This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 68 focal events and 12 molecular subtypes across 516 patients, 486 significant findings detected with P value < 0.05 and Q value < 0.25.
-
amp_1p22.3 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
amp_1q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
amp_3q26.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_5p15.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_6p21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_7p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_7q31.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_8p11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_11q13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_12p12.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_12q14.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_12q15 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_14q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_17q12 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_17q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_18q11.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_19q12 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_20q13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_22q11.22 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_1p36.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_1p13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
del_3p26.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3p21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_3q11.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_3q29 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_4p16.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_4q34.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_5q12.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_5q31.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_6q11.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
del_6q22.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
del_6q26 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
del_8p23.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_8p11.21 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
-
del_9p23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
del_9q21.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_10p15.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_10q26.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_11p15.5 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_11q23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
del_11q25 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_12p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_12q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_12q24.33 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
del_13q12.11 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_13q12.13 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_13q34 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_14q32.12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
del_15q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_15q15.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_16q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_17p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_18q21.32 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_19q11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_19q13.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_20p13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_20q13.12 cnv correlated to 'MRNA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
del_21q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_22q13.32 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_xp22.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 68 focal events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 486 significant findings detected.
|
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| del 8p23 2 | 257 (50%) | 259 |
0.0233 (0.0441) |
0.0481 (0.0811) |
1e-05 (4.46e-05) |
0.0382 (0.0674) |
0.00924 (0.0195) |
8e-05 (0.000269) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00035 (0.00102) |
0.0102 (0.0212) |
0.0212 (0.0409) |
0.00077 (0.00207) |
| del 13q14 2 | 282 (55%) | 234 |
0.0119 (0.0244) |
0.0238 (0.0449) |
1e-05 (4.46e-05) |
0.00503 (0.0113) |
0.00868 (0.0185) |
0.00256 (0.00613) |
9e-05 (0.000299) |
1e-05 (4.46e-05) |
0.00195 (0.00479) |
0.00524 (0.0117) |
0.0497 (0.0834) |
7e-05 (0.00024) |
| del 13q12 11 | 294 (57%) | 222 |
0.00077 (0.00207) |
0.0229 (0.0436) |
1e-05 (4.46e-05) |
0.00142 (0.00361) |
0.00693 (0.0152) |
0.00023 (0.000695) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
0.00338 (0.00786) |
0.0038 (0.00876) |
0.242 (0.311) |
0.00081 (0.00215) |
| amp 3q26 2 | 171 (33%) | 345 |
0.00024 (0.000717) |
0.00178 (0.00439) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.43 (0.505) |
0.0117 (0.0241) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
0.459 (0.531) |
1e-05 (4.46e-05) |
| amp 7p11 2 | 272 (53%) | 244 |
0.922 (0.942) |
0.815 (0.858) |
1e-05 (4.46e-05) |
0.0347 (0.0626) |
0.00316 (0.00743) |
0.0074 (0.0161) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
5e-05 (0.000175) |
1e-05 (4.46e-05) |
| amp 8q24 21 | 322 (62%) | 194 |
0.0073 (0.0159) |
0.0264 (0.0486) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.738 (0.792) |
0.953 (0.969) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00016 (0.000502) |
0.0463 (0.0786) |
1e-05 (4.46e-05) |
| amp 11q13 3 | 170 (33%) | 346 |
0.00116 (0.00302) |
0.00012 (0.000389) |
1e-05 (4.46e-05) |
5e-05 (0.000175) |
0.0461 (0.0784) |
0.92 (0.941) |
0.00015 (0.000474) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.466 (0.539) |
0.00024 (0.000717) |
| amp 20q13 33 | 244 (47%) | 272 |
0.00314 (0.00741) |
0.0149 (0.0299) |
1e-05 (4.46e-05) |
3e-05 (0.000112) |
0.0561 (0.0926) |
0.426 (0.503) |
0.00161 (0.00402) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
0.0232 (0.044) |
1e-05 (4.46e-05) |
| del 4q34 3 | 188 (36%) | 328 |
0.00455 (0.0103) |
0.00566 (0.0126) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.137 (0.199) |
0.255 (0.325) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0236 (0.0446) |
1e-05 (4.46e-05) |
| del 13q12 13 | 293 (57%) | 223 |
0.00891 (0.0189) |
0.0651 (0.103) |
1e-05 (4.46e-05) |
0.00158 (0.00397) |
0.0087 (0.0185) |
0.0006 (0.00168) |
5e-05 (0.000175) |
1e-05 (4.46e-05) |
0.00419 (0.00955) |
0.00585 (0.013) |
0.212 (0.283) |
0.00068 (0.00188) |
| del 13q34 | 243 (47%) | 273 |
0.0241 (0.0452) |
0.0834 (0.129) |
1e-05 (4.46e-05) |
0.0394 (0.0691) |
0.00123 (0.00317) |
0.0208 (0.0402) |
0.0005 (0.00142) |
1e-05 (4.46e-05) |
0.00773 (0.0166) |
0.0201 (0.0391) |
0.224 (0.294) |
0.0217 (0.0415) |
| amp 5p15 33 | 328 (64%) | 188 |
0.0576 (0.0943) |
0.225 (0.295) |
1e-05 (4.46e-05) |
0.00157 (0.00395) |
0.0403 (0.0706) |
0.0424 (0.0735) |
0.0231 (0.044) |
0.0002 (0.000614) |
0.00142 (0.00361) |
0.00081 (0.00215) |
0.361 (0.433) |
1e-05 (4.46e-05) |
| amp 12p12 1 | 179 (35%) | 337 |
0.198 (0.266) |
0.0381 (0.0674) |
1e-05 (4.46e-05) |
0.00284 (0.00676) |
0.039 (0.0686) |
0.45 (0.523) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
2e-05 (7.92e-05) |
0.676 (0.74) |
1e-05 (4.46e-05) |
| amp 17q12 | 226 (44%) | 290 |
0.122 (0.18) |
0.0474 (0.08) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.307 (0.379) |
0.0171 (0.0339) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.543 (0.607) |
3e-05 (0.000112) |
| amp 19q12 | 137 (27%) | 379 |
0.0938 (0.143) |
0.0416 (0.0725) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.787 (0.834) |
0.234 (0.304) |
1e-05 (4.46e-05) |
4e-05 (0.000145) |
1e-05 (4.46e-05) |
0.00019 (0.000585) |
0.0446 (0.0765) |
0.00014 (0.000446) |
| del 10q26 3 | 156 (30%) | 360 |
0.275 (0.344) |
0.132 (0.193) |
0.00038 (0.0011) |
0.0384 (0.0677) |
8e-05 (0.000269) |
0.00023 (0.000695) |
0.00289 (0.00686) |
1e-05 (4.46e-05) |
0.0124 (0.0253) |
0.00137 (0.0035) |
0.0586 (0.095) |
0.00123 (0.00317) |
| del 17p13 3 | 281 (54%) | 235 |
0.665 (0.728) |
0.558 (0.622) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
0.00072 (0.00196) |
0.00118 (0.00307) |
3e-05 (0.000112) |
1e-05 (4.46e-05) |
0.013 (0.0264) |
0.0249 (0.0465) |
0.921 (0.941) |
0.00208 (0.00508) |
| del 22q13 32 | 255 (49%) | 261 |
0.025 (0.0466) |
0.081 (0.126) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.518 (0.587) |
0.351 (0.422) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
2e-05 (7.92e-05) |
0.0152 (0.0305) |
4e-05 (0.000145) |
| amp 1q21 3 | 372 (72%) | 144 |
0.856 (0.893) |
1 (1.00) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0631 (0.101) |
0.0239 (0.045) |
1e-05 (4.46e-05) |
8e-05 (0.000269) |
0.00416 (0.00951) |
0.00101 (0.00265) |
0.00498 (0.0113) |
0.172 (0.238) |
| amp 8p11 21 | 173 (34%) | 343 |
0.436 (0.51) |
0.636 (0.698) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.238 (0.306) |
0.868 (0.901) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00042 (0.0012) |
0.00011 (0.00036) |
0.0131 (0.0264) |
0.00021 (0.000642) |
| amp 18q11 2 | 103 (20%) | 413 |
0.196 (0.264) |
0.02 (0.0391) |
4e-05 (0.000145) |
1e-05 (4.46e-05) |
0.0581 (0.0945) |
0.374 (0.448) |
0.00013 (0.000416) |
6e-05 (0.000207) |
8e-05 (0.000269) |
2e-05 (7.92e-05) |
0.428 (0.504) |
3e-05 (0.000112) |
| del 3p21 31 | 246 (48%) | 270 |
0.253 (0.324) |
0.143 (0.206) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0323 (0.0584) |
0.179 (0.246) |
0.0017 (0.00422) |
1e-05 (4.46e-05) |
4e-05 (0.000145) |
1e-05 (4.46e-05) |
0.598 (0.663) |
5e-05 (0.000175) |
| del 5q12 1 | 177 (34%) | 339 |
0.22 (0.29) |
0.182 (0.25) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.055 (0.0916) |
0.512 (0.584) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0121 (0.0248) |
1e-05 (4.46e-05) |
| del 11p15 5 | 143 (28%) | 373 |
0.266 (0.335) |
0.032 (0.058) |
1e-05 (4.46e-05) |
0.00089 (0.00235) |
0.625 (0.688) |
0.33 (0.401) |
4e-05 (0.000145) |
1e-05 (4.46e-05) |
0.00019 (0.000585) |
0.00025 (0.000745) |
0.0706 (0.11) |
0.00042 (0.0012) |
| del 15q11 2 | 262 (51%) | 254 |
0.265 (0.334) |
0.142 (0.204) |
1e-05 (4.46e-05) |
0.00107 (0.0028) |
0.0541 (0.0903) |
0.0064 (0.0141) |
0.00087 (0.0023) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
0.00674 (0.0148) |
0.311 (0.383) |
8e-05 (0.000269) |
| del 15q15 1 | 274 (53%) | 242 |
0.16 (0.225) |
0.0647 (0.103) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
0.0588 (0.0952) |
0.0158 (0.0317) |
0.00011 (0.00036) |
1e-05 (4.46e-05) |
3e-05 (0.000112) |
0.00031 (0.000907) |
0.231 (0.301) |
2e-05 (7.92e-05) |
| del 16q23 1 | 170 (33%) | 346 |
0.086 (0.132) |
1 (1.00) |
2e-05 (7.92e-05) |
3e-05 (0.000112) |
0.198 (0.266) |
0.00168 (0.00418) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0217 (0.0415) |
0.00331 (0.00774) |
0.862 (0.896) |
0.00053 (0.0015) |
| del 21q11 2 | 185 (36%) | 331 |
0.227 (0.297) |
0.238 (0.306) |
1e-05 (4.46e-05) |
0.0272 (0.0501) |
0.00708 (0.0154) |
0.172 (0.238) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00018 (0.000563) |
0.439 (0.512) |
0.00028 (0.000825) |
| amp 12q14 1 | 168 (33%) | 348 |
0.506 (0.579) |
0.137 (0.199) |
1e-05 (4.46e-05) |
0.00015 (0.000474) |
0.377 (0.449) |
0.583 (0.648) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.35 (0.422) |
1e-05 (4.46e-05) |
| amp 12q15 | 171 (33%) | 345 |
0.36 (0.433) |
0.0633 (0.101) |
1e-05 (4.46e-05) |
5e-05 (0.000175) |
0.208 (0.278) |
0.096 (0.146) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.436 (0.51) |
1e-05 (4.46e-05) |
| amp 14q13 3 | 229 (44%) | 287 |
0.484 (0.556) |
0.31 (0.382) |
1e-05 (4.46e-05) |
3e-05 (0.000112) |
0.0828 (0.128) |
0.851 (0.891) |
0.00072 (0.00196) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.188 (0.257) |
0.00013 (0.000416) |
| amp 17q23 1 | 249 (48%) | 267 |
0.0785 (0.122) |
0.3 (0.371) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.238 (0.306) |
0.0554 (0.0918) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
0.702 (0.759) |
2e-05 (7.92e-05) |
| del 1p36 11 | 125 (24%) | 391 |
0.435 (0.509) |
0.125 (0.184) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.234 (0.304) |
0.129 (0.189) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0248 (0.0463) |
0.0623 (0.1) |
0.0174 (0.0345) |
0.00854 (0.0183) |
| del 3p26 2 | 236 (46%) | 280 |
0.168 (0.234) |
0.315 (0.385) |
3e-05 (0.000112) |
0.00012 (0.000389) |
0.0623 (0.1) |
0.302 (0.373) |
0.0357 (0.064) |
1e-05 (4.46e-05) |
3e-05 (0.000112) |
0.00022 (0.00067) |
0.796 (0.841) |
0.00044 (0.00125) |
| del 4p16 3 | 131 (25%) | 385 |
0.803 (0.846) |
0.846 (0.886) |
0.00136 (0.00349) |
0.00039 (0.00113) |
0.905 (0.927) |
0.314 (0.384) |
0.0095 (0.02) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.728 (0.783) |
0.00072 (0.00196) |
| del 5q31 1 | 208 (40%) | 308 |
0.197 (0.266) |
0.145 (0.208) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0615 (0.0989) |
0.251 (0.321) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.399 (0.475) |
1e-05 (4.46e-05) |
| del 9q21 11 | 256 (50%) | 260 |
0.0643 (0.102) |
0.539 (0.606) |
1e-05 (4.46e-05) |
7e-05 (0.00024) |
0.274 (0.343) |
0.0578 (0.0944) |
0.00557 (0.0125) |
2e-05 (7.92e-05) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
0.19 (0.258) |
0.00019 (0.000585) |
| del 10p15 3 | 126 (24%) | 390 |
1 (1.00) |
1 (1.00) |
0.00644 (0.0142) |
0.00982 (0.0205) |
0.136 (0.197) |
0.122 (0.18) |
0.134 (0.195) |
0.00202 (0.00495) |
0.00242 (0.00584) |
0.0188 (0.0369) |
0.032 (0.058) |
0.0122 (0.0248) |
| del 11q23 2 | 119 (23%) | 397 |
0.453 (0.526) |
0.689 (0.749) |
1e-05 (4.46e-05) |
0.00024 (0.000717) |
0.0372 (0.0665) |
0.336 (0.407) |
3e-05 (0.000112) |
0.00067 (0.00186) |
0.00248 (0.00597) |
0.0553 (0.0918) |
0.0444 (0.0764) |
0.312 (0.383) |
| del 19p13 3 | 283 (55%) | 233 |
0.255 (0.325) |
1 (1.00) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.52 (0.587) |
0.236 (0.305) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.104 (0.157) |
0.00078 (0.00209) |
| del 19p13 2 | 280 (54%) | 236 |
0.745 (0.798) |
0.897 (0.922) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.698 (0.755) |
0.157 (0.222) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0589 (0.0952) |
0.00078 (0.00209) |
| del 19p13 2 | 270 (52%) | 246 |
0.693 (0.751) |
1 (1.00) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.893 (0.92) |
0.0677 (0.107) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0534 (0.0895) |
9e-05 (0.000299) |
| del 19q11 | 134 (26%) | 382 |
1 (1.00) |
0.881 (0.91) |
1e-05 (4.46e-05) |
0.00072 (0.00196) |
0.0903 (0.138) |
0.317 (0.387) |
0.00257 (0.00613) |
0.00221 (0.00538) |
0.00148 (0.00375) |
0.00028 (0.000825) |
0.413 (0.489) |
0.0443 (0.0764) |
| del 19q13 33 | 194 (38%) | 322 |
0.52 (0.587) |
0.0959 (0.146) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.287 (0.356) |
0.174 (0.241) |
3e-05 (0.000112) |
2e-05 (7.92e-05) |
2e-05 (7.92e-05) |
1e-05 (4.46e-05) |
0.573 (0.638) |
0.0114 (0.0235) |
| del 20p13 | 131 (25%) | 385 |
0.105 (0.158) |
0.224 (0.294) |
1e-05 (4.46e-05) |
0.00058 (0.00163) |
0.00344 (0.00797) |
0.00041 (0.00118) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.952 (0.969) |
0.709 (0.764) |
0.366 (0.439) |
0.0146 (0.0295) |
| amp 6p21 1 | 190 (37%) | 326 |
0.637 (0.698) |
0.223 (0.294) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0998 (0.151) |
0.467 (0.539) |
0.0539 (0.0901) |
0.00976 (0.0205) |
0.0352 (0.0633) |
0.00776 (0.0167) |
0.35 (0.422) |
0.0285 (0.0521) |
| amp 7q31 2 | 214 (41%) | 302 |
0.956 (0.97) |
0.414 (0.49) |
1e-05 (4.46e-05) |
0.184 (0.252) |
0.157 (0.222) |
0.227 (0.297) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00121 (0.00313) |
0.00161 (0.00402) |
0.114 (0.169) |
2e-05 (7.92e-05) |
| amp xq28 | 157 (30%) | 359 |
0.191 (0.26) |
0.159 (0.224) |
1e-05 (4.46e-05) |
0.00077 (0.00207) |
0.286 (0.356) |
0.548 (0.611) |
3e-05 (0.000112) |
0.00013 (0.000416) |
0.0087 (0.0185) |
0.0846 (0.13) |
0.263 (0.333) |
0.0004 (0.00115) |
| del 6q22 31 | 252 (49%) | 264 |
0.269 (0.338) |
0.146 (0.208) |
0.00012 (0.000389) |
1e-05 (4.46e-05) |
0.0495 (0.0834) |
0.00345 (0.00797) |
0.175 (0.241) |
0.00074 (0.00201) |
0.796 (0.841) |
0.00099 (0.00261) |
0.492 (0.564) |
0.344 (0.416) |
| del 9p21 3 | 291 (56%) | 225 |
0.169 (0.234) |
0.313 (0.383) |
1e-05 (4.46e-05) |
0.0179 (0.0354) |
0.608 (0.671) |
0.0376 (0.067) |
0.114 (0.169) |
1e-05 (4.46e-05) |
0.19 (0.258) |
0.00178 (0.00439) |
0.0442 (0.0763) |
0.105 (0.158) |
| del 18q21 32 | 251 (49%) | 265 |
0.406 (0.482) |
0.0914 (0.14) |
1e-05 (4.46e-05) |
0.949 (0.967) |
0.0472 (0.0799) |
0.00057 (0.0016) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0202 (0.0393) |
0.113 (0.168) |
0.871 (0.902) |
0.063 (0.101) |
| del 1p13 1 | 149 (29%) | 367 |
0.342 (0.415) |
0.54 (0.606) |
1e-05 (4.46e-05) |
0.00031 (0.000907) |
0.0859 (0.132) |
0.0562 (0.0926) |
2e-05 (7.92e-05) |
5e-05 (0.000175) |
0.192 (0.26) |
0.00501 (0.0113) |
0.839 (0.882) |
0.776 (0.825) |
| del 2q22 1 | 46 (9%) | 470 |
0.869 (0.901) |
0.783 (0.832) |
0.00385 (0.00885) |
0.00242 (0.00584) |
0.157 (0.222) |
0.755 (0.806) |
0.0591 (0.0953) |
0.0163 (0.0325) |
0.0372 (0.0665) |
0.00769 (0.0166) |
0.856 (0.893) |
0.0884 (0.136) |
| del 3q29 | 135 (26%) | 381 |
0.609 (0.671) |
0.683 (0.747) |
0.00322 (0.00755) |
0.00153 (0.00387) |
0.103 (0.155) |
0.0309 (0.0562) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.785 (0.833) |
0.0657 (0.104) |
0.146 (0.208) |
0.247 (0.317) |
| del 9p23 | 285 (55%) | 231 |
0.167 (0.233) |
0.312 (0.383) |
1e-05 (4.46e-05) |
0.0408 (0.0712) |
0.877 (0.907) |
0.285 (0.356) |
0.0424 (0.0735) |
0.00026 (0.000771) |
0.168 (0.234) |
0.0257 (0.0476) |
0.287 (0.356) |
0.213 (0.283) |
| del 11q25 | 117 (23%) | 399 |
0.108 (0.161) |
0.481 (0.554) |
6e-05 (0.000207) |
0.00019 (0.000585) |
0.00414 (0.00949) |
0.146 (0.208) |
6e-05 (0.000207) |
0.00302 (0.00714) |
0.0678 (0.107) |
0.14 (0.202) |
0.099 (0.15) |
0.424 (0.5) |
| del 12q12 | 98 (19%) | 418 |
0.599 (0.663) |
0.75 (0.802) |
1e-05 (4.46e-05) |
0.0253 (0.0469) |
0.135 (0.197) |
0.0679 (0.107) |
0.0001 (0.00033) |
0.0447 (0.0766) |
0.0564 (0.0926) |
0.214 (0.283) |
0.9 (0.924) |
0.0261 (0.0481) |
| del 12q24 33 | 137 (27%) | 379 |
0.213 (0.283) |
0.201 (0.27) |
9e-05 (0.000299) |
0.216 (0.286) |
0.0204 (0.0396) |
0.321 (0.391) |
4e-05 (0.000145) |
5e-05 (0.000175) |
0.203 (0.272) |
0.0119 (0.0244) |
0.506 (0.579) |
0.5 (0.573) |
| del 14q32 12 | 144 (28%) | 372 |
0.704 (0.76) |
0.286 (0.356) |
1e-05 (4.46e-05) |
0.00337 (0.00786) |
0.377 (0.449) |
0.513 (0.585) |
0.257 (0.326) |
0.0117 (0.0241) |
0.00742 (0.0161) |
0.163 (0.228) |
0.046 (0.0784) |
0.0682 (0.107) |
| del xp22 2 | 143 (28%) | 373 |
0.691 (0.749) |
0.892 (0.92) |
1e-05 (4.46e-05) |
0.0163 (0.0325) |
0.131 (0.191) |
0.01 (0.0209) |
0.0112 (0.0232) |
5e-05 (0.000175) |
0.272 (0.342) |
0.514 (0.585) |
0.99 (1.00) |
0.0684 (0.107) |
| amp 1p22 3 | 141 (27%) | 375 |
1 (1.00) |
0.845 (0.886) |
1e-05 (4.46e-05) |
0.542 (0.607) |
0.0252 (0.0469) |
0.607 (0.671) |
0.0579 (0.0944) |
0.043 (0.0746) |
0.141 (0.203) |
0.0282 (0.0517) |
0.421 (0.498) |
0.179 (0.246) |
| amp 22q11 22 | 88 (17%) | 428 |
0.195 (0.264) |
0.147 (0.21) |
1e-05 (4.46e-05) |
0.441 (0.513) |
0.0196 (0.0384) |
0.257 (0.326) |
0.107 (0.16) |
0.0563 (0.0926) |
0.0579 (0.0944) |
0.0283 (0.0518) |
0.596 (0.662) |
0.0214 (0.0412) |
| del 3q11 1 | 140 (27%) | 376 |
0.608 (0.671) |
0.686 (0.748) |
0.0183 (0.0361) |
0.00631 (0.014) |
0.859 (0.895) |
0.771 (0.822) |
0.022 (0.042) |
0.0381 (0.0674) |
0.151 (0.214) |
0.741 (0.794) |
0.525 (0.591) |
0.841 (0.884) |
| del 6q26 | 257 (50%) | 259 |
0.454 (0.527) |
0.23 (0.3) |
0.00065 (0.00181) |
4e-05 (0.000145) |
0.0766 (0.12) |
0.0556 (0.092) |
0.201 (0.27) |
