This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 83 focal events and 12 molecular subtypes across 501 patients, 511 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q21.2 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_2p16.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_2q31.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q26.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4q12 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5p12 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_6p12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7p11.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_7q21.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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amp_8q24.21 cnv correlated to 'CN_CNMF'.
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amp_9p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12p13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q15 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q34 cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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amp_14q13.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_14q32.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_15q26.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q25.1 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_18p11.32 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_18q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20p12.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q11.21 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_22q11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.11 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2p25.3 cnv correlated to 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q37.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_3p13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4p15.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q32.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q31.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_6q22.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_7q11.22 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_7q36.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p21.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_9q21.11 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p15.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_11q25 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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del_13q12.11 cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q11.2 cnv correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
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del_15q21.1 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_16p13.3 cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p11.2 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_17q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q25.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'CN_CNMF'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_19q13.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_21q11.2 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q11.21 cnv correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_xp22.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp11.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xq22.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 83 focal events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 511 significant findings detected.
|
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| amp 3q26 33 | 452 (90%) | 49 |
0.00044 (0.00198) |
0.00059 (0.00254) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.268 (0.375) |
0.0322 (0.0669) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00013 (0.000771) |
1e-05 (8.51e-05) |
0.0186 (0.0425) |
4e-05 (0.000271) |
| del 1p36 11 | 228 (46%) | 273 |
3e-05 (0.000209) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.0541 (0.104) |
0.00338 (0.0103) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
1e-05 (8.51e-05) |
| del 1p13 1 | 221 (44%) | 280 |
0.00016 (0.000895) |
2e-05 (0.000151) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.0231 (0.0508) |
0.204 (0.304) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00042 (0.00192) |
2e-05 (0.000151) |
| amp 2p16 1 | 275 (55%) | 226 |
0.0014 (0.00507) |
0.00023 (0.00121) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.95 (0.96) |
0.67 (0.75) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00038 (0.00179) |
0.00055 (0.00238) |
0.0312 (0.0651) |
3e-05 (0.000209) |
| amp 18q11 2 | 151 (30%) | 350 |
0.00048 (0.00211) |
0.015 (0.0359) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.255 (0.364) |
0.748 (0.813) |
1e-05 (8.51e-05) |
5e-05 (0.000332) |
0.0119 (0.0297) |
0.00305 (0.00961) |
0.0498 (0.097) |
4e-05 (0.000271) |
| del 2q37 1 | 159 (32%) | 342 |
0.00315 (0.0098) |
0.00071 (0.00298) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.386 (0.495) |
0.188 (0.287) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
| del 4q32 3 | 329 (66%) | 172 |
0.00651 (0.0177) |
0.0194 (0.044) |
1e-05 (8.51e-05) |
8e-05 (0.000498) |
0.0682 (0.126) |
0.778 (0.832) |
1e-05 (8.51e-05) |
0.00029 (0.00143) |
0.00073 (0.00303) |
0.00252 (0.00828) |
0.00393 (0.0118) |
1e-05 (8.51e-05) |
| del 10q23 31 | 268 (53%) | 233 |
0.00318 (0.00987) |
0.00091 (0.00358) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.15 (0.241) |
0.247 (0.357) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00126 (0.00467) |
2e-05 (0.000151) |
0.0222 (0.0492) |
0.00028 (0.00139) |
| amp 1q21 2 | 258 (51%) | 243 |
0.0394 (0.0791) |
0.1 (0.176) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.182 (0.279) |
0.0741 (0.136) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.00087 (0.00344) |
0.00412 (0.0121) |
| amp 2q31 2 | 172 (34%) | 329 |
0.0196 (0.0442) |
0.0225 (0.0498) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.726 (0.796) |
0.636 (0.722) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00273 (0.00877) |
0.255 (0.364) |
0.00333 (0.0102) |
0.00044 (0.00198) |
| amp 7q21 2 | 264 (53%) | 237 |
0.102 (0.178) |
0.015 (0.0359) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.0765 (0.139) |
0.559 (0.659) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00017 (0.00093) |
0.00096 (0.00373) |
0.0016 (0.00565) |
0.00079 (0.00319) |
| amp 9p13 3 | 136 (27%) | 365 |
0.124 (0.207) |
0.717 (0.79) |
0.00181 (0.00628) |
0.00256 (0.00839) |
0.0688 (0.127) |
0.00302 (0.00955) |
0.00145 (0.00519) |
0.00135 (0.00494) |
0.00665 (0.0179) |
0.00335 (0.0103) |
0.0167 (0.0388) |
0.0126 (0.0311) |
| amp 15q26 3 | 179 (36%) | 322 |
0.362 (0.473) |
0.0503 (0.0978) |
1e-05 (8.51e-05) |
0.00033 (0.00159) |
0.459 (0.569) |
0.027 (0.0579) |
3e-05 (0.000209) |
0.00286 (0.00916) |
0.0392 (0.0789) |
0.00638 (0.0175) |
0.00716 (0.0192) |
0.00433 (0.0126) |
| amp 17q25 1 | 236 (47%) | 265 |
0.00839 (0.0218) |
0.137 (0.224) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.402 (0.509) |
0.518 (0.623) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00039 (0.00182) |
0.00468 (0.0135) |
0.00122 (0.00453) |
0.00021 (0.00111) |
| del 3p13 | 434 (87%) | 67 |
0.253 (0.363) |
0.357 (0.47) |
1e-05 (8.51e-05) |
6e-05 (0.000393) |
0.784 (0.835) |
0.00111 (0.00419) |
0.00076 (0.0031) |
0.00082 (0.00327) |
0.00206 (0.00696) |
1e-05 (8.51e-05) |
0.00075 (0.00309) |
0.00019 (0.00102) |
| del 3p12 3 | 427 (85%) | 74 |
0.277 (0.383) |
0.226 (0.331) |
1e-05 (8.51e-05) |
3e-05 (0.000209) |
0.937 (0.949) |
0.00153 (0.00542) |
0.00044 (0.00198) |
0.00493 (0.0141) |
0.0233 (0.0512) |
1e-05 (8.51e-05) |
0.0004 (0.00184) |
0.0011 (0.00417) |
| del 3p12 3 | 421 (84%) | 80 |
0.228 (0.333) |
0.394 (0.502) |
1e-05 (8.51e-05) |
0.00012 (0.000716) |
0.969 (0.975) |
0.00653 (0.0177) |
0.00273 (0.00877) |
0.00769 (0.0203) |
0.0257 (0.0557) |
3e-05 (0.000209) |
0.00221 (0.00739) |
0.00301 (0.00955) |
| del 4p15 2 | 317 (63%) | 184 |
0.00017 (0.00093) |
3e-05 (0.000209) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.775 (0.831) |
0.0642 (0.12) |
0.00014 (0.00082) |
1e-05 (8.51e-05) |
0.00204 (0.00691) |
0.052 (0.101) |
0.00019 (0.00102) |
1e-05 (8.51e-05) |
| del 4q22 1 | 285 (57%) | 216 |
0.00297 (0.00945) |
0.00474 (0.0136) |
1e-05 (8.51e-05) |
0.00103 (0.00393) |
0.118 (0.2) |
0.514 (0.619) |
0.00022 (0.00116) |
0.0147 (0.0353) |
0.0164 (0.0383) |
0.00568 (0.0159) |
0.0557 (0.107) |
0.0178 (0.0408) |
| del 9q21 11 | 251 (50%) | 250 |
0.00027 (0.00135) |
5e-05 (0.000332) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.561 (0.66) |
0.144 (0.234) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.051 (0.099) |
0.00963 (0.0247) |
| del 11p15 5 | 245 (49%) | 256 |
0.00048 (0.00211) |
0.0118 (0.0295) |
1e-05 (8.51e-05) |
0.00309 (0.00971) |
0.00034 (0.00162) |
0.00026 (0.00132) |
0.00664 (0.0179) |
0.0818 (0.147) |
0.00064 (0.00274) |
0.0868 (0.156) |
0.735 (0.802) |
0.00403 (0.012) |
| del 17q11 2 | 132 (26%) | 369 |
0.00012 (0.000716) |
8e-05 (0.000498) |
1e-05 (8.51e-05) |
6e-05 (0.000393) |
0.388 (0.495) |
0.564 (0.661) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.00405 (0.012) |
0.00129 (0.00476) |
0.274 (0.381) |
0.00034 (0.00162) |
| del xq22 3 | 114 (23%) | 387 |
0.0213 (0.0477) |
0.01 (0.0256) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.865 (0.9) |
0.89 (0.916) |
0.00117 (0.00436) |
0.333 (0.447) |
0.00573 (0.0159) |
0.00014 (0.00082) |
0.00854 (0.0221) |
0.00031 (0.00151) |
| amp 11q13 3 | 185 (37%) | 316 |
0.0469 (0.0927) |
0.0345 (0.0708) |
1e-05 (8.51e-05) |
0.00073 (0.00303) |
0.26 (0.367) |
0.337 (0.452) |
0.0307 (0.0642) |
0.063 (0.119) |
0.00133 (0.00489) |
0.00517 (0.0147) |
0.191 (0.291) |
0.00273 (0.00877) |
| amp 12p13 33 | 255 (51%) | 246 |
0.00792 (0.0207) |
0.0217 (0.0484) |
1e-05 (8.51e-05) |
0.0049 (0.014) |
0.353 (0.469) |
0.635 (0.721) |
1e-05 (8.51e-05) |
0.00162 (0.00568) |
0.134 (0.221) |
0.00273 (0.00877) |
0.251 (0.361) |
0.00602 (0.0167) |
| amp 18p11 32 | 179 (36%) | 322 |
0.0436 (0.0867) |
0.0044 (0.0128) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.504 (0.612) |
0.979 (0.982) |
0.0409 (0.0819) |
0.00148 (0.00528) |
0.019 (0.0432) |
0.0963 (0.17) |
0.0732 (0.135) |
0.00027 (0.00135) |
| del 2q22 1 | 131 (26%) | 370 |
0.32 (0.434) |
0.333 (0.447) |
1e-05 (8.51e-05) |
0.00072 (0.00301) |
0.384 (0.493) |
0.422 (0.532) |
0.00219 (0.00734) |
0.00735 (0.0195) |
0.00016 (0.000895) |
0.00048 (0.00211) |
0.0193 (0.0438) |
0.0242 (0.0528) |
| del 4q35 2 | 331 (66%) | 170 |
0.0691 (0.127) |
0.204 (0.305) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.36 (0.472) |
0.861 (0.897) |
3e-05 (0.000209) |
0.00344 (0.0105) |
0.00054 (0.00235) |
0.00743 (0.0197) |
0.0485 (0.095) |
1e-05 (8.51e-05) |
| del 6q26 | 134 (27%) | 367 |
0.0416 (0.0829) |
0.00462 (0.0134) |
0.00021 (0.00111) |
8e-05 (0.000498) |
0.921 (0.94) |
0.658 (0.739) |
0.00046 (0.00206) |
0.00607 (0.0167) |
0.0173 (0.04) |
0.0735 (0.135) |
0.0328 (0.068) |
0.103 (0.178) |
| del 9p23 | 332 (66%) | 169 |
0.0104 (0.0263) |
0.00184 (0.00636) |
1e-05 (8.51e-05) |
0.0304 (0.0641) |
0.192 (0.291) |
0.169 (0.263) |
0.00017 (0.00093) |
0.00098 (0.0038) |
0.0107 (0.0271) |
0.00015 (0.000864) |
0.623 (0.712) |
0.13 (0.216) |
| del 10p15 2 | 219 (44%) | 282 |
0.262 (0.368) |
0.466 (0.576) |
2e-05 (0.000151) |
1e-05 (8.51e-05) |
0.147 (0.239) |
0.142 (0.232) |
1e-05 (8.51e-05) |
0.00012 (0.000716) |
4e-05 (0.000271) |
1e-05 (8.51e-05) |
0.0239 (0.0523) |
0.0102 (0.026) |
| del 14q11 2 | 175 (35%) | 326 |
0.0379 (0.0769) |
0.0351 (0.0719) |
0.539 (0.639) |
0.799 (0.846) |
0.261 (0.368) |
0.166 (0.259) |
0.00016 (0.000895) |
0.00016 (0.000895) |
0.0233 (0.0512) |
0.00976 (0.0249) |
0.00076 (0.0031) |
0.0341 (0.0704) |
| del xp21 1 | 152 (30%) | 349 |
0.454 (0.565) |
0.481 (0.59) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.272 (0.379) |
0.751 (0.814) |
7e-05 (0.000453) |
0.00101 (0.00388) |
0.00605 (0.0167) |
0.00142 (0.00512) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
| del xp11 3 | 149 (30%) | 352 |
0.0974 (0.171) |
0.399 (0.507) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.107 (0.184) |
0.0634 (0.119) |
0.00012 (0.000716) |
0.00195 (0.00667) |
0.00017 (0.00093) |
0.00047 (0.00209) |
2e-05 (0.000151) |
1e-05 (8.51e-05) |
| amp 7p11 2 | 256 (51%) | 245 |
0.115 (0.195) |
0.0307 (0.0642) |
1e-05 (8.51e-05) |
0.0042 (0.0123) |
0.698 (0.778) |
0.595 (0.687) |
0.00196 (0.00669) |
2e-05 (0.000151) |
0.155 (0.247) |
0.0466 (0.0924) |
0.0443 (0.0878) |
0.33 (0.445) |
| amp 14q32 33 | 158 (32%) | 343 |
0.0302 (0.0638) |
0.0153 (0.0364) |
0.00186 (0.00641) |
0.00069 (0.00291) |
0.0256 (0.0556) |
0.402 (0.509) |
0.00077 (0.00313) |
0.0004 (0.00184) |
0.519 (0.624) |
0.429 (0.539) |
0.0544 (0.104) |
0.127 (0.212) |
| del 3p25 3 | 398 (79%) | 103 |
0.385 (0.494) |
0.199 (0.3) |
0.00172 (0.00599) |
8e-05 (0.000498) |
0.884 (0.913) |
0.228 (0.333) |
0.00287 (0.00916) |
0.00029 (0.00143) |
0.00826 (0.0215) |
0.00015 (0.000864) |
0.016 (0.0375) |
0.0798 (0.144) |
| del 5q12 1 | 369 (74%) | 132 |
0.487 (0.596) |
0.433 (0.544) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.936 (0.949) |
0.462 (0.572) |
0.00201 (0.00683) |
0.00151 (0.00537) |
0.0114 (0.0286) |
3e-05 (0.000209) |
0.0637 (0.12) |
0.00313 (0.00977) |
| del 5q31 1 | 386 (77%) | 115 |
0.159 (0.252) |
0.276 (0.382) |
1e-05 (8.51e-05) |
2e-05 (0.000151) |
0.371 (0.481) |
0.524 (0.626) |
0.0159 (0.0373) |
0.00728 (0.0194) |
0.00386 (0.0117) |
1e-05 (8.51e-05) |
0.0794 (0.144) |
0.00102 (0.00391) |
| del 17q25 3 | 102 (20%) | 399 |
0.00479 (0.0137) |
0.012 (0.0298) |
5e-05 (0.000332) |
0.0168 (0.039) |
0.62 (0.709) |
0.994 (0.994) |
0.00137 (0.005) |
0.00143 (0.00514) |
0.644 (0.729) |
0.0134 (0.0328) |
0.773 (0.831) |
0.104 (0.18) |
| amp 6q12 | 152 (30%) | 349 |
0.938 (0.95) |
0.731 (0.8) |
3e-05 (0.000209) |
0.0023 (0.00764) |
0.503 (0.611) |
0.602 (0.691) |
0.00094 (0.00367) |
0.00562 (0.0158) |
0.745 (0.81) |
0.0221 (0.0492) |
0.0526 (0.102) |
0.00612 (0.0168) |
| amp 12q15 | 178 (36%) | 323 |
0.133 (0.219) |
0.344 (0.46) |
3e-05 (0.000209) |
0.00778 (0.0204) |
0.765 (0.824) |
0.436 (0.546) |
0.00572 (0.0159) |
0.0109 (0.0275) |
0.359 (0.472) |
0.644 (0.729) |
0.0237 (0.0518) |
0.0036 (0.0109) |
| amp 19q12 | 224 (45%) | 277 |
0.369 (0.48) |
0.646 (0.73) |
1e-05 (8.51e-05) |
0.0199 (0.0449) |
0.232 (0.337) |
0.357 (0.47) |
0.00263 (0.00859) |
0.0285 (0.0608) |
0.722 (0.794) |
0.566 (0.662) |
0.00755 (0.0199) |
0.00232 (0.00768) |
| amp 20p12 2 | 280 (56%) | 221 |
0.00108 (0.00411) |
0.00235 (0.00775) |
1e-05 (8.51e-05) |
0.00039 (0.00182) |
0.903 (0.928) |
0.33 (0.445) |
0.0177 (0.0407) |
0.0155 (0.0368) |
0.0879 (0.157) |
0.647 (0.73) |
0.574 (0.668) |
0.531 (0.633) |
| amp xq28 | 124 (25%) | 377 |
0.887 (0.915) |
0.871 (0.904) |
0.0117 (0.0291) |
0.0355 (0.0726) |
0.0369 (0.0751) |
0.0762 (0.139) |
0.0475 (0.0934) |
0.307 (0.419) |
0.203 (0.303) |
0.163 (0.256) |
0.0178 (0.0408) |
0.0324 (0.0672) |
| del 6p25 3 | 134 (27%) | 367 |
0.459 (0.569) |
0.283 (0.388) |
0.00027 (0.00135) |
1e-05 (8.51e-05) |
0.202 (0.302) |
0.00673 (0.0181) |
1e-05 (8.51e-05) |
1e-05 (8.51e-05) |
0.136 (0.223) |
0.00082 (0.00327) |
0.115 (0.195) |
0.184 (0.282) |
| del 6q22 31 | 122 (24%) | 379 |
0.0388 (0.0782) |
0.00313 (0.00977) |
0.00019 (0.00102) |
0.00074 (0.00306) |
0.477 (0.586) |
0.509 (0.615) |
0.00084 (0.00333) |
0.017 (0.0393) |
0.26 (0.367) |
0.212 (0.314) |
0.197 (0.296) |
0.372 (0.481) |
| del 7q36 3 | 104 (21%) | 397 |
0.171 (0.265) |
0.0487 (0.0951) |
0.00407 (0.0121) |
0.275 (0.381) |
0.974 (0.978) |
0.1 (0.176) |
0.00026 (0.00132) |
0.00114 (0.00427) |
0.306 (0.418) |
0.00412 (0.0121) |
0.777 (0.832) |
0.047 (0.0927) |
| del 11q22 1 | 162 (32%) | 339 |
0.563 (0.661) |
0.254 (0.364) |
0.00138 (0.00502) |
0.00079 (0.00319) |
0.149 (0.24) |
0.965 (0.973) |
0.014 (0.034) |
0.0384 (0.0776) |
0.00394 (0.0118) |
0.028 (0.0598) |
0.214 (0.316) |
0.148 (0.239) |
| del 19q13 32 | 149 (30%) | 352 |
0.827 (0.869) |
0.592 (0.684) |
1e-05 (8.51e-05) |
0.0001 (0.000615) |
0.164 (0.257) |
0.535 (0.636) |
0.0143 (0.0344) |
0.00718 (0.0192) |
0.0376 (0.0764) |
0.507 (0.613) |
0.0137 (0.0334) |
0.153 (0.246) |
| del 21q22 3 | 281 (56%) | 220 |
0.774 (0.831) |
0.129 (0.215) |
1e-05 (8.51e-05) |
0.0055 (0.0155) |
0.511 (0.617) |
0.0597 (0.114) |
0.153 (0.246) |
0.0759 (0.139) |
0.0103 (0.0261) |
0.0005 (0.00218) |
0.0144 (0.0346) |
0.0475 (0.0934) |
| del 22q13 32 | 128 (26%) | 373 |
0.00024 (0.00124) |
0.0134 (0.0328) |
0.224 (0.329) |
0.027 (0.0579) |
0.401 (0.509) |
0.216 (0.318) |
8e-05 (0.000498) |
1e-05 (8.51e-05) |
0.274 (0.381) |
0.00047 (0.00209) |
0.522 (0.624) |
0.163 (0.256) |
| del xp22 2 | 155 (31%) | 346 |
0.714 (0.788) |
0.525 (0.627) |
3e-05 (0.000209) |
2e-05 (0.000151) |
0.356 (0.47) |
0.715 (0.788) |
0.012 (0.0298) |
0.00943 (0.0242) |
0.119 (0.201) |
0.111 (0.19) |
0.00024 (0.00124) |
4e-05 (0.000271) |
| amp 19q13 2 | 234 (47%) | 267 |
0.344 (0.46) |
