc.bcm.edu	37	chr4	4204211	4204211	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccagagtgatgagccGttccttgtgctcattgagtt	10	12	10	9	1	1	4	1	3	0	1	2	4	2	4	3	0	3	3	3	0	2	4	rs200612216		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	OTOP1,NS,carcinoma,0,3	OTOP1	NM_177998	exon4	c.C694T	p.R232W	TGAGCCGTTCCTT	.	50	2	39	0	.	0	A	4204211	G	A	4204211	3	1	31	1	0	0	0	0	1	0	0	0	11352	1144	40	1	1156	1	OTOP1	4	4204211	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1127515	4204211	186950065	40	4805											
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	4304317	4304317	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cctctacagaccttaccacgGtagagagccagccttgtgcc	9	8	9	15	1	1	2	0	0	1	2	1	3	1	2	6	1	5	1	6	1	3	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145291	exon3	c.G754T	p.V252L	ACCACGGTAGAGA	.	32	5	17	0	.	.	T	4304317	G	T	4304317	3	4	31	1	0	0	0	0	1	0	0	0	17609	1261	44	3	760	3	ZBTB49	4	4304317	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	100106	4304317	186849959	41	4806											
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	20535338	20535338	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attggaaagcctcaaaacttTgtaagtatttgtacttgcat	13	15	7	6	0	1	0	1	0	0	0	1	1	1	1	1	1	4	4	1	1	6	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004787	exon18	c.T1832C	p.L611S	AAACTTTGTAAGT	.	144	18	123	0	.	.	C	20535338	T	C	20535338	3	2	31	1	0	0	0	0	1	0	0	0	14794	1826	63	4	1902	4	SLIT2	4	20535338	Missense_Mutation	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	16231021	20535338	170618938	42	4807											
SPATA18	132671	hgsc.bcm.edu	37	chr4	52945942	52945942	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccatgaatgtcaatcccaaGatttcattccctcctgtcgt	9	13	6	13	1	2	2	2	1	0	1	6	2	5	2	4	0	0	0	4	0	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SPATA18_ENST00000295213,NS,carcinoma,0,4	SPATA18_ENST00000295213	NM_145263	exon9	c.G1212T	p.K404N	TCCCAAGATTTCA	.	60	3	65	1	.	0	T	52945942	G	T	52945942	3	4	31	1	0	0	0	0	1	0	0	0	15059	933	33	3	1246	3	SPATA18	4	52945942	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	32410604	52945942	138208334	43	4808											
PF4V1	5197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	74719786	74719786	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	atgggaggaaaatttgcttgGatctgcaagccctgctgtac	10	11	12	8	0	1	0	0	0	1	0	1	3	1	3	1	3	5	4	1	3	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002620	exon3	c.G262A	p.D88N	TGCTTGGATCTGC	.	26	20	64	0	.	.	A	74719786	G	A	74719786	3	1	31	1	0	0	0	0	1	0	0	0	11801	1174	41	3	272	3	PF4V1	4	74719786	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	21773844	74719786	116434490	44	4809											
CAMK2D	817	broad.mit.edu	37	chr4	114435036	114435036	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagcagtctacagtctcctGtctgtgcatcatggaagcaa	11	10	9	11	0	4	0	1	0	3	0	5	1	4	1	1	1	4	3	1	1	4	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CAMK2D	NM_172128	exon11	c.C853A	p.Q285K	TCTCCTGTCTGTG	.	48	3	98	0	.	55	T	114435036	G	T	114435036	3	4	31	1	0	0	0	0	1	0	0	0	2619	1386	48	3	773	3	CAMK2D	4	114435036	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	39715250	114435036	76719240	45	4810											
CAMK2D	817	hgsc.bcm.edu	37	chr4	114680566	114680566	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcttctcaccactgagaatgCccccctggaaaccaataatt	12	10	5	14	0	2	1	1	1	2	1	3	3	2	2	5	1	2	0	5	1	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_172128	exon2	c.G70A	p.A24T	AGAATGCCCCCCT	.	95	2	178	0	.	.	T	114680566	C	T	114680566	3	4	31	1	0	0	0	0	1	0	0	0	2619	739	26	3	1592	3	CAMK2D	4	114680566	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	245530	114680566	76473710	46	4811											
QRFPR	84109	hgsc.bcm.edu	37	chr4	122301568	122301568	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagataaagatgttggtgaCggtgcgcatggccttgctgc	8	10	15	8	2	0	3	0	1	0	2	0	3	0	3	1	3	3	4	1	3	2	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	QRFPR,colon,carcinoma,0,1	QRFPR	NM_198179	exon1	c.G235A	p.V79I	TGGTGACGGTGCG	.	21	2	42	0	.	0	T	122301568	C	T	122301568	3	4	31	1	0	0	0	0	1	0	0	0	12930	536	19	1	1084	1	QRFPR	4	122301568	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	7621002	122301568	68852708	47	4812											
KIAA1109	84162	hgsc.bcm.edu	37	chr4	123107280	123107280	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctttatggacgccttcaaGagttgtttggtttggagcca	8	15	11	7	1	2	1	1	0	1	1	2	3	2	3	2	3	1	3	2	3	2	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	KIAA1109,NS,carcinoma,0,1	KIAA1109	NM_015312	exon5	c.G448T	p.E150X	CTTCAAGAGTTGT	.	67	2	146	0	.	0	T	123107280	G	T	123107280	4	4	31	1	0	0	0	0	0	1	0	0	8250	943	33	3	466	3	KIAA1109	4	123107280	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	805712	123107280	68046996	48	4813											
CTNND2	1501	hgsc.bcm.edu	37	chr5	11199612	11199612	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgcggagtaacctcacCagtgctgggatgccaccaca	9	8	11	13	1	2	0	1	0	1	0	2	2	2	2	4	2	4	2	4	2	1	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CTNND2,NS,carcinoma,0,1	CTNND2	NM_001332	exon11	c.G1923A	p.L641L	CCTCACCAGTGCT	.	72	3	76	0	.	0	T	11199612	C	T	11199612	2	4	31	1	0	0	0	0	0	0	0	1	4044	581	21	3		3	CTNND2	5	11199612	Silent	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09		11199612	169715648	49	4814											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	71491937	71491937	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tggagcccgtcgagaagcagGgagtagacgacattgaaaaa	15	5	14	7	3	0	3	0	1	0	2	1	7	0	5	1	2	2	2	1	2	4	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_005909	exon5	c.G2755T	p.G919X	AAGCAGGGAGTAG	.	53	16	43	0	.	.	T	71491937	G	T	71491937	4	4	31	1	0	0	0	0	0	1	0	0	9278	1233	43	3	2773	3	MAP1B	5	71491937	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	60292325	71491937	109423323	50	4815											
KIF3A	11127	hgsc.bcm.edu	37	chr5	132070088	132070088	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcctgtttgtagcacattGatttctctctctcattgagg	7	16	8	10	0	3	2	1	2	2	0	5	2	3	2	1	1	2	3	1	1	1	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007054	exon2	c.C89A	p.S30X	CACATTGATTTCT	.	81	3	75	0	.	.	T	132070088	G	T	132070088	4	4	31	1	0	0	0	0	0	1	0	0	8342	1294	45	3	2074	3	KIF3A	5	132070088	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	60578151	132070088	48845172	51	4816											
CATSPER3	347732	broad.mit.edu;bcgsc.ca	37	chr5	134305631	134305631	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cattcaactttttgacaggaGgaacgatgatgaatgtcggg	12	11	12	6	2	1	3	1	3	0	0	2	6	1	5	0	3	2	0	0	3	3	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CATSPER3	NM_178019	exon2	c.G101T	p.R34M	ACAGGAGGAACGA	.	68	4	66	0	.	38	T	134305631	G	T	134305631	3	4	31	1	0	0	0	0	1	0	0	0	2707	1000	35	3	107	3	CATSPER3	5	134305631	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	2235543	134305631	46609629	52	4817											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169145773	169145773	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	atgtgttcaagttcattgttCggtcgaggacattattttca	9	17	9	6	2	3	0	3	0	0	0	5	2	3	1	0	2	0	3	0	2	2	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	DOCK2,NS,malignant_melanoma,0,1	DOCK2	NM_004946	exon22	c.C2245T	p.R749W	ATTGTTCGGTCGA	.	107	12	103	0	.	0	T	169145773	C	T	169145773	3	4	31	1	0	0	0	0	1	0	0	0	4714	875	31	1	2331	1	DOCK2	5	169145773	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	34840142	169145773	11769487	53	4818											
RUFY1	80230	broad.mit.edu	37	chr5	178977642	178977642	+	Frame_Shift_Del	DEL	G	G	-																															ccggagctggagccggggccGgggcccgggtcagcgcttga																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	RUFY1	NM_025158	exon1	c.72delG	p.P24fs	GGGGCCGGGGCCC	.	6	1	4	0	.	101	-	178977642	G	-	178977642	7	5	31	1	0	1	0	1	0	0	0	0	13790	1103	39	0	74	0	RUFY1	5	178977642	Frame_Shift_Del	DEL	G	TCGA-ZH-A8Y4-01A-11D-A417-09	9831869	178977642	1937618	54	4819											
PGBD1	84547	broad.mit.edu	37	chr6	28251597	28251597	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cctctaagctcaacatgtatGaagctttgccaggccctgct	9	11	8	13	0	2	1	1	1	1	0	2	1	2	1	3	1	5	4	3	1	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PGBD1	NM_001184743	exon2	c.G7A	p.E3K	ATGTATGAAGCTT	.	31	3	31	0	.	106	A	28251597	G	A	28251597	3	1	31	1	0	0	0	0	1	0	0	0	11828	1291	45	3	9	3	PGBD1	6	28251597	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		28251597	142863470	55	4820											
KCNK16	83795	hgsc.bcm.edu	37	chr6	39285610	39285610	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctttcaatggcggccagatgGgcacgcagccctgtgcccag	7	7	13	14	2	1	1	1	0	0	1	1	1	1	1	3	3	2	2	3	3	1	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001135106	exon3	c.C447A	p.A149A	CAGATGGGCACGC	.	75	4	83	0	.	.	T	39285610	G	T	39285610	2	4	31	1	0	0	0	0	0	0	0	1	8107	1219	43	3		3	KCNK16	6	39285610	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	11034013	39285610	131829457	56	4821											
GPR110	266977	hgsc.bcm.edu	37	chr6	46977650	46977650	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaatagttttgaataaccgtGgatatcacaggtccattgac	13	12	9	7	1	1	2	1	2	0	0	2	4	2	3	2	2	1	1	2	2	5	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_153840	exon11	c.C1521A	p.S507S	AACCGTGGATATC	.	78	4	71	0	.	.	T	46977650	G	T	46977650	2	4	31	1	0	0	0	0	0	0	0	1	6667	1335	47	3		3	GPR110	6	46977650	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	7692040	46977650	124137417	57	4822											
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	chr6	90362819	90362819	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgggctttgtctgttctgggGtcttggtcttcctctgtttt	0	21	12	8	0	5	0	0	0	5	0	6	0	6	0	1	4	0	3	1	4	0	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014611	exon94	c.C15717A	p.D5239E	TCTGGGGTCTTGG	.	51	4	88	0	.	.	T	90362819	G	T	90362819	3	4	31	1	0	0	0	0	1	0	0	0	9465	1252	44	3	1109	3	MDN1	6	90362819	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	43385169	90362819	80752248	58	4823											
C6orf170	221322	hgsc.bcm.edu	37	chr6	121481233	121481233	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgatgaaaacattggccaaGgatatggattatcactctaa	16	11	8	6	0	2	2	1	2	1	0	2	4	2	4	1	3	1	0	1	3	6	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	C6orf170,NS,carcinoma,0,1	C6orf170	NM_152730	exon24	c.C2696A	p.P899H	GGCCAAGGATATG	.	44	2	35	0	.	0	T	121481233	G	T	121481233	3	4	31	1	0	0	0	0	1	0	0	0	2358	1000	35	3	1113	3	C6orf170	6	121481233	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	31118414	121481233	49633834	59	4824											
TPD52L1	7164	bcgsc.ca	37	chr6	125584047	125584047	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cctcagctccacggcccatgCcagtgcccagagcttggcag	7	6	11	17	1	1	1	1	0	0	1	2	1	2	1	5	2	4	3	5	2	0	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TPD52L1	NM_003287	exon7	c.C554T	p.A185V	CCCATGCCAGTGC	.	20	3	28	0	.	14	T	125584047	T	T	125584047	3	4	31	1	0	0	0	0	1	0	0	0	16459	739	26	3	580	3	TPD52L1	6	125584047	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	4102814	125584047	45531020	60	4825											
SYNE1	23345	hgsc.bcm.edu	37	chr6	152737535	152737535	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tatttacctctgctgaagagCttggcgggtaggttctttca	7	15	11	8	1	3	2	1	1	2	1	3	2	3	2	1	3	3	4	1	3	4	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SYNE1_ENST00000265368,NS,carcinoma,0,2	SYNE1_ENST00000265368	NM_033071	exon41	c.G6058T	p.A2020S	GAAGAGCTTGGCG	.	36	2	39	0	.	0	A	152737535	C	A	152737535	3	1	31	1	0	0	0	0	1	0	0	0	15502	797	28	3	20853	3	SYNE1	6	152737535	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	27153488	152737535	18377532	61	4826											
TTYH3	80727	bcgsc.ca	37	chr7	2685484	2685484	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	accagacctgaaaacctcagGactacagctggggtggggga	12	5	14	10	0	1	2	1	1	0	1	1	4	1	4	3	5	3	1	3	5	3	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TTYH3	.	.	.	.	CCTCAGGACTACA	.	42	4	52	0	.	36	T	2685484	T	T	2685484	3	4	31	1	0	0	0	0	1	0	0	0	16803	1189	41	3		3	TTYH3	7	2685484	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		2685484	156453179	62	4827											
GRM3	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	86416121	86416121	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagttcgaccgctacttccAgagcctcaacccctacaaca	11	7	5	18	2	1	1	1	0	0	1	3	2	2	1	6	0	5	2	6	0	4	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	GRM3	NM_000840	exon3	c.A1013G	p.Q338R	ACTTCCAGAGCCT	.	43	4	26	0	.	237	G	86416121	A	G	86416121	3	3	31	1	0	0	0	0	1	0	0	0	6839	188	7	4	1019	4	GRM3	7	86416121	Missense_Mutation	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09	83730637	86416121	72722542	63	4828											
CCDC132	55610	hgsc.bcm.edu	37	chr7	92970748	92970748	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtattttcaggaagtttcaGctgatcctactgccacactc	9	14	7	11	0	2	1	2	1	0	0	4	2	3	2	2	1	3	3	2	1	3	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017667	exon23	c.G2068T	p.A690S	GTTTCAGCTGATC	.	98	4	82	0	.	.	T	92970748	G	T	92970748	3	4	31	1	0	0	0	0	1	0	0	0	2785	971	34	3	2200	3	CCDC132	7	92970748	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	6554627	92970748	66167915	64	4829											
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	98636132	98636132	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gaaggtgtggtccagtacagGcgtgatgtcgttctctctgt	6	13	14	8	2	2	1	0	1	2	0	5	2	3	1	1	3	1	2	1	3	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020429	exon15	c.C1645A	p.P549T	GTACAGGCGTGAT	.	42	4	37	0	.	.	T	98636132	G	T	98636132	3	4	31	1	0	0	0	0	1	0	0	0	14873	1203	42	3	648	3	SMURF1	7	98636132	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	5665384	98636132	60502531	65	4830											
FOXP2	93986	broad.mit.edu	37	chr7	114269938	114269949	+	In_Frame_Del	DEL	CAGCAGCAACAA	CAGCAGCAACAA	-																															agcagcagcagcaacagcagCagcagcaacaacagcagcaa																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	FOXP2,NS,carcinoma,0,1	FOXP2	NM_001172767	exon5	c.550_561del	p.184_187del	CAGCAGCAGCAGC	.	51	4	53	0	.	133	-	114269949	CAGCAGCAACAA	-	114269938	7	5	31	1	0	1	0	1	0	0	0	0	6061	711	25	0	623	0	FOXP2	7	114269938	In_Frame_Del	DEL	CAGCAGCAACAA	TCGA-ZH-A8Y4-01A-11D-A417-09	15633806	114269938	44868725	66	4831											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	132193245	132193245	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gctggagagcttgtaaatccGattgacggcccccaagtaaa	12	8	11	10	2	0	2	0	1	0	1	1	4	1	2	3	2	1	4	3	2	5	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001105543	exon2	c.C208T	p.R70W	AAATCCGATTGAC	.	98	41	89	0	.	.	A	132193245	G	A	132193245	3	1	31	1	0	0	0	0	1	0	0	0	12170	1057	37	1	5914	1	PLXNA4	7	132193245	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	17923307	132193245	26945418	67	4832											
ZYX	7791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143080207	143080207	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gttttctccagtgactcctaAgtttactcctgtggcttcca	6	16	7	12	0	1	1	0	1	1	0	5	1	4	1	4	1	1	3	4	1	2	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_003461	exon5	c.A815C	p.K272T	CTCCTAAGTTTAC	.	76	26	76	0	.	.	C	143080207	A	C	143080207	3	2	31	1	0	0	0	0	1	0	0	0	18294	72	3	4	829	4	ZYX	7	143080207	Missense_Mutation	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09	10886962	143080207	16058456	68	4833											
OR6B1	135946	hgsc.bcm.edu;bcgsc.ca	37	chr7	143701151	143701151	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggattccctgggagctTgagtatgcgggcagccatgt	6	10	17	8	1	0	1	0	1	0	0	1	3	1	3	2	4	3	3	2	4	1	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001005281	exon1	c.T62C	p.L21S	GGAGCTTGAGTAT	.	54	4	63	0	.	.	C	143701151	T	C	143701151	3	2	31	1	0	0	0	0	1	0	0	0	11234	1821	63	4	64	4	OR6B1	7	143701151	Missense_Mutation	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	620944	143701151	15437512	69	4834											
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	148769283	148769283	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggttgttctcccaacagcttTccccgcagacaggccaaggg	8	8	11	14	1	1	1	0	0	1	1	3	1	2	1	4	3	2	4	4	3	2	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_152411	exon4	c.A581C	p.E194A	CAGCTTTCCCCGC	.	70	29	61	0	.	.	G	148769283	T	G	148769283	3	3	31	1	0	0	0	0	1	0	0	0	18207	1783	62	4	1771	4	ZNF786	7	148769283	Missense_Mutation	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	5068132	148769283	10369380	70	4835											
ZNF467	168544	broad.mit.edu	37	chr7	149462038	149462038	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgaagctgcgggcgcagacgGcgcaggcgtgggggcggctg	5	4	22	10	6	0	2	0	1	0	1	0	2	0	2	0	6	2	4	0	6	1	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	ZNF467	NM_207336	exon5	c.C1553A	p.A518D	CAGACGGCGCAGG	.	43	3	40	0	.	50	T	149462038	G	T	149462038	3	4	31	1	0	0	0	0	1	0	0	0	17984	1203	42	3	238	3	ZNF467	7	149462038	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	692755	149462038	9676625	71	4836											
GIMAP2	26157	hgsc.bcm.edu;broad.mit.edu	37	chr7	150389906	150389906	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtggcagcatgtggtgggCgaatctgtgcctttaataac	8	12	14	7	1	1	0	0	0	1	0	1	1	1	0	1	4	3	2	1	4	3	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	GIMAP2,colon,carcinoma,0,2	GIMAP2	NM_015660	exon3	c.C532T	p.R178X	GGTGGGCGAATCT	.	47	3	70	0	.	0	T	150389906	C	T	150389906	4	4	31	1	0	0	0	0	0	1	0	0	6422	760	27	1	538	1	GIMAP2	7	150389906	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	927868	150389906	8748757	72	4837											
PAXIP1	22976	hgsc.bcm.edu;bcgsc.ca	37	chr7	154760124	154760124	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	attactaactctccactgctGgatcatgtccaaaaagctga	13	11	6	11	0	2	1	1	1	1	0	4	2	3	2	2	1	4	2	2	1	4	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007349	exon7	c.C1787T	p.P596L	ACTGCTGGATCAT	.	42	4	30	0	.	.	A	154760124	G	A	154760124	3	1	31	1	0	0	0	0	1	0	0	0	11534	1348	47	3	1482	3	PAXIP1	7	154760124	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	4370218	154760124	4378539	73	4838											
CDH17	1015	hgsc.bcm.edu;broad.mit.edu	37	chr8	95186446	95186446	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctggccattgggagtggccGgatcatccaggtctgtggca	6	9	16	10	1	2	0	1	0	1	0	3	2	3	2	3	6	0	2	3	6	0	1	rs376397791		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CDH17,NS,carcinoma,0,2	CDH17	NM_004063	exon6	c.C467T	p.P156L	GTGGCCGGATCAT	.	75	5	65	1	.	0	A	95186446	G	A	95186446	3	1	31	1	0	0	0	0	1	0	0	0	3124	1116	39	1	2083	1	CDH17	8	95186446	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		95186446	51177576	74	4839											
CNTFR	1271	hgsc.bcm.edu	37	chr9	34557626	34557626	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggtggagaacaggtgcatgtAgcgaatgtggcagcggttct	9	9	17	6	2	1	1	0	0	1	1	1	3	1	1	0	5	4	4	0	5	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CNTFR,colon,carcinoma,0,2	CNTFR	NM_147164	exon6	c.T502C	p.Y168H	GCATGTAGCGAAT	.	29	3	76	0	.	0	G	34557626	A	G	34557626	3	3	31	1	0	0	0	0	1	0	0	0	3661	420	15	4	636	4	CNTFR	9	34557626	Missense_Mutation	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09		34557626	106655805	75	4840											
REXO4	57109	hgsc.bcm.edu	37	chr9	136279959	136279959	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatcttggaacctgaaGgaacagagcccctgctggcc	9	8	11	13	0	1	2	0	1	1	1	2	4	2	4	5	3	4	1	5	3	3	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	REXO4,mucosal,malignant_melanoma,0,2	REXO4	NM_020385	exon2	c.C398A	p.P133H	CCTGAAGGAACAG	.	44	3	69	0	.	0	T	136279959	G	T	136279959	3	4	31	1	0	0	0	0	1	0	0	0	13295	1000	35	3	898	3	REXO4	9	136279959	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	101722333	136279959	4933472	76	4841											
SFMBT2	57713	bcgsc.ca	37	chr10	7212892	7212892	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acgcggcaaccaccgtacctGctcctgaaatatcttggcca	10	8	8	15	3	1	1	0	1	1	0	2	1	2	1	5	2	3	3	5	2	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	SFMBT2	NM_001029880	exon20	c.C2542A	p.Q848K	GTACCTGCTCCTG	.	42	4	63	0	.	209	T	7212892	T	T	7212892	3	4	31	1	0	0	0	0	1	0	0	0	14212	1328	46	3	150	3	SFMBT2	10	7212892	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		7212892	128321855	77	4842											
ZNF485	220992	hgsc.bcm.edu	37	chr10	44104181	44104181	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagaactatgggaatctggtGtctgtgggtgaggatggctt	8	12	17	4	0	2	2	0	1	2	1	2	5	2	4	0	5	1	1	0	5	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145312	exon3	c.G144T	p.V48V	TCTGGTGTCTGTG	.	84	4	81	0	.	.	T	44104181	G	T	44104181	2	4	31	1	0	0	0	0	0	0	0	1	17995	1364	48	3		3	ZNF485	10	44104181	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	36891289	44104181	91430566	78	4843											
PCDH15	65217	hgsc.bcm.edu	37	chr10	55566478	55566478	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcatggactcctgttcaactGtgcttttcagcctgttcctt	5	17	7	12	0	3	0	3	0	0	0	5	1	5	1	3	1	3	3	3	1	1	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PCDH15_ENST00000414778,NS,carcinoma,0,1	PCDH15_ENST00000414778	.	p.T1639K	.	.	TCAACTGTGCTTT	.	30	2	51	0	.	0	T	55566478	G	T	55566478	3	4	31	1	0	0	0	0	1	0	0	0	11558	1377	48	3	142	3	PCDH15	10	55566478	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	11462297	55566478	79968269	79	4844											
CTNNA3	29119	hgsc.bcm.edu	37	chr10	68381522	68381522	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccatcttcatttgttgacatGgaacaagcaagatttgccac	12	12	7	10	0	2	2	1	1	1	1	2	3	2	3	2	1	3	2	2	1	3	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CTNNA3_ENST00000433211,NS,carcinoma,0,2	CTNNA3_ENST00000433211	NM_013266	exon10	c.C1302A	p.S434S	TGACATGGAACAA	.	70	2	60	0	.	0	T	68381522	G	T	68381522	2	4	31	1	0	0	0	0	0	0	0	1	4038	1335	47	3		3	CTNNA3	10	68381522	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	12815044	68381522	67153225	80	4845											
VPS26A	9559	hgsc.bcm.edu;bcgsc.ca	37	chr10	70928304	70928304	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acccaactccaacaatgagaGatgtgaacaaaaaattttca	19	8	5	9	0	1	3	1	2	0	1	2	4	2	3	2	0	3	0	2	0	7	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004896	exon8	c.G787T	p.D263Y	ATGAGAGATGTGA	.	53	4	55	0	.	.	T	70928304	G	T	70928304	3	4	31	1	0	0	0	0	1	0	0	0	17257	942	33	3	817	3	VPS26A	10	70928304	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	2546782	70928304	64606443	81	4846											
FAM35A	54537	hgsc.bcm.edu	37	chr10	88946934	88946934	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gattcttctcaacatttctgCagactgcctcaacagagtga	11	12	7	11	0	4	3	2	1	3	2	5	4	4	3	1	0	4	1	1	0	2	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_019054	exon8	c.C2285T	p.A762V	TTTCTGCAGACTG	.	80	3	104	0	.	.	T	88946934	C	T	88946934	3	4	31	1	0	0	0	0	1	0	0	0	5589	710	25	3	2307	3	FAM35A	10	88946934	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	18018630	88946934	46587813	82	4847											
MUC2	4583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1096456	1096456	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acaacttcggagtttacatcGacaactaccactgcgatccc	12	9	6	14	3	0	0	0	0	0	0	3	3	1	1	2	1	5	1	2	1	4	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2	NM_002457	exon35	c.G6469A	p.D2157N	TACATCGACAACT	.	26	4	22	0	.	614	A	1096456	G	A	1096456	3	1	31	1	0	0	0	0	1	0	0	0	10023	1058	37	1	6607	1	MUC2	11	1096456	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		1096456	133910060	83	4848											
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu	37	chr11	3249154	3249154	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acggcccccagctcagcctcGtctcccagcgctcgctggag	5	6	11	19	4	2	0	1	0	1	0	5	1	2	1	4	2	3	3	4	2	0	0	rs373696773		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001039165	exon2	c.C876T	p.D292D	AGCCTCGTCTCCC	.	8	6	13	0	.	.	A	3249154	G	A	3249154	2	1	31	1	0	0	0	0	0	0	0	1	9813	1136	40	1		1	MRGPRE	11	3249154	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	2152698	3249154	131757362	84	4849											
OVCH2	341277	broad.mit.edu	37	chr11	7716913	7716913	+	RNA	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttagagccaataagaatggaTgaggccgggcgcggtggctc	10	7	16	8	3	0	3	0	1	0	2	1	4	0	4	2	5	1	1	2	5	4	2	rs372744251		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	OVCH2	.	.	.	.	AATGGATGAGGCC	.	26	2	36	1	.	47	A	7716913	T	A	7716913	1	1	31	0	1	0	0	0	0	0	0	0	11371	1479	51	5		5	OVCH2	11	7716913	RNA	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	4467759	7716913	127289603	85	4850											
DEPDC7	91614	hgsc.bcm.edu	37	chr11	33054930	33054930	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attcaaaactttctgccaaaGagaagaaaaaattgctaggt	18	10	7	6	0	2	2	1	0	1	2	2	3	2	2	1	1	3	1	1	1	8	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001077242	exon9	c.G1465T	p.E489X	GCCAAAGAGAAGA	.	90	4	73	0	.	.	T	33054930	G	T	33054930	4	4	31	1	0	0	0	0	0	1	0	0	4472	943	33	3	1549	3	DEPDC7	11	33054930	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	25338017	33054930	101951586	86	4851											
TTC17	55761	hgsc.bcm.edu	37	chr11	43465625	43465625	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gattacattccaggtcaaacGtgtaaagaaacccaaaggag	17	7	9	8	1	1	1	1	0	0	1	2	3	2	2	2	2	3	1	2	2	6	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TTC17,right_upper_lobe,carcinoma,0,1	TTC17	NM_018259	exon18	c.G2531A	p.R844H	TCAAACGTGTAAA	.	47	2	53	0	.	0	A	43465625	G	A	43465625	3	1	31	1	0	0	0	0	1	0	0	0	16746	1145	40	1	2601	1	TTC17	11	43465625	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	10410695	43465625	91540891	87	4852											
B3GNT6	192134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76751719	76751719	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcgctgcacagccccgCgctcagctgtgaccggggac	7	4	15	15	4	1	1	1	1	0	0	1	3	1	2	3	3	3	4	3	3	1	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_138706	exon5	c.C1121T	p.A374V	GCCCCGCGCTCAG	.	45	17	45	0	.	.	T	76751719	C	T	76751719	3	4	31	1	0	0	0	0	1	0	0	0	1259	768	27	1	1126	1	B3GNT6	11	76751719	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	33286094	76751719	58254797	88	4853											
OR8B3	390271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	124266860	124266860	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	catggtgaccttatacagcaAtggattacagatggccacat	13	10	9	9	0	0	2	0	1	0	1	0	3	0	3	2	3	3	1	2	3	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001005467	exon1	c.T388C	p.L130L	ACAGCAATGGATT	.	42	24	54	0	.	.	G	124266860	A	G	124266860	2	3	31	1	0	0	0	0	0	0	0	1	11275	98	4	4		4	OR8B3	11	124266860	Silent	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09	47515141	124266860	10739656	89	4854											
ACAD8	27034	hgsc.bcm.edu	37	chr11	134128487	134128487	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccgctctgtaccatggaGaagtttgcttcctactgcct	7	12	8	14	1	1	1	0	0	1	1	2	2	2	1	5	1	4	4	5	1	3	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ACAD8,rectum,carcinoma,0,1	ACAD8	NM_014384	exon4	c.G459T	p.E153D	CATGGAGAAGTTT	.	18	2	61	0	.	0	T	134128487	G	T	134128487	3	4	31	1	0	0	0	0	1	0	0	0	110	933	33	3	473	3	ACAD8	11	134128487	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	9861627	134128487	878029	90	4855											
KRT3	3850	hgsc.bcm.edu	37	chr12	53183978	53183978	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	accgctgaaaccgctgctgcCgccgccaaatccaccgccga	9	4	9	19	6	0	1	0	1	0	0	1	2	1	1	8	0	3	3	8	0	2	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	KRT3,colon,carcinoma,0,1	KRT3	NM_057088	exon9	c.G1735A	p.G579S	TGCTGCCGCCGCC	.	47	5	21	1	.	0	T	53183978	C	T	53183978	3	4	31	1	0	0	0	0	1	0	0	0	8509	652	23	1	155	1	KRT3	12	53183978	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09		53183978	80667917	91	4856											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	63042370	63042370	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccgccatcctctgtccttcaGcacaccccgggcacgcatca	7	7	7	20	3	3	0	2	0	1	0	5	0	5	0	6	1	1	3	6	1	0	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020700	exon10	c.C1444T	p.L482L	CCTTCAGCACACC	.	58	4	35	0	.	.	A	63042370	G	A	63042370	2	1	31	1	0	0	0	0	0	0	0	1	12390	962	34	3		3	PPM1H	12	63042370	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	9858392	63042370	70809525	92	4857											
ABCC4	10257	hgsc.bcm.edu;bcgsc.ca	37	chr13	95816668	95816668	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggagaataaggaaaatgaaGacaatccagtgagcaccagc	19	4	11	7	0	0	4	0	2	0	2	1	6	1	5	2	2	2	1	2	2	6	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_005845	exon16	c.C2139A	p.V713V	AATGAAGACAATC	.	91	4	117	0	.	.	T	95816668	G	T	95816668	2	4	31	1	0	0	0	0	0	0	0	1	55	929	33	3		3	ABCC4	13	95816668	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		95816668	19353210	93	4858											
PROZ	8858	hgsc.bcm.edu	37	chr13	113814370	113814370	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aaacgacgttctggtgaggtGgaagcgtgcgggctcctatc	8	9	15	9	4	1	1	0	1	1	0	3	3	2	2	1	4	3	2	1	4	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PROZ,ear,carcinoma,0,1	PROZ	NM_001256134	exon3	c.G179T	p.W60L	TGAGGTGGAAGCG	.	43	2	36	0	.	0	T	113814370	G	T	113814370	3	4	31	1	0	0	0	0	1	0	0	0	12614	1357	47	3	119	3	PROZ	13	113814370	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	17997702	113814370	1355508	94	4859											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68275965	68275965	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tggaggtcttctgacaataaAagaaactcaagctttctccg	13	11	8	9	1	4	2	1	1	3	1	5	3	4	3	1	2	2	1	1	2	5	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_015346	exon4	c.T315C	p.L105L	CAATAAAAGAAAC	.	44	36	77	0	.	.	G	68275965	A	G	68275965	2	3	31	1	0	0	0	0	0	0	0	1	17726	1	1	4		4	ZFYVE26	14	68275965	Silent	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09		68275965	39073575	95	4860											
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73576153	73576153	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcttgaggaaatcaggcagCgccttctggcagaagggcat	11	7	14	9	1	2	2	1	1	1	1	2	3	2	3	1	4	2	4	1	4	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_021239	exon14	c.C1645T	p.R549C	AGGCAGCGCCTTC	.	25	19	54	0	.	.	T	73576153	C	T	73576153	3	4	31	1	0	0	0	0	1	0	0	0	13177	768	27	1	1695	1	RBM25	14	73576153	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	5300188	73576153	33773387	96	4861											
C14orf159	80017	hgsc.bcm.edu	37	chr14	91666203	91666203	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacttggttgaccccattgaCgatctttttcttgctgcgaa	7	15	8	11	2	2	2	0	2	2	0	2	4	2	2	2	1	2	2	2	1	1	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	C14orf159,colon,carcinoma,0,2	C14orf159	NM_001102368	exon11	c.C1398T	p.D466D	CATTGACGATCTT	.	33	2	79	0	.	0	T	91666203	C	T	91666203	2	4	31	1	0	0	0	0	0	0	0	1	1761	535	19	1		1	C14orf159	14	91666203	Silent	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	18090050	91666203	15683337	97	4862											
PPP1R13B	23368	hgsc.bcm.edu	37	chr14	104202439	104202439	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcctcaggatggtgagggcGtccccttcgtggaaggacag	7	7	16	11	3	1	1	1	1	0	0	3	4	2	4	3	5	0	0	3	5	1	1	rs371359449	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PPP1R13B,colon,carcinoma,0,1	PPP1R13B	NM_015316	exon16	c.C3132A	p.D1044E	GAGGGCGTCCCCT	.	47	2	58	0	.	0	T	104202439	G	T	104202439	3	4	31	1	0	0	0	0	1	0	0	0	12406	1136	40	2	148	2	PPP1R13B	14	104202439	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	12536236	104202439	3147101	98	4863											
RYR3	6263	hgsc.bcm.edu	37	chr15	34102761	34102761	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agacctccctcatcgtggctGcactcaagaaaatgctgccc	10	8	8	15	1	2	2	2	0	0	2	4	2	3	2	3	1	3	3	3	1	3	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	RYR3,NS,carcinoma,0,1	RYR3	NM_001036	exon71	c.G10108A	p.A3370T	GTGGCTGCACTCA	.	43	3	53	0	.	0	A	34102761	G	A	34102761	3	1	31	1	0	0	0	0	1	0	0	0	13822	1319	46	3	10390	3	RYR3	15	34102761	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		34102761	68428631	99	4864											
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49030571	49030571	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgctcagttttttgaaatCtgactttaatctatcagcct	10	17	5	9	0	4	2	2	2	2	0	4	2	4	2	1	0	2	2	1	0	3	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001194998	exon27	c.G5008T	p.D1670Y	TGAAATCTGACTT	.	101	22	118	0	.	.	A	49030571	C	A	49030571	3	1	31	1	0	0	0	0	1	0	0	0	3270	913	32	3	128	3	CEP152	15	49030571	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	14927810	49030571	53500821	100	4865											
KIF22	3835	hgsc.bcm.edu	37	chr16	29810382	29810382	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgattccgggtctctcccaGaagcccatcagtagctttgc	7	11	9	14	1	2	2	1	1	1	1	5	2	4	2	3	1	3	2	3	1	2	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007317	exon5	c.G636T	p.Q212H	CTCCCAGAAGCCC	.	97	4	97	0	.	.	T	29810382	G	T	29810382	3	4	31	1	0	0	0	0	1	0	0	0	8332	933	33	3	654	3	KIF22	16	29810382	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		29810382	60544371	101	4866											
MVP	9961	broad.mit.edu	37	chr16	29855899	29855899	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaggtgatgcctgcaaaGccatcgcatcccgggtgcgg	7	9	14	11	3	0	1	0	1	0	0	2	1	1	1	3	3	4	3	3	3	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	MVP	NM_017458	exon11	c.G1720T	p.A574S	TGCAAAGCCATCG	.	31	3	33	0	.	80	T	29855899	G	T	29855899	3	4	31	1	0	0	0	0	1	0	0	0	10044	971	34	3	1758	3	MVP	16	29855899	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	45517	29855899	60498854	102	4867											
ABCC12	94160	hgsc.bcm.edu	37	chr16	48138174	48138174	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcagaaagttctctgCgtgaaacggcagcctcacat	10	9	10	12	2	2	2	1	1	1	1	3	2	2	2	1	1	5	4	1	1	2	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ABCC12,rectum,carcinoma,0,1	ABCC12	NM_033226	exon20	c.G2779A	p.A927T	TCTCTGCGTGAAA	.	29	2	36	0	.	0	T	48138174	C	T	48138174	3	4	31	1	0	0	0	0	1	0	0	0	52	768	27	1	1340	1	ABCC12	16	48138174	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	18282275	48138174	42216579	103	4868											
SNX20	124460	hgsc.bcm.edu;bcgsc.ca	37	chr16	50707593	50707593	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcgcacagggccgggacggcGgccgcagggcagtgggcggt	5	2	22	12	6	0	0	0	0	0	0	0	1	0	1	2	7	0	3	2	7	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_182854	exon4	c.C675T	p.A225A	GACGGCGGCCGCA	.	14	9	24	0	.	.	A	50707593	G	A	50707593	2	1	31	1	0	0	0	0	0	0	0	1	14946	1103	39	1		1	SNX20	16	50707593	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	2569419	50707593	39647160	104	4869											
CNTNAP4	85445	hgsc.bcm.edu	37	chr16	76486447	76486447	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacaaccacaatctatgcccGtgacttttctgagctccagg	10	10	7	14	1	2	2	0	2	2	0	3	2	3	2	3	1	3	1	3	1	3	3	rs139625830	bycluster;alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CNTNAP4_ENST00000478060,colon,carcinoma,0,6	CNTNAP4_ENST00000478060	NM_138994	exon7	c.G895T	p.V299L	ATGCCCGTGACTT	.	40	2	67	0	.	0	T	76486447	G	T	76486447	3	4	31	1	0	0	0	0	1	0	0	0	3672	1145	40	2	1157	2	CNTNAP4	16	76486447	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	25778854	76486447	13868306	105	4870											
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36453189	36453189	+	Silent	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagggttctcttgtttatcgAggtttttgggctggtggttt	4	19	14	4	1	1	0	0	0	1	0	3	1	1	0	0	5	0	5	0	5	2	7	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032351	exon1	c.A40C	p.R14R	TTATCGAGGTTTT	.	98	20	80	0	.	.	C	36453189	A	C	36453189	2	2	31	1	0	0	0	0	0	0	0	1	9858	295	11	4		4	MRPL45	17	36453189	Silent	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09		36453189	44742021	106	4871											
DHX8	1659	hgsc.bcm.edu;bcgsc.ca	37	chr17	41597543	41597543	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	cctttgatttcatggatgccCcacctatggaaactttgatc	9	14	7	11	0	1	2	1	2	0	0	2	4	1	4	4	2	2	0	4	2	2	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004941	exon19	c.C2845T	p.P949S	GATGCCCCACCTA	.	74	4	60	0	.	.	T	41597543	C	T	41597543	3	4	31	1	0	0	0	0	1	0	0	0	4543	623	22	3	2919	3	DHX8	17	41597543	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	5144354	41597543	39597667	107	4872											
TTLL6	284076	hgsc.bcm.edu	37	chr17	46862554	46862554	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtaggatactaatgtcaatgGctggatgtactgagggagga	12	10	15	4	0	1	1	1	1	0	0	1	5	1	5	0	5	2	3	0	5	5	4	rs148198060	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TTLL6_ENST00000393382,NS,carcinoma,0,2	TTLL6_ENST00000393382	NM_001130918	exon13	c.C1771A	p.P591T	TCAATGGCTGGAT	.	47	2	45	0	.	0	T	46862554	G	T	46862554	3	4	31	1	0	0	0	0	1	0	0	0	16793	1203	42	3	916	3	TTLL6	17	46862554	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	5265011	46862554	34332656	108	4873											
SPATA20	64847	hgsc.bcm.edu	37	chr17	48629444	48629444	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagtgggctctgcggctgcaGgacacacaggacaagctctt	9	7	14	11	1	2	0	0	0	2	0	2	3	2	2	0	4	3	4	0	4	1	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_022827	exon14	c.G1860T	p.Q620H	GCTGCAGGACACA	.	94	4	92	0	.	.	T	48629444	G	T	48629444	3	4	31	1	0	0	0	0	1	0	0	0	15062	991	35	3	1914	3	SPATA20	17	48629444	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1766890	48629444	32565766	109	4874											
TLK2	11011	hgsc.bcm.edu	37	chr17	60679483	60679483	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttcgaagatcatggatgatGatagctacaattcagtggat	13	13	10	5	1	2	3	2	2	0	1	3	6	2	5	0	2	2	1	0	2	4	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TLK2_ENST00000346027,right_upper_lobe,carcinoma,0,3	TLK2_ENST00000346027	NM_006852	exon19	c.G1801T	p.D601Y	GATGATGATAGCT	.	62	3	58	0	.	0	T	60679483	G	T	60679483	3	4	31	1	0	0	0	0	1	0	0	0	16004	1290	45	3	1871	3	TLK2	17	60679483	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	12050039	60679483	20515727	110	4875											
WIPI1	55062	hgsc.bcm.edu	37	chr17	66417950	66417950	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttgcccttctgatttccacgGcacaagattatctaccaaaa	12	12	5	12	1	2	2	0	1	2	1	3	2	3	2	3	1	2	1	3	1	5	5	rs146678987	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	WIPI1,NS,carcinoma,0,1	WIPI1	NM_017983	exon13	c.C1305T	p.C435C	TCCACGGCACAAG	.	53	3	41	0	.	0	A	66417950	G	A	66417950	2	1	31	1	0	0	0	0	0	0	0	1	17430	1195	42	3		3	WIPI1	17	66417950	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	5738467	66417950	14777260	111	4876											
GPRC5C	55890	hgsc.bcm.edu	37	chr17	72436467	72436467	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	accctggttcggggcagtggCgagggcggccctcagggcaa	6	5	18	12	3	1	0	1	0	0	0	2	1	1	0	2	7	0	3	2	7	1	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	GPRC5C_ENST00000392629,caecum,carcinoma,0,2	GPRC5C_ENST00000392629	NM_022036	exon2	c.C687T	p.G229G	CAGTGGCGAGGGC	.	33	2	35	0	.	0	T	72436467	C	T	72436467	2	4	31	1	0	0	0	0	0	0	0	1	6767	755	27	1		1	GPRC5C	17	72436467	Silent	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	6018517	72436467	8758743	112	4877											
C17orf77	146723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72588674	72588674	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ccaggaggaacccaagcattGaggagctgcgggatctactg	11	6	14	10	1	1	1	0	1	1	0	1	5	1	5	2	4	5	2	2	4	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_152460	exon3	c.G489C	p.L163F	AGCATTGAGGAGC	.	57	14	36	0	.	.	C	72588674	G	C	72588674	3	2	31	1	0	0	0	0	1	0	0	0	1892	1281	45	5	491	5	C17orf77	17	72588674	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	152207	72588674	8606536	113	4878											
C18orf54	162681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	51888024	51888024	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttttcagcttttgaaaacCttgatcacaaaaagcactca	14	13	5	9	0	3	2	3	2	0	0	3	2	3	2	1	0	3	3	1	0	4	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_173529	exon3	c.C295A	p.L99I	GAAAACCTTGATC	.	77	21	113	0	.	.	A	51888024	C	A	51888024	3	1	31	1	0	0	0	0	1	0	0	0	1915	681	24	3	301	3	C18orf54	18	51888024	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09		51888024	26189224	114	4879											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	72776395	72776396	+	Frame_Shift_Del	DEL	AG	AG	-																															cggcggcaattcagagccaaAgagaaagcagcgaactccag																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017757	exon8	c.6717_6718del	p.2239_2240del	AGCCAAAGAGAAA	.	53	15	66	0	.	.	-	72776396	AG	-	72776395	7	5	31	1	0	1	0	1	0	0	0	0	17944	64	3	0	6878	0	ZNF407	18	72776395	Frame_Shift_Del	DEL	AG	TCGA-ZH-A8Y4-01A-11D-A417-09	20888371	72776395	5300853	115	4880											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1052002	1052002	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagctgctgggagaccgtgtGgccgtggtggcaggtggccg	4	7	21	9	3	0	1	0	0	0	1	0	3	0	1	3	6	2	3	3	6	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_019112	exon22	c.G3024A	p.V1008V	CCGTGTGGCCGTG	.	33	12	29	0	.	.	A	1052002	G	A	1052002	2	1	31	1	0	0	0	0	0	0	0	1	37	1335	47	3		3	ABCA7	19	1052002	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		1052002	58076981	116	4881											
DOT1L	84444	hgsc.bcm.edu	37	chr19	2194519	2194519	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttctttccttccagaccatGgaccgcgagttcaggaagtg	8	12	10	11	2	2	1	1	0	1	1	4	4	4	3	4	2	0	1	4	2	1	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032482	exon7	c.G594T	p.M198I	GACCATGGACCGC	.	93	4	89	0	.	.	T	2194519	G	T	2194519	3	4	31	1	0	0	0	0	1	0	0	0	4736	1348	47	3	620	3	DOT1L	19	2194519	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1142517	2194519	56934464	117	4882											