0.00626 (0.0139) |
0.938 (0.957) |
0.0186 (0.0367) |
0.518 (0.587) |
0.286 (0.356) |
| del 12p13 2 | 138 (27%) | 378 |
0.386 (0.46) |
1 (1.00) |
1e-05 (4.46e-05) |
0.0117 (0.0241) |
0.264 (0.333) |
0.114 (0.169) |
0.00016 (0.000502) |
0.00962 (0.0202) |
0.897 (0.922) |
0.979 (0.992) |
0.476 (0.549) |
0.112 (0.167) |
| del 8p11 21 | 123 (24%) | 393 |
0.802 (0.846) |
0.256 (0.326) |
1e-05 (4.46e-05) |
0.346 (0.418) |
0.861 (0.896) |
0.0377 (0.067) |
0.00252 (0.00605) |
0.167 (0.233) |
0.205 (0.274) |
0.689 (0.749) |
0.541 (0.607) |
0.129 (0.19) |
| del 20q13 12 | 80 (16%) | 436 |
0.0293 (0.0534) |
0.52 (0.587) |
0.517 (0.587) |
0.428 (0.504) |
0.166 (0.233) |
0.188 (0.257) |
0.128 (0.189) |
0.00426 (0.00968) |
0.157 (0.222) |
0.229 (0.299) |
0.0452 (0.0773) |
0.26 (0.329) |
| del 6q11 1 | 134 (26%) | 382 |
0.54 (0.606) |
1 (1.00) |
0.0461 (0.0784) |
0.00222 (0.00539) |
0.236 (0.305) |
0.774 (0.825) |
0.433 (0.508) |
0.728 (0.783) |
0.0785 (0.122) |
0.149 (0.212) |
0.69 (0.749) |
0.111 (0.166) |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S1. Gene #1: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 1(1P22.3) MUTATED | 17 | 45 | 10 | 69 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 52 | 183 | 69 | 71 |
Figure S1. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0252 (Fisher's exact test), Q value = 0.047
Table S2. Gene #1: 'amp_1p22.3' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 1(1P22.3) MUTATED | 15 | 27 | 11 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 29 | 46 | 53 |
Figure S2. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.043 (Fisher's exact test), Q value = 0.075
Table S3. Gene #1: 'amp_1p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 1(1P22.3) MUTATED | 20 | 34 | 38 | 8 | 12 | 13 | 15 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 58 | 76 | 59 | 40 | 41 | 36 | 62 |
Figure S3. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0282 (Fisher's exact test), Q value = 0.052
Table S4. Gene #1: 'amp_1p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 1(1P22.3) MUTATED | 15 | 52 | 33 | 39 |
| AMP PEAK 1(1P22.3) WILD-TYPE | 56 | 146 | 108 | 61 |
Figure S4. Get High-res Image Gene #1: 'amp_1p22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S5. Gene #2: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 2(1Q21.3) MUTATED | 63 | 140 | 58 | 111 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 6 | 88 | 21 | 29 |
Figure S5. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S6. Gene #2: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 2(1Q21.3) MUTATED | 80 | 124 | 127 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 64 | 25 | 35 |
Figure S6. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0239 (Fisher's exact test), Q value = 0.045
Table S7. Gene #2: 'amp_1q21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| AMP PEAK 2(1Q21.3) MUTATED | 30 | 30 | 32 | 18 | 27 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 10 | 3 | 13 | 13 | 5 |
Figure S7. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S8. Gene #2: 'amp_1q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 2(1Q21.3) MUTATED | 106 | 134 | 129 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 60 | 61 | 22 |
Figure S8. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
Table S9. Gene #2: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 2(1Q21.3) MUTATED | 54 | 74 | 69 | 45 | 45 | 38 | 44 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 24 | 36 | 28 | 3 | 8 | 11 | 33 |
Figure S9. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00416 (Fisher's exact test), Q value = 0.0095
Table S10. Gene #2: 'amp_1q21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 2(1Q21.3) MUTATED | 122 | 180 | 65 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 67 | 48 | 28 |
Figure S10. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00101 (Fisher's exact test), Q value = 0.0027
Table S11. Gene #2: 'amp_1q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 2(1Q21.3) MUTATED | 52 | 155 | 83 | 77 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 19 | 43 | 58 | 23 |
Figure S11. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00498 (Fisher's exact test), Q value = 0.011
Table S12. Gene #2: 'amp_1q21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 2(1Q21.3) MUTATED | 111 | 152 | 54 |
| AMP PEAK 2(1Q21.3) WILD-TYPE | 34 | 46 | 37 |
Figure S12. Get High-res Image Gene #2: 'amp_1q21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00024 (Fisher's exact test), Q value = 0.00072
Table S13. Gene #3: 'amp_3q26.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| AMP PEAK 3(3Q26.2) MUTATED | 0 | 6 | 0 | 4 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 5 | 3 | 12 | 2 |
Figure S13. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00178 (Fisher's exact test), Q value = 0.0044
Table S14. Gene #3: 'amp_3q26.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 3(3Q26.2) MUTATED | 0 | 6 | 4 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 14 | 5 | 3 |
Figure S14. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S15. Gene #3: 'amp_3q26.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 3(3Q26.2) MUTATED | 22 | 46 | 44 | 59 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 47 | 182 | 35 | 81 |
Figure S15. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S16. Gene #3: 'amp_3q26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 3(3Q26.2) MUTATED | 27 | 70 | 50 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 117 | 79 | 112 |
Figure S16. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0117 (Fisher's exact test), Q value = 0.024
Table S17. Gene #3: 'amp_3q26.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| AMP PEAK 3(3Q26.2) MUTATED | 14 | 3 | 19 | 13 | 10 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 26 | 30 | 26 | 18 | 22 |
Figure S17. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S18. Gene #3: 'amp_3q26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 3(3Q26.2) MUTATED | 26 | 92 | 53 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 140 | 103 | 98 |
Figure S18. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S19. Gene #3: 'amp_3q26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 3(3Q26.2) MUTATED | 8 | 39 | 65 | 5 | 17 | 19 | 18 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 70 | 71 | 32 | 43 | 36 | 30 | 59 |
Figure S19. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S20. Gene #3: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 3(3Q26.2) MUTATED | 41 | 103 | 25 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 148 | 125 | 68 |
Figure S20. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S21. Gene #3: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 3(3Q26.2) MUTATED | 12 | 67 | 36 | 54 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 59 | 131 | 105 | 46 |
Figure S21. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S22. Gene #3: 'amp_3q26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 3(3Q26.2) MUTATED | 15 | 101 | 26 |
| AMP PEAK 3(3Q26.2) WILD-TYPE | 88 | 147 | 57 |
Figure S22. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S23. Gene #4: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 4(5P15.33) MUTATED | 47 | 109 | 48 | 124 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 22 | 119 | 31 | 16 |
Figure S23. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00157 (Fisher's exact test), Q value = 0.004
Table S24. Gene #4: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 4(5P15.33) MUTATED | 76 | 108 | 108 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 68 | 41 | 54 |
Figure S24. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0403 (Fisher's exact test), Q value = 0.071
Table S25. Gene #4: 'amp_5p15.33' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 4(5P15.33) MUTATED | 26 | 57 | 39 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 18 | 16 | 25 |
Figure S25. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0424 (Fisher's exact test), Q value = 0.074
Table S26. Gene #4: 'amp_5p15.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| AMP PEAK 4(5P15.33) MUTATED | 30 | 19 | 35 | 15 | 23 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 10 | 14 | 10 | 16 | 9 |
Figure S26. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.0231 (Fisher's exact test), Q value = 0.044
Table S27. Gene #4: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 4(5P15.33) MUTATED | 96 | 138 | 91 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 70 | 57 | 60 |
Figure S27. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-04 (Fisher's exact test), Q value = 0.00061
Table S28. Gene #4: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 4(5P15.33) MUTATED | 48 | 76 | 77 | 22 | 35 | 30 | 37 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 30 | 34 | 20 | 26 | 18 | 19 | 40 |
Figure S28. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00142 (Fisher's exact test), Q value = 0.0036
Table S29. Gene #4: 'amp_5p15.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 4(5P15.33) MUTATED | 103 | 163 | 61 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 86 | 65 | 32 |
Figure S29. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00081 (Fisher's exact test), Q value = 0.0022
Table S30. Gene #4: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 4(5P15.33) MUTATED | 44 | 134 | 73 | 76 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 27 | 64 | 68 | 24 |
Figure S30. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S31. Gene #4: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 4(5P15.33) MUTATED | 42 | 187 | 56 |
| AMP PEAK 4(5P15.33) WILD-TYPE | 61 | 61 | 27 |
Figure S31. Get High-res Image Gene #4: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S32. Gene #5: 'amp_6p21.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 5(6P21.1) MUTATED | 43 | 61 | 28 | 58 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 26 | 167 | 51 | 82 |
Figure S32. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S33. Gene #5: 'amp_6p21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 5(6P21.1) MUTATED | 28 | 72 | 70 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 116 | 77 | 92 |
Figure S33. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00976 (Fisher's exact test), Q value = 0.02
Table S34. Gene #5: 'amp_6p21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 5(6P21.1) MUTATED | 26 | 35 | 44 | 24 | 25 | 17 | 18 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 52 | 75 | 53 | 24 | 28 | 32 | 59 |
Figure S34. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0352 (Fisher's exact test), Q value = 0.063
Table S35. Gene #5: 'amp_6p21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 5(6P21.1) MUTATED | 58 | 97 | 31 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 131 | 131 | 62 |
Figure S35. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00776 (Fisher's exact test), Q value = 0.017
Table S36. Gene #5: 'amp_6p21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 5(6P21.1) MUTATED | 21 | 85 | 38 | 42 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 50 | 113 | 103 | 58 |
Figure S36. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0285 (Fisher's exact test), Q value = 0.052
Table S37. Gene #5: 'amp_6p21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 5(6P21.1) MUTATED | 27 | 97 | 36 |
| AMP PEAK 5(6P21.1) WILD-TYPE | 76 | 151 | 47 |
Figure S37. Get High-res Image Gene #5: 'amp_6p21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S38. Gene #6: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 6(7P11.2) MUTATED | 26 | 87 | 46 | 113 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 43 | 141 | 33 | 27 |
Figure S38. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0347 (Fisher's exact test), Q value = 0.063
Table S39. Gene #6: 'amp_7p11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 6(7P11.2) MUTATED | 64 | 79 | 96 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 80 | 70 | 66 |
Figure S39. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00316 (Fisher's exact test), Q value = 0.0074
Table S40. Gene #6: 'amp_7p11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 6(7P11.2) MUTATED | 14 | 47 | 33 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 30 | 26 | 31 |
Figure S40. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0074 (Fisher's exact test), Q value = 0.016
Table S41. Gene #6: 'amp_7p11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| AMP PEAK 6(7P11.2) MUTATED | 24 | 13 | 32 | 13 | 12 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 16 | 20 | 13 | 18 | 20 |
Figure S41. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S42. Gene #6: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 6(7P11.2) MUTATED | 75 | 135 | 58 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 91 | 60 | 93 |
Figure S42. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S43. Gene #6: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 6(7P11.2) MUTATED | 31 | 81 | 57 | 9 | 24 | 32 | 34 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 47 | 29 | 40 | 39 | 29 | 17 | 43 |
Figure S43. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S44. Gene #6: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 6(7P11.2) MUTATED | 71 | 133 | 64 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 118 | 95 | 29 |
Figure S44. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S45. Gene #6: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 6(7P11.2) MUTATED | 22 | 126 | 63 | 57 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 49 | 72 | 78 | 43 |
Figure S45. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S46. Gene #6: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 6(7P11.2) MUTATED | 61 | 107 | 65 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 84 | 91 | 26 |
Figure S46. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S47. Gene #6: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 6(7P11.2) MUTATED | 31 | 153 | 49 |
| AMP PEAK 6(7P11.2) WILD-TYPE | 72 | 95 | 34 |
Figure S47. Get High-res Image Gene #6: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S48. Gene #7: 'amp_7q31.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 7(7Q31.2) MUTATED | 19 | 67 | 30 | 98 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 50 | 161 | 49 | 42 |
Figure S48. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S49. Gene #7: 'amp_7q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 7(7Q31.2) MUTATED | 55 | 106 | 49 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 111 | 89 | 102 |
Figure S49. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S50. Gene #7: 'amp_7q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 7(7Q31.2) MUTATED | 22 | 71 | 46 | 5 | 16 | 22 | 28 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 56 | 39 | 51 | 43 | 37 | 27 | 49 |
Figure S50. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00121 (Fisher's exact test), Q value = 0.0031
Table S51. Gene #7: 'amp_7q31.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 7(7Q31.2) MUTATED | 59 | 103 | 48 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 130 | 125 | 45 |
Figure S51. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00161 (Fisher's exact test), Q value = 0.004
Table S52. Gene #7: 'amp_7q31.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 7(7Q31.2) MUTATED | 18 | 97 | 50 | 45 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 53 | 101 | 91 | 55 |
Figure S52. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S53. Gene #7: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 7(7Q31.2) MUTATED | 22 | 123 | 37 |
| AMP PEAK 7(7Q31.2) WILD-TYPE | 81 | 125 | 46 |
Figure S53. Get High-res Image Gene #7: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S54. Gene #8: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 8(8P11.21) MUTATED | 55 | 43 | 30 | 45 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 14 | 185 | 49 | 95 |
Figure S54. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S55. Gene #8: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 8(8P11.21) MUTATED | 27 | 69 | 57 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 117 | 80 | 105 |
Figure S55. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S56. Gene #8: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 8(8P11.21) MUTATED | 32 | 67 | 71 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 134 | 128 | 80 |
Figure S56. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S57. Gene #8: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 8(8P11.21) MUTATED | 17 | 37 | 39 | 15 | 32 | 18 | 12 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 61 | 73 | 58 | 33 | 21 | 31 | 65 |
Figure S57. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00042 (Fisher's exact test), Q value = 0.0012
Table S58. Gene #8: 'amp_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 8(8P11.21) MUTATED | 45 | 96 | 30 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 144 | 132 | 63 |
Figure S58. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00036
Table S59. Gene #8: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 8(8P11.21) MUTATED | 18 | 74 | 31 | 48 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 53 | 124 | 110 | 52 |
Figure S59. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0131 (Fisher's exact test), Q value = 0.026
Table S60. Gene #8: 'amp_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 8(8P11.21) MUTATED | 36 | 79 | 32 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 109 | 119 | 59 |
Figure S60. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00021 (Fisher's exact test), Q value = 0.00064
Table S61. Gene #8: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 8(8P11.21) MUTATED | 19 | 101 | 27 |
| AMP PEAK 8(8P11.21) WILD-TYPE | 84 | 147 | 56 |
Figure S61. Get High-res Image Gene #8: 'amp_8p11.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0073 (Fisher's exact test), Q value = 0.016
Table S62. Gene #9: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| AMP PEAK 9(8Q24.21) MUTATED | 5 | 7 | 3 | 5 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 0 | 2 | 9 | 1 |
Figure S62. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0264 (Fisher's exact test), Q value = 0.049
Table S63. Gene #9: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 9(8Q24.21) MUTATED | 5 | 9 | 6 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 9 | 2 | 1 |
Figure S63. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S64. Gene #9: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 9(8Q24.21) MUTATED | 66 | 94 | 53 | 109 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 3 | 134 | 26 | 31 |
Figure S64. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S65. Gene #9: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 9(8Q24.21) MUTATED | 63 | 101 | 117 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 81 | 48 | 45 |
Figure S65. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S66. Gene #9: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 9(8Q24.21) MUTATED | 76 | 136 | 106 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 90 | 59 | 45 |
Figure S66. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S67. Gene #9: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 9(8Q24.21) MUTATED | 39 | 77 | 67 | 28 | 47 | 31 | 29 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 39 | 33 | 30 | 20 | 6 | 18 | 48 |
Figure S67. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S68. Gene #9: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 9(8Q24.21) MUTATED | 89 | 167 | 62 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 100 | 61 | 31 |
Figure S68. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 5e-04