0.257 (0.365) |
1e-05 (8.51e-05) |
0.0267 (0.0575) |
0.371 (0.481) |
0.491 (0.6) |
0.00521 (0.0148) |
0.0803 (0.145) |
0.793 (0.842) |
0.503 (0.611) |
0.0306 (0.0642) |
0.0137 (0.0333) |
| amp 22q11 21 | 256 (51%) | 245 |
0.114 (0.195) |
0.159 (0.252) |
0.00015 (0.000864) |
0.00037 (0.00175) |
0.857 (0.894) |
0.616 (0.705) |
8e-05 (0.000498) |
0.00024 (0.00124) |
0.164 (0.257) |
0.0416 (0.0829) |
0.589 (0.682) |
0.276 (0.382) |
| del 9p21 3 | 388 (77%) | 113 |
0.196 (0.296) |
0.259 (0.367) |
1e-05 (8.51e-05) |
0.266 (0.373) |
0.81 (0.856) |
0.597 (0.688) |
0.00063 (0.0027) |
0.0158 (0.0372) |
0.452 (0.563) |
0.0115 (0.0289) |
0.378 (0.487) |
0.0228 (0.0503) |
| del 16q23 1 | 210 (42%) | 291 |
0.929 (0.945) |
0.114 (0.195) |
0.0142 (0.0344) |
0.294 (0.402) |
0.353 (0.469) |
0.849 (0.888) |
0.0665 (0.124) |
0.0381 (0.0772) |
0.00645 (0.0176) |
0.442 (0.553) |
0.0003 (0.00146) |
0.00038 (0.00179) |
| del 9p21 1 | 326 (65%) | 175 |
0.139 (0.227) |
0.284 (0.39) |
1e-05 (8.51e-05) |
0.13 (0.216) |
0.709 (0.784) |
0.63 (0.718) |
0.0003 (0.00146) |
0.00033 (0.00159) |
0.357 (0.47) |
0.00835 (0.0217) |
0.153 (0.246) |
0.357 (0.47) |
| del 13q14 2 | 344 (69%) | 157 |
0.119 (0.201) |
0.0992 (0.174) |
0.00331 (0.0102) |
0.0303 (0.064) |
0.705 (0.783) |
0.727 (0.796) |
0.429 (0.539) |
0.574 (0.668) |
0.0738 (0.135) |
0.147 (0.239) |
0.00162 (0.00568) |
0.0195 (0.044) |
| del 17p11 2 | 272 (54%) | 229 |
0.244 (0.353) |
0.113 (0.194) |
0.0004 (0.00184) |
0.66 (0.74) |
0.157 (0.25) |
0.00782 (0.0205) |
0.129 (0.214) |
0.0158 (0.0372) |
0.31 (0.421) |
0.0272 (0.0582) |
0.231 (0.336) |
0.154 (0.246) |
| del 21q11 2 | 246 (49%) | 255 |
0.564 (0.661) |
0.561 (0.66) |
7e-05 (0.000453) |
0.205 (0.305) |
0.983 (0.984) |
0.726 (0.796) |
0.0855 (0.154) |
0.468 (0.577) |
0.00081 (0.00325) |
0.00021 (0.00111) |
0.185 (0.283) |
0.0147 (0.0352) |
| amp 4q12 | 119 (24%) | 382 |
0.877 (0.908) |
0.882 (0.912) |
0.00166 (0.0058) |
0.175 (0.27) |
0.295 (0.404) |
0.135 (0.222) |
0.0621 (0.117) |
0.58 (0.674) |
0.0329 (0.068) |
0.349 (0.466) |
0.394 (0.502) |
0.0365 (0.0745) |
| amp 5p15 33 | 387 (77%) | 114 |
0.85 (0.888) |
0.799 (0.846) |
1e-05 (8.51e-05) |
0.00222 (0.00739) |
0.404 (0.511) |
0.372 (0.481) |
0.489 (0.597) |
0.0642 (0.12) |
0.538 (0.638) |
0.00564 (0.0158) |
0.477 (0.586) |
0.281 (0.386) |
| amp 6p12 1 | 166 (33%) | 335 |
0.653 (0.735) |
0.498 (0.607) |
1e-05 (8.51e-05) |
0.0527 (0.102) |
0.926 (0.943) |
0.546 (0.645) |
0.00066 (0.00281) |
0.0642 (0.12) |
0.57 (0.665) |
0.118 (0.2) |
0.217 (0.319) |
0.00011 (0.000672) |
| amp 14q13 3 | 159 (32%) | 342 |
0.354 (0.469) |
0.0261 (0.0564) |
0.16 (0.253) |
0.302 (0.412) |
0.648 (0.73) |
0.0805 (0.145) |
0.103 (0.178) |
0.00264 (0.00859) |
0.0182 (0.0415) |
0.109 (0.188) |
0.749 (0.813) |
0.839 (0.88) |
| del 2p25 3 | 50 (10%) | 451 |
0.122 (0.205) |
0.457 (0.568) |
0.0896 (0.16) |
0.211 (0.313) |
0.258 (0.365) |
0.363 (0.473) |
0.674 (0.755) |
0.605 (0.693) |
0.00876 (0.0226) |
0.36 (0.472) |
0.0476 (0.0934) |
0.0292 (0.0619) |
| del 7q11 22 | 48 (10%) | 453 |
0.802 (0.848) |
0.699 (0.778) |
0.00113 (0.00425) |
0.473 (0.583) |
0.847 (0.886) |
0.318 (0.431) |
0.00191 (0.00656) |
0.00101 (0.00388) |
0.644 (0.729) |
0.378 (0.487) |
0.657 (0.738) |
0.906 (0.93) |
| del 8p23 2 | 341 (68%) | 160 |
0.586 (0.68) |
0.706 (0.783) |
1e-05 (8.51e-05) |
0.0157 (0.0372) |
0.241 (0.35) |
0.362 (0.473) |
0.112 (0.192) |
0.0927 (0.165) |
0.319 (0.433) |
0.0652 (0.121) |
0.388 (0.495) |
0.0406 (0.0814) |
| del 11q25 | 184 (37%) | 317 |
0.799 (0.846) |
0.706 (0.783) |
0.00215 (0.00723) |
0.0602 (0.114) |
0.174 (0.268) |
0.691 (0.772) |
0.0177 (0.0407) |
0.148 (0.239) |
0.0321 (0.0668) |
0.149 (0.24) |
0.382 (0.491) |
0.125 (0.209) |
| del 13q12 11 | 331 (66%) | 170 |
0.104 (0.18) |
0.569 (0.665) |
0.00396 (0.0118) |
0.162 (0.256) |
0.909 (0.931) |
0.182 (0.279) |
0.814 (0.857) |
0.971 (0.975) |
0.231 (0.337) |
0.381 (0.49) |
0.00425 (0.0124) |
0.00354 (0.0107) |
| del 15q21 1 | 169 (34%) | 332 |
0.452 (0.563) |
0.76 (0.822) |
0.0159 (0.0373) |
0.349 (0.466) |
0.0903 (0.161) |
0.00721 (0.0193) |
0.272 (0.379) |
0.244 (0.353) |
0.00322 (0.00996) |
0.0965 (0.17) |
0.355 (0.47) |
0.168 (0.262) |
| del 19p13 3 | 236 (47%) | 265 |
0.446 (0.557) |
0.233 (0.338) |
9e-05 (0.000557) |
0.928 (0.944) |
0.0936 (0.166) |
0.166 (0.259) |
0.0677 (0.126) |
0.0219 (0.0488) |
0.189 (0.289) |
0.00093 (0.00365) |
0.793 (0.842) |
0.0538 (0.104) |
| amp 5p12 | 354 (71%) | 147 |
0.96 (0.969) |
0.756 (0.819) |
1e-05 (8.51e-05) |
0.00068 (0.00288) |
0.219 (0.322) |
0.935 (0.949) |
0.363 (0.473) |
0.899 (0.924) |
0.71 (0.784) |
0.0775 (0.141) |
0.0646 (0.12) |
0.71 (0.784) |
| amp 8p11 23 | 238 (48%) | 263 |
0.0129 (0.0318) |
0.0921 (0.164) |
0.00016 (0.000895) |
0.0551 (0.105) |
0.19 (0.289) |
0.249 (0.358) |
0.0596 (0.113) |
0.0569 (0.109) |
0.872 (0.904) |
0.175 (0.27) |
0.589 (0.682) |
0.329 (0.445) |
| amp 13q34 | 91 (18%) | 410 |
0.981 (0.983) |
0.833 (0.874) |
0.38 (0.49) |
0.775 (0.831) |
0.871 (0.904) |
0.215 (0.318) |
0.744 (0.81) |
0.105 (0.182) |
0.0134 (0.0328) |
0.0343 (0.0706) |
0.967 (0.974) |
0.465 (0.575) |
| amp 20q11 21 | 306 (61%) | 195 |
0.811 (0.856) |
0.507 (0.613) |
1e-05 (8.51e-05) |
0.00591 (0.0164) |
0.784 (0.835) |
0.737 (0.803) |
0.634 (0.721) |
0.945 (0.956) |
0.272 (0.379) |
0.372 (0.481) |
0.589 (0.682) |
0.202 (0.303) |
| del 15q11 2 | 167 (33%) | 334 |
0.564 (0.661) |
0.521 (0.624) |
0.158 (0.251) |
0.193 (0.292) |
0.0888 (0.159) |
0.0268 (0.0578) |
0.193 (0.292) |
0.0607 (0.115) |
0.0243 (0.053) |
0.54 (0.64) |
0.263 (0.37) |
0.126 (0.211) |
| del 16p13 3 | 187 (37%) | 314 |
0.254 (0.364) |
0.449 (0.56) |
0.00425 (0.0124) |
0.123 (0.207) |
0.21 (0.312) |
0.257 (0.365) |
0.514 (0.619) |
0.916 (0.937) |
0.171 (0.266) |
0.634 (0.721) |
0.00926 (0.0238) |
0.101 (0.176) |
| del 22q11 21 | 95 (19%) | 406 |
0.0299 (0.0634) |
0.0968 (0.17) |
0.141 (0.23) |
0.0958 (0.17) |
0.13 (0.216) |
0.354 (0.469) |
0.156 (0.249) |
0.00026 (0.00132) |
0.734 (0.802) |
0.405 (0.511) |
0.256 (0.364) |
0.144 (0.234) |
| amp 8q24 21 | 352 (70%) | 149 |
0.918 (0.938) |
0.778 (0.832) |
0.0211 (0.0474) |
0.266 (0.373) |
0.825 (0.868) |
0.57 (0.665) |
0.813 (0.857) |
0.548 (0.647) |
0.278 (0.383) |
0.258 (0.365) |
0.844 (0.884) |
0.899 (0.924) |
| del 18q23 | 234 (47%) | 267 |
0.598 (0.688) |
0.172 (0.267) |
0.0054 (0.0153) |
0.249 (0.358) |
0.886 (0.914) |
0.19 (0.289) |
0.791 (0.842) |
0.481 (0.59) |
0.502 (0.611) |
0.538 (0.638) |
0.108 (0.186) |
0.644 (0.729) |
| del 3q11 1 | 79 (16%) | 422 |
0.763 (0.823) |
0.781 (0.834) |
0.223 (0.328) |
0.87 (0.904) |
0.763 (0.823) |
0.603 (0.692) |
0.77 (0.829) |
0.174 (0.268) |
0.923 (0.941) |
0.52 (0.624) |
0.336 (0.45) |
0.734 (0.802) |
| del 12q24 31 | 86 (17%) | 415 |
0.914 (0.936) |
0.597 (0.688) |
0.405 (0.511) |
0.277 (0.383) |
0.198 (0.298) |
0.678 (0.758) |
0.523 (0.625) |
0.694 (0.774) |
0.709 (0.784) |
0.331 (0.447) |
0.394 (0.502) |
0.17 (0.264) |
P value = 0.0394 (Fisher's exact test), Q value = 0.079
Table S1. Gene #1: 'amp_1q21.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 1(1Q21.2) MUTATED | 18 | 37 | 16 | 16 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 24 | 15 | 16 | 12 |
Figure S1. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S2. Gene #1: 'amp_1q21.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 1(1Q21.2) MUTATED | 73 | 122 | 63 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 109 | 44 | 90 |
Figure S2. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S3. Gene #1: 'amp_1q21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 1(1Q21.2) MUTATED | 57 | 81 | 46 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 95 | 41 | 47 |
Figure S3. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S4. Gene #1: 'amp_1q21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 1(1Q21.2) MUTATED | 44 | 106 | 80 | 27 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 69 | 46 | 74 | 52 |
Figure S4. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S5. Gene #1: 'amp_1q21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 1(1Q21.2) MUTATED | 63 | 123 | 71 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 115 | 66 | 60 |
Figure S5. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S6. Gene #1: 'amp_1q21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 1(1Q21.2) MUTATED | 66 | 81 | 41 | 43 | 13 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 55 | 53 | 80 | 19 | 24 |
Figure S6. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S7. Gene #1: 'amp_1q21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 1(1Q21.2) MUTATED | 64 | 67 | 89 | 24 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 25 | 51 | 110 | 45 |
Figure S7. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00087 (Fisher's exact test), Q value = 0.0034
Table S8. Gene #1: 'amp_1q21.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 1(1Q21.2) MUTATED | 30 | 67 | 69 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 59 | 62 | 47 |
Figure S8. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00412 (Fisher's exact test), Q value = 0.012
Table S9. Gene #1: 'amp_1q21.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 1(1Q21.2) MUTATED | 15 | 90 | 61 |
| AMP PEAK 1(1Q21.2) WILD-TYPE | 24 | 61 | 83 |
Figure S9. Get High-res Image Gene #1: 'amp_1q21.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0014 (Fisher's exact test), Q value = 0.0051
Table S10. Gene #2: 'amp_2p16.1' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 2(2P16.1) MUTATED | 19 | 40 | 13 | 13 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 23 | 12 | 19 | 15 |
Figure S10. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.0012
Table S11. Gene #2: 'amp_2p16.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 2(2P16.1) MUTATED | 24 | 42 | 19 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 23 | 14 | 32 |
Figure S11. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S12. Gene #2: 'amp_2p16.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 2(2P16.1) MUTATED | 67 | 126 | 82 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 115 | 40 | 71 |
Figure S12. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S13. Gene #2: 'amp_2p16.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 2(2P16.1) MUTATED | 66 | 90 | 48 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 86 | 32 | 45 |
Figure S13. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S14. Gene #2: 'amp_2p16.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 2(2P16.1) MUTATED | 47 | 113 | 87 | 26 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 66 | 39 | 67 | 53 |
Figure S14. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S15. Gene #2: 'amp_2p16.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 2(2P16.1) MUTATED | 82 | 131 | 60 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 96 | 58 | 71 |
Figure S15. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00038 (Fisher's exact test), Q value = 0.0018
Table S16. Gene #2: 'amp_2p16.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 2(2P16.1) MUTATED | 65 | 93 | 50 | 33 | 22 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 56 | 41 | 71 | 29 | 15 |
Figure S16. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00055 (Fisher's exact test), Q value = 0.0024
Table S17. Gene #2: 'amp_2p16.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 2(2P16.1) MUTATED | 54 | 64 | 122 | 23 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 35 | 54 | 77 | 46 |
Figure S17. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0312 (Fisher's exact test), Q value = 0.065
Table S18. Gene #2: 'amp_2p16.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 2(2P16.1) MUTATED | 39 | 76 | 71 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 50 | 53 | 45 |
Figure S18. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S19. Gene #2: 'amp_2p16.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 2(2P16.1) MUTATED | 22 | 104 | 60 |
| AMP PEAK 2(2P16.1) WILD-TYPE | 17 | 47 | 84 |
Figure S19. Get High-res Image Gene #2: 'amp_2p16.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0196 (Fisher's exact test), Q value = 0.044
Table S20. Gene #3: 'amp_2q31.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 3(2Q31.2) MUTATED | 10 | 27 | 8 | 10 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 32 | 25 | 24 | 18 |
Figure S20. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0225 (Fisher's exact test), Q value = 0.05
Table S21. Gene #3: 'amp_2q31.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 3(2Q31.2) MUTATED | 13 | 28 | 14 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 34 | 28 | 37 |
Figure S21. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S22. Gene #3: 'amp_2q31.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 3(2Q31.2) MUTATED | 38 | 80 | 54 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 144 | 86 | 99 |
Figure S22. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S23. Gene #3: 'amp_2q31.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 3(2Q31.2) MUTATED | 39 | 66 | 26 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 113 | 56 | 67 |
Figure S23. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S24. Gene #3: 'amp_2q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 3(2Q31.2) MUTATED | 28 | 78 | 48 | 17 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 85 | 74 | 106 | 62 |
Figure S24. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S25. Gene #3: 'amp_2q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 3(2Q31.2) MUTATED | 42 | 91 | 38 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 136 | 98 | 93 |
Figure S25. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00273 (Fisher's exact test), Q value = 0.0088
Table S26. Gene #3: 'amp_2q31.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 3(2Q31.2) MUTATED | 45 | 62 | 29 | 18 | 10 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 76 | 72 | 92 | 44 | 27 |
Figure S26. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00333 (Fisher's exact test), Q value = 0.01
Table S27. Gene #3: 'amp_2q31.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 3(2Q31.2) MUTATED | 18 | 47 | 48 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 71 | 82 | 68 |
Figure S27. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00044 (Fisher's exact test), Q value = 0.002
Table S28. Gene #3: 'amp_2q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 3(2Q31.2) MUTATED | 9 | 68 | 36 |
| AMP PEAK 3(2Q31.2) WILD-TYPE | 30 | 83 | 108 |
Figure S28. Get High-res Image Gene #3: 'amp_2q31.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.002
Table S29. Gene #4: 'amp_3q26.33' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 4(3Q26.33) MUTATED | 40 | 52 | 25 | 23 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 2 | 0 | 7 | 5 |
Figure S29. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00059 (Fisher's exact test), Q value = 0.0025
Table S30. Gene #4: 'amp_3q26.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 4(3Q26.33) MUTATED | 43 | 56 | 41 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 4 | 0 | 10 |
Figure S30. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S31. Gene #4: 'amp_3q26.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 4(3Q26.33) MUTATED | 141 | 165 | 146 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 41 | 1 | 7 |
Figure S31. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S32. Gene #4: 'amp_3q26.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 4(3Q26.33) MUTATED | 121 | 122 | 87 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 31 | 0 | 6 |
Figure S32. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0322 (Fisher's exact test), Q value = 0.067
Table S33. Gene #4: 'amp_3q26.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| AMP PEAK 4(3Q26.33) MUTATED | 47 | 32 | 50 | 44 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 7 | 9 | 2 | 3 |
Figure S33. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S34. Gene #4: 'amp_3q26.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 4(3Q26.33) MUTATED | 107 | 152 | 132 | 58 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 6 | 0 | 22 | 21 |
Figure S34. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S35. Gene #4: 'amp_3q26.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 4(3Q26.33) MUTATED | 163 | 188 | 98 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 15 | 1 | 33 |
Figure S35. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00013 (Fisher's exact test), Q value = 0.00077
Table S36. Gene #4: 'amp_3q26.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 4(3Q26.33) MUTATED | 108 | 130 | 97 | 59 | 35 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 13 | 4 | 24 | 3 | 2 |
Figure S36. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S37. Gene #4: 'amp_3q26.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 4(3Q26.33) MUTATED | 89 | 108 | 189 | 43 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 0 | 10 | 10 | 26 |