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3778217	3778217	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cggggcgaggtggagccgtcGgcgtcctgccctgagacgga	5	5	19	12	6	0	1	0	1	0	1	2	5	1	3	3	6	2	0	3	6	0	0	rs373868622		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002378	exon14	c.C1491T	p.A497A	GCCGTCGGCGTCC	.	32	14	27	0	.	.	A	3778217	G	A	3778217	2	1	31	1	0	0	0	0	0	0	0	1	9382	1103	39	1		1	MATK	19	3778217	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1583698	3778217	55350766	118	4883											
XAB2	56949	bcgsc.ca	37	chr19	7690922	7690922	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gagatgaggtcgcacagctcGtgccacagctgcagggcatg	9	6	15	11	2	0	2	0	1	0	1	2	3	0	2	1	2	4	5	1	2	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	XAB2,rectum,carcinoma,0,1	XAB2	NM_020196	exon6	c.C666A	p.H222Q	CAGCTCGTGCCAC	.	43	4	33	0	.	69	T	7690922	T	T	7690922	3	4	31	1	0	0	0	0	1	0	0	0	17478	1136	40	2	1957	2	XAB2	19	7690922	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	3912705	7690922	51438061	119	4884											
MUC16	94025	hgsc.bcm.edu	37	chr19	9083333	9083333	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgtggtgatttcagacatggCtgtaacctcacctgggttca	8	12	11	10	1	3	2	3	1	0	1	3	2	3	2	2	3	1	3	2	3	1	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC16_ENST00000397910,NS,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.G8482A	p.A2828T	ACATGGCTGTAAC	.	47	2	47	0	.	0	T	9083333	C	T	9083333	3	4	31	1	0	0	0	0	1	0	0	0	10021	797	28	3	35377	3	MUC16	19	9083333	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	1392411	9083333	50045650	120	4885											
MUC16	94025	hgsc.bcm.edu	37	chr19	9090831	9090831	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ttgcttagtgtcatggaaaaAgggatagctgagttgggcat	11	12	14	4	0	1	1	1	1	0	0	1	3	1	3	0	3	2	4	0	3	4	4	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC16_ENST00000397910,bladder,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.T984C	p.P328P	GGAAAAAGGGATA	.	34	2	31	1	.	0	G	9090831	A	G	9090831	2	3	31	1	0	0	0	0	0	0	0	1	10021	59	3	4		4	MUC16	19	9090831	Silent	SNP	A	TCGA-ZH-A8Y4-01A-11D-A417-09	7498	9090831	50038152	121	4886											
ZNF846	162993	hgsc.bcm.edu	37	chr19	9869374	9869374	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	catgtgagtcataagaaatgGgtgttcattgaagacttttc	12	14	10	5	0	2	4	2	2	0	2	3	4	2	4	0	1	0	1	0	1	3	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001077624	exon6	c.C379A	p.P127T	GAAATGGGTGTTC	.	64	4	33	0	.	.	T	9869374	G	T	9869374	3	4	31	1	0	0	0	0	1	0	0	0	18236	1232	43	3	1226	3	ZNF846	19	9869374	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	778543	9869374	49259609	122	4887											
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	10468512	10468519	+	Frame_Shift_Del	DEL	CCACTTGT	CCACTTGT	-																															aggagggtggcgccaaacccCcacttgtccatggcggtgct																								novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	CCACTTGT	CCACTTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_003331	exon17	c.2388_2395del	p.796_799del	AAACCCCCACTTG	.	86	12	100	0	.	.	-	10468519	CCACTTGT	-	10468512	7	5	31	1	0	1	0	1	0	0	0	0	16872	624	22	0	1205	0	TYK2	19	10468512	Frame_Shift_Del	DEL	CCACTTGT	TCGA-ZH-A8Y4-01A-11D-A417-09	599138	10468512	48660471	123	4888											
RASAL3	64926	hgsc.bcm.edu	37	chr19	15572380	15572380	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggggcctcagggatctGtggggtagggggctccagct	4	9	20	8	0	2	0	1	0	1	0	3	1	3	1	2	7	1	3	2	7	1	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	RASAL3,NS,carcinoma,0,1	RASAL3	NM_022904	exon3	c.C367A	p.Q123K	GGATCTGTGGGGT	.	40	3	50	0	.	0	T	15572380	G	T	15572380	3	4	31	1	0	0	0	0	1	0	0	0	13117	1386	48	3	2732	3	RASAL3	19	15572380	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	5103868	15572380	43556603	124	4889											
COMP	1311	bcgsc.ca	37	chr19	18901408	18901408	+	Silent	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atcaccgtgtttttcaggaaCgtgatctccctgacctgcag	8	12	9	12	2	3	2	2	2	1	0	4	3	3	3	3	1	2	2	3	1	1	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	COMP	NM_000095	exon3	c.G180A	p.T60T	CAGGAACGTGATC	.	51	4	51	0	.	62	T	18901408	T	T	18901408	2	4	31	1	0	0	0	0	0	0	0	1	3747	523	19	1		1	COMP	19	18901408	Silent	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	3329028	18901408	40227575	125	4890											
DPY19L3	147991	hgsc.bcm.edu	37	chr19	32968452	32968452	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacactccaagaaaggctgtGtttgcgggaagcatgcagtt	12	9	12	8	1	0	1	0	0	0	1	1	2	1	2	1	2	4	5	1	2	4	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001172774	exon17	c.G1722A	p.V574V	GGCTGTGTTTGCG	.	99	4	90	0	.	.	A	32968452	G	A	32968452	2	1	31	1	0	0	0	0	0	0	0	1	4768	1364	48	3		3	DPY19L3	19	32968452	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	14067044	32968452	26160531	126	4891											
KIAA0355	9710	hgsc.bcm.edu;bcgsc.ca	37	chr19	34832636	34832636	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aacattggtaatttccccagGactacagacccttcacagtc	12	10	6	13	0	1	1	1	0	0	1	3	2	2	2	3	2	2	1	3	2	3	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014686	exon10	c.G1797T	p.R599S	CCCCAGGACTACA	.	65	4	60	0	.	.	T	34832636	G	T	34832636	3	4	31	1	0	0	0	0	1	0	0	0	8212	1165	41	3	1831	3	KIAA0355	19	34832636	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1864184	34832636	24296347	127	4892											
WTIP	126374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34981373	34981373	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acactgactgcttcacctgcGactcgtgtggtaggtaacct	8	11	10	12	2	1	1	1	1	0	0	2	2	1	1	2	2	3	3	2	2	2	3	rs373500546	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001080436	exon2	c.G760T	p.D254Y	ACCTGCGACTCGT	.	46	5	38	0	.	.	T	34981373	G	T	34981373	3	4	31	1	0	0	0	0	1	0	0	0	17470	1058	37	2	766	2	WTIP	19	34981373	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	148737	34981373	24147610	128	4893											
RBM42	79171	hgsc.bcm.edu;bcgsc.ca	37	chr19	36123879	36123879	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctatcctgcgtccagccttcGtcccccacgtgctacagaga	7	9	8	17	3	0	1	0	0	0	1	4	2	3	1	5	0	4	1	5	0	2	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024321	exon5	c.G484T	p.V162F	GCCTTCGTCCCCC	.	56	4	42	0	.	.	T	36123879	G	T	36123879	3	4	31	1	0	0	0	0	1	0	0	0	13188	1145	40	2	502	2	RBM42	19	36123879	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	1142506	36123879	23005104	129	4894											
PLEKHG2	64857	hgsc.bcm.edu;bcgsc.ca	37	chr19	39914272	39914272	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cccagccatccccctgtctgCcccaggagcaggcagagcca	8	4	10	19	0	1	1	0	0	1	1	2	2	2	2	7	2	4	2	7	2	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_022835	exon18	c.C2578T	p.P860S	TGTCTGCCCCAGG	.	67	4	80	0	.	.	T	39914272	C	T	39914272	3	4	31	1	0	0	0	0	1	0	0	0	12117	739	26	3	2644	3	PLEKHG2	19	39914272	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	3790393	39914272	19214711	130	4895											
ZNF780B	163131	hgsc.bcm.edu	37	chr19	40540576	40540576	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agaagaccaaaggcctttccGcattctttacattcaaaggg	13	10	8	10	1	2	2	1	0	1	2	3	2	3	2	3	2	1	1	3	2	4	5	rs376431224		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ZNF780B_ENST00000434248,NS,carcinoma,0,2	ZNF780B_ENST00000434248	NM_001005851	exon5	c.C2190T	p.C730C	CTTTCCGCATTCT	.	63	3	66	0	.	0	A	40540576	G	A	40540576	2	1	31	1	0	0	0	0	0	0	0	1	18202	1079	38	1		1	ZNF780B	19	40540576	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	626304	40540576	18588407	131	4896											
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44660536	44660536	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	actctatgataagtatttctCggttccccagacaaggtgat	11	13	8	9	1	2	3	0	2	2	1	4	3	3	3	2	2	0	2	2	2	4	5	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_006630	exon6	c.C367T	p.R123W	ATTTCTCGGTTCC	.	73	24	72	0	.	.	T	44660536	C	T	44660536	3	4	31	1	0	0	0	0	1	0	0	0	17845	875	31	1	381	1	ZNF234	19	44660536	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	4119960	44660536	14468447	132	4897											
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	58549386	58549386	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcgctgggccagctctggaCgctgtgccgccagtggctga	4	7	16	14	4	1	1	0	1	1	0	1	2	1	2	3	3	2	4	3	3	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_182572	exon3	c.C182T	p.T61M	TCTGGACGCTGTG	.	39	8	45	0	.	.	T	58549386	C	T	58549386	3	4	31	1	0	0	0	0	1	0	0	0	18268	536	19	1	184	1	ZSCAN1	19	58549386	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	13888850	58549386	579597	133	4898											
FOXS1	2307	hgsc.bcm.edu	37	chr20	30433234	30433234	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgccactgagggtggcccGctgccccggtgagctctgga	5	7	16	13	2	1	2	0	2	1	0	1	4	1	3	4	4	3	2	4	4	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004118	exon1	c.C112T	p.R38W	TGGCCCGCTGCCC	.	95	4	123	0	.	.	A	30433234	G	A	30433234	3	1	31	1	0	0	0	0	1	0	0	0	6069	1086	38	1	884	1	FOXS1	20	30433234	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		30433234	32592286	134	4899											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	56099137	56099137	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cctccaactcactagggctcCgatggtctttctctctgcac	6	12	7	16	1	4	0	1	0	3	0	7	1	6	0	3	2	2	2	3	2	2	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001269044	exon1	c.G125A	p.R42Q	GGGCTCCGATGGT	.	33	9	44	0	.	.	T	56099137	C	T	56099137	3	4	31	1	0	0	0	0	1	0	0	0	4025	652	23	1	1906	1	CTCFL	20	56099137	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	25665903	56099137	6926383	135	4900											
SIM2	6493	hgsc.bcm.edu	37	chr21	38114120	38114120	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caccgtggtgcacaacagccGctcgtcccggccccactgca	7	5	10	19	4	0	0	0	0	0	0	2	0	1	0	5	2	4	3	5	2	1	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SIM2_ENST00000430056,NS,carcinoma,0,2	SIM2_ENST00000430056	NM_005069	exon8	c.G953A	p.R318H	ACAGCCGCTCGTC	.	44	2	76	0	.	0	A	38114120	G	A	38114120	3	1	31	1	0	0	0	0	1	0	0	0	14379	1087	38	1	983	1	SIM2	21	38114120	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		38114120	10015775	136	4901											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30054251	30054251	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaactactttgcaatcCgggtgtgttgaaacctctct	8	14	10	9	1	1	2	0	2	1	0	3	2	2	2	2	1	4	2	2	1	4	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.,1	.	NM_000268	exon7	c.C673T	p.R225W	GCAATCCGGGTGT	.	52	5	72	0	.	1312	T	30054251	C	T	30054251	3	4	31	1	0	0	0	0	1	0	0	0	10404	643	23	1	699	1	NF2	22	30054251	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09		30054251	21250315	137	4902											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37900277	37900277	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	agggcaggatggagagccgaTtgatctccttttcactgtct	8	12	12	9	1	3	2	1	1	2	1	4	5	3	3	2	3	1	1	2	3	0	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014550	exon9	c.A1550G	p.N517S	AGCCGATTGATCT	.	22	8	28	0	.	.	C	37900277	T	C	37900277	3	2	31	1	0	0	0	0	1	0	0	0	2662	1493	52	4	1596	4	CARD10	22	37900277	Missense_Mutation	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	7846026	37900277	13404289	138	4903											
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38049853	38049853	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagtcccccggagacagctGccccagtggaggacatggct	8	5	15	13	1	0	1	0	0	0	1	1	5	1	4	4	5	2	2	4	5	0	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_018957	exon17	c.G1666A	p.A556T	ACAGCTGCCCCAG	.	178	114	122	0	.	.	A	38049853	G	A	38049853	3	1	31	1	0	0	0	0	1	0	0	0	14298	1319	46	3	1732	3	SH3BP1	22	38049853	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	149576	38049853	13254713	139	4904											
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38084863	38084863	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtccacccccacagaggaggCagatgagctggaccggttgg	9	5	15	12	1	0	3	0	1	0	2	1	5	1	5	4	5	1	3	4	5	0	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024313	exon4	c.C245A	p.A82E	AGGAGGCAGATGA	.	73	22	49	0	.	.	A	38084863	C	A	38084863	3	1	31	1	0	0	0	0	1	0	0	0	10569	710	25	3	259	3	NOL12	22	38084863	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	35010	38084863	13219703	140	4905											
CSDC2	27254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41970815	41970815	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atccctcccaagaaccagaaGttccaggccgtggaggtggt	10	7	12	12	1	0	2	0	0	0	2	3	3	3	3	5	4	1	1	5	4	3	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014460	exon4	c.G378T	p.K126N	CCAGAAGTTCCAG	.	56	4	68	0	.	.	T	41970815	G	T	41970815	3	4	31	1	0	0	0	0	1	0	0	0	3953	1020	36	3	388	3	CSDC2	22	41970815	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	3885952	41970815	9333751	141	4906											
CYP2D6	1565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42526688	42526688	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cccgggcagtggcagggggcCtggtgggtagcgtgcagccc	4	5	20	12	2	0	0	0	0	0	0	0	0	0	0	3	6	3	4	3	6	1	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CYP2D6	NM_000106	exon1	c.G106T	p.G36C	GGGGGCCTGGTGG	.	66	12	60	0	.	104	A	42526688	C	A	42526688	3	1	31	1	0	0	0	0	1	0	0	0	4192	681	24	3	1423	3	CYP2D6	22	42526688	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	555873	42526688	8777878	142	4907											
SMS	6611	hgsc.bcm.edu	37	chrX	21996164	21996164	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcaaagatgtactcattctgGgaggtggagacggaggcata	12	8	15	6	1	2	2	1	0	1	2	2	5	2	4	0	5	1	3	0	5	3	3	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004595	exon6	c.G592T	p.G198X	ATTCTGGGAGGTG	.	71	3	55	0	.	.	T	21996164	G	T	21996164	4	4	31	1	0	0	0	0	0	1	0	0	14867	1233	43	3	614	3	SMS	23	21996164	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09		21996164	133274396	143	4908											
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47426127	47426127	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	catccgctccacgtccactcCcaacgtccatatggtcagca	9	8	6	18	3	1	0	1	0	0	0	6	0	6	0	5	1	2	2	5	1	2	1	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001256196	exon7	c.C656T	p.P219L	CCACTCCCAACGT	.	58	48	70	0	.	.	T	47426127	C	T	47426127	3	4	31	1	0	0	0	0	1	0	0	0	834	623	22	3	669	3	ARAF	23	47426127	Missense_Mutation	SNP	C	TCGA-ZH-A8Y4-01A-11D-A417-09	25429963	47426127	107844433	144	4909											
UPRT	139596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	74494297	74494297	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agctggactctggggcctgcGgcggctccagcctcaactca	6	7	13	15	2	3	0	2	0	1	0	4	1	4	1	3	5	4	2	3	5	1	0	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145052	exon1	c.G208A	p.G70S	GCCTGCGGCGGCT	.	24	22	26	0	.	.	A	74494297	G	A	74494297	3	1	31	1	0	0	0	0	1	0	0	0	17074	1116	39	1	210	1	UPRT	23	74494297	Missense_Mutation	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	27068170	74494297	80776263	145	4910											
LRCH2	57631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	114357150	114357150	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctacatttcttcgacatttTgccatgctcagtttgggctg	6	17	8	10	1	3	0	1	0	2	0	4	1	3	0	1	1	3	3	1	1	1	6	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020871	exon20	c.A2118G	p.A706A	ACATTTTGCCATG	.	97	34	110	0	.	.	C	114357150	T	C	114357150	2	2	31	1	0	0	0	0	0	0	0	1	8978	1799	63	4		4	LRCH2	23	114357150	Silent	SNP	T	TCGA-ZH-A8Y4-01A-11D-A417-09	39862853	114357150	40913410	146	4911											
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152936621	152936621	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agctcagggtcgctctcgtcGtagaagggggggtacccaca	8	7	15	11	3	2	1	1	0	1	1	5	1	2	1	1	4	2	4	1	4	3	2	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001039582	exon8	c.C888T	p.Y296Y	CTCGTCGTAGAAG	.	31	7	31	0	.	.	A	152936621	G	A	152936621	2	1	31	1	0	0	0	0	0	0	0	1	12193	1140	40	1		1	PNCK	23	152936621	Silent	SNP	G	TCGA-ZH-A8Y4-01A-11D-A417-09	38579471	152936621	2333939	147	4912											
RPAP2	79871	bcgsc.ca	37	chr1	92789386	92789386	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	actcagagttcttcaaatagCactttgcctgaaagattaaa	15	12	6	8	0	3	3	2	1	1	2	3	3	3	3	1	0	2	2	1	0	5	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	RPAP2	NM_024813	exon8	c.C909A	p.S303R	AAATAGCACTTTG	.	20	3	53	0	.	48	A	92789386	A	A	92789386	3	1	32	1	0	0	0	0	1	0	0	0	13594	709	25	3	939	3	RPAP2	1	92789386	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		92789386	156461235	1	4913											
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842333	154842333	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgctgctgctgttgCtgctgctgctgctgctgctg	0	14	16	11	0	0	0	0	0	0	0	0	0	0	0	0	2	10	12	0	2	0	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001204087	exon1	c.G108A	p.Q36Q	CTGTTGCTGCTGC	.	90	4	32	0	.	.	T	154842333	C	T	154842333	2	4	32	1	0	0	0	0	0	0	0	1	8124	796	28	3		3	KCNN3	1	154842333	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	62052947	154842333	94408288	2	4914											
MAPKAPK2	9261	hgsc.bcm.edu	37	chr1	206858675	206858675	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgccgcaccccccggcgcAgccgccgccgccgcccccgc	2	1	11	27	8	0	0	0	0	0	0	0	0	0	0	11	1	2	2	11	1	0	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,2	.	NM_004759	exon1	c.A101C	p.Q34P	CGGCGCAGCCGCC	.	21	2	12	0	.	45	C	206858675	A	C	206858675	3	2	32	1	0	0	0	0	1	0	0	0	9339	188	7	4	103	4	MAPKAPK2	1	206858675	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09	52016342	206858675	42391946	3	4915											
CENPF	1063	hgsc.bcm.edu;bcgsc.ca	37	chr1	214818019	214818019	+	Silent	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgctcagcaggacctCaatctagacattgagaaaat	17	8	8	8	0	3	3	2	1	1	3	3	5	3	4	1	1	2	2	1	1	5	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CENPF,right_lower_lobe,carcinoma,0,1	CENPF	NM_016343	exon13	c.C5106A	p.L1702L	GGACCTCAATCTA	.	88	4	41	0	.	0	A	214818019	C	A	214818019	2	1	32	1	0	0	0	0	0	0	0	1	3253	813	29	3		3	CENPF	1	214818019	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	7959344	214818019	34432602	4	4916											
USH2A	7399	hgsc.bcm.edu	37	chr1	216591858	216591858	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attttttattttactcacctGcacactaagatgaatccatt	12	17	3	9	0	1	2	1	1	0	1	2	2	2	2	2	0	2	1	2	0	4	7	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_007123	exon3	c.C649T	p.Q217X	TCACCTGCACACT	.	92	4	51	0	.	.	A	216591858	G	A	216591858	4	1	32	1	0	0	0	0	0	1	0	0	17096	1328	46	3	15253	3	USH2A	1	216591858	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	1773839	216591858	32658763	5	4917											
ACTN2	88	hgsc.bcm.edu	37	chr1	236882229	236882229	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	aacctgaccggggaaaaatgCggttccacaaaattgctaat	15	8	9	9	2	0	1	0	1	0	0	1	2	1	2	3	3	3	2	3	3	6	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001103	exon3	c.C277T	p.R93W	AAAATGCGGTTCC	.	87	4	51	0	.	.	T	236882229	C	T	236882229	3	4	32	1	0	0	0	0	1	0	0	0	205	759	27	1	287	1	ACTN2	1	236882229	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	20290371	236882229	12368392	6	4918											
CLIP4	79745	hgsc.bcm.edu	37	chr2	29404628	29404628	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ttgagctccgaagcgccaagGgaaaaaatgatgggtcagtg	13	7	14	7	2	1	2	1	2	0	0	2	4	2	3	2	2	2	1	2	2	5	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_024692	exon16	c.G1987T	p.G663X	GCCAAGGGAAAAA	.	20	3	38	0	.	.	T	29404628	G	T	29404628	4	4	32	1	0	0	0	0	0	1	0	0	3558	1233	43	3	2045	3	CLIP4	2	29404628	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		29404628	213794745	7	4919											
SESTD1	91404	hgsc.bcm.edu;bcgsc.ca	37	chr2	180016103	180016103	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ataacgagtcaatttgttggCggacactaaaataacctata	16	11	7	7	2	1	0	1	0	0	0	1	2	1	1	1	2	2	1	1	2	7	7	rs377062896		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_178123	exon6	c.G385A	p.A129T	TGTTGGCGGACAC	.	59	5	108	0	.	.	T	180016103	C	T	180016103	3	4	32	1	0	0	0	0	1	0	0	0	14181	768	27	1	1757	1	SESTD1	2	180016103	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	150611475	180016103	63183270	8	4920											
ITGAV	3685	hgsc.bcm.edu	37	chr2	187511445	187511445	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgctccatatgggggtgaaGataaaaaaggaattgtttat	14	12	11	4	0	0	2	0	1	0	1	1	3	1	3	1	3	1	2	1	3	7	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ITGAV,caecum,carcinoma,0,1	ITGAV	NM_002210	exon13	c.G1192T	p.D398Y	GGTGAAGATAAAA	.	26	2	25	0	.	0	T	187511445	G	T	187511445	3	4	32	1	0	0	0	0	1	0	0	0	7932	942	33	3	1293	3	ITGAV	2	187511445	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	7495342	187511445	55687928	9	4921											
DOCK10	55619	hgsc.bcm.edu	37	chr2	225637968	225637968	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	taagctcagaaaccttcttgGacatctcgtcaattgccact	11	12	6	12	1	4	1	2	0	2	1	5	2	4	2	2	1	3	1	2	1	3	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	DOCK10_ENST00000373702,NS,carcinoma,0,2	DOCK10_ENST00000373702	NM_014689	exon53	c.C6110A	p.S2037Y	TTCTTGGACATCT	.	33	2	37	0	.	0	T	225637968	G	T	225637968	3	4	32	1	0	0	0	0	1	0	0	0	4712	1174	41	3	466	3	DOCK10	2	225637968	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	38126523	225637968	17561405	10	4922											
GIGYF2	26058	hgsc.bcm.edu	37	chr2	233708929	233708929	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcagcagcagcagcaGcaacaccagcaaccaaacag	18	0	9	14	0	0	0	0	0	0	0	0	0	0	0	2	0	11	8	2	0	4	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	GIGYF2_ENST00000409451,NS,carcinoma,0,2	GIGYF2_ENST00000409451	NM_001103147	exon26	c.G3126A	p.Q1042Q	GCAGCAGCAACAC	.	26	2	26	0	.	0	A	233708929	G	A	233708929	2	1	32	1	0	0	0	0	0	0	0	1	6420	962	34	3		3	GIGYF2	2	233708929	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	8070961	233708929	9490444	11	4923											
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242051786	242051786	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gtgaagtcctcggcgatcacGatgttctcatccttgatgtc	7	13	10	11	3	2	2	2	2	1	0	7	4	4	2	2	1	0	1	2	1	1	2	rs200314136	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001252119	exon15	c.C3423T	p.I1141I	GATCACGATGTTC	.	22	8	22	0	0.001	.	A	242051786	G	A	242051786	2	1	32	1	0	0	0	0	0	0	0	1	11519	1048	37	1		1	PASK	2	242051786	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	8342857	242051786	1147587	12	4924											
ANO7	50636	hgsc.bcm.edu;ucsc.edu	37	chr2	242135132	242135132	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcccagcagacttcgtcctcGtttgggaggaggacctgaag	8	9	13	11	2	0	2	0	1	0	1	4	5	2	5	3	3	1	2	3	3	1	2	rs149691575	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001001891	exon4	c.G343A	p.V115I	GTCCTCGTTTGGG	.	20	11	11	0	0.000	.	A	242135132	G	A	242135132	3	1	32	1	0	0	0	0	1	0	0	0	696	1145	40	1	357	1	ANO7	2	242135132	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	83346	242135132	1064241	13	4925											
LRRC2	79442	ucsc.edu;bcgsc.ca	37	chr3	46563075	46563075	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaatgttggcgatcccGttcactttccattatttcat	10	16	5	10	2	3	0	3	0	0	0	5	1	5	0	2	1	0	2	2	1	3	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	LRRC2,NS,carcinoma,+1,3	LRRC2	NM_024512	exon8	c.C1003A	p.R335R	GATCCCGTTCACT	.	38	4	40	0	.	37	T	46563075	G	T	46563075	2	4	32	1	0	0	0	0	0	0	0	1	9021	1144	40	2		2	LRRC2	3	46563075	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		46563075	151459355	14	4926											
SETD2	29072	hgsc.bcm.edu	37	chr3	47129614	47129614	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	agtgttcacctgtatgagttCcagacaggtaagtttctgct	9	14	10	8	0	2	2	1	1	1	1	3	2	3	2	2	1	1	6	2	1	2	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SETD2_ENST00000409792,NS,carcinoma,0,2	SETD2_ENST00000409792	NM_014159	exon10	c.G5266A	p.E1756K	TGAGTTCCAGACA	.	47	2	44	0	.	0	T	47129614	C	T	47129614	3	4	32	1	0	0	0	0	1	0	0	0	14185	864	30	3	2476	3	SETD2	3	47129614	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	566539	47129614	150892816	15	4927											
VPRBP	9730	broad.mit.edu;bcgsc.ca	37	chr3	51449832	51449832	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gaaatctcaaagaccactgaCctggtcctcctcttcatcct	10	11	5	15	0	3	2	2	1	2	1	7	3	6	2	5	1	0	0	5	1	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	VPRBP	NM_001171904	exon22	c.4050+1G>C	.	CACTGACCTGGTC	.	14	10	24	0	.	107	G	51449832	C	G	51449832	5	3	32	1	0	0	0	0	0	0	1	0	17245	521	18	5	322	5	VPRBP	3	51449832	Splice_Site	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	4320218	51449832	146572598	16	4928											
C3orf17	25871	hgsc.bcm.edu	37	chr3	112727076	112727076	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttaagaagtttgttacccaGaaaaatggcctgagccttga	13	12	9	7	0	0	4	0	2	0	2	0	4	0	4	3	1	2	2	3	1	5	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_015412	exon8	c.C1177A	p.L393M	TACCCAGAAAAAT	.	63	3	99	0	.	.	T	112727076	G	T	112727076	3	4	32	1	0	0	0	0	1	0	0	0	2224	933	33	3	534	3	C3orf17	3	112727076	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	61277244	112727076	85295354	17	4929											
KBTBD12	166348	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	127703108	127703108	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttcagatttggtggaagaagGcaatgagcactaaggtgacc	13	9	13	6	0	1	4	1	2	0	2	1	5	1	5	1	4	1	2	1	4	4	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_207335	exon5	c.G1859T	p.G620V	AAGAAGGCAATGA	.	36	4	30	0	.	.	T	127703108	G	T	127703108	3	4	32	1	0	0	0	0	1	0	0	0	8035	1203	42	3	1877	3	KBTBD12	3	127703108	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	14976032	127703108	70319322	18	4930											
IFT122	55764	hgsc.bcm.edu	37	chr3	129218838	129218838	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggagcccaaagccgccGtggagatgtacatctcagca	12	6	11	12	2	2	1	2	0	1	1	3	3	2	2	3	2	4	2	3	2	3	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	IFT122,colon,carcinoma,0,3	IFT122	NM_052985	exon20	c.G2455T	p.V819L	GCCGCCGTGGAGA	.	45	3	51	0	.	0	T	129218838	G	T	129218838	3	4	32	1	0	0	0	0	1	0	0	0	7599	1145	40	2	2533	2	IFT122	3	129218838	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	1515730	129218838	68803592	19	4931											
CLRN1	7401	hgsc.bcm.edu	37	chr3	150690293	150690293	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cacactgcctcacaccctctCcgtggaaaagcccgtactgc	9	7	7	18	2	2	0	1	0	1	0	3	1	2	1	4	1	4	1	4	1	3	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CLRN1,NS,carcinoma,0,1	CLRN1	NM_001256819	exon1	c.G203A	p.G68E	CCCTCTCCGTGGA	.	28	2	24	0	.	0	T	150690293	C	T	150690293	3	4	32	1	0	0	0	0	1	0	0	0	3580	855	30	3	561	3	CLRN1	3	150690293	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	21471455	150690293	47332137	20	4932											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	194168696	194168696	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	taaaatcagttggtttgggaTacaatatggaacgaacaagc	16	10	10	5	1	1	0	1	0	0	0	1	3	1	2	0	3	4	2	0	3	8	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_024524	exon12	c.A1193G	p.Y398C	TTGGGATACAATA	.	73	30	141	0	.	.	C	194168696	T	C	194168696	3	2	32	1	0	0	0	0	1	0	0	0	1124	1406	49	4	2571	4	ATP13A3	3	194168696	Missense_Mutation	SNP	T	TCGA-ZH-A8Y5-01A-11D-A417-09	43478403	194168696	3853734	21	4933											
TMEM44	93109	hgsc.bcm.edu	37	chr3	194337847	194337847	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcgaggtccagtgccgcaCggccgagggaggtcaggaac	9	3	17	12	4	1	0	1	0	0	0	2	4	2	2	3	5	3	1	3	5	1	0	rs369611318		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001166305	exon7	c.G905A	p.R302H	GCCGCACGGCCGA	.	75	4	89	0	.	.	T	194337847	C	T	194337847	3	4	32	1	0	0	0	0	1	0	0	0	16228	536	19	1	576	1	TMEM44	3	194337847	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	169151	194337847	3684583	22	4934											
MUC4	4585	hgsc.bcm.edu	37	chr3	195508450	195508450	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtggatgctgaggaaGggctggtgacatgaagaggg	10	7	18	6	0	0	4	0	3	0	1	0	6	0	6	1	5	1	2	1	5	2	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,7	.	NM_018406	exon2	c.C10001T	p.P3334L	GAGGAAGGGCTGG	.	20	2	18	2	.	1505	A	195508450	G	A	195508450	3	1	32	1	0	0	0	0	1	0	0	0	10026	1000	35	3		3	MUC4	3	195508450	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	1170603	195508450	2513980	23	4935											
CENPC1	1060	hgsc.bcm.edu	37	chr4	68396538	68396538	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ggagatggcaccaacctgatCtgtttgtggcttcacttggt	7	13	12	9	0	2	2	1	1	1	1	2	3	2	2	2	4	1	3	2	4	1	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001812	exon5	c.G326A	p.R109K	CCTGATCTGTTTG	.	76	4	77	0	.	.	T	68396538	C	T	68396538	3	4	32	1	0	0	0	0	1	0	0	0	3251	913	32	3	2565	3	CENPC1	4	68396538	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		68396538	122757738	24	4936											
UGT2B17	7367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69403575	69403575	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctcgatccaggggcttcaccGgttgatcatgatgaattctt	8	13	10	10	2	3	3	2	3	1	0	5	4	4	3	2	3	0	2	2	3	1	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001077	exon6	c.C1361T	p.P454L	TTCACCGGTTGAT	.	58	48	59	0	.	.	A	69403575	G	A	69403575	3	1	32	1	0	0	0	0	1	0	0	0	17019	1116	39	1	235	1	UGT2B17	4	69403575	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	1007037	69403575	121750701	25	4937											
MANBA	4126	hgsc.bcm.edu	37	chr4	103560932	103560932	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccaataaagtgcccccatcGtgtgcccttgctgatccact	8	10	8	15	1	0	1	0	1	0	0	2	1	1	1	5	0	3	1	5	0	3	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	MANBA,colon,carcinoma,0,1	MANBA	NM_005908	exon14	c.C1952T	p.T651M	CCCATCGTGTGCC	.	33	2	29	0	.	0	A	103560932	G	A	103560932	3	1	32	1	0	0	0	0	1	0	0	0	9269	1145	40	1	703	1	MANBA	4	103560932	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	34157357	103560932	87593344	26	4938											
CENPE	1062	broad.mit.edu	37	chr4	104032141	104032141	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aagttaagggtttatttgaaGgctgaggatcagtatgttct	11	15	12	3	0	2	2	1	2	1	0	2	3	2	3	0	3	0	5	0	3	5	6	rs373836132	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	CENPE	NM_001813	exon47	c.C7568A	p.P2523H	TTTGAAGGCTGAG	.	45	3	43	0	.	253	T	104032141	G	T	104032141	3	4	32	1	0	0	0	0	1	0	0	0	3252	1000	35	3	549	3	CENPE	4	104032141	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	471209	104032141	87122135	27	4939											
MARCH6	10299	broad.mit.edu	37	chr5	10415711	10415711	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctaaccataagggctgtgaCggtgatggtggcatggatgc	9	9	16	7	1	0	2	0	2	0	0	0	3	0	3	1	5	2	3	1	5	2	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	MARCH6	NM_005885	exon21	c.C2078T	p.T693M	CTGTGACGGTGAT	.	37	3	55	0	.	89	T	10415711	C	T	10415711	3	4	32	1	0	0	0	0	1	0	0	0	9355	536	19	1	2160	1	MARCH6	5	10415711	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		10415711	170499549	28	4940											
ELOVL7	79993	hgsc.bcm.edu	37	chr5	60060157	60060157	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgcgcagaacaaaaaaGatctgaaataatttaaagaa	20	10	6	5	1	2	4	0	1	2	3	2	4	2	4	0	0	2	1	0	0	9	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ELOVL7,NS,carcinoma,0,1	ELOVL7	NM_001104558	exon6	c.C396A	p.I132I	AAAAAAGATCTGA	.	44	2	73	0	.	0	T	60060157	G	T	60060157	2	4	32	1	0	0	0	0	0	0	0	1	5107	932	33	3		3	ELOVL7	5	60060157	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	49644446	60060157	120855103	29	4941											
PGGT1B	5229	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	114566719	114566719	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccagtccattgtcataggaCtgaaaaagaaaaacattgtt	16	10	8	7	0	1	2	1	1	0	1	2	3	2	3	2	1	1	1	2	1	5	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005023	exon7	c.613-1G>A	.	ATAGGACTGAAAA	.	26	4	36	0	.	.	T	114566719	C	T	114566719	5	4	32	1	0	0	0	0	0	0	1	0	11837	579	20	3	537	3	PGGT1B	5	114566719	Splice_Site	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	54506562	114566719	66348541	30	4942											
GNPDA1	10007	hgsc.bcm.edu	37	chr5	141384672	141384672	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggcaatgtgtccatcaGggccgatgcctatagggaga	11	8	14	8	1	1	2	1	1	0	1	2	4	2	2	3	3	1	1	3	3	4	2	rs11557798	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005471	exon5	c.C419G	p.P140R	CCATCAGGGCCGA	.	19	9	8	0	.	.	C	141384672	G	C	141384672	3	2	32	1	0	0	0	0	1	0	0	0	6584	1000	35	5	462	5	GNPDA1	5	141384672	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	26817953	141384672	39530588	31	4943											
SMAP1	60682	hgsc.bcm.edu	37	chr6	71567931	71567931	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gccccagtggagcctctcacAggtaggggtcatttactttc	7	11	11	12	0	2	0	2	0	1	0	4	1	2	1	3	4	2	1	3	4	2	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SMAP1_ENST00000370455,NS,carcinoma,0,2	SMAP1_ENST00000370455	NM_001044305	exon10	c.A1268G	p.Q423R	TCTCACAGGTAGG	.	50	2	63	0	.	0	G	71567931	A	G	71567931	3	3	32	1	0	0	0	0	1	0	0	0	14820	202	7	4	1306	4	SMAP1	6	71567931	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09		71567931	99547136	32	4944											
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	106553700	106553700	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctcattaaaaacaaaagaaaCatgaccggctacaagaccct	19	6	5	11	1	1	3	1	1	0	2	1	3	1	3	2	1	3	1	2	1	8	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001198	exon5	c.C1665A	p.N555K	AAGAAACATGACC	.	22	17	25	0	.	.	A	106553700	C	A	106553700	3	1	32	1	0	0	0	0	1	0	0	0	12502	477	17	3	1696	3	PRDM1	6	106553700	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	34985769	106553700	64561367	33	4945											
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167447400	167447400	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agaaaagtgagataagtattGgtgaagagatagaagaagac	20	7	13	1	0	0	7	0	2	0	6	0	9	0	7	0	1	0	1	0	1	8	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_007045	exon12	c.G1066A	p.G356S	AGTATTGGTGAAG	.	33	26	67	0	.	.	A	167447400	G	A	167447400	3	1	32	1	0	0	0	0	1	0	0	0	5897	1348	47	3	1112	3	FGFR1OP	6	167447400	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	60893700	167447400	3667667	34	4946											
ABCA13	154664	hgsc.bcm.edu	37	chr7	48318114	48318114	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aataaggacttctatgctttGtatcctaccctccaagaagt	12	13	6	10	0	1	1	0	0	1	1	3	2	3	2	3	1	2	2	3	1	7	6	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ABCA13_ENST00000435803,NS,carcinoma,0,2	ABCA13_ENST00000435803	NM_152701	exon18	c.G7323T	p.L2441F	TGCTTTGTATCCT	.	32	2	56	0	.	0	T	48318114	G	T	48318114	3	4	32	1	0	0	0	0	1	0	0	0	31	1368	48	3	7222	3	ABCA13	7	48318114	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		48318114	110820549	35	4947											
PINX1	54984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	10677706	10677706	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtacgtggctttatacctcGggagtcttcttactctgtct	5	17	9	10	2	4	0	0	0	4	0	5	1	4	1	1	2	3	2	1	2	4	6	rs368778352	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_017884	exon6	c.C468T	p.P156P	TACCTCGGGAGTC	.	65	58	90	0	.	.	A	10677706	G	A	10677706	2	1	32	1	0	0	0	0	0	0	0	1	11981	1103	39	1		1	PINX1	8	10677706	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		10677706	135686316	36	4948											
DMRTA1	63951	hgsc.bcm.edu	37	chr9	22451584	22451584	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagttttagtcttgctGgaattggttttggaactcta	8	18	9	6	0	3	0	1	0	2	0	3	2	3	2	0	3	2	3	0	3	5	8	rs150162716	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	DMRTA1,arm,malignant_melanoma,0,1	DMRTA1	NM_022160	exon2	c.G1189T	p.G397X	CTTGCTGGAATTG	.	49	3	57	0	.	0	T	22451584	G	T	22451584	4	4	32	1	0	0	0	0	0	1	0	0	4616	1349	47	3	1195	3	DMRTA1	9	22451584	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		22451584	118761847	37	4949											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135786449	135786449	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggtgggacatttccaggagAagttggaggagtggtcatac	11	9	16	5	0	1	1	1	0	0	1	2	5	2	4	1	6	1	1	1	6	2	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_000368	exon11	c.T1081G	p.S361A	CAGGAGAAGTTGG	.	38	15	48	0	.	.	C	135786449	A	C	135786449	3	2	32	1	0	0	0	0	1	0	0	0	16666	246	9	4	2465	4	TSC1	9	135786449	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09	113334865	135786449	5426982	38	4950											
USP6NL	9712	hgsc.bcm.edu	37	chr10	11505503	11505503	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccttcctgatatttgaagtgGcgttgctattttggttggca	6	17	11	7	1	0	2	0	2	0	0	1	2	1	2	2	3	1	4	2	3	3	8	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001080491	exon14	c.C1475A	p.A492D	GAAGTGGCGTTGC	.	50	4	44	0	.	.	T	11505503	G	T	11505503	3	4	32	1	0	0	0	0	1	0	0	0	17147	1203	42	3	1066	3	USP6NL	10	11505503	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		11505503	124029244	39	4951											
CUBN	8029	hgsc.bcm.edu	37	chr10	17026203	17026203	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atttccagtgctggagacctGcatggggttctcaggtgatc	7	12	13	9	0	1	2	1	1	1	1	4	3	2	2	2	4	2	3	2	4	0	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001081	exon30	c.C4426T	p.Q1476X	AGACCTGCATGGG	.	72	4	39	0	.	.	A	17026203	G	A	17026203	4	1	32	1	0	0	0	0	0	1	0	0	4074	1328	46	3	6597	3	CUBN	10	17026203	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	5520700	17026203	118508544	40	4952											
ARHGAP19	84986	hgsc.bcm.edu	37	chr10	99024582	99024582	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	taaaatttcaagtagtcttaCttttgtgtagatactcaatc	13	17	5	6	0	3	1	2	0	1	1	4	1	3	1	0	0	2	2	0	0	8	8	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARHGAP19_ENST00000358531,NS,carcinoma,0,1	ARHGAP19_ENST00000358531	NM_032900	exon4	c.403+1G>A	.	GTCTTACTTTTGT	.	50	2	35	0	.	0	T	99024582	C	T	99024582	5	4	32	1	0	0	0	0	0	0	1	0	866	579	20	3	1120	3	ARHGAP19	10	99024582	Splice_Site	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	81998379	99024582	36510165	41	4953											
ADRA2A	150	hgsc.bcm.edu	37	chr10	112838330	112838330	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tccatcgagaagaagggcggCggcggcggcccgcagccggc	7	2	18	14	7	0	2	0	0	0	2	2	3	1	2	3	6	1	1	3	6	2	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ADRA2A,colon,carcinoma,0,1	ADRA2A	NM_000681	exon1	c.C576T	p.G192G	GGGCGGCGGCGGC	.	33	2	34	0	.	0	T	112838330	C	T	112838330	2	4	32	1	0	0	0	0	0	0	0	1	336	755	27	1		1	ADRA2A	10	112838330	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	13813748	112838330	22696417	42	4954											
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	135053262	135053262	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggtccgcaccttggagggCgtcttccagcaccaccagta	8	7	11	15	2	1	0	0	0	1	0	3	1	3	1	5	3	1	3	5	3	1	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_014468	exon2	c.C324T	p.G108G	GGAGGGCGTCTTC	.	33	11	26	0	.	.	T	135053262	C	T	135053262	2	4	32	1	0	0	0	0	0	0	0	1	17213	755	27	1		1	VENTX	10	135053262	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	22214932	135053262	481485	43	4955											
ZNF195	7748	hgsc.bcm.edu;bcgsc.ca	37	chr11	3381489	3381489	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	agagcatttgaaaggatttgCcacattcttgacatttgaaa	14	13	8	6	0	1	4	0	3	1	1	1	5	1	5	1	1	2	1	1	1	2	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001130520	exon6	c.G749A	p.G250D	GATTTGCCACATT	.	51	4	60	0	.	.	T	3381489	C	T	3381489	3	4	32	1	0	0	0	0	1	0	0	0	17816	739	26	3	1144	3	ZNF195	11	3381489	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		3381489	131625027	44	4956											
ART5	116969	broad.mit.edu;ucsc.edu	37	chr11	3661209	3661209	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acctccccaggtcccctgctGcagcccccactgcctcgcag	5	6	8	22	1	0	0	0	0	0	0	3	0	2	0	8	1	4	3	8	1	0	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ART5	NM_001079536	exon3	c.C450A	p.C150X	CCTGCTGCAGCCC	.	52	9	82	1	.	38	T	3661209	G	T	3661209	4	4	32	1	0	0	0	0	0	1	0	0	999	1311	46	3	437	3	ART5	11	3661209	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	279720	3661209	131345307	45	4957											
PRMT3	10196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	20448337	20448337	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ataaacttgaagatactattAcactaattaaaggaaagatt	20	12	5	4	0	0	3	0	1	0	2	0	4	0	4	0	1	3	0	0	1	10	8	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005788	exon10	c.A919G	p.T307A	ACTATTACACTAA	.	85	32	105	0	.	.	G	20448337	A	G	20448337	3	3	32	1	0	0	0	0	1	0	0	0	12590	391	14	4	957	4	PRMT3	11	20448337	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09	16787128	20448337	114558179	46	4958											
SLC5A12	159963	hgsc.bcm.edu;bcgsc.ca	37	chr11	26725205	26725205	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aaaagtgtgtcgcctgagagGatctacatcaaagctatgag	14	9	11	7	1	2	2	1	2	1	1	3	4	2	3	1	1	2	1	1	1	5	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_178498	exon6	c.C694A	p.P232T	TGAGAGGATCTAC	.	56	4	60	0	.	.	T	26725205	G	T	26725205	3	4	32	1	0	0	0	0	1	0	0	0	14719	1174	41	3	1202	3	SLC5A12	11	26725205	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	6276868	26725205	108281311	47	4959											