Table S69. Gene #9: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 9(8Q24.21) MUTATED | 36 | 139 | 72 | 71 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 35 | 59 | 69 | 29 |
Figure S69. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0463 (Fisher's exact test), Q value = 0.079
Table S70. Gene #9: 'amp_8q24.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 9(8Q24.21) MUTATED | 78 | 132 | 58 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 67 | 66 | 33 |
Figure S70. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S71. Gene #9: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 9(8Q24.21) MUTATED | 42 | 175 | 51 |
| AMP PEAK 9(8Q24.21) WILD-TYPE | 61 | 73 | 32 |
Figure S71. Get High-res Image Gene #9: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00116 (Fisher's exact test), Q value = 0.003
Table S72. Gene #10: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| AMP PEAK 10(11Q13.3) MUTATED | 2 | 1 | 2 | 6 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 3 | 8 | 10 | 0 |
Figure S72. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00039
Table S73. Gene #10: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 10(11Q13.3) MUTATED | 3 | 1 | 7 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 11 | 10 | 0 |
Figure S73. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S74. Gene #10: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 10(11Q13.3) MUTATED | 36 | 32 | 29 | 73 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 33 | 196 | 50 | 67 |
Figure S74. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S75. Gene #10: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 10(11Q13.3) MUTATED | 27 | 56 | 66 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 117 | 93 | 96 |
Figure S75. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0461 (Fisher's exact test), Q value = 0.078
Table S76. Gene #10: 'amp_11q13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 10(11Q13.3) MUTATED | 8 | 27 | 25 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 36 | 46 | 39 |
Figure S76. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00047
Table S77. Gene #10: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 10(11Q13.3) MUTATED | 35 | 70 | 65 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 131 | 125 | 86 |
Figure S77. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S78. Gene #10: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 10(11Q13.3) MUTATED | 20 | 43 | 38 | 4 | 35 | 16 | 14 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 58 | 67 | 59 | 44 | 18 | 33 | 63 |
Figure S78. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S79. Gene #10: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 10(11Q13.3) MUTATED | 35 | 102 | 30 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 154 | 126 | 63 |
Figure S79. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S80. Gene #10: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 10(11Q13.3) MUTATED | 10 | 81 | 29 | 47 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 61 | 117 | 112 | 53 |
Figure S80. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00024 (Fisher's exact test), Q value = 0.00072
Table S81. Gene #10: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 10(11Q13.3) MUTATED | 18 | 98 | 29 |
| AMP PEAK 10(11Q13.3) WILD-TYPE | 85 | 150 | 54 |
Figure S81. Get High-res Image Gene #10: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0381 (Fisher's exact test), Q value = 0.067
Table S82. Gene #11: 'amp_12p12.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 11(12P12.1) MUTATED | 2 | 3 | 5 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 12 | 8 | 2 |
Figure S82. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S83. Gene #11: 'amp_12p12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 11(12P12.1) MUTATED | 26 | 45 | 62 | 46 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 43 | 183 | 17 | 94 |
Figure S83. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00284 (Fisher's exact test), Q value = 0.0068
Table S84. Gene #11: 'amp_12p12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 11(12P12.1) MUTATED | 33 | 61 | 59 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 111 | 88 | 103 |
Figure S84. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.039 (Fisher's exact test), Q value = 0.069
Table S85. Gene #11: 'amp_12p12.1' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 11(12P12.1) MUTATED | 7 | 27 | 22 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 37 | 46 | 42 |
Figure S85. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S86. Gene #11: 'amp_12p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 11(12P12.1) MUTATED | 31 | 83 | 65 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 135 | 112 | 86 |
Figure S86. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S87. Gene #11: 'amp_12p12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 11(12P12.1) MUTATED | 12 | 43 | 35 | 5 | 33 | 30 | 21 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 66 | 67 | 62 | 43 | 20 | 19 | 56 |
Figure S87. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S88. Gene #11: 'amp_12p12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 11(12P12.1) MUTATED | 44 | 103 | 29 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 145 | 125 | 64 |
Figure S88. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S89. Gene #11: 'amp_12p12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 11(12P12.1) MUTATED | 13 | 81 | 35 | 47 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 58 | 117 | 106 | 53 |
Figure S89. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S90. Gene #11: 'amp_12p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 11(12P12.1) MUTATED | 17 | 107 | 25 |
| AMP PEAK 11(12P12.1) WILD-TYPE | 86 | 141 | 58 |
Figure S90. Get High-res Image Gene #11: 'amp_12p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S91. Gene #12: 'amp_12q14.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 12(12Q14.1) MUTATED | 30 | 42 | 64 | 32 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 39 | 186 | 15 | 108 |
Figure S91. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00047
Table S92. Gene #12: 'amp_12q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 12(12Q14.1) MUTATED | 32 | 67 | 48 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 112 | 82 | 114 |
Figure S92. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S93. Gene #12: 'amp_12q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 12(12Q14.1) MUTATED | 24 | 72 | 72 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 142 | 123 | 79 |
Figure S93. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S94. Gene #12: 'amp_12q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 12(12Q14.1) MUTATED | 13 | 31 | 37 | 6 | 37 | 31 | 13 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 65 | 79 | 60 | 42 | 16 | 18 | 64 |
Figure S94. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S95. Gene #12: 'amp_12q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 12(12Q14.1) MUTATED | 34 | 105 | 27 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 155 | 123 | 66 |
Figure S95. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S96. Gene #12: 'amp_12q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 12(12Q14.1) MUTATED | 12 | 78 | 25 | 51 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 59 | 120 | 116 | 49 |
Figure S96. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S97. Gene #12: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 12(12Q14.1) MUTATED | 11 | 108 | 24 |
| AMP PEAK 12(12Q14.1) WILD-TYPE | 92 | 140 | 59 |
Figure S97. Get High-res Image Gene #12: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S98. Gene #13: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 13(12Q15) MUTATED | 30 | 44 | 63 | 34 |
| AMP PEAK 13(12Q15) WILD-TYPE | 39 | 184 | 16 | 106 |
Figure S98. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S99. Gene #13: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 13(12Q15) MUTATED | 31 | 69 | 50 |
| AMP PEAK 13(12Q15) WILD-TYPE | 113 | 80 | 112 |
Figure S99. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S100. Gene #13: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 13(12Q15) MUTATED | 31 | 66 | 74 |
| AMP PEAK 13(12Q15) WILD-TYPE | 135 | 129 | 77 |
Figure S100. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S101. Gene #13: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 13(12Q15) MUTATED | 17 | 28 | 37 | 6 | 37 | 31 | 15 |
| AMP PEAK 13(12Q15) WILD-TYPE | 61 | 82 | 60 | 42 | 16 | 18 | 62 |
Figure S101. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S102. Gene #13: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 13(12Q15) MUTATED | 37 | 108 | 25 |
| AMP PEAK 13(12Q15) WILD-TYPE | 152 | 120 | 68 |
Figure S102. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S103. Gene #13: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 13(12Q15) MUTATED | 11 | 76 | 31 | 52 |
| AMP PEAK 13(12Q15) WILD-TYPE | 60 | 122 | 110 | 48 |
Figure S103. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S104. Gene #13: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 13(12Q15) MUTATED | 14 | 106 | 26 |
| AMP PEAK 13(12Q15) WILD-TYPE | 89 | 142 | 57 |
Figure S104. Get High-res Image Gene #13: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S105. Gene #14: 'amp_14q13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 14(14Q13.3) MUTATED | 52 | 64 | 35 | 78 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 17 | 164 | 44 | 62 |
Figure S105. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S106. Gene #14: 'amp_14q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 14(14Q13.3) MUTATED | 42 | 80 | 79 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 102 | 69 | 83 |
Figure S106. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00072 (Fisher's exact test), Q value = 0.002
Table S107. Gene #14: 'amp_14q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 14(14Q13.3) MUTATED | 54 | 100 | 74 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 112 | 95 | 77 |
Figure S107. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S108. Gene #14: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 14(14Q13.3) MUTATED | 34 | 57 | 63 | 9 | 42 | 8 | 15 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 44 | 53 | 34 | 39 | 11 | 41 | 62 |
Figure S108. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S109. Gene #14: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 14(14Q13.3) MUTATED | 54 | 125 | 46 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 135 | 103 | 47 |
Figure S109. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S110. Gene #14: 'amp_14q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 14(14Q13.3) MUTATED | 27 | 111 | 34 | 53 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 44 | 87 | 107 | 47 |
Figure S110. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S111. Gene #14: 'amp_14q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 14(14Q13.3) MUTATED | 27 | 125 | 41 |
| AMP PEAK 14(14Q13.3) WILD-TYPE | 76 | 123 | 42 |
Figure S111. Get High-res Image Gene #14: 'amp_14q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0474 (Fisher's exact test), Q value = 0.08
Table S112. Gene #15: 'amp_17q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 15(17Q12) MUTATED | 4 | 6 | 6 |
| AMP PEAK 15(17Q12) WILD-TYPE | 10 | 5 | 1 |
Figure S112. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S113. Gene #15: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 15(17Q12) MUTATED | 38 | 52 | 42 | 94 |
| AMP PEAK 15(17Q12) WILD-TYPE | 31 | 176 | 37 | 46 |
Figure S113. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S114. Gene #15: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 15(17Q12) MUTATED | 31 | 73 | 88 |
| AMP PEAK 15(17Q12) WILD-TYPE | 113 | 76 | 74 |
Figure S114. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0171 (Fisher's exact test), Q value = 0.034
Table S115. Gene #15: 'amp_17q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| AMP PEAK 15(17Q12) MUTATED | 23 | 11 | 26 | 11 | 9 |
| AMP PEAK 15(17Q12) WILD-TYPE | 17 | 22 | 19 | 20 | 23 |
Figure S115. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S116. Gene #15: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 15(17Q12) MUTATED | 52 | 111 | 62 |
| AMP PEAK 15(17Q12) WILD-TYPE | 114 | 84 | 89 |
Figure S116. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S117. Gene #15: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 15(17Q12) MUTATED | 30 | 62 | 57 | 8 | 29 | 17 | 22 |
| AMP PEAK 15(17Q12) WILD-TYPE | 48 | 48 | 40 | 40 | 24 | 32 | 55 |
Figure S117. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S118. Gene #15: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 15(17Q12) MUTATED | 58 | 129 | 37 |
| AMP PEAK 15(17Q12) WILD-TYPE | 131 | 99 | 56 |
Figure S118. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S119. Gene #15: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 15(17Q12) MUTATED | 21 | 102 | 40 | 61 |
| AMP PEAK 15(17Q12) WILD-TYPE | 50 | 96 | 101 | 39 |
Figure S119. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S120. Gene #15: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 15(17Q12) MUTATED | 24 | 125 | 38 |
| AMP PEAK 15(17Q12) WILD-TYPE | 79 | 123 | 45 |
Figure S120. Get High-res Image Gene #15: 'amp_17q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S121. Gene #16: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 16(17Q23.1) MUTATED | 35 | 67 | 47 | 100 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 34 | 161 | 32 | 40 |
Figure S121. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S122. Gene #16: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 16(17Q23.1) MUTATED | 40 | 73 | 100 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 104 | 76 | 62 |
Figure S122. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S123. Gene #16: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 16(17Q23.1) MUTATED | 62 | 127 | 59 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 104 | 68 | 92 |
Figure S123. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S124. Gene #16: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 16(17Q23.1) MUTATED | 36 | 74 | 55 | 7 | 29 | 22 | 25 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 42 | 36 | 42 | 41 | 24 | 27 | 52 |
Figure S124. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S125. Gene #16: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 16(17Q23.1) MUTATED | 68 | 136 | 43 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 121 | 92 | 50 |
Figure S125. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S126. Gene #16: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 16(17Q23.1) MUTATED | 26 | 111 | 48 | 62 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 45 | 87 | 93 | 38 |
Figure S126. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S127. Gene #16: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 16(17Q23.1) MUTATED | 28 | 134 | 43 |
| AMP PEAK 16(17Q23.1) WILD-TYPE | 75 | 114 | 40 |
Figure S127. Get High-res Image Gene #16: 'amp_17q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.02 (Fisher's exact test), Q value = 0.039
Table S128. Gene #17: 'amp_18q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 17(18Q11.2) MUTATED | 1 | 1 | 4 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 13 | 10 | 3 |
Figure S128. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S129. Gene #17: 'amp_18q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 17(18Q11.2) MUTATED | 22 | 26 | 24 | 31 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 47 | 202 | 55 | 109 |
Figure S129. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S130. Gene #17: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 17(18Q11.2) MUTATED | 11 | 51 | 31 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 133 | 98 | 131 |
Figure S130. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S131. Gene #17: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 17(18Q11.2) MUTATED | 17 | 41 | 44 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 149 | 154 | 107 |
Figure S131. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00021
Table S132. Gene #17: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 17(18Q11.2) MUTATED | 7 | 17 | 30 | 7 | 22 | 9 | 10 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 71 | 93 | 67 | 41 | 31 | 40 | 67 |
Figure S132. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
Table S133. Gene #17: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 17(18Q11.2) MUTATED | 20 | 62 | 20 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 169 | 166 | 73 |
Figure S133. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S134. Gene #17: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 17(18Q11.2) MUTATED | 6 | 43 | 18 | 35 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 65 | 155 | 123 | 65 |
Figure S134. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S135. Gene #17: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 17(18Q11.2) MUTATED | 9 | 70 | 12 |
| AMP PEAK 17(18Q11.2) WILD-TYPE | 94 | 178 | 71 |
Figure S135. Get High-res Image Gene #17: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0416 (Fisher's exact test), Q value = 0.073
Table S136. Gene #18: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 18(19Q12) MUTATED | 0 | 4 | 2 |
| AMP PEAK 18(19Q12) WILD-TYPE | 14 | 7 | 5 |
Figure S136. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S137. Gene #18: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 18(19Q12) MUTATED | 22 | 34 | 41 | 40 |
| AMP PEAK 18(19Q12) WILD-TYPE | 47 | 194 | 38 | 100 |
Figure S137. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S138. Gene #18: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 18(19Q12) MUTATED | 26 | 63 | 35 |
| AMP PEAK 18(19Q12) WILD-TYPE | 118 | 86 | 127 |
Figure S138. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S139. Gene #18: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 18(19Q12) MUTATED | 19 | 62 | 54 |
| AMP PEAK 18(19Q12) WILD-TYPE | 147 | 133 | 97 |
Figure S139. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S140. Gene #18: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 18(19Q12) MUTATED | 8 | 30 | 36 | 13 | 17 | 21 | 10 |
| AMP PEAK 18(19Q12) WILD-TYPE | 70 | 80 | 61 | 35 | 36 | 28 | 67 |
Figure S140. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S141. Gene #18: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 18(19Q12) MUTATED | 30 | 85 | 22 |
| AMP PEAK 18(19Q12) WILD-TYPE | 159 | 143 | 71 |
Figure S141. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.00059
Table S142. Gene #18: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 18(19Q12) MUTATED | 14 | 60 | 23 | 40 |
| AMP PEAK 18(19Q12) WILD-TYPE | 57 | 138 | 118 | 60 |
Figure S142. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0446 (Fisher's exact test), Q value = 0.077
Table S143. Gene #18: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 18(19Q12) MUTATED | 31 | 66 | 23 |
| AMP PEAK 18(19Q12) WILD-TYPE | 114 | 132 | 68 |
Figure S143. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00014 (Fisher's exact test), Q value = 0.00045
Table S144. Gene #18: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 18(19Q12) MUTATED | 19 | 88 | 13 |
| AMP PEAK 18(19Q12) WILD-TYPE | 84 | 160 | 70 |
Figure S144. Get High-res Image Gene #18: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00314 (Fisher's exact test), Q value = 0.0074
Table S145. Gene #19: 'amp_20q13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| AMP PEAK 19(20Q13.33) MUTATED | 2 | 2 | 2 | 6 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 3 | 7 | 10 | 0 |