Figure S37. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0186 (Fisher's exact test), Q value = 0.042
Table S38. Gene #4: 'amp_3q26.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 4(3Q26.33) MUTATED | 73 | 118 | 109 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 16 | 11 | 7 |
Figure S38. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S39. Gene #4: 'amp_3q26.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 4(3Q26.33) MUTATED | 36 | 146 | 118 |
| AMP PEAK 4(3Q26.33) WILD-TYPE | 3 | 5 | 26 |
Figure S39. Get High-res Image Gene #4: 'amp_3q26.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00166 (Fisher's exact test), Q value = 0.0058
Table S40. Gene #5: 'amp_4q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 5(4Q12) MUTATED | 29 | 40 | 50 |
| AMP PEAK 5(4Q12) WILD-TYPE | 153 | 126 | 103 |
Figure S40. Get High-res Image Gene #5: 'amp_4q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0329 (Fisher's exact test), Q value = 0.068
Table S41. Gene #5: 'amp_4q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 5(4Q12) MUTATED | 32 | 35 | 20 | 10 | 14 |
| AMP PEAK 5(4Q12) WILD-TYPE | 89 | 99 | 101 | 52 | 23 |
Figure S41. Get High-res Image Gene #5: 'amp_4q12' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0365 (Fisher's exact test), Q value = 0.074
Table S42. Gene #5: 'amp_4q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 5(4Q12) MUTATED | 14 | 33 | 24 |
| AMP PEAK 5(4Q12) WILD-TYPE | 25 | 118 | 120 |
Figure S42. Get High-res Image Gene #5: 'amp_4q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S43. Gene #6: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 6(5P15.33) MUTATED | 126 | 121 | 140 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 56 | 45 | 13 |
Figure S43. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00222 (Fisher's exact test), Q value = 0.0074
Table S44. Gene #6: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 6(5P15.33) MUTATED | 114 | 86 | 83 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 38 | 36 | 10 |
Figure S44. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00564 (Fisher's exact test), Q value = 0.016
Table S45. Gene #6: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 6(5P15.33) MUTATED | 66 | 88 | 168 | 45 |
| AMP PEAK 6(5P15.33) WILD-TYPE | 23 | 30 | 31 | 24 |
Figure S45. Get High-res Image Gene #6: 'amp_5p15.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S46. Gene #7: 'amp_5p12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 7(5P12) MUTATED | 106 | 118 | 130 |
| AMP PEAK 7(5P12) WILD-TYPE | 76 | 48 | 23 |
Figure S46. Get High-res Image Gene #7: 'amp_5p12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00068 (Fisher's exact test), Q value = 0.0029
Table S47. Gene #7: 'amp_5p12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 7(5P12) MUTATED | 98 | 80 | 79 |
| AMP PEAK 7(5P12) WILD-TYPE | 54 | 42 | 14 |
Figure S47. Get High-res Image Gene #7: 'amp_5p12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S48. Gene #8: 'amp_6p12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 8(6P12.1) MUTATED | 36 | 72 | 58 |
| AMP PEAK 8(6P12.1) WILD-TYPE | 146 | 94 | 95 |
Figure S48. Get High-res Image Gene #8: 'amp_6p12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00066 (Fisher's exact test), Q value = 0.0028
Table S49. Gene #8: 'amp_6p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 8(6P12.1) MUTATED | 21 | 62 | 57 | 24 |
| AMP PEAK 8(6P12.1) WILD-TYPE | 92 | 90 | 97 | 55 |
Figure S49. Get High-res Image Gene #8: 'amp_6p12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00067
Table S50. Gene #8: 'amp_6p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 8(6P12.1) MUTATED | 13 | 67 | 31 |
| AMP PEAK 8(6P12.1) WILD-TYPE | 26 | 84 | 113 |
Figure S50. Get High-res Image Gene #8: 'amp_6p12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S51. Gene #9: 'amp_6q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 9(6Q12) MUTATED | 33 | 64 | 55 |
| AMP PEAK 9(6Q12) WILD-TYPE | 149 | 102 | 98 |
Figure S51. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0023 (Fisher's exact test), Q value = 0.0076
Table S52. Gene #9: 'amp_6q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 9(6Q12) MUTATED | 34 | 50 | 23 |
| AMP PEAK 9(6Q12) WILD-TYPE | 118 | 72 | 70 |
Figure S52. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00094 (Fisher's exact test), Q value = 0.0037
Table S53. Gene #9: 'amp_6q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 9(6Q12) MUTATED | 20 | 58 | 53 | 19 |
| AMP PEAK 9(6Q12) WILD-TYPE | 93 | 94 | 101 | 60 |
Figure S53. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00562 (Fisher's exact test), Q value = 0.016
Table S54. Gene #9: 'amp_6q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 9(6Q12) MUTATED | 38 | 66 | 46 |
| AMP PEAK 9(6Q12) WILD-TYPE | 140 | 123 | 85 |
Figure S54. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0221 (Fisher's exact test), Q value = 0.049
Table S55. Gene #9: 'amp_6q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 9(6Q12) MUTATED | 36 | 30 | 66 | 14 |
| AMP PEAK 9(6Q12) WILD-TYPE | 53 | 88 | 133 | 55 |
Figure S55. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00612 (Fisher's exact test), Q value = 0.017
Table S56. Gene #9: 'amp_6q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 9(6Q12) MUTATED | 12 | 58 | 31 |
| AMP PEAK 9(6Q12) WILD-TYPE | 27 | 93 | 113 |
Figure S56. Get High-res Image Gene #9: 'amp_6q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0307 (Fisher's exact test), Q value = 0.064
Table S57. Gene #10: 'amp_7p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 10(7P11.2) MUTATED | 23 | 37 | 21 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 24 | 19 | 30 |
Figure S57. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S58. Gene #10: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 10(7P11.2) MUTATED | 73 | 109 | 74 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 109 | 57 | 79 |
Figure S58. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0042 (Fisher's exact test), Q value = 0.012
Table S59. Gene #10: 'amp_7p11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 10(7P11.2) MUTATED | 63 | 75 | 48 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 89 | 47 | 45 |
Figure S59. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00196 (Fisher's exact test), Q value = 0.0067
Table S60. Gene #10: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 10(7P11.2) MUTATED | 55 | 96 | 72 | 31 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 58 | 56 | 82 | 48 |
Figure S60. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S61. Gene #10: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 10(7P11.2) MUTATED | 78 | 122 | 54 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 100 | 67 | 77 |
Figure S61. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0466 (Fisher's exact test), Q value = 0.092
Table S62. Gene #10: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 10(7P11.2) MUTATED | 58 | 56 | 100 | 33 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 31 | 62 | 99 | 36 |
Figure S62. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0443 (Fisher's exact test), Q value = 0.088
Table S63. Gene #10: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 10(7P11.2) MUTATED | 43 | 58 | 70 |
| AMP PEAK 10(7P11.2) WILD-TYPE | 46 | 71 | 46 |
Figure S63. Get High-res Image Gene #10: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.015 (Fisher's exact test), Q value = 0.036
Table S64. Gene #11: 'amp_7q21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 11(7Q21.2) MUTATED | 30 | 39 | 22 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 17 | 17 | 29 |
Figure S64. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S65. Gene #11: 'amp_7q21.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 11(7Q21.2) MUTATED | 59 | 122 | 83 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 123 | 44 | 70 |
Figure S65. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S66. Gene #11: 'amp_7q21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 11(7Q21.2) MUTATED | 55 | 83 | 48 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 97 | 39 | 45 |
Figure S66. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S67. Gene #11: 'amp_7q21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 11(7Q21.2) MUTATED | 55 | 108 | 69 | 30 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 58 | 44 | 85 | 49 |
Figure S67. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S68. Gene #11: 'amp_7q21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 11(7Q21.2) MUTATED | 74 | 130 | 58 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 104 | 59 | 73 |
Figure S68. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00093
Table S69. Gene #11: 'amp_7q21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 11(7Q21.2) MUTATED | 71 | 86 | 45 | 35 | 17 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 50 | 48 | 76 | 27 | 20 |
Figure S69. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00096 (Fisher's exact test), Q value = 0.0037
Table S70. Gene #11: 'amp_7q21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 11(7Q21.2) MUTATED | 63 | 63 | 100 | 28 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 26 | 55 | 99 | 41 |
Figure S70. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0016 (Fisher's exact test), Q value = 0.0057
Table S71. Gene #11: 'amp_7q21.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 11(7Q21.2) MUTATED | 33 | 63 | 72 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 56 | 66 | 44 |
Figure S71. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00079 (Fisher's exact test), Q value = 0.0032
Table S72. Gene #11: 'amp_7q21.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 11(7Q21.2) MUTATED | 17 | 93 | 58 |
| AMP PEAK 11(7Q21.2) WILD-TYPE | 22 | 58 | 86 |
Figure S72. Get High-res Image Gene #11: 'amp_7q21.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0129 (Fisher's exact test), Q value = 0.032
Table S73. Gene #12: 'amp_8p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 12(8P11.23) MUTATED | 30 | 24 | 12 | 12 |
| AMP PEAK 12(8P11.23) WILD-TYPE | 12 | 28 | 20 | 16 |
Figure S73. Get High-res Image Gene #12: 'amp_8p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 9e-04
Table S74. Gene #12: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 12(8P11.23) MUTATED | 73 | 71 | 94 |
| AMP PEAK 12(8P11.23) WILD-TYPE | 109 | 95 | 59 |
Figure S74. Get High-res Image Gene #12: 'amp_8p11.23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0211 (Fisher's exact test), Q value = 0.047
Table S75. Gene #13: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 13(8Q24.21) MUTATED | 118 | 114 | 120 |
| AMP PEAK 13(8Q24.21) WILD-TYPE | 64 | 52 | 33 |
Figure S75. Get High-res Image Gene #13: 'amp_8q24.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00181 (Fisher's exact test), Q value = 0.0063
Table S76. Gene #14: 'amp_9p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 14(9P13.3) MUTATED | 40 | 62 | 34 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 142 | 104 | 119 |
Figure S76. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00256 (Fisher's exact test), Q value = 0.0084
Table S77. Gene #14: 'amp_9p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 14(9P13.3) MUTATED | 33 | 49 | 23 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 119 | 73 | 70 |
Figure S77. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00302 (Fisher's exact test), Q value = 0.0095
Table S78. Gene #14: 'amp_9p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| AMP PEAK 14(9P13.3) MUTATED | 21 | 3 | 11 | 13 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 33 | 38 | 41 | 34 |
Figure S78. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00145 (Fisher's exact test), Q value = 0.0052
Table S79. Gene #14: 'amp_9p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 14(9P13.3) MUTATED | 23 | 58 | 41 | 14 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 90 | 94 | 113 | 65 |
Figure S79. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00135 (Fisher's exact test), Q value = 0.0049
Table S80. Gene #14: 'amp_9p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 14(9P13.3) MUTATED | 34 | 68 | 34 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 144 | 121 | 97 |
Figure S80. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00665 (Fisher's exact test), Q value = 0.018
Table S81. Gene #14: 'amp_9p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 14(9P13.3) MUTATED | 33 | 40 | 20 | 25 | 13 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 88 | 94 | 101 | 37 | 24 |
Figure S81. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00335 (Fisher's exact test), Q value = 0.01
Table S82. Gene #14: 'amp_9p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 14(9P13.3) MUTATED | 32 | 41 | 48 | 10 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 57 | 77 | 151 | 59 |
Figure S82. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0167 (Fisher's exact test), Q value = 0.039
Table S83. Gene #14: 'amp_9p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 14(9P13.3) MUTATED | 15 | 44 | 32 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 74 | 85 | 84 |
Figure S83. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0126 (Fisher's exact test), Q value = 0.031
Table S84. Gene #14: 'amp_9p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 14(9P13.3) MUTATED | 9 | 53 | 29 |
| AMP PEAK 14(9P13.3) WILD-TYPE | 30 | 98 | 115 |
Figure S84. Get High-res Image Gene #14: 'amp_9p13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0469 (Fisher's exact test), Q value = 0.093
Table S85. Gene #15: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 15(11Q13.3) MUTATED | 17 | 11 | 11 | 14 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 25 | 41 | 21 | 14 |
Figure S85. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0345 (Fisher's exact test), Q value = 0.071
Table S86. Gene #15: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 15(11Q13.3) MUTATED | 19 | 12 | 22 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 28 | 44 | 29 |
Figure S86. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S87. Gene #15: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 15(11Q13.3) MUTATED | 46 | 62 | 77 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 136 | 104 | 76 |
Figure S87. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00073 (Fisher's exact test), Q value = 0.003
Table S88. Gene #15: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 15(11Q13.3) MUTATED | 44 | 45 | 50 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 108 | 77 | 43 |
Figure S88. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0307 (Fisher's exact test), Q value = 0.064
Table S89. Gene #15: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 15(11Q13.3) MUTATED | 47 | 43 | 67 | 28 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 66 | 109 | 87 | 51 |
Figure S89. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00133 (Fisher's exact test), Q value = 0.0049
Table S90. Gene #15: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 15(11Q13.3) MUTATED | 46 | 60 | 40 | 12 | 20 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 75 | 74 | 81 | 50 | 17 |
Figure S90. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00517 (Fisher's exact test), Q value = 0.015
Table S91. Gene #15: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 15(11Q13.3) MUTATED | 24 | 47 | 89 | 18 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 65 | 71 | 110 | 51 |
Figure S91. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00273 (Fisher's exact test), Q value = 0.0088
Table S92. Gene #15: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 15(11Q13.3) MUTATED | 21 | 66 | 41 |
| AMP PEAK 15(11Q13.3) WILD-TYPE | 18 | 85 | 103 |
Figure S92. Get High-res Image Gene #15: 'amp_11q13.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00792 (Fisher's exact test), Q value = 0.021
Table S93. Gene #16: 'amp_12p13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 16(12P13.33) MUTATED | 12 | 33 | 13 | 13 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 30 | 19 | 19 | 15 |
Figure S93. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0217 (Fisher's exact test), Q value = 0.048
Table S94. Gene #16: 'amp_12p13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 16(12P13.33) MUTATED | 17 | 34 | 20 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 30 | 22 | 31 |
Figure S94. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S95. Gene #16: 'amp_12p13.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 16(12P13.33) MUTATED | 63 | 110 | 82 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 119 | 56 | 71 |
Figure S95. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0049 (Fisher's exact test), Q value = 0.014
Table S96. Gene #16: 'amp_12p13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 16(12P13.33) MUTATED | 67 | 76 | 56 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 85 | 46 | 37 |