SLC3A2	6520	ucsc.edu;bcgsc.ca	37	chr11	62648550	62648550	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tggagctgaatgagttagagCccgagaagcagccgatgaac	13	6	14	8	2	0	5	0	3	0	2	0	8	0	6	2	1	5	3	2	1	4	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SLC3A2	NM_001012662	exon4	c.C361T	p.P121S	TTAGAGCCCGAGA	.	40	4	47	0	.	55	T	62648550	C	T	62648550	3	4	32	1	0	0	0	0	1	0	0	0	14682	739	26	3	472	3	SLC3A2	11	62648550	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	35923345	62648550	72357966	48	4960											
ANO1	55107	ucsc.edu;bcgsc.ca	37	chr11	69950201	69950201	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agcccaaagtggctgagcacAggccccagaccatgaagaga	14	3	12	12	0	0	4	0	2	0	2	0	5	0	4	4	2	2	2	4	2	2	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ANO1	NM_018043	exon4	c.A637T	p.R213W	GAGCACAGGCCCC	.	15	4	27	0	.	156	T	69950201	A	T	69950201	3	4	32	1	0	0	0	0	1	0	0	0	689	179	7	5	651	5	ANO1	11	69950201	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09	7301651	69950201	65056315	49	4961											
MLL	4297	hgsc.bcm.edu	37	chr11	118344932	118344932	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagacaagcttccaatgactGacaagagggttgccagcctc	12	7	10	12	0	0	4	0	2	0	2	2	4	1	4	3	1	3	2	3	1	3	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001197104	exon3	c.G3058T	p.D1020Y	ATGACTGACAAGA	.	35	3	29	0	.	.	T	118344932	G	T	118344932	3	4	32	1	0	0	0	0	1	0	0	0	9668	1290	45	3	3068	3	MLL	11	118344932	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	48394731	118344932	16661584	50	4962											
PRDM10	56980	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	129784863	129784863	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgtatggtgttggaGagctgggcgaactctggatg	6	12	19	4	1	1	1	0	0	1	1	1	4	1	2	0	5	2	3	0	5	2	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020228	exon18	c.C2589A	p.L863L	GTTGGAGAGCTGG	.	19	4	22	0	.	.	T	129784863	G	T	129784863	2	4	32	1	0	0	0	0	0	0	0	1	12503	929	33	3		3	PRDM10	11	129784863	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	11439931	129784863	5221653	51	4963											
VPS26B	112936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	134113055	134113055	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gtagggaagatatacttcctGctggtgagaatcaaaatcaa	15	10	10	6	0	2	2	2	1	0	2	3	4	3	3	1	2	2	2	1	2	8	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_052875	exon4	c.G588C	p.L196L	CTTCCTGCTGGTG	.	34	9	52	0	.	.	C	134113055	G	C	134113055	2	2	32	1	0	0	0	0	0	0	0	1	17258	1306	46	5		5	VPS26B	11	134113055	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	4328192	134113055	893461	52	4964											
C12orf5	57103	hgsc.bcm.edu	37	chr12	4458991	4458991	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgattttcagaccatgCatggaattttggagagaagc	11	13	11	6	0	2	3	1	1	1	2	2	6	2	5	1	2	2	1	1	2	2	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020375	exon4	c.C199T	p.H67Y	ACCATGCATGGAA	.	79	4	58	0	.	.	T	4458991	C	T	4458991	3	4	32	1	0	0	0	0	1	0	0	0	1700	710	25	3	213	3	C12orf5	12	4458991	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		4458991	129392904	53	4965											
NDUFA9	4704	hgsc.bcm.edu;bcgsc.ca	37	chr12	4763523	4763523	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcgccagcttcatcatGccctcatgcctcatgggaaa	8	10	8	15	1	4	0	4	0	0	0	5	1	4	1	4	1	3	1	4	1	1	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005002	exon2	c.G115T	p.A39S	CATCATGCCCTCA	.	72	4	48	0	.	.	T	4763523	G	T	4763523	3	4	32	1	0	0	0	0	1	0	0	0	10319	1319	46	3	121	3	NDUFA9	12	4763523	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	304532	4763523	129088372	54	4966											
ARID2	196528	hgsc.bcm.edu	37	chr12	46245336	46245336	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cagggggagtacaaactgtgCccatttcgaacttacaaata	14	9	9	9	1	0	0	0	0	0	0	1	2	0	1	1	2	5	1	1	2	6	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARID2,NS,carcinoma,0,1	ARID2	NM_152641	exon15	c.C3430T	p.P1144S	ACTGTGCCCATTT	.	33	2	43	0	.	0	T	46245336	C	T	46245336	3	4	32	1	0	0	0	0	1	0	0	0	912	739	26	3	3488	3	ARID2	12	46245336	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	41481813	46245336	87606559	55	4967											
SOAT2	8435	bcgsc.ca	37	chr12	53509269	53509269	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgtccaccctgttggCgccgtaccaggccctacggc	4	10	11	16	3	1	0	0	0	1	0	2	0	2	0	5	3	2	3	5	3	2	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SOAT2	NM_003578	exon6	c.C539T	p.A180V	TGTTGGCGCCGTA	.	15	3	18	0	.	44	T	53509269	T	T	53509269	3	4	32	1	0	0	0	0	1	0	0	0	14965	768	27	1	561	1	SOAT2	12	53509269	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	7263933	53509269	80342626	56	4968											
EP400	57634	hgsc.bcm.edu	37	chr12	132547144	132547144	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcaacagcaGcagcagcaacagacgacgac	16	0	11	14	2	0	1	0	0	0	1	0	3	0	1	0	0	10	8	0	0	2	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	EP400,NS,carcinoma,0,1	EP400	NM_015409	exon47	c.G8232A	p.Q2744Q	ACAGCAGCAGCAG	.	12	3	34	1	.	0	A	132547144	G	A	132547144	2	1	32	1	0	0	0	0	0	0	0	1	5177	962	34	3		3	EP400	12	132547144	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	79037875	132547144	1304751	57	4969											
PABPC3	5042	hgsc.bcm.edu	37	chr13	25671456	25671456	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tagctcagcgcaaagaagagCgccaggcttacctcactaac	13	6	9	13	2	2	2	2	0	0	2	2	2	2	2	2	1	5	3	2	1	5	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PABPC3,colon,carcinoma,-1,1	PABPC3	NM_030979	exon1	c.C1120T	p.R374C	GAAGAGCGCCAGG	.	39	2	74	0	.	-1	T	25671456	C	T	25671456	3	4	32	1	0	0	0	0	1	0	0	0	11412	768	27	1	1122	1	PABPC3	13	25671456	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		25671456	89498422	58	4970											
MAB21L1	4081	hgsc.bcm.edu;ucsc.edu	37	chr13	36048562	36048562	+	RNA	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tagaaatagaacaagcaataTttgaaacaaaatgtaaactt	22	10	5	4	0	0	3	0	1	0	2	0	3	0	3	0	0	4	2	0	0	12	6	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GCAATATTTGAAA	.	123	56	149	0	.	.	G	36048562	T	G	36048562	1	3	32	0	1	0	0	0	0	0	0	0	9187	1508	52	4		4	MAB21L1	13	36048562	RNA	SNP	T	TCGA-ZH-A8Y5-01A-11D-A417-09	10377106	36048562	79121316	59	4971											
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr13	39454561	39454561	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ccccaatccaccaccaagagCcggaagaagagagagatcag	16	2	10	13	1	1	4	1	0	0	4	2	7	2	5	6	1	1	0	6	1	4	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_207361	exon24	c.C9147T	p.S3049S	CAAGAGCCGGAAG	.	29	4	41	0	.	.	T	39454561	C	T	39454561	2	4	32	1	0	0	0	0	0	0	0	1	6080	738	26	3		3	FREM2	13	39454561	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	3405999	39454561	75715317	60	4972											
TXNDC16	57544	hgsc.bcm.edu;bcgsc.ca	37	chr14	52922163	52922163	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagggctggaagacttGcagcatatttggttgaccta	10	10	13	8	0	0	2	0	1	0	1	0	3	0	3	1	3	3	6	1	3	3	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020784	exon18	c.C1721A	p.A574E	AGACTTGCAGCAT	.	49	4	38	0	.	.	T	52922163	G	T	52922163	3	4	32	1	0	0	0	0	1	0	0	0	16857	1319	46	3	772	3	TXNDC16	14	52922163	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		52922163	54427377	61	4973											
WDR25	79446	broad.mit.edu;bcgsc.ca	37	chr14	100847912	100847916	+	Frame_Shift_Del	DEL	GTCTG	GTCTG	-																															ctctacgtgggcccgggagtGtctgagtttattcagccata																								novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	WDR25	NM_001161476	exon2	c.651_655del	p.217_219del	GGGAGTGTCTGAG	.	18	8	66	0	.	37	-	100847916	GTCTG	-	100847912	7	5	32	1	0	1	0	1	0	0	0	0	17342	1364	48	0	653	0	WDR25	14	100847912	Frame_Shift_Del	DEL	GTCTG	TCGA-ZH-A8Y5-01A-11D-A417-09	47925749	100847912	6501628	62	4974	44	2									
WDR25	79446	broad.mit.edu;bcgsc.ca	37	chr14	100847918	100847924	+	Frame_Shift_Del	DEL	GTTTATT	GTTTATT	-																															gtgggcccgggagtgtctgaGtttattcagccatatttgaa																								novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	WDR25,colon,carcinoma,+2,2	WDR25	NM_001161476	exon2	c.657_663del	p.219_221del	GTCTGAGTTTATT	.	15	9	65	0	.	37	-	100847924	GTTTATT	-	100847918	7	5	32	1	0	1	0	1	0	0	0	0	17342	1020	36	0	659	0	WDR25	14	100847918	Frame_Shift_Del	DEL	GTTTATT	TCGA-ZH-A8Y5-01A-11D-A417-09	6	100847918	6501622	63	4975	44	2									
AHNAK2	113146	hgsc.bcm.edu	37	chr14	105415064	105415064	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tttgggcaccttgaaactggGcatctgcagcttgggcaggt	7	11	14	9	0	1	1	0	1	1	0	1	1	1	1	1	4	3	5	1	4	1	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_138420	exon7	c.C6724T	p.P2242S	AACTGGGCATCTG	.	51	4	79	0	.	.	A	105415064	G	A	105415064	3	1	32	1	0	0	0	0	1	0	0	0	412	1203	42	3	10667	3	AHNAK2	14	105415064	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	4567146	105415064	1934476	64	4976											
MAGEL2	54551	hgsc.bcm.edu	37	chr15	23892486	23892486	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gatgggccatgggagctccgGgagctgaaggatgcaccatc	9	6	16	10	1	0	1	0	1	0	0	2	5	1	4	3	4	3	3	3	4	1	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_019066	exon1	c.C404A	p.P135H	GCTCCGGGAGCTG	.	70	34	94	0	.	.	T	23892486	G	T	23892486	3	4	32	1	0	0	0	0	1	0	0	0	9239	1232	43	3	3349	3	MAGEL2	15	23892486	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		23892486	78638906	65	4977											
MAPKBP1	23005	hgsc.bcm.edu	37	chr15	42113096	42113096	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caggacccagaagaagagggCgctgggttcagccaggtgtg	10	5	17	9	1	1	3	1	0	0	3	1	4	1	4	2	4	1	2	2	4	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	MAPKBP1,colon,carcinoma,0,1	MAPKBP1	NM_001128608	exon24	c.C2566T	p.R856C	AGAGGGCGCTGGG	.	24	2	22	0	.	0	T	42113096	C	T	42113096	3	4	32	1	0	0	0	0	1	0	0	0	9342	768	27	1	2656	1	MAPKBP1	15	42113096	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	18220610	42113096	60418296	66	4978											
PLA2G4F	255189	hgsc.bcm.edu	37	chr15	42446614	42446614	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgggcagggcttggggacGccgtgggcagccacagttgc	5	7	18	11	2	1	0	0	0	1	0	1	1	1	1	2	5	2	4	2	5	0	2	rs142310375	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PLA2G4F,right_lower_lobe,carcinoma,0,1	PLA2G4F	NM_213600	exon3	c.C227A	p.A76E	GGGGACGCCGTGG	.	26	2	31	0	.	0	T	42446614	G	T	42446614	3	4	32	1	0	0	0	0	1	0	0	0	12054	1087	38	2	2394	2	PLA2G4F	15	42446614	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	333518	42446614	60084778	67	4979											
KIAA1024	23251	broad.mit.edu	37	chr15	79749365	79749365	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agggaaccccagagtcgaaaGgaaccccacaagccaccctt	14	3	9	15	1	0	1	0	0	0	1	1	4	0	3	6	2	3	0	6	2	4	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	KIAA1024	NM_015206	exon2	c.G876T	p.K292N	TCGAAAGGAACCC	.	32	3	32	0	.	146	T	79749365	G	T	79749365	3	4	32	1	0	0	0	0	1	0	0	0	8247	991	35	3	878	3	KIAA1024	15	79749365	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	37302751	79749365	22782027	68	4980											
PKD1	5310	hgsc.bcm.edu	37	chr16	2160404	2160404	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggacccccagggatgggcgtGcagcggtcacagagcaccca	9	3	15	14	2	1	1	1	0	0	1	1	3	1	3	3	4	3	2	3	4	0	0	rs376144237		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_000296	exon15	c.C4764T	p.C1588C	GGGCGTGCAGCGG	.	52	4	61	0	.	.	A	2160404	G	A	2160404	2	1	32	1	0	0	0	0	0	0	0	1	12011	1311	46	3		3	PKD1	16	2160404	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		2160404	88194349	69	4981											
C16orf90	0	broad.mit.edu	37	chr16	3546141	3546141	+	RNA	DEL	A	A	-																															gcagagcgagactccgtctcAaaaaaaaaaaaaagttaaac																								rs200618809		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	C16orf90	.	.	.	.	CGTCTCAAAAAAA	.	7	1	7	0	.	16	-	3546141	A	-	3546141	6	5	32	0	1	1	0	1	0	0	0	0	1850	145	5	0		0	C16orf90	16	3546141	RNA	DEL	A	TCGA-ZH-A8Y5-01A-11D-A417-09	1385737	3546141	86808612	70	4982											
SALL1	6299	hgsc.bcm.edu	37	chr16	51173912	51173912	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctttcgtggtgaaagcccGgccacagatcttacacttaa	10	10	8	13	2	1	2	0	1	1	1	2	2	1	2	3	2	2	0	3	2	3	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SALL1,NS,carcinoma,0,2	SALL1	NM_002968	exon2	c.C2221A	p.R741R	AAGCCCGGCCACA	.	41	2	40	0	.	0	T	51173912	G	T	51173912	2	4	32	1	0	0	0	0	0	0	0	1	13862	1115	39	2		2	SALL1	16	51173912	Silent	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	47627771	51173912	39180841	71	4983											
FOXF1	2294	hgsc.bcm.edu	37	chr16	86544554	86544554	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	actactggaccatcgacccgGccagcgagttcatgttcgag	9	8	11	13	4	1	0	1	0	0	0	3	4	1	1	3	2	2	2	3	2	1	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	FOXF1_ENST00000262426,NS,carcinoma,0,2	FOXF1_ENST00000262426	NM_001451	exon1	c.G379A	p.A127T	GACCCGGCCAGCG	.	49	3	40	0	.	0	A	86544554	G	A	86544554	3	1	32	1	0	0	0	0	1	0	0	0	6039	1203	42	3	381	3	FOXF1	16	86544554	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	35370642	86544554	3810199	72	4984											
TP53	7157	hgsc.bcm.edu	37	chr17	7579316	7579316	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctcagggcaactgaccgtgCaagtcacagacttggctgtc	9	8	11	13	1	2	2	2	1	0	1	3	2	2	2	2	2	2	3	2	2	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	TP53_ENST00000413465,NS,carcinoma,+1,4	TP53_ENST00000413465	NM_000546	exon4	c.G371A	p.C124Y	ACCGTGCAAGTCA	.	47	2	94	0	.	+1	T	7579316	C	T	7579316	3	4	32	1	0	0	0	0	1	0	0	0	16442	710	25	3	931	3	TP53	17	7579316	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		7579316	73615894	73	4985											
WRAP53	55135	hgsc.bcm.edu;broad.mit.edu	37	chr17	7606344	7606344	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctagtgagtggcagcacgagCggggctgtctctgtgtggga	6	9	18	8	2	1	1	0	1	1	0	2	3	1	2	0	4	2	3	0	4	1	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	WRAP53,NS,carcinoma,0,1	WRAP53	NM_001143991	exon10	c.C1302T	p.S434S	CACGAGCGGGGCT	.	23	3	16	0	.	0	T	7606344	C	T	7606344	2	4	32	1	0	0	0	0	0	0	0	1	17460	767	27	1		1	WRAP53	17	7606344	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	27028	7606344	73588866	74	4986											
RHBDL3	162494	hgsc.bcm.edu	37	chr17	30621346	30621346	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tctacaatggggtgtcactaGgtcaatttgtactgcaggta	10	13	11	7	0	3	0	2	0	1	0	3	0	3	0	0	4	3	3	0	4	6	5	rs138890553		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	RHBDL3,NS,carcinoma,0,1	RHBDL3	NM_138328	exon5	c.G553T	p.G185C	TCACTAGGTCAAT	.	50	2	55	0	0.000	0	T	30621346	G	T	30621346	3	4	32	1	0	0	0	0	1	0	0	0	13373	1000	35	3	571	3	RHBDL3	17	30621346	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	23015002	30621346	50573864	75	4987											
PIP4K2B	8396	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	36925956	36925956	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gaagagaactacgtcaggatGttggacataaactcgttgaa	15	9	11	6	2	1	2	1	1	0	1	2	6	1	4	0	2	3	2	0	2	6	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_003559	exon10	c.C1239A	p.N413K	CAGGATGTTGGAC	.	42	4	67	0	.	.	T	36925956	G	T	36925956	3	4	32	1	0	0	0	0	1	0	0	0	11985	1368	48	3	15	3	PIP4K2B	17	36925956	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	6304610	36925956	44269254	76	4988											
TTC25	83538	broad.mit.edu	37	chr17	40101598	40101598	+	RNA	DEL	A	A	-																															taggaagactccctctctacAaaaaaaaaaaaaaaaaaatt																								rs35481109	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	TTC25	.	.	.	.	CTCTACAAAAAAA	.	6	1	7	0	-|1.000;|0.000	37	-	40101598	A	-	40101598	6	5	32	0	1	1	0	1	0	0	0	0	16755	145	5	0		0	TTC25	17	40101598	RNA	DEL	A	TCGA-ZH-A8Y5-01A-11D-A417-09	3175642	40101598	41093612	77	4989											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48684279	48684279	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgatgtccctgttcGttttggcctccaaggatggt	5	13	12	11	1	0	1	0	1	0	0	3	2	2	2	4	4	0	2	4	4	1	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001256360	exon24	c.G4441A	p.V1481I	CTGTTCGTTTTGG	.	33	9	28	0	.	.	A	48684279	G	A	48684279	3	1	32	1	0	0	0	0	1	0	0	0	2562	1145	40	1	4781	1	CACNA1G	17	48684279	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	8582681	48684279	32510931	78	4990											
LPIN2	9663	broad.mit.edu	37	chr18	2937759	2937759	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gggcgcctccgctaaggctgCgttgggaaggtggtcagcat	6	8	17	10	3	1	0	1	0	0	0	2	1	2	1	2	5	2	4	2	5	2	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	LPIN2	NM_014646	exon7	c.G1099T	p.A367S	AGGCTGCGTTGGG	.	22	3	49	0	.	75	A	2937759	C	A	2937759	3	1	32	1	0	0	0	0	1	0	0	0	8964	768	27	2	1647	2	LPIN2	18	2937759	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		2937759	75139489	79	4991											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	9254584	9254584	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tcttcagaataaaaagatttCtacttcatgttccgtcatcc	12	15	4	10	1	5	2	3	0	2	2	7	2	7	2	2	0	1	1	2	0	5	6	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_015208	exon9	c.C1319G	p.S440C	AGATTTCTACTTC	.	34	26	141	0	.	.	G	9254584	C	G	9254584	3	3	32	1	0	0	0	0	1	0	0	0	636	913	32	5	1349	5	ANKRD12	18	9254584	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	6316825	9254584	68822664	80	4992											
C18orf25	147339	hgsc.bcm.edu	37	chr18	43833705	43833705	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agcaagtgacaaaacatctgGcaatgcgccactcaatgaag	16	6	9	10	1	2	2	1	2	1	0	2	2	2	2	1	1	3	2	1	1	6	0	rs370787556		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,1	.	NM_145055	exon4	c.G941C	p.G314A	CATCTGGCAATGC	.	101	5	90	1	.	27	C	43833705	G	C	43833705	3	2	32	1	0	0	0	0	1	0	0	0	1910	1203	42	5	951	5	C18orf25	18	43833705	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	34579121	43833705	34243543	81	4993											
ZBTB7A	51341	hgsc.bcm.edu	37	chr19	4053996	4053996	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agcggaccttgcagatgttgCactcgtagggcttctcgccc	6	10	12	13	3	1	1	0	0	1	1	3	2	1	2	2	2	3	5	2	2	1	4	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZBTB7A,colon,carcinoma,0,1	ZBTB7A	NM_015898	exon2	c.G1235A	p.C412Y	ATGTTGCACTCGT	.	34	2	36	0	.	0	T	4053996	C	T	4053996	3	4	32	1	0	0	0	0	1	0	0	0	17612	710	25	3	527	3	ZBTB7A	19	4053996	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09		4053996	55074987	82	4994											
PTPRS	5802	hgsc.bcm.edu	37	chr19	5218452	5218452	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggagtctggaagttaatgcGtctcatttccacagggtcct	8	13	11	9	1	2	0	1	0	2	0	5	2	4	2	2	3	1	1	2	3	2	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PTPRS,colon,carcinoma,+1,1	PTPRS	NM_002850	exon25	c.C4027A	p.R1343S	TAATGCGTCTCAT	.	32	2	39	1	.	+1	T	5218452	G	T	5218452	3	4	32	1	0	0	0	0	1	0	0	0	12863	1145	40	2	1875	2	PTPRS	19	5218452	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	1164456	5218452	53910531	83	4995											
ZNF85	7639	hgsc.bcm.edu	37	chr19	21132556	21132556	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gcttttaaacactcttcaacCcttactaaacataagataat	16	13	2	10	0	2	1	1	0	1	1	2	1	2	1	1	0	4	1	1	0	8	7	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZNF85,NS,carcinoma,0,1	ZNF85	NM_001256171	exon5	c.C1326A	p.T442T	TTCAACCCTTACT	.	39	3	61	0	.	0	A	21132556	C	A	21132556	2	1	32	1	0	0	0	0	0	0	0	1	18237	610	22	3		3	ZNF85	19	21132556	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	15914104	21132556	37996427	84	4996											
DPY19L3	147991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	32930122	32930122	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	tacatatttcctgagaccaaActtacagcctctttctgaag	12	13	5	11	0	2	2	0	2	2	1	3	3	3	2	3	0	4	0	3	0	5	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001172774	exon7	c.A701G	p.N234S	GACCAAACTTACA	.	80	11	118	0	.	.	G	32930122	A	G	32930122	3	3	32	1	0	0	0	0	1	0	0	0	4768	43	2	4	723	4	DPY19L3	19	32930122	Missense_Mutation	SNP	A	TCGA-ZH-A8Y5-01A-11D-A417-09	11797566	32930122	26198861	85	4997											
SLC7A10	56301	ucsc.edu	37	chr19	33701909	33701909	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgctccgggcccagCagccccactggacagttctc	6	7	9	19	1	1	0	0	0	1	0	4	1	3	1	6	2	3	3	6	2	0	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SLC7A10	.	.	.	.	GCCCAGCAGCCCC	.	35	4	23	0	.	43	T	33701909	C	T	33701909	2	4	32	1	0	0	0	0	0	0	0	1	14748	725	25	3		3	SLC7A10	19	33701909	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	771787	33701909	25427074	86	4998											
ZNF30	90075	hgsc.bcm.edu	37	chr19	35434870	35434870	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtatggacagcttactcgaCatcagagtattcatactggt	11	13	9	8	1	2	1	2	0	0	1	3	3	2	2	0	2	3	3	0	2	4	5	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZNF30,colon,carcinoma,0,1	ZNF30	NM_001099438	exon5	c.C1003T	p.H335Y	ACTCGACATCAGA	.	35	2	41	0	.	0	T	35434870	C	T	35434870	3	4	32	1	0	0	0	0	1	0	0	0	17887	478	17	3	1017	3	ZNF30	19	35434870	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	1732961	35434870	23694113	87	4999											
FFAR3	2865	broad.mit.edu;bcgsc.ca	37	chr19	35850647	35850647	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctccgggttccaagcCgactttcatgagctgctgag	6	11	10	14	2	1	2	1	2	0	0	5	3	5	2	5	1	3	3	5	1	1	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	FFAR3	NM_005304	exon2	c.C855T	p.A285A	CCAAGCCGACTTT	.	91	28	113	1	.	40	T	35850647	C	T	35850647	2	4	32	1	0	0	0	0	0	0	0	1	5862	639	23	1		1	FFAR3	19	35850647	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	415777	35850647	23278336	88	5000											
U2AF1L4	199746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36233568	36233568	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggggctttgaggagaggtcCtgccaggaacatctgtccct	7	9	15	10	0	1	2	0	1	1	1	3	4	3	3	3	5	2	1	3	5	1	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_144987	exon6	c.G540A	p.Q180Q	GAGGTCCTGCCAG	.	41	16	31	0	.	.	T	36233568	C	T	36233568	2	4	32	1	0	0	0	0	0	0	0	1	16883	680	24	3		3	U2AF1L4	19	36233568	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	382921	36233568	22895415	89	5001											
DKKL1	27120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49878126	49878126	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ctggagggcggccactggctCagcgagaagcgacaccgcct	8	4	15	14	4	1	1	1	0	0	1	1	4	1	2	3	4	2	1	3	4	1	0	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_014419	exon5	c.C570T	p.L190L	CTGGCTCAGCGAG	.	29	11	49	0	.	.	T	49878126	C	T	49878126	2	4	32	1	0	0	0	0	0	0	0	1	4576	813	29	3		3	DKKL1	19	49878126	Silent	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	13644558	49878126	9250857	90	5002											
LIM2	3982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51890594	51890594	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggccctggtgggcgaaggacCctgacagccggtactgcatc	7	6	15	13	2	0	1	0	1	0	0	1	3	0	2	3	5	3	2	3	5	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001161748	exon2	c.G104A	p.G35E	AAGGACCCTGACA	.	23	8	20	0	.	.	T	51890594	C	T	51890594	3	4	32	1	0	0	0	0	1	0	0	0	8835	623	22	3	559	3	LIM2	19	51890594	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	2012468	51890594	7238389	91	5003											
ZNF649	65251	broad.mit.edu	37	chr19	52395140	52395140	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgctgcagatgatcatcagcTttctcaatttctaagagaga	12	13	8	8	0	4	4	3	1	2	3	5	5	4	4	0	0	3	3	0	0	2	3	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ZNF649	NM_023074	exon5	c.A249C	p.K83N	ATCAGCTTTCTCA	.	34	3	35	0	.	72	G	52395140	T	G	52395140	3	3	32	1	0	0	0	0	1	0	0	0	18121	1606	56	4	1272	4	ZNF649	19	52395140	Missense_Mutation	SNP	T	TCGA-ZH-A8Y5-01A-11D-A417-09	504546	52395140	6733843	92	5004											
NLRP8	126205	broad.mit.edu	37	chr19	56467321	56467321	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaatgattatcataaagttGtcttgagaattggcaacaac	16	13	7	5	0	2	2	1	2	1	1	2	3	2	2	0	1	2	2	0	1	8	6	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	NLRP8	NM_176811	exon3	c.G1897T	p.V633F	AAAGTTGTCTTGA	.	57	3	57	1	.	225	T	56467321	G	T	56467321	3	4	32	1	0	0	0	0	1	0	0	0	10530	1377	48	3	1907	3	NLRP8	19	56467321	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09	4072181	56467321	2661662	93	5005											
ARFGEF2	10564	hgsc.bcm.edu	37	chr20	47569405	47569405	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gctgaacgtcattttcacccGcatggaaaaccaagtggtga	12	9	10	10	2	2	2	2	2	0	0	2	3	2	3	2	2	2	2	2	2	4	2	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARFGEF2,NS,carcinoma,-1,1	ARFGEF2	NM_006420	exon5	c.G587A	p.R196H	TCACCCGCATGGA	.	62	3	25	0	.	-1	A	47569405	G	A	47569405	3	1	32	1	0	0	0	0	1	0	0	0	850	1087	38	1	605	1	ARFGEF2	20	47569405	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		47569405	15456115	94	5006											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	60887332	60887332	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccacgttcgagagcgccaggCgaaggaagccgtggccatgg	9	4	16	12	5	0	1	0	0	0	1	1	4	0	2	4	4	2	1	4	4	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005560	exon69	c.G9401T	p.R3134L	GCCAGGCGAAGGA	.	22	7	15	0	.	.	A	60887332	C	A	60887332	3	1	32	1	0	0	0	0	1	0	0	0	8648	768	27	2	1734	2	LAMA5	20	60887332	Missense_Mutation	SNP	C	TCGA-ZH-A8Y5-01A-11D-A417-09	13317927	60887332	2138188	95	5007											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	44189140	44189140	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	tgctgcattccctgcagagcGaccgtgagaagtcagaaggc	10	7	13	11	2	1	3	1	1	0	3	2	5	2	3	2	1	4	3	2	1	2	1	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_002606	exon17	c.G1465A	p.D489N	CAGAGCGACCGTG	.	28	15	40	0	.	.	A	44189140	G	A	44189140	3	1	32	1	0	0	0	0	1	0	0	0	11702	1058	37	1	1611	1	PDE9A	21	44189140	Missense_Mutation	SNP	G	TCGA-ZH-A8Y5-01A-11D-A417-09		44189140	3940755	96	5008											
H6PD	9563	bcgsc.ca	37	chr1	9305083	9305083	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgtctccataatcctGctgggagcaactggggacct	9	9	12	11	0	1	0	0	0	1	0	3	3	2	3	3	4	3	2	3	4	2	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	H6PD	NM_004285	exon2	c.G90T	p.L30L	AATCCTGCTGGGA	.	18	3	18	0	.	71	T	9305083	T	T	9305083	2	4	33	1	0	0	0	0	0	0	0	1	6977	1306	46	3		3	H6PD	1	9305083	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		9305083	239945538	1	5009											
FAM131C	348487	ucsc.edu	37	chr1	16385007	16385007	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	agggagcccggggggtgggtCccaccctcgggtccttgggc	3	6	19	13	2	0	0	0	0	0	0	3	1	2	1	4	7	1	0	4	7	0	1	rs28667975		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	FAM131C	NM_182623	exon7	c.G768A	p.G256G	GTGGGTCCCACCC	.	83	10	65	0	C|1.000;|0.000	21	T	16385007	C	T	16385007	2	4	33	1	0	0	0	0	0	0	0	1	5472	842	30	3		3	FAM131C	1	16385007	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	7079924	16385007	232865614	2	5010											
PADI6	353238	broad.mit.edu	37	chr1	17725151	17725154	+	RNA	DEL	CCCC	CCCC	-																															gagctctccttgctcccccgCccccccccccacccacccac																								novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	PADI6	.	.	.	.	CCCCCGCCCCCCC	.	12	2	8	0	.	51	-	17725154	CCCC	-	17725151	6	5	33	0	1	1	0	1	0	0	0	0	11428	754	26	0		0	PADI6	1	17725151	RNA	DEL	CCCC	TCGA-ZH-A8Y6-01A-11D-A417-09	1340144	17725151	231525470	3	5011											
ARID1A	8289	hgsc.bcm.edu	37	chr1	27106011	27106011	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tcccggcctcacgcaccctgCccaccagcccctcggaagca	7	4	8	22	3	1	0	1	0	0	0	3	1	2	1	7	2	3	2	7	2	1	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_006015	exon20	c.C5622T	p.C1874C	ACCCTGCCCACCA	.	95	4	64	0	.	.	T	27106011	C	T	27106011	2	4	33	1	0	0	0	0	0	0	0	1	910	747	26	3		3	ARID1A	1	27106011	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	9380860	27106011	222144610	4	5012											
EDN2	1907	hgsc.bcm.edu;bcgsc.ca	37	chr1	41949743	41949743	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	agtgttcacccagatgatgtCcaagtggcagaagtagacgc	12	8	12	9	1	1	4	1	1	0	3	2	4	2	4	2	1	0	3	2	1	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001956	exon2	c.G196A	p.D66N	TGATGTCCAAGTG	.	68	4	51	0	.	.	T	41949743	C	T	41949743	3	4	33	1	0	0	0	0	1	0	0	0	4943	855	30	3	356	3	EDN2	1	41949743	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	14843732	41949743	207300878	5	5013											
KNCN	148930	hgsc.bcm.edu	37	chr1	47013133	47013133	+	RNA	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgcagtccagaaagaaaggCcagggcaggagcctgaaaca	15	3	13	10	0	0	3	0	1	0	2	1	4	1	4	3	3	3	2	3	3	3	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	.	.	.	.	GAAAGGCCAGGGC	.	69	4	46	0	.	.	T	47013133	C	T	47013133	1	4	33	0	1	0	0	0	0	0	0	0	8468	754	26	3		3	KNCN	1	47013133	RNA	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	5063390	47013133	202237488	6	5014											
LRRIQ3	127255	hgsc.bcm.edu;bcgsc.ca	37	chr1	74648427	74648427	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	acatagtgagggcaatgaggGttggacaggcagataataca	15	7	14	5	0	0	3	0	2	0	1	0	4	0	4	0	4	1	3	0	4	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001105659	exon3	c.C368A	p.T123N	ATGAGGGTTGGAC	.	100	4	90	0	.	.	T	74648427	G	T	74648427	3	4	33	1	0	0	0	0	1	0	0	0	9075	1261	44	3	1530	3	LRRIQ3	1	74648427	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	27635294	74648427	174602194	7	5015											
FAM73A	374986	hgsc.bcm.edu;bcgsc.ca	37	chr1	78338699	78338699	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ttcccagcagatcccagatgGattttttgcccatttttatg	8	16	7	10	0	0	2	0	0	0	2	2	3	2	3	3	1	2	1	3	1	1	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001270384	exon15	c.G1577T	p.G526V	CAGATGGATTTTT	.	98	4	97	0	.	.	T	78338699	G	T	78338699	3	4	33	1	0	0	0	0	1	0	0	0	5651	1174	41	3	1632	3	FAM73A	1	78338699	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	3690272	78338699	170911922	8	5016											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94650575	94650575	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttctgatgaccacaaataatGactaaattttccaaacactt	16	13	3	9	0	1	3	0	3	1	0	2	3	2	3	2	0	1	0	2	0	5	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_004815	exon18	c.C1962T	p.V654V	AATAATGACTAAA	.	91	39	64	0	.	.	A	94650575	G	A	94650575	2	1	33	1	0	0	0	0	0	0	0	1	875	1277	45	3		3	ARHGAP29	1	94650575	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	16311876	94650575	154600046	9	5017											
AGL	178	hgsc.bcm.edu	37	chr1	100346961	100346961	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	attgcagccaggtgtgctatCagtaaacttcatcaggagct	11	11	10	9	0	3	0	3	0	0	0	3	1	3	1	1	2	5	4	1	2	3	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	AGL,NS,carcinoma,0,1	AGL	NM_000644	exon16	c.C2115T	p.I705I	TGCTATCAGTAAA	.	36	2	45	0	.	0	T	100346961	C	T	100346961	2	4	33	1	0	0	0	0	0	0	0	1	381	816	29	3		3	AGL	1	100346961	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	5696386	100346961	148903660	10	5018											
TDRD10	126668	hgsc.bcm.edu	37	chr1	154493819	154493819	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ctttgcatttgtagatctggGctccatgcagaaagtgacac	10	12	10	9	0	1	3	0	1	1	2	2	3	2	3	1	1	2	4	1	1	2	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_182499	exon6	c.G233T	p.G78V	ATCTGGGCTCCAT	.	37	3	44	0	.	.	T	154493819	G	T	154493819	3	4	33	1	0	0	0	0	1	0	0	0	15790	1203	42	3	251	3	TDRD10	1	154493819	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	54146858	154493819	94756802	11	5019											
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842238	154842238	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgctgctgctgcTgctgaagctgcggaggctga	4	10	16	11	1	0	2	0	2	0	0	0	3	0	3	0	2	9	10	0	2	1	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001204087	exon1	c.A203T	p.Q68L	TGCTGCTGCTGAA	.	36	6	31	0	.	.	A	154842238	T	A	154842238	3	1	33	1	0	0	0	0	1	0	0	0	8124	1580	55	5	2046	5	KCNN3	1	154842238	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	348419	154842238	94408383	12	5020											
KIAA0907	22889	hgsc.bcm.edu	37	chr1	155896523	155896523	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agacaactgagcgatgggtgCtggctggtgatagacagtta	11	9	15	6	1	0	4	0	2	0	2	0	5	0	4	0	3	3	3	0	3	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	KIAA0907,NS,carcinoma,0,1	KIAA0907	NM_014949	exon6	c.G625A	p.A209T	TGGGTGCTGGCTG	.	75	3	67	0	.	0	T	155896523	C	T	155896523	3	4	33	1	0	0	0	0	1	0	0	0	8241	797	28	3	1255	3	KIAA0907	1	155896523	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1054285	155896523	93354098	13	5021											
ETV3L	440695	bcgsc.ca	37	chr1	157062558	157062558	+	Silent	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aagacctccctgggatccagGcctccctttgcctccatcat	7	10	7	17	0	1	1	1	0	0	1	5	2	5	2	7	2	1	0	7	2	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	ETV3L	NM_001004341	exon5	c.C969A	p.G323G	ATCCAGGCCTCCC	.	54	4	51	0	.	73	T	157062558	T	T	157062558	2	4	33	1	0	0	0	0	0	0	0	1	5308	1190	42	3		3	ETV3L	1	157062558	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	1166035	157062558	92188063	14	5022											
UFC1	51506	hgsc.bcm.edu	37	chr1	161123896	161123896	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agcgactgaaggaggaatatCagtcccttatccgggttagt	11	10	12	8	2	1	1	1	1	0	0	3	4	3	3	2	3	1	1	2	3	5	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_016406	exon1	c.C109T	p.Q37X	GAATATCAGTCCC	.	82	4	43	0	.	.	T	161123896	C	T	161123896	4	4	33	1	0	0	0	0	0	1	0	0	16994	827	29	3	111	3	UFC1	1	161123896	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	4061338	161123896	88126725	15	5023											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	233270846	233270846	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aagtggaaaaagatgacagtGaagctcaagttaataaactg	19	8	10	4	0	1	3	1	2	0	1	1	4	1	4	0	1	2	2	0	1	8	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_014801	exon21	c.C3750T	p.F1250F	GACAGTGAAGCTC	.	100	40	77	0	.	.	A	233270846	G	A	233270846	2	1	33	1	0	0	0	0	0	0	0	1	11639	1281	45	3		3	PCNXL2	1	233270846	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	72146950	233270846	15979775	16	5024											
LYST	1130	hgsc.bcm.edu	37	chr1	235972607	235972607	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcataaaatgagaatattcaCatcgtctgtgcctttttctt	11	16	6	8	1	3	1	1	1	2	1	4	2	3	1	1	0	1	1	1	0	4	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LYST,NS,carcinoma,0,1	LYST	NM_000081	exon5	c.G1511A	p.C504Y	TATTCACATCGTC	.	31	2	30	0	.	0	T	235972607	C	T	235972607	3	4	33	1	0	0	0	0	1	0	0	0	9174	478	17	3	10090	3	LYST	1	235972607	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	2701761	235972607	13278014	17	5025											
MTR	4548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237049616	237049616	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ggagatacttacccttaagtCaagccagaaaaagtggtttc	14	10	9	8	0	1	2	1	0	0	2	2	3	1	2	2	2	3	1	2	2	6	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000254	exon27	c.C2800G	p.Q934E	TTAAGTCAAGCCA	.	58	20	66	0	.	.	G	237049616	C	G	237049616	3	3	33	1	0	0	0	0	1	0	0	0	10006	827	29	5	2906	5	MTR	1	237049616	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1077009	237049616	12201005	18	5026											
RYR2	6262	hgsc.bcm.edu	37	chr1	237880647	237880647	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaccaggagctcattgctctGgccaaaaatcgatttagcct	11	10	9	11	1	2	0	1	0	1	0	3	3	2	1	3	2	3	2	3	2	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RYR2,NS,carcinoma,0,1	RYR2	NM_001035	exon72	c.G10473T	p.L3491L	TGCTCTGGCCAAA	.	73	3	42	0	.	0	T	237880647	G	T	237880647	2	4	33	1	0	0	0	0	0	0	0	1	13821	1335	47	3		3	RYR2	1	237880647	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	831031	237880647	11369974	19	5027											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	31010106	31010106	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaacgtccggcccatgctcAggcagtgatcccgcaaggtg	9	7	12	13	3	1	1	1	1	0	0	3	1	3	1	3	3	2	3	3	3	3	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_144575	exon2	c.T86A	p.L29Q	ATGCTCAGGCAGT	.	52	4	31	0	.	.	T	31010106	A	T	31010106	3	4	33	1	0	0	0	0	1	0	0	0	2644	188	7	5	2007	5	CAPN13	2	31010106	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09		31010106	212189267	20	5028											
NRXN1	9378	hgsc.bcm.edu	37	chr2	50723152	50723152	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gatatcatcacgttgtgccaCtgattgtcattgagaggttt	9	15	10	7	1	3	2	3	2	0	1	3	4	3	2	1	1	1	2	1	1	1	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001135659	exon16	c.G3081A	p.Q1027Q	GTGCCACTGATTG	.	89	4	70	0	.	.	T	50723152	C	T	50723152	2	4	33	1	0	0	0	0	0	0	0	1	10713	564	20	3		3	NRXN1	2	50723152	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	19713046	50723152	192476221	21	5029											
C2orf42	54980	hgsc.bcm.edu	37	chr2	70392715	70392715	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cctatagatattctttgttgCagggcatcaaaaaatgactg	13	13	8	7	0	2	2	1	1	1	1	2	2	2	2	1	1	1	3	1	1	6	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_017880	exon7	c.G1197A	p.L399L	TTGTTGCAGGGCA	.	101	4	77	0	.	.	T	70392715	C	T	70392715	2	4	33	1	0	0	0	0	0	0	0	1	2180	697	25	3		3	C2orf42	2	70392715	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	19669563	70392715	172806658	22	5030											
TET3	200424	ucsc.edu	37	chr2	74274265	74274265	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctccgggctccctcatggccTgtggttcctcctgaagagca	5	10	11	15	1	1	2	1	1	0	1	5	2	5	2	5	3	1	3	5	3	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	TET3	NM_144993	exon1	c.T816C	p.P272P	ATGGCCTGTGGTT	.	38	4	29	0	.	101	C	74274265	T	C	74274265	2	2	33	1	0	0	0	0	0	0	0	1	15830	1567	55	4		4	TET3	2	74274265	Silent	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	3881550	74274265	168925108	23	5031											
RNF103	7844	hgsc.bcm.edu;bcgsc.ca	37	chr2	86831626	86831626	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagcaatcgggtggaaGaggtagctggtgtaccagtc	13	7	15	6	1	0	2	0	0	0	2	2	3	0	3	1	4	3	4	1	4	6	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_005667	exon4	c.C1398A	p.L466L	GTGGAAGAGGTAG	.	40	4	33	0	.	.	T	86831626	G	T	86831626	2	4	33	1	0	0	0	0	0	0	0	1	13475	929	33	3		3	RNF103	2	86831626	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	12557361	86831626	156367747	24	5032											
UGGT1	56886	hgsc.bcm.edu	37	chr2	128884954	128884954	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gtatttcaagggaactttagGattacaacctggagattcag	13	12	10	6	0	2	1	2	0	0	1	2	4	2	3	1	3	3	1	1	3	6	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	UGGT1,NS,carcinoma,0,1	UGGT1	NM_020120	exon12	c.G1154T	p.G385V	CTTTAGGATTACA	.	85	4	67	0	.	0	T	128884954	G	T	128884954	3	4	33	1	0	0	0	0	1	0	0	0	17001	1174	41	3	1200	3	UGGT1	2	128884954	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	42053328	128884954	114314419	25	5033											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162807340	162807340	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	acagctgtcatcatcaacagGaaagagcataagctaaaggt	17	7	9	8	0	3	1	3	0	0	1	3	2	3	2	0	2	4	3	0	2	5	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001178015	exon19	c.G2523A	p.R841R	CAACAGGAAAGAG	.	67	30	68	0	.	.	A	162807340	G	A	162807340	2	1	33	1	0	0	0	0	0	0	0	1	14706	1165	41	3		3	SLC4A10	2	162807340	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	33922386	162807340	80392033	26	5034											
ABCB11	8647	bcgsc.ca	37	chr2	169792945	169792945	+	Splice_Site	SNP	T	C	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgatctgagagccggcagccTgcaaaccaaaaagcaatcaa	16	4	9	12	2	2	1	1	1	1	1	2	3	2	1	3	1	5	3	3	1	5	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	ABCB11	NM_003742	exon23	c.2611-2A>G	.	GCAGCCTGCAAAC	.	55	4	48	0	.	136	C	169792945	C	C	169792945	5	2	33	1	0	0	0	0	0	0	1	0	42	1594	55	4	1384	4	ABCB11	2	169792945	Splice_Site	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	6985605	169792945	73406428	27	5035											
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	chr2	179529380	179529380	+	Splice_Site	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	taagcttccagcaagatataCcttcatcaggaaggacttca	14	10	7	10	0	3	1	3	0	0	1	4	3	4	3	2	2	3	2	2	2	5	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001267550	exon168	c.36202+1G>A	.	GATATACCTTCAT	.	86	4	75	0	.	.	T	179529380	C	T	179529380	5	4	33	1	0	0	0	0	0	0	1	0	16797	522	18	3		3	TTN	2	179529380	Splice_Site	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	9736435	179529380	63669993	28	5036											
NBEAL1	65065	hgsc.bcm.edu;bcgsc.ca	37	chr2	204000456	204000456	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	catcaaatatcacagcaagtGggttggcaagacaccttagt	14	9	9	9	0	2	1	2	0	0	1	2	1	2	1	1	2	1	3	1	2	5	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001114132	exon27	c.G3783T	p.V1261V	GCAAGTGGGTTGG	.	91	4	100	0	.	.	T	204000456	G	T	204000456	2	4	33	1	0	0	0	0	0	0	0	1	10236	1335	47	3		3	NBEAL1	2	204000456	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	24471076	204000456	39198917	29	5037											
SLC16A14	151473	hgsc.bcm.edu	37	chr2	230914527	230914527	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	aatgcacgtttgcagcatagGcactcaacacccagcccagg	12	6	9	14	1	1	0	1	0	0	0	1	0	1	0	2	2	5	5	2	2	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_152527	exon3	c.C353T	p.A118V	GCATAGGCACTCA	.	87	4	75	0	.	.	A	230914527	G	A	230914527	3	1	33	1	0	0	0	0	1	0	0	0	14462	1203	42	3	1191	3	SLC16A14	2	230914527	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	26914071	230914527	12284846	30	5038											
