[1] "started"
[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/analysis.results.RData"
[1] "APOBEC"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
                                    V1.D 
                         "Time to Death" 
                                      V2 
                        "YEARS_TO_BIRTH" 
                                      V3 
                 "NEOPLASM_DISEASESTAGE" 
                                      V4 
                     "PATHOLOGY_T_STAGE" 
                                      V5 
                     "PATHOLOGY_N_STAGE" 
                                      V6 
                     "PATHOLOGY_M_STAGE" 
                                      V7 
                                "GENDER" 
                                      V8 
           "KARNOFSKY_PERFORMANCE_SCORE" 
                                      V9 
                     "HISTOLOGICAL_TYPE" 
                                     V10 
"RADIATIONS_RADIATION_REGIMENINDICATION" 
                                     V11 
              "NUMBER_PACK_YEARS_SMOKED" 
                                     V12 
         "YEAR_OF_TOBACCO_SMOKING_ONSET" 
                                     V13 
             "COMPLETENESS_OF_RESECTION" 
                                     V14 
                                  "RACE" 
                                     V15 
                             "ETHNICITY" 
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V3.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V5.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V6.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V7.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V8.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V9.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V10.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V11.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V13.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V14.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D1V15.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V3.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V5.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V6.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V7.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V8.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V9.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V10.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V11.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V13.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V14.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/LUSC-TP/15173376/D2V15.png"
[1] TRUE