Figure S96. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S97. Gene #16: 'amp_12p13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 16(12P13.33) MUTATED | 37 | 98 | 90 | 28 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 76 | 54 | 64 | 51 |
Figure S97. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00162 (Fisher's exact test), Q value = 0.0057
Table S98. Gene #16: 'amp_12p13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 16(12P13.33) MUTATED | 72 | 111 | 70 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 106 | 78 | 61 |
Figure S98. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00273 (Fisher's exact test), Q value = 0.0088
Table S99. Gene #16: 'amp_12p13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 16(12P13.33) MUTATED | 57 | 58 | 108 | 24 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 32 | 60 | 91 | 45 |
Figure S99. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00602 (Fisher's exact test), Q value = 0.017
Table S100. Gene #16: 'amp_12p13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 16(12P13.33) MUTATED | 20 | 95 | 64 |
| AMP PEAK 16(12P13.33) WILD-TYPE | 19 | 56 | 80 |
Figure S100. Get High-res Image Gene #16: 'amp_12p13.33' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S101. Gene #17: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 17(12Q15) MUTATED | 46 | 80 | 52 |
| AMP PEAK 17(12Q15) WILD-TYPE | 136 | 86 | 101 |
Figure S101. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00778 (Fisher's exact test), Q value = 0.02
Table S102. Gene #17: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 17(12Q15) MUTATED | 42 | 56 | 32 |
| AMP PEAK 17(12Q15) WILD-TYPE | 110 | 66 | 61 |
Figure S102. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00572 (Fisher's exact test), Q value = 0.016
Table S103. Gene #17: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 17(12Q15) MUTATED | 28 | 69 | 53 | 26 |
| AMP PEAK 17(12Q15) WILD-TYPE | 85 | 83 | 101 | 53 |
Figure S103. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0109 (Fisher's exact test), Q value = 0.027
Table S104. Gene #17: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 17(12Q15) MUTATED | 48 | 73 | 55 |
| AMP PEAK 17(12Q15) WILD-TYPE | 130 | 116 | 76 |
Figure S104. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0237 (Fisher's exact test), Q value = 0.052
Table S105. Gene #17: 'amp_12q15' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 17(12Q15) MUTATED | 22 | 44 | 50 |
| AMP PEAK 17(12Q15) WILD-TYPE | 67 | 85 | 66 |
Figure S105. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0036 (Fisher's exact test), Q value = 0.011
Table S106. Gene #17: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 17(12Q15) MUTATED | 10 | 67 | 39 |
| AMP PEAK 17(12Q15) WILD-TYPE | 29 | 84 | 105 |
Figure S106. Get High-res Image Gene #17: 'amp_12q15' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0134 (Fisher's exact test), Q value = 0.033
Table S107. Gene #18: 'amp_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 18(13Q34) MUTATED | 25 | 32 | 21 | 7 | 1 |
| AMP PEAK 18(13Q34) WILD-TYPE | 96 | 102 | 100 | 55 | 36 |
Figure S107. Get High-res Image Gene #18: 'amp_13q34' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0343 (Fisher's exact test), Q value = 0.071
Table S108. Gene #18: 'amp_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 18(13Q34) MUTATED | 8 | 27 | 41 | 10 |
| AMP PEAK 18(13Q34) WILD-TYPE | 81 | 91 | 158 | 59 |
Figure S108. Get High-res Image Gene #18: 'amp_13q34' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0261 (Fisher's exact test), Q value = 0.056
Table S109. Gene #19: 'amp_14q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 19(14Q13.3) MUTATED | 23 | 15 | 13 |
| AMP PEAK 19(14Q13.3) WILD-TYPE | 24 | 41 | 38 |
Figure S109. Get High-res Image Gene #19: 'amp_14q13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00264 (Fisher's exact test), Q value = 0.0086
Table S110. Gene #19: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 19(14Q13.3) MUTATED | 73 | 56 | 30 |
| AMP PEAK 19(14Q13.3) WILD-TYPE | 105 | 133 | 101 |
Figure S110. Get High-res Image Gene #19: 'amp_14q13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0182 (Fisher's exact test), Q value = 0.042
Table S111. Gene #19: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 19(14Q13.3) MUTATED | 44 | 45 | 42 | 9 | 14 |
| AMP PEAK 19(14Q13.3) WILD-TYPE | 77 | 89 | 79 | 53 | 23 |
Figure S111. Get High-res Image Gene #19: 'amp_14q13.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0302 (Fisher's exact test), Q value = 0.064
Table S112. Gene #20: 'amp_14q32.33' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 20(14Q32.33) MUTATED | 20 | 15 | 5 | 9 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 22 | 37 | 27 | 19 |
Figure S112. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0153 (Fisher's exact test), Q value = 0.036
Table S113. Gene #20: 'amp_14q32.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 20(14Q32.33) MUTATED | 22 | 17 | 10 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 25 | 39 | 41 |
Figure S113. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00186 (Fisher's exact test), Q value = 0.0064
Table S114. Gene #20: 'amp_14q32.33' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 20(14Q32.33) MUTATED | 40 | 62 | 56 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 142 | 104 | 97 |
Figure S114. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00069 (Fisher's exact test), Q value = 0.0029
Table S115. Gene #20: 'amp_14q32.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 20(14Q32.33) MUTATED | 33 | 51 | 35 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 119 | 71 | 58 |
Figure S115. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0256 (Fisher's exact test), Q value = 0.056
Table S116. Gene #20: 'amp_14q32.33' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 60 | 73 | 61 |
| AMP PEAK 20(14Q32.33) MUTATED | 14 | 30 | 13 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 46 | 43 | 48 |
Figure S116. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00077 (Fisher's exact test), Q value = 0.0031
Table S117. Gene #20: 'amp_14q32.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 20(14Q32.33) MUTATED | 47 | 58 | 36 | 17 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 66 | 94 | 118 | 62 |
Figure S117. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4e-04 (Fisher's exact test), Q value = 0.0018
Table S118. Gene #20: 'amp_14q32.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 20(14Q32.33) MUTATED | 66 | 68 | 24 |
| AMP PEAK 20(14Q32.33) WILD-TYPE | 112 | 121 | 107 |
Figure S118. Get High-res Image Gene #20: 'amp_14q32.33' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S119. Gene #21: 'amp_15q26.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 21(15Q26.3) MUTATED | 41 | 82 | 56 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 141 | 84 | 97 |
Figure S119. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00033 (Fisher's exact test), Q value = 0.0016
Table S120. Gene #21: 'amp_15q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 21(15Q26.3) MUTATED | 36 | 56 | 36 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 116 | 66 | 57 |
Figure S120. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.027 (Fisher's exact test), Q value = 0.058
Table S121. Gene #21: 'amp_15q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| AMP PEAK 21(15Q26.3) MUTATED | 12 | 15 | 19 | 24 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 42 | 26 | 33 | 23 |
Figure S121. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S122. Gene #21: 'amp_15q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 21(15Q26.3) MUTATED | 28 | 76 | 49 | 23 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 85 | 76 | 105 | 56 |
Figure S122. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00286 (Fisher's exact test), Q value = 0.0092
Table S123. Gene #21: 'amp_15q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 21(15Q26.3) MUTATED | 57 | 84 | 35 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 121 | 105 | 96 |
Figure S123. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0392 (Fisher's exact test), Q value = 0.079
Table S124. Gene #21: 'amp_15q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 21(15Q26.3) MUTATED | 40 | 57 | 33 | 29 | 14 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 81 | 77 | 88 | 33 | 23 |
Figure S124. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00638 (Fisher's exact test), Q value = 0.017
Table S125. Gene #21: 'amp_15q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 21(15Q26.3) MUTATED | 44 | 39 | 74 | 16 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 45 | 79 | 125 | 53 |
Figure S125. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00716 (Fisher's exact test), Q value = 0.019
Table S126. Gene #21: 'amp_15q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 21(15Q26.3) MUTATED | 19 | 48 | 48 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 70 | 81 | 68 |
Figure S126. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00433 (Fisher's exact test), Q value = 0.013
Table S127. Gene #21: 'amp_15q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 21(15Q26.3) MUTATED | 12 | 66 | 37 |
| AMP PEAK 21(15Q26.3) WILD-TYPE | 27 | 85 | 107 |
Figure S127. Get High-res Image Gene #21: 'amp_15q26.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00839 (Fisher's exact test), Q value = 0.022
Table S128. Gene #22: 'amp_17q25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 22(17Q25.1) MUTATED | 20 | 31 | 9 | 19 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 22 | 21 | 23 | 9 |
Figure S128. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S129. Gene #22: 'amp_17q25.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 22(17Q25.1) MUTATED | 54 | 112 | 70 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 128 | 54 | 83 |
Figure S129. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S130. Gene #22: 'amp_17q25.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 22(17Q25.1) MUTATED | 47 | 76 | 44 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 105 | 46 | 49 |
Figure S130. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S131. Gene #22: 'amp_17q25.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 22(17Q25.1) MUTATED | 41 | 97 | 70 | 26 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 72 | 55 | 84 | 53 |
Figure S131. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S132. Gene #22: 'amp_17q25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 22(17Q25.1) MUTATED | 67 | 115 | 52 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 111 | 74 | 79 |
Figure S132. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00039 (Fisher's exact test), Q value = 0.0018
Table S133. Gene #22: 'amp_17q25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 22(17Q25.1) MUTATED | 62 | 78 | 38 | 26 | 19 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 59 | 56 | 83 | 36 | 18 |
Figure S133. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00468 (Fisher's exact test), Q value = 0.014
Table S134. Gene #22: 'amp_17q25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 22(17Q25.1) MUTATED | 53 | 51 | 97 | 22 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 36 | 67 | 102 | 47 |
Figure S134. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00122 (Fisher's exact test), Q value = 0.0045
Table S135. Gene #22: 'amp_17q25.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 22(17Q25.1) MUTATED | 27 | 63 | 64 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 62 | 66 | 52 |
Figure S135. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00021 (Fisher's exact test), Q value = 0.0011
Table S136. Gene #22: 'amp_17q25.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 22(17Q25.1) MUTATED | 14 | 88 | 52 |
| AMP PEAK 22(17Q25.1) WILD-TYPE | 25 | 63 | 92 |
Figure S136. Get High-res Image Gene #22: 'amp_17q25.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0436 (Fisher's exact test), Q value = 0.087
Table S137. Gene #23: 'amp_18p11.32' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 23(18P11.32) MUTATED | 13 | 27 | 8 | 8 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 29 | 25 | 24 | 20 |
Figure S137. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0044 (Fisher's exact test), Q value = 0.013
Table S138. Gene #23: 'amp_18p11.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 23(18P11.32) MUTATED | 13 | 30 | 13 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 34 | 26 | 38 |
Figure S138. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S139. Gene #23: 'amp_18p11.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 23(18P11.32) MUTATED | 38 | 81 | 60 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 144 | 85 | 93 |
Figure S139. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S140. Gene #23: 'amp_18p11.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 23(18P11.32) MUTATED | 33 | 55 | 44 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 119 | 67 | 49 |
Figure S140. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0409 (Fisher's exact test), Q value = 0.082
Table S141. Gene #23: 'amp_18p11.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 23(18P11.32) MUTATED | 37 | 68 | 51 | 22 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 76 | 84 | 103 | 57 |
Figure S141. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00148 (Fisher's exact test), Q value = 0.0053
Table S142. Gene #23: 'amp_18p11.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 23(18P11.32) MUTATED | 50 | 86 | 42 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 128 | 103 | 89 |
Figure S142. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.019 (Fisher's exact test), Q value = 0.043
Table S143. Gene #23: 'amp_18p11.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 23(18P11.32) MUTATED | 42 | 58 | 30 | 24 | 17 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 79 | 76 | 91 | 38 | 20 |
Figure S143. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00027 (Fisher's exact test), Q value = 0.0014
Table S144. Gene #23: 'amp_18p11.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 23(18P11.32) MUTATED | 11 | 71 | 36 |
| AMP PEAK 23(18P11.32) WILD-TYPE | 28 | 80 | 108 |
Figure S144. Get High-res Image Gene #23: 'amp_18p11.32' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00048 (Fisher's exact test), Q value = 0.0021
Table S145. Gene #24: 'amp_18q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 24(18Q11.2) MUTATED | 8 | 25 | 5 | 15 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 34 | 27 | 27 | 13 |
Figure S145. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.015 (Fisher's exact test), Q value = 0.036
Table S146. Gene #24: 'amp_18q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 24(18Q11.2) MUTATED | 10 | 27 | 16 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 37 | 29 | 35 |
Figure S146. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S147. Gene #24: 'amp_18q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 24(18Q11.2) MUTATED | 30 | 76 | 45 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 152 | 90 | 108 |
Figure S147. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S148. Gene #24: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 24(18Q11.2) MUTATED | 26 | 52 | 29 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 126 | 70 | 64 |
Figure S148. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S149. Gene #24: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 24(18Q11.2) MUTATED | 26 | 64 | 51 | 9 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 87 | 88 | 103 | 70 |
Figure S149. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S150. Gene #24: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 24(18Q11.2) MUTATED | 35 | 77 | 38 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 143 | 112 | 93 |
Figure S150. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0119 (Fisher's exact test), Q value = 0.03
Table S151. Gene #24: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| AMP PEAK 24(18Q11.2) MUTATED | 38 | 47 | 22 | 24 | 12 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 83 | 87 | 99 | 38 | 25 |
Figure S151. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00305 (Fisher's exact test), Q value = 0.0096
Table S152. Gene #24: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 24(18Q11.2) MUTATED | 38 | 32 | 62 | 11 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 51 | 86 | 137 | 58 |
Figure S152. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0498 (Fisher's exact test), Q value = 0.097
Table S153. Gene #24: 'amp_18q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 24(18Q11.2) MUTATED | 17 | 37 | 40 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 72 | 92 | 76 |
Figure S153. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S154. Gene #24: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 24(18Q11.2) MUTATED | 7 | 61 | 26 |
| AMP PEAK 24(18Q11.2) WILD-TYPE | 32 | 90 | 118 |