Figure S145. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0149 (Fisher's exact test), Q value = 0.03
Table S146. Gene #19: 'amp_20q13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| AMP PEAK 19(20Q13.33) MUTATED | 3 | 3 | 6 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 11 | 8 | 1 |
Figure S146. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S147. Gene #19: 'amp_20q13.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 19(20Q13.33) MUTATED | 45 | 69 | 47 | 83 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 24 | 159 | 32 | 57 |
Figure S147. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S148. Gene #19: 'amp_20q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 19(20Q13.33) MUTATED | 48 | 90 | 75 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 96 | 59 | 87 |
Figure S148. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00161 (Fisher's exact test), Q value = 0.004
Table S149. Gene #19: 'amp_20q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 19(20Q13.33) MUTATED | 60 | 97 | 84 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 106 | 98 | 67 |
Figure S149. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S150. Gene #19: 'amp_20q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 19(20Q13.33) MUTATED | 27 | 48 | 67 | 22 | 38 | 18 | 21 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 51 | 62 | 30 | 26 | 15 | 31 | 56 |
Figure S150. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S151. Gene #19: 'amp_20q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 19(20Q13.33) MUTATED | 65 | 135 | 40 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 124 | 93 | 53 |
Figure S151. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S152. Gene #19: 'amp_20q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 19(20Q13.33) MUTATED | 23 | 104 | 50 | 63 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 48 | 94 | 91 | 37 |
Figure S152. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0232 (Fisher's exact test), Q value = 0.044
Table S153. Gene #19: 'amp_20q13.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| AMP PEAK 19(20Q13.33) MUTATED | 56 | 106 | 42 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 89 | 92 | 49 |
Figure S153. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S154. Gene #19: 'amp_20q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 19(20Q13.33) MUTATED | 29 | 139 | 36 |
| AMP PEAK 19(20Q13.33) WILD-TYPE | 74 | 109 | 47 |
Figure S154. Get High-res Image Gene #19: 'amp_20q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S155. Gene #20: 'amp_22q11.22' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 20(22Q11.22) MUTATED | 7 | 22 | 17 | 42 |
| AMP PEAK 20(22Q11.22) WILD-TYPE | 62 | 206 | 62 | 98 |
Figure S155. Get High-res Image Gene #20: 'amp_22q11.22' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0196 (Fisher's exact test), Q value = 0.038
Table S156. Gene #20: 'amp_22q11.22' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| AMP PEAK 20(22Q11.22) MUTATED | 3 | 20 | 14 |
| AMP PEAK 20(22Q11.22) WILD-TYPE | 41 | 53 | 50 |
Figure S156. Get High-res Image Gene #20: 'amp_22q11.22' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0283 (Fisher's exact test), Q value = 0.052
Table S157. Gene #20: 'amp_22q11.22' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| AMP PEAK 20(22Q11.22) MUTATED | 11 | 33 | 17 | 27 |
| AMP PEAK 20(22Q11.22) WILD-TYPE | 60 | 165 | 124 | 73 |
Figure S157. Get High-res Image Gene #20: 'amp_22q11.22' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0214 (Fisher's exact test), Q value = 0.041
Table S158. Gene #20: 'amp_22q11.22' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 20(22Q11.22) MUTATED | 10 | 54 | 13 |
| AMP PEAK 20(22Q11.22) WILD-TYPE | 93 | 194 | 70 |
Figure S158. Get High-res Image Gene #20: 'amp_22q11.22' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S159. Gene #21: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| AMP PEAK 21(XQ28) MUTATED | 24 | 37 | 26 | 70 |
| AMP PEAK 21(XQ28) WILD-TYPE | 45 | 191 | 53 | 70 |
Figure S159. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00077 (Fisher's exact test), Q value = 0.0021
Table S160. Gene #21: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| AMP PEAK 21(XQ28) MUTATED | 27 | 45 | 62 |
| AMP PEAK 21(XQ28) WILD-TYPE | 117 | 104 | 100 |
Figure S160. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S161. Gene #21: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| AMP PEAK 21(XQ28) MUTATED | 37 | 83 | 36 |
| AMP PEAK 21(XQ28) WILD-TYPE | 129 | 112 | 115 |
Figure S161. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S162. Gene #21: 'amp_xq28' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| AMP PEAK 21(XQ28) MUTATED | 20 | 49 | 38 | 6 | 14 | 14 | 15 |
| AMP PEAK 21(XQ28) WILD-TYPE | 58 | 61 | 59 | 42 | 39 | 35 | 62 |
Figure S162. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0087 (Fisher's exact test), Q value = 0.018
Table S163. Gene #21: 'amp_xq28' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| AMP PEAK 21(XQ28) MUTATED | 43 | 74 | 37 |
| AMP PEAK 21(XQ28) WILD-TYPE | 146 | 154 | 56 |
Figure S163. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4e-04 (Fisher's exact test), Q value = 0.0012
Table S164. Gene #21: 'amp_xq28' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| AMP PEAK 21(XQ28) MUTATED | 15 | 85 | 30 |
| AMP PEAK 21(XQ28) WILD-TYPE | 88 | 163 | 53 |
Figure S164. Get High-res Image Gene #21: 'amp_xq28' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S165. Gene #22: 'del_1p36.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 1(1P36.11) MUTATED | 31 | 45 | 29 | 20 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 38 | 183 | 50 | 120 |
Figure S165. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S166. Gene #22: 'del_1p36.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 1(1P36.11) MUTATED | 14 | 45 | 48 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 130 | 104 | 114 |
Figure S166. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S167. Gene #22: 'del_1p36.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 1(1P36.11) MUTATED | 18 | 49 | 55 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 148 | 146 | 96 |
Figure S167. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S168. Gene #22: 'del_1p36.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 1(1P36.11) MUTATED | 11 | 27 | 20 | 11 | 26 | 21 | 6 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 67 | 83 | 77 | 37 | 27 | 28 | 71 |
Figure S168. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0248 (Fisher's exact test), Q value = 0.046
Table S169. Gene #22: 'del_1p36.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 1(1P36.11) MUTATED | 38 | 67 | 16 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 151 | 161 | 77 |
Figure S169. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0174 (Fisher's exact test), Q value = 0.035
Table S170. Gene #22: 'del_1p36.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 1(1P36.11) MUTATED | 33 | 56 | 12 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 112 | 142 | 79 |
Figure S170. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00854 (Fisher's exact test), Q value = 0.018
Table S171. Gene #22: 'del_1p36.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 1(1P36.11) MUTATED | 18 | 71 | 12 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 85 | 177 | 71 |
Figure S171. Get High-res Image Gene #22: 'del_1p36.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S172. Gene #23: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 2(1P13.1) MUTATED | 35 | 46 | 36 | 32 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 34 | 182 | 43 | 108 |
Figure S172. Get High-res Image Gene #23: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00031 (Fisher's exact test), Q value = 0.00091
Table S173. Gene #23: 'del_1p13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 2(1P13.1) MUTATED | 22 | 51 | 50 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 122 | 98 | 112 |
Figure S173. Get High-res Image Gene #23: 'del_1p13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S174. Gene #23: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 2(1P13.1) MUTATED | 34 | 47 | 66 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 132 | 148 | 85 |
Figure S174. Get High-res Image Gene #23: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S175. Gene #23: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 2(1P13.1) MUTATED | 21 | 26 | 27 | 20 | 27 | 17 | 9 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 57 | 84 | 70 | 28 | 26 | 32 | 68 |
Figure S175. Get High-res Image Gene #23: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00501 (Fisher's exact test), Q value = 0.011
Table S176. Gene #23: 'del_1p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 2(1P13.1) MUTATED | 15 | 73 | 29 | 29 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 56 | 125 | 112 | 71 |
Figure S176. Get High-res Image Gene #23: 'del_1p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00385 (Fisher's exact test), Q value = 0.0088
Table S177. Gene #24: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 3(2Q22.1) MUTATED | 10 | 10 | 12 | 14 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 59 | 218 | 67 | 126 |
Figure S177. Get High-res Image Gene #24: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00242 (Fisher's exact test), Q value = 0.0058
Table S178. Gene #24: 'del_2q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 3(2Q22.1) MUTATED | 5 | 22 | 13 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 139 | 127 | 149 |
Figure S178. Get High-res Image Gene #24: 'del_2q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0163 (Fisher's exact test), Q value = 0.032
Table S179. Gene #24: 'del_2q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 3(2Q22.1) MUTATED | 6 | 8 | 10 | 2 | 8 | 10 | 2 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 72 | 102 | 87 | 46 | 45 | 39 | 75 |
Figure S179. Get High-res Image Gene #24: 'del_2q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0372 (Fisher's exact test), Q value = 0.066
Table S180. Gene #24: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 3(2Q22.1) MUTATED | 9 | 26 | 10 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 180 | 202 | 83 |
Figure S180. Get High-res Image Gene #24: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00769 (Fisher's exact test), Q value = 0.017
Table S181. Gene #24: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 3(2Q22.1) MUTATED | 3 | 18 | 7 | 17 |
| DEL PEAK 3(2Q22.1) WILD-TYPE | 68 | 180 | 134 | 83 |
Figure S181. Get High-res Image Gene #24: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S182. Gene #25: 'del_3p26.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 4(3P26.2) MUTATED | 40 | 76 | 45 | 75 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 29 | 152 | 34 | 65 |
Figure S182. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00039
Table S183. Gene #25: 'del_3p26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 4(3P26.2) MUTATED | 51 | 88 | 68 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 93 | 61 | 94 |
Figure S183. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0357 (Fisher's exact test), Q value = 0.064
Table S184. Gene #25: 'del_3p26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 4(3P26.2) MUTATED | 62 | 95 | 76 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 104 | 100 | 75 |
Figure S184. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S185. Gene #25: 'del_3p26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 4(3P26.2) MUTATED | 31 | 40 | 66 | 15 | 35 | 26 | 20 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 47 | 70 | 31 | 33 | 18 | 23 | 57 |
Figure S185. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S186. Gene #25: 'del_3p26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 4(3P26.2) MUTATED | 62 | 115 | 54 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 127 | 113 | 39 |
Figure S186. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00022 (Fisher's exact test), Q value = 0.00067
Table S187. Gene #25: 'del_3p26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 4(3P26.2) MUTATED | 29 | 86 | 52 | 64 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 42 | 112 | 89 | 36 |
Figure S187. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S188. Gene #25: 'del_3p26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 4(3P26.2) MUTATED | 31 | 131 | 38 |
| DEL PEAK 4(3P26.2) WILD-TYPE | 72 | 117 | 45 |
Figure S188. Get High-res Image Gene #25: 'del_3p26.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S189. Gene #26: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 5(3P21.31) MUTATED | 42 | 74 | 50 | 80 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 27 | 154 | 29 | 60 |
Figure S189. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S190. Gene #26: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 5(3P21.31) MUTATED | 44 | 101 | 71 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 100 | 48 | 91 |
Figure S190. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0323 (Fisher's exact test), Q value = 0.058
Table S191. Gene #26: 'del_3p21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 5(3P21.31) MUTATED | 15 | 34 | 38 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 29 | 39 | 26 |
Figure S191. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0017 (Fisher's exact test), Q value = 0.0042
Table S192. Gene #26: 'del_3p21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 5(3P21.31) MUTATED | 60 | 100 | 82 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 106 | 95 | 69 |
Figure S192. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S193. Gene #26: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 5(3P21.31) MUTATED | 28 | 44 | 70 | 15 | 37 | 29 | 19 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 50 | 66 | 27 | 33 | 16 | 20 | 58 |
Figure S193. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S194. Gene #26: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 5(3P21.31) MUTATED | 64 | 125 | 52 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 125 | 103 | 41 |
Figure S194. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S195. Gene #26: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 5(3P21.31) MUTATED | 31 | 93 | 48 | 69 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 40 | 105 | 93 | 31 |
Figure S195. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S196. Gene #26: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 5(3P21.31) MUTATED | 31 | 140 | 39 |
| DEL PEAK 5(3P21.31) WILD-TYPE | 72 | 108 | 44 |
Figure S196. Get High-res Image Gene #26: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0183 (Fisher's exact test), Q value = 0.036
Table S197. Gene #27: 'del_3q11.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 6(3Q11.1) MUTATED | 29 | 54 | 17 | 40 |
| DEL PEAK 6(3Q11.1) WILD-TYPE | 40 | 174 | 62 | 100 |
Figure S197. Get High-res Image Gene #27: 'del_3q11.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00631 (Fisher's exact test), Q value = 0.014
Table S198. Gene #27: 'del_3q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 6(3Q11.1) MUTATED | 29 | 55 | 47 |
| DEL PEAK 6(3Q11.1) WILD-TYPE | 115 | 94 | 115 |
Figure S198. Get High-res Image Gene #27: 'del_3q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.022 (Fisher's exact test), Q value = 0.042
Table S199. Gene #27: 'del_3q11.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 6(3Q11.1) MUTATED | 45 | 41 | 52 |
| DEL PEAK 6(3Q11.1) WILD-TYPE | 121 | 154 | 99 |
Figure S199. Get High-res Image Gene #27: 'del_3q11.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0381 (Fisher's exact test), Q value = 0.067
Table S200. Gene #27: 'del_3q11.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 6(3Q11.1) MUTATED | 20 | 25 | 23 | 17 | 22 | 17 | 14 |
| DEL PEAK 6(3Q11.1) WILD-TYPE | 58 | 85 | 74 | 31 | 31 | 32 | 63 |
Figure S200. Get High-res Image Gene #27: 'del_3q11.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00322 (Fisher's exact test), Q value = 0.0076
Table S201. Gene #28: 'del_3q29' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 7(3Q29) MUTATED | 31 | 50 | 20 | 34 |
| DEL PEAK 7(3Q29) WILD-TYPE | 38 | 178 | 59 | 106 |
Figure S201. Get High-res Image Gene #28: 'del_3q29' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00153 (Fisher's exact test), Q value = 0.0039
Table S202. Gene #28: 'del_3q29' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 7(3Q29) MUTATED | 24 | 51 | 49 |
| DEL PEAK 7(3Q29) WILD-TYPE | 120 | 98 | 113 |
Figure S202. Get High-res Image Gene #28: 'del_3q29' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0309 (Fisher's exact test), Q value = 0.056
Table S203. Gene #28: 'del_3q29' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 7(3Q29) MUTATED | 13 | 13 | 8 | 6 | 15 |
| DEL PEAK 7(3Q29) WILD-TYPE | 27 | 20 | 37 | 25 | 17 |
Figure S203. Get High-res Image Gene #28: 'del_3q29' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S204. Gene #28: 'del_3q29' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 7(3Q29) MUTATED | 44 | 27 | 61 |
| DEL PEAK 7(3Q29) WILD-TYPE | 122 | 168 | 90 |
Figure S204. Get High-res Image Gene #28: 'del_3q29' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S205. Gene #28: 'del_3q29' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 7(3Q29) MUTATED | 24 | 19 | 13 | 23 | 29 | 13 | 11 |
| DEL PEAK 7(3Q29) WILD-TYPE | 54 | 91 | 84 | 25 | 24 | 36 | 66 |
Figure S205. Get High-res Image Gene #28: 'del_3q29' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00136 (Fisher's exact test), Q value = 0.0035
Table S206. Gene #29: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 8(4P16.3) MUTATED | 23 | 39 | 26 | 43 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 46 | 189 | 53 | 97 |
Figure S206. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00039 (Fisher's exact test), Q value = 0.0011
Table S207. Gene #29: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 8(4P16.3) MUTATED | 27 | 55 | 33 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 117 | 94 | 129 |
Figure S207. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0095 (Fisher's exact test), Q value = 0.02
Table S208. Gene #29: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 8(4P16.3) MUTATED | 29 | 53 | 48 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 137 | 142 | 103 |
Figure S208. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S209. Gene #29: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 8(4P16.3) MUTATED | 14 | 21 | 43 | 5 | 23 | 11 | 13 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 64 | 89 | 54 | 43 | 30 | 38 | 64 |
Figure S209. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S210. Gene #29: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 8(4P16.3) MUTATED | 26 | 79 | 25 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 163 | 149 | 68 |
Figure S210. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S211. Gene #29: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 8(4P16.3) MUTATED | 6 | 56 | 27 | 41 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 65 | 142 | 114 | 59 |
Figure S211. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00072 (Fisher's exact test), Q value = 0.002
Table S212. Gene #29: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 8(4P16.3) MUTATED | 14 | 80 | 18 |
| DEL PEAK 8(4P16.3) WILD-TYPE | 89 | 168 | 65 |
Figure S212. Get High-res Image Gene #29: 'del_4p16.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00455 (Fisher's exact test), Q value = 0.01
Table S213. Gene #30: 'del_4q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 9(4Q34.3) MUTATED | 3 | 2 | 1 | 5 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 2 | 7 | 11 | 1 |