SP100	6672	hgsc.bcm.edu	37	chr2	231314943	231314943	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gggatgctggaagggagatgCcctgcccgttgccctgtgat	6	9	16	10	1	0	2	0	1	0	1	0	5	0	4	3	3	4	2	3	3	1	1	rs368340530	alternate_allele	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	SP100_ENST00000340126,mouth,carcinoma,0,2	SP100_ENST00000340126	NM_001206702	exon8	c.C793A	p.P265T	GAGATGCCCTGCC	.	38	2	29	0	.	0	A	231314943	C	A	231314943	3	1	33	1	0	0	0	0	1	0	0	0	15014	739	26	3	823	3	SP100	2	231314943	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	400416	231314943	11884430	31	5039											
GIGYF2	26058	hgsc.bcm.edu	37	chr2	233712228	233712230	+	In_Frame_Del	DEL	CAG	CAG	-																															gtcagcagcagcagctgccaCagcagcagcagcagcagccg																								rs376678075		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.,9	.	NM_001103147	exon29	c.3693_3695del	p.1231_1232del	CTGCCACAGCAGC	.	57	0	36	0	.	288	-	233712230	CAG	-	233712228	7	5	33	1	0	1	0	1	0	0	0	0	6420	479	17	0	3799	0	GIGYF2	2	233712228	In_Frame_Del	DEL	CAG	TCGA-ZH-A8Y6-01A-11D-A417-09	2397285	233712228	9487145	32	5040											
BRPF1	7862	hgsc.bcm.edu	37	chr3	9785550	9785550	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggatgggcagacagatagtgCggcagaggagagcagcagcc	12	3	18	8	1	0	4	0	0	0	4	0	6	0	5	1	4	4	4	1	4	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	BRPF1,colon,carcinoma,0,1	BRPF1	NM_001003694	exon8	c.C2600T	p.A867V	ATAGTGCGGCAGA	.	40	2	26	0	.	0	T	9785550	C	T	9785550	3	4	33	1	0	0	0	0	1	0	0	0	1522	768	27	1	2626	1	BRPF1	3	9785550	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09		9785550	188236880	33	5041											
IRAK2	3656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	10268072	10268072	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	caggtgttggccgaggtcctCacgggcatccctgcaatgga	7	8	14	12	2	1	0	1	0	0	0	3	2	3	1	3	5	1	3	3	5	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001570	exon10	c.C1227T	p.L409L	GGTCCTCACGGGC	.	53	26	36	0	.	.	T	10268072	C	T	10268072	2	4	33	1	0	0	0	0	0	0	0	1	7867	813	29	3		3	IRAK2	3	10268072	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	482522	10268072	187754358	34	5042											
IQSEC1	9922	hgsc.bcm.edu	37	chr3	12942851	12942851	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	accggtgggtgggggggtggCcagggctggggctgagggca	4	5	25	7	1	0	1	0	1	0	0	0	1	0	1	2	10	0	3	2	10	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.,1	.	NM_001134382	exon15	c.2976+1G>C	.	GGGTGGCCAGGGC	.	5	2	9	1	.	88	G	12942851	C	G	12942851	5	3	33	1	0	0	0	0	0	0	1	0	7861	739	26	5	421	5	IQSEC1	3	12942851	Splice_Site	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	2674779	12942851	185079579	35	5043											
CCK	885	broad.mit.edu	37	chr3	42304951	42304951	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcttgccagcagggcgcccaGgtgcgctcgggactcgccat	5	7	14	15	4	1	0	0	0	1	0	3	1	1	1	3	3	3	2	3	3	0	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	CCK	NM_000729	exon4	c.C172A	p.L58M	CGCCCAGGTGCGC	.	37	3	26	0	.	15	T	42304951	G	T	42304951	3	4	33	1	0	0	0	0	1	0	0	0	2899	991	35	3	183	3	CCK	3	42304951	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	29362100	42304951	155717479	36	5044											
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu	37	chr3	48625832	48625832	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccccagggctggcggagcctCaggcgctggagagaaagctc	8	4	16	13	2	1	1	1	0	0	1	2	4	1	3	3	5	2	3	3	5	1	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000094	exon20	c.G2593A	p.E865K	GAGCCTCAGGCGC	.	16	5	9	0	.	.	T	48625832	C	T	48625832	3	4	33	1	0	0	0	0	1	0	0	0	3727	835	29	3	6637	3	COL7A1	3	48625832	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	6320881	48625832	149396598	37	5045											
MST1	4485	hgsc.bcm.edu	37	chr3	49725198	49725198	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ctcaccggcagtccattaagGgcccacagcgaccagcacac	11	4	9	17	2	1	0	1	0	0	0	2	1	2	0	4	2	2	2	4	2	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	MST1,trunk,malignant_melanoma,0,1	MST1	NM_020998	exon2	c.C227T	p.P76L	ATTAAGGGCCCAC	.	61	4	42	0	.	0	A	49725198	G	A	49725198	3	1	33	1	0	0	0	0	1	0	0	0	9938	1232	43	3	2018	3	MST1	3	49725198	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	1099366	49725198	148297232	38	5046											
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	57283498	57283498	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	aggaggcctggccatggacaTagacaactgttcagtgatgg	11	8	14	8	0	1	2	1	1	0	1	1	4	1	4	2	5	1	1	2	5	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_012096	exon11	c.T974G	p.I325R	TGGACATAGACAA	.	97	6	60	0	.	.	G	57283498	T	G	57283498	3	3	33	1	0	0	0	0	1	0	0	0	814	1406	49	4	1016	4	APPL1	3	57283498	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	7558300	57283498	140738932	39	5047											
DNASE1L3	1776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58190532	58190532	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	gaaccagaccacaaagggctCcctggaaaacacatctgcgt	14	5	9	13	1	1	1	0	0	1	1	2	3	2	2	3	2	3	1	3	2	4	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_004944	exon4	c.G397C	p.E133Q	AGGGCTCCCTGGA	.	51	23	58	0	.	.	G	58190532	C	G	58190532	3	3	33	1	0	0	0	0	1	0	0	0	4690	864	30	5	540	5	DNASE1L3	3	58190532	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	907034	58190532	139831898	40	5048											
SLC25A26	115286	hgsc.bcm.edu;bcgsc.ca	37	chr3	66312519	66312519	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tctgaagtggttaagcagagGgcacaggtatctgcttctac	10	11	12	8	0	3	2	0	1	3	1	3	2	3	2	0	3	3	5	0	3	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_173471	exon5	c.G345T	p.R115S	GCAGAGGGCACAG	.	70	4	64	0	.	.	T	66312519	G	T	66312519	3	4	33	1	0	0	0	0	1	0	0	0	14544	1223	43	3	161	3	SLC25A26	3	66312519	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	8121987	66312519	131709911	41	5049											
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	100951689	100951689	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	attcaagcagaagtcaggctGtaggtcacagagactctgac	13	8	11	9	0	4	3	3	1	1	2	4	4	4	3	0	2	1	3	0	2	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_016247	exon15	c.C3169A	p.Q1057K	CAGGCTGTAGGTC	.	47	4	44	0	.	.	T	100951689	G	T	100951689	3	4	33	1	0	0	0	0	1	0	0	0	7773	1386	48	3	576	3	IMPG2	3	100951689	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	34639170	100951689	97070741	42	5050											
TM4SF4	7104	hgsc.bcm.edu	37	chr3	149216522	149216522	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaacagggattatctcaatGatgaggccttatggaacaag	14	9	10	8	0	1	2	1	2	1	0	2	4	1	4	2	3	2	0	2	3	6	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	TM4SF4,NS,carcinoma,0,1	TM4SF4	NM_004617	exon4	c.G415T	p.D139Y	CTCAATGATGAGG	.	41	2	51	0	.	0	T	149216522	G	T	149216522	3	4	33	1	0	0	0	0	1	0	0	0	16030	1290	45	3	429	3	TM4SF4	3	149216522	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	48264833	149216522	48805908	43	5051											
FAM194A	131831	hgsc.bcm.edu	37	chr3	150421519	150421519	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cccccaccaactcctcctccAccacctcctcctcctcctcc	5	8	0	28	0	0	0	0	0	0	0	8	0	8	0	13	0	1	0	13	0	1	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	FAM194A,NS,carcinoma,0,1	FAM194A	NM_152394	exon1	c.T167A	p.V56E	TCCTCCACCACCT	.	12	3	10	1	.	0	T	150421519	A	T	150421519	3	4	33	1	0	0	0	0	1	0	0	0	5558	159	6	5	1880	5	FAM194A	3	150421519	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	1204997	150421519	47600911	44	5052											
AADAC	13	bcgsc.ca	37	chr3	151545859	151545859	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gggttcaggtgactcataacCatgttgaggatggattccat	10	12	12	7	0	2	2	2	2	0	0	3	4	3	4	2	4	1	2	2	4	1	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	AADAC	NM_001086	exon5	c.C1099A	p.H367N	CATAACCATGTTG	.	58	4	45	0	.	49	A	151545859	A	A	151545859	3	1	33	1	0	0	0	0	1	0	0	0	10	594	21	3	1117	3	AADAC	3	151545859	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1124340	151545859	46476571	45	5053											
STBD1	8987	hgsc.bcm.edu	37	chr4	77230789	77230789	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatggacaatggaagaagcaCtttggtggaagcaagaggtc	15	7	14	5	0	0	2	0	0	0	2	1	5	0	5	0	5	2	2	0	5	6	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	STBD1,NS,carcinoma,0,1	STBD1	NM_003943	exon2	c.C713T	p.T238I	GAAGCACTTTGGT	.	47	2	25	0	.	0	T	77230789	C	T	77230789	3	4	33	1	0	0	0	0	1	0	0	0	15330	565	20	3	719	3	STBD1	4	77230789	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09		77230789	113923487	46	5054											
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83839757	83839757	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttctaaacaaagggaattgTatcttcaacagaaaatatta	18	13	5	5	0	3	1	1	0	2	1	3	2	3	2	0	1	2	1	0	1	10	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_024672	exon5	c.T2392C	p.Y798H	GAATTGTATCTTC	.	20	7	17	0	.	.	C	83839757	T	C	83839757	3	2	33	1	0	0	0	0	1	0	0	0	15911	1638	57	4	2410	4	THAP9	4	83839757	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	6608968	83839757	107314519	47	5055											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811120	140811120	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgttgctgttgctgtttctg	0	18	13	10	0	1	0	0	0	1	0	1	0	1	0	0	0	9	12	0	0	0	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	MAML3_ENST00000509479,colon,carcinoma,0,2	MAML3_ENST00000509479	NM_018717	exon2	c.G1470A	p.Q490Q	CTGCTGCTGTTGC	.	14	3	14	0	.	0	T	140811120	C	T	140811120	2	4	33	1	0	0	0	0	0	0	0	1	9257	796	28	3		3	MAML3	4	140811120	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	56971363	140811120	50343156	48	5056											
DCHS2	54798	hgsc.bcm.edu	37	chr4	155312413	155312413	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaacatcttcttttctccgtCttcattctctgatttcgtta	7	20	3	11	2	6	1	1	1	5	0	9	1	6	1	1	0	1	1	1	0	2	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	DCHS2,right_upper_lobe,carcinoma,0,1	DCHS2	NM_017639	exon1	c.G37T	p.D13Y	CTCCGTCTTCATT	.	39	2	46	0	.	0	A	155312413	C	A	155312413	3	1	33	1	0	0	0	0	1	0	0	0	4311	913	32	3	8909	3	DCHS2	4	155312413	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	14501293	155312413	35841863	49	5057											
LPCAT1	79888	hgsc.bcm.edu	37	chr5	1489863	1489863	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggctacgtgcattacctGtggccactttccgttggact	6	12	11	12	2	0	0	0	0	0	0	1	1	1	1	3	3	3	3	3	3	2	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LPCAT1,colon,carcinoma,0,1	LPCAT1	NM_024830	exon4	c.C604A	p.Q202K	TTACCTGTGGCCA	.	39	2	41	0	.	0	T	1489863	G	T	1489863	3	4	33	1	0	0	0	0	1	0	0	0	8955	1386	48	3	1044	3	LPCAT1	5	1489863	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		1489863	179425397	50	5058											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	13753419	13753419	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atcaattaacaaagggtaacGagatgccttcgtgacaataa	17	9	8	7	2	1	2	1	1	0	1	2	3	1	2	1	1	3	1	1	1	6	4	rs202232031	alternate_allele	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	DNAH5,NS,malignant_melanoma,0,1	DNAH5	NM_001369	exon63	c.C10795A	p.R3599S	GGTAACGAGATGC	.	57	4	35	0	.	0	T	13753419	G	T	13753419	3	4	33	1	0	0	0	0	1	0	0	0	4632	1058	37	2	3147	2	DNAH5	5	13753419	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	12263556	13753419	167161841	51	5059											
PDZD2	23037	hgsc.bcm.edu	37	chr5	32071524	32071524	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtccctctcttgcaaaaaaGgtgagtcaaggtgaactgct	12	10	10	9	0	2	2	1	2	1	0	4	2	3	2	1	2	3	2	1	2	5	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_178140	exon15	c.G2568A	p.K856K	AAAAAAGGTGAGT	.	90	4	90	0	.	.	A	32071524	G	A	32071524	2	1	33	1	0	0	0	0	0	0	0	1	11748	1014	35	3		3	PDZD2	5	32071524	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	18318105	32071524	148843736	52	5060											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	95746636	95746636	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acagtcacaattatctccctGacgccccccgtttcccgaag	9	9	6	17	3	2	1	1	1	1	0	4	2	3	1	5	0	0	1	5	0	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000439	exon8	c.C937A	p.Q313K	CTCCCTGACGCCC	.	65	4	53	0	.	.	T	95746636	G	T	95746636	3	4	33	1	0	0	0	0	1	0	0	0	11647	1299	45	3	1352	3	PCSK1	5	95746636	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	63675112	95746636	85168624	53	5061											
RAD50	10111	hgsc.bcm.edu	37	chr5	131927041	131927041	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aaacttgaccaggagatggaGcagttaaaccatcatacaac	17	7	8	9	0	1	2	1	1	0	1	1	4	1	3	2	2	5	2	2	2	5	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RAD50_ENST00000265335,NS,carcinoma,0,2	RAD50_ENST00000265335	NM_005732	exon10	c.G1578T	p.E526D	GATGGAGCAGTTA	.	41	2	29	0	.	0	T	131927041	G	T	131927041	3	4	33	1	0	0	0	0	1	0	0	0	13036	962	34	3	1616	3	RAD50	5	131927041	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	36180405	131927041	48988219	54	5062											
PCDHGA3	56112	hgsc.bcm.edu	37	chr5	140725547	140725547	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggccgtccaggaccaCggccagccccctctctccgc	4	6	12	19	3	1	0	0	0	1	0	4	1	3	1	7	4	1	0	7	4	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PCDHGA3_ENST00000253812,NS,carcinoma,0,1	PCDHGA3_ENST00000253812	NM_032011	exon1	c.C1947T	p.H649H	GGACCACGGCCAG	.	84	9	45	1	.	0	T	140725547	C	T	140725547	2	4	33	1	0	0	0	0	0	0	0	1	11602	535	19	1		1	PCDHGA3	5	140725547	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	8798506	140725547	40189713	55	5063											
PCDHGA10	56106	hgsc.bcm.edu	37	chr5	140795103	140795103	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gacacgctcatcagccaggaGagctgtgagaaaaacgatcc	14	5	11	11	2	2	2	2	1	0	2	3	6	3	2	2	1	3	2	2	1	2	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_032090	exon1	c.G2361T	p.E787D	CCAGGAGAGCTGT	.	97	4	101	0	.	.	T	140795103	G	T	140795103	3	4	33	1	0	0	0	0	1	0	0	0	11598	933	33	3	2363	3	PCDHGA10	5	140795103	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	69556	140795103	40120157	56	5064											
ANXA6	309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150484839	150484839	+	Silent	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	taaagtttgtcggcaaagaaGagaggcttgttcttgacact	12	12	11	6	1	1	3	0	1	1	2	2	4	1	3	0	2	0	4	0	2	4	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001155	exon24	c.C1806G	p.L602L	AAAGAAGAGAGGC	.	30	11	51	0	.	.	C	150484839	G	C	150484839	2	2	33	1	0	0	0	0	0	0	0	1	716	929	33	5		5	ANXA6	5	150484839	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	9689736	150484839	30430421	57	5065											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156590618	156590618	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ggctgcagatacatcacaagGcttgtagagcccagtctcac	11	8	10	12	0	2	2	2	0	1	2	3	2	2	2	1	2	3	4	1	2	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	FAM71B,NS,carcinoma,0,1	FAM71B	NM_130899	exon2	c.C658A	p.P220T	CACAAGGCTTGTA	.	26	7	22	0	.	0	T	156590618	G	T	156590618	3	4	33	1	0	0	0	0	1	0	0	0	5643	1203	42	3	1163	3	FAM71B	5	156590618	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	6105779	156590618	24324642	58	5066											
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176832069	176832069	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcaccctggctggccagcCgctggcagtgggcatcagga	6	6	15	14	1	2	0	2	0	0	0	2	1	2	1	3	5	1	5	3	5	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000505	exon6	c.G515A	p.R172Q	GCCAGCCGCTGGC	.	29	7	26	0	.	.	T	176832069	C	T	176832069	3	4	33	1	0	0	0	0	1	0	0	0	5367	652	23	1	1368	1	F12	5	176832069	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	20241451	176832069	4083191	59	5067											
NHLRC1	378884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	18122100	18122100	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctccgaaggaccccttccgcGaagtcgacgtccaggaggtg	8	6	13	14	5	0	0	0	0	0	0	4	5	3	2	5	3	0	0	5	3	2	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_198586	exon1	c.C738T	p.F246F	TTCCGCGAAGTCG	.	56	13	43	0	.	.	A	18122100	G	A	18122100	2	1	33	1	0	0	0	0	0	0	0	1	10452	1049	37	1		1	NHLRC1	6	18122100	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		18122100	152992967	60	5068											
FAM65B	9750	bcgsc.ca	37	chr6	24836027	24836027	+	Silent	SNP	G	A	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agaggacttcctgccacactGgtcccaactcctgtgtcttc	7	11	8	15	0	1	1	0	0	1	1	5	2	4	2	4	2	2	0	4	2	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	FAM65B	NM_014722	exon16	c.C2175T	p.T725T	CACACTGGTCCCA	.	69	4	48	0	.	134	A	24836027	A	A	24836027	2	1	33	1	0	0	0	0	0	0	0	1	5635	1335	47	3		3	FAM65B	6	24836027	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	6713927	24836027	146279040	61	5069											
GABBR1	2550	hgsc.bcm.edu	37	chr6	29572676	29572676	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaagagtgatataggaggaGaaaactatggcaagagaggc	18	5	14	4	0	0	4	0	1	0	3	0	7	0	5	0	4	1	1	0	4	7	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	GABBR1,NS,carcinoma,0,1	GABBR1	NM_001470	exon21	c.C2529A	p.F843L	GGAGGAGAAAACT	.	48	2	34	0	.	0	T	29572676	G	T	29572676	3	4	33	1	0	0	0	0	1	0	0	0	6190	933	33	3	368	3	GABBR1	6	29572676	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	4736649	29572676	141542391	62	5070											
CUL7	9820	hgsc.bcm.edu	37	chr6	43007936	43007936	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tctgttcaaagtgcccctcaGgtaggagggcaggcaggttc	8	9	14	10	0	3	0	2	0	1	0	4	1	3	1	2	5	1	5	2	5	2	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	CUL7,NS,carcinoma,0,1	CUL7	NM_001168370	exon22	c.C4504A	p.L1502M	CCCTCAGGTAGGA	.	50	2	27	0	.	0	T	43007936	G	T	43007936	3	4	33	1	0	0	0	0	1	0	0	0	4083	991	35	3	864	3	CUL7	6	43007936	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	13435260	43007936	128107131	63	5071											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390463	45390463	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caacagcagcagcagcagcaGcaacagcagcagcagcagca	16	0	11	14	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	0	0	2	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.G192A	p.Q64Q	GCAGCAGCAACAG	.	39	2	29	0	.	0	A	45390463	G	A	45390463	2	1	33	1	0	0	0	0	0	0	0	1	13800	962	34	3		3	RUNX2	6	45390463	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	2382527	45390463	125724604	64	5072											
DST	667	hgsc.bcm.edu	37	chr6	56342186	56342186	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttgttatccagtgcttaatgGtagtgatggagtcggggtgg	7	14	16	4	1	0	1	0	1	0	0	2	2	1	2	1	5	1	3	1	5	3	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	DST_ENST00000370769,NS,carcinoma,0,2	DST_ENST00000370769	NM_015548	exon72	c.C13763A	p.T4588N	TTAATGGTAGTGA	.	75	3	53	0	.	0	T	56342186	G	T	56342186	3	4	33	1	0	0	0	0	1	0	0	0	4809	1261	44	3	1804	3	DST	6	56342186	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	10951723	56342186	114772881	65	5073											
ME1	4199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	83937111	83937111	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	gctttgctagttggattactCaaagcaaaaataataggccg	14	11	9	7	1	1	0	1	0	0	0	1	1	1	1	1	2	3	4	1	2	7	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_002395	exon11	c.G1218C	p.L406F	ATTACTCAAAGCA	.	75	33	79	0	.	.	G	83937111	C	G	83937111	3	3	33	1	0	0	0	0	1	0	0	0	9467	825	29	5	516	5	ME1	6	83937111	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	27594925	83937111	87177956	66	5074											
LAMA4	3910	hgsc.bcm.edu	37	chr6	112463373	112463373	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagtctcggtcagttccGgccgcttcacagggggtttc	4	11	13	13	3	3	0	2	0	1	0	6	0	4	0	2	4	1	4	2	4	0	3	rs375497091	alternate_allele	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LAMA4,NS,carcinoma,0,1	LAMA4	NM_001105206	exon20	c.C2615A	p.P872Q	AGTTCCGGCCGCT	.	57	2	58	0	.	0	T	112463373	G	T	112463373	3	4	33	1	0	0	0	0	1	0	0	0	8647	1116	39	2	2936	2	LAMA4	6	112463373	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	28526262	112463373	58651694	67	5075											
DNAH11	8701	hgsc.bcm.edu;bcgsc.ca	37	chr7	21678582	21678582	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgtgaaaaagctctcGctgaatacctggaaaccaag	13	10	8	10	1	2	2	0	2	2	0	3	3	2	3	2	1	3	2	2	1	6	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	.	p.A1620S	.	.	GCTCTCGCTGAAT	.	50	4	54	0	.	.	T	21678582	G	T	21678582	3	4	33	1	0	0	0	0	1	0	0	0	4627	1087	38	2	4968	2	DNAH11	7	21678582	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		21678582	137460081	68	5076											
MYL7	58498	hgsc.bcm.edu	37	chr7	44179935	44179935	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ggctcaccattgagcttctcCccaaagagcgtgaggaagac	11	7	11	12	1	2	4	1	2	1	2	3	5	2	5	3	2	2	2	3	2	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	MYL7,trunk,malignant_melanoma,0,1	MYL7	NM_021223	exon4	c.G285A	p.G95G	CTTCTCCCCAAAG	.	36	2	37	0	.	0	T	44179935	C	T	44179935	2	4	33	1	0	0	0	0	0	0	0	1	10101	610	22	3		3	MYL7	7	44179935	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	22501353	44179935	114958728	69	5077											
AKAP9	10142	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	91729135	91729135	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggaacatggttatgaagctGgaagagcagatcaggtggta	14	8	15	4	0	1	3	1	1	0	2	1	5	1	5	0	5	3	4	0	5	5	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_005751	exon44	c.G10848A	p.L3616L	GAAGCTGGAAGAG	.	40	4	29	0	.	.	A	91729135	G	A	91729135	2	1	33	1	0	0	0	0	0	0	0	1	456	1335	47	3		3	AKAP9	7	91729135	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	47549200	91729135	67409528	70	5078											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	104719314	104719314	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ccatacccttttgtgttattCtactctaaatttcatgggct	8	18	5	10	0	3	0	1	0	2	0	3	0	3	0	2	1	2	2	2	1	5	8	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_018682	exon11	c.C1152T	p.F384F	GTTATTCTACTCT	.	71	33	69	0	.	.	T	104719314	C	T	104719314	2	4	33	1	0	0	0	0	0	0	0	1	9672	912	32	3		3	MLL5	7	104719314	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	12990179	104719314	54419349	71	5079											
PRSS1	5644	ucsc.edu	37	chr7	142459667	142459667	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagcacaacatcgaagtcctGgaggggaatgagcagttcat	13	7	13	8	1	1	1	1	1	0	0	3	5	2	3	1	3	3	3	1	3	3	1	rs142476093	bycluster	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	PRSS1	NM_002769	exon3	c.G243A	p.L81L	AGTCCTGGAGGGG	.	98	12	49	1	C|0.000;G|1.000	68	A	142459667	G	A	142459667	2	1	33	1	0	0	0	0	0	0	0	1	12664	1335	47	3		3	PRSS1	7	142459667	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	37740353	142459667	16678996	72	5080											
WDR60	55112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	158704268	158704268	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agtacaaaactgcttcggctCattgacttagatttttcatt	11	16	6	8	1	2	2	2	1	0	1	3	2	2	2	0	1	3	3	0	1	4	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_018051	exon12	c.C1488T	p.L496L	TCGGCTCATTGAC	.	76	30	51	0	.	.	T	158704268	C	T	158704268	2	4	33	1	0	0	0	0	0	0	0	1	17371	813	29	3		3	WDR60	7	158704268	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	16244601	158704268	434395	73	5081											
LGI3	203190	hgsc.bcm.edu	37	chr8	22005731	22005731	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	gcgtctgtcccttgaagctgGgggccaggagtagctgggcg	5	8	18	10	2	1	1	0	1	1	0	2	2	2	2	2	4	2	3	2	4	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LGI3,NS,carcinoma,0,1	LGI3	NM_139278	exon8	c.C1589A	p.P530H	AAGCTGGGGGCCA	.	29	2	29	0	.	0	T	22005731	G	T	22005731	3	4	33	1	0	0	0	0	1	0	0	0	8793	1232	43	3	61	3	LGI3	8	22005731	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		22005731	124358291	74	5082											
EBF2	64641	hgsc.bcm.edu	37	chr8	25716016	25716016	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcttgtgttgcggatGtacccttggcaacaaagaaa	11	11	11	8	1	0	1	0	0	0	1	0	2	0	2	1	2	5	5	1	2	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	EBF2,larynx,carcinoma,0,1	EBF2	NM_022659	exon14	c.C1347A	p.Y449X	GCGGATGTACCCT	.	57	3	30	0	.	0	T	25716016	G	T	25716016	4	4	33	1	0	0	0	0	0	1	0	0	4907	1372	48	3	392	3	EBF2	8	25716016	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	3710285	25716016	120648006	75	5083											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	53554933	53554933	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	tacagacatcatgcttgtctCcattgctgaatccactcttc	9	14	5	13	0	3	2	1	1	2	1	6	2	4	2	2	0	3	2	2	0	2	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001083617	exon18	c.G4315C	p.E1439Q	TTGTCTCCATTGC	.	31	16	32	0	.	.	G	53554933	C	G	53554933	3	3	33	1	0	0	0	0	1	0	0	0	13151	864	30	5	497	5	RB1CC1	8	53554933	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	27838917	53554933	92809089	76	5084											
VCPIP1	80124	hgsc.bcm.edu	37	chr8	67577658	67577658	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatgagcaaaccaaattgttCaagggaaagctgtaattttt	15	13	8	5	0	1	1	1	1	0	0	1	2	1	2	1	1	3	4	1	1	6	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	VCPIP1,NS,carcinoma,0,1	VCPIP1	NM_025054	exon1	c.G1536T	p.L512F	ATTGTTCAAGGGA	.	49	2	49	0	.	0	A	67577658	C	A	67577658	3	1	33	1	0	0	0	0	1	0	0	0	17201	825	29	3	2144	3	VCPIP1	8	67577658	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	14022725	67577658	78786364	77	5085											
ODF1	4956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103564207	103564207	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tataagctttactgtctgcgAccatctctcagaagtttgga	10	14	8	9	1	3	1	1	0	2	1	4	3	3	2	1	1	3	2	1	1	4	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_024410	exon1	c.A252G	p.R84R	TCTGCGACCATCT	.	39	15	33	0	.	.	G	103564207	A	G	103564207	2	3	33	1	0	0	0	0	0	0	0	1	10874	262	10	4		4	ODF1	8	103564207	Silent	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	35986549	103564207	42799815	78	5086											
PKHD1L1	93035	hgsc.bcm.edu	37	chr8	110491815	110491815	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttggcaatcatcacGagaaaataattatactgtac	14	15	5	7	1	3	1	2	0	1	1	3	2	3	1	0	1	2	2	0	1	7	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PKHD1L1,NS,carcinoma,+1,1	PKHD1L1	NM_177531	exon54	c.G9125T	p.R3042L	CATCACGAGAAAA	.	61	3	30	0	.	+1	T	110491815	G	T	110491815	3	4	33	1	0	0	0	0	1	0	0	0	12020	1058	37	2	9339	2	PKHD1L1	8	110491815	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	6927608	110491815	35872207	79	5087											
FER1L6	654463	hgsc.bcm.edu	37	chr8	124989720	124989720	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atgaacaggtgatcttcaagGaaatgttccctcccttgtgt	10	13	9	9	0	2	2	1	2	1	0	4	3	4	3	2	2	1	1	2	2	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	FER1L6,NS,lymphoid_neoplasm,0,1	FER1L6	NM_001039112	exon10	c.G934T	p.E312X	TTCAAGGAAATGT	.	35	2	51	0	.	0	T	124989720	G	T	124989720	4	4	33	1	0	0	0	0	0	1	0	0	5848	1175	41	3	968	3	FER1L6	8	124989720	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	14497905	124989720	21374302	80	5088											
GSDMC	56169	hgsc.bcm.edu	37	chr8	130777904	130777904	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	gtaatccaaagagcaattttCcctaaaatattcacactact	16	12	3	10	0	1	1	1	0	0	1	3	1	3	1	2	0	2	2	2	0	7	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	GSDMC,NS,malignant_melanoma,0,2	GSDMC	NM_031415	exon4	c.G540A	p.G180G	AATTTTCCCTAAA	.	47	2	46	0	.	0	T	130777904	C	T	130777904	2	4	33	1	0	0	0	0	0	0	0	1	6859	842	30	3		3	GSDMC	8	130777904	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	5788184	130777904	15586118	81	5089											
TEK	7010	hgsc.bcm.edu	37	chr9	27158032	27158032	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccagagaatgggctaaaaaaGttgtttggaagagagaaaag	18	7	13	3	0	0	3	0	0	0	3	0	6	0	4	1	2	0	3	1	2	7	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000459	exon2	c.G256T	p.V86F	AAAAAAGTTGTTT	.	99	4	63	0	.	.	T	27158032	G	T	27158032	3	4	33	1	0	0	0	0	1	0	0	0	15810	1029	36	3	262	3	TEK	9	27158032	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		27158032	114055399	82	5090											
FBP1	2203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	97367846	97367846	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	0	cacataccgggccccataagGagctgaattatcctgcaagt	12	8	9	12	1	0	1	0	1	0	0	1	2	1	2	4	2	3	2	4	2	5	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000507	exon6	c.C718G	p.P240A	CATAAGGAGCTGA	.	62	26	54	0	.	.	C	97367846	G	C	97367846	3	2	33	1	0	0	0	0	1	0	0	0	5738	1174	41	5	306	5	FBP1	9	97367846	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	70209814	97367846	43845585	83	5091											
PFKP	5214	hgsc.bcm.edu	37	chr10	3149416	3149416	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtctccacagaaccgtgcccGgaaaaaaaggctgaatatta	15	7	9	10	2	1	2	0	1	1	1	2	3	1	3	3	2	2	1	3	2	7	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PFKP_ENST00000381075,colon,carcinoma,0,2	PFKP_ENST00000381075	NM_002627	exon8	c.G785A	p.R262Q	GTGCCCGGAAAAA	.	64	3	52	0	.	0	A	3149416	G	A	3149416	3	1	33	1	0	0	0	0	1	0	0	0	11814	1116	39	1	815	1	PFKP	10	3149416	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		3149416	132385331	84	5092											
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70206164	70206164	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	ttggcttagtagagtgtacaGaacaacctgtgcaaacattg	13	11	10	7	0	0	2	0	0	0	2	0	2	0	2	1	1	5	4	1	1	6	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001080449	exon7	c.C946T	p.L316L	TGTACAGAACAAC	.	95	44	61	0	.	.	A	70206164	G	A	70206164	2	1	33	1	0	0	0	0	0	0	0	1	4624	933	33	3		3	DNA2	10	70206164	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	67056748	70206164	65328583	85	5093											
LIPA	3988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	90974598	90974598	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ccagctttcactgatatttcCtcattagattaataatttta	12	18	3	8	0	2	2	2	1	0	1	3	2	3	2	2	0	1	1	2	0	5	8	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000235	exon10	c.G1187A	p.R396K	TATTTCCTCATTA	.	69	4	68	0	.	.	T	90974598	C	T	90974598	3	4	33	1	0	0	0	0	1	0	0	0	8860	681	24	3	16	3	LIPA	10	90974598	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	20768434	90974598	44560149	86	5094											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu	37	chr10	91177164	91177164	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taaaaggccaaaataaagacGcccttgagtgcttggaacaa	17	7	9	8	1	0	2	0	1	0	1	0	3	0	3	2	2	2	1	2	2	8	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	IFIT5,colon,carcinoma,0,1	IFIT5	NM_012420	exon2	c.G208A	p.A70T	AAAGACGCCCTTG	.	40	5	26	0	.	0	A	91177164	G	A	91177164	3	1	33	1	0	0	0	0	1	0	0	0	7569	1087	38	1	214	1	IFIT5	10	91177164	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	202566	91177164	44357583	87	5095											
KIF20B	9585	bcgsc.ca	37	chr10	91470854	91470854	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggttatcatcagaacaagaGaaagaagaaattgctagcaa	20	7	9	5	0	2	4	2	0	0	4	2	5	2	4	0	1	3	3	0	1	8	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	KIF20B	NM_016195	exon6	c.G627T	p.E209D	ACAAGAGAAAGAA	.	160	5	142	0	.	191	T	91470854	T	T	91470854	3	4	33	1	0	0	0	0	1	0	0	0	8329	933	33	3	645	3	KIF20B	10	91470854	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	293690	91470854	44063893	88	5096											
PDE6C	5146	hgsc.bcm.edu	37	chr10	95400207	95400207	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	atggtgtcatcttcttttagGttcttaccagatggatgtac	8	17	9	7	0	4	1	1	0	3	1	4	2	4	2	1	3	2	2	1	3	3	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PDE6C,NS,carcinoma,0,1	PDE6C	NM_006204	exon13	c.G1630T	p.V544F	TTTTAGGTTCTTA	.	72	3	52	0	.	0	T	95400207	G	T	95400207	3	4	33	1	0	0	0	0	1	0	0	0	11694	1275	44	3	1680	3	PDE6C	10	95400207	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	3929353	95400207	40134540	89	5097											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104121537	104121537	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cccaagatgccttatgagatGaaggagatggcactggaggc	12	7	14	8	0	0	4	0	2	0	3	0	7	0	5	2	4	1	1	2	4	3	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001199378	exon14	c.G1554A	p.M518I	TGAGATGAAGGAG	.	41	13	26	0	.	.	A	104121537	G	A	104121537	3	1	33	1	0	0	0	0	1	0	0	0	6311	1290	45	3	1601	3	GBF1	10	104121537	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	8721330	104121537	31413210	90	5098											
ADRA2A	150	hgsc.bcm.edu	37	chr10	112838890	112838890	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	caaggcgtcgcgctggcgcgGgcggcagaaccgcgagaagc	8	2	18	13	8	0	2	0	0	0	2	1	3	0	2	1	4	2	2	1	4	3	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	ADRA2A,NS,carcinoma,+1,1	ADRA2A	NM_000681	exon1	c.G1136T	p.G379V	GGCGCGGGCGGCA	.	9	2	9	0	.	+1	T	112838890	G	T	112838890	3	4	33	1	0	0	0	0	1	0	0	0	336	1232	43	3	1138	3	ADRA2A	10	112838890	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	8717353	112838890	22695857	91	5099											
ZNF511	118472	ucsc.edu;bcgsc.ca	37	chr10	135123330	135123330	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	ctgctgccaggtgttcgatgCcctggacgactacgagcacc	7	8	12	14	3	0	0	0	0	0	0	1	4	0	1	3	2	5	3	3	2	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	ZNF511	NM_145806	exon3	c.C278T	p.A93V	TCGATGCCCTGGA	.	31	4	23	0	.	17	T	135123330	C	T	135123330	3	4	33	1	0	0	0	0	1	0	0	0	18012	739	26	3	288	3	ZNF511	10	135123330	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	22284440	135123330	411417	92	5100											
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	13031684	13031684	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tttcgcaaactggccaagctCaaccggcggcgccagcagca	10	5	11	15	4	1	0	1	0	0	0	2	0	1	0	3	3	5	4	3	3	3	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001080521	exon1	c.C561T	p.L187L	CAAGCTCAACCGG	.	65	28	66	0	.	.	T	13031684	C	T	13031684	2	4	33	1	0	0	0	0	0	0	0	1	13137	813	29	3		3	RASSF10	11	13031684	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09		13031684	121974832	93	5101											
SPTY2D1	144108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18636621	18636621	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	cctgagctggagctgccattCtggcgcctaggcacagggcc	6	7	14	14	1	1	1	0	1	1	0	1	2	1	2	4	4	3	3	4	4	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_194285	exon3	c.G1200C	p.Q400H	GCCATTCTGGCGC	.	30	12	27	0	.	.	G	18636621	C	G	18636621	3	3	33	1	0	0	0	0	1	0	0	0	15182	912	32	5	873	5	SPTY2D1	11	18636621	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	5604937	18636621	116369895	94	5102											
ABTB2	25841	hgsc.bcm.edu	37	chr11	34194737	34194737	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcacagtccagaccaggcagCagcagccgggctgcctgccg	8	4	13	16	2	1	1	1	0	0	1	2	1	2	1	5	2	5	4	5	2	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_145804	exon4	c.G1362A	p.L454L	AGGCAGCAGCAGC	.	77	4	89	0	.	.	T	34194737	C	T	34194737	2	4	33	1	0	0	0	0	0	0	0	1	103	697	25	3		3	ABTB2	11	34194737	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	15558116	34194737	100811779	95	5103											
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46321678	46321678	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gcgactcagcgccccagagcCcccttgtgcccatcaagatg	8	6	10	17	2	2	2	2	0	0	2	2	3	2	2	5	0	3	0	5	0	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_052854	exon2	c.C295A	p.P99T	CAGAGCCCCCTTG	.	28	11	34	0	.	.	A	46321678	C	A	46321678	3	1	33	1	0	0	0	0	1	0	0	0	3879	623	22	3	301	3	CREB3L1	11	46321678	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	12126941	46321678	88684838	96	5104											
OR8K3	219473	hgsc.bcm.edu	37	chr11	56086520	56086520	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgtggagcccacctgacagtGgtcatagtgttctatgggac	8	11	13	9	0	2	1	1	1	1	0	2	3	2	3	2	3	1	1	2	3	2	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	OR8K3,caecum,carcinoma,0,1	OR8K3	NM_001005202	exon1	c.G738A	p.V246V	GACAGTGGTCATA	.	43	2	33	0	.	0	A	56086520	G	A	56086520	2	1	33	1	0	0	0	0	0	0	0	1	11291	1335	47	3		3	OR8K3	11	56086520	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	9764842	56086520	78919996	97	5105											
C1RL	51279	hgsc.bcm.edu	37	chr12	7261802	7261802	+	RNA	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actggacatctgggacctgcGagagaactggcccaggatag	11	6	14	10	1	1	1	0	0	1	1	1	6	1	4	2	4	2	0	2	4	2	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	.	.	.	.	ACCTGCGAGAGAA	.	25	5	21	0	.	.	T	7261802	G	T	7261802	1	4	33	0	1	0	0	0	0	0	0	0	1986	1073	37	2		2	C1RL	12	7261802	RNA	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		7261802	126590093	98	5106											
GUCY2C	2984	hgsc.bcm.edu	37	chr12	14849213	14849213	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttccagcccctcattcaccGcatcttccaagtttttcagg	7	14	5	15	1	4	0	3	0	1	0	6	0	6	0	5	1	1	2	5	1	1	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	GUCY2C,NS,carcinoma,0,1	GUCY2C	NM_004963	exon1	c.C170T	p.A57V	TTCACCGCATCTT	.	32	2	34	0	.	0	A	14849213	G	A	14849213	3	1	33	1	0	0	0	0	1	0	0	0	6937	1087	38	1	3159	1	GUCY2C	12	14849213	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	7587411	14849213	119002682	99	5107											
ITPR2	3709	hgsc.bcm.edu	37	chr12	26709212	26709212	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	tcttgcatcgcttccctcagGgaacagcagttctggactgt	7	12	10	12	1	3	0	1	0	2	0	5	2	4	2	1	2	3	4	1	2	1	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	ITPR2,NS,carcinoma,0,1	ITPR2	NM_002223	exon36	c.C4918T	p.P1640S	CCTCAGGGAACAG	.	42	2	32	0	.	0	A	26709212	G	A	26709212	3	1	33	1	0	0	0	0	1	0	0	0	7965	1232	43	3	3275	3	ITPR2	12	26709212	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	11859999	26709212	107142683	100	5108											
GXYLT1	283464	hgsc.bcm.edu	37	chr12	42523639	42523639	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggattccagtaacacagaGagaaatctttacacctaaca	17	8	7	9	0	1	2	0	0	1	2	2	4	2	3	2	1	3	1	2	1	4	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	GXYLT1,NS,carcinoma,0,1	GXYLT1	NM_173601	exon2	c.C236A	p.S79Y	CACAGAGAGAAAT	.	32	2	31	0	.	0	T	42523639	G	T	42523639	3	4	33	1	0	0	0	0	1	0	0	0	6944	942	33	3	1114	3	GXYLT1	12	42523639	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	15814427	42523639	91328256	101	5109											
PDE1B	5153	hgsc.bcm.edu;bcgsc.ca	37	chr12	54970441	54970441	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tcgttccacctgggtcaagcGcattcaggagaataagcaga	12	8	11	10	2	2	2	2	0	0	2	4	3	3	2	2	2	2	3	2	2	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000924	exon14	c.G1463A	p.R488H	TCAAGCGCATTCA	.	38	4	26	0	.	.	A	54970441	G	A	54970441	3	1	33	1	0	0	0	0	1	0	0	0	11681	1087	38	1	1570	1	PDE1B	12	54970441	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	12446802	54970441	78881454	102	5110											
STAT2	6773	hgsc.bcm.edu	37	chr12	56743970	56743970	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	agtcagaatgttgaacttccGgaagctgttccaggaggaag	12	9	13	7	1	1	2	1	1	0	1	3	5	3	5	2	3	2	3	2	3	4	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	STAT2,NS,carcinoma,0,1	STAT2	NM_005419	exon13	c.C1120A	p.R374R	ACTTCCGGAAGCT	.	56	3	29	0	.	0	T	56743970	G	T	56743970	2	4	33	1	0	0	0	0	0	0	0	1	15321	1115	39	2		2	STAT2	12	56743970	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	1773529	56743970	77107925	103	5111											
RBMS2	5939	bcgsc.ca	37	chr12	56982715	56982715	+	Splice_Site	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccctccttggctatggcacaGgagagcagcggccaacagaa	11	5	12	13	1	0	2	0	0	0	2	1	3	1	2	3	4	3	3	3	4	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	RBMS2	NM_002898	exon13	c.1144-1G>T	.	GGCACAGGAGAGC	.	48	4	46	0	.	29	T	56982715	T	T	56982715	5	4	33	1	0	0	0	0	0	0	1	0	13201	1014	35	3	1193	3	RBMS2	12	56982715	Splice_Site	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	238745	56982715	76869180	104	5112											
KIF5A	3798	hgsc.bcm.edu;bcgsc.ca	37	chr12	57960966	57960966	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttctggatgtgattgatgaaGggaaatcaaatcgtcatgtg	12	13	12	4	1	3	3	2	3	1	0	4	5	3	5	0	2	0	0	0	2	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_004984	exon7	c.G559T	p.G187W	GATGAAGGGAAAT	.	71	4	40	0	.	.	T	57960966	G	T	57960966	3	4	33	1	0	0	0	0	1	0	0	0	8347	1000	35	3	585	3	KIF5A	12	57960966	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	978251	57960966	75890929	105	5113											
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	75436135	75436135	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gcttgcgtgtaaccagtaatGacaacctctttgcagttatc	10	13	8	10	1	1	1	0	1	1	0	2	1	1	1	2	0	4	5	2	0	4	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_139136	exon5	c.C1800T	p.V600V	AGTAATGACAACC	.	55	21	33	0	.	.	A	75436135	G	A	75436135	2	1	33	1	0	0	0	0	0	0	0	1	8059	1277	45	3		3	KCNC2	12	75436135	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	17475169	75436135	58415760	106	5114											
LRRIQ1	84125	hgsc.bcm.edu;bcgsc.ca	37	chr12	85547524	85547524	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	atctgaaaaagaaaaaaaaaTttcagaagaatggtatgtag	22	9	8	2	0	2	4	1	1	1	3	2	4	2	4	0	1	0	2	0	1	10	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LRRIQ1_ENST00000393217,caecum,carcinoma,0,1	LRRIQ1_ENST00000393217	NM_001079910	exon22	c.T4625A	p.I1542N	AAAAAATTTCAGA	.	74	5	58	0	.	0	A	85547524	T	A	85547524	3	1	33	1	0	0	0	0	1	0	0	0	9074	1493	52	5	4711	5	LRRIQ1	12	85547524	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	10111389	85547524	48304371	107	5115											