Figure S154. Get High-res Image Gene #24: 'amp_18q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S155. Gene #25: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 25(19Q12) MUTATED | 56 | 106 | 62 |
| AMP PEAK 25(19Q12) WILD-TYPE | 126 | 60 | 91 |
Figure S155. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0199 (Fisher's exact test), Q value = 0.045
Table S156. Gene #25: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 25(19Q12) MUTATED | 61 | 69 | 40 |
| AMP PEAK 25(19Q12) WILD-TYPE | 91 | 53 | 53 |
Figure S156. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00263 (Fisher's exact test), Q value = 0.0086
Table S157. Gene #25: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 25(19Q12) MUTATED | 37 | 83 | 72 | 30 |
| AMP PEAK 25(19Q12) WILD-TYPE | 76 | 69 | 82 | 49 |
Figure S157. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0285 (Fisher's exact test), Q value = 0.061
Table S158. Gene #25: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 25(19Q12) MUTATED | 66 | 96 | 60 |
| AMP PEAK 25(19Q12) WILD-TYPE | 112 | 93 | 71 |
Figure S158. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00755 (Fisher's exact test), Q value = 0.02
Table S159. Gene #25: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 25(19Q12) MUTATED | 35 | 50 | 66 |
| AMP PEAK 25(19Q12) WILD-TYPE | 54 | 79 | 50 |
Figure S159. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00232 (Fisher's exact test), Q value = 0.0077
Table S160. Gene #25: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 25(19Q12) MUTATED | 18 | 83 | 50 |
| AMP PEAK 25(19Q12) WILD-TYPE | 21 | 68 | 94 |
Figure S160. Get High-res Image Gene #25: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S161. Gene #26: 'amp_19q13.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 26(19Q13.2) MUTATED | 60 | 107 | 67 |
| AMP PEAK 26(19Q13.2) WILD-TYPE | 122 | 59 | 86 |
Figure S161. Get High-res Image Gene #26: 'amp_19q13.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0267 (Fisher's exact test), Q value = 0.057
Table S162. Gene #26: 'amp_19q13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 26(19Q13.2) MUTATED | 64 | 70 | 40 |
| AMP PEAK 26(19Q13.2) WILD-TYPE | 88 | 52 | 53 |
Figure S162. Get High-res Image Gene #26: 'amp_19q13.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00521 (Fisher's exact test), Q value = 0.015
Table S163. Gene #26: 'amp_19q13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 26(19Q13.2) MUTATED | 39 | 85 | 74 | 33 |
| AMP PEAK 26(19Q13.2) WILD-TYPE | 74 | 67 | 80 | 46 |
Figure S163. Get High-res Image Gene #26: 'amp_19q13.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0306 (Fisher's exact test), Q value = 0.064
Table S164. Gene #26: 'amp_19q13.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 26(19Q13.2) MUTATED | 40 | 52 | 66 |
| AMP PEAK 26(19Q13.2) WILD-TYPE | 49 | 77 | 50 |
Figure S164. Get High-res Image Gene #26: 'amp_19q13.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0137 (Fisher's exact test), Q value = 0.033
Table S165. Gene #26: 'amp_19q13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 26(19Q13.2) MUTATED | 20 | 83 | 55 |
| AMP PEAK 26(19Q13.2) WILD-TYPE | 19 | 68 | 89 |
Figure S165. Get High-res Image Gene #26: 'amp_19q13.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00108 (Fisher's exact test), Q value = 0.0041
Table S166. Gene #27: 'amp_20p12.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| AMP PEAK 27(20P12.2) MUTATED | 23 | 37 | 9 | 12 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 19 | 15 | 23 | 16 |
Figure S166. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00235 (Fisher's exact test), Q value = 0.0078
Table S167. Gene #27: 'amp_20p12.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| AMP PEAK 27(20P12.2) MUTATED | 27 | 37 | 17 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 20 | 19 | 34 |
Figure S167. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S168. Gene #27: 'amp_20p12.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 27(20P12.2) MUTATED | 70 | 119 | 91 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 112 | 47 | 62 |
Figure S168. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00039 (Fisher's exact test), Q value = 0.0018
Table S169. Gene #27: 'amp_20p12.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 27(20P12.2) MUTATED | 74 | 87 | 49 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 78 | 35 | 44 |
Figure S169. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0177 (Fisher's exact test), Q value = 0.041
Table S170. Gene #27: 'amp_20p12.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 27(20P12.2) MUTATED | 56 | 101 | 82 | 40 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 57 | 51 | 72 | 39 |
Figure S170. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0155 (Fisher's exact test), Q value = 0.037
Table S171. Gene #27: 'amp_20p12.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 27(20P12.2) MUTATED | 94 | 121 | 64 |
| AMP PEAK 27(20P12.2) WILD-TYPE | 84 | 68 | 67 |
Figure S171. Get High-res Image Gene #27: 'amp_20p12.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S172. Gene #28: 'amp_20q11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 28(20Q11.21) MUTATED | 82 | 114 | 110 |
| AMP PEAK 28(20Q11.21) WILD-TYPE | 100 | 52 | 43 |
Figure S172. Get High-res Image Gene #28: 'amp_20q11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00591 (Fisher's exact test), Q value = 0.016
Table S173. Gene #28: 'amp_20q11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 28(20Q11.21) MUTATED | 80 | 87 | 58 |
| AMP PEAK 28(20Q11.21) WILD-TYPE | 72 | 35 | 35 |
Figure S173. Get High-res Image Gene #28: 'amp_20q11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00086
Table S174. Gene #29: 'amp_22q11.21' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 29(22Q11.21) MUTATED | 71 | 100 | 85 |
| AMP PEAK 29(22Q11.21) WILD-TYPE | 111 | 66 | 68 |
Figure S174. Get High-res Image Gene #29: 'amp_22q11.21' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00037 (Fisher's exact test), Q value = 0.0018
Table S175. Gene #29: 'amp_22q11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 29(22Q11.21) MUTATED | 62 | 79 | 51 |
| AMP PEAK 29(22Q11.21) WILD-TYPE | 90 | 43 | 42 |
Figure S175. Get High-res Image Gene #29: 'amp_22q11.21' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S176. Gene #29: 'amp_22q11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 29(22Q11.21) MUTATED | 55 | 100 | 68 | 31 |
| AMP PEAK 29(22Q11.21) WILD-TYPE | 58 | 52 | 86 | 48 |
Figure S176. Get High-res Image Gene #29: 'amp_22q11.21' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00024 (Fisher's exact test), Q value = 0.0012
Table S177. Gene #29: 'amp_22q11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| AMP PEAK 29(22Q11.21) MUTATED | 97 | 110 | 47 |
| AMP PEAK 29(22Q11.21) WILD-TYPE | 81 | 79 | 84 |
Figure S177. Get High-res Image Gene #29: 'amp_22q11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0416 (Fisher's exact test), Q value = 0.083
Table S178. Gene #29: 'amp_22q11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| AMP PEAK 29(22Q11.21) MUTATED | 48 | 55 | 114 | 27 |
| AMP PEAK 29(22Q11.21) WILD-TYPE | 41 | 63 | 85 | 42 |
Figure S178. Get High-res Image Gene #29: 'amp_22q11.21' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0117 (Fisher's exact test), Q value = 0.029
Table S179. Gene #30: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| AMP PEAK 30(XQ28) MUTATED | 34 | 54 | 36 |
| AMP PEAK 30(XQ28) WILD-TYPE | 148 | 112 | 117 |
Figure S179. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0355 (Fisher's exact test), Q value = 0.073
Table S180. Gene #30: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| AMP PEAK 30(XQ28) MUTATED | 28 | 39 | 23 |
| AMP PEAK 30(XQ28) WILD-TYPE | 124 | 83 | 70 |
Figure S180. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0369 (Fisher's exact test), Q value = 0.075
Table S181. Gene #30: 'amp_xq28' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 60 | 73 | 61 |
| AMP PEAK 30(XQ28) MUTATED | 14 | 26 | 10 |
| AMP PEAK 30(XQ28) WILD-TYPE | 46 | 47 | 51 |
Figure S181. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.0475 (Fisher's exact test), Q value = 0.093
Table S182. Gene #30: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| AMP PEAK 30(XQ28) MUTATED | 19 | 48 | 36 | 18 |
| AMP PEAK 30(XQ28) WILD-TYPE | 94 | 104 | 118 | 61 |
Figure S182. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0178 (Fisher's exact test), Q value = 0.041
Table S183. Gene #30: 'amp_xq28' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| AMP PEAK 30(XQ28) MUTATED | 17 | 25 | 39 |
| AMP PEAK 30(XQ28) WILD-TYPE | 72 | 104 | 77 |
Figure S183. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0324 (Fisher's exact test), Q value = 0.067
Table S184. Gene #30: 'amp_xq28' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| AMP PEAK 30(XQ28) MUTATED | 12 | 44 | 25 |
| AMP PEAK 30(XQ28) WILD-TYPE | 27 | 107 | 119 |
Figure S184. Get High-res Image Gene #30: 'amp_xq28' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S185. Gene #31: 'del_1p36.11' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 1(1P36.11) MUTATED | 12 | 39 | 13 | 10 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 30 | 13 | 19 | 18 |
Figure S185. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S186. Gene #31: 'del_1p36.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 1(1P36.11) MUTATED | 14 | 43 | 17 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 33 | 13 | 34 |
Figure S186. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S187. Gene #31: 'del_1p36.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 1(1P36.11) MUTATED | 45 | 138 | 45 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 137 | 28 | 108 |
Figure S187. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S188. Gene #31: 'del_1p36.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 1(1P36.11) MUTATED | 30 | 96 | 35 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 122 | 26 | 58 |
Figure S188. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00338 (Fisher's exact test), Q value = 0.01
Table S189. Gene #31: 'del_1p36.11' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 1(1P36.11) MUTATED | 26 | 15 | 15 | 30 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 28 | 26 | 37 | 17 |
Figure S189. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S190. Gene #31: 'del_1p36.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 1(1P36.11) MUTATED | 32 | 120 | 52 | 23 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 81 | 32 | 102 | 56 |
Figure S190. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S191. Gene #31: 'del_1p36.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 1(1P36.11) MUTATED | 46 | 140 | 41 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 132 | 49 | 90 |
Figure S191. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S192. Gene #31: 'del_1p36.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 1(1P36.11) MUTATED | 57 | 74 | 31 | 43 | 11 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 64 | 60 | 90 | 19 | 26 |
Figure S192. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S193. Gene #31: 'del_1p36.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 1(1P36.11) MUTATED | 66 | 52 | 83 | 15 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 23 | 66 | 116 | 54 |
Figure S193. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S194. Gene #31: 'del_1p36.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 1(1P36.11) MUTATED | 21 | 56 | 67 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 68 | 73 | 49 |
Figure S194. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S195. Gene #31: 'del_1p36.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 1(1P36.11) MUTATED | 9 | 90 | 45 |
| DEL PEAK 1(1P36.11) WILD-TYPE | 30 | 61 | 99 |
Figure S195. Get High-res Image Gene #31: 'del_1p36.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00016 (Fisher's exact test), Q value = 9e-04
Table S196. Gene #32: 'del_1p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 2(1P13.1) MUTATED | 17 | 37 | 9 | 9 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 25 | 15 | 23 | 19 |
Figure S196. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S197. Gene #32: 'del_1p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 2(1P13.1) MUTATED | 19 | 39 | 14 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 28 | 17 | 37 |
Figure S197. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S198. Gene #32: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 2(1P13.1) MUTATED | 47 | 124 | 50 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 135 | 42 | 103 |
Figure S198. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S199. Gene #32: 'del_1p13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 2(1P13.1) MUTATED | 40 | 83 | 34 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 112 | 39 | 59 |
Figure S199. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0231 (Fisher's exact test), Q value = 0.051
Table S200. Gene #32: 'del_1p13.1' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 60 | 73 | 61 |
| DEL PEAK 2(1P13.1) MUTATED | 35 | 26 | 24 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 25 | 47 | 37 |
Figure S200. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S201. Gene #32: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 2(1P13.1) MUTATED | 34 | 107 | 55 | 24 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 79 | 45 | 99 | 55 |
Figure S201. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S202. Gene #32: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 2(1P13.1) MUTATED | 48 | 125 | 47 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 130 | 64 | 84 |
Figure S202. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S203. Gene #32: 'del_1p13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 2(1P13.1) MUTATED | 51 | 70 | 28 | 44 | 17 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 70 | 64 | 93 | 18 | 20 |
Figure S203. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S204. Gene #32: 'del_1p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 2(1P13.1) MUTATED | 62 | 53 | 79 | 16 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 27 | 65 | 120 | 53 |
Figure S204. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00042 (Fisher's exact test), Q value = 0.0019
Table S205. Gene #32: 'del_1p13.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 2(1P13.1) MUTATED | 23 | 57 | 62 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 66 | 72 | 54 |
Figure S205. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S206. Gene #32: 'del_1p13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 2(1P13.1) MUTATED | 10 | 88 | 44 |
| DEL PEAK 2(1P13.1) WILD-TYPE | 29 | 63 | 100 |
Figure S206. Get High-res Image Gene #32: 'del_1p13.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00876 (Fisher's exact test), Q value = 0.023
Table S207. Gene #33: 'del_2p25.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 3(2P25.3) MUTATED | 18 | 19 | 4 | 4 | 3 |
| DEL PEAK 3(2P25.3) WILD-TYPE | 103 | 115 | 117 | 58 | 34 |
Figure S207. Get High-res Image Gene #33: 'del_2p25.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0476 (Fisher's exact test), Q value = 0.093
Table S208. Gene #33: 'del_2p25.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 3(2P25.3) MUTATED | 3 | 11 | 15 |
| DEL PEAK 3(2P25.3) WILD-TYPE | 86 | 118 | 101 |
Figure S208. Get High-res Image Gene #33: 'del_2p25.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0292 (Fisher's exact test), Q value = 0.062
Table S209. Gene #33: 'del_2p25.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 3(2P25.3) MUTATED | 2 | 20 | 7 |
| DEL PEAK 3(2P25.3) WILD-TYPE | 37 | 131 | 137 |
Figure S209. Get High-res Image Gene #33: 'del_2p25.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S210. Gene #34: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 4(2Q22.1) MUTATED | 26 | 64 | 41 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 156 | 102 | 112 |
Figure S210. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00072 (Fisher's exact test), Q value = 0.003
Table S211. Gene #34: 'del_2q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 4(2Q22.1) MUTATED | 23 | 42 | 27 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 129 | 80 | 66 |
Figure S211. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00219 (Fisher's exact test), Q value = 0.0073
Table S212. Gene #34: 'del_2q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 4(2Q22.1) MUTATED | 24 | 50 | 47 | 10 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 89 | 102 | 107 | 69 |
Figure S212. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00735 (Fisher's exact test), Q value = 0.02
Table S213. Gene #34: 'del_2q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 4(2Q22.1) MUTATED | 33 | 62 | 36 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 145 | 127 | 95 |
Figure S213. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00016 (Fisher's exact test), Q value = 9e-04