Figure S213. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00566 (Fisher's exact test), Q value = 0.013
Table S214. Gene #30: 'del_4q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| DEL PEAK 9(4Q34.3) MUTATED | 2 | 3 | 6 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 12 | 8 | 1 |
Figure S214. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S215. Gene #30: 'del_4q34.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 9(4Q34.3) MUTATED | 40 | 49 | 42 | 57 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 29 | 179 | 37 | 83 |
Figure S215. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S216. Gene #30: 'del_4q34.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 9(4Q34.3) MUTATED | 27 | 87 | 49 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 117 | 62 | 113 |
Figure S216. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S217. Gene #30: 'del_4q34.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 9(4Q34.3) MUTATED | 35 | 73 | 78 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 131 | 122 | 73 |
Figure S217. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S218. Gene #30: 'del_4q34.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 9(4Q34.3) MUTATED | 15 | 26 | 56 | 8 | 36 | 29 | 16 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 63 | 84 | 41 | 40 | 17 | 20 | 61 |
Figure S218. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S219. Gene #30: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 9(4Q34.3) MUTATED | 39 | 117 | 30 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 150 | 111 | 63 |
Figure S219. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S220. Gene #30: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 9(4Q34.3) MUTATED | 12 | 81 | 29 | 64 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 59 | 117 | 112 | 36 |
Figure S220. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0236 (Fisher's exact test), Q value = 0.045
Table S221. Gene #30: 'del_4q34.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 9(4Q34.3) MUTATED | 43 | 86 | 30 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 102 | 112 | 61 |
Figure S221. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S222. Gene #30: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 9(4Q34.3) MUTATED | 20 | 119 | 20 |
| DEL PEAK 9(4Q34.3) WILD-TYPE | 83 | 129 | 63 |
Figure S222. Get High-res Image Gene #30: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S223. Gene #31: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 10(5Q12.1) MUTATED | 27 | 38 | 38 | 74 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 42 | 190 | 41 | 66 |
Figure S223. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S224. Gene #31: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 10(5Q12.1) MUTATED | 25 | 70 | 55 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 119 | 79 | 107 |
Figure S224. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S225. Gene #31: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 10(5Q12.1) MUTATED | 33 | 80 | 62 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 133 | 115 | 89 |
Figure S225. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S226. Gene #31: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 10(5Q12.1) MUTATED | 13 | 40 | 50 | 7 | 25 | 24 | 16 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 65 | 70 | 47 | 41 | 28 | 25 | 61 |
Figure S226. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S227. Gene #31: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 10(5Q12.1) MUTATED | 36 | 114 | 23 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 153 | 114 | 70 |
Figure S227. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S228. Gene #31: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 10(5Q12.1) MUTATED | 12 | 74 | 31 | 56 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 59 | 124 | 110 | 44 |
Figure S228. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0121 (Fisher's exact test), Q value = 0.025
Table S229. Gene #31: 'del_5q12.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 10(5Q12.1) MUTATED | 38 | 81 | 27 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 107 | 117 | 64 |
Figure S229. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S230. Gene #31: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 10(5Q12.1) MUTATED | 14 | 112 | 20 |
| DEL PEAK 10(5Q12.1) WILD-TYPE | 89 | 136 | 63 |
Figure S230. Get High-res Image Gene #31: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S231. Gene #32: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 11(5Q31.1) MUTATED | 34 | 49 | 46 | 79 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 35 | 179 | 33 | 61 |
Figure S231. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S232. Gene #32: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 11(5Q31.1) MUTATED | 31 | 81 | 72 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 113 | 68 | 90 |
Figure S232. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S233. Gene #32: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 11(5Q31.1) MUTATED | 36 | 97 | 73 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 130 | 98 | 78 |
Figure S233. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S234. Gene #32: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 11(5Q31.1) MUTATED | 13 | 51 | 54 | 11 | 30 | 27 | 20 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 65 | 59 | 43 | 37 | 23 | 22 | 57 |
Figure S234. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S235. Gene #32: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 11(5Q31.1) MUTATED | 44 | 127 | 33 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 145 | 101 | 60 |
Figure S235. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S236. Gene #32: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 11(5Q31.1) MUTATED | 16 | 87 | 36 | 65 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 55 | 111 | 105 | 35 |
Figure S236. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S237. Gene #32: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 11(5Q31.1) MUTATED | 21 | 131 | 28 |
| DEL PEAK 11(5Q31.1) WILD-TYPE | 82 | 117 | 55 |
Figure S237. Get High-res Image Gene #32: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0461 (Fisher's exact test), Q value = 0.078
Table S238. Gene #33: 'del_6q11.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 12(6Q11.1) MUTATED | 25 | 50 | 26 | 33 |
| DEL PEAK 12(6Q11.1) WILD-TYPE | 44 | 178 | 53 | 107 |
Figure S238. Get High-res Image Gene #33: 'del_6q11.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00222 (Fisher's exact test), Q value = 0.0054
Table S239. Gene #33: 'del_6q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 12(6Q11.1) MUTATED | 32 | 30 | 59 |
| DEL PEAK 12(6Q11.1) WILD-TYPE | 112 | 119 | 103 |
Figure S239. Get High-res Image Gene #33: 'del_6q11.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00039
Table S240. Gene #34: 'del_6q22.31' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 13(6Q22.31) MUTATED | 50 | 93 | 40 | 69 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 19 | 135 | 39 | 71 |
Figure S240. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S241. Gene #34: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 13(6Q22.31) MUTATED | 48 | 67 | 111 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 96 | 82 | 51 |
Figure S241. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0495 (Fisher's exact test), Q value = 0.083
Table S242. Gene #34: 'del_6q22.31' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 13(6Q22.31) MUTATED | 27 | 28 | 33 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 17 | 45 | 31 |
Figure S242. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00345 (Fisher's exact test), Q value = 0.008
Table S243. Gene #34: 'del_6q22.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 13(6Q22.31) MUTATED | 16 | 25 | 15 | 15 | 17 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 24 | 8 | 30 | 16 | 15 |
Figure S243. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00074 (Fisher's exact test), Q value = 0.002
Table S244. Gene #34: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 13(6Q22.31) MUTATED | 33 | 58 | 37 | 34 | 34 | 21 | 32 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 45 | 52 | 60 | 14 | 19 | 28 | 45 |
Figure S244. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00099 (Fisher's exact test), Q value = 0.0026
Table S245. Gene #34: 'del_6q22.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 13(6Q22.31) MUTATED | 35 | 118 | 58 | 39 |
| DEL PEAK 13(6Q22.31) WILD-TYPE | 36 | 80 | 83 | 61 |
Figure S245. Get High-res Image Gene #34: 'del_6q22.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00065 (Fisher's exact test), Q value = 0.0018
Table S246. Gene #35: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 14(6Q26) MUTATED | 49 | 98 | 42 | 68 |
| DEL PEAK 14(6Q26) WILD-TYPE | 20 | 130 | 37 | 72 |
Figure S246. Get High-res Image Gene #35: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S247. Gene #35: 'del_6q26' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 14(6Q26) MUTATED | 53 | 70 | 102 |
| DEL PEAK 14(6Q26) WILD-TYPE | 91 | 79 | 60 |
Figure S247. Get High-res Image Gene #35: 'del_6q26' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00626 (Fisher's exact test), Q value = 0.014
Table S248. Gene #35: 'del_6q26' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 14(6Q26) MUTATED | 31 | 62 | 39 | 32 | 32 | 25 | 33 |
| DEL PEAK 14(6Q26) WILD-TYPE | 47 | 48 | 58 | 16 | 21 | 24 | 44 |
Figure S248. Get High-res Image Gene #35: 'del_6q26' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0186 (Fisher's exact test), Q value = 0.037
Table S249. Gene #35: 'del_6q26' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 14(6Q26) MUTATED | 35 | 115 | 63 | 41 |
| DEL PEAK 14(6Q26) WILD-TYPE | 36 | 83 | 78 | 59 |
Figure S249. Get High-res Image Gene #35: 'del_6q26' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0233 (Fisher's exact test), Q value = 0.044
Table S250. Gene #36: 'del_8p23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 15(8P23.2) MUTATED | 5 | 7 | 5 | 6 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 0 | 2 | 7 | 0 |
Figure S250. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0481 (Fisher's exact test), Q value = 0.081
Table S251. Gene #36: 'del_8p23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| DEL PEAK 15(8P23.2) MUTATED | 7 | 9 | 7 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 7 | 2 | 0 |
Figure S251. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S252. Gene #36: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 15(8P23.2) MUTATED | 32 | 78 | 47 | 100 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 37 | 150 | 32 | 40 |
Figure S252. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0382 (Fisher's exact test), Q value = 0.067
Table S253. Gene #36: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 15(8P23.2) MUTATED | 59 | 75 | 90 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 85 | 74 | 72 |
Figure S253. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00924 (Fisher's exact test), Q value = 0.02
Table S254. Gene #36: 'del_8p23.2' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 15(8P23.2) MUTATED | 13 | 42 | 34 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 31 | 31 | 30 |
Figure S254. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
Table S255. Gene #36: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 15(8P23.2) MUTATED | 20 | 9 | 35 | 14 | 11 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 20 | 24 | 10 | 17 | 21 |
Figure S255. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S256. Gene #36: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 15(8P23.2) MUTATED | 63 | 135 | 57 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 103 | 60 | 94 |
Figure S256. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S257. Gene #36: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 15(8P23.2) MUTATED | 34 | 72 | 64 | 11 | 20 | 24 | 30 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 44 | 38 | 33 | 37 | 33 | 25 | 47 |
Figure S257. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00035 (Fisher's exact test), Q value = 0.001
Table S258. Gene #36: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 15(8P23.2) MUTATED | 72 | 127 | 54 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 117 | 101 | 39 |
Figure S258. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0102 (Fisher's exact test), Q value = 0.021
Table S259. Gene #36: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 15(8P23.2) MUTATED | 27 | 108 | 60 | 58 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 44 | 90 | 81 | 42 |
Figure S259. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0212 (Fisher's exact test), Q value = 0.041
Table S260. Gene #36: 'del_8p23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 15(8P23.2) MUTATED | 57 | 104 | 50 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 88 | 94 | 41 |
Figure S260. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00077 (Fisher's exact test), Q value = 0.0021
Table S261. Gene #36: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 15(8P23.2) MUTATED | 34 | 136 | 41 |
| DEL PEAK 15(8P23.2) WILD-TYPE | 69 | 112 | 42 |
Figure S261. Get High-res Image Gene #36: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S262. Gene #37: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 16(8P11.21) MUTATED | 5 | 34 | 24 | 60 |
| DEL PEAK 16(8P11.21) WILD-TYPE | 64 | 194 | 55 | 80 |
Figure S262. Get High-res Image Gene #37: 'del_8p11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0377 (Fisher's exact test), Q value = 0.067
Table S263. Gene #37: 'del_8p11.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 16(8P11.21) MUTATED | 10 | 3 | 17 | 5 | 9 |
| DEL PEAK 16(8P11.21) WILD-TYPE | 30 | 30 | 28 | 26 | 23 |
Figure S263. Get High-res Image Gene #37: 'del_8p11.21' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00252 (Fisher's exact test), Q value = 0.006
Table S264. Gene #37: 'del_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 16(8P11.21) MUTATED | 35 | 62 | 25 |
| DEL PEAK 16(8P11.21) WILD-TYPE | 131 | 133 | 126 |
Figure S264. Get High-res Image Gene #37: 'del_8p11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S265. Gene #38: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 17(9P23) MUTATED | 34 | 100 | 63 | 88 |
| DEL PEAK 17(9P23) WILD-TYPE | 35 | 128 | 16 | 52 |
Figure S265. Get High-res Image Gene #38: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0408 (Fisher's exact test), Q value = 0.071
Table S266. Gene #38: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 17(9P23) MUTATED | 69 | 93 | 86 |
| DEL PEAK 17(9P23) WILD-TYPE | 75 | 56 | 76 |
Figure S266. Get High-res Image Gene #38: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0424 (Fisher's exact test), Q value = 0.074
Table S267. Gene #38: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 17(9P23) MUTATED | 81 | 107 | 95 |
| DEL PEAK 17(9P23) WILD-TYPE | 85 | 88 | 56 |
Figure S267. Get High-res Image Gene #38: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.00077
Table S268. Gene #38: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 17(9P23) MUTATED | 42 | 51 | 63 | 24 | 27 | 40 | 36 |
| DEL PEAK 17(9P23) WILD-TYPE | 36 | 59 | 34 | 24 | 26 | 9 | 41 |
Figure S268. Get High-res Image Gene #38: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0257 (Fisher's exact test), Q value = 0.048
Table S269. Gene #38: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 17(9P23) MUTATED | 35 | 106 | 71 | 68 |
| DEL PEAK 17(9P23) WILD-TYPE | 36 | 92 | 70 | 32 |
Figure S269. Get High-res Image Gene #38: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S270. Gene #39: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 18(9P21.3) MUTATED | 32 | 104 | 65 | 90 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 37 | 124 | 14 | 50 |
Figure S270. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0179 (Fisher's exact test), Q value = 0.035
Table S271. Gene #39: 'del_9p21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 18(9P21.3) MUTATED | 67 | 94 | 89 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 77 | 55 | 73 |
Figure S271. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0376 (Fisher's exact test), Q value = 0.067
Table S272. Gene #39: 'del_9p21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 18(9P21.3) MUTATED | 24 | 19 | 29 | 22 | 11 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 16 | 14 | 16 | 9 | 21 |
Figure S272. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S273. Gene #39: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 18(9P21.3) MUTATED | 45 | 54 | 63 | 23 | 25 | 43 | 36 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 33 | 56 | 34 | 25 | 28 | 6 | 41 |
Figure S273. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00178 (Fisher's exact test), Q value = 0.0044
Table S274. Gene #39: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 18(9P21.3) MUTATED | 35 | 104 | 75 | 73 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 36 | 94 | 66 | 27 |
Figure S274. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0442 (Fisher's exact test), Q value = 0.076
Table S275. Gene #39: 'del_9p21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 18(9P21.3) MUTATED | 91 | 98 | 53 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 54 | 100 | 38 |
Figure S275. Get High-res Image Gene #39: 'del_9p21.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S276. Gene #40: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 19(9Q21.11) MUTATED | 39 | 81 | 58 | 78 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 30 | 147 | 21 | 62 |
Figure S276. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00024
Table S277. Gene #40: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 19(9Q21.11) MUTATED | 57 | 94 | 70 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 87 | 55 | 92 |
Figure S277. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00557 (Fisher's exact test), Q value = 0.012
Table S278. Gene #40: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 19(9Q21.11) MUTATED | 67 | 99 | 88 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 99 | 96 | 63 |
Figure S278. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S279. Gene #40: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 19(9Q21.11) MUTATED | 35 | 47 | 59 | 16 | 38 | 31 | 28 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 43 | 63 | 38 | 32 | 15 | 18 | 49 |
Figure S279. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S280. Gene #40: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 19(9Q21.11) MUTATED | 70 | 125 | 57 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 119 | 103 | 36 |
Figure S280. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S281. Gene #40: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 19(9Q21.11) MUTATED | 26 | 101 | 54 | 71 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 45 | 97 | 87 | 29 |
Figure S281. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.00059
Table S282. Gene #40: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 19(9Q21.11) MUTATED | 34 | 141 | 40 |
| DEL PEAK 19(9Q21.11) WILD-TYPE | 69 | 107 | 43 |
Figure S282. Get High-res Image Gene #40: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00644 (Fisher's exact test), Q value = 0.014
Table S283. Gene #41: 'del_10p15.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 20(10P15.3) MUTATED | 15 | 41 | 25 | 45 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 54 | 187 | 54 | 95 |
Figure S283. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00982 (Fisher's exact test), Q value = 0.021