IKBIP	121457	hgsc.bcm.edu;bcgsc.ca	37	chr12	99020313	99020313	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaatgtatatgttttgCttctgatttgaaaatgtctg	10	19	9	3	0	2	3	0	3	2	1	2	4	2	3	0	0	1	3	0	0	5	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_153687	exon3	c.G529A	p.A177T	GTTTTGCTTCTGA	.	39	4	38	0	.	.	T	99020313	C	T	99020313	3	4	33	1	0	0	0	0	1	0	0	0	7653	797	28	3	1368	3	IKBIP	12	99020313	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	13472789	99020313	34831582	108	5116											
NOS1	4842	hgsc.bcm.edu	37	chr12	117691478	117691478	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggtccagcactctcaaagttGtctctgaggtcgggcccatc	7	10	11	13	1	2	1	1	1	2	0	7	1	3	1	2	3	1	2	2	3	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	NOS1,NS,carcinoma,0,1	NOS1	NM_001204218	exon18	c.C2715A	p.D905E	AAAGTTGTCTCTG	.	27	2	28	0	.	0	T	117691478	G	T	117691478	3	4	33	1	0	0	0	0	1	0	0	0	10588	1368	48	3	1743	3	NOS1	12	117691478	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	18671165	117691478	16160417	109	5117											
DHX37	57647	broad.mit.edu	37	chr12	125437072	125437072	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctctcggtgggcggctgcaTcttgggatccacgaagagct	6	9	15	11	3	2	1	0	0	2	1	4	3	3	2	1	4	2	4	1	4	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	DHX37	NM_032656	exon21	c.A2740G	p.M914V	GCTGCATCTTGGG	.	25	3	26	0	.	114	C	125437072	T	C	125437072	3	2	33	1	0	0	0	0	1	0	0	0	4538	1435	50	4	761	4	DHX37	12	125437072	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	7745594	125437072	8414823	110	5118											
ANKLE2	23141	hgsc.bcm.edu	37	chr12	133331415	133331415	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tcctcctctggaggattcagGcccacactgtaaccaaaatc	11	9	7	14	0	2	0	1	0	1	0	5	2	4	2	4	3	1	1	4	3	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	ANKLE2,NS,carcinoma,0,1	ANKLE2	NM_015114	exon2	c.C486A	p.G162G	ATTCAGGCCCACA	.	65	3	48	0	.	0	T	133331415	G	T	133331415	2	4	33	1	0	0	0	0	0	0	0	1	629	1190	42	3		3	ANKLE2	12	133331415	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	7894343	133331415	520480	111	5119											
TPTE2	93492	hgsc.bcm.edu	37	chr13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaacttggaaagtcgtTctaacatactttagccacca	13	12	5	11	1	2	0	1	0	1	0	3	1	2	1	2	1	4	1	2	1	5	7	rs200244531		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	TPTE2_ENST00000400230,NS,carcinoma,0,1	TPTE2_ENST00000400230	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	78	4	57	0	.	0	G	20056679	T	G	20056679	3	3	33	1	0	0	0	0	1	0	0	0	16492	1783	62	4	1508	4	TPTE2	13	20056679	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09		20056679	95113199	112	5120											
ATP12A	479	hgsc.bcm.edu	37	chr13	25274914	25274914	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atctctacctgccagcagacGagtttccagaaacctactca	12	9	6	14	1	2	2	1	0	1	2	4	3	3	2	4	0	5	2	4	0	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	ATP12A,NS,carcinoma,0,1	ATP12A	NM_001185085	exon13	c.G1753T	p.E585X	GCAGACGAGTTTC	.	39	2	46	0	.	0	T	25274914	G	T	25274914	4	4	33	1	0	0	0	0	0	1	0	0	1121	1059	37	2	1803	2	ATP12A	13	25274914	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	5218235	25274914	89894964	113	5121											
PCDH20	64881	hgsc.bcm.edu	37	chr13	61985616	61985616	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctatgagtcggttctattgaGatttgtggttctttctcctc	5	19	9	8	1	3	2	0	2	3	1	6	3	3	2	1	2	0	2	1	2	2	7	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_022843	exon2	c.C2616A	p.I872I	TATTGAGATTTGT	.	51	4	33	0	.	.	T	61985616	G	T	61985616	2	4	33	1	0	0	0	0	0	0	0	1	11562	932	33	3		3	PCDH20	13	61985616	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	36710702	61985616	53184262	114	5122											
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	95131418	95131418	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttcactaggctgtccaccGtcatgcagactcgggggaac	8	9	12	12	2	2	1	2	0	0	1	4	2	3	2	2	3	2	3	2	3	2	2	rs375600704		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	DCT_ENST00000446125,caecum,carcinoma,0,6	DCT_ENST00000446125	NM_001129889	exon1	c.C92T	p.T31M	TCCACCGTCATGC	.	38	24	30	0	.	0	A	95131418	G	A	95131418	3	1	33	1	0	0	0	0	1	0	0	0	4327	1145	40	1	1606	1	DCT	13	95131418	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	33145802	95131418	20038460	115	5123											
FAM155A	728215	bcgsc.ca	37	chr13	108518801	108518801	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgatcagagagcaggactgtGaaaaacaagagagatgccag	17	5	13	6	0	1	5	1	2	0	3	1	8	1	6	1	1	3	1	1	1	3	0	rs143077563	alternate_allele	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	FAM155A,arm,malignant_melanoma,0,1	FAM155A	NM_001080396	exon1	c.C144A	p.F48L	GACTGTGAAAAAC	.	51	4	43	0	.	82	T	108518801	T	T	108518801	3	4	33	1	0	0	0	0	1	0	0	0	5495	1281	45	3	1244	3	FAM155A	13	108518801	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	13387383	108518801	6651077	116	5124											
TNFSF13B	10673	hgsc.bcm.edu	37	chr13	108955854	108955854	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	acatctaattcagaggaagaAggtccatgtctttggggatg	12	11	12	6	0	3	2	1	0	2	2	4	4	4	4	1	4	0	0	1	4	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_006573	exon5	c.A647G	p.K216R	GGAAGAAGGTCCA	.	92	4	82	0	.	.	G	108955854	A	G	108955854	3	3	33	1	0	0	0	0	1	0	0	0	16366	72	3	4	665	4	TNFSF13B	13	108955854	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	437053	108955854	6214024	117	5125											
NID2	22795	bcgsc.ca	37	chr14	52535520	52535520	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tcgggcttcgtagaagtgcaGgggattcgccagcttcacca	8	9	13	11	3	1	1	1	0	0	1	4	2	1	2	2	3	2	4	2	3	2	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	NID2	NM_007361	exon1	c.C193A	p.L65M	AGTGCAGGGGATT	.	61	4	49	0	.	201	T	52535520	T	T	52535520	3	4	33	1	0	0	0	0	1	0	0	0	10462	991	35	3	4022	3	NID2	14	52535520	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		52535520	54814020	118	5126											
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52978009	52978009	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	aggtgaatgttcagtgtagtCaatggctgttccattagtgt	9	15	12	5	0	2	1	2	1	0	0	3	1	3	1	1	2	0	4	1	2	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_020784	exon9	c.G705A	p.L235L	TGTAGTCAATGGC	.	59	25	55	0	.	.	T	52978009	C	T	52978009	2	4	33	1	0	0	0	0	0	0	0	1	16857	825	29	3		3	TXNDC16	14	52978009	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	442489	52978009	54371531	119	5127											
DMXL2	23312	hgsc.bcm.edu	37	chr15	51778485	51778485	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	caaattcagattcatataaaCgggcaataaccatggctagc	16	9	7	9	1	2	1	2	0	0	1	2	1	2	1	1	2	3	2	1	2	7	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001174116	exon23	c.G5267A	p.R1756H	TATAAACGGGCAA	.	81	2	99	0	.	.	T	51778485	C	T	51778485	3	4	33	1	0	0	0	0	1	0	0	0	4623	536	19	1	3930	1	DMXL2	15	51778485	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09		51778485	50752907	120	5128											
HEXA	3073	hgsc.bcm.edu	37	chr15	72648952	72648952	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cattcttctccagtgtatgcCgtttccctaggaagacaggg	8	12	10	11	1	2	1	0	0	2	1	4	2	3	2	3	2	1	2	3	2	3	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	HEXA,NS,carcinoma,0,1	HEXA	NM_000520	exon2	c.G260T	p.R87L	GTATGCCGTTTCC	.	27	2	18	0	.	0	A	72648952	C	A	72648952	3	1	33	1	0	0	0	0	1	0	0	0	7114	652	23	2	1381	2	HEXA	15	72648952	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	20870467	72648952	29882440	121	5129											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	88690583	88690583	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tacaattcccgaagactcagCgtctggaagagctgccacga	12	7	10	12	3	2	2	1	0	1	2	3	5	3	3	2	1	4	1	2	1	4	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	NTRK3_ENST00000360948,caecum,carcinoma,-1,3	NTRK3_ENST00000360948	NM_001243101	exon6	c.G447T	p.T149T	ACTCAGCGTCTGG	.	32	12	23	0	.	-1	A	88690583	C	A	88690583	2	1	33	1	0	0	0	0	0	0	0	1	10756	755	27	2		2	NTRK3	15	88690583	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	16041631	88690583	13840809	122	5130											
PRC1	9055	bcgsc.ca	37	chr15	91517385	91517385	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ccttacgtgctttgcccggtGtattgggagccagtcctcgc	4	12	12	13	3	0	0	0	0	0	0	2	1	1	1	4	2	4	2	4	2	2	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	PRC1	NM_199413	exon11	c.C1442A	p.T481K	CCCGGTGTATTGG	.	59	4	45	0	.	51	T	91517385	T	T	91517385	3	4	33	1	0	0	0	0	1	0	0	0	12498	1377	48	3	440	3	PRC1	15	91517385	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	2826802	91517385	11014007	123	5131											
IGF1R	3480	hgsc.bcm.edu	37	chr15	99460004	99460004	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggggagaaagggccttgctgCgcctgccccaaaactgaagc	10	5	14	12	1	0	2	0	1	0	1	0	3	0	2	4	3	5	1	4	3	4	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_000875	exon10	c.C2100T	p.C700C	TTGCTGCGCCTGC	.	59	3	66	0	.	.	T	99460004	C	T	99460004	2	4	33	1	0	0	0	0	0	0	0	1	7615	776	27	1		1	IGF1R	15	99460004	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	7942619	99460004	3071388	124	5132											
RGS11	8786	hgsc.bcm.edu	37	chr16	320814	320814	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agctcctcacatgcctcccaGaagctgaggttttctcctgg	7	11	9	14	0	2	2	1	1	1	1	5	2	4	2	4	2	3	3	4	2	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_183337	exon14	c.C996T	p.F332F	CTCCCAGAAGCTG	.	16	8	7	0	.	.	A	320814	G	A	320814	2	1	33	1	0	0	0	0	0	0	0	1	13344	933	33	3		3	RGS11	16	320814	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		320814	90033939	125	5133											
WDR90	197335	hgsc.bcm.edu	37	chr16	703802	703802	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaggaccaccacgggaggaCggtaacagggccctggctgc	10	3	15	13	2	0	0	0	0	0	0	0	3	0	3	3	6	2	2	3	6	2	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	WDR90,bladder,carcinoma,0,1	WDR90	NM_145294	exon13	c.C1436T	p.T479M	GGAGGACGGTAAC	.	38	2	29	0	.	0	T	703802	C	T	703802	3	4	33	1	0	0	0	0	1	0	0	0	17397	550	19	1	1486	1	WDR90	16	703802	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	382988	703802	89650951	126	5134											
PPL	5493	broad.mit.edu	37	chr16	4953901	4953901	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acctactcctcggcgatcatGtccccctgtgggtgcttcat	5	12	9	15	2	2	0	2	0	0	0	5	1	4	0	4	2	2	1	4	2	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PPL,head_neck,malignant_melanoma,-2,1	PPL	NM_002705	exon3	c.C303A	p.D101E	GATCATGTCCCCC	.	59	3	62	0	.	168	T	4953901	G	T	4953901	3	4	33	1	0	0	0	0	1	0	0	0	12383	1368	48	3	5047	3	PPL	16	4953901	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	4250099	4953901	85400852	127	5135											
XYLT1	64131	hgsc.bcm.edu	37	chr16	17228428	17228428	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	gtgagtgtcacgtcgctcagGctgtggatgccgtcaggctc	5	10	15	11	3	3	1	3	1	0	0	5	2	3	2	1	3	1	3	1	3	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_022166	exon9	c.C1929T	p.S643S	GCTCAGGCTGTGG	.	72	4	31	0	.	.	A	17228428	G	A	17228428	2	1	33	1	0	0	0	0	0	0	0	1	17523	1194	42	3		3	XYLT1	16	17228428	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	12274527	17228428	73126325	128	5136											
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48333669	48333669	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	tccacagcagattcagatacCccaggtcaccactcttgaca	12	8	6	15	0	3	3	2	1	1	2	4	3	4	3	4	1	2	1	4	1	1	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_031490	exon10	c.C1631T	p.P544L	AGATACCCCAGGT	.	31	10	34	0	.	.	T	48333669	C	T	48333669	3	4	33	1	0	0	0	0	1	0	0	0	8938	623	22	3	1669	3	LONP2	16	48333669	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	31105241	48333669	42021084	129	5137											
NKD1	85407	hgsc.bcm.edu	37	chr16	50664815	50664815	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagaagcagcgagcccCgctcaggtatgtgggcatgg	10	5	17	9	2	1	2	1	0	0	2	1	4	1	2	2	4	3	4	2	4	3	1	rs200257763	bycluster	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	NKD1,colon,carcinoma,0,1	NKD1	NM_033119	exon8	c.C689T	p.P230L	GAGCCCCGCTCAG	.	29	2	20	0	.	0	T	50664815	C	T	50664815	3	4	33	1	0	0	0	0	1	0	0	0	10488	652	23	1	719	1	NKD1	16	50664815	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	2331146	50664815	39689938	130	5138											
RPGRIP1L	23322	hgsc.bcm.edu	37	chr16	53726057	53726057	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atacgagattgtacattattGtatggagtttgcctgtaacc	11	15	9	6	1	0	1	0	0	0	1	0	3	0	2	2	1	4	4	2	1	5	8	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RPGRIP1L,NS,carcinoma,0,1	RPGRIP1L	NM_001127897	exon4	c.C450A	p.Y150X	ATTATTGTATGGA	.	65	3	47	0	.	0	T	53726057	G	T	53726057	4	4	33	1	0	0	0	0	0	1	0	0	13602	1372	48	3	3593	3	RPGRIP1L	16	53726057	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	3061242	53726057	36628696	131	5139											
CHST4	10164	hgsc.bcm.edu	37	chr16	71571735	71571735	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tggactgtccctgagcaaatCcactaagagggttgagaagg	12	8	13	8	0	0	3	0	2	0	2	2	5	2	4	2	3	1	2	2	3	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001166395	exon2	c.C1155A	p.I385I	GCAAATCCACTAA	.	37	4	37	0	.	.	A	71571735	C	A	71571735	2	1	33	1	0	0	0	0	0	0	0	1	3428	845	30	3		3	CHST4	16	71571735	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	17845678	71571735	18783018	132	5140											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	83998838	83998838	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	caggactccagccccctcttCcaggtgagcggcttcctgac	6	8	10	17	1	1	2	0	2	1	0	4	3	4	3	5	3	2	1	5	3	0	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_182981	exon6	c.C660A	p.F220L	CCTCTTCCAGGTG	.	33	15	31	0	.	.	A	83998838	C	A	83998838	3	1	33	1	0	0	0	0	1	0	0	0	11336	854	30	3	935	3	OSGIN1	16	83998838	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	12427103	83998838	6355915	133	5141											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18023111	18023111	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acagctaccacgatgggtacGagggcgaggcgcacccttat	10	6	13	12	4	0	0	0	0	0	0	0	3	0	0	2	3	3	3	2	3	3	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_016239	exon2	c.G997A	p.E333K	GGGTACGAGGGCG	.	120	51	74	0	.	.	A	18023111	G	A	18023111	3	1	33	1	0	0	0	0	1	0	0	0	10111	1059	37	1	999	1	MYO15A	17	18023111	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		18023111	63172099	134	5142											
RARA	5914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38510560	38510560	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgcacccagatcctgCggatctgcacgcggtacacg	7	8	10	16	4	2	1	0	0	2	1	4	2	4	2	3	2	4	3	3	2	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RARA,colon,carcinoma,0,1	RARA	NM_000964	exon7	c.C814T	p.R272W	ATCCTGCGGATCT	.	46	18	34	0	.	0	T	38510560	C	T	38510560	3	4	33	1	0	0	0	0	1	0	0	0	13104	759	27	1	1003	1	RARA	17	38510560	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	20487449	38510560	42684650	135	5143											
KRTAP4-2	85291	hgsc.bcm.edu	37	chr17	39334273	39334273	+	Silent	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cacacagactggcagcactgCggtctgcagcagctggacac	10	5	12	14	1	1	1	0	0	1	1	1	2	1	2	0	3	5	5	0	3	0	0	rs201015994		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	KRTAP4-2_ENST00000458321,NS,carcinoma,0,2	KRTAP4-2_ENST00000458321	NM_033062	exon1	c.G144C	p.P48P	GCACTGCGGTCTG	.	93	5	62	0	0.001	0	G	39334273	C	G	39334273	2	3	33	1	0	0	0	0	0	0	0	1	8594	755	27	5		5	KRTAP4-2	17	39334273	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	823713	39334273	41860937	136	5144											
KAT2A	2648	hgsc.bcm.edu	37	chr17	40266620	40266620	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgctcaatcagcttcttgatGatctgagggaaggaagggac	11	9	13	8	1	4	3	2	3	2	0	4	6	4	6	0	3	1	2	0	3	3	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	KAT2A,NS,carcinoma,0,1	KAT2A	NM_021078	exon14	c.C2022A	p.I674I	CTTGATGATCTGA	.	22	2	26	0	.	0	T	40266620	G	T	40266620	2	4	33	1	0	0	0	0	0	0	0	1	8025	1280	45	3		3	KAT2A	17	40266620	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	932347	40266620	40928590	137	5145											
ASB16	92591	hgsc.bcm.edu	37	chr17	42248325	42248325	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	actaggcctcaccgttcctgCcgagacccagctgtccacca	8	7	8	18	2	1	1	1	0	0	1	3	2	3	1	7	1	2	2	7	1	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_080863	exon1	c.C168T	p.C56C	TTCCTGCCGAGAC	.	80	3	59	0	.	.	T	42248325	C	T	42248325	2	4	33	1	0	0	0	0	0	0	0	1	1019	747	26	3		3	ASB16	17	42248325	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1981705	42248325	38946885	138	5146											
SKA2	348235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57232319	57232319	+	Silent	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccggatgtaaccccttacccGaggcggtttagacaccagac	10	7	10	14	3	0	2	0	0	0	2	0	4	0	3	5	3	2	2	5	3	3	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001100595	exon1	c.C126A	p.L42L	TTACCCGAGGCGG	.	100	42	81	0	.	.	T	57232319	G	T	57232319	2	4	33	1	0	0	0	0	0	0	0	1	14408	1045	37	2		2	SKA2	17	57232319	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	14983994	57232319	23962891	139	5147											
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58148096	58148096	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	agctaaaagtgctccaagttCatcagtctgtgttagtttca	11	14	8	8	0	4	0	3	0	1	0	5	0	5	0	1	0	2	5	1	0	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	HEATR6,NS,carcinoma,0,1	HEATR6	NM_022070	exon6	c.G772A	p.E258K	CAAGTTCATCAGT	.	54	17	42	0	.	0	T	58148096	C	T	58148096	3	4	33	1	0	0	0	0	1	0	0	0	7074	835	29	3	2833	3	HEATR6	17	58148096	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	915777	58148096	23047114	140	5148											
ABCA10	10349	hgsc.bcm.edu	37	chr17	67212428	67212428	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatgaaatacaattgggattGatgttatgaccagagccata	15	12	9	5	0	0	4	0	3	0	1	0	5	0	5	2	1	2	1	2	1	6	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_080282	exon8	c.C602A	p.S201X	GGGATTGATGTTA	.	98	5	54	0	.	.	T	67212428	G	T	67212428	4	4	33	1	0	0	0	0	0	1	0	0	29	1294	45	3	4161	3	ABCA10	17	67212428	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	9064332	67212428	13982782	141	5149											
GRB2	2885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	73317898	73317898	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	caccttgaagtgctgcacatCgtttccaaacctgggaggga	10	9	11	11	1	0	1	0	1	0	0	2	3	1	3	3	2	3	3	3	2	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_002086	exon5	c.G310A	p.D104N	GCACATCGTTTCC	.	18	9	17	0	.	.	T	73317898	C	T	73317898	3	4	33	1	0	0	0	0	1	0	0	0	6799	884	31	1	351	1	GRB2	17	73317898	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	6105470	73317898	7877312	142	5150											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78325495	78325495	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctttaaataggtattctgttAtaaatgaaatcaacaaaata	19	14	4	4	0	2	1	1	1	1	0	2	1	2	1	0	1	1	2	0	1	12	8	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001256071	exon32	c.A10195G	p.I3399V	TCTGTTATAAATG	.	139	60	109	0	.	.	G	78325495	A	G	78325495	3	3	33	1	0	0	0	0	1	0	0	0	13529	449	16	4	10636	4	RNF213	17	78325495	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	5007597	78325495	2869715	143	5151											
NARF	26502	bcgsc.ca	37	chr17	80443387	80443387	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagaaacaaagacttccAagaggtcacccttgagaaga	16	8	9	8	0	1	5	1	1	0	5	2	6	2	5	2	1	1	1	2	1	5	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	NARF	NM_012336	exon10	c.A986G	p.Q329R	ACTTCCAAGAGGT	.	62	4	36	0	.	51	G	80443387	G	G	80443387	3	3	33	1	0	0	0	0	1	0	0	0	10215	130	5	4	1166	4	NARF	17	80443387	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	2117892	80443387	751823	144	5152											
LAMA1	284217	ucsc.edu	37	chr18	7037680	7037680	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cctgatggcgcccgcctagtGcatcttgctgagacgggatc	6	9	13	13	3	1	2	0	2	1	1	2	4	1	3	3	2	2	2	3	2	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	LAMA1	NM_005559	exon12	c.C1634T	p.A545V	CCTAGTGCATCTT	.	40	4	27	0	.	458	A	7037680	G	A	7037680	3	1	33	1	0	0	0	0	1	0	0	0	8644	1319	46	3	7801	3	LAMA1	18	7037680	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		7037680	71039568	145	5153											
RNF138	51444	hgsc.bcm.edu	37	chr18	29672848	29672848	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaccacggcctgtcagcacGtgtgagtagacgccccctcc	7	6	12	16	3	1	2	1	1	0	1	2	3	2	3	5	2	1	2	5	2	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RNF138,colon,carcinoma,0,1	RNF138	NM_198128	exon1	c.G109T	p.V37F	CAGCACGTGTGAG	.	50	2	39	0	.	0	T	29672848	G	T	29672848	3	4	33	1	0	0	0	0	1	0	0	0	13493	1159	40	2	111	2	RNF138	18	29672848	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	22635168	29672848	48404400	146	5154											
PIK3C3	5289	hgsc.bcm.edu	37	chr18	39629497	39629497	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ttttaactgttactgcagctGgatattgcgtgatcacctat	9	16	8	8	1	1	1	1	1	0	0	1	2	1	2	1	1	5	3	1	1	4	6	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_002647	exon21	c.G2191T	p.G731X	GCAGCTGGATATT	.	88	4	78	0	.	.	T	39629497	G	T	39629497	4	4	33	1	0	0	0	0	0	1	0	0	11960	1349	47	3	2273	3	PIK3C3	18	39629497	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	9956649	39629497	38447751	147	5155											
MYO5B	4645	hgsc.bcm.edu	37	chr18	47405423	47405423	+	Missense_Mutation	SNP	C	C	G																															tcctcctccagttctttcttCatgagattttccttcacaga																								novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001080467	exon24	c.G3168C	p.M1056I	TTTCTTCATGAGA	.	60	6	55	0	.	.	G	47405423	C	G	47405423	3	3	33	1	0	0	0	0	1	0	0	0	10127	826	29	5	2446	5	MYO5B	18	47405423	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	7775926	47405423	30671825	148	5156	45	2									
MYO5B	4645	hgsc.bcm.edu	37	chr18	47405425	47405425	+	Missense_Mutation	SNP	T	T	G																															ctcctccagttctttcttcaTgagattttccttcacagagt																								rs200219597	bycluster	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	MYO5B,NS,carcinoma,0,1	MYO5B	NM_001080467	exon24	c.A3166C	p.M1056L	TCTTCATGAGATT	.	59	1	55	0	.	0	G	47405425	T	G	47405425	3	3	33	1	0	0	0	0	1	0	0	0	10127	1464	51	4	2448	4	MYO5B	18	47405425	Missense_Mutation	SNP	T	TCGA-ZH-A8Y6-01A-11D-A417-09	2	47405425	30671823	149	5157	45	2									
ZNF516	9658	hgsc.bcm.edu	37	chr18	74090965	74090965	+	Silent	SNP	C	C	G	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggagtgtaggacgggggggCgccccagccacgccgggctg	5	4	20	12	4	0	0	0	0	0	0	0	2	0	2	4	6	1	2	4	6	1	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_014643	exon4	c.G3105C	p.A1035A	GGGGGGCGCCCCA	.	48	5	47	0	.	.	G	74090965	C	G	74090965	2	3	33	1	0	0	0	0	0	0	0	1	18017	755	27	5		5	ZNF516	18	74090965	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	26685540	74090965	3986283	150	5158											
STXBP2	6813	broad.mit.edu	37	chr19	7702047	7702048	+	Frame_Shift_Del	DEL	GG	GG	-																															tcggggaagatggcgccctcGgggctgaaggcggtggtggg																								novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	STXBP2	NM_006949	exon1	c.12_13del	p.4_5del	GCCCTCGGGGCTG	.	12	8	6	0	.	63	-	7702048	GG	-	7702047	7	5	33	1	0	1	0	1	0	0	0	0	15409	1103	39	0	14	0	STXBP2	19	7702047	Frame_Shift_Del	DEL	GG	TCGA-ZH-A8Y6-01A-11D-A417-09		7702047	51426936	151	5159											
OLFM2	93145	broad.mit.edu	37	chr19	10047006	10047006	+	Frame_Shift_Del	DEL	G	G	-																															ggccaggcctgagcacagcaGcagcagcagcggcggcggga																								novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	OLFM2	NM_058164	exon1	c.37delC	p.L13fs	ACAGCAGCAGCAG	.	6	2	7	0	.	42	-	10047006	G	-	10047006	7	5	33	1	0	1	0	1	0	0	0	0	10901	962	34	0	1351	0	OLFM2	19	10047006	Frame_Shift_Del	DEL	G	TCGA-ZH-A8Y6-01A-11D-A417-09	2344959	10047006	49081977	152	5160											
TNPO2	30000	hgsc.bcm.edu	37	chr19	12821525	12821525	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtagtgggagtaggtGgggcagcagttcctcccgga	7	10	17	7	1	0	1	0	1	0	0	2	3	2	3	2	5	1	5	2	5	2	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_013433	exon12	c.C1180A	p.H394N	GTAGGTGGGGCAG	.	85	4	67	0	.	.	T	12821525	G	T	12821525	3	4	33	1	0	0	0	0	1	0	0	0	16396	1348	47	3	1565	3	TNPO2	19	12821525	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	2774519	12821525	46307458	153	5161											
PODNL1	79883	hgsc.bcm.edu	37	chr19	14044766	14044766	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcacggagttgagtctggCggctcagggctcctcggggc	4	8	17	12	3	3	1	2	1	1	0	5	2	4	2	1	6	0	4	1	6	0	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	PODNL1,colon,carcinoma,0,1	PODNL1	NM_024825	exon7	c.G713A	p.R238H	GTCTGGCGGCTCA	.	34	3	33	0	.	0	T	14044766	C	T	14044766	3	4	33	1	0	0	0	0	1	0	0	0	12227	768	27	1	833	1	PODNL1	19	14044766	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1223241	14044766	45084217	154	5162											
NOTCH3	4854	ucsc.edu	37	chr19	15290252	15290252	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ccccgtgctggcagggctggGaggcacactcgtccacgtcg	5	6	15	15	4	0	0	0	0	0	0	3	1	1	1	3	4	1	4	3	4	0	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	NOTCH3	NM_000435	exon21	c.C3383A	p.S1128Y	GGCTGGGAGGCAC	.	42	4	38	0	.	340	T	15290252	G	T	15290252	3	4	33	1	0	0	0	0	1	0	0	0	10597	1174	41	3	3634	3	NOTCH3	19	15290252	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	1245486	15290252	43838731	155	5163											
NWD1	284434	hgsc.bcm.edu	37	chr19	16855309	16855309	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gagtgggaggtattgagggaCcatctgactgccaggccaag	10	7	16	8	0	1	2	0	2	1	0	1	5	1	4	3	4	1	1	3	4	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001007525	exon5	c.C276T	p.D92D	GAGGGACCATCTG	.	52	4	33	0	.	.	T	16855309	C	T	16855309	2	4	33	1	0	0	0	0	0	0	0	1	10829	522	18	3		3	NWD1	19	16855309	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	1565057	16855309	42273674	156	5164											
ZNF430	80264	hgsc.bcm.edu	37	chr19	21240049	21240049	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tacacataaaagaattcataCtggagagaaaccctacagat	19	8	6	8	0	1	3	1	0	0	3	1	5	1	4	1	1	4	0	1	1	7	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_025189	exon5	c.C935T	p.T312I	TTCATACTGGAGA	.	64	4	27	0	.	.	T	21240049	C	T	21240049	3	4	33	1	0	0	0	0	1	0	0	0	17961	565	20	3	953	3	ZNF430	19	21240049	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	4384740	21240049	37888934	157	5165											
ZNF430	80264	hgsc.bcm.edu	37	chr19	21240159	21240159	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agaaaccctacaaatgtgaaGaatgtggcaaagcttttaac	17	9	8	7	0	0	3	0	1	0	2	0	3	0	3	1	1	4	2	1	1	7	3	rs371234614	alternate_allele	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	ZNF430,pharynx,carcinoma,0,1	ZNF430	NM_025189	exon5	c.G1045C	p.E349Q	TGTGAAGAATGTG	.	50	2	49	0	.	0	C	21240159	G	C	21240159	3	2	33	1	0	0	0	0	1	0	0	0	17961	943	33	5	1063	5	ZNF430	19	21240159	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	110	21240159	37888824	158	5166											
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu	37	chr19	33581730	33581730	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cttcacgacagaacagagcaGacaaatctgttcttggtcct	12	10	8	11	1	3	3	1	0	2	3	4	4	4	3	1	1	2	2	1	1	2	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_018025	exon3	c.G253T	p.D85Y	AGAGCAGACAAAT	.	80	4	71	0	.	.	T	33581730	G	T	33581730	3	4	33	1	0	0	0	0	1	0	0	0	6630	942	33	3	263	3	GPATCH1	19	33581730	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	12341571	33581730	25547253	159	5167											
SPTBN4	57731	hgsc.bcm.edu	37	chr19	40993696	40993696	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acatcggggacctctatgtgGacctccgggacggcttcgtg	6	9	14	12	4	1	0	0	0	1	0	4	3	2	3	3	5	0	1	3	5	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_020971	exon3	c.G262T	p.D88Y	TATGTGGACCTCC	.	88	4	89	0	.	.	T	40993696	G	T	40993696	3	4	33	1	0	0	0	0	1	0	0	0	15177	1174	41	3	268	3	SPTBN4	19	40993696	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	7411966	40993696	18135287	160	5168											
EPN1	29924	bcgsc.ca	37	chr19	56200706	56200706	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cgacgcccagctccagctggCccttagtttgagccgagaag	8	7	12	14	3	0	2	0	1	0	1	1	4	1	2	4	1	3	3	4	1	2	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	EPN1	NM_001130072	exon5	c.C647T	p.A216V	AGCTGGCCCTTAG	.	57	5	43	0	.	98	T	56200706	T	T	56200706	3	4	33	1	0	0	0	0	1	0	0	0	5213	739	26	3	1002	3	EPN1	19	56200706	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	15207010	56200706	2928277	161	5169											
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	1532442	1532442	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	agcatcagcaagagagatttCacggatgcgggtggaaaagt	14	7	14	6	2	2	2	2	0	0	2	2	5	2	4	0	3	3	2	0	3	3	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_178460	exon2	c.G316C	p.E106Q	AGATTTCACGGAT	.	69	32	82	0	.	.	G	1532442	C	G	1532442	3	3	33	1	0	0	0	0	1	0	0	0	14390	835	29	5	289	5	SIRPD	20	1532442	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09		1532442	61493078	162	5170											
MCM8	84515	hgsc.bcm.edu;ucsc.edu	37	chr20	5974195	5974195	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatttgggaacctagattttGagcgatcccagcatggttct	10	13	10	8	1	1	2	0	1	1	1	2	4	2	3	2	2	3	2	2	2	3	5	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_032485	exon18	c.G2284T	p.E762X	GATTTTGAGCGAT	.	40	4	25	0	.	.	T	5974195	G	T	5974195	4	4	33	1	0	0	0	0	0	1	0	0	9443	1291	45	3	2350	3	MCM8	20	5974195	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	4441753	5974195	57051325	163	5171											
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	19956130	19956130	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aagaaaaggagcagctccttCgtgctgcccaagctcgtcaa	12	7	10	12	2	1	1	1	0	0	1	4	2	2	2	2	1	5	4	2	1	5	1	rs368824899		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	RIN2_ENST00000255006,NS,carcinoma,0,2	RIN2_ENST00000255006	NM_001242581	exon8	c.C1608T	p.F536F	CTCCTTCGTGCTG	.	47	20	28	0	.	0	T	19956130	C	T	19956130	2	4	33	1	0	0	0	0	0	0	0	1	13424	883	31	1		1	RIN2	20	19956130	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	13981935	19956130	43069390	164	5172											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	34091510	34091510	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	aaggtaggtgagaccagcctCctcctgtcccagcgagagca	10	6	12	13	1	0	2	0	1	0	2	3	4	3	2	5	2	3	2	5	2	2	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_007186	exon30	c.C5313T	p.L1771L	CAGCCTCCTCCTG	.	10	5	10	0	.	.	T	34091510	C	T	34091510	2	4	33	1	0	0	0	0	0	0	0	1	3274	842	30	3		3	CEP250	20	34091510	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	14135380	34091510	28934010	165	5173											
IFT52	51098	broad.mit.edu	37	chr20	42264632	42264632	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcctcagtttgagacgccGctgccaacccttcagcctgc	7	8	9	17	2	2	1	2	1	0	1	2	2	2	1	5	0	5	2	5	0	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	IFT52	NM_016004	exon11	c.G990A	p.P330P	GACGCCGCTGCCA	.	32	3	31	0	.	40	A	42264632	G	A	42264632	2	1	33	1	0	0	0	0	0	0	0	1	7605	1074	38	1		1	IFT52	20	42264632	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	8173122	42264632	20760888	166	5174											
OGFR	11054	hgsc.bcm.edu	37	chr20	61444660	61444660	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	catcggagaccccaggccccCgcccggcaggacctgcaggg	7	2	14	18	3	0	1	0	0	0	1	1	3	0	2	6	5	1	2	6	5	0	0	rs61743079	bycluster	TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	OGFR,NS,neuroblastoma,0,1	OGFR	NM_007346	exon7	c.C1693A	p.R565S	GGCCCCCGCCCGG	.	28	4	18	1	0.019	0	A	61444660	C	A	61444660	3	1	33	1	0	0	0	0	1	0	0	0	10891	652	23	2	1719	2	OGFR	20	61444660	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	19180028	61444660	1580860	167	5175											
XKR3	150165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	17288751	17288751	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	gcccccacaataataaagctGatggtaaatgacatccagaa	17	7	7	10	0	0	3	0	2	0	1	1	3	1	3	3	1	1	2	3	1	7	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_175878	exon2	c.C213T	p.I71I	AAAGCTGATGGTA	.	93	32	75	0	.	.	A	17288751	G	A	17288751	2	1	33	1	0	0	0	0	0	0	0	1	17492	1280	45	3		3	XKR3	22	17288751	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09		17288751	34015815	168	5176											
ASCC2	84164	broad.mit.edu	37	chr22	30212002	30212002	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caagagctggtacctgaaggAtggtaggcagggtttcatcc	10	9	14	8	0	1	2	1	1	0	1	2	3	2	3	2	5	2	5	2	5	4	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	ASCC2	NM_032204	exon6	c.T602C	p.I201T	TGAAGGATGGTAG	.	74	3	59	0	.	53	G	30212002	A	G	30212002	3	3	33	1	0	0	0	0	1	0	0	0	1031	333	12	4	1731	4	ASCC2	22	30212002	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	12923251	30212002	21092564	169	5177											
HORMAD2	150280	hgsc.bcm.edu	37	chr22	30518061	30518061	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agtgggatttgtctccactgGctttcatagcatgaaagtaa	11	13	10	7	0	2	1	1	1	1	0	3	2	2	2	1	2	1	3	1	2	3	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	HORMAD2,colon,carcinoma,0,1	HORMAD2	NM_152510	exon10	c.G677T	p.G226V	CCACTGGCTTTCA	.	47	2	51	0	.	0	T	30518061	G	T	30518061	3	4	33	1	0	0	0	0	1	0	0	0	7328	1203	42	3	711	3	HORMAD2	22	30518061	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	306059	30518061	20786505	170	5178											
LDOC1L	84247	hgsc.bcm.edu	37	chr22	44893393	44893393	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctgggcattcggagacgctGccaaggctgggctttcagct	6	10	14	11	2	2	1	1	0	1	1	3	2	2	1	1	4	2	5	1	4	1	2	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	LDOC1L,caecum,carcinoma,0,1	LDOC1L	NM_032287	exon2	c.C44A	p.A15E	GACGCTGCCAAGG	.	48	2	32	0	.	0	T	44893393	G	T	44893393	3	4	33	1	0	0	0	0	1	0	0	0	8749	1319	46	3	679	3	LDOC1L	22	44893393	Missense_Mutation	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	14375332	44893393	6411173	171	5179											
SMC1B	27127	broad.mit.edu	37	chr22	45795219	45795219	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	gaggcctcttctgatttaaaAgggtttcaaccgatctgaaa	12	12	9	8	1	4	2	1	2	3	0	4	4	4	2	2	2	1	1	2	2	4	4	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	SMC1B	NM_148674	exon6	c.T869C	p.L290P	TTTAAAAGGGTTT	.	83	3	74	0	.	215	G	45795219	A	G	45795219	3	3	33	1	0	0	0	0	1	0	0	0	14836	72	3	4	2918	4	SMC1B	22	45795219	Missense_Mutation	SNP	A	TCGA-ZH-A8Y6-01A-11D-A417-09	901826	45795219	5509347	172	5180											
MAP3K15	389840	hgsc.bcm.edu	37	chrX	19378938	19378938	+	Frame_Shift_Del	DEL	A	A	-																															gaccgcactccagagtctgcAgaggagaccacccctgggaa																								novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_001001671	exon29	c.3872delG	p.C1291fs	GTCTGCAGAGGAG	.	28	11	10	3	.	.	-	19378938	A	-	19378938	7	5	33	1	0	1	0	1	0	0	0	0	9299	188	7	0	74	0	MAP3K15	23	19378938	Frame_Shift_Del	DEL	A	TCGA-ZH-A8Y6-01A-11D-A417-09		19378938	135891622	173	5181											
ESX1	80712	broad.mit.edu	37	chrX	103495187	103495187	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcgccatgggcggccCggttggcacaggcgccatgg	6	4	17	14	4	0	0	0	0	0	0	0	0	0	0	3	7	0	2	3	7	0	1	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	ESX1	NM_153448	exon4	c.G943T	p.G315W	GCGGCCCGGTTGG	.	12	3	11	0	.	57	A	103495187	C	A	103495187	3	1	33	1	0	0	0	0	1	0	0	0	5291	652	23	2	281	2	ESX1	23	103495187	Missense_Mutation	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	84116249	103495187	51775373	174	5182											
WDR44	54521	broad.mit.edu	37	chrX	117480529	117480529	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgtgcacctagggggCggctaccccgtggggtaagt	8	7	17	9	2	0	1	0	0	0	1	0	2	0	1	3	5	2	3	3	5	4	3	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	WDR44	NM_001184965	exon1	c.C63T	p.G21G	AGGGGGCGGCTAC	.	205	4	154	0	.	188	T	117480529	C	T	117480529	2	4	33	1	0	0	0	0	0	0	0	1	17356	755	27	1		1	WDR44	23	117480529	Silent	SNP	C	TCGA-ZH-A8Y6-01A-11D-A417-09	13985342	117480529	37790031	175	5183											
HMGB3	3149	hgsc.bcm.edu;bcgsc.ca	37	chrX	150156360	150156360	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagaagaGgaggaggaggaggaggagga	17	0	24	0	0	0	3	0	0	0	3	0	14	0	13	0	10	0	0	0	10	3	0	novel		TCGA-ZH-A8Y6-01A-11D-A417-09	TCGA-ZH-A8Y6-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ce462b65-84ae-4dfb-91ec-54f5e6e3b86d	1ccf932f-0579-49a6-88c9-8221b3199710	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG	.	43	4	37	0	.	.	A	150156360	G	A	150156360	2	1	33	1	0	0	0	0	0	0	0	1	7268	991	35	3		3	HMGB3	23	150156360	Silent	SNP	G	TCGA-ZH-A8Y6-01A-11D-A417-09	32675831	150156360	5114200	176	5184											
PLCH2	9651	hgsc.bcm.edu	37	chr1	2430086	2430086	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	atgctgggggaccgtggggaGgtgggggccagccccacaca	7	4	19	11	1	0	0	0	0	0	0	0	2	0	2	4	7	2	1	4	7	0	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,6	.	NM_014638	exon17	c.G2349C	p.E783D	TGGGGAGGTGGGG	.	5	2	7	1	.	131	C	2430086	G	C	2430086	3	2	34	1	0	0	0	0	1	0	0	0	12086	1014	35	5	2415	5	PLCH2	1	2430086	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		2430086	246820535	1	5185											
KIF1B	23095	hgsc.bcm.edu;bcgsc.ca	37	chr1	10351202	10351202	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gagaagcttcgtaaaacagaGgccatcagaatggagaggtc	15	6	13	7	1	1	4	1	0	0	4	3	6	1	4	1	3	2	2	1	3	4	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_183416	exon14	c.G1359T	p.E453D	AACAGAGGCCATC	.	85	4	97	0	.	.	T	10351202	G	T	10351202	3	4	34	1	0	0	0	0	1	0	0	0	8326	991	35	3	1409	3	KIF1B	1	10351202	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	7921116	10351202	238899419	2	5186											
PADI2	11240	hgsc.bcm.edu	37	chr1	17422416	17422416	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtaccttctttgggttGttcttctccaccacaccatc	6	15	6	14	0	3	0	0	0	3	0	5	0	3	0	4	2	1	3	4	2	2	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PADI2,NS,carcinoma,0,1	PADI2	NM_007365	exon4	c.C399A	p.N133K	TGGGTTGTTCTTC	.	27	2	74	0	.	0	T	17422416	G	T	17422416	3	4	34	1	0	0	0	0	1	0	0	0	11425	1368	48	3	1650	3	PADI2	1	17422416	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	7071214	17422416	231828205	3	5187											
TCEB3	6924	bcgsc.ca	37	chr1	24082492	24082492	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taacaaagaatatccagttcGcacatgccaataagcccaaa	18	7	5	11	1	0	1	0	0	0	1	2	1	1	1	3	0	3	2	3	0	7	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TCEB3	NM_003198	exon8	c.G2029T	p.A677S	CAGTTCGCACATG	.	50	4	45	0	.	61	T	24082492	T	T	24082492	3	4	34	1	0	0	0	0	1	0	0	0	15741	1087	38	2	2059	2	TCEB3	1	24082492	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	6660076	24082492	225168129	4	5188											
TMEM69	51249	hgsc.bcm.edu	37	chr1	46159032	46159032	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agacacagtgctatcatacaTccccctgcagctttaaaaag	14	9	6	12	0	1	1	1	0	0	1	2	1	2	1	2	0	4	3	2	0	5	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TMEM69,NS,carcinoma,0,1	TMEM69	NM_016486	exon3	c.T199C	p.S67P	CATACATCCCCCT	.	40	2	44	0	.	0	C	46159032	T	C	46159032	3	2	34	1	0	0	0	0	1	0	0	0	16258	1435	50	4	205	4	TMEM69	1	46159032	Missense_Mutation	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	22076540	46159032	203091589	5	5189											
FAM73A	374986	hgsc.bcm.edu	37	chr1	78272787	78272787	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	agagaacttatacttaatggGtaggaatgagatgataacat	17	11	10	3	0	0	3	0	2	0	2	0	6	0	4	0	2	3	1	0	2	7	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FAM73A,NS,carcinoma,0,1	FAM73A	NM_198549	exon5	c.637+1G>T	.	TAATGGGTAGGAA	.	50	2	46	1	.	0	T	78272787	G	T	78272787	5	4	34	1	0	0	0	0	0	0	1	0	5651	1275	44	3	656	3	FAM73A	1	78272787	Splice_Site	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	32113755	78272787	170977834	6	5190											
RPF1	80135	hgsc.bcm.edu	37	chr1	84948633	84948633	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gtacccaagaccattgacaaCcagcgagtgtatgatgaaac	15	7	9	10	1	0	4	0	3	0	1	0	5	0	4	3	0	4	2	3	0	5	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_025065	exon3	c.C321T	p.N107N	TGACAACCAGCGA	.	95	4	102	0	.	.	T	84948633	C	T	84948633	2	4	34	1	0	0	0	0	0	0	0	1	13598	506	18	3		3	RPF1	1	84948633	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	6675846	84948633	164301988	7	5191											
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	92428423	92428423	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacttcagtatctacaaaaaGttgtcctaaaggatttatgg	15	13	7	6	0	2	0	1	0	1	0	3	1	3	1	1	2	2	2	1	2	8	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001242806	exon2	c.G112C	p.V38L	CAAAAAGTTGTCC	.	109	19	84	0	.	.	C	92428423	G	C	92428423	3	2	34	1	0	0	0	0	1	0	0	0	1510	1029	36	5	114	5	BRDT	1	92428423	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	7479790	92428423	156822198	8	5192											
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	102290693	102290693	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aataccagtgaggacagcagAcagattccttatttcctcct	12	11	7	11	0	0	3	0	1	0	2	3	4	3	4	4	1	2	1	4	1	3	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_058170	exon4	c.T481C	p.S161P	CAGCAGACAGATT	.	69	10	67	0	.	.	G	102290693	A	G	102290693	3	3	34	1	0	0	0	0	1	0	0	0	10902	275	10	4	907	4	OLFM3	1	102290693	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	9862270	102290693	146959928	9	5193											
GJA5	2702	hgsc.bcm.edu	37	chr1	147231066	147231066	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gcacagtgtgcatggcgtggCccatgtacaccagagagggc	9	6	15	11	1	0	1	0	0	0	1	0	2	0	1	2	3	2	3	2	3	1	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	GJA5,NS,carcinoma,0,1	GJA5	NM_005266	exon2	c.G281T	p.G94V	GCGTGGCCCATGT	.	29	2	29	0	.	0	A	147231066	C	A	147231066	3	1	34	1	0	0	0	0	1	0	0	0	6446	739	26	3	799	3	GJA5	1	147231066	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	44940373	147231066	102019555	10	5194											