Table S214. Gene #34: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 4(2Q22.1) MUTATED | 37 | 48 | 16 | 20 | 6 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 84 | 86 | 105 | 42 | 31 |
Figure S214. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00048 (Fisher's exact test), Q value = 0.0021
Table S215. Gene #34: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 4(2Q22.1) MUTATED | 35 | 38 | 45 | 9 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 54 | 80 | 154 | 60 |
Figure S215. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0193 (Fisher's exact test), Q value = 0.044
Table S216. Gene #34: 'del_2q22.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 4(2Q22.1) MUTATED | 13 | 39 | 33 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 76 | 90 | 83 |
Figure S216. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0242 (Fisher's exact test), Q value = 0.053
Table S217. Gene #34: 'del_2q22.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 4(2Q22.1) MUTATED | 9 | 49 | 27 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 30 | 102 | 117 |
Figure S217. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00315 (Fisher's exact test), Q value = 0.0098
Table S218. Gene #35: 'del_2q37.1' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 5(2Q37.1) MUTATED | 7 | 26 | 7 | 10 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 35 | 26 | 25 | 18 |
Figure S218. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00071 (Fisher's exact test), Q value = 0.003
Table S219. Gene #35: 'del_2q37.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 5(2Q37.1) MUTATED | 11 | 29 | 10 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 36 | 27 | 41 |
Figure S219. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S220. Gene #35: 'del_2q37.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 5(2Q37.1) MUTATED | 33 | 85 | 41 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 149 | 81 | 112 |
Figure S220. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S221. Gene #35: 'del_2q37.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 5(2Q37.1) MUTATED | 27 | 60 | 33 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 125 | 62 | 60 |
Figure S221. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S222. Gene #35: 'del_2q37.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 5(2Q37.1) MUTATED | 33 | 72 | 43 | 10 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 80 | 80 | 111 | 69 |
Figure S222. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S223. Gene #35: 'del_2q37.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 5(2Q37.1) MUTATED | 38 | 88 | 32 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 140 | 101 | 99 |
Figure S223. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S224. Gene #35: 'del_2q37.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 5(2Q37.1) MUTATED | 38 | 70 | 17 | 21 | 7 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 83 | 64 | 104 | 41 | 30 |
Figure S224. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S225. Gene #35: 'del_2q37.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 5(2Q37.1) MUTATED | 34 | 54 | 56 | 9 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 55 | 64 | 143 | 60 |
Figure S225. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S226. Gene #35: 'del_2q37.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 5(2Q37.1) MUTATED | 11 | 45 | 50 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 78 | 84 | 66 |
Figure S226. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S227. Gene #35: 'del_2q37.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 5(2Q37.1) MUTATED | 4 | 69 | 33 |
| DEL PEAK 5(2Q37.1) WILD-TYPE | 35 | 82 | 111 |
Figure S227. Get High-res Image Gene #35: 'del_2q37.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00172 (Fisher's exact test), Q value = 0.006
Table S228. Gene #36: 'del_3p25.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 6(3P25.3) MUTATED | 133 | 146 | 119 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 49 | 20 | 34 |
Figure S228. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S229. Gene #36: 'del_3p25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 6(3P25.3) MUTATED | 105 | 109 | 78 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 47 | 13 | 15 |
Figure S229. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00287 (Fisher's exact test), Q value = 0.0092
Table S230. Gene #36: 'del_3p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 6(3P25.3) MUTATED | 87 | 133 | 123 | 53 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 26 | 19 | 31 | 26 |
Figure S230. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00029 (Fisher's exact test), Q value = 0.0014
Table S231. Gene #36: 'del_3p25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 6(3P25.3) MUTATED | 141 | 165 | 90 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 37 | 24 | 41 |
Figure S231. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00826 (Fisher's exact test), Q value = 0.022
Table S232. Gene #36: 'del_3p25.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 6(3P25.3) MUTATED | 94 | 116 | 83 | 52 | 31 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 27 | 18 | 38 | 10 | 6 |
Figure S232. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00086
Table S233. Gene #36: 'del_3p25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 6(3P25.3) MUTATED | 76 | 94 | 166 | 40 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 13 | 24 | 33 | 29 |
Figure S233. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.016 (Fisher's exact test), Q value = 0.037
Table S234. Gene #36: 'del_3p25.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 6(3P25.3) MUTATED | 62 | 103 | 100 |
| DEL PEAK 6(3P25.3) WILD-TYPE | 27 | 26 | 16 |
Figure S234. Get High-res Image Gene #36: 'del_3p25.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S235. Gene #37: 'del_3p13' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 7(3P13) MUTATED | 136 | 157 | 141 |
| DEL PEAK 7(3P13) WILD-TYPE | 46 | 9 | 12 |
Figure S235. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00039
Table S236. Gene #37: 'del_3p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 7(3P13) MUTATED | 117 | 116 | 85 |
| DEL PEAK 7(3P13) WILD-TYPE | 35 | 6 | 8 |
Figure S236. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00111 (Fisher's exact test), Q value = 0.0042
Table S237. Gene #37: 'del_3p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 7(3P13) MUTATED | 48 | 27 | 49 | 43 |
| DEL PEAK 7(3P13) WILD-TYPE | 6 | 14 | 3 | 4 |
Figure S237. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00076 (Fisher's exact test), Q value = 0.0031
Table S238. Gene #37: 'del_3p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 7(3P13) MUTATED | 101 | 140 | 133 | 57 |
| DEL PEAK 7(3P13) WILD-TYPE | 12 | 12 | 21 | 22 |
Figure S238. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00082 (Fisher's exact test), Q value = 0.0033
Table S239. Gene #37: 'del_3p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 7(3P13) MUTATED | 154 | 175 | 102 |
| DEL PEAK 7(3P13) WILD-TYPE | 24 | 14 | 29 |
Figure S239. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00206 (Fisher's exact test), Q value = 0.007
Table S240. Gene #37: 'del_3p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 7(3P13) MUTATED | 105 | 125 | 92 | 56 | 33 |
| DEL PEAK 7(3P13) WILD-TYPE | 16 | 9 | 29 | 6 | 4 |
Figure S240. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S241. Gene #37: 'del_3p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 7(3P13) MUTATED | 79 | 104 | 185 | 43 |
| DEL PEAK 7(3P13) WILD-TYPE | 10 | 14 | 14 | 26 |
Figure S241. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00075 (Fisher's exact test), Q value = 0.0031
Table S242. Gene #37: 'del_3p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 7(3P13) MUTATED | 67 | 116 | 108 |
| DEL PEAK 7(3P13) WILD-TYPE | 22 | 13 | 8 |
Figure S242. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.001
Table S243. Gene #37: 'del_3p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 7(3P13) MUTATED | 34 | 143 | 114 |
| DEL PEAK 7(3P13) WILD-TYPE | 5 | 8 | 30 |
Figure S243. Get High-res Image Gene #37: 'del_3p13' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S244. Gene #38: 'del_3p12.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 8(3P12.3) MUTATED | 134 | 156 | 137 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 48 | 10 | 16 |
Figure S244. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S245. Gene #38: 'del_3p12.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 8(3P12.3) MUTATED | 114 | 115 | 83 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 38 | 7 | 10 |
Figure S245. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00153 (Fisher's exact test), Q value = 0.0054
Table S246. Gene #38: 'del_3p12.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 8(3P12.3) MUTATED | 46 | 27 | 49 | 43 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 8 | 14 | 3 | 4 |
Figure S246. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.002
Table S247. Gene #38: 'del_3p12.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 8(3P12.3) MUTATED | 99 | 138 | 132 | 55 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 14 | 14 | 22 | 24 |
Figure S247. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00493 (Fisher's exact test), Q value = 0.014
Table S248. Gene #38: 'del_3p12.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 8(3P12.3) MUTATED | 152 | 171 | 101 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 26 | 18 | 30 |
Figure S248. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0233 (Fisher's exact test), Q value = 0.051
Table S249. Gene #38: 'del_3p12.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 8(3P12.3) MUTATED | 103 | 121 | 92 | 56 | 32 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 18 | 13 | 29 | 6 | 5 |
Figure S249. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S250. Gene #38: 'del_3p12.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 8(3P12.3) MUTATED | 79 | 103 | 180 | 42 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 10 | 15 | 19 | 27 |
Figure S250. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4e-04 (Fisher's exact test), Q value = 0.0018
Table S251. Gene #38: 'del_3p12.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 8(3P12.3) MUTATED | 65 | 114 | 107 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 24 | 15 | 9 |
Figure S251. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0011 (Fisher's exact test), Q value = 0.0042
Table S252. Gene #38: 'del_3p12.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 8(3P12.3) MUTATED | 34 | 140 | 112 |
| DEL PEAK 8(3P12.3) WILD-TYPE | 5 | 11 | 32 |
Figure S252. Get High-res Image Gene #38: 'del_3p12.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S253. Gene #39: 'del_3p12.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 9(3P12.3) MUTATED | 133 | 153 | 135 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 49 | 13 | 18 |
Figure S253. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00072
Table S254. Gene #39: 'del_3p12.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 9(3P12.3) MUTATED | 113 | 114 | 81 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 39 | 8 | 12 |
Figure S254. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00653 (Fisher's exact test), Q value = 0.018
Table S255. Gene #39: 'del_3p12.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 9(3P12.3) MUTATED | 45 | 27 | 48 | 42 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 9 | 14 | 4 | 5 |
Figure S255. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00273 (Fisher's exact test), Q value = 0.0088
Table S256. Gene #39: 'del_3p12.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 9(3P12.3) MUTATED | 96 | 136 | 131 | 55 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 17 | 16 | 23 | 24 |
Figure S256. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00769 (Fisher's exact test), Q value = 0.02
Table S257. Gene #39: 'del_3p12.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 9(3P12.3) MUTATED | 149 | 169 | 100 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 29 | 20 | 31 |
Figure S257. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0257 (Fisher's exact test), Q value = 0.056
Table S258. Gene #39: 'del_3p12.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 9(3P12.3) MUTATED | 102 | 118 | 90 | 56 | 32 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 19 | 16 | 31 | 6 | 5 |
Figure S258. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S259. Gene #39: 'del_3p12.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 9(3P12.3) MUTATED | 79 | 101 | 176 | 42 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 10 | 17 | 23 | 27 |
Figure S259. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00221 (Fisher's exact test), Q value = 0.0074
Table S260. Gene #39: 'del_3p12.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 9(3P12.3) MUTATED | 65 | 113 | 105 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 24 | 16 | 11 |
Figure S260. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00301 (Fisher's exact test), Q value = 0.0095
Table S261. Gene #39: 'del_3p12.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 9(3P12.3) MUTATED | 34 | 138 | 111 |
| DEL PEAK 9(3P12.3) WILD-TYPE | 5 | 13 | 33 |
Figure S261. Get High-res Image Gene #39: 'del_3p12.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00093
Table S262. Gene #41: 'del_4p15.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 11(4P15.2) MUTATED | 31 | 41 | 12 | 13 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 11 | 11 | 20 | 15 |
Figure S262. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S263. Gene #41: 'del_4p15.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 11(4P15.2) MUTATED | 34 | 44 | 19 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 13 | 12 | 32 |
Figure S263. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S264. Gene #41: 'del_4p15.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 11(4P15.2) MUTATED | 88 | 136 | 93 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 94 | 30 | 60 |
Figure S264. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S265. Gene #41: 'del_4p15.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 11(4P15.2) MUTATED | 73 | 95 | 64 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 79 | 27 | 29 |
Figure S265. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00014 (Fisher's exact test), Q value = 0.00082
Table S266. Gene #41: 'del_4p15.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 11(4P15.2) MUTATED | 74 | 116 | 83 | 43 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 39 | 36 | 71 | 36 |
Figure S266. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S267. Gene #41: 'del_4p15.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 11(4P15.2) MUTATED | 106 | 147 | 63 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 72 | 42 | 68 |
Figure S267. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00204 (Fisher's exact test), Q value = 0.0069
Table S268. Gene #41: 'del_4p15.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 11(4P15.2) MUTATED | 81 | 101 | 63 | 38 | 21 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 40 | 33 | 58 | 24 | 16 |
Figure S268. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00019 (Fisher's exact test), Q value = 0.001
Table S269. Gene #41: 'del_4p15.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 11(4P15.2) MUTATED | 43 | 80 | 89 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 46 | 49 | 27 |
Figure S269. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S270. Gene #41: 'del_4p15.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 11(4P15.2) MUTATED | 19 | 116 | 77 |
| DEL PEAK 11(4P15.2) WILD-TYPE | 20 | 35 | 67 |
Figure S270. Get High-res Image Gene #41: 'del_4p15.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00297 (Fisher's exact test), Q value = 0.0095
Table S271. Gene #42: 'del_4q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 12(4Q22.1) MUTATED | 29 | 38 | 11 | 16 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 13 | 14 | 21 | 12 |
Figure S271. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00474 (Fisher's exact test), Q value = 0.014
Table S272. Gene #42: 'del_4q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 12(4Q22.1) MUTATED | 31 | 41 | 22 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 16 | 15 | 29 |
Figure S272. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S273. Gene #42: 'del_4q22.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 12(4Q22.1) MUTATED | 82 | 123 | 80 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 100 | 43 | 73 |
Figure S273. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00103 (Fisher's exact test), Q value = 0.0039
Table S274. Gene #42: 'del_4q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 12(4Q22.1) MUTATED | 68 | 82 | 52 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 84 | 40 | 41 |