Table S284. Gene #41: 'del_10p15.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 20(10P15.3) MUTATED | 23 | 46 | 41 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 121 | 103 | 121 |
Figure S284. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00202 (Fisher's exact test), Q value = 0.0049
Table S285. Gene #41: 'del_10p15.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 20(10P15.3) MUTATED | 16 | 26 | 39 | 6 | 16 | 8 | 14 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 62 | 84 | 58 | 42 | 37 | 41 | 63 |
Figure S285. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00242 (Fisher's exact test), Q value = 0.0058
Table S286. Gene #41: 'del_10p15.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 20(10P15.3) MUTATED | 33 | 58 | 34 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 156 | 170 | 59 |
Figure S286. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0188 (Fisher's exact test), Q value = 0.037
Table S287. Gene #41: 'del_10p15.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 20(10P15.3) MUTATED | 9 | 51 | 32 | 33 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 62 | 147 | 109 | 67 |
Figure S287. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.032 (Fisher's exact test), Q value = 0.058
Table S288. Gene #41: 'del_10p15.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 20(10P15.3) MUTATED | 26 | 54 | 29 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 119 | 144 | 62 |
Figure S288. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0122 (Fisher's exact test), Q value = 0.025
Table S289. Gene #41: 'del_10p15.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 20(10P15.3) MUTATED | 15 | 69 | 25 |
| DEL PEAK 20(10P15.3) WILD-TYPE | 88 | 179 | 58 |
Figure S289. Get High-res Image Gene #41: 'del_10p15.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00038 (Fisher's exact test), Q value = 0.0011
Table S290. Gene #42: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 21(10Q26.3) MUTATED | 18 | 53 | 23 | 62 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 51 | 175 | 56 | 78 |
Figure S290. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0384 (Fisher's exact test), Q value = 0.068
Table S291. Gene #42: 'del_10q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 21(10Q26.3) MUTATED | 32 | 53 | 50 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 112 | 96 | 112 |
Figure S291. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
Table S292. Gene #42: 'del_10q26.3' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 21(10Q26.3) MUTATED | 5 | 36 | 20 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 39 | 37 | 44 |
Figure S292. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 7e-04
Table S293. Gene #42: 'del_10q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 21(10Q26.3) MUTATED | 21 | 4 | 21 | 10 | 5 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 19 | 29 | 24 | 21 | 27 |
Figure S293. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00289 (Fisher's exact test), Q value = 0.0069
Table S294. Gene #42: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 21(10Q26.3) MUTATED | 42 | 76 | 36 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 124 | 119 | 115 |
Figure S294. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S295. Gene #42: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 21(10Q26.3) MUTATED | 23 | 44 | 48 | 1 | 11 | 9 | 18 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 55 | 66 | 49 | 47 | 42 | 40 | 59 |
Figure S295. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0124 (Fisher's exact test), Q value = 0.025
Table S296. Gene #42: 'del_10q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 21(10Q26.3) MUTATED | 43 | 74 | 36 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 146 | 154 | 57 |
Figure S296. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00137 (Fisher's exact test), Q value = 0.0035
Table S297. Gene #42: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 21(10Q26.3) MUTATED | 12 | 62 | 36 | 43 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 59 | 136 | 105 | 57 |
Figure S297. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00123 (Fisher's exact test), Q value = 0.0032
Table S298. Gene #42: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 21(10Q26.3) MUTATED | 16 | 85 | 26 |
| DEL PEAK 21(10Q26.3) WILD-TYPE | 87 | 163 | 57 |
Figure S298. Get High-res Image Gene #42: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.032 (Fisher's exact test), Q value = 0.058
Table S299. Gene #43: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| DEL PEAK 22(11P15.5) MUTATED | 1 | 2 | 4 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 13 | 9 | 3 |
Figure S299. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S300. Gene #43: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 22(11P15.5) MUTATED | 20 | 31 | 30 | 62 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 49 | 197 | 49 | 78 |
Figure S300. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00089 (Fisher's exact test), Q value = 0.0024
Table S301. Gene #43: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 22(11P15.5) MUTATED | 27 | 57 | 42 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 117 | 92 | 120 |
Figure S301. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S302. Gene #43: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 22(11P15.5) MUTATED | 26 | 72 | 42 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 140 | 123 | 109 |
Figure S302. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S303. Gene #43: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 22(11P15.5) MUTATED | 8 | 36 | 38 | 8 | 14 | 23 | 13 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 70 | 74 | 59 | 40 | 39 | 26 | 64 |
Figure S303. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.00059
Table S304. Gene #43: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 22(11P15.5) MUTATED | 35 | 82 | 23 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 154 | 146 | 70 |
Figure S304. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00025 (Fisher's exact test), Q value = 0.00074
Table S305. Gene #43: 'del_11p15.5' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 22(11P15.5) MUTATED | 14 | 63 | 24 | 39 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 57 | 135 | 117 | 61 |
Figure S305. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00042 (Fisher's exact test), Q value = 0.0012
Table S306. Gene #43: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 22(11P15.5) MUTATED | 17 | 87 | 17 |
| DEL PEAK 22(11P15.5) WILD-TYPE | 86 | 161 | 66 |
Figure S306. Get High-res Image Gene #43: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S307. Gene #44: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 23(11Q23.2) MUTATED | 31 | 34 | 30 | 24 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 38 | 194 | 49 | 116 |
Figure S307. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00024 (Fisher's exact test), Q value = 0.00072
Table S308. Gene #44: 'del_11q23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 23(11Q23.2) MUTATED | 21 | 51 | 32 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 123 | 98 | 130 |
Figure S308. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0372 (Fisher's exact test), Q value = 0.066
Table S309. Gene #44: 'del_11q23.2' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 23(11Q23.2) MUTATED | 8 | 11 | 21 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 36 | 62 | 43 |
Figure S309. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S310. Gene #44: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 23(11Q23.2) MUTATED | 20 | 44 | 53 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 146 | 151 | 98 |
Figure S310. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00067 (Fisher's exact test), Q value = 0.0019
Table S311. Gene #44: 'del_11q23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 23(11Q23.2) MUTATED | 10 | 26 | 22 | 15 | 20 | 16 | 8 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 68 | 84 | 75 | 33 | 33 | 33 | 69 |
Figure S311. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00248 (Fisher's exact test), Q value = 0.006
Table S312. Gene #44: 'del_11q23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 23(11Q23.2) MUTATED | 35 | 69 | 14 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 154 | 159 | 79 |
Figure S312. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0444 (Fisher's exact test), Q value = 0.076
Table S313. Gene #44: 'del_11q23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 23(11Q23.2) MUTATED | 29 | 55 | 14 |
| DEL PEAK 23(11Q23.2) WILD-TYPE | 116 | 143 | 77 |
Figure S313. Get High-res Image Gene #44: 'del_11q23.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00021
Table S314. Gene #45: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 24(11Q25) MUTATED | 27 | 34 | 26 | 30 |
| DEL PEAK 24(11Q25) WILD-TYPE | 42 | 194 | 53 | 110 |
Figure S314. Get High-res Image Gene #45: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.00059
Table S315. Gene #45: 'del_11q25' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 24(11Q25) MUTATED | 19 | 50 | 36 |
| DEL PEAK 24(11Q25) WILD-TYPE | 125 | 99 | 126 |
Figure S315. Get High-res Image Gene #45: 'del_11q25' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00414 (Fisher's exact test), Q value = 0.0095
Table S316. Gene #45: 'del_11q25' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 24(11Q25) MUTATED | 9 | 8 | 22 |
| DEL PEAK 24(11Q25) WILD-TYPE | 35 | 65 | 42 |
Figure S316. Get High-res Image Gene #45: 'del_11q25' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00021
Table S317. Gene #45: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 24(11Q25) MUTATED | 19 | 47 | 49 |
| DEL PEAK 24(11Q25) WILD-TYPE | 147 | 148 | 102 |
Figure S317. Get High-res Image Gene #45: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00302 (Fisher's exact test), Q value = 0.0071
Table S318. Gene #45: 'del_11q25' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 24(11Q25) MUTATED | 11 | 25 | 22 | 14 | 19 | 16 | 8 |
| DEL PEAK 24(11Q25) WILD-TYPE | 67 | 85 | 75 | 34 | 34 | 33 | 69 |
Figure S318. Get High-res Image Gene #45: 'del_11q25' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S319. Gene #46: 'del_12p13.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 25(12P13.2) MUTATED | 18 | 50 | 9 | 61 |
| DEL PEAK 25(12P13.2) WILD-TYPE | 51 | 178 | 70 | 79 |
Figure S319. Get High-res Image Gene #46: 'del_12p13.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0117 (Fisher's exact test), Q value = 0.024
Table S320. Gene #46: 'del_12p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 25(12P13.2) MUTATED | 26 | 41 | 53 |
| DEL PEAK 25(12P13.2) WILD-TYPE | 118 | 108 | 109 |
Figure S320. Get High-res Image Gene #46: 'del_12p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 5e-04
Table S321. Gene #46: 'del_12p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 25(12P13.2) MUTATED | 54 | 60 | 22 |
| DEL PEAK 25(12P13.2) WILD-TYPE | 112 | 135 | 129 |
Figure S321. Get High-res Image Gene #46: 'del_12p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00962 (Fisher's exact test), Q value = 0.02
Table S322. Gene #46: 'del_12p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 25(12P13.2) MUTATED | 23 | 35 | 34 | 11 | 8 | 5 | 20 |
| DEL PEAK 25(12P13.2) WILD-TYPE | 55 | 75 | 63 | 37 | 45 | 44 | 57 |
Figure S322. Get High-res Image Gene #46: 'del_12p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S323. Gene #47: 'del_12q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 26(12Q12) MUTATED | 8 | 37 | 5 | 48 |
| DEL PEAK 26(12Q12) WILD-TYPE | 61 | 191 | 74 | 92 |
Figure S323. Get High-res Image Gene #47: 'del_12q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0253 (Fisher's exact test), Q value = 0.047
Table S324. Gene #47: 'del_12q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 26(12Q12) MUTATED | 25 | 21 | 42 |
| DEL PEAK 26(12Q12) WILD-TYPE | 119 | 128 | 120 |
Figure S324. Get High-res Image Gene #47: 'del_12q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.00033
Table S325. Gene #47: 'del_12q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 26(12Q12) MUTATED | 42 | 43 | 12 |
| DEL PEAK 26(12Q12) WILD-TYPE | 124 | 152 | 139 |
Figure S325. Get High-res Image Gene #47: 'del_12q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0447 (Fisher's exact test), Q value = 0.077
Table S326. Gene #47: 'del_12q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 26(12Q12) MUTATED | 16 | 26 | 20 | 10 | 2 | 7 | 16 |
| DEL PEAK 26(12Q12) WILD-TYPE | 62 | 84 | 77 | 38 | 51 | 42 | 61 |
Figure S326. Get High-res Image Gene #47: 'del_12q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0261 (Fisher's exact test), Q value = 0.048
Table S327. Gene #47: 'del_12q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 26(12Q12) MUTATED | 16 | 43 | 25 |
| DEL PEAK 26(12Q12) WILD-TYPE | 87 | 205 | 58 |
Figure S327. Get High-res Image Gene #47: 'del_12q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9e-05 (Fisher's exact test), Q value = 3e-04
Table S328. Gene #48: 'del_12q24.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 27(12Q24.33) MUTATED | 10 | 60 | 12 | 55 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 59 | 168 | 67 | 85 |
Figure S328. Get High-res Image Gene #48: 'del_12q24.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0204 (Fisher's exact test), Q value = 0.04
Table S329. Gene #48: 'del_12q24.33' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 27(12Q24.33) MUTATED | 17 | 28 | 12 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 27 | 45 | 52 |
Figure S329. Get High-res Image Gene #48: 'del_12q24.33' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S330. Gene #48: 'del_12q24.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 27(12Q24.33) MUTATED | 55 | 60 | 21 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 111 | 135 | 130 |
Figure S330. Get High-res Image Gene #48: 'del_12q24.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S331. Gene #48: 'del_12q24.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 27(12Q24.33) MUTATED | 22 | 34 | 31 | 16 | 2 | 6 | 25 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 56 | 76 | 66 | 32 | 51 | 43 | 52 |
Figure S331. Get High-res Image Gene #48: 'del_12q24.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0119 (Fisher's exact test), Q value = 0.024
Table S332. Gene #48: 'del_12q24.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 27(12Q24.33) MUTATED | 20 | 50 | 49 | 16 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 51 | 148 | 92 | 84 |
Figure S332. Get High-res Image Gene #48: 'del_12q24.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00077 (Fisher's exact test), Q value = 0.0021
Table S333. Gene #49: 'del_13q12.11' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 28(13Q12.11) MUTATED | 5 | 6 | 1 | 4 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 0 | 3 | 11 | 2 |
Figure S333. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0229 (Fisher's exact test), Q value = 0.044
Table S334. Gene #49: 'del_13q12.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| DEL PEAK 28(13Q12.11) MUTATED | 3 | 8 | 5 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 11 | 3 | 2 |
Figure S334. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S335. Gene #49: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 28(13Q12.11) MUTATED | 49 | 86 | 48 | 111 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 20 | 142 | 31 | 29 |
Figure S335. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00142 (Fisher's exact test), Q value = 0.0036
Table S336. Gene #49: 'del_13q12.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 28(13Q12.11) MUTATED | 65 | 94 | 103 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 79 | 55 | 59 |
Figure S336. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00693 (Fisher's exact test), Q value = 0.015
Table S337. Gene #49: 'del_13q12.11' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 28(13Q12.11) MUTATED | 18 | 49 | 29 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 26 | 24 | 35 |
Figure S337. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 7e-04
Table S338. Gene #49: 'del_13q12.11' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 28(13Q12.11) MUTATED | 27 | 11 | 33 | 13 | 12 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 13 | 22 | 12 | 18 | 20 |
Figure S338. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S339. Gene #49: 'del_13q12.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 28(13Q12.11) MUTATED | 73 | 133 | 85 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 93 | 62 | 66 |
Figure S339. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S340. Gene #49: 'del_13q12.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 28(13Q12.11) MUTATED | 38 | 80 | 67 | 15 | 39 | 22 | 30 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 40 | 30 | 30 | 33 | 14 | 27 | 47 |
Figure S340. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00338 (Fisher's exact test), Q value = 0.0079
Table S341. Gene #49: 'del_13q12.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 28(13Q12.11) MUTATED | 90 | 143 | 59 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 99 | 85 | 34 |
Figure S341. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0038 (Fisher's exact test), Q value = 0.0088
Table S342. Gene #49: 'del_13q12.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 28(13Q12.11) MUTATED | 37 | 124 | 65 | 66 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 34 | 74 | 76 | 34 |
Figure S342. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00081 (Fisher's exact test), Q value = 0.0022
Table S343. Gene #49: 'del_13q12.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 28(13Q12.11) MUTATED | 44 | 160 | 48 |
| DEL PEAK 28(13Q12.11) WILD-TYPE | 59 | 88 | 35 |
Figure S343. Get High-res Image Gene #49: 'del_13q12.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00891 (Fisher's exact test), Q value = 0.019
Table S344. Gene #50: 'del_13q12.13' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 29(13Q12.13) MUTATED | 4 | 5 | 1 | 4 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 1 | 4 | 11 | 2 |
Figure S344. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S345. Gene #50: 'del_13q12.13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 29(13Q12.13) MUTATED | 51 | 85 | 46 | 111 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 18 | 143 | 33 | 29 |
Figure S345. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00158 (Fisher's exact test), Q value = 0.004
Table S346. Gene #50: 'del_13q12.13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 29(13Q12.13) MUTATED | 65 | 93 | 103 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 79 | 56 | 59 |
Figure S346. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0087 (Fisher's exact test), Q value = 0.018
Table S347. Gene #50: 'del_13q12.13' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 29(13Q12.13) MUTATED | 18 | 49 | 30 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 26 | 24 | 34 |
Figure S347. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 6e-04 (Fisher's exact test), Q value = 0.0017
Table S348. Gene #50: 'del_13q12.13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 29(13Q12.13) MUTATED | 27 | 12 | 33 | 13 | 12 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 13 | 21 | 12 | 18 | 20 |
Figure S348. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S349. Gene #50: 'del_13q12.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 29(13Q12.13) MUTATED | 74 | 131 | 85 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 92 | 64 | 66 |