TPM3	7170	hgsc.bcm.edu	37	chr1	154144580	154144580	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	tcatccatctctcggcaacgGctgttagtgatagtcacggg	8	11	11	11	3	3	1	2	1	1	0	6	1	4	1	1	3	1	3	1	3	3	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001043352	exon5	c.C456T	p.S152S	GCAACGGCTGTTA	.	58	3	61	0	.	.	A	154144580	G	A	154144580	2	1	34	1	0	0	0	0	0	0	0	1	16468	1217	42	3		3	TPM3	1	154144580	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	6913514	154144580	95106041	11	5195											
CD5L	922	hgsc.bcm.edu	37	chr1	157803043	157803043	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacccccaaaatctgtgCtggcactgctccagggactg	10	8	10	13	0	1	1	0	1	1	0	2	2	2	2	3	2	3	3	3	2	3	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CD5L,NS,carcinoma,-1,1	CD5L	NM_005894	exon5	c.G978T	p.Q326H	TCTGTGCTGGCAC	.	37	2	19	0	.	-1	A	157803043	C	A	157803043	3	1	34	1	0	0	0	0	1	0	0	0	3049	796	28	3	73	3	CD5L	1	157803043	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	3658463	157803043	91447578	12	5196											
IFI16	3428	hgsc.bcm.edu	37	chr1	158985757	158985757	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcaaaactgaaggagcaGaggcaactcctggagctcag	13	6	12	10	0	2	2	2	1	0	1	3	4	3	4	1	3	4	3	1	3	4	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	IFI16,bladder,carcinoma,0,1	IFI16	NM_001206567	exon3	c.G361T	p.E121X	GGAGCAGAGGCAA	.	36	2	23	0	.	0	T	158985757	G	T	158985757	4	4	34	1	0	0	0	0	0	1	0	0	7555	943	33	3	367	3	IFI16	1	158985757	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1182714	158985757	90264864	13	5197											
SLAMF6	114836	hgsc.bcm.edu	37	chr1	160458958	160458958	+	Nonsense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctaggttccttgcggactCtgctgttaacataggaaggc	8	12	11	10	1	2	0	0	0	2	0	3	2	3	2	1	4	3	3	1	4	4	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001184714	exon6	c.G799T	p.E267X	CGGACTCTGCTGT	.	70	4	40	0	.	.	A	160458958	C	A	160458958	4	1	34	1	0	0	0	0	0	1	0	0	14423	927	32	3	211	3	SLAMF6	1	160458958	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1473201	160458958	88791663	14	5198											
DUSP12	11266	hgsc.bcm.edu;bcgsc.ca	37	chr1	161726605	161726605	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatgcagtgccaagttGggttccttcaactggtatgg	10	11	11	9	0	1	0	1	0	0	0	2	0	2	0	3	3	3	4	3	3	5	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_007240	exon6	c.G891T	p.L297F	CAAGTTGGGTTCC	.	62	4	49	0	.	.	T	161726605	G	T	161726605	3	4	34	1	0	0	0	0	1	0	0	0	4838	1339	47	3	913	3	DUSP12	1	161726605	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1267647	161726605	87524016	15	5199											
ADCY10	55811	hgsc.bcm.edu;bcgsc.ca	37	chr1	167779005	167779005	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	ctgcctgctacaattttttcCcatgatgggagactcaagat	10	13	8	10	0	1	3	1	1	0	2	2	4	2	3	2	1	3	1	2	1	3	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018417	exon33	c.G4743T	p.W1581C	TTTTTCCCATGAT	.	74	4	62	0	.	.	A	167779005	C	A	167779005	3	1	34	1	0	0	0	0	1	0	0	0	292	624	22	3	93	3	ADCY10	1	167779005	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	6052400	167779005	81471616	16	5200											
HMCN1	83872	hgsc.bcm.edu;bcgsc.ca	37	chr1	186158652	186158652	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtccttaggttctgccTcaagaactgtccacccaatg	8	13	8	12	0	2	1	1	0	1	1	4	1	4	1	4	1	2	2	4	1	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_031935	exon107	c.T16550C	p.L5517P	TCTGCCTCAAGAA	.	83	4	70	0	.	.	C	186158652	T	C	186158652	3	2	34	1	0	0	0	0	1	0	0	0	7261	1551	54	4	16976	4	HMCN1	1	186158652	Missense_Mutation	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	18379647	186158652	63091969	17	5201											
BIRC6	57448	hgsc.bcm.edu	37	chr2	32774511	32774511	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cttctcagtcagtcctgcctCatcccagccatgtcatctta	7	13	5	16	0	5	0	4	0	2	0	8	0	7	0	4	0	2	0	4	0	1	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	BIRC6_ENST00000421745,NS,carcinoma,0,2	BIRC6_ENST00000421745	NM_016252	exon65	c.C13107T	p.L4369L	CTGCCTCATCCCA	.	47	2	51	0	.	0	T	32774511	C	T	32774511	2	4	34	1	0	0	0	0	0	0	0	1	1437	813	29	3		3	BIRC6	2	32774511	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		32774511	210424862	18	5202											
KIAA1841	84542	hgsc.bcm.edu	37	chr2	61319611	61319611	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	ttctccagagataagacatgGgatgttcatgagtatttgaa	13	13	10	5	0	2	4	1	2	1	2	3	6	2	5	1	1	0	2	1	1	3	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	KIAA1841_ENST00000402291,NS,carcinoma,0,4	KIAA1841_ENST00000402291	NM_032506	exon11	c.G1101A	p.W367X	GACATGGGATGTT	.	40	2	63	0	.	0	A	61319611	G	A	61319611	4	1	34	1	0	0	0	0	0	1	0	0	8303	1241	43	3	1135	3	KIAA1841	2	61319611	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	28545100	61319611	181879762	19	5203											
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	65305018	65305018	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	taagcaatttaagaaagataTagatgaacatcagtctctga	18	11	7	5	0	2	5	1	2	1	3	3	5	2	5	0	0	2	1	0	0	7	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015147	exon5	c.T2024C	p.I675T	AAGATATAGATGA	.	83	22	83	0	.	.	C	65305018	T	C	65305018	3	2	34	1	0	0	0	0	1	0	0	0	3280	1406	49	4	2038	4	CEP68	2	65305018	Missense_Mutation	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	3985407	65305018	177894355	20	5204											
ZNF638	27332	hgsc.bcm.edu	37	chr2	71650945	71650945	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgctgaaaagaaactttcagCcaaggaatttggtctgctta	13	12	9	7	0	2	2	1	1	1	1	2	3	2	3	1	2	4	2	1	2	6	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF638,NS,carcinoma,0,1	ZNF638	NM_014497	exon22	c.C4301A	p.A1434D	TTTCAGCCAAGGA	.	32	2	23	0	.	0	A	71650945	C	A	71650945	3	1	34	1	0	0	0	0	1	0	0	0	18112	739	26	3	4383	3	ZNF638	2	71650945	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	6345927	71650945	171548428	21	5205											
CIAO1	9391	hgsc.bcm.edu	37	chr2	96933103	96933103	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctgaaggccaccagCgcaccgtgcggaaggtagcc	8	7	12	14	3	1	1	0	1	1	0	2	2	2	2	5	3	3	2	5	3	3	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004804	exon2	c.C184A	p.R62S	CACCAGCGCACCG	.	28	4	35	0	.	.	A	96933103	C	A	96933103	3	1	34	1	0	0	0	0	1	0	0	0	3440	768	27	2	190	2	CIAO1	2	96933103	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	25282158	96933103	146266270	22	5206											
ZC3H8	84524	bcgsc.ca	37	chr2	112991747	112991747	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	acaaatttgttttcccttgcGttccactgtatgttggttga	7	18	8	8	1	0	1	0	1	0	0	2	1	2	1	2	1	1	5	2	1	2	8	rs371803574	alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZC3H8,NS,carcinoma,0,1	ZC3H8	NM_032494	exon5	c.C571A	p.R191S	CCTTGCGTTCCAC	.	66	4	60	0	.	17	T	112991747	T	T	112991747	3	4	34	1	0	0	0	0	1	0	0	0	17633	1145	40	2	320	2	ZC3H8	2	112991747	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	16058644	112991747	130207626	23	5207											
NEB	4703	hgsc.bcm.edu	37	chr2	152426643	152426643	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	gcctgaatcacatcgttctgGtcgggcatgcaggtccactg	7	10	12	12	2	2	1	1	1	1	0	5	1	3	1	2	3	1	3	2	3	1	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	NEB_ENST00000427231,NS,carcinoma,0,3	NEB_ENST00000427231	NM_001271208	exon109	c.C17382A	p.D5794E	GTTCTGGTCGGGC	.	35	2	38	0	.	0	T	152426643	G	T	152426643	3	4	34	1	0	0	0	0	1	0	0	0	10349	1252	44	3	8600	3	NEB	2	152426643	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	39434896	152426643	90772730	24	5208											
SPATS2L	26010	bcgsc.ca	37	chr2	201337558	201337558	+	Missense_Mutation	SNP	C	G	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gcactttattattgcagttaCacatccaaagaacaactatt	15	13	4	9	0	0	1	0	0	0	1	1	1	1	1	1	0	4	3	1	0	7	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	SPATS2L	NM_001100423	exon12	c.C1064G	p.T355R	CAGTTACACATCC	.	18	3	24	0	.	88	G	201337558	G	G	201337558	3	3	34	1	0	0	0	0	1	0	0	0	15076	478	17	5	1102	5	SPATS2L	2	201337558	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	48910915	201337558	41861815	25	5209											
ALS2CR11	151254	hgsc.bcm.edu	37	chr2	202359173	202359173	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggtaaagatacatttggtaGattttcttttaaactattct	12	19	6	4	0	2	2	0	0	2	2	2	2	2	2	0	2	2	2	0	2	7	10	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ALS2CR11_ENST00000439140,NS,carcinoma,0,1	ALS2CR11_ENST00000439140	NM_001168221	exon15	c.C1891A	p.L631I	TTGGTAGATTTTC	.	47	3	76	0	.	0	T	202359173	G	T	202359173	3	4	34	1	0	0	0	0	1	0	0	0	548	933	33	3	3579	3	ALS2CR11	2	202359173	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1021615	202359173	40840200	26	5210											
ERBB4	2066	hgsc.bcm.edu	37	chr2	212566887	212566887	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cttgaggataagcaaggacaGgccactaaggagggggaagt	14	5	16	6	0	0	1	0	1	0	0	0	5	0	5	1	6	1	1	1	6	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ERBB4,caecum,carcinoma,0,1	ERBB4	NM_001042599	exon12	c.C1294A	p.L432M	AGGACAGGCCACT	.	41	2	52	0	.	0	T	212566887	G	T	212566887	3	4	34	1	0	0	0	0	1	0	0	0	5237	991	35	3	2700	3	ERBB4	2	212566887	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	10207714	212566887	30632486	27	5211											
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	228148934	228148934	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtctgttagggagcccTggaattccaggagtaaaggg	9	10	14	8	0	1	0	0	0	1	0	3	3	3	3	3	4	1	2	3	4	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000091	exon34	c.T2754C	p.P918P	GAGCCCTGGAATT	.	62	4	71	0	.	.	C	228148934	T	C	228148934	2	2	34	1	0	0	0	0	0	0	0	1	3714	1567	55	4		4	COL4A3	2	228148934	Silent	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	15582047	228148934	15050439	28	5212											
NGEF	25791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233756101	233756101	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ttgaggcgtgtgatcctctgGaaaggcaggatgaggaagga	11	8	17	5	1	1	3	0	3	1	0	2	7	2	7	1	6	0	1	1	6	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_019850	exon8	c.C1239T	p.F413F	CCTCTGGAAAGGC	.	34	8	33	0	.	.	A	233756101	G	A	233756101	2	1	34	1	0	0	0	0	0	0	0	1	10441	1165	41	3		3	NGEF	2	233756101	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	5607167	233756101	9443272	29	5213											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238268788	238268788	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgccgttcacaccaggCggaccacgctcaccctgttg	7	8	11	15	3	2	1	2	1	0	0	2	2	2	2	4	2	1	3	4	2	0	2	rs368711215		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	COL6A3,colon,carcinoma,0,1	COL6A3	NM_004369	exon17	c.G6225A	p.P2075P	ACCAGGCGGACCA	.	33	6	35	0	.	0	T	238268788	C	T	238268788	2	4	34	1	0	0	0	0	0	0	0	1	3724	755	27	1		1	COL6A3	2	238268788	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	4512687	238268788	4930585	30	5214											
RAD54L2	23132	hgsc.bcm.edu	37	chr3	51624525	51624525	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggaggaggaggaggAggtggcagtggaggagtgtg	11	4	25	1	0	0	1	0	0	0	1	0	9	0	9	0	10	0	1	0	10	0	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	RAD54L2,NS,carcinoma,0,1	RAD54L2	NM_015106	exon2	c.A89T	p.E30V	AGGAGGAGGTGGC	.	43	3	59	0	.	0	T	51624525	A	T	51624525	3	4	34	1	0	0	0	0	1	0	0	0	13046	304	11	5	91	5	RAD54L2	3	51624525	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09		51624525	146397905	31	5215											
CCDC66	285331	hgsc.bcm.edu	37	chr3	56653888	56653888	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	acatggtgaaaaatagggatCgacagcaagcaatccttaag	17	7	10	7	1	0	1	0	1	0	0	2	3	1	2	1	2	2	2	1	2	6	2	rs374852204		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CCDC66_ENST00000394672,NS,carcinoma,0,2	CCDC66_ENST00000394672	NM_001141947	exon17	c.C2719T	p.R907X	AGGGATCGACAGC	.	28	2	43	0	.	0	T	56653888	C	T	56653888	4	4	34	1	0	0	0	0	0	1	0	0	2858	876	31	1	2785	1	CCDC66	3	56653888	Nonsense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	5029363	56653888	141368542	32	5216											
PROS1	5627	hgsc.bcm.edu	37	chr3	93605180	93605180	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	atacaagcttggatcattacCggtttaatgagttcactttc	11	15	7	8	1	2	1	2	1	0	0	3	2	2	2	1	2	3	3	1	2	4	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PROS1,NS,carcinoma,0,1	PROS1	NM_000313	exon11	c.G1323A	p.P441P	CATTACCGGTTTA	.	35	2	71	0	.	0	T	93605180	C	T	93605180	2	4	34	1	0	0	0	0	0	0	0	1	12610	666	23	1		1	PROS1	3	93605180	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	36951292	93605180	104417250	33	5217											
MUC4	4585	hgsc.bcm.edu	37	chr3	195505863	195505863	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcGgtgacaggaagaggggtggt	9	8	21	3	1	0	3	0	2	0	1	1	6	0	6	0	7	1	1	0	7	2	0	rs113561118		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12588T	p.T4196T	AGTGTCGGTGACA	.	81	4	73	1	.	0	A	195505863	G	A	195505863	2	1	34	1	0	0	0	0	0	0	0	1	10026	1103	39	1		1	MUC4	3	195505863	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	101900683	195505863	2516567	34	5218											
KIAA0226	9711	broad.mit.edu	37	chr3	197403835	197403835	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctcccccttcctggtcgcaGtcaggtcattcagtgagtac	6	11	10	14	1	3	1	3	1	0	0	6	1	5	1	3	2	1	3	3	2	1	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	KIAA0226	NM_014687	exon18	c.C2567A	p.T856N	GTCGCAGTCAGGT	.	31	3	48	0	.	136	T	197403835	G	T	197403835	3	4	34	1	0	0	0	0	1	0	0	0	8204	1029	36	3	363	3	KIAA0226	3	197403835	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1897972	197403835	618595	35	5219											
GABRA4	2557	hgsc.bcm.edu	37	chr4	46930465	46930465	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tctttatcctctgcagtcttGatccaaacacgtgacgagta	10	13	7	11	2	3	2	0	2	3	0	5	3	5	2	2	0	2	2	2	0	3	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000809	exon9	c.C1442A	p.S481X	AGTCTTGATCCAA	.	53	4	83	0	.	.	T	46930465	G	T	46930465	4	4	34	1	0	0	0	0	0	1	0	0	6198	1294	45	3	226	3	GABRA4	4	46930465	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		46930465	144223811	36	5220											
UGT2B15	7366	bcgsc.ca	37	chr4	69519938	69519938	+	Missense_Mutation	SNP	C	A	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	cctcatagatgccattggttCcaccatgagttataaaagct	12	12	7	10	0	1	2	1	1	0	1	2	2	2	2	4	1	2	3	4	1	4	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	UGT2B15	NM_001076	exon5	c.G1130T	p.G377V	TTGGTTCCACCAT	.	81	4	135	0	.	48	A	69519938	A	A	69519938	3	1	34	1	0	0	0	0	1	0	0	0	17018	855	30	3	2087	3	UGT2B15	4	69519938	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	22589473	69519938	121634338	37	5221											
ANKRD17	26057	hgsc.bcm.edu	37	chr4	74019647	74019647	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaattcattagaatgcGtattaatgccagccccattt	12	15	5	9	1	1	1	1	0	0	1	1	1	1	1	3	0	3	1	3	0	6	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ANKRD17,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ANKRD17	NM_198889	exon6	c.C1184A	p.T395K	GAATGCGTATTAA	.	35	2	70	0	.	0	T	74019647	G	T	74019647	3	4	34	1	0	0	0	0	1	0	0	0	642	1145	40	2	6743	2	ANKRD17	4	74019647	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	4499709	74019647	117134629	38	5222											
LRIT3	345193	hgsc.bcm.edu	37	chr4	110788871	110788871	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaaggtcgttgaccctGctatagtgcttctggatcca	8	13	10	10	1	2	1	1	1	1	0	4	2	3	2	2	2	2	3	2	2	3	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	LRIT3,ear,carcinoma,0,1	LRIT3	NM_198506	exon3	c.G664A	p.A222T	GACCCTGCTATAG	.	34	3	46	1	.	0	A	110788871	G	A	110788871	3	1	34	1	0	0	0	0	1	0	0	0	8994	1319	46	3	535	3	LRIT3	4	110788871	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	36769224	110788871	80365405	39	5223											
TLL1	7092	hgsc.bcm.edu;bcgsc.ca	37	chr4	166981259	166981259	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaggagtaccctcctaataaGaactgtgtgtggcaagtggt	12	10	12	7	0	0	1	0	0	0	1	1	2	1	2	2	3	2	2	2	3	6	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012464	exon15	c.G1926T	p.K642N	TAATAAGAACTGT	.	51	4	66	0	.	.	T	166981259	G	T	166981259	3	4	34	1	0	0	0	0	1	0	0	0	16005	933	33	3	1984	3	TLL1	4	166981259	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	56192388	166981259	24173017	40	5224											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	9063091	9063091	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcggggttgttgcaaacaCgcttccggttccgaatgccc	6	11	12	12	4	0	0	0	0	0	0	3	1	2	0	3	3	3	6	3	3	2	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_003966	exon18	c.G2426A	p.R809H	CAAACACGCTTCC	.	49	10	47	0	.	.	T	9063091	C	T	9063091	3	4	34	1	0	0	0	0	1	0	0	0	14091	536	19	1	822	1	SEMA5A	5	9063091	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		9063091	171852169	41	5225											
ZFR	51663	hgsc.bcm.edu	37	chr5	32407029	32407029	+	Silent	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gctgttgcagcagcagcagcAgctgctgctgctgcctgctt	5	10	13	13	0	0	0	0	0	0	0	0	0	0	0	1	0	11	12	1	0	0	2	rs139769264		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZFR,NS,carcinoma,0,2	ZFR	NM_016107	exon6	c.T882A	p.A294A	AGCAGCAGCTGCT	.	28	2	22	0	0.000	0	T	32407029	A	T	32407029	2	4	34	1	0	0	0	0	0	0	0	1	17717	175	7	5		5	ZFR	5	32407029	Silent	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	23343938	32407029	148508231	42	5226											
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145610369	145610369	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ttactgtgatcgcacctgctCaccactctgaaaacacaact	12	10	5	14	1	2	2	1	2	1	0	3	2	2	2	2	0	4	2	2	0	4	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018989	exon6	c.C739G	p.H247D	CCTGCTCACCACT	.	29	9	40	0	.	.	G	145610369	C	G	145610369	3	3	34	1	0	0	0	0	1	0	0	0	13179	826	29	5	761	5	RBM27	5	145610369	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	113203340	145610369	35304891	43	5227											
EYS	346007	hgsc.bcm.edu	37	chr6	66005908	66005908	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgctacagttacaattgtgcGaaagggccaggcagaggcca	12	6	13	10	2	0	1	0	0	0	1	0	2	0	1	2	3	3	3	2	3	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	EYS_ENST00000370621,caecum,carcinoma,0,2	EYS_ENST00000370621	NM_001142800	exon12	c.C1871A	p.S624X	TTGTGCGAAAGGG	.	21	2	51	0	.	0	T	66005908	G	T	66005908	4	4	34	1	0	0	0	0	0	1	0	0	5360	1059	37	2	7536	2	EYS	6	66005908	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		66005908	105109159	44	5228											
FBXL4	26235	hgsc.bcm.edu	37	chr6	99323408	99323408	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	caagtttgggagctggtgtgCcagtctggtgaagcacccgg	7	9	16	9	1	1	1	0	1	1	0	1	2	1	2	2	4	3	3	2	4	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FBXL4,colon,carcinoma,0,1	FBXL4	NM_012160	exon8	c.G1585A	p.A529T	GGTGTGCCAGTCT	.	40	2	53	0	.	0	T	99323408	C	T	99323408	3	4	34	1	0	0	0	0	1	0	0	0	5754	739	26	3	288	3	FBXL4	6	99323408	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	33317500	99323408	71791659	45	5229											
POPDC3	64208	hgsc.bcm.edu	37	chr6	105609709	105609709	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	aagatgataaatggctccttCggcctcttgcttccaggttg	8	13	10	10	1	1	2	0	1	1	1	4	2	3	2	3	3	1	3	3	3	3	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	POPDC3,NS,NS,0,2	POPDC3	NM_022361	exon2	c.G76A	p.E26K	CTCCTTCGGCCTC	.	36	2	39	0	.	0	T	105609709	C	T	105609709	3	4	34	1	0	0	0	0	1	0	0	0	12304	893	31	1	811	1	POPDC3	6	105609709	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	6286301	105609709	65505358	46	5230											
DSE	29940	hgsc.bcm.edu	37	chr6	116756770	116756770	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	gtatgatggcagcttgaaatCggttcctcctccagactttg	8	13	10	10	1	0	3	0	2	0	1	4	3	3	3	3	2	1	4	3	2	2	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	DSE,NS,carcinoma,0,1	DSE	NM_001080976	exon6	c.C1139T	p.S380L	TGAAATCGGTTCC	.	54	3	39	0	.	0	T	116756770	C	T	116756770	3	4	34	1	0	0	0	0	1	0	0	0	4800	893	31	1	1157	1	DSE	6	116756770	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	11147061	116756770	54358297	47	5231											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	157517340	157517340	+	Frame_Shift_Del	DEL	C	C	-																															ttatgacgcaaggacagatgCccaacagcagcatgcaggac																								novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_020732	exon16	c.3903delG	p.M1301fs	CAGATGCCCAACA	.	32	11	41	0	.	.	-	157517340	C	-	157517340	7	5	34	1	0	1	0	1	0	0	0	0	911	739	26	0	3966	0	ARID1B	6	157517340	Frame_Shift_Del	DEL	C	TCGA-ZH-A8Y8-01A-51D-A417-09	40760570	157517340	13597727	48	5232											
CAMK2B	816	hgsc.bcm.edu;bcgsc.ca	37	chr7	44302636	44302636	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gcttcagaaggcggcagatcCgagcctctctctccagcttc	7	9	10	15	2	3	2	1	0	2	2	7	3	4	2	3	2	2	3	3	2	1	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_172081	exon3	c.G188T	p.R63L	CAGATCCGAGCCT	.	55	5	80	0	.	.	A	44302636	C	A	44302636	3	1	34	1	0	0	0	0	1	0	0	0	2618	652	23	2	1899	2	CAMK2B	7	44302636	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		44302636	114836027	49	5233											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	87053267	87053267	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gaaaatgccggctgaagcccCccattggcaatggcacatac	12	6	10	13	1	0	1	0	1	0	0	0	2	0	1	4	3	3	3	4	3	5	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018850	exon17	c.G2166A	p.G722G	AAGCCCCCCATTG	.	42	10	60	0	.	.	T	87053267	C	T	87053267	2	4	34	1	0	0	0	0	0	0	0	1	43	610	22	3		3	ABCB4	7	87053267	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	42750631	87053267	72085396	50	5234											
GIGYF1	64599	bcgsc.ca	37	chr7	100285182	100285182	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	gccagccaggggggggccagCccctttccccatcagcctca	6	5	12	18	0	2	0	2	0	0	0	3	0	3	0	8	4	3	0	8	4	0	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	GIGYF1	NM_022574	exon4	c.G319A	p.A107T	GGCCAGCCCCTTT	.	12	3	24	0	.	113	T	100285182	T	T	100285182	3	4	34	1	0	0	0	0	1	0	0	0	6419	739	26	3	2872	3	GIGYF1	7	100285182	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	13231915	100285182	58853481	51	5235											
NAMPT	10135	hgsc.bcm.edu;bcgsc.ca	37	chr7	105894878	105894878	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagatctcttgtcaacttctGtagcaaacctccaccagaac	12	10	6	13	0	3	2	1	0	2	2	5	3	4	2	3	0	4	2	3	0	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_005746	exon9	c.C1162A	p.Q388K	ACTTCTGTAGCAA	.	66	4	60	0	.	.	T	105894878	G	T	105894878	3	4	34	1	0	0	0	0	1	0	0	0	10197	1386	48	3	325	3	NAMPT	7	105894878	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	5609696	105894878	53243785	52	5236											
PRSS37	136242	hgsc.bcm.edu	37	chr7	141536247	141536247	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	atacatatttgtaaacattgGtgtagatgccgacgtcccct	11	13	8	9	2	0	1	0	0	0	1	1	2	1	1	3	1	3	2	3	1	5	6	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PRSS37,NS,carcinoma,0,1	PRSS37	NM_001008270	exon5	c.C656A	p.T219N	ACATTGGTGTAGA	.	44	2	47	0	.	0	T	141536247	G	T	141536247	3	4	34	1	0	0	0	0	1	0	0	0	12675	1261	44	3	55	3	PRSS37	7	141536247	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	35641369	141536247	17602416	53	5237											
ESYT2	57488	broad.mit.edu;bcgsc.ca	37	chr7	158560431	158560435	+	Frame_Shift_Del	DEL	ATATT	ATATT	-																															gggaagcaccagatagtttgAtattatatccaaaatgatag																								novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ESYT2	NM_020728	exon8	c.978_982del	p.326_328del	AGTTTGATATTAT	.	72	9	83	0	.	70	-	158560435	ATATT	-	158560431	7	5	34	1	0	1	0	1	0	0	0	0	5293	333	12	0	1759	0	ESYT2	7	158560431	Frame_Shift_Del	DEL	ATATT	TCGA-ZH-A8Y8-01A-51D-A417-09	17024184	158560431	578232	54	5238											
DEFA1	1667	hgsc.bcm.edu	37	chr8	6873578	6873578	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tagcgacgttctcctgcaatGcacgctggtattctgcaata	9	12	9	11	3	2	0	0	0	2	0	3	1	2	0	1	1	4	6	1	1	5	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	DEFA3,NS,carcinoma,0,1	DEFA3	NM_004084	exon3	c.C219T	p.C73C	TGCAATGCACGCT	.	69	3	70	0	.	0	A	6873578	G	A	6873578	2	1	34	1	0	0	0	0	0	0	0	1	4411	1311	46	3		3	DEFA1	8	6873578	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		6873578	139490444	55	5239											
ESRP1	54845	hgsc.bcm.edu	37	chr8	95653675	95653675	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtggatctggccaacaaGaaggtatttctccacatttt	10	13	9	9	1	2	1	0	0	2	1	4	2	2	2	2	3	1	1	2	3	4	4	rs371931710	alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ESRP1_ENST00000433389,NS,carcinoma,0,2	ESRP1_ENST00000433389	NM_001122827	exon1	c.G129T	p.K43N	CAACAAGAAGGTA	.	44	2	38	0	.	0	T	95653675	G	T	95653675	3	4	34	1	0	0	0	0	1	0	0	0	5286	933	33	3	131	3	ESRP1	8	95653675	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	88780097	95653675	50710347	56	5240											
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113988300	113988300	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atctgcaggtgtgctagcaaCagcaatagcaccagtggtag	12	8	12	9	0	1	0	0	0	1	0	1	0	1	0	1	2	6	6	1	2	5	3	rs112359948		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	CSMD3	NM_198123	exon7	c.G1108A	p.V370I	TAGCAACAGCAAT	.	44	7	39	0	C|0.500;T|0.500	2325	T	113988300	C	T	113988300	3	4	34	1	0	0	0	0	1	0	0	0	3971	478	17	3	10275	3	CSMD3	8	113988300	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	18334625	113988300	32375722	57	5241											
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86592623	86592623	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctctgaagcagaatgCgtaattcaaccatctcatca	12	11	6	12	1	4	2	3	1	2	1	5	2	4	2	2	0	4	3	2	0	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_031262	exon4	c.G137A	p.R46H	AGAATGCGTAATT	.	30	5	37	0	.	.	T	86592623	C	T	86592623	3	4	34	1	0	0	0	0	1	0	0	0	7310	768	27	1	1348	1	HNRNPK	9	86592623	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		86592623	54620808	58	5242											
SVEP1	79987	hgsc.bcm.edu	37	chr9	113166721	113166721	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	agtatatgtgttatgttttcCgggagaggacattttttagg	9	17	12	3	1	0	1	0	0	0	1	1	3	1	2	1	3	0	3	1	3	4	8	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SVEP1,NS,carcinoma,0,1	SVEP1	NM_153366	exon39	c.G9552A	p.P3184P	GTTTTCCGGGAGA	.	46	2	66	1	.	0	T	113166721	C	T	113166721	2	4	34	1	0	0	0	0	0	0	0	1	15476	639	23	1		1	SVEP1	9	113166721	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	26574098	113166721	28046710	59	5243											
ITIH5	80760	hgsc.bcm.edu	37	chr10	7608296	7608296	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggatggtgatagtgcGcaagtaagtgcgctgtttct	9	12	15	5	2	1	2	0	2	1	0	1	4	1	3	0	2	2	4	0	2	3	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ITIH5,NS,adenocarcinoma,+1,1	ITIH5	NM_030569	exon13	c.C2224T	p.R742C	TAGTGCGCAAGTA	.	36	2	36	0	.	+1	A	7608296	G	A	7608296	3	1	34	1	0	0	0	0	1	0	0	0	7951	1087	38	1	654	1	ITIH5	10	7608296	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		7608296	127926451	60	5244											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	34671618	34671618	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgaggtagtcttgagtgagAgtctatctgctcaggcgggt	8	12	15	6	1	4	3	1	3	3	1	4	4	4	3	0	3	1	2	0	3	2	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001184788	exon9	c.T1249G	p.S417A	AGTGAGAGTCTAT	.	41	6	58	0	.	.	C	34671618	A	C	34671618	3	2	34	1	0	0	0	0	1	0	0	0	11490	304	11	4	2924	4	PARD3	10	34671618	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	27063322	34671618	100863129	61	5245											
NCOA4	8031	hgsc.bcm.edu	37	chr10	51582263	51582263	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagagaggctgtatctccatGccagagcaggtaaaatatca	15	8	10	8	0	2	2	1	0	1	2	3	3	2	2	2	2	2	4	2	2	5	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	NCOA4_ENST00000452682,NS,carcinoma,0,1	NCOA4_ENST00000452682	NM_001145261	exon7	c.G609T	p.M203I	CTCCATGCCAGAG	.	47	2	49	0	.	0	T	51582263	G	T	51582263	3	4	34	1	0	0	0	0	1	0	0	0	10278	1319	46	3	631	3	NCOA4	10	51582263	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	16910645	51582263	83952484	62	5246											
PRKG1	5592	hgsc.bcm.edu	37	chr10	53893621	53893621	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgtgagaacagcaaaCgtaattgctgcagaagctgt	15	8	12	6	1	0	3	0	1	0	3	0	5	0	3	0	0	6	5	0	0	5	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PRKG1,rectum,carcinoma,0,1	PRKG1	NM_006258	exon8	c.C957T	p.N319N	AGCAAACGTAATT	.	34	2	43	0	.	0	T	53893621	C	T	53893621	2	4	34	1	0	0	0	0	0	0	0	1	12574	535	19	1		1	PRKG1	10	53893621	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	2311358	53893621	81641126	63	5247											
TACR2	6865	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	71174776	71174776	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	caccctggtccatggtgacgGtggagtagaagcactgaggg	9	7	16	9	1	0	3	0	2	0	1	1	4	1	4	2	5	1	2	2	5	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001057	exon2	c.C512A	p.T171N	GTGACGGTGGAGT	.	32	4	33	0	.	.	T	71174776	G	T	71174776	3	4	34	1	0	0	0	0	1	0	0	0	15563	1261	44	3	700	3	TACR2	10	71174776	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	17281155	71174776	64359971	64	5248											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88230836	88230836	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	attcgaaaactgggcatggcAcatttagtagccaagctaat	14	10	9	8	1	0	0	0	0	0	0	1	1	0	0	1	2	3	4	1	2	6	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015045	exon8	c.T2055G	p.C685W	CATGGCACATTTA	.	32	6	44	0	.	.	C	88230836	A	C	88230836	3	2	34	1	0	0	0	0	1	0	0	0	17308	157	6	4	1565	4	WAPAL	10	88230836	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	17056060	88230836	47303911	65	5249											
TRPM5	29850	hgsc.bcm.edu	37	chr11	2443523	2443523	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtcaaagagcacagacGgggccactccgctcggcacc	10	3	13	15	3	1	2	1	0	0	2	3	2	2	2	3	4	1	4	3	4	1	0	rs200361945	bycluster;alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRPM5,bladder,carcinoma,0,1	TRPM5	NM_014555	exon2	c.C146A	p.P49Q	ACAGACGGGGCCA	.	49	3	53	0	.	0	T	2443523	G	T	2443523	3	4	34	1	0	0	0	0	1	0	0	0	16650	1116	39	2	3443	2	TRPM5	11	2443523	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		2443523	132562993	66	5250											
OR51F2	119694	hgsc.bcm.edu	37	chr11	4842747	4842747	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	cagtactggatctccatcccTttttgtctcctatatgttgt	6	18	6	11	0	2	0	0	0	2	0	5	1	3	1	3	1	1	2	3	1	3	6	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR51F2,NS,carcinoma,0,1	OR51F2	NM_001004753	exon1	c.T132C	p.P44P	CATCCCTTTTTGT	.	48	2	55	0	.	0	C	4842747	T	C	4842747	2	2	34	1	0	0	0	0	0	0	0	1	11145	1596	56	4		4	OR51F2	11	4842747	Silent	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	2399224	4842747	130163769	67	5251											
TRIM5	85363	hgsc.bcm.edu	37	chr11	5686556	5686556	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atattatctgtggtttcggaGagctcacttgtctcttatct	7	18	8	8	1	4	1	1	0	3	1	6	2	4	1	0	2	1	2	0	2	3	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRIM5_ENST00000380034,NS,carcinoma,0,2	TRIM5_ENST00000380034	NM_033034	exon8	c.C965A	p.S322Y	TTCGGAGAGCTCA	.	35	2	47	0	.	0	T	5686556	G	T	5686556	3	4	34	1	0	0	0	0	1	0	0	0	16586	942	33	3	610	3	TRIM5	11	5686556	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	843809	5686556	129319960	68	5252											
OR2AG1	144125	hgsc.bcm.edu	37	chr11	6806283	6806283	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cacagcatggagctctggaaCttcaccttgggaagtggctt	9	10	12	10	0	2	0	1	0	1	0	2	3	2	3	1	4	3	3	1	4	2	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR2AG1,NS,carcinoma,0,1	OR2AG1	NM_001004489	exon1	c.C15A	p.N5K	CTGGAACTTCACC	.	26	2	44	0	.	0	A	6806283	C	A	6806283	3	1	34	1	0	0	0	0	1	0	0	0	11032	564	20	3	17	3	OR2AG1	11	6806283	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1119727	6806283	128200233	69	5253											
OR2D3	120775	hgsc.bcm.edu	37	chr11	6942250	6942250	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgttcttttttcttGtgccaaacaggtaaacaggc	12	14	8	7	0	2	0	0	0	2	0	2	0	2	0	1	2	3	2	1	2	5	6	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR2D3,right_upper_lobe,carcinoma,0,1	OR2D3	NM_001004684	exon1	c.G18T	p.L6F	TTTCTTGTGCCAA	.	44	2	67	0	.	0	T	6942250	G	T	6942250	3	4	34	1	0	0	0	0	1	0	0	0	11043	1368	48	3	20	3	OR2D3	11	6942250	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	135967	6942250	128064266	70	5254											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	8752429	8752429	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ggccccgggaatggcgtgctCtgggcaagggggaggcaggc	6	4	21	10	2	1	0	0	0	1	0	1	2	1	2	2	8	1	3	2	8	2	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_005418	exon6	c.G408C	p.Q136H	CGTGCTCTGGGCA	.	31	9	34	0	.	.	G	8752429	C	G	8752429	3	3	34	1	0	0	0	0	1	0	0	0	15276	912	32	5	3077	5	ST5	11	8752429	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1810179	8752429	126254087	71	5255											
NAV2	89797	ucsc.edu;bcgsc.ca	37	chr11	20101694	20101694	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcatcaacagtgccaccaGccactccagcgtgggcagca	11	4	10	16	1	1	0	1	0	0	0	2	0	2	0	4	1	6	3	4	1	1	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	NAV2	NM_001244963	exon27	c.G5432T	p.S1811I	CCACCAGCCACTC	.	26	4	27	0	.	255	T	20101694	G	T	20101694	3	4	34	1	0	0	0	0	1	0	0	0	10232	971	34	3	5471	3	NAV2	11	20101694	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	11349265	20101694	114904822	72	5256											
ZNF408	79797	hgsc.bcm.edu	37	chr11	46724728	46724728	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agctgtagcagtggtgacagAagtggagtctgctgtacagc	10	9	15	7	0	1	2	0	1	1	1	1	3	1	3	0	2	5	5	0	2	3	2	rs376220307	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF408,caecum,carcinoma,0,1	ZNF408	NM_024741	exon4	c.A587C	p.E196A	TGACAGAAGTGGA	.	18	2	15	0	.	0	C	46724728	A	C	46724728	3	2	34	1	0	0	0	0	1	0	0	0	17945	246	9	4	633	4	ZNF408	11	46724728	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	26623034	46724728	88281788	73	5257											
STX3	6809	hgsc.bcm.edu	37	chr11	59560628	59560628	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	tgttggagagtggcaacccgGccatcttcacttctggggtg	6	11	14	10	1	3	1	1	0	2	1	3	2	3	1	2	5	1	2	2	5	1	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004177	exon7	c.G523A	p.A175T	AACCCGGCCATCT	.	45	4	37	0	.	.	A	59560628	G	A	59560628	3	1	34	1	0	0	0	0	1	0	0	0	15402	1203	42	3	549	3	STX3	11	59560628	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	12835900	59560628	75445888	74	5258											
SDHAF2	54949	hgsc.bcm.edu	37	chr11	61205106	61205106	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttcatttcagatgcttgctCtgtcaaggcacagcctattg	8	14	9	10	0	4	1	3	0	1	1	4	1	4	1	1	1	3	4	1	1	2	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SDHAF2,colon,carcinoma,-1,1	SDHAF2	NM_017841	exon2	c.C46A	p.L16M	CTTGCTCTGTCAA	.	26	2	19	0	.	-1	A	61205106	C	A	61205106	3	1	34	1	0	0	0	0	1	0	0	0	14018	912	32	3	52	3	SDHAF2	11	61205106	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1644478	61205106	73801410	75	5259											
CTSW	1521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65647690	65647690	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	caggacctaggtccccagccGctagagctgaaagaggcctt	10	6	12	13	1	0	3	0	1	0	2	1	4	1	4	5	3	2	2	5	3	3	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001335	exon2	c.G105A	p.P35P	CCAGCCGCTAGAG	.	104	30	96	0	.	.	A	65647690	G	A	65647690	2	1	34	1	0	0	0	0	0	0	0	1	4066	1074	38	1		1	CTSW	11	65647690	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	4442584	65647690	69358826	76	5260											
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	85597249	85597249	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	tttattttcaacagatatgcGcatgcaaataagtaatgctg	14	14	7	6	1	1	1	1	0	0	1	1	1	1	1	0	0	4	4	0	0	6	7	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CCDC83,NS,carcinoma,0,4	CCDC83	NM_173556	exon5	c.G350T	p.R117L	ATATGCGCATGCA	.	53	4	67	0	.	0	T	85597249	G	T	85597249	3	4	34	1	0	0	0	0	1	0	0	0	2877	1087	38	2	364	2	CCDC83	11	85597249	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	19949559	85597249	49409267	77	5261											
TYR	7299	hgsc.bcm.edu	37	chr11	89017970	89017970	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggctccgaaggcaccGtcctcttcaagaagtttatc	9	10	10	12	2	2	1	1	0	1	1	5	2	4	1	3	2	0	4	3	2	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000372	exon4	c.G1214A	p.R405H	GGCACCGTCCTCT	.	96	5	93	0	.	.	A	89017970	G	A	89017970	3	1	34	1	0	0	0	0	1	0	0	0	16875	1145	40	1	1228	1	TYR	11	89017970	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	3420721	89017970	45988546	78	5262											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	0	18	14	9	0	0	0	0	0	0	0	0	0	0	0	0	0	9	13	0	0	0	4	rs61749250	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	45	2	44	1	.	0	T	95825254	C	T	95825254	2	4	34	1	0	0	0	0	0	0	0	1	9256	796	28	3		3	MAML2	11	95825254	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	6807284	95825254	39181262	79	5263											
CWF19L2	143884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	107325251	107325251	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tttttcttttctttctttgcTttttttgaatgcttgtcttt	2	29	4	6	0	4	1	0	1	4	0	4	1	4	1	0	0	2	2	0	0	1	11	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_152434	exon3	c.A264G	p.K88K	CTTTGCTTTTTTT	.	43	11	56	0	.	.	C	107325251	T	C	107325251	2	2	34	1	0	0	0	0	0	0	0	1	4095	1606	56	4		4	CWF19L2	11	107325251	Silent	SNP	T	TCGA-ZH-A8Y8-01A-51D-A417-09	11499997	107325251	27681265	80	5264											
MPZL2	10205	bcgsc.ca	37	chr11	118133264	118133264	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gaactgcagtttccagagaaGgatggaggcatcgtaccgct	11	8	13	9	2	0	1	0	0	0	1	2	5	1	3	2	3	3	5	2	3	3	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	MPZL2	NM_005797	exon3	c.C325A	p.L109I	AGAGAAGGATGGA	.	46	4	52	0	.	20	T	118133264	T	T	118133264	3	4	34	1	0	0	0	0	1	0	0	0	9799	1000	35	3	334	3	MPZL2	11	118133264	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	10808013	118133264	16873252	81	5265											
TRIM29	23650	hgsc.bcm.edu	37	chr11	120008077	120008077	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgcacgggacacttgcgggcCtcaaagtcccggatgggctc	7	7	14	13	3	1	0	1	0	0	0	3	2	2	2	2	4	2	2	2	4	1	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRIM29,NS,carcinoma,0,1	TRIM29	NM_012101	exon1	c.G663T	p.E221D	GCGGGCCTCAAAG	.	28	2	38	0	.	0	A	120008077	C	A	120008077	3	1	34	1	0	0	0	0	1	0	0	0	16564	680	24	3	1139	3	TRIM29	11	120008077	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1874813	120008077	14998439	82	5266											
PRB2	653247	hgsc.bcm.edu	37	chr12	11546444	11546444	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	aggtgggggaccttggggctGgttgcctccttgtgggggtg	2	11	21	7	0	0	0	0	0	0	0	1	1	1	1	3	8	1	2	3	8	0	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_006248	exon3	c.C568A	p.Q190K	GGGGCTGGTTGCC	.	122	6	105	1	.	.	T	11546444	G	T	11546444	3	4	34	1	0	0	0	0	1	0	0	0	12495	1357	47	3	686	3	PRB2	12	11546444	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		11546444	122305451	83	5267											
PIK3C2G	5288	hgsc.bcm.edu	37	chr12	18524178	18524178	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgctcactgtaaaactgtttGggattgcctgtgcaaccaac	10	12	9	10	0	1	0	1	0	0	0	1	1	1	1	2	1	6	4	2	1	4	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,2	.	NM_004570	exon12	c.G1690T	p.G564W	CTGTTTGGGATTG	.	40	2	55	0	.	315	T	18524178	G	T	18524178	3	4	34	1	0	0	0	0	1	0	0	0	11959	1348	47	3	1732	3	PIK3C2G	12	18524178	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	6977734	18524178	115327717	84	5268											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25380277	25380278	+	Missense_Mutation	DNP	GA	GA	TT																															cattgcactgtactcctcttGacctgctgtgtcgagaatat																								novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	KRAS_ENST00000256078,caecum,carcinoma,0,10	KRAS_ENST00000256078	NM_004985	exon3	c.T180A	p.Q61K	CTCTTGACCTGCT	.	40	8	39	0	.	0	TT	25380278	GA	TT	25380277	3	4	34	1	0	0	0	0	1	0	0	0	8481	1299	45	3	521	3	KRAS	12	25380277	Missense_Mutation	DNP	GA	TCGA-ZH-A8Y8-01A-51D-A417-09	6856099	25380277	108471618	85	5269											
WNT10B	7480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	49360090	49360090	+	Nonsense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ggagcccatagtggggtctcGctcacagaagtcaggagact	10	7	14	10	1	3	2	2	0	1	2	4	4	3	3	1	4	1	1	1	4	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	WNT10B,NS,carcinoma,0,2	WNT10B	NM_003394	exon5	c.C958T	p.R320X	GGTCTCGCTCACA	.	104	21	124	0	.	0	A	49360090	G	A	49360090	4	1	34	1	0	0	0	0	0	1	0	0	17443	1095	38	1	215	1	WNT10B	12	49360090	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	23979813	49360090	84491805	86	5270											
EP400	57634	hgsc.bcm.edu;bcgsc.ca	37	chr12	132475225	132475225	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaattagaagaaaaaaggaaGaaggccttaaatttacagaa	22	7	9	3	0	0	4	0	0	0	4	0	6	0	5	1	2	1	0	1	2	12	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015409	exon9	c.G2595T	p.K865N	AAGGAAGAAGGCC	.	82	4	122	0	.	.	T	132475225	G	T	132475225	3	4	34	1	0	0	0	0	1	0	0	0	5177	933	33	3	2622	3	EP400	12	132475225	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	83115135	132475225	1376670	87	5271											