Figure S274. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00022 (Fisher's exact test), Q value = 0.0012
Table S275. Gene #42: 'del_4q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 12(4Q22.1) MUTATED | 61 | 107 | 82 | 33 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 52 | 45 | 72 | 46 |
Figure S275. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0147 (Fisher's exact test), Q value = 0.035
Table S276. Gene #42: 'del_4q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 12(4Q22.1) MUTATED | 97 | 122 | 64 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 81 | 67 | 67 |
Figure S276. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0164 (Fisher's exact test), Q value = 0.038
Table S277. Gene #42: 'del_4q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 12(4Q22.1) MUTATED | 79 | 77 | 54 | 39 | 23 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 42 | 57 | 67 | 23 | 14 |
Figure S277. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00568 (Fisher's exact test), Q value = 0.016
Table S278. Gene #42: 'del_4q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 12(4Q22.1) MUTATED | 61 | 67 | 116 | 28 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 28 | 51 | 83 | 41 |
Figure S278. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0178 (Fisher's exact test), Q value = 0.041
Table S279. Gene #42: 'del_4q22.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 12(4Q22.1) MUTATED | 22 | 95 | 67 |
| DEL PEAK 12(4Q22.1) WILD-TYPE | 17 | 56 | 77 |
Figure S279. Get High-res Image Gene #42: 'del_4q22.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00651 (Fisher's exact test), Q value = 0.018
Table S280. Gene #43: 'del_4q32.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 13(4Q32.3) MUTATED | 29 | 42 | 14 | 20 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 13 | 10 | 18 | 8 |
Figure S280. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0194 (Fisher's exact test), Q value = 0.044
Table S281. Gene #43: 'del_4q32.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 13(4Q32.3) MUTATED | 32 | 45 | 28 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 15 | 11 | 23 |
Figure S281. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S282. Gene #43: 'del_4q32.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 13(4Q32.3) MUTATED | 95 | 141 | 93 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 87 | 25 | 60 |
Figure S282. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S283. Gene #43: 'del_4q32.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 13(4Q32.3) MUTATED | 80 | 94 | 65 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 72 | 28 | 28 |
Figure S283. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S284. Gene #43: 'del_4q32.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 13(4Q32.3) MUTATED | 72 | 122 | 94 | 39 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 41 | 30 | 60 | 40 |
Figure S284. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00029 (Fisher's exact test), Q value = 0.0014
Table S285. Gene #43: 'del_4q32.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 13(4Q32.3) MUTATED | 110 | 144 | 73 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 68 | 45 | 58 |
Figure S285. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00073 (Fisher's exact test), Q value = 0.003
Table S286. Gene #43: 'del_4q32.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 13(4Q32.3) MUTATED | 85 | 95 | 60 | 46 | 28 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 36 | 39 | 61 | 16 | 9 |
Figure S286. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00252 (Fisher's exact test), Q value = 0.0083
Table S287. Gene #43: 'del_4q32.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 13(4Q32.3) MUTATED | 66 | 75 | 140 | 33 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 23 | 43 | 59 | 36 |
Figure S287. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00393 (Fisher's exact test), Q value = 0.012
Table S288. Gene #43: 'del_4q32.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 13(4Q32.3) MUTATED | 48 | 82 | 88 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 41 | 47 | 28 |
Figure S288. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S289. Gene #43: 'del_4q32.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 13(4Q32.3) MUTATED | 27 | 120 | 71 |
| DEL PEAK 13(4Q32.3) WILD-TYPE | 12 | 31 | 73 |
Figure S289. Get High-res Image Gene #43: 'del_4q32.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S290. Gene #44: 'del_4q35.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 14(4Q35.2) MUTATED | 98 | 140 | 93 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 84 | 26 | 60 |
Figure S290. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S291. Gene #44: 'del_4q35.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 14(4Q35.2) MUTATED | 79 | 96 | 64 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 73 | 26 | 29 |
Figure S291. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S292. Gene #44: 'del_4q35.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 14(4Q35.2) MUTATED | 70 | 122 | 98 | 39 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 43 | 30 | 56 | 40 |
Figure S292. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00344 (Fisher's exact test), Q value = 0.01
Table S293. Gene #44: 'del_4q35.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 14(4Q35.2) MUTATED | 113 | 141 | 75 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 65 | 48 | 56 |
Figure S293. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00054 (Fisher's exact test), Q value = 0.0023
Table S294. Gene #44: 'del_4q35.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 14(4Q35.2) MUTATED | 85 | 91 | 61 | 49 | 28 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 36 | 43 | 60 | 13 | 9 |
Figure S294. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00743 (Fisher's exact test), Q value = 0.02
Table S295. Gene #44: 'del_4q35.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 14(4Q35.2) MUTATED | 67 | 74 | 138 | 35 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 22 | 44 | 61 | 34 |
Figure S295. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0485 (Fisher's exact test), Q value = 0.095
Table S296. Gene #44: 'del_4q35.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 14(4Q35.2) MUTATED | 51 | 82 | 85 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 38 | 47 | 31 |
Figure S296. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S297. Gene #44: 'del_4q35.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 14(4Q35.2) MUTATED | 28 | 117 | 73 |
| DEL PEAK 14(4Q35.2) WILD-TYPE | 11 | 34 | 71 |
Figure S297. Get High-res Image Gene #44: 'del_4q35.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S298. Gene #45: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 15(5Q12.1) MUTATED | 99 | 136 | 134 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 83 | 30 | 19 |
Figure S298. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S299. Gene #45: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 15(5Q12.1) MUTATED | 91 | 100 | 77 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 61 | 22 | 16 |
Figure S299. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00201 (Fisher's exact test), Q value = 0.0068
Table S300. Gene #45: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 15(5Q12.1) MUTATED | 78 | 126 | 114 | 48 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 35 | 26 | 40 | 31 |
Figure S300. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00151 (Fisher's exact test), Q value = 0.0054
Table S301. Gene #45: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 15(5Q12.1) MUTATED | 131 | 153 | 82 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 47 | 36 | 49 |
Figure S301. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0114 (Fisher's exact test), Q value = 0.029
Table S302. Gene #45: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 15(5Q12.1) MUTATED | 92 | 99 | 81 | 46 | 35 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 29 | 35 | 40 | 16 | 2 |
Figure S302. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S303. Gene #45: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 15(5Q12.1) MUTATED | 66 | 82 | 167 | 38 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 23 | 36 | 32 | 31 |
Figure S303. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00313 (Fisher's exact test), Q value = 0.0098
Table S304. Gene #45: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 15(5Q12.1) MUTATED | 31 | 122 | 92 |
| DEL PEAK 15(5Q12.1) WILD-TYPE | 8 | 29 | 52 |
Figure S304. Get High-res Image Gene #45: 'del_5q12.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S305. Gene #46: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 16(5Q31.1) MUTATED | 110 | 138 | 138 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 72 | 28 | 15 |
Figure S305. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S306. Gene #46: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 16(5Q31.1) MUTATED | 98 | 102 | 84 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 54 | 20 | 9 |
Figure S306. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0159 (Fisher's exact test), Q value = 0.037
Table S307. Gene #46: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 16(5Q31.1) MUTATED | 85 | 129 | 116 | 53 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 28 | 23 | 38 | 26 |
Figure S307. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00728 (Fisher's exact test), Q value = 0.019
Table S308. Gene #46: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 16(5Q31.1) MUTATED | 137 | 157 | 89 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 41 | 32 | 42 |
Figure S308. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00386 (Fisher's exact test), Q value = 0.012
Table S309. Gene #46: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 16(5Q31.1) MUTATED | 93 | 108 | 85 | 46 | 36 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 28 | 26 | 36 | 16 | 1 |
Figure S309. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S310. Gene #46: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 16(5Q31.1) MUTATED | 69 | 90 | 171 | 38 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 20 | 28 | 28 | 31 |
Figure S310. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00102 (Fisher's exact test), Q value = 0.0039
Table S311. Gene #46: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 16(5Q31.1) MUTATED | 33 | 128 | 97 |
| DEL PEAK 16(5Q31.1) WILD-TYPE | 6 | 23 | 47 |
Figure S311. Get High-res Image Gene #46: 'del_5q31.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00027 (Fisher's exact test), Q value = 0.0014
Table S312. Gene #47: 'del_6p25.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 17(6P25.3) MUTATED | 42 | 63 | 29 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 140 | 103 | 124 |
Figure S312. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S313. Gene #47: 'del_6p25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 17(6P25.3) MUTATED | 29 | 55 | 20 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 123 | 67 | 73 |
Figure S313. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00673 (Fisher's exact test), Q value = 0.018
Table S314. Gene #47: 'del_6p25.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 17(6P25.3) MUTATED | 14 | 14 | 18 | 4 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 40 | 27 | 34 | 43 |
Figure S314. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S315. Gene #47: 'del_6p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 17(6P25.3) MUTATED | 30 | 63 | 23 | 17 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 83 | 89 | 131 | 62 |
Figure S315. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S316. Gene #47: 'del_6p25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 17(6P25.3) MUTATED | 37 | 78 | 18 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 141 | 111 | 113 |
Figure S316. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00082 (Fisher's exact test), Q value = 0.0033
Table S317. Gene #47: 'del_6p25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 17(6P25.3) MUTATED | 39 | 32 | 45 | 12 |
| DEL PEAK 17(6P25.3) WILD-TYPE | 50 | 86 | 154 | 57 |
Figure S317. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0388 (Fisher's exact test), Q value = 0.078
Table S318. Gene #48: 'del_6q22.31' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 18(6Q22.31) MUTATED | 8 | 20 | 4 | 6 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 34 | 32 | 28 | 22 |
Figure S318. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00313 (Fisher's exact test), Q value = 0.0098
Table S319. Gene #48: 'del_6q22.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 18(6Q22.31) MUTATED | 10 | 22 | 6 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 37 | 34 | 45 |
Figure S319. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.001
Table S320. Gene #48: 'del_6q22.31' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 18(6Q22.31) MUTATED | 32 | 59 | 31 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 150 | 107 | 122 |
Figure S320. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00074 (Fisher's exact test), Q value = 0.0031
Table S321. Gene #48: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 18(6Q22.31) MUTATED | 29 | 46 | 17 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 123 | 76 | 76 |
Figure S321. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00084 (Fisher's exact test), Q value = 0.0033
Table S322. Gene #48: 'del_6q22.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 18(6Q22.31) MUTATED | 20 | 55 | 29 | 17 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 93 | 97 | 125 | 62 |
Figure S322. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.017 (Fisher's exact test), Q value = 0.039
Table S323. Gene #48: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 18(6Q22.31) MUTATED | 38 | 59 | 24 |
| DEL PEAK 18(6Q22.31) WILD-TYPE | 140 | 130 | 107 |
Figure S323. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0416 (Fisher's exact test), Q value = 0.083
Table S324. Gene #49: 'del_6q26' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 19(6Q26) MUTATED | 8 | 21 | 5 | 6 |
| DEL PEAK 19(6Q26) WILD-TYPE | 34 | 31 | 27 | 22 |
Figure S324. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00462 (Fisher's exact test), Q value = 0.013
Table S325. Gene #49: 'del_6q26' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 19(6Q26) MUTATED | 10 | 23 | 7 |
| DEL PEAK 19(6Q26) WILD-TYPE | 37 | 33 | 44 |
Figure S325. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.0011
Table S326. Gene #49: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 19(6Q26) MUTATED | 35 | 64 | 35 |
| DEL PEAK 19(6Q26) WILD-TYPE | 147 | 102 | 118 |
Figure S326. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S327. Gene #49: 'del_6q26' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 19(6Q26) MUTATED | 29 | 52 | 21 |
| DEL PEAK 19(6Q26) WILD-TYPE | 123 | 70 | 72 |
Figure S327. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00046 (Fisher's exact test), Q value = 0.0021
Table S328. Gene #49: 'del_6q26' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 19(6Q26) MUTATED | 23 | 60 | 34 | 16 |
| DEL PEAK 19(6Q26) WILD-TYPE | 90 | 92 | 120 | 63 |
Figure S328. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00607 (Fisher's exact test), Q value = 0.017
Table S329. Gene #49: 'del_6q26' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 19(6Q26) MUTATED | 38 | 66 | 29 |
| DEL PEAK 19(6Q26) WILD-TYPE | 140 | 123 | 102 |
Figure S329. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0173 (Fisher's exact test), Q value = 0.04
Table S330. Gene #49: 'del_6q26' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 19(6Q26) MUTATED | 38 | 41 | 20 | 21 | 7 |
| DEL PEAK 19(6Q26) WILD-TYPE | 83 | 93 | 101 | 41 | 30 |
Figure S330. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0328 (Fisher's exact test), Q value = 0.068
Table S331. Gene #49: 'del_6q26' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 19(6Q26) MUTATED | 15 | 35 | 38 |
| DEL PEAK 19(6Q26) WILD-TYPE | 74 | 94 | 78 |
Figure S331. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00113 (Fisher's exact test), Q value = 0.0042
Table S332. Gene #50: 'del_7q11.22' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 20(7Q11.22) MUTATED | 13 | 9 | 26 |
| DEL PEAK 20(7Q11.22) WILD-TYPE | 169 | 157 | 127 |
Figure S332. Get High-res Image Gene #50: 'del_7q11.22' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00191 (Fisher's exact test), Q value = 0.0066
Table S333. Gene #50: 'del_7q11.22' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 20(7Q11.22) MUTATED | 7 | 8 | 27 | 6 |
| DEL PEAK 20(7Q11.22) WILD-TYPE | 106 | 144 | 127 | 73 |
Figure S333. Get High-res Image Gene #50: 'del_7q11.22' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00101 (Fisher's exact test), Q value = 0.0039
Table S334. Gene #50: 'del_7q11.22' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 20(7Q11.22) MUTATED | 12 | 12 | 24 |