Figure S349. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S350. Gene #50: 'del_13q12.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 29(13Q12.13) MUTATED | 40 | 79 | 63 | 15 | 41 | 23 | 29 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 38 | 31 | 34 | 33 | 12 | 26 | 48 |
Figure S350. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00419 (Fisher's exact test), Q value = 0.0096
Table S351. Gene #50: 'del_13q12.13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 29(13Q12.13) MUTATED | 90 | 142 | 59 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 99 | 86 | 34 |
Figure S351. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00585 (Fisher's exact test), Q value = 0.013
Table S352. Gene #50: 'del_13q12.13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 29(13Q12.13) MUTATED | 36 | 123 | 66 | 66 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 35 | 75 | 75 | 34 |
Figure S352. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00068 (Fisher's exact test), Q value = 0.0019
Table S353. Gene #50: 'del_13q12.13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 29(13Q12.13) MUTATED | 44 | 161 | 49 |
| DEL PEAK 29(13Q12.13) WILD-TYPE | 59 | 87 | 34 |
Figure S353. Get High-res Image Gene #50: 'del_13q12.13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0119 (Fisher's exact test), Q value = 0.024
Table S354. Gene #51: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 30(13Q14.2) MUTATED | 4 | 4 | 1 | 4 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 1 | 5 | 11 | 2 |
Figure S354. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0238 (Fisher's exact test), Q value = 0.045
Table S355. Gene #51: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 14 | 11 | 7 |
| DEL PEAK 30(13Q14.2) MUTATED | 2 | 6 | 5 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 12 | 5 | 2 |
Figure S355. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S356. Gene #51: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 30(13Q14.2) MUTATED | 51 | 77 | 43 | 111 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 18 | 151 | 36 | 29 |
Figure S356. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00503 (Fisher's exact test), Q value = 0.011
Table S357. Gene #51: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 30(13Q14.2) MUTATED | 62 | 89 | 96 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 82 | 60 | 66 |
Figure S357. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00868 (Fisher's exact test), Q value = 0.018
Table S358. Gene #51: 'del_13q14.2' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 30(13Q14.2) MUTATED | 15 | 46 | 30 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 29 | 27 | 34 |
Figure S358. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00256 (Fisher's exact test), Q value = 0.0061
Table S359. Gene #51: 'del_13q14.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 30(13Q14.2) MUTATED | 26 | 11 | 30 | 13 | 11 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 14 | 22 | 15 | 18 | 21 |
Figure S359. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 9e-05 (Fisher's exact test), Q value = 3e-04
Table S360. Gene #51: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 30(13Q14.2) MUTATED | 70 | 126 | 83 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 96 | 69 | 68 |
Figure S360. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S361. Gene #51: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 30(13Q14.2) MUTATED | 38 | 78 | 61 | 12 | 41 | 21 | 28 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 40 | 32 | 36 | 36 | 12 | 28 | 49 |
Figure S361. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00195 (Fisher's exact test), Q value = 0.0048
Table S362. Gene #51: 'del_13q14.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 30(13Q14.2) MUTATED | 84 | 139 | 55 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 105 | 89 | 38 |
Figure S362. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00524 (Fisher's exact test), Q value = 0.012
Table S363. Gene #51: 'del_13q14.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 30(13Q14.2) MUTATED | 33 | 123 | 63 | 59 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 38 | 75 | 78 | 41 |
Figure S363. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0497 (Fisher's exact test), Q value = 0.083
Table S364. Gene #51: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 30(13Q14.2) MUTATED | 71 | 122 | 47 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 74 | 76 | 44 |
Figure S364. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00024
Table S365. Gene #51: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 30(13Q14.2) MUTATED | 39 | 156 | 45 |
| DEL PEAK 30(13Q14.2) WILD-TYPE | 64 | 92 | 38 |
Figure S365. Get High-res Image Gene #51: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0241 (Fisher's exact test), Q value = 0.045
Table S366. Gene #52: 'del_13q34' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 31(13Q34) MUTATED | 3 | 5 | 1 | 4 |
| DEL PEAK 31(13Q34) WILD-TYPE | 2 | 4 | 11 | 2 |
Figure S366. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S367. Gene #52: 'del_13q34' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 31(13Q34) MUTATED | 49 | 67 | 37 | 90 |
| DEL PEAK 31(13Q34) WILD-TYPE | 20 | 161 | 42 | 50 |
Figure S367. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0394 (Fisher's exact test), Q value = 0.069
Table S368. Gene #52: 'del_13q34' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 31(13Q34) MUTATED | 55 | 74 | 84 |
| DEL PEAK 31(13Q34) WILD-TYPE | 89 | 75 | 78 |
Figure S368. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00123 (Fisher's exact test), Q value = 0.0032
Table S369. Gene #52: 'del_13q34' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 31(13Q34) MUTATED | 10 | 41 | 24 |
| DEL PEAK 31(13Q34) WILD-TYPE | 34 | 32 | 40 |
Figure S369. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0208 (Fisher's exact test), Q value = 0.04
Table S370. Gene #52: 'del_13q34' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 31(13Q34) MUTATED | 23 | 10 | 23 | 11 | 8 |
| DEL PEAK 31(13Q34) WILD-TYPE | 17 | 23 | 22 | 20 | 24 |
Figure S370. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 5e-04 (Fisher's exact test), Q value = 0.0014
Table S371. Gene #52: 'del_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 31(13Q34) MUTATED | 58 | 108 | 74 |
| DEL PEAK 31(13Q34) WILD-TYPE | 108 | 87 | 77 |
Figure S371. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S372. Gene #52: 'del_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 31(13Q34) MUTATED | 31 | 70 | 49 | 14 | 34 | 19 | 23 |
| DEL PEAK 31(13Q34) WILD-TYPE | 47 | 40 | 48 | 34 | 19 | 30 | 54 |
Figure S372. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00773 (Fisher's exact test), Q value = 0.017
Table S373. Gene #52: 'del_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 31(13Q34) MUTATED | 73 | 113 | 53 |
| DEL PEAK 31(13Q34) WILD-TYPE | 116 | 115 | 40 |
Figure S373. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0201 (Fisher's exact test), Q value = 0.039
Table S374. Gene #52: 'del_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 31(13Q34) MUTATED | 31 | 108 | 53 | 47 |
| DEL PEAK 31(13Q34) WILD-TYPE | 40 | 90 | 88 | 53 |
Figure S374. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0217 (Fisher's exact test), Q value = 0.042
Table S375. Gene #52: 'del_13q34' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 31(13Q34) MUTATED | 37 | 129 | 39 |
| DEL PEAK 31(13Q34) WILD-TYPE | 66 | 119 | 44 |
Figure S375. Get High-res Image Gene #52: 'del_13q34' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S376. Gene #53: 'del_14q32.12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 32(14Q32.12) MUTATED | 15 | 44 | 41 | 44 |
| DEL PEAK 32(14Q32.12) WILD-TYPE | 54 | 184 | 38 | 96 |
Figure S376. Get High-res Image Gene #53: 'del_14q32.12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00337 (Fisher's exact test), Q value = 0.0079
Table S377. Gene #53: 'del_14q32.12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 32(14Q32.12) MUTATED | 27 | 54 | 44 |
| DEL PEAK 32(14Q32.12) WILD-TYPE | 117 | 95 | 118 |
Figure S377. Get High-res Image Gene #53: 'del_14q32.12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0117 (Fisher's exact test), Q value = 0.024
Table S378. Gene #53: 'del_14q32.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 32(14Q32.12) MUTATED | 17 | 31 | 27 | 12 | 16 | 25 | 15 |
| DEL PEAK 32(14Q32.12) WILD-TYPE | 61 | 79 | 70 | 36 | 37 | 24 | 62 |
Figure S378. Get High-res Image Gene #53: 'del_14q32.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00742 (Fisher's exact test), Q value = 0.016
Table S379. Gene #53: 'del_14q32.12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 32(14Q32.12) MUTATED | 48 | 79 | 17 |
| DEL PEAK 32(14Q32.12) WILD-TYPE | 141 | 149 | 76 |
Figure S379. Get High-res Image Gene #53: 'del_14q32.12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.046 (Fisher's exact test), Q value = 0.078
Table S380. Gene #53: 'del_14q32.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 32(14Q32.12) MUTATED | 48 | 58 | 17 |
| DEL PEAK 32(14Q32.12) WILD-TYPE | 97 | 140 | 74 |
Figure S380. Get High-res Image Gene #53: 'del_14q32.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S381. Gene #54: 'del_15q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 33(15Q11.2) MUTATED | 46 | 77 | 37 | 102 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 23 | 151 | 42 | 38 |
Figure S381. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00107 (Fisher's exact test), Q value = 0.0028
Table S382. Gene #54: 'del_15q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 33(15Q11.2) MUTATED | 54 | 79 | 94 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 90 | 70 | 68 |
Figure S382. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0064 (Fisher's exact test), Q value = 0.014
Table S383. Gene #54: 'del_15q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 33(15Q11.2) MUTATED | 23 | 9 | 29 | 11 | 17 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 17 | 24 | 16 | 20 | 15 |
Figure S383. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00087 (Fisher's exact test), Q value = 0.0023
Table S384. Gene #54: 'del_15q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 33(15Q11.2) MUTATED | 72 | 119 | 67 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 94 | 76 | 84 |
Figure S384. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S385. Gene #54: 'del_15q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 33(15Q11.2) MUTATED | 39 | 73 | 62 | 11 | 36 | 9 | 28 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 39 | 37 | 35 | 37 | 17 | 40 | 49 |
Figure S385. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S386. Gene #54: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 33(15Q11.2) MUTATED | 71 | 133 | 55 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 118 | 95 | 38 |
Figure S386. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00674 (Fisher's exact test), Q value = 0.015
Table S387. Gene #54: 'del_15q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 33(15Q11.2) MUTATED | 28 | 116 | 61 | 54 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 43 | 82 | 80 | 46 |
Figure S387. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
Table S388. Gene #54: 'del_15q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 33(15Q11.2) MUTATED | 33 | 136 | 51 |
| DEL PEAK 33(15Q11.2) WILD-TYPE | 70 | 112 | 32 |
Figure S388. Get High-res Image Gene #54: 'del_15q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S389. Gene #55: 'del_15q15.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 34(15Q15.1) MUTATED | 51 | 79 | 36 | 108 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 18 | 149 | 43 | 32 |
Figure S389. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S390. Gene #55: 'del_15q15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 34(15Q15.1) MUTATED | 52 | 82 | 101 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 92 | 67 | 61 |
Figure S390. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0158 (Fisher's exact test), Q value = 0.032
Table S391. Gene #55: 'del_15q15.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 34(15Q15.1) MUTATED | 23 | 11 | 30 | 11 | 17 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 17 | 22 | 15 | 20 | 15 |
Figure S391. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00011 (Fisher's exact test), Q value = 0.00036
Table S392. Gene #55: 'del_15q15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 34(15Q15.1) MUTATED | 73 | 126 | 71 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 93 | 69 | 80 |
Figure S392. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S393. Gene #55: 'del_15q15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 34(15Q15.1) MUTATED | 39 | 76 | 64 | 12 | 39 | 11 | 29 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 39 | 34 | 33 | 36 | 14 | 38 | 48 |
Figure S393. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S394. Gene #55: 'del_15q15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 34(15Q15.1) MUTATED | 73 | 141 | 57 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 116 | 87 | 36 |
Figure S394. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00031 (Fisher's exact test), Q value = 0.00091
Table S395. Gene #55: 'del_15q15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 34(15Q15.1) MUTATED | 30 | 125 | 59 | 57 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 41 | 73 | 82 | 43 |
Figure S395. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S396. Gene #55: 'del_15q15.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 34(15Q15.1) MUTATED | 33 | 146 | 49 |
| DEL PEAK 34(15Q15.1) WILD-TYPE | 70 | 102 | 34 |
Figure S396. Get High-res Image Gene #55: 'del_15q15.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S397. Gene #56: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 35(16Q23.1) MUTATED | 30 | 48 | 34 | 58 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 39 | 180 | 45 | 82 |
Figure S397. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S398. Gene #56: 'del_16q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 35(16Q23.1) MUTATED | 26 | 55 | 66 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 118 | 94 | 96 |
Figure S398. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00168 (Fisher's exact test), Q value = 0.0042
Table S399. Gene #56: 'del_16q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 35(16Q23.1) MUTATED | 8 | 10 | 26 | 7 | 8 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 32 | 23 | 19 | 24 | 24 |
Figure S399. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S400. Gene #56: 'del_16q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 35(16Q23.1) MUTATED | 36 | 92 | 42 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 130 | 103 | 109 |
Figure S400. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S401. Gene #56: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 35(16Q23.1) MUTATED | 20 | 60 | 37 | 9 | 17 | 17 | 10 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 58 | 50 | 60 | 39 | 36 | 32 | 67 |
Figure S401. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0217 (Fisher's exact test), Q value = 0.042
Table S402. Gene #56: 'del_16q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 35(16Q23.1) MUTATED | 49 | 87 | 34 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 140 | 141 | 59 |
Figure S402. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00331 (Fisher's exact test), Q value = 0.0077
Table S403. Gene #56: 'del_16q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 35(16Q23.1) MUTATED | 20 | 77 | 32 | 41 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 51 | 121 | 109 | 59 |
Figure S403. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00053 (Fisher's exact test), Q value = 0.0015
Table S404. Gene #56: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 35(16Q23.1) MUTATED | 18 | 94 | 29 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 85 | 154 | 54 |
Figure S404. Get High-res Image Gene #56: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S405. Gene #57: 'del_17p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 36(17P13.3) MUTATED | 39 | 84 | 45 | 113 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 30 | 144 | 34 | 27 |
Figure S405. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S406. Gene #57: 'del_17p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 36(17P13.3) MUTATED | 54 | 82 | 108 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 90 | 67 | 54 |
Figure S406. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00072 (Fisher's exact test), Q value = 0.002
Table S407. Gene #57: 'del_17p13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 36(17P13.3) MUTATED | 19 | 55 | 33 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 25 | 18 | 31 |
Figure S407. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00118 (Fisher's exact test), Q value = 0.0031
Table S408. Gene #57: 'del_17p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 36(17P13.3) MUTATED | 29 | 10 | 33 | 17 | 18 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 11 | 23 | 12 | 14 | 14 |
Figure S408. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S409. Gene #57: 'del_17p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 36(17P13.3) MUTATED | 78 | 132 | 69 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 88 | 63 | 82 |
Figure S409. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S410. Gene #57: 'del_17p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 36(17P13.3) MUTATED | 39 | 75 | 62 | 10 | 33 | 24 | 36 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 39 | 35 | 35 | 38 | 20 | 25 | 41 |
Figure S410. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.013 (Fisher's exact test), Q value = 0.026
Table S411. Gene #57: 'del_17p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 36(17P13.3) MUTATED | 90 | 140 | 47 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 99 | 88 | 46 |
Figure S411. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0249 (Fisher's exact test), Q value = 0.046
Table S412. Gene #57: 'del_17p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 36(17P13.3) MUTATED | 30 | 118 | 69 | 60 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 41 | 80 | 72 | 40 |
Figure S412. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00208 (Fisher's exact test), Q value = 0.0051
Table S413. Gene #57: 'del_17p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 36(17P13.3) MUTATED | 40 | 147 | 47 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 63 | 101 | 36 |
Figure S413. Get High-res Image Gene #57: 'del_17p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S414. Gene #58: 'del_18q21.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 37(18Q21.32) MUTATED | 21 | 88 | 44 | 98 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 48 | 140 | 35 | 42 |
Figure S414. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0472 (Fisher's exact test), Q value = 0.08
Table S415. Gene #58: 'del_18q21.32' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 37(18Q21.32) MUTATED | 17 | 45 | 31 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 27 | 28 | 33 |
Figure S415. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00057 (Fisher's exact test), Q value = 0.0016
Table S416. Gene #58: 'del_18q21.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 37(18Q21.32) MUTATED | 18 | 10 | 35 | 16 | 14 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 22 | 23 | 10 | 15 | 18 |
Figure S416. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S417. Gene #58: 'del_18q21.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 37(18Q21.32) MUTATED | 69 | 121 | 59 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 97 | 74 | 92 |