NUFIP1	26747	hgsc.bcm.edu	37	chr13	45563441	45563441	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	taagtggtggtggcggtggcGgcagcattgcccagaacatc	8	8	16	9	2	0	1	0	0	0	1	1	1	0	1	1	6	3	2	1	6	2	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012345	exon1	c.C131T	p.P44L	GGTGGCGGCAGCA	.	53	4	66	0	.	.	A	45563441	G	A	45563441	3	1	34	1	0	0	0	0	1	0	0	0	10796	1116	39	1	1396	1	NUFIP1	13	45563441	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		45563441	69606437	88	5272											
ACIN1	22985	hgsc.bcm.edu;ucsc.edu	37	chr14	23549704	23549704	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	tcctgggatcttgtaaatctCcctcctctctctaacacctc	7	14	4	16	0	4	0	0	0	4	0	9	1	6	1	4	1	1	1	4	1	3	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ACIN1,caecum,carcinoma,0,1	ACIN1	NM_001164814	exon6	c.G1014T	p.G338G	AAATCTCCCTCCT	.	41	4	72	0	.	0	A	23549704	C	A	23549704	2	1	34	1	0	0	0	0	0	0	0	1	142	842	30	3		3	ACIN1	14	23549704	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		23549704	83799836	89	5273											
FITM1	161247	hgsc.bcm.edu	37	chr14	24600887	24600887	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cctctgccttgctgtactttGgaagcgaacaggccgcccgc	6	9	11	15	3	1	0	0	0	1	0	1	2	1	1	4	2	5	2	4	2	3	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FITM1,face,carcinoma,0,1	FITM1	NM_203402	exon1	c.G115T	p.G39X	TACTTTGGAAGCG	.	46	2	69	0	.	0	T	24600887	G	T	24600887	4	4	34	1	0	0	0	0	0	1	0	0	5931	1349	47	3	117	3	FITM1	14	24600887	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1051183	24600887	82748653	90	5274											
CCDC88C	440193	broad.mit.edu	37	chr14	91744298	91744298	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gctgcggttgctctcctccaGgaactcctccaaggtgacca	7	9	10	15	1	1	1	0	1	1	0	5	2	4	2	5	3	3	3	5	3	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	CCDC88C	NM_001080414	exon29	c.C5026A	p.L1676M	CCTCCAGGAACTC	.	38	3	72	0	.	192	T	91744298	G	T	91744298	3	4	34	1	0	0	0	0	1	0	0	0	2885	991	35	3	1068	3	CCDC88C	14	91744298	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	67143411	91744298	15605242	91	5275											
INF2	64423	hgsc.bcm.edu	37	chr14	105180791	105180791	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cccagtgcccccagcccttgGagggggcctggccggtgact	4	6	15	16	1	0	1	0	1	0	0	0	2	0	2	6	5	2	0	6	5	0	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_022489	exon21	c.G3292T	p.E1098X	CCCTTGGAGGGGG	.	54	4	77	0	.	.	T	105180791	G	T	105180791	4	4	34	1	0	0	0	0	0	1	0	0	7778	1175	41	3	3374	3	INF2	14	105180791	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	13436493	105180791	2168749	92	5276											
RYR3	6263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	33923424	33923424	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcacagaaccctcttggccCtggggtgccacattgctcat	7	10	10	14	0	3	1	2	0	1	1	3	1	3	1	3	3	3	1	3	3	1	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001243996	exon23	c.C2797A	p.L933M	TTGGCCCTGGGGT	.	44	4	34	0	.	.	A	33923424	C	A	33923424	3	1	34	1	0	0	0	0	1	0	0	0	13822	680	24	3	2887	3	RYR3	15	33923424	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		33923424	68607968	93	5277											
TP53BP1	7158	hgsc.bcm.edu	37	chr15	43766909	43766910	+	Frame_Shift_Ins	INS	-	-	T																															tgtgggactgctaggaacgaINStaaaaggagtagatcggaaa																								novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001141979	exon10	c.1142_1143insA	p.I381fs	GGAACGATAAAAG	.	41	10	30	0	.	.	T	43766910	-	T	43766909	7	5	34	1	0	1	1	0	0	0	0	0	16444	333	12	0	4867	0	TP53BP1	15	43766909	Frame_Shift_Ins	INS	-	TCGA-ZH-A8Y8-01A-51D-A417-09	9843485	43766909	58764483	94	5278											
SHC4	399694	hgsc.bcm.edu	37	chr15	49255141	49255141	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacttggccctgtgcagCatcccggggtgcccgaagag	6	8	14	13	2	0	1	0	0	0	1	1	2	1	1	3	3	4	3	3	3	2	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SHC4,NS,carcinoma,0,1	SHC4	NM_203349	exon1	c.G72A	p.M24I	GTGCAGCATCCCG	.	59	3	50	0	.	0	T	49255141	C	T	49255141	3	4	34	1	0	0	0	0	1	0	0	0	14328	710	25	3	1868	3	SHC4	15	49255141	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	5488232	49255141	53276251	95	5279											
MAPK6	5597	bcgsc.ca	37	chr15	52338592	52338592	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaaagatctttccttttgatGccagttttcttccttgttta	7	20	6	8	0	2	2	0	1	2	1	4	3	4	2	3	0	1	2	3	0	2	9	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	MAPK6	.	.	.	.	TTTGATGCCAGTT	.	65	4	61	0	.	70	T	52338592	T	T	52338592	3	4	34	1	0	0	0	0	1	0	0	0	9331	1334	46	3		3	MAPK6	15	52338592	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	3083451	52338592	50192800	96	5280											
SPG21	51324	hgsc.bcm.edu	37	chr15	65267060	65267060	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	atttctgggccaaaaagcctCccaaagaagcgccaaaaaga	17	5	8	11	1	1	2	0	0	1	2	2	2	2	2	4	1	2	0	4	1	6	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001127889	exon5	c.G332T	p.G111V	AAGCCTCCCAAAG	.	85	4	71	0	.	.	A	65267060	C	A	65267060	3	1	34	1	0	0	0	0	1	0	0	0	15099	855	30	3	614	3	SPG21	15	65267060	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	12928468	65267060	37264332	97	5281											
GRIN2A	2903	bcgsc.ca	37	chr16	9943747	9943747	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tggttgtcatccggctcacaGtcggagaaggacttgtacct	8	11	12	10	2	2	1	2	0	0	1	4	3	3	2	2	4	1	3	2	4	2	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	GRIN2A	NM_000833	exon6	c.C1194A	p.D398E	CTCACAGTCGGAG	.	36	4	25	0	.	366	T	9943747	T	T	9943747	3	4	34	1	0	0	0	0	1	0	0	0	6820	1020	36	3	3236	3	GRIN2A	16	9943747	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		9943747	80411006	98	5282											
CDH1	999	hgsc.bcm.edu	37	chr16	68835581	68835581	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	tctgccctgcagtgaattttGaagattgcaccggtcgacaa	10	11	10	10	2	1	3	0	2	1	1	2	4	1	3	2	1	3	2	2	1	3	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CDH1,caecum,carcinoma,-2,1	CDH1	NM_004360	exon3	c.G172C	p.E58Q	AATTTTGAAGATT	.	48	2	43	0	.	-2	C	68835581	G	C	68835581	3	2	34	1	0	0	0	0	1	0	0	0	3117	1291	45	5	182	5	CDH1	16	68835581	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	58891834	68835581	21519172	99	5283											
ATP2A3	489	bcgsc.ca	37	chr17	3832041	3832041	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcaccaccacccactGgcgcccgctcagtggggtca	7	5	12	17	2	2	0	2	0	0	0	2	1	2	1	4	4	1	2	4	4	0	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ATP2A3	NM_174956	exon20	c.C2896A	p.Q966K	CCCACTGGCGCCC	.	56	4	51	0	.	148	T	3832041	T	T	3832041	3	4	34	1	0	0	0	0	1	0	0	0	1137	1357	47	3	322	3	ATP2A3	17	3832041	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		3832041	77363169	100	5284											
CLDN7	1366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7164180	7164180	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cctccacccatggctatacgGgccttcttcactttgtcgtc	5	13	7	16	2	2	0	1	0	1	0	5	0	3	0	4	2	1	1	4	2	2	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001185023	exon2	c.C348T	p.A116A	TATACGGGCCTTC	.	44	14	62	0	.	.	A	7164180	G	A	7164180	2	1	34	1	0	0	0	0	0	0	0	1	3513	1219	43	3		3	CLDN7	17	7164180	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	3332139	7164180	74031030	101	5285											
KRBA2	124751	hgsc.bcm.edu	37	chr17	8274670	8274670	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccagcattgtgtctctGtagcaatccttttgagagcc	7	14	9	11	0	1	1	0	1	1	1	4	2	3	1	3	0	3	3	3	0	2	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_213597	exon1	c.C183A	p.Y61X	GTCTCTGTAGCAA	.	76	3	70	0	.	.	T	8274670	G	T	8274670	4	4	34	1	0	0	0	0	0	1	0	0	8483	1372	48	3	1303	3	KRBA2	17	8274670	Nonsense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1110490	8274670	72920540	102	5286											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	77073889	77073889	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcgccagccccctctgagcaGccagaggccccggactttgt	6	7	11	17	2	1	2	0	1	1	1	2	3	1	3	6	2	3	1	6	2	0	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001042573	exon3	c.G359A	p.S120N	TGAGCAGCCAGAG	.	26	8	20	0	.	.	A	77073889	G	A	77073889	3	1	34	1	0	0	0	0	1	0	0	0	5146	971	34	3	369	3	ENGASE	17	77073889	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	68799219	77073889	4121321	103	5287											
EMILIN2	84034	broad.mit.edu	37	chr18	2884988	2884988	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	agtgaacttcagacctagatAtgtcactaggtataagacag	15	10	9	7	0	2	4	2	1	0	3	2	4	2	4	1	1	1	1	1	1	6	6	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	EMILIN2	NM_032048	exon3	c.A284T	p.Y95F	CTAGATATGTCAC	.	52	5	70	0	.	97	T	2884988	A	T	2884988	3	4	34	1	0	0	0	0	1	0	0	0	5122	449	16	5	294	5	EMILIN2	18	2884988	Missense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09		2884988	75192260	104	5288											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	22669523	22669523	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagagaaaatatgctgctgcAacttgtttgcttgaacaaat	14	12	8	7	0	0	2	0	1	0	1	0	3	0	2	0	0	6	5	0	0	6	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015461	exon7	c.T3812A	p.L1271X	TGCTGCAACTTGT	.	49	9	58	0	.	.	T	22669523	A	T	22669523	4	4	34	1	0	0	0	0	0	1	0	0	18022	131	5	5	131	5	ZNF521	18	22669523	Nonsense_Mutation	SNP	A	TCGA-ZH-A8Y8-01A-51D-A417-09	19784535	22669523	55407725	105	5289											
PHLPP1	23239	hgsc.bcm.edu	37	chr18	60612431	60612431	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aacgatcatgaattgcaggcGcatgcacaccgtgattgctc	11	9	10	11	3	1	2	1	2	0	0	2	3	1	2	1	1	4	4	1	1	2	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PHLPP,NS,carcinoma,0,1	PHLPP	NM_194449	exon12	c.G3251A	p.R1084H	GCAGGCGCATGCA	.	47	2	34	0	.	0	A	60612431	G	A	60612431	3	1	34	1	0	0	0	0	1	0	0	0	11902	1087	38	1	3297	1	PHLPP1	18	60612431	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	37942908	60612431	17464817	106	5290											
FUT6	2528	hgsc.bcm.edu	37	chr19	5831808	5831808	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggcgttcctccacagcttCtcggtgatgtagtcggggtg	5	11	15	10	3	1	1	0	1	1	0	5	1	3	1	2	4	1	3	2	4	1	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FUT6,NS,carcinoma,0,1	FUT6	NM_000150	exon3	c.G771T	p.E257D	CAGCTTCTCGGTG	.	58	4	44	0	.	0	A	5831808	C	A	5831808	3	1	34	1	0	0	0	0	1	0	0	0	6143	912	32	3	312	3	FUT6	19	5831808	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09		5831808	53297175	107	5291											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10610426	10610426	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	aggccagcaccaccttgtggGccatgaactgggcggccggt	7	6	15	13	2	0	1	0	1	0	0	0	1	0	1	5	5	2	1	5	5	1	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012289	exon2	c.C284T	p.A95V	TTGTGGGCCATGA	.	20	5	22	0	.	.	A	10610426	G	A	10610426	3	1	34	1	0	0	0	0	1	0	0	0	8184	1203	42	3	1610	3	KEAP1	19	10610426	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	4778618	10610426	48518557	108	5292											
ZNF709	163051	hgsc.bcm.edu;bcgsc.ca	37	chr19	12575678	12575678	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	cagtgtgcattatcatatgtCttcgatagcttggaagagaa	12	13	10	6	1	2	1	1	0	1	1	3	4	2	2	0	1	2	2	0	1	5	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_152601	exon4	c.G1058A	p.R353K	ATATGTCTTCGAT	.	63	4	70	0	.	.	T	12575678	C	T	12575678	3	4	34	1	0	0	0	0	1	0	0	0	18169	913	32	3	871	3	ZNF709	19	12575678	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1965252	12575678	46553305	109	5293											
ZNF682	91120	hgsc.bcm.edu	37	chr19	20117004	20117004	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctagtaaggtgtgagcacCgattaaaggcttttccacat	11	12	10	8	1	1	1	0	1	1	0	2	2	2	1	2	2	1	3	2	2	4	5	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF682,NS,carcinoma,0,1	ZNF682	NM_033196	exon4	c.G1307T	p.R436L	GAGCACCGATTAA	.	54	3	60	0	.	0	A	20117004	C	A	20117004	3	1	34	1	0	0	0	0	1	0	0	0	18145	652	23	2	193	2	ZNF682	19	20117004	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	7541326	20117004	39011979	110	5294											
ZNF254	9534	hgsc.bcm.edu	37	chr19	24289441	24289441	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	catgagatggtggatgaaccCccaggtaggtgagagtgaat	12	8	15	6	0	0	4	0	4	0	2	0	7	0	5	2	4	1	1	2	4	3	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_203282	exon3	c.C249A	p.P83P	TGAACCCCCAGGT	.	90	3	88	0	.	.	A	24289441	C	A	24289441	2	1	34	1	0	0	0	0	0	0	0	1	17856	610	22	3		3	ZNF254	19	24289441	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	4172437	24289441	34839542	111	5295											
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35450228	35450228	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	acgttctgctgcacctgtttCcggggaaggtttgcactgaa	7	12	12	10	2	1	1	0	1	1	0	2	2	2	2	2	3	3	6	2	3	2	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_175872	exon4	c.G531A	p.R177R	CTGTTTCCGGGGA	.	59	11	53	0	.	.	T	35450228	C	T	35450228	2	4	34	1	0	0	0	0	0	0	0	1	18213	842	30	3		3	ZNF792	19	35450228	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	11160787	35450228	23678755	112	5296											
CD22	933	hgsc.bcm.edu	37	chr19	35832642	35832642	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cgtgtgtccatgagcccgggGgaccaagtgatggaggggaa	9	6	18	8	2	0	2	0	2	0	0	1	5	1	5	3	5	1	0	3	5	2	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CD22,NS,carcinoma,0,1	CD22	NM_001185100	exon9	c.G1809T	p.G603G	CCCGGGGGACCAA	.	49	2	48	0	.	0	T	35832642	G	T	35832642	2	4	34	1	0	0	0	0	0	0	0	1	3007	1219	43	3		3	CD22	19	35832642	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	382414	35832642	23296341	113	5297											
FCGBP	8857	bcgsc.ca	37	chr19	40360905	40360905	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cacaatcttggacagggatgCagacaccctgggaaagcagg	13	5	13	10	0	1	1	0	0	1	1	1	4	1	4	1	4	2	2	1	4	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	FCGBP	NM_003890	exon33	c.G15503A	p.C5168Y	GGGATGCAGACAC	.	59	4	71	0	.	416	T	40360905	T	T	40360905	3	4	34	1	0	0	0	0	1	0	0	0	5811	710	25	3	730	3	FCGBP	19	40360905	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	4528263	40360905	18768078	114	5298											
CADM4	199731	hgsc.bcm.edu	37	chr19	44127517	44127517	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ctctttcctcttgtgtccgtCgctgccattgaggaaggctt	4	15	10	12	2	2	1	0	1	2	0	5	2	4	2	3	2	1	2	3	2	1	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CADM4,colon,carcinoma,+2,1	CADM4	NM_145296	exon9	c.G1132A	p.D378N	GTCCGTCGCTGCC	.	45	2	50	0	.	+2	T	44127517	C	T	44127517	3	4	34	1	0	0	0	0	1	0	0	0	2587	884	31	1	38	1	CADM4	19	44127517	Missense_Mutation	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	3766612	44127517	15001466	115	5299											
ZNF234	10780	broad.mit.edu	37	chr19	44661838	44661838	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtcggagtgcacaccttcaaGcccatcaaaaagtccacact	13	7	7	14	1	2	0	2	0	0	0	4	1	3	1	3	1	2	1	3	1	3	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ZNF234	NM_006630	exon6	c.G1669T	p.A557S	CTTCAAGCCCATC	.	44	3	51	0	.	132	T	44661838	G	T	44661838	3	4	34	1	0	0	0	0	1	0	0	0	17845	971	34	3	1683	3	ZNF234	19	44661838	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	534321	44661838	14467145	116	5300											
PPFIA3	8541	hgsc.bcm.edu	37	chr19	49651449	49651449	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggagtcgctggtggacgctcGaatgttagatcaccttaaca	10	10	12	9	3	1	1	1	0	0	1	3	4	1	3	1	3	1	3	1	3	3	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PPFIA3,colon,carcinoma,0,1	PPFIA3	NM_003660	exon24	c.G2945T	p.R982L	ACGCTCGAATGTT	.	48	2	68	0	.	0	T	49651449	G	T	49651449	3	4	34	1	0	0	0	0	1	0	0	0	12356	1058	37	2	3035	2	PPFIA3	19	49651449	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	4989611	49651449	9477534	117	5301											
KLK4	9622	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	51412609	51412609	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	agtgccgcctgccagggctgCgagtgcgggctgcagtcctc	4	7	16	14	3	0	0	0	0	0	0	2	1	1	0	4	2	5	3	4	2	0	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004917	exon2	c.G123A	p.S41S	GGGCTGCGAGTGC	.	37	4	48	0	.	.	T	51412609	C	T	51412609	2	4	34	1	0	0	0	0	0	0	0	1	8449	755	27	1		1	KLK4	19	51412609	Silent	SNP	C	TCGA-ZH-A8Y8-01A-51D-A417-09	1761160	51412609	7716374	118	5302											
PCSK2	5126	hgsc.bcm.edu	37	chr20	17338992	17338992	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtaaagatggctttgcagcaGgaaggatttgaccgaaaaaa	16	8	12	5	1	0	2	0	1	0	1	0	5	0	4	1	3	2	4	1	3	6	3	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,1	.	NM_002594	exon3	c.G303T	p.Q101H	GCAGCAGGAAGGA	.	75	3	58	1	.	112	T	17338992	G	T	17338992	3	4	34	1	0	0	0	0	1	0	0	0	11648	991	35	3	313	3	PCSK2	20	17338992	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		17338992	45686528	119	5303											
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	32298495	32298502	+	Frame_Shift_Del	DEL	ACCGTGCC	ACCGTGCC	-																															acccttgtaggtgaacacaaAccgtgccaggttccaggagt																								novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	ACCGTGCC	ACCGTGCC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_007238	exon3	c.235_242del	p.79_81del	ACACAAACCGTGC	.	55	12	45	0	.	.	-	32298502	ACCGTGCC	-	32298495	7	5	34	1	0	1	0	1	0	0	0	0	12903	43	2	0	405	0	PXMP4	20	32298495	Frame_Shift_Del	DEL	ACCGTGCC	TCGA-ZH-A8Y8-01A-51D-A417-09	14959503	32298495	30727025	120	5304											
TRPC4AP	26133	broad.mit.edu	37	chr20	33632325	33632325	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taccttgattgatttcagctGcagaaggccccaaactcaag	12	10	8	11	0	2	3	2	2	0	1	2	3	2	3	3	1	4	2	3	1	4	4	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TRPC4AP	NM_199368	exon7	c.C848T	p.A283V	TCAGCTGCAGAAG	.	67	4	68	0	.	64	A	33632325	G	A	33632325	3	1	34	1	0	0	0	0	1	0	0	0	16642	1319	46	3	1597	3	TRPC4AP	20	33632325	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	1333830	33632325	29393195	121	5305											
ZFP64	55734	hgsc.bcm.edu	37	chr20	50768700	50768700	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aagcactaatctggaatggaGtcggcgggacagagcaaagc	14	5	14	8	2	1	1	0	0	1	1	2	4	1	4	0	4	3	2	0	4	4	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018197	exon6	c.C2031A	p.D677E	AATGGAGTCGGCG	.	53	4	42	0	.	.	T	50768700	G	T	50768700	3	4	34	1	0	0	0	0	1	0	0	0	17710	1020	36	3	1209	3	ZFP64	20	50768700	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	17136375	50768700	12256820	122	5306											
TCEA2	6919	ucsc.edu	37	chr20	62699440	62699440	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggagcgggggaggggcatGcctctgcccacgtcctcgag	6	5	18	12	3	1	0	0	0	1	0	3	3	2	2	3	5	3	1	3	5	0	0	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TCEA2	NM_003195	exon4	c.G282T	p.M94I	GGGCATGCCTCTG	.	37	4	20	0	.	22	T	62699440	G	T	62699440	3	4	34	1	0	0	0	0	1	0	0	0	15728	1319	46	3	296	3	TCEA2	20	62699440	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	11930740	62699440	326080	123	5307											
POLR2F	5435	hgsc.bcm.edu	37	chr22	38363154	38363154	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gagggggagacagatcctctGctcattgccatgaaggaact	11	8	13	9	0	2	3	1	1	1	2	3	6	3	4	2	3	3	1	2	3	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	POLR2F,NS,carcinoma,0,1	POLR2F	NM_021974	exon4	c.G270T	p.L90L	TCCTCTGCTCATT	.	40	2	49	0	.	0	T	38363154	G	T	38363154	2	4	34	1	0	0	0	0	0	0	0	1	12267	1306	46	3		3	POLR2F	22	38363154	Silent	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		38363154	12941412	124	5308											
POLA1	5422	broad.mit.edu;ucsc.edu	37	chrX	24712122	24712122	+	Splice_Site	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	ctgtgagataggggcgagtgGtgagggacaattccgcgcgc	8	7	18	8	4	0	2	0	2	0	1	1	5	1	3	1	4	0	0	1	4	2	2	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	POLA1	.	.	.	.	CGAGTGGTGAGGG	.	41	4	37	0	.	117	T	24712122	G	T	24712122	5	4	34	1	0	0	0	0	0	0	1	0	12235	1276	44	3		3	POLA1	23	24712122	Splice_Site	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09		24712122	130558438	125	5309											
IL9R	3581	hgsc.bcm.edu	37	chrX	155232673	155232673	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	cttgggagtctctgtcacagGggaaggacaaggtgagggct	9	8	17	7	0	2	1	1	1	1	0	3	4	2	4	0	6	0	1	0	6	2	1	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_176786	exon3	c.G272T	p.G91V	TCACAGGGGAAGG	.	81	4	79	0	.	.	T	155232673	G	T	155232673	3	4	34	1	0	0	0	0	1	0	0	0	7752	1232	43	3	137	3	IL9R	23	155232673	Missense_Mutation	SNP	G	TCGA-ZH-A8Y8-01A-51D-A417-09	130520551	155232673	37887	126	5310											
RNF220	55182	broad.mit.edu	37	chr1	44877854	44877854	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ccccagcactgatggtcctgGcatccacggctgaggccagc	7	6	12	16	1	0	2	0	2	0	0	2	2	2	2	5	4	2	3	5	4	0	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	RNF220	NM_018150	exon2	c.G85A	p.A29T	GTCCTGGCATCCA	.	33	3	25	0	.	56	A	44877854	G	A	44877854	3	1	35	1	0	0	0	0	1	0	0	0	13535	1203	42	3	87	3	RNF220	1	44877854	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		44877854	204372767	1	5311											
SELENBP1	8991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	151339353	151339353	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	atgtccccttcacctcgaacGtctccccatccagcagcaca	9	8	5	19	2	2	0	1	0	1	0	6	1	4	0	6	0	3	2	6	0	1	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001258289	exon6	c.C635T	p.T212M	TCGAACGTCTCCC	.	49	4	45	0	.	.	A	151339353	G	A	151339353	3	1	35	1	0	0	0	0	1	0	0	0	14068	1145	40	1	937	1	SELENBP1	1	151339353	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	106461499	151339353	97911268	2	5312											
TCHH	7062	hgsc.bcm.edu	37	chr1	152085490	152085490	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaattcgttgaaatcgacaCgcccattactgtcaagatcc	12	10	8	11	3	1	2	1	1	0	1	4	4	2	3	2	1	1	1	2	1	4	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TCHH,colon,carcinoma,0,1	TCHH	NM_007113	exon3	c.G203A	p.R68H	TCGACACGCCCAT	.	35	2	44	0	.	0	T	152085490	C	T	152085490	3	4	35	1	0	0	0	0	1	0	0	0	15760	536	19	1	5632	1	TCHH	1	152085490	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	746137	152085490	97165131	3	5313											
PKLR	5313	hgsc.bcm.edu;bcgsc.ca	37	chr1	155271160	155271160	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acccatgaccgaagctgcagGgatgatatgttctcctggat	10	10	11	10	1	1	2	0	2	1	0	2	5	1	4	3	2	2	3	3	2	2	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000298	exon1	c.C27A	p.S9S	CTGCAGGGATGAT	.	47	4	29	0	.	.	T	155271160	G	T	155271160	2	4	35	1	0	0	0	0	0	0	0	1	12024	1219	43	3		3	PKLR	1	155271160	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	3185670	155271160	93979461	4	5314											
PRG4	10216	hgsc.bcm.edu	37	chr1	186276262	186276262	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggagcctgcacccaccAccaaggagcctgcacccacc	11	2	8	20	0	0	0	0	0	0	0	0	2	0	2	8	2	4	2	8	2	2	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.,1	.	NM_005807	exon7	c.A1411C	p.T471P	CCCACCACCAAGG	.	97	5	86	2	.	259	C	186276262	A	C	186276262	3	2	35	1	0	0	0	0	1	0	0	0	12533	159	6	4	1433	4	PRG4	1	186276262	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	31005102	186276262	62974359	5	5315											
TATDN3	128387	hgsc.bcm.edu	37	chr1	212988490	212988490	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ctaagctccgacacttgctcCagaaatagcttcaaaaccat	14	9	5	13	1	1	1	1	0	0	1	3	2	3	1	3	0	4	3	3	0	5	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TATDN3,NS,malignant_melanoma,0,1	TATDN3	NM_001146171	exon10	c.C838A	p.Q280K	TTGCTCCAGAAAT	.	46	2	32	0	.	0	A	212988490	C	A	212988490	3	1	35	1	0	0	0	0	1	0	0	0	15650	595	21	3	876	3	TATDN3	1	212988490	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	26712228	212988490	36262131	6	5316											
RYR2	6262	hgsc.bcm.edu	37	chr1	237732451	237732451	+	Silent	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctctgtataggcccagCggtggcatcagggcaatgaa	9	9	13	10	1	2	1	1	1	1	0	3	1	3	1	2	4	1	3	2	4	4	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RYR2,NS,carcinoma,0,1	RYR2	NM_001035	exon29	c.C3430A	p.R1144R	GCCCAGCGGTGGC	.	59	3	49	0	.	0	A	237732451	C	A	237732451	2	1	35	1	0	0	0	0	0	0	0	1	13821	759	27	2		2	RYR2	1	237732451	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	24743961	237732451	11518170	7	5317											
OR2L2	26246	broad.mit.edu	37	chr1	248202088	248202088	+	Silent	SNP	C	C	T	0	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	tattgcaagtccagagccatCaatcattttttctgtgatgt	10	16	7	8	0	3	2	2	1	1	1	4	2	4	2	2	0	2	1	2	0	3	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	OR2L2	NM_001004686	exon1	c.C519T	p.I173I	AGCCATCAATCAT	.	78	5	57	0	.	115	T	248202088	C	T	248202088	2	4	35	1	0	0	0	0	0	0	0	1	11055	816	29	3		3	OR2L2	1	248202088	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	10469637	248202088	1048533	8	5318											
OR2T33	391195	hgsc.bcm.edu	37	chr1	248436680	248436680	+	Missense_Mutation	SNP	C	C	G																															cagctgcacccaggagccaaCacgacatggtcatcctcagg																								novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR2T33,NS,carcinoma,0,1	OR2T33	NM_001004695	exon1	c.G437C	p.C146S	AGCCAACACGACA	.	73	4	76	0	.	0	G	248436680	C	G	248436680	3	3	35	1	0	0	0	0	1	0	0	0	11072	478	17	5	528	5	OR2T33	1	248436680	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	234592	248436680	813941	9	5319	46	2									
OR2T33	391195	hgsc.bcm.edu	37	chr1	248436682	248436682	+	Silent	SNP	C	C	T																															gctgcacccaggagccaacaCgacatggtcatcctcaggca																								novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR2T33,NS,carcinoma,0,2	OR2T33	NM_001004695	exon1	c.G435A	p.S145S	CCAACACGACATG	.	74	4	77	1	.	0	T	248436682	C	T	248436682	2	4	35	1	0	0	0	0	0	0	0	1	11072	523	19	1		1	OR2T33	1	248436682	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	2	248436682	813939	10	5320	46	2									
ALLC	55821	bcgsc.ca	37	chr2	3730548	3730548	+	Missense_Mutation	SNP	G	T	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ctagctaaaatccgacgactGgagttacttggttcccatga	11	11	9	10	2	0	1	0	1	0	0	2	4	2	2	2	2	2	3	2	2	4	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ALLC,NS,carcinoma,+1,2	ALLC	NM_018436	exon7	c.G395T	p.W132L	ACGACTGGAGTTA	.	66	4	62	0	.	61	T	3730548	T	T	3730548	3	4	35	1	0	0	0	0	1	0	0	0	530	1357	47	3	417	3	ALLC	2	3730548	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		3730548	239468825	11	5321											
C2orf16	84226	bcgsc.ca	37	chr2	27804408	27804408	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	cagagagaagccatcgcagtCcctcagagagaagccatcgc	13	4	11	13	2	1	4	1	0	0	4	4	6	2	4	3	0	2	1	3	0	2	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	C2orf16	NM_032266	exon1	c.C4969T	p.P1657S	CGCAGTCCCTCAG	.	60	5	40	0	.	357	T	27804408	T	T	27804408	3	4	35	1	0	0	0	0	1	0	0	0	2171	855	30	3	4971	3	C2orf16	2	27804408	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	24073860	27804408	215394965	12	5322											
FAM179A	165186	broad.mit.edu;bcgsc.ca	37	chr2	29274737	29274737	+	Silent	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccctgcctggacccagCgggaacatccgcggggtggt	6	5	16	14	3	0	0	0	0	0	0	1	2	1	2	4	6	3	1	4	6	1	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FAM179A	NM_199280	exon20	c.C2838T	p.S946S	ACCCAGCGGGAAC	.	92	8	76	0	.	106	T	29274737	C	T	29274737	2	4	35	1	0	0	0	0	0	0	0	1	5535	767	27	1		1	FAM179A	2	29274737	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	1470329	29274737	213924636	13	5323											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73682297	73682297	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctttctctccagcctggaatAtgaagttcaatttagcacat	11	14	6	10	0	2	1	1	1	1	0	4	2	3	2	2	1	2	2	2	1	5	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015120	exon9	c.A7546C	p.M2516L	TGGAATATGAAGT	.	71	9	56	0	.	.	C	73682297	A	C	73682297	3	2	35	1	0	0	0	0	1	0	0	0	531	449	16	4	7580	4	ALMS1	2	73682297	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	44407560	73682297	169517076	14	5324											
RANBP2	5903	hgsc.bcm.edu	37	chr2	109379749	109379749	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	cagcatatttatgcctatccGcaacagatgcacacaccgcc	12	8	6	15	2	0	1	0	0	0	1	1	1	1	1	4	0	4	3	4	0	4	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RANBP2_ENST00000283195,rectum,carcinoma,0,2	RANBP2_ENST00000283195	NM_006267	exon20	c.G2754A	p.P918P	CTATCCGCAACAG	.	15	2	13	0	.	0	A	109379749	G	A	109379749	2	1	35	1	0	0	0	0	0	0	0	1	13080	1074	38	1		1	RANBP2	2	109379749	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	35697452	109379749	133819624	15	5325											
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120620118	120620118	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	ttttttttttacagaaacatGatcaggggcaagtcttgttg	10	17	9	5	0	2	2	1	1	1	1	2	2	2	2	0	2	2	2	0	2	3	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_002830	exon3	c.G145C	p.D49H	AAACATGATCAGG	.	70	9	56	0	.	.	C	120620118	G	C	120620118	3	2	35	1	0	0	0	0	1	0	0	0	12842	1290	45	5	151	5	PTPN4	2	120620118	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	11240369	120620118	122579255	16	5326											
EPB41L5	57669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120861693	120861693	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	aaccagtggaacacaagggcCttgcccccaccccagaccgc	11	3	9	18	1	0	1	0	0	0	1	0	2	0	2	7	2	3	0	7	2	3	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001184939	exon17	c.C1395T	p.A465A	AAGGGCCTTGCCC	.	49	8	52	0	.	.	T	120861693	C	T	120861693	2	4	35	1	0	0	0	0	0	0	0	1	5185	668	24	3		3	EPB41L5	2	120861693	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	241575	120861693	122337680	17	5327											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128861520	128861520	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtgagtttttagcagAagacagtcaagagaaatttt	14	12	9	6	0	1	4	1	1	0	3	2	5	2	4	1	0	1	2	1	0	4	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_020120	exon3	c.A209C	p.E70A	TAGCAGAAGACAG	.	229	29	138	0	.	.	C	128861520	A	C	128861520	3	2	35	1	0	0	0	0	1	0	0	0	17001	246	9	4	219	4	UGGT1	2	128861520	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	7999827	128861520	114337853	18	5328											
LY75	4065	hgsc.bcm.edu	37	chr2	160731975	160731975	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	cttataacaagaaagacttgCggggaaactctgccagcctt	13	9	9	10	1	1	2	0	0	1	2	1	3	1	3	2	2	5	0	2	2	5	4	rs371478963	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	LY75,NS,carcinoma,0,1	LY75	NM_002349	exon12	c.G1954T	p.A652S	GACTTGCGGGGAA	.	45	2	47	0	.	0	A	160731975	C	A	160731975	3	1	35	1	0	0	0	0	1	0	0	0	9145	768	27	2	3310	2	LY75	2	160731975	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	31870455	160731975	82467398	19	5329											
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	165476280	165476280	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	acagcatagctcaggaaaagGgtttggaatagatggcattt	14	10	12	5	0	1	1	1	0	0	1	1	3	1	3	0	4	2	4	0	4	5	4	rs139841108	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004490	exon2	c.C241A	p.P81T	GAAAAGGGTTTGG	.	70	17	81	0	.	.	T	165476280	G	T	165476280	3	4	35	1	0	0	0	0	1	0	0	0	6798	1232	43	3	1433	3	GRB14	2	165476280	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	4744305	165476280	77723093	20	5330											
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	chr2	179454980	179454980	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	ctagaatgcggatagtttggCctactctcacggtaataaca	12	11	9	9	2	1	1	1	0	1	1	2	2	1	2	1	3	3	2	1	3	6	6	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001267550	exon304	c.G61472A	p.G20491D	GTTTGGCCTACTC	.	87	4	58	0	.	.	T	179454980	C	T	179454980	3	4	35	1	0	0	0	0	1	0	0	0	16797	739	26	3	46743	3	TTN	2	179454980	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	13978700	179454980	63744393	21	5331											
FSIP2	401024	broad.mit.edu;bcgsc.ca	37	chr2	186661056	186661056	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ttaatttcaaggaaaacataCagaatatccttctacgggtt	15	13	6	7	1	2	1	1	0	1	1	3	2	3	2	1	2	3	1	1	2	8	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FSIP2	NM_173651	exon16	c.C9460A	p.Q3154K	AACATACAGAATA	.	77	9	62	0	.	251	A	186661056	C	A	186661056	3	1	35	1	0	0	0	0	1	0	0	0	6110	479	17	3	9522	3	FSIP2	2	186661056	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	7206076	186661056	56538317	22	5332											
STK36	27148	hgsc.bcm.edu;bcgsc.ca	37	chr2	219561301	219561301	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tctatgatggcctccttatcCttctgttgcagctcctcact	5	16	6	14	0	3	1	1	1	2	0	6	1	6	1	4	1	2	3	4	1	2	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015690	exon22	c.C2563T	p.L855F	CTTATCCTTCTGT	.	82	4	62	0	.	.	T	219561301	C	T	219561301	3	4	35	1	0	0	0	0	1	0	0	0	15358	681	24	3	2645	3	STK36	2	219561301	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	32900245	219561301	23638072	23	5333											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	220329177	220329177	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaaccgccagcccgtgCgcccagaccagcggcgcttt	8	5	12	16	5	0	2	0	1	0	2	0	3	0	2	5	1	4	1	5	1	1	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SPEG,NS,carcinoma,-1,1	SPEG	NM_005876	exon9	c.C2728T	p.R910C	CCCGTGCGCCCAG	.	30	4	22	0	.	-1	T	220329177	C	T	220329177	3	4	35	1	0	0	0	0	1	0	0	0	15092	768	27	1	2762	1	SPEG	2	220329177	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	767876	220329177	22870196	24	5334											
IRS1	3667	broad.mit.edu	37	chr2	227660543	227660543	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gcctgcaaatgctagcagccCcgggaggtgcagggcccagt	8	5	15	13	1	0	0	0	0	0	0	0	1	0	1	4	3	5	4	4	3	2	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	IRS1	NM_005544	exon1	c.G2912A	p.G971E	GCAGCCCCGGGAG	.	23	3	18	0	.	141	T	227660543	C	T	227660543	3	4	35	1	0	0	0	0	1	0	0	0	7884	623	22	3	820	3	IRS1	2	227660543	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	7331366	227660543	15538830	25	5335											
SLC19A3	80704	hgsc.bcm.edu	37	chr2	228564115	228564115	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaagaactctacaacctgcaTggtcttcactccttggccaa	11	10	7	13	0	3	1	1	0	2	1	4	2	4	1	3	2	4	1	3	2	5	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SLC19A3,NS,carcinoma,0,1	SLC19A3	NM_025243	exon3	c.A316G	p.M106V	CCTGCATGGTCTT	.	60	2	45	0	.	0	C	228564115	T	C	228564115	3	2	35	1	0	0	0	0	1	0	0	0	14485	1464	51	4	1190	4	SLC19A3	2	228564115	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	903572	228564115	14635258	26	5336											
SPHKAP	80309	hgsc.bcm.edu	37	chr2	228996763	228996763	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	cacagcctctgccctgctgcGgttccaaaacgtcatacatc	9	9	7	16	2	2	0	1	0	1	0	4	0	3	0	3	1	6	2	3	1	3	2	rs141195352	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SPHKAP_ENST00000392056,NS,carcinoma,+1,2	SPHKAP_ENST00000392056	NM_030623	exon2	c.C71A	p.P24Q	TGCTGCGGTTCCA	.	52	3	59	0	.	+1	T	228996763	G	T	228996763	3	4	35	1	0	0	0	0	1	0	0	0	15104	1116	39	2	5075	2	SPHKAP	2	228996763	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	432648	228996763	14202610	27	5337											
IQSEC1	9922	hgsc.bcm.edu	37	chr3	12942851	12942851	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	accggtgggtgggggggtggCcagggctggggctgagggca	4	5	25	7	1	0	1	0	1	0	0	0	1	0	1	2	10	0	3	2	10	0	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.,1	.	NM_001134382	exon15	c.2976+1G>C	.	GGGTGGCCAGGGC	.	13	5	9	1	.	88	G	12942851	C	G	12942851	5	3	35	1	0	0	0	0	0	0	1	0	7861	739	26	5	421	5	IQSEC1	3	12942851	Splice_Site	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09		12942851	185079579	28	5338											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108361320	108361320	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	atctctgaaaataactgataCtgatataagaccgaagatca	18	10	6	7	1	2	5	1	3	1	2	3	6	2	5	1	0	2	0	1	0	7	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014648	exon13	c.C1100G	p.T367S	CTGATACTGATAT	.	117	6	73	0	.	.	G	108361320	C	G	108361320	3	3	35	1	0	0	0	0	1	0	0	0	4891	565	20	5	1146	5	DZIP3	3	108361320	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	95418469	108361320	89661110	29	5339											
FGFRL1	53834	hgsc.bcm.edu;broad.mit.edu	37	chr4	1018129	1018129	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	ttccaagcccgtgctcacagGcacgcaccccgtgaacacga	10	5	9	17	4	1	1	1	1	0	0	2	2	2	1	4	1	3	3	4	1	2	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001004356	exon6	c.G749A	p.G250D	TCACAGGCACGCA	.	43	4	38	0	.	.	A	1018129	G	A	1018129	3	1	35	1	0	0	0	0	1	0	0	0	5902	1203	42	3	767	3	FGFRL1	4	1018129	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		1018129	190136147	30	5340											
FAM193A	8603	hgsc.bcm.edu	37	chr4	2698298	2698298	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagcacgcgtgcagcgaagcGagcaaggcataagcaaagga	15	2	14	10	4	0	0	0	0	0	0	0	3	0	1	0	2	6	5	0	2	4	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FAM193A,NS,carcinoma,0,1	FAM193A	NM_001256667	exon17	c.G2678T	p.R893L	CGAAGCGAGCAAG	.	41	2	42	0	.	0	T	2698298	G	T	2698298	3	4	35	1	0	0	0	0	1	0	0	0	5556	1058	37	2	2666	2	FAM193A	4	2698298	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	1680169	2698298	188455978	31	5341											
WDR19	57728	bcgsc.ca	37	chr4	39226502	39226502	+	Splice_Site	SNP	A	T	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ctggatttttttttttttttAgactggtgtcgttcagtatt	5	24	8	4	1	1	1	1	0	0	1	2	2	1	2	0	2	0	2	0	2	2	11	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	WDR19	NM_025132	exon15	c.1480-2A>T	.	TTTTTTAGACTGG	.	71	11	49	3	.	96	T	39226502	T	T	39226502	5	4	35	1	0	0	0	0	0	0	1	0	17339	434	15	5	1536	5	WDR19	4	39226502	Splice_Site	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	36528204	39226502	151927774	32	5342											
CORIN	10699	hgsc.bcm.edu	37	chr4	47625641	47625641	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggcaatgaggacacaGccacagatatgtccactggg	11	9	11	10	0	1	2	0	1	1	1	2	3	2	3	2	3	1	1	2	3	2	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	CORIN,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CORIN	NM_006587	exon19	c.C2487A	p.G829G	GACACAGCCACAG	.	65	3	34	0	.	0	T	47625641	G	T	47625641	2	4	35	1	0	0	0	0	0	0	0	1	3775	958	34	3		3	CORIN	4	47625641	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	8399139	47625641	143528635	33	5343											
ABCG2	9429	hgsc.bcm.edu	37	chr4	89060947	89060947	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acaagttcatgtacatacttGatattcgataatatttcttt	13	18	4	6	1	2	1	1	1	1	0	3	2	2	1	0	0	2	2	0	0	6	10	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004827	exon2	c.C201A	p.I67I	ATACTTGATATTC	.	89	4	70	0	.	.	T	89060947	G	T	89060947	2	4	35	1	0	0	0	0	0	0	0	1	69	1280	45	3		3	ABCG2	4	89060947	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	41435306	89060947	102093329	34	5344											
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	122775917	122775917	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	actggtttggatgtagtaatCtgtataagcgcaagttttcc	10	15	10	6	1	1	0	0	0	1	0	2	1	2	1	1	2	1	6	1	2	5	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018190	exon7	c.G660C	p.Q220H	AGTAATCTGTATA	.	77	8	63	0	.	.	G	122775917	C	G	122775917	3	3	35	1	0	0	0	0	1	0	0	0	1339	912	32	5	1544	5	BBS7	4	122775917	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	33714970	122775917	68378359	35	5345											
KIAA1109	84162	hgsc.bcm.edu;bcgsc.ca	37	chr4	123245634	123245634	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttacaaaccaagttacagccGatcaaaaagcatttctgctt	15	11	5	10	1	2	0	1	0	1	0	2	1	2	0	2	0	6	3	2	0	6	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015312	exon62	c.G10847T	p.R3616L	ACAGCCGATCAAA	.	87	4	90	0	.	.	T	123245634	G	T	123245634	3	4	35	1	0	0	0	0	1	0	0	0	8250	1058	37	2	11093	2	KIAA1109	4	123245634	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	469717	123245634	67908642	36	5346											
FRG1	2483	hgsc.bcm.edu	37	chr4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	ggagagccaaattgaaagccGacagatactgcaagtgactg	15	6	12	8	1	0	4	0	2	0	2	0	6	0	4	2	1	4	1	2	1	4	2	rs373037319		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	67	6	49	2	.	0	A	190884267	G	A	190884267	3	1	35	1	0	0	0	0	1	0	0	0	6081	1058	37	1	794	1	FRG1	4	190884267	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	67638633	190884267	270009	37	5347											
SLC9A3	6550	broad.mit.edu	37	chr5	476666	476666	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcagtgcccacctcctgccGcggcttgtacaggtactgct	5	9	11	16	3	0	0	0	0	0	0	1	0	1	0	4	2	5	5	4	2	2	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLC9A3	NM_004174	exon12	c.C1882T	p.R628W	CCTGCCGCGGCTT	.	19	3	13	0	.	89	A	476666	G	A	476666	3	1	35	1	0	0	0	0	1	0	0	0	14768	1086	38	1	646	1	SLC9A3	5	476666	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		476666	180438594	38	5348											
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	21842369	21842369	+	Missense_Mutation	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcctcccatatccttggCttggatgagtacttgatatt	7	16	8	10	0	0	2	0	2	0	0	3	3	3	3	3	2	1	2	3	2	3	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004061	exon8	c.G715T	p.A239S	CCTTGGCTTGGAT	.	89	8	75	0	.	.	A	21842369	C	A	21842369	3	1	35	1	0	0	0	0	1	0	0	0	3120	797	28	3	1701	3	CDH12	5	21842369	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	21365703	21842369	159072891	39	5349											
SLC12A2	6558	hgsc.bcm.edu	37	chr5	127522246	127522246	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctctctacatggcatggttaGaagctctatctaaggaccta	11	12	8	10	0	3	1	0	0	3	1	4	2	3	2	1	3	2	3	1	3	6	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001046	exon27	c.G3562T	p.E1188X	TGGTTAGAAGCTC	.	80	4	62	0	.	.	T	127522246	G	T	127522246	4	4	35	1	0	0	0	0	0	1	0	0	14438	943	33	3	3668	3	SLC12A2	5	127522246	Nonsense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	105679877	127522246	53393014	40	5350											
PCDHB16	57717	hgsc.bcm.edu	37	chr5	140563836	140563836	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtacccgctgcagaacGgctccgcgccctgcactgag	6	7	12	16	4	0	2	0	1	0	1	1	2	1	2	3	1	5	6	3	1	2	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	PCDHB16,NS,carcinoma,0,1	PCDHB16	NM_020957	exon1	c.G1702A	p.G568S	CAGAACGGCTCCG	.	69	3	61	1	.	0	A	140563836	G	A	140563836	3	1	35	1	0	0	0	0	1	0	0	0	11588	1116	39	1	1704	1	PCDHB16	5	140563836	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	13041590	140563836	40351424	41	5351											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140735956	140735956	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgccattcacacttgaaaagAcctatggaaattattatcgg	14	12	7	8	1	1	2	1	1	0	1	2	3	1	3	2	2	1	0	2	2	6	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018917	exon1	c.A1189G	p.T397A	GAAAAGACCTATG	.	43	9	38	0	.	.	G	140735956	A	G	140735956	3	3	35	1	0	0	0	0	1	0	0	0	11603	275	10	4	1191	4	PCDHGA4	5	140735956	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	172120	140735956	40179304	42	5352											
TUBB	203068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30691487	30691487	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	atctgcttccgcactctgaaGctgaccacaccaacctacgg	10	8	7	16	2	2	2	0	2	2	0	3	2	3	2	4	1	4	3	4	1	3	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_178014	exon4	c.G648A	p.K216K	TCTGAAGCTGACC	.	52	5	40	0	.	.	A	30691487	G	A	30691487	2	1	35	1	0	0	0	0	0	0	0	1	16814	962	34	3		3	TUBB	6	30691487	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		30691487	140423580	43	5353											
MUC21	394263	hgsc.bcm.edu	37	chr6	30954701	30954701	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagtccagcacaccctccaGtggggccggcacagccacca	9	4	11	17	1	0	1	0	1	0	0	2	1	2	1	6	3	2	2	6	3	0	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001010909	exon2	c.G749A	p.S250N	CCTCCAGTGGGGC	.	72	4	71	0	.	.	A	30954701	G	A	30954701	3	1	35	1	0	0	0	0	1	0	0	0	10025	1029	36	3	755	3	MUC21	6	30954701	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	263214	30954701	140160366	44	5354											
DAXX	1616	hgsc.bcm.edu	37	chr6	33288173	33288173	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	acacctcaccagaatccaagGaggcttcgggggtgtctgca	10	7	12	12	1	2	1	1	0	1	1	4	2	3	2	3	4	1	2	3	4	2	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	DAXX,NS,carcinoma,0,1	DAXX	NM_001141970	exon4	c.C1271A	p.S424Y	TCCAAGGAGGCTT	.	47	2	31	0	.	0	T	33288173	G	T	33288173	3	4	35	1	0	0	0	0	1	0	0	0	4267	1174	41	3	1007	3	DAXX	6	33288173	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	2333472	33288173	137826894	45	5355											
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu	37	chr6	102074369	102074369	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	agttccccacatacagacccGctggaagcaccaggtgtcag	11	6	10	14	1	1	1	1	0	0	1	2	2	2	2	4	2	2	3	4	2	2	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_021956	exon3	c.G398A	p.R133H	AGACCCGCTGGAA	.	44	4	16	0	.	.	A	102074369	G	A	102074369	3	1	35	1	0	0	0	0	1	0	0	0	6815	1087	38	1	408	1	GRIK2	6	102074369	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	68786196	102074369	69040698	46	5356											
SEC63	11231	broad.mit.edu	37	chr6	108214765	108214765	+	Nonsense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	caggtgtaggttttttttttAaaggtttctttttttttgat	6	25	8	2	0	1	1	0	1	1	0	1	1	1	1	0	3	0	3	0	3	3	11	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SEC63,NS,carcinoma,0,1	SEC63	NM_007214	exon16	c.T1595A	p.L532X	TTTTTTAAAGGTT	.	110	5	94	1	.	79	T	108214765	A	T	108214765	4	4	35	1	0	0	0	0	0	1	0	0	14059	372	13	5	711	5	SEC63	6	108214765	Nonsense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	6140396	108214765	62900302	47	5357											
MIOS	54468	hgsc.bcm.edu	37	chr7	7625410	7625410	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgcatttctgacaagtGaaacaggatcttacgatgga	12	13	10	6	1	2	2	0	2	2	0	2	5	2	4	0	2	3	2	0	2	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_019005	exon7	c.G1792T	p.E598X	ACAAGTGAAACAG	.	77	4	60	0	.	.	T	7625410	G	T	7625410	4	4	35	1	0	0	0	0	0	1	0	0	9637	1291	45	3	1806	3	MIOS	7	7625410	Nonsense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		7625410	151513253	48	5358											
EGFR	1956	broad.mit.edu	37	chr7	55249090	55249090	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acgcagctcatgcccttcggCtgcctcctggactatgtccg	5	10	10	16	3	1	0	1	0	0	0	4	1	3	1	4	2	3	3	4	2	1	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	EGFR,colon,carcinoma,+2,8	EGFR	NM_005228	exon20	c.C2388T	p.G796G	CTTCGGCTGCCTC	.	30	3	24	0	.	20426	T	55249090	C	T	55249090	2	4	35	1	0	0	0	0	0	0	0	1	4993	784	28	3		3	EGFR	7	55249090	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	47623680	55249090	103889573	49	5359											
GPR85	0	broad.mit.edu	37	chr7	112723989	112723989	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctgcctgtggtgtttGcattttgcctgatgcccagc	3	17	10	11	0	2	1	0	1	2	0	2	1	2	1	3	1	5	2	3	1	0	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	GPR85	NM_001146265	exon3	c.C788G	p.A263G	GTGTTTGCATTTT	.	42	3	27	0	.	49	C	112723989	G	C	112723989	3	2	35	1	0	0	0	0	1	0	0	0	6755	1319	46	5	328	5	GPR85	7	112723989	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	57474899	112723989	46414674	50	5360											
LMOD2	442721	hgsc.bcm.edu	37	chr7	123303794	123303794	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	tggaagttccagaagccctgCgataaaaacatgatctttag	14	10	9	8	1	1	2	0	1	1	1	2	4	2	3	2	1	3	1	2	1	6	4	rs375457267		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_207163	exon3	c.C1639T	p.R547X	GCCCTGCGATAAA	.	90	4	36	0	.	.	T	123303794	C	T	123303794	4	4	35	1	0	0	0	0	0	1	0	0	8898	760	27	1	1649	1	LMOD2	7	123303794	Nonsense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	10579805	123303794	35834869	51	5361											
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	acccactccatcgagatttcActgtagctagaccaaaatca	14	9	5	13	1	2	2	2	0	0	2	4	3	3	2	3	0	1	2	3	0	4	3	rs121913227	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	BRAF,NS,adenoma,0,19815	BRAF	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	102	17	90	0	.	0	T	140453136	A	T	140453136	3	4	35	1	0	0	0	0	1	0	0	0	1498	159	6	5	517	5	BRAF	7	140453136	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	17149342	140453136	18685527	52	5362											
MTUS1	57509	hgsc.bcm.edu	37	chr8	17513428	17513428	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatgtaagtgtcccgaaGcttttcatactccctggtgt	8	15	8	10	1	2	0	2	0	0	0	4	1	4	0	2	1	2	2	2	1	4	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001001924	exon9	c.C3052A	p.L1018I	CCCGAAGCTTTTC	.	86	4	63	0	.	.	T	17513428	G	T	17513428	3	4	35	1	0	0	0	0	1	0	0	0	10013	971	34	3	788	3	MTUS1	8	17513428	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		17513428	128850594	53	5363											
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	75737721	75737721	+	Silent	SNP	C	C	A	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tatcataatcaagttcggggCaaagtgttcccaccggcagc	11	9	10	11	2	2	0	2	0	0	0	4	0	3	0	2	3	1	4	2	3	4	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015886	exon2	c.C237A	p.G79G	TCGGGGCAAAGTG	.	81	9	56	0	.	.	A	75737721	C	A	75737721	2	1	35	1	0	0	0	0	0	0	0	1	11916	697	25	3		3	PI15	8	75737721	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	58224293	75737721	70626301	54	5364											
ATAD2	29028	broad.mit.edu	37	chr8	124340548	124340548	+	Silent	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttcctagagtcttcaagctcAttctctatattacaagtatt	11	17	4	9	0	4	1	2	0	2	1	6	1	5	1	1	0	2	2	1	0	7	9	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ATAD2	NM_014109	exon25	c.T3750C	p.N1250N	AAGCTCATTCTCT	.	50	3	47	0	.	160	G	124340548	A	G	124340548	2	3	35	1	0	0	0	0	0	0	0	1	1070	214	8	4		4	ATAD2	8	124340548	Silent	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	48602827	124340548	22023474	55	5365											
ZFAT	57623	hgsc.bcm.edu	37	chr8	135614580	135614580	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	cgaacttcttgcggcagacgGcacagacgtacacgaagggg	11	5	14	11	5	1	2	0	0	1	2	1	4	1	2	0	4	3	3	0	4	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZFAT_ENST00000377838,NS,carcinoma,0,2	ZFAT_ENST00000377838	NM_020863	exon6	c.C1382T	p.A461V	CAGACGGCACAGA	.	40	2	26	0	.	0	A	135614580	G	A	135614580	3	1	35	1	0	0	0	0	1	0	0	0	17690	1203	42	3	2393	3	ZFAT	8	135614580	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	11274032	135614580	10749442	56	5366											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	6007401	6007401	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	ccctgtccgggctgctgcggGaaggcgcgaccgccccggcc	3	4	16	18	6	0	0	0	0	0	0	1	2	1	1	6	4	2	2	6	4	1	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001017969	exon1	c.C387T	p.F129F	CTGCGGGAAGGCG	.	37	9	26	0	.	.	A	6007401	G	A	6007401	2	1	35	1	0	0	0	0	0	0	0	1	8312	1165	41	3		3	KIAA2026	9	6007401	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		6007401	135206030	57	5367											
UBAP2	55833	hgsc.bcm.edu	37	chr9	33989030	33989030	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgtttccacgtccacgactcGattctttctcgcttttcttc	4	18	5	14	4	3	0	0	0	3	0	8	2	5	0	2	0	0	2	2	0	0	6	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	UBAP2,NS,malignant_melanoma,0,1	UBAP2	NM_018449	exon5	c.C383A	p.S128X	CGACTCGATTCTT	.	49	3	48	0	.	0	T	33989030	G	T	33989030	4	4	35	1	0	0	0	0	0	1	0	0	16898	1059	37	2	3076	2	UBAP2	9	33989030	Nonsense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	27981629	33989030	107224401	58	5368											
FAM108B1	51104	broad.mit.edu	37	chr9	74489678	74489678	+	Missense_Mutation	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tcctatgtaaaagctgctcaTttgaccaagatcaacagcat	14	11	6	10	0	2	2	2	1	0	1	3	2	3	2	2	0	4	4	2	0	5	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FAM108B1	NM_016014	exon2	c.A319G	p.M107V	TGCTCATTTGACC	.	42	3	33	0	.	24	C	74489678	T	C	74489678	3	2	35	1	0	0	0	0	1	0	0	0	5423	1493	52	4	590	4	FAM108B1	9	74489678	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	40500648	74489678	66723753	59	5369											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	125752410	125752411	+	Missense_Mutation	DNP	GC	GC	CT																															ccccactttcagccactgctGcaccccagactcctgacagt																								novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_012197	exon6	c.C842T	p.A281L	CTGCTGCACCCCA	.	67	5	61	0	.	.	CT	125752411	GC	CT	125752410	3	2	35	1	0	0	0	0	1	0	0	0	13016	1319	46	5	859	5	RABGAP1	9	125752410	Missense_Mutation	DNP	GC	TCGA-ZU-A8S4-01A-11D-A417-09	51262732	125752410	15461021	60	5370											
GARNL3	84253	hgsc.bcm.edu	37	chr9	130152985	130152985	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatcaaaaccccggaagCggttagaagaaagccaagga	18	3	10	10	2	1	2	1	0	0	2	1	4	1	4	4	3	3	1	4	3	8	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	GARNL3,NS,carcinoma,0,1	GARNL3	NM_032293	exon27	c.C2809T	p.R937W	CGGAAGCGGTTAG	.	40	2	35	0	.	0	T	130152985	C	T	130152985	3	4	35	1	0	0	0	0	1	0	0	0	6281	759	27	1	2915	1	GARNL3	9	130152985	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	4400575	130152985	11060446	61	5371											
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	62648582	62648582	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	agaggtagcgaggtaaattcGatgtgcaaagatgtgttcct	12	11	13	5	2	0	2	0	0	0	2	2	4	1	2	1	2	2	4	1	2	4	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014836	exon6	c.C844G	p.R282G	AAATTCGATGTGC	.	58	6	32	0	.	.	C	62648582	G	C	62648582	3	2	35	1	0	0	0	0	1	0	0	0	13383	1066	37	5	1270	5	RHOBTB1	10	62648582	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		62648582	72886165	62	5372											
GRID1	2894	hgsc.bcm.edu	37	chr10	87407113	87407113	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	cagcagaatcccggacagtgCcataagacatttccacttgt	12	9	8	12	1	0	2	0	0	0	2	2	3	2	3	3	1	2	1	3	1	2	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	GRID1,colon,carcinoma,0,1	GRID1	NM_017551	exon13	c.G2039A	p.G680D	ACAGTGCCATAAG	.	42	3	46	0	.	0	T	87407113	C	T	87407113	3	4	35	1	0	0	0	0	1	0	0	0	6812	739	26	3	1006	3	GRID1	10	87407113	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	24758531	87407113	48127634	63	5373											
MUC2	4583	broad.mit.edu	37	chr11	1093232	1093232	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	catcaccaccaccactacggTgaccccaaccccaacaccca	13	3	3	22	1	1	1	1	1	0	0	1	1	1	1	8	1	3	0	8	1	3	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	MUC2	NM_002457	exon30	c.T5051G	p.V1684G	CTACGGTGACCCC	.	237	5	164	2	.	614	G	1093232	T	G	1093232	3	3	35	1	0	0	0	0	1	0	0	0	10023	1696	59	4	5169	4	MUC2	11	1093232	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09		1093232	133913284	64	5374											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttcgccgcctgccgcTcccaggtggggctctggtct	2	9	12	18	3	2	0	0	0	2	0	4	0	3	0	6	4	1	2	6	4	0	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	32	4	16	1	.	0	G	1258389	T	G	1258389	3	3	35	1	0	0	0	0	1	0	0	0	10027	1551	54	4	3399	4	MUC5B	11	1258389	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	165157	1258389	133748127	65	5375											
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47236765	47236765	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aggaacaagaggagcaggagTcccctggagctggagcccga	12	3	16	10	1	0	1	0	0	0	1	1	7	1	6	3	5	4	2	3	5	2	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000107	exon1	c.T78G	p.S26R	CAGGAGTCCCCTG	.	64	8	34	0	.	.	G	47236765	T	G	47236765	3	3	35	1	0	0	0	0	1	0	0	0	4347	1664	58	4	80	4	DDB2	11	47236765	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	45978376	47236765	87769751	66	5376											
OR5I1	10798	hgsc.bcm.edu	37	chr11	55703506	55703506	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	ggttacagatggcgacatagCgatcataggccatggcggcc	10	7	14	10	3	1	1	1	0	0	1	1	3	1	1	2	5	2	1	2	5	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR5I1,colon,carcinoma,0,2	OR5I1	NM_006637	exon1	c.G371A	p.R124H	ACATAGCGATCAT	.	38	3	37	0	.	0	T	55703506	C	T	55703506	3	4	35	1	0	0	0	0	1	0	0	0	11211	768	27	1	576	1	OR5I1	11	55703506	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	8466741	55703506	79303010	67	5377											
OR10AG1	282770	hgsc.bcm.edu	37	chr11	55735485	55735485	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	agggcaaaaggaaaatttggCatgtttccccaattactaca	15	10	8	8	0	0	0	0	0	0	0	1	1	1	1	2	3	2	3	2	3	7	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR10AG1,NS,carcinoma,0,1	OR10AG1	NM_001005491	exon1	c.G455A	p.C152Y	ATTTGGCATGTTT	.	74	3	52	0	.	0	T	55735485	C	T	55735485	3	4	35	1	0	0	0	0	1	0	0	0	10945	710	25	3	453	3	OR10AG1	11	55735485	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	31979	55735485	79271031	68	5378											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	57184113	57184113	+	Silent	SNP	T	T	C	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	tgctcagctgtttccttctcTtcctttgtggtgccattccc	2	18	7	14	0	2	0	1	0	1	0	6	0	5	0	4	1	3	3	4	1	0	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_017611	exon9	c.A702G	p.E234E	CTTCTCTTCCTTT	.	29	6	12	0	.	.	C	57184113	T	C	57184113	2	2	35	1	0	0	0	0	0	0	0	1	14689	1606	56	4		4	SLC43A3	11	57184113	Silent	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	1448628	57184113	77822403	69	5379											
RTN4RL2	349667	hgsc.bcm.edu	37	chr11	57243730	57243730	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgtttcgcggcctgggCagcctggaccggctgctgct	3	9	15	14	4	0	0	0	0	0	0	1	1	0	1	3	4	3	5	3	4	0	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_178570	exon3	c.C609T	p.G203G	CCTGGGCAGCCTG	.	40	4	20	0	.	.	T	57243730	C	T	57243730	2	4	35	1	0	0	0	0	0	0	0	1	13784	697	25	3		3	RTN4RL2	11	57243730	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	59617	57243730	77762786	70	5380											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63057875	63057875	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tgagaatctctatcccactaGactcaaatctgaggccagag	13	9	8	11	0	3	4	1	2	2	3	5	5	4	4	2	1	0	0	2	1	4	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001039752	exon1	c.G238T	p.D80Y	CCACTAGACTCAA	.	78	8	48	0	.	.	T	63057875	G	T	63057875	3	4	35	1	0	0	0	0	1	0	0	0	14496	942	33	3	240	3	SLC22A10	11	63057875	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	5814145	63057875	71948641	71	5381											
ATM	472	broad.mit.edu	37	chr11	108115752	108115752	+	Splice_Site	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	ggagccaaaacccaagaaaaAggtataaaggaaatgtttac	20	6	9	6	0	0	1	0	0	0	1	0	3	0	3	2	3	3	2	2	3	10	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ATM	NM_000051	exon7	c.A900G	p.K300K	AGAAAAAGGTATA	.	139	4	77	0	.	1657	G	108115752	A	G	108115752	5	3	35	1	0	0	0	0	0	0	1	0	1108	86	3	4	922	4	ATM	11	108115752	Splice_Site	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	45057877	108115752	26890764	72	5382											
ANKK1	255239	broad.mit.edu	37	chr11	113270133	113270133	+	Missense_Mutation	SNP	T	T	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtggcacggcttctggTctcccgtcaggctgacccca	6	9	12	14	2	3	1	1	1	2	0	4	2	3	1	3	4	0	3	3	4	1	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ANKK1	NM_178510	exon8	c.T1442A	p.V481D	TTCTGGTCTCCCG	.	22	3	21	0	.	83	A	113270133	T	A	113270133	3	1	35	1	0	0	0	0	1	0	0	0	627	1667	58	5	1472	5	ANKK1	11	113270133	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	5154381	113270133	21736383	73	5383											
CRTAM	56253	broad.mit.edu	37	chr11	122733141	122733141	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	gggtaaaactgctctctataGtagcagaattttgtttttcc	10	16	8	7	0	1	1	0	0	1	1	3	1	2	1	1	1	3	5	1	1	6	8	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	CRTAM	.	.	.	.	TCTATAGTAGCAG	.	43	3	40	0	.	50	T	122733141	G	T	122733141	3	4	35	1	0	0	0	0	1	0	0	0	3920	1044	36	3		3	CRTAM	11	122733141	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	9463008	122733141	12273375	74	5384											
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	5604050	5604050	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaacatcccaaacctacGtccgagcactgacttcagag	14	6	7	14	2	1	2	1	1	0	1	3	3	3	2	3	0	4	2	3	0	4	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001102654	exon2	c.G709T	p.V237F	ACCTACGTCCGAG	.	63	7	47	0	.	.	T	5604050	G	T	5604050	3	4	35	1	0	0	0	0	1	0	0	0	10744	1145	40	2	715	2	NTF3	12	5604050	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		5604050	128247845	75	5385											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52200419	52200419	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgcccatcctaaacCgcccccctgactgcagccta	7	8	7	19	1	0	1	0	1	0	0	1	1	1	1	7	0	6	3	7	0	3	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014191	exon27	c.C5149T	p.R1717C	CTAAACCGCCCCC	.	48	8	49	0	.	.	T	52200419	C	T	52200419	3	4	35	1	0	0	0	0	1	0	0	0	13978	652	23	1	5251	1	SCN8A	12	52200419	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	46596369	52200419	81651476	76	5386											
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	56335859	56335859	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cacagtaggctggattctagAgaccattggtcagtgcaggg	10	9	14	8	0	2	1	1	0	1	1	2	3	2	2	1	4	1	3	1	4	2	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_201554	exon16	c.A1328C	p.E443A	TTCTAGAGACCAT	.	58	5	47	0	.	.	C	56335859	A	C	56335859	3	2	35	1	0	0	0	0	1	0	0	0	4493	304	11	4	1386	4	DGKA	12	56335859	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	4135440	56335859	77516036	77	5387											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	67700164	67700164	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	taactagtcaacccaaaaggCagtatcttttacttcattcc	13	13	4	11	0	3	0	2	0	1	0	4	0	4	0	2	1	3	2	2	1	7	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018448	exon10	c.C2716T	p.Q906X	AAAAGGCAGTATC	.	78	13	61	0	.	.	T	67700164	C	T	67700164	4	4	35	1	0	0	0	0	0	1	0	0	2633	711	25	3	2754	3	CAND1	12	67700164	Nonsense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	11364305	67700164	66151731	78	5388											
TMEM116	89894	hgsc.bcm.edu;broad.mit.edu	37	chr12	112369579	112369579	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gttggtggaatttgtgctgcGtccagccatatactccacag	8	12	11	10	1	0	0	0	0	0	0	2	1	2	1	3	2	4	2	3	2	3	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TMEM116,colon,carcinoma,0,1	TMEM116	NM_001193531	exon11	c.C860T	p.T287M	TGCTGCGTCCAGC	.	57	3	49	0	.	0	A	112369579	G	A	112369579	3	1	35	1	0	0	0	0	1	0	0	0	16090	1145	40	1	157	1	TMEM116	12	112369579	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	44669415	112369579	21482316	79	5389											
CIT	11113	hgsc.bcm.edu;ucsc.edu	37	chr12	120139737	120139737	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	taattggtgaagtggatacaGctgcagggctctgaggtctc	9	11	14	7	0	2	2	0	2	2	0	3	3	2	3	0	4	3	3	0	4	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001206999	exon42	c.C5331A	p.S1777R	GATACAGCTGCAG	.	41	4	33	0	.	.	T	120139737	G	T	120139737	3	4	35	1	0	0	0	0	1	0	0	0	3461	962	34	3	906	3	CIT	12	120139737	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	7770158	120139737	13712158	80	5390											
ZNF268	10795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	133780814	133780814	+	Missense_Mutation	SNP	A	A	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaaatccttcagtgggAaattacgccttcttgtacac	11	12	9	9	1	2	1	1	1	1	1	3	3	3	2	2	1	2	1	2	1	4	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001165881	exon6	c.A2542G	p.K848E	AGTGGGAAATTAC	.	46	7	47	0	.	.	G	133780814	A	G	133780814	3	3	35	1	0	0	0	0	1	0	0	0	17865	247	9	4		4	ZNF268	12	133780814	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	13641077	133780814	71081	81	5391											
BRCA2	675	hgsc.bcm.edu	37	chr13	32913479	32913479	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	caaatcagtccccttattcaGtcattgaaaattcagcctta	13	13	4	11	0	4	1	4	1	0	0	5	1	5	1	3	0	1	0	3	0	5	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000059	exon11	c.G4987A	p.V1663I	TATTCAGTCATTG	.	78	4	50	0	.	.	A	32913479	G	A	32913479	3	1	35	1	0	0	0	0	1	0	0	0	1501	1029	36	3	5025	3	BRCA2	13	32913479	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		32913479	82256399	82	5392											
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	38357312	38357312	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaataaatttcagcttcCtctagggatttcttgacact	12	16	5	8	0	3	1	1	1	2	0	4	2	4	2	1	1	1	1	1	1	5	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001135958	exon2	c.G159C	p.E53D	AGCTTCCTCTAGG	.	52	7	55	0	.	.	G	38357312	C	G	38357312	3	3	35	1	0	0	0	0	1	0	0	0	16641	680	24	5	2829	5	TRPC4	13	38357312	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	5443833	38357312	76812566	83	5393											
FREM2	341640	ucsc.edu;bcgsc.ca	37	chr13	39433640	39433640	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	actttcagcctggctcccggGtacagtgcgcagctcgtgct	5	10	12	14	3	1	0	1	0	0	0	3	0	2	0	2	2	5	5	2	2	1	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FREM2,caecum,carcinoma,-1,1	FREM2	NM_207361	exon14	c.G7432T	p.V2478L	TCCCGGGTACAGT	.	25	4	28	0	.	385	T	39433640	G	T	39433640	3	4	35	1	0	0	0	0	1	0	0	0	6080	1261	44	3	7486	3	FREM2	13	39433640	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	1076328	39433640	75736238	84	5394											
SAV1	60485	broad.mit.edu	37	chr14	51107521	51107521	+	Nonsense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaatttctgcagtatgAtatggatttgcaggtaccag	11	13	11	6	0	2	1	1	1	1	0	2	3	2	3	1	3	3	4	1	3	4	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SAV1	NM_021818	exon4	c.T897G	p.Y299X	AGTATGATATGGA	.	80	3	73	0	.	18	C	51107521	A	C	51107521	4	2	35	1	0	0	0	0	0	1	0	0	13909	340	12	4	262	4	SAV1	14	51107521	Nonsense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09		51107521	56242019	85	5395											
TBPL2	387332	bcgsc.ca	37	chr14	55903453	55903453	+	Missense_Mutation	SNP	C	T	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	acaaactgctgctgtttaagCccagcccaacgtcctgttcg	9	10	8	14	2	0	0	0	0	0	0	2	0	1	0	3	0	6	4	3	0	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	TBPL2	NM_199047	exon2	c.G434A	p.G145D	TTTAAGCCCAGCC	.	67	4	94	0	.	27	T	55903453	T	T	55903453	3	4	35	1	0	0	0	0	1	0	0	0	15706	739	26	3	717	3	TBPL2	14	55903453	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	4795932	55903453	51446087	86	5396											
SLC8A3	6547	broad.mit.edu	37	chr14	70634323	70634323	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	accctctgtctctatgataaTtcctcggtgtttgtctgtgc	5	17	8	11	1	3	1	0	1	3	0	6	1	4	1	2	1	1	1	2	1	2	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLC8A3	NM_183002	exon2	c.A817C	p.I273L	TGATAATTCCTCG	.	38	3	49	0	.	234	G	70634323	T	G	70634323	3	3	35	1	0	0	0	0	1	0	0	0	14763	1493	52	4	2105	4	SLC8A3	14	70634323	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09	14730870	70634323	36715217	87	5397											
ADAM21	8747	hgsc.bcm.edu	37	chr14	70924559	70924559	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	actgttactatcatggttacGtggaggcagcccctgagtct	8	12	11	10	1	2	1	1	1	1	0	2	2	2	2	2	3	3	3	2	3	3	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ADAM21,NS,NS,0,1	ADAM21	NM_003813	exon2	c.G343A	p.V115M	GGTTACGTGGAGG	.	47	2	30	0	.	0	A	70924559	G	A	70924559	3	1	35	1	0	0	0	0	1	0	0	0	242	1145	40	1	345	1	ADAM21	14	70924559	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	290236	70924559	36424981	88	5398											
SHC4	399694	hgsc.bcm.edu;ucsc.edu	37	chr15	49254750	49254750	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	atcaggggttagggcggttgCcctgtgtcccaccaggtcct	5	10	14	12	1	1	0	1	0	0	0	3	0	3	0	4	5	1	2	4	5	1	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_203349	exon1	c.G463A	p.A155T	CGGTTGCCCTGTG	.	42	4	43	0	.	.	T	49254750	C	T	49254750	3	4	35	1	0	0	0	0	1	0	0	0	14328	739	26	3	1477	3	SHC4	15	49254750	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09		49254750	53276642	89	5399											
THSD4	79875	hgsc.bcm.edu	37	chr15	71952877	71952877	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gtctttttgcagagcattggCtgtgatgactacttaggctc	7	15	11	8	0	1	3	0	2	1	1	2	3	1	3	0	2	3	4	0	2	2	5	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_024817	exon7	c.C1161T	p.G387G	CATTGGCTGTGAT	.	73	3	44	0	.	.	T	71952877	C	T	71952877	2	4	35	1	0	0	0	0	0	0	0	1	15938	784	28	3		3	THSD4	15	71952877	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	22698127	71952877	30578515	90	5400											
MYO9A	4649	broad.mit.edu	37	chr15	72190344	72190344	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	tgttgctgcaactgtttttgCctttcttccttctcagtgtt	3	21	7	10	0	2	0	1	0	2	0	4	0	3	0	2	0	4	5	2	0	1	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	MYO9A	NM_006901	exon25	c.G4500C	p.R1500S	TTTTTGCCTTTCT	.	69	3	44	0	.	203	G	72190344	C	G	72190344	3	3	35	1	0	0	0	0	1	0	0	0	10132	738	26	5	3218	5	MYO9A	15	72190344	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	237467	72190344	30341048	91	5401											
NPTN	27020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	73889442	73889442	+	Silent	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	aagtcattcctcttggggtcGttgctggccctgcactcgta	5	13	11	12	2	2	0	1	0	1	0	5	0	3	0	2	3	2	4	2	3	2	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	NPTN,caecum,carcinoma,0,1	NPTN	NM_001161363	exon2	c.C360T	p.N120N	GGGGTCGTTGCTG	.	47	10	47	0	.	0	A	73889442	G	A	73889442	2	1	35	1	0	0	0	0	0	0	0	1	10649	1136	40	1		1	NPTN	15	73889442	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	1699098	73889442	28641950	92	5402											
SLCO3A1	28232	broad.mit.edu	37	chr15	92706141	92706141	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ccatcgcgctcaaatccttcGccttcatcctgtacaccacc	8	10	4	19	3	2	0	2	0	0	0	6	0	4	0	6	0	1	2	6	0	2	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLCO3A1	NM_013272	exon10	c.G1909T	p.A637S	TCCTTCGCCTTCA	.	36	3	27	0	.	84	T	92706141	G	T	92706141	3	4	35	1	0	0	0	0	1	0	0	0	14783	1087	38	2	1947	2	SLCO3A1	15	92706141	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	18816699	92706141	9825251	93	5403											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	49823430	49823430	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	cggaggaatcccaggccagcGagaagtctgaggcctccccc	9	4	13	15	2	1	2	0	1	1	1	3	5	3	4	5	4	1	0	5	4	2	0	rs377503772		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZNF423_ENST00000262383,colon,carcinoma,0,2	ZNF423_ENST00000262383	NM_015069	exon2	c.C44T	p.S15L	GCCAGCGAGAAGT	.	59	7	55	0	.	0	A	49823430	G	A	49823430	3	1	35	1	0	0	0	0	1	0	0	0	17955	1059	37	1	3838	1	ZNF423	16	49823430	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		49823430	40531323	94	5404											
SALL1	6299	broad.mit.edu	37	chr16	51173869	51173869	+	Missense_Mutation	SNP	A	A	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gcgggggcatagcacgatggAcactgtagtgggttttaaga	10	9	16	6	2	0	1	0	0	0	1	0	3	0	2	0	4	1	4	0	4	3	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SALL1	NM_002968	exon2	c.T2264G	p.V755G	CGATGGACACTGT	.	57	5	55	0	.	301	C	51173869	A	C	51173869	3	2	35	1	0	0	0	0	1	0	0	0	13862	275	10	4	1718	4	SALL1	16	51173869	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	1350439	51173869	39180884	95	5405											
SPATA20	64847	broad.mit.edu	37	chr17	48626266	48626266	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgaggactttgtgagtGtgaaggtagaccgtgaggag	10	10	17	4	1	1	5	1	4	0	1	1	7	1	7	1	3	0	1	1	3	2	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SPATA20	NM_022827	exon5	c.G457T	p.V153L	GTGAGTGTGAAGG	.	47	3	39	0	.	59	T	48626266	G	T	48626266	3	4	35	1	0	0	0	0	1	0	0	0	15062	1377	48	3	475	3	SPATA20	17	48626266	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		48626266	32568944	96	5406											
CA10	56934	hgsc.bcm.edu;bcgsc.ca	37	chr17	49710967	49710967	+	Silent	SNP	G	G	T	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcactcatgctcagaaaGatctgagatggctggttctg	9	13	11	8	0	5	3	3	1	2	3	5	4	5	3	0	2	1	3	0	2	1	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	CA10,NS,carcinoma,0,1	CA10	NM_001082534	exon9	c.C834A	p.I278I	CAGAAAGATCTGA	.	60	4	42	0	.	0	T	49710967	G	T	49710967	2	4	35	1	0	0	0	0	0	0	0	1	2529	932	33	3		3	CA10	17	49710967	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	1084701	49710967	31484243	97	5407											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56699023	56699023	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	gtactcacccctgcacgaggCccccacaccaggacgggctg	8	4	11	18	2	1	0	1	0	0	0	1	2	1	1	5	3	2	3	5	3	1	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_198393	exon5	c.G542A	p.G181D	ACGAGGCCCCCAC	.	42	5	30	0	.	.	T	56699023	C	T	56699023	3	4	35	1	0	0	0	0	1	0	0	0	15837	739	26	3	4049	3	TEX14	17	56699023	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	6988056	56699023	24496187	98	5408											
ARHGAP28	79822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	6873450	6873450	+	Missense_Mutation	SNP	G	G	C	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gatttggcttaactgaagcaGgagatctgtctgctgaagac	11	11	12	7	0	2	4	0	2	2	2	2	6	2	4	0	2	3	3	0	2	3	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001010000	exon7	c.G520C	p.G174R	GAAGCAGGAGATC	.	73	9	43	0	.	.	C	6873450	G	C	6873450	3	2	35	1	0	0	0	0	1	0	0	0	874	1001	35	5	542	5	ARHGAP28	18	6873450	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		6873450	71203798	99	5409											
RTTN	25914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	67742716	67742716	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	aatggcagtgatataaaagaGcctgaagggcaggttttcca	14	9	12	6	0	0	3	0	2	0	1	1	3	1	3	2	3	1	3	2	3	5	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_173630	exon33	c.C4436T	p.A1479V	AAAAGAGCCTGAA	.	47	7	40	0	.	.	A	67742716	G	A	67742716	3	1	35	1	0	0	0	0	1	0	0	0	13789	971	34	3	2312	3	RTTN	18	67742716	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	60869266	67742716	10334532	100	5410											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1065137	1065137	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagagcacggcgtggaGgacttttccgtgagccagac	8	6	16	11	4	0	3	0	1	0	2	1	5	1	5	2	4	2	2	2	4	0	2	rs367736927	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_019112	exon46	c.G6252A	p.E2084E	CGTGGAGGACTTT	.	42	7	28	0	.	.	A	1065137	G	A	1065137	2	1	35	1	0	0	0	0	0	0	0	1	37	991	35	3		3	ABCA7	19	1065137	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09		1065137	58063846	101	5411											
SMARCA4	6597	broad.mit.edu	37	chr19	11141508	11141508	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	cacccgggctggggggctcgGcctgaacctccagtcggcag	5	5	16	15	3	0	1	0	1	0	0	3	1	1	1	4	6	1	3	4	6	1	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SMARCA4_ENST00000358026,right_upper_lobe,carcinoma,+1,3	SMARCA4	NM_003072	exon25	c.G3485T	p.G1162V	GGCTCGGCCTGAA	.	99	5	79	0	.	502	T	11141508	G	T	11141508	3	4	35	1	0	0	0	0	1	0	0	0	14824	1203	42	3	3579	3	SMARCA4	19	11141508	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	10076371	11141508	47987475	102	5412											
TM6SF2	53345	hgsc.bcm.edu	37	chr19	19377337	19377337	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	aaacaccaaggcccagtctgGaagccaggagcaaccaggga	15	2	12	12	0	1	0	0	0	1	0	1	3	1	3	4	4	4	1	4	4	4	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TM6SF2,NS,carcinoma,0,1	TM6SF2	NM_001001524	exon9	c.C886T	p.P296S	AGTCTGGAAGCCA	.	63	2	33	0	.	0	A	19377337	G	A	19377337	3	1	35	1	0	0	0	0	1	0	0	0	16033	1174	41	3	255	3	TM6SF2	19	19377337	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	8235829	19377337	39751646	103	5413											
ZNF569	148266	hgsc.bcm.edu	37	chr19	37905042	37905042	+	Nonsense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	gggatgagctattaccatatGatttcacaggttcattatat	12	15	8	6	0	2	2	2	2	0	0	2	3	2	3	1	2	2	2	1	2	5	7	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_152484	exon6	c.C518A	p.S173X	CCATATGATTTCA	.	74	4	46	0	.	.	T	37905042	G	T	37905042	4	4	35	1	0	0	0	0	0	1	0	0	18057	1294	45	3	1546	3	ZNF569	19	37905042	Nonsense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	18527705	37905042	21223941	104	5414											
RYR1	6261	hgsc.bcm.edu	37	chr19	39016093	39016093	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	catcggcctgaatatgtgtgCgcccaccgaccaagacctca	10	7	9	15	3	1	2	1	1	0	1	2	3	1	2	5	1	1	0	5	1	3	1	rs374061380		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RYR1,colon,carcinoma,0,1	RYR1	NM_000540	exon71	c.C10577T	p.A3526V	TGTGTGCGCCCAC	.	47	2	26	0	.	0	T	39016093	C	T	39016093	3	4	35	1	0	0	0	0	1	0	0	0	13820	768	27	1	10859	1	RYR1	19	39016093	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	1111051	39016093	20112890	105	5415											
LILRB5	10990	bcgsc.ca	37	chr19	54754843	54754843	+	Missense_Mutation	SNP	A	G	G	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ggaacgtggtgggggtggggAggcctgggggcctggagagg	5	5	26	5	1	0	1	0	0	0	1	0	4	0	3	2	11	1	0	2	11	1	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	LILRB5	.	.	.	.	GTGGGGAGGCCTG	.	79	14	49	1	.	176	G	54754843	G	G	54754843	3	3	35	1	0	0	0	0	1	0	0	0	8834	319	11	4		4	LILRB5	19	54754843	Missense_Mutation	SNP	A	TCGA-ZU-A8S4-01A-11D-A417-09	15738750	54754843	4374140	106	5416											
NLRP8	126205	hgsc.bcm.edu	37	chr19	56466176	56466176	+	Missense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ttgccaagaggtgaaccagaCgacagaccagagcttctccg	12	6	11	12	2	1	5	0	1	1	4	2	6	1	5	4	1	3	1	4	1	2	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	NLRP8_ENST00000291971,bladder,carcinoma,0,1	NLRP8_ENST00000291971	NM_176811	exon3	c.C752T	p.T251M	ACCAGACGACAGA	.	69	3	28	1	.	0	T	56466176	C	T	56466176	3	4	35	1	0	0	0	0	1	0	0	0	10530	536	19	1	762	1	NLRP8	19	56466176	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	1711333	56466176	2662807	107	5417											
DEFB126	81623	hgsc.bcm.edu	37	chr20	126314	126314	+	Missense_Mutation	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	gtcttcgatggctcctacccCcgtttctcccactggttgaa	5	13	8	15	2	2	1	0	1	2	0	5	2	3	1	4	2	1	3	4	2	2	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	DEFB126,NS,carcinoma,0,1	DEFB126	NM_030931	exon2	c.C317G	p.P106R	CTACCCCCGTTTC	.	35	2	19	0	.	0	G	126314	C	G	126314	3	3	35	1	0	0	0	0	1	0	0	0	4439	623	22	5	323	5	DEFB126	20	126314	Missense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09		126314	62899206	108	5418											
PYGB	5834	hgsc.bcm.edu	37	chr20	25269107	25269107	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgcccaggactgttatGattgggggcaaggtgagtga	8	12	16	5	0	0	3	0	3	0	0	0	4	0	4	1	4	1	2	1	4	2	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	PYGB,NS,carcinoma,0,1	PYGB	NM_002862	exon15	c.G1815T	p.M605I	TGTTATGATTGGG	.	45	2	33	0	.	0	T	25269107	G	T	25269107	3	4	35	1	0	0	0	0	1	0	0	0	12912	1290	45	3	1873	3	PYGB	20	25269107	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	25142793	25269107	37756413	109	5419											
AURKA	6790	hgsc.bcm.edu	37	chr20	54963211	54963211	+	Splice_Site	SNP	C	C	G	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	attacagattattcaatttaCcttaacaggtcctgaaatgc	14	14	5	8	0	1	2	1	1	0	1	2	2	2	2	2	1	4	0	2	1	6	6	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	AURKA,NS,carcinoma,0,1	AURKA	NM_198434	exon4	c.42+1G>C	.	AATTTACCTTAAC	.	75	4	69	1	.	0	G	54963211	C	G	54963211	5	3	35	1	0	0	0	0	0	0	1	0	1219	521	18	5	1200	5	AURKA	20	54963211	Splice_Site	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	29694104	54963211	8062309	110	5420											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu	37	chr21	43279219	43279219	+	Silent	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcccactgagccgccTcaccaggcctgcagggactg	6	6	12	17	1	1	1	1	1	0	0	1	2	1	2	5	2	4	2	5	2	0	0	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_022115	exon10	c.A1150C	p.R384R	GCCGCCTCACCAG	.	44	4	31	0	.	.	G	43279219	T	G	43279219	2	3	35	1	0	0	0	0	0	0	0	1	12508	1550	54	4		4	PRDM15	21	43279219	Silent	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09		43279219	4850676	111	5421											
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	chr21	47690365	47690365	+	Missense_Mutation	SNP	G	G	T	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggtaagaagctgactGgaccagtttgaaaaatctca	14	10	10	7	0	2	3	2	2	1	1	3	4	2	4	1	2	1	4	1	2	4	3	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_003906	exon9	c.C2578A	p.Q860K	CTGACTGGACCAG	.	102	4	83	0	.	.	T	47690365	G	T	47690365	3	4	35	1	0	0	0	0	1	0	0	0	9438	1357	47	3	3444	3	MCM3AP	21	47690365	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	4411146	47690365	439530	112	5422											
HSCB	150274	broad.mit.edu	37	chr22	29138126	29138126	+	Missense_Mutation	SNP	T	T	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	ctttgctccgggtgtgggggTtttggccgacaggggttccc	2	12	17	10	2	0	0	0	0	0	0	2	1	2	0	3	6	1	3	3	6	0	4	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	HSCB	NM_172002	exon1	c.T43G	p.F15V	TGGGGGTTTTGGC	.	55	9	35	5	.	16	G	29138126	T	G	29138126	3	3	35	1	0	0	0	0	1	0	0	0	7415	1725	60	4	45	4	HSCB	22	29138126	Missense_Mutation	SNP	T	TCGA-ZU-A8S4-01A-11D-A417-09		29138126	22166440	113	5423											
ZNRF3	84133	hgsc.bcm.edu	37	chr22	29445659	29445659	+	Missense_Mutation	SNP	G	G	A	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cgcaccccggggcccggcccGtgcctttcctccgagcggca	3	5	13	20	6	0	0	0	0	0	0	2	1	2	0	7	4	2	2	7	4	0	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZNRF3,NS,carcinoma,0,1	ZNRF3	NM_001206998	exon8	c.G1490A	p.R497H	CGGCCCGTGCCTT	.	15	2	7	0	.	0	A	29445659	G	A	29445659	3	1	35	1	0	0	0	0	1	0	0	0	18255	1145	40	1	1216	1	ZNRF3	22	29445659	Missense_Mutation	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	307533	29445659	21858907	114	5424											
PICK1	9463	broad.mit.edu	37	chr22	38463728	38463728	+	Silent	SNP	C	C	T	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	cagggggaggtgaccatccaCtacaacaagctgcaggcgga	12	4	14	11	1	0	1	0	1	0	0	1	3	1	3	2	5	4	2	2	5	3	1	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	PICK1	NM_012407	exon5	c.C300T	p.H100H	CATCCACTACAAC	.	35	3	20	0	.	30	T	38463728	C	T	38463728	2	4	35	1	0	0	0	0	0	0	0	1	11929	564	20	3		3	PICK1	22	38463728	Silent	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09	9018069	38463728	12840838	115	5425											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	41088540	41088540	+	Nonsense_Mutation	SNP	C	C	T	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaggaattccagatgacCgagatgggctgtttgacaca	13	9	12	7	1	0	5	0	3	0	2	1	7	1	6	2	2	0	2	2	2	2	2	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001039591	exon42	c.C7096T	p.R2366X	GATGACCGAGATG	.	79	17	58	0	.	.	T	41088540	C	T	41088540	4	4	35	1	0	0	0	0	0	1	0	0	17150	644	23	1	7258	1	USP9X	23	41088540	Nonsense_Mutation	SNP	C	TCGA-ZU-A8S4-01A-11D-A417-09		41088540	114182020	116	5426											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	11	6	19	5	3	1	2	1	0	0	2	2	6	2	4	1	5	1	2	1	5	4	2	rs2801626		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	59	4	55	0	.	28	A	51076024	G	A	51076024	2	1	35	1	0	0	0	0	0	0	0	1	10774	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-ZU-A8S4-01A-11D-A417-09	9987484	51076024	104194536	117	5427											