Figure S417. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S418. Gene #58: 'del_18q21.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 37(18Q21.32) MUTATED | 39 | 63 | 57 | 10 | 17 | 29 | 34 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 39 | 47 | 40 | 38 | 36 | 20 | 43 |
Figure S418. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0202 (Fisher's exact test), Q value = 0.039
Table S419. Gene #58: 'del_18q21.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 37(18Q21.32) MUTATED | 78 | 116 | 54 |
| DEL PEAK 37(18Q21.32) WILD-TYPE | 111 | 112 | 39 |
Figure S419. Get High-res Image Gene #58: 'del_18q21.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S420. Gene #59: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 38(19P13.3) MUTATED | 48 | 85 | 67 | 83 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 21 | 143 | 12 | 57 |
Figure S420. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S421. Gene #59: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 38(19P13.3) MUTATED | 54 | 118 | 76 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 90 | 31 | 86 |
Figure S421. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S422. Gene #59: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 38(19P13.3) MUTATED | 56 | 113 | 111 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 110 | 82 | 40 |
Figure S422. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S423. Gene #59: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 38(19P13.3) MUTATED | 26 | 53 | 64 | 39 | 34 | 42 | 22 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 52 | 57 | 33 | 9 | 19 | 7 | 55 |
Figure S423. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S424. Gene #59: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 38(19P13.3) MUTATED | 81 | 153 | 43 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 108 | 75 | 50 |
Figure S424. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S425. Gene #59: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 38(19P13.3) MUTATED | 36 | 116 | 52 | 73 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 35 | 82 | 89 | 27 |
Figure S425. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00078 (Fisher's exact test), Q value = 0.0021
Table S426. Gene #59: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 38(19P13.3) MUTATED | 47 | 153 | 34 |
| DEL PEAK 38(19P13.3) WILD-TYPE | 56 | 95 | 49 |
Figure S426. Get High-res Image Gene #59: 'del_19p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S427. Gene #60: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 39(19P13.2) MUTATED | 49 | 82 | 66 | 83 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 20 | 146 | 13 | 57 |
Figure S427. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S428. Gene #60: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 39(19P13.2) MUTATED | 50 | 118 | 78 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 94 | 31 | 84 |
Figure S428. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S429. Gene #60: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 39(19P13.2) MUTATED | 54 | 110 | 113 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 112 | 85 | 38 |
Figure S429. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S430. Gene #60: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 39(19P13.2) MUTATED | 25 | 55 | 61 | 39 | 37 | 38 | 22 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 53 | 55 | 36 | 9 | 16 | 11 | 55 |
Figure S430. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S431. Gene #60: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 39(19P13.2) MUTATED | 79 | 151 | 44 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 110 | 77 | 49 |
Figure S431. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S432. Gene #60: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 39(19P13.2) MUTATED | 37 | 114 | 50 | 73 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 34 | 84 | 91 | 27 |
Figure S432. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00078 (Fisher's exact test), Q value = 0.0021
Table S433. Gene #60: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 39(19P13.2) MUTATED | 46 | 153 | 35 |
| DEL PEAK 39(19P13.2) WILD-TYPE | 57 | 95 | 48 |
Figure S433. Get High-res Image Gene #60: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S434. Gene #61: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 40(19P13.2) MUTATED | 50 | 76 | 64 | 80 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 19 | 152 | 15 | 60 |
Figure S434. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S435. Gene #61: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 40(19P13.2) MUTATED | 45 | 115 | 77 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 99 | 34 | 85 |
Figure S435. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S436. Gene #61: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 40(19P13.2) MUTATED | 51 | 103 | 113 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 115 | 92 | 38 |
Figure S436. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S437. Gene #61: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 40(19P13.2) MUTATED | 22 | 52 | 55 | 38 | 40 | 38 | 22 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 56 | 58 | 42 | 10 | 13 | 11 | 55 |
Figure S437. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S438. Gene #61: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 40(19P13.2) MUTATED | 76 | 148 | 40 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 113 | 80 | 53 |
Figure S438. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S439. Gene #61: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 40(19P13.2) MUTATED | 36 | 108 | 48 | 72 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 35 | 90 | 93 | 28 |
Figure S439. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9e-05 (Fisher's exact test), Q value = 3e-04
Table S440. Gene #61: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 40(19P13.2) MUTATED | 43 | 152 | 33 |
| DEL PEAK 40(19P13.2) WILD-TYPE | 60 | 96 | 50 |
Figure S440. Get High-res Image Gene #61: 'del_19p13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S441. Gene #62: 'del_19q11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 41(19Q11) MUTATED | 24 | 37 | 19 | 54 |
| DEL PEAK 41(19Q11) WILD-TYPE | 45 | 191 | 60 | 86 |
Figure S441. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00072 (Fisher's exact test), Q value = 0.002
Table S442. Gene #62: 'del_19q11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 41(19Q11) MUTATED | 21 | 44 | 51 |
| DEL PEAK 41(19Q11) WILD-TYPE | 123 | 105 | 111 |
Figure S442. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00257 (Fisher's exact test), Q value = 0.0061
Table S443. Gene #62: 'del_19q11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 41(19Q11) MUTATED | 29 | 65 | 39 |
| DEL PEAK 41(19Q11) WILD-TYPE | 137 | 130 | 112 |
Figure S443. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00221 (Fisher's exact test), Q value = 0.0054
Table S444. Gene #62: 'del_19q11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 41(19Q11) MUTATED | 15 | 39 | 31 | 11 | 15 | 14 | 8 |
| DEL PEAK 41(19Q11) WILD-TYPE | 63 | 71 | 66 | 37 | 38 | 35 | 69 |
Figure S444. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00148 (Fisher's exact test), Q value = 0.0038
Table S445. Gene #62: 'del_19q11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 41(19Q11) MUTATED | 31 | 67 | 30 |
| DEL PEAK 41(19Q11) WILD-TYPE | 158 | 161 | 63 |
Figure S445. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00028 (Fisher's exact test), Q value = 0.00082
Table S446. Gene #62: 'del_19q11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 41(19Q11) MUTATED | 13 | 61 | 20 | 34 |
| DEL PEAK 41(19Q11) WILD-TYPE | 58 | 137 | 121 | 66 |
Figure S446. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0443 (Fisher's exact test), Q value = 0.076
Table S447. Gene #62: 'del_19q11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 41(19Q11) MUTATED | 18 | 74 | 19 |
| DEL PEAK 41(19Q11) WILD-TYPE | 85 | 174 | 64 |
Figure S447. Get High-res Image Gene #62: 'del_19q11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S448. Gene #63: 'del_19q13.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 42(19Q13.33) MUTATED | 30 | 52 | 38 | 74 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 39 | 176 | 41 | 66 |
Figure S448. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S449. Gene #63: 'del_19q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 42(19Q13.33) MUTATED | 25 | 72 | 66 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 119 | 77 | 96 |
Figure S449. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S450. Gene #63: 'del_19q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 42(19Q13.33) MUTATED | 38 | 85 | 68 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 128 | 110 | 83 |
Figure S450. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S451. Gene #63: 'del_19q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 42(19Q13.33) MUTATED | 19 | 46 | 45 | 23 | 24 | 23 | 11 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 59 | 64 | 52 | 25 | 29 | 26 | 66 |
Figure S451. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S452. Gene #63: 'del_19q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 42(19Q13.33) MUTATED | 47 | 107 | 35 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 142 | 121 | 58 |
Figure S452. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S453. Gene #63: 'del_19q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 42(19Q13.33) MUTATED | 22 | 87 | 28 | 52 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 49 | 111 | 113 | 48 |
Figure S453. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0114 (Fisher's exact test), Q value = 0.024
Table S454. Gene #63: 'del_19q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 42(19Q13.33) MUTATED | 27 | 103 | 25 |
| DEL PEAK 42(19Q13.33) WILD-TYPE | 76 | 145 | 58 |
Figure S454. Get High-res Image Gene #63: 'del_19q13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S455. Gene #64: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 43(20P13) MUTATED | 10 | 40 | 24 | 57 |
| DEL PEAK 43(20P13) WILD-TYPE | 59 | 188 | 55 | 83 |
Figure S455. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00058 (Fisher's exact test), Q value = 0.0016
Table S456. Gene #64: 'del_20p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 43(20P13) MUTATED | 32 | 26 | 58 |
| DEL PEAK 43(20P13) WILD-TYPE | 112 | 123 | 104 |
Figure S456. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00344 (Fisher's exact test), Q value = 0.008
Table S457. Gene #64: 'del_20p13' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 43(20P13) MUTATED | 6 | 30 | 15 |
| DEL PEAK 43(20P13) WILD-TYPE | 38 | 43 | 49 |
Figure S457. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00041 (Fisher's exact test), Q value = 0.0012
Table S458. Gene #64: 'del_20p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 43(20P13) MUTATED | 15 | 2 | 21 | 7 | 6 |
| DEL PEAK 43(20P13) WILD-TYPE | 25 | 31 | 24 | 24 | 26 |
Figure S458. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S459. Gene #64: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 43(20P13) MUTATED | 39 | 72 | 19 |
| DEL PEAK 43(20P13) WILD-TYPE | 127 | 123 | 132 |
Figure S459. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S460. Gene #64: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 43(20P13) MUTATED | 23 | 44 | 20 | 0 | 10 | 16 | 17 |
| DEL PEAK 43(20P13) WILD-TYPE | 55 | 66 | 77 | 48 | 43 | 33 | 60 |
Figure S460. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0146 (Fisher's exact test), Q value = 0.029
Table S461. Gene #64: 'del_20p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 43(20P13) MUTATED | 15 | 65 | 26 |
| DEL PEAK 43(20P13) WILD-TYPE | 88 | 183 | 57 |
Figure S461. Get High-res Image Gene #64: 'del_20p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0293 (Fisher's exact test), Q value = 0.053
Table S462. Gene #65: 'del_20q13.12' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 44(20Q13.12) MUTATED | 3 | 0 | 3 | 0 |
| DEL PEAK 44(20Q13.12) WILD-TYPE | 2 | 9 | 9 | 6 |
Figure S462. Get High-res Image Gene #65: 'del_20q13.12' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00426 (Fisher's exact test), Q value = 0.0097
Table S463. Gene #65: 'del_20q13.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 44(20Q13.12) MUTATED | 18 | 15 | 6 | 12 | 9 | 12 | 8 |
| DEL PEAK 44(20Q13.12) WILD-TYPE | 60 | 95 | 91 | 36 | 44 | 37 | 69 |
Figure S463. Get High-res Image Gene #65: 'del_20q13.12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0452 (Fisher's exact test), Q value = 0.077
Table S464. Gene #65: 'del_20q13.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 44(20Q13.12) MUTATED | 28 | 30 | 7 |
| DEL PEAK 44(20Q13.12) WILD-TYPE | 117 | 168 | 84 |
Figure S464. Get High-res Image Gene #65: 'del_20q13.12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S465. Gene #66: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 45(21Q11.2) MUTATED | 38 | 60 | 45 | 42 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 31 | 168 | 34 | 98 |
Figure S465. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0272 (Fisher's exact test), Q value = 0.05
Table S466. Gene #66: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 45(21Q11.2) MUTATED | 38 | 61 | 59 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 106 | 88 | 103 |
Figure S466. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00708 (Fisher's exact test), Q value = 0.015
Table S467. Gene #66: 'del_21q11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 44 | 73 | 64 |
| DEL PEAK 45(21Q11.2) MUTATED | 8 | 31 | 29 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 36 | 42 | 35 |
Figure S467. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S468. Gene #66: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 45(21Q11.2) MUTATED | 28 | 77 | 77 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 138 | 118 | 74 |
Figure S468. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S469. Gene #66: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 45(21Q11.2) MUTATED | 11 | 39 | 41 | 12 | 35 | 22 | 22 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 67 | 71 | 56 | 36 | 18 | 27 | 55 |
Figure S469. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S470. Gene #66: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 45(21Q11.2) MUTATED | 46 | 109 | 26 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 143 | 119 | 67 |
Figure S470. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00018 (Fisher's exact test), Q value = 0.00056
Table S471. Gene #66: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 45(21Q11.2) MUTATED | 17 | 76 | 37 | 51 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 54 | 122 | 104 | 49 |
Figure S471. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00028 (Fisher's exact test), Q value = 0.00082
Table S472. Gene #66: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 45(21Q11.2) MUTATED | 22 | 106 | 23 |
| DEL PEAK 45(21Q11.2) WILD-TYPE | 81 | 142 | 60 |
Figure S472. Get High-res Image Gene #66: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.025 (Fisher's exact test), Q value = 0.047
Table S473. Gene #67: 'del_22q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 5 | 9 | 12 | 6 |
| DEL PEAK 46(22Q13.32) MUTATED | 3 | 7 | 2 | 4 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 2 | 2 | 10 | 2 |
Figure S473. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S474. Gene #67: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 46(22Q13.32) MUTATED | 52 | 72 | 45 | 86 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 17 | 156 | 34 | 54 |
Figure S474. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S475. Gene #67: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 46(22Q13.32) MUTATED | 41 | 94 | 90 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 103 | 55 | 72 |
Figure S475. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S476. Gene #67: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 46(22Q13.32) MUTATED | 53 | 113 | 86 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 113 | 82 | 65 |
Figure S476. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S477. Gene #67: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 46(22Q13.32) MUTATED | 26 | 67 | 54 | 15 | 42 | 28 | 20 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 52 | 43 | 43 | 33 | 11 | 21 | 57 |
Figure S477. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S478. Gene #67: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 189 | 228 | 93 |
| DEL PEAK 46(22Q13.32) MUTATED | 67 | 139 | 45 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 122 | 89 | 48 |
Figure S478. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 7.9e-05
Table S479. Gene #67: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 71 | 198 | 141 | 100 |
| DEL PEAK 46(22Q13.32) MUTATED | 24 | 116 | 49 | 62 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 47 | 82 | 92 | 38 |
Figure S479. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0152 (Fisher's exact test), Q value = 0.031
Table S480. Gene #67: 'del_22q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 145 | 198 | 91 |
| DEL PEAK 46(22Q13.32) MUTATED | 70 | 110 | 34 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 75 | 88 | 57 |
Figure S480. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S481. Gene #67: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 103 | 248 | 83 |
| DEL PEAK 46(22Q13.32) MUTATED | 34 | 145 | 35 |
| DEL PEAK 46(22Q13.32) WILD-TYPE | 69 | 103 | 48 |
Figure S481. Get High-res Image Gene #67: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
Table S482. Gene #68: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 69 | 228 | 79 | 140 |
| DEL PEAK 47(XP22.2) MUTATED | 18 | 37 | 21 | 67 |
| DEL PEAK 47(XP22.2) WILD-TYPE | 51 | 191 | 58 | 73 |
Figure S482. Get High-res Image Gene #68: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0163 (Fisher's exact test), Q value = 0.032
Table S483. Gene #68: 'del_xp22.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 144 | 149 | 162 |
| DEL PEAK 47(XP22.2) MUTATED | 28 | 41 | 55 |
| DEL PEAK 47(XP22.2) WILD-TYPE | 116 | 108 | 107 |
Figure S483. Get High-res Image Gene #68: 'del_xp22.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.01 (Fisher's exact test), Q value = 0.021
Table S484. Gene #68: 'del_xp22.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 40 | 33 | 45 | 31 | 32 |
| DEL PEAK 47(XP22.2) MUTATED | 7 | 3 | 19 | 6 | 9 |
| DEL PEAK 47(XP22.2) WILD-TYPE | 33 | 30 | 26 | 25 | 23 |
Figure S484. Get High-res Image Gene #68: 'del_xp22.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.0112 (Fisher's exact test), Q value = 0.023
Table S485. Gene #68: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 166 | 195 | 151 |
| DEL PEAK 47(XP22.2) MUTATED | 39 | 69 | 34 |
| DEL PEAK 47(XP22.2) WILD-TYPE | 127 | 126 | 117 |
Figure S485. Get High-res Image Gene #68: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00018
Table S486. Gene #68: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 78 | 110 | 97 | 48 | 53 | 49 | 77 |
| DEL PEAK 47(XP22.2) MUTATED | 23 | 48 | 33 | 9 | 8 | 8 | 13 |
| DEL PEAK 47(XP22.2) WILD-TYPE | 55 | 62 | 64 | 39 | 45 | 41 | 64 |
Figure S486. Get High-res Image Gene #68: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/15092520/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/15111023/LUAD-TP.transferedmergedcluster.txt
-
Number of patients = 516
-
Number of significantly focal cnvs = 68
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.