| DEL PEAK 20(7Q11.22) WILD-TYPE | 166 | 177 | 107 |
Figure S334. Get High-res Image Gene #50: 'del_7q11.22' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0487 (Fisher's exact test), Q value = 0.095
Table S335. Gene #51: 'del_7q36.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 21(7Q36.3) MUTATED | 14 | 6 | 11 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 33 | 50 | 40 |
Figure S335. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00407 (Fisher's exact test), Q value = 0.012
Table S336. Gene #51: 'del_7q36.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 21(7Q36.3) MUTATED | 39 | 22 | 43 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 143 | 144 | 110 |
Figure S336. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S337. Gene #51: 'del_7q36.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 21(7Q36.3) MUTATED | 28 | 18 | 47 | 11 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 85 | 134 | 107 | 68 |
Figure S337. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00114 (Fisher's exact test), Q value = 0.0043
Table S338. Gene #51: 'del_7q36.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 21(7Q36.3) MUTATED | 44 | 24 | 36 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 134 | 165 | 95 |
Figure S338. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00412 (Fisher's exact test), Q value = 0.012
Table S339. Gene #51: 'del_7q36.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 21(7Q36.3) MUTATED | 14 | 29 | 49 | 5 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 75 | 89 | 150 | 64 |
Figure S339. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.047 (Fisher's exact test), Q value = 0.093
Table S340. Gene #51: 'del_7q36.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 21(7Q36.3) MUTATED | 14 | 31 | 25 |
| DEL PEAK 21(7Q36.3) WILD-TYPE | 25 | 120 | 119 |
Figure S340. Get High-res Image Gene #51: 'del_7q36.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S341. Gene #52: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 22(8P23.2) MUTATED | 101 | 120 | 120 |
| DEL PEAK 22(8P23.2) WILD-TYPE | 81 | 46 | 33 |
Figure S341. Get High-res Image Gene #52: 'del_8p23.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0157 (Fisher's exact test), Q value = 0.037
Table S342. Gene #52: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 22(8P23.2) MUTATED | 90 | 91 | 67 |
| DEL PEAK 22(8P23.2) WILD-TYPE | 62 | 31 | 26 |
Figure S342. Get High-res Image Gene #52: 'del_8p23.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0406 (Fisher's exact test), Q value = 0.081
Table S343. Gene #52: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 22(8P23.2) MUTATED | 30 | 108 | 86 |
| DEL PEAK 22(8P23.2) WILD-TYPE | 9 | 43 | 58 |
Figure S343. Get High-res Image Gene #52: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0104 (Fisher's exact test), Q value = 0.026
Table S344. Gene #53: 'del_9p23' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 23(9P23) MUTATED | 36 | 30 | 19 | 16 |
| DEL PEAK 23(9P23) WILD-TYPE | 6 | 22 | 13 | 12 |
Figure S344. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00184 (Fisher's exact test), Q value = 0.0064
Table S345. Gene #53: 'del_9p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 23(9P23) MUTATED | 40 | 30 | 31 |
| DEL PEAK 23(9P23) WILD-TYPE | 7 | 26 | 20 |
Figure S345. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S346. Gene #53: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 23(9P23) MUTATED | 102 | 101 | 129 |
| DEL PEAK 23(9P23) WILD-TYPE | 80 | 65 | 24 |
Figure S346. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0304 (Fisher's exact test), Q value = 0.064
Table S347. Gene #53: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 23(9P23) MUTATED | 94 | 78 | 72 |
| DEL PEAK 23(9P23) WILD-TYPE | 58 | 44 | 21 |
Figure S347. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.00093
Table S348. Gene #53: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 23(9P23) MUTATED | 89 | 87 | 110 | 43 |
| DEL PEAK 23(9P23) WILD-TYPE | 24 | 65 | 44 | 36 |
Figure S348. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00098 (Fisher's exact test), Q value = 0.0038
Table S349. Gene #53: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 23(9P23) MUTATED | 136 | 112 | 81 |
| DEL PEAK 23(9P23) WILD-TYPE | 42 | 77 | 50 |
Figure S349. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0107 (Fisher's exact test), Q value = 0.027
Table S350. Gene #53: 'del_9p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 23(9P23) MUTATED | 78 | 97 | 74 | 36 | 32 |
| DEL PEAK 23(9P23) WILD-TYPE | 43 | 37 | 47 | 26 | 5 |
Figure S350. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00086
Table S351. Gene #53: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 23(9P23) MUTATED | 50 | 81 | 151 | 35 |
| DEL PEAK 23(9P23) WILD-TYPE | 39 | 37 | 48 | 34 |
Figure S351. Get High-res Image Gene #53: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S352. Gene #54: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 24(9P21.3) MUTATED | 121 | 130 | 137 |
| DEL PEAK 24(9P21.3) WILD-TYPE | 61 | 36 | 16 |
Figure S352. Get High-res Image Gene #54: 'del_9p21.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00063 (Fisher's exact test), Q value = 0.0027
Table S353. Gene #54: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 24(9P21.3) MUTATED | 100 | 112 | 122 | 51 |
| DEL PEAK 24(9P21.3) WILD-TYPE | 13 | 40 | 32 | 28 |
Figure S353. Get High-res Image Gene #54: 'del_9p21.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0158 (Fisher's exact test), Q value = 0.037
Table S354. Gene #54: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 24(9P21.3) MUTATED | 150 | 141 | 94 |
| DEL PEAK 24(9P21.3) WILD-TYPE | 28 | 48 | 37 |
Figure S354. Get High-res Image Gene #54: 'del_9p21.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0115 (Fisher's exact test), Q value = 0.029
Table S355. Gene #54: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 24(9P21.3) MUTATED | 68 | 95 | 165 | 44 |
| DEL PEAK 24(9P21.3) WILD-TYPE | 21 | 23 | 34 | 25 |
Figure S355. Get High-res Image Gene #54: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0228 (Fisher's exact test), Q value = 0.05
Table S356. Gene #54: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 24(9P21.3) MUTATED | 36 | 121 | 105 |
| DEL PEAK 24(9P21.3) WILD-TYPE | 3 | 30 | 39 |
Figure S356. Get High-res Image Gene #54: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S357. Gene #55: 'del_9p21.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 25(9P21.1) MUTATED | 106 | 97 | 123 |
| DEL PEAK 25(9P21.1) WILD-TYPE | 76 | 69 | 30 |
Figure S357. Get High-res Image Gene #55: 'del_9p21.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3e-04 (Fisher's exact test), Q value = 0.0015
Table S358. Gene #55: 'del_9p21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 25(9P21.1) MUTATED | 88 | 85 | 107 | 43 |
| DEL PEAK 25(9P21.1) WILD-TYPE | 25 | 67 | 47 | 36 |
Figure S358. Get High-res Image Gene #55: 'del_9p21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00033 (Fisher's exact test), Q value = 0.0016
Table S359. Gene #55: 'del_9p21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 25(9P21.1) MUTATED | 135 | 106 | 82 |
| DEL PEAK 25(9P21.1) WILD-TYPE | 43 | 83 | 49 |
Figure S359. Get High-res Image Gene #55: 'del_9p21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00835 (Fisher's exact test), Q value = 0.022
Table S360. Gene #55: 'del_9p21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 25(9P21.1) MUTATED | 51 | 84 | 140 | 36 |
| DEL PEAK 25(9P21.1) WILD-TYPE | 38 | 34 | 59 | 33 |
Figure S360. Get High-res Image Gene #55: 'del_9p21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00027 (Fisher's exact test), Q value = 0.0014
Table S361. Gene #56: 'del_9q21.11' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 26(9Q21.11) MUTATED | 28 | 13 | 19 | 15 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 14 | 39 | 13 | 13 |
Figure S361. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S362. Gene #56: 'del_9q21.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 26(9Q21.11) MUTATED | 31 | 14 | 30 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 16 | 42 | 21 |
Figure S362. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S363. Gene #56: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 26(9Q21.11) MUTATED | 88 | 53 | 110 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 94 | 113 | 43 |
Figure S363. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S364. Gene #56: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 26(9Q21.11) MUTATED | 89 | 33 | 62 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 63 | 89 | 31 |
Figure S364. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S365. Gene #56: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 26(9Q21.11) MUTATED | 73 | 36 | 100 | 40 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 40 | 116 | 54 | 39 |
Figure S365. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S366. Gene #56: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 26(9Q21.11) MUTATED | 125 | 46 | 78 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 53 | 143 | 53 |
Figure S366. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S367. Gene #56: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 26(9Q21.11) MUTATED | 58 | 62 | 71 | 17 | 29 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 63 | 72 | 50 | 45 | 8 |
Figure S367. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S368. Gene #56: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 26(9Q21.11) MUTATED | 23 | 54 | 129 | 31 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 66 | 64 | 70 | 38 |
Figure S368. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00963 (Fisher's exact test), Q value = 0.025
Table S369. Gene #56: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 26(9Q21.11) MUTATED | 29 | 72 | 72 |
| DEL PEAK 26(9Q21.11) WILD-TYPE | 10 | 79 | 72 |
Figure S369. Get High-res Image Gene #56: 'del_9q21.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S370. Gene #57: 'del_10p15.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 27(10P15.2) MUTATED | 58 | 94 | 67 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 124 | 72 | 86 |
Figure S370. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S371. Gene #57: 'del_10p15.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 27(10P15.2) MUTATED | 47 | 88 | 29 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 105 | 34 | 64 |
Figure S371. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S372. Gene #57: 'del_10p15.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 27(10P15.2) MUTATED | 39 | 94 | 60 | 25 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 74 | 58 | 94 | 54 |
Figure S372. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00072
Table S373. Gene #57: 'del_10p15.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 27(10P15.2) MUTATED | 66 | 106 | 46 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 112 | 83 | 85 |
Figure S373. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S374. Gene #57: 'del_10p15.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 27(10P15.2) MUTATED | 53 | 64 | 35 | 40 | 20 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 68 | 70 | 86 | 22 | 17 |
Figure S374. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S375. Gene #57: 'del_10p15.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 27(10P15.2) MUTATED | 63 | 42 | 91 | 16 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 26 | 76 | 108 | 53 |
Figure S375. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0239 (Fisher's exact test), Q value = 0.052
Table S376. Gene #57: 'del_10p15.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 27(10P15.2) MUTATED | 30 | 54 | 61 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 59 | 75 | 55 |
Figure S376. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0102 (Fisher's exact test), Q value = 0.026
Table S377. Gene #57: 'del_10p15.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 27(10P15.2) MUTATED | 19 | 77 | 49 |
| DEL PEAK 27(10P15.2) WILD-TYPE | 20 | 74 | 95 |
Figure S377. Get High-res Image Gene #57: 'del_10p15.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00318 (Fisher's exact test), Q value = 0.0099
Table S378. Gene #58: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 28(10Q23.31) MUTATED | 17 | 38 | 13 | 13 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 25 | 14 | 19 | 15 |
Figure S378. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00091 (Fisher's exact test), Q value = 0.0036
Table S379. Gene #58: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 28(10Q23.31) MUTATED | 17 | 40 | 24 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 30 | 16 | 27 |
Figure S379. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S380. Gene #58: 'del_10q23.31' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 28(10Q23.31) MUTATED | 74 | 119 | 75 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 108 | 47 | 78 |
Figure S380. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S381. Gene #58: 'del_10q23.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 28(10Q23.31) MUTATED | 57 | 92 | 49 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 95 | 30 | 44 |
Figure S381. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S382. Gene #58: 'del_10q23.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 28(10Q23.31) MUTATED | 49 | 114 | 69 | 35 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 64 | 38 | 85 | 44 |
Figure S382. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S383. Gene #58: 'del_10q23.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 28(10Q23.31) MUTATED | 78 | 135 | 54 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 100 | 54 | 77 |
Figure S383. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00126 (Fisher's exact test), Q value = 0.0047
Table S384. Gene #58: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 28(10Q23.31) MUTATED | 60 | 83 | 49 | 42 | 20 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 61 | 51 | 72 | 20 | 17 |
Figure S384. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S385. Gene #58: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 28(10Q23.31) MUTATED | 64 | 51 | 112 | 27 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 25 | 67 | 87 | 42 |
Figure S385. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0222 (Fisher's exact test), Q value = 0.049
Table S386. Gene #58: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 28(10Q23.31) MUTATED | 38 | 69 | 72 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 51 | 60 | 44 |
Figure S386. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00028 (Fisher's exact test), Q value = 0.0014
Table S387. Gene #58: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 28(10Q23.31) MUTATED | 20 | 99 | 60 |
| DEL PEAK 28(10Q23.31) WILD-TYPE | 19 | 52 | 84 |
Figure S387. Get High-res Image Gene #58: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00048 (Fisher's exact test), Q value = 0.0021
Table S388. Gene #59: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 29(11P15.5) MUTATED | 30 | 21 | 9 | 18 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 12 | 31 | 23 | 10 |
Figure S388. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0118 (Fisher's exact test), Q value = 0.029
Table S389. Gene #59: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 29(11P15.5) MUTATED | 32 | 22 | 24 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 15 | 34 | 27 |
Figure S389. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S390. Gene #59: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 29(11P15.5) MUTATED | 63 | 80 | 102 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 119 | 86 | 51 |
Figure S390. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00309 (Fisher's exact test), Q value = 0.0097
Table S391. Gene #59: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 29(11P15.5) MUTATED | 61 | 57 | 58 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 91 | 65 | 35 |
Figure S391. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00034 (Fisher's exact test), Q value = 0.0016
Table S392. Gene #59: 'del_11p15.5' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 60 | 73 | 61 |
| DEL PEAK 29(11P15.5) MUTATED | 33 | 46 | 18 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 27 | 27 | 43 |
Figure S392. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S393. Gene #59: 'del_11p15.5' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 29(11P15.5) MUTATED | 28 | 15 | 38 | 16 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 26 | 26 | 14 | 31 |
Figure S393. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00664 (Fisher's exact test), Q value = 0.018
Table S394. Gene #59: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 29(11P15.5) MUTATED | 63 | 67 | 86 | 28 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 50 | 85 | 68 | 51 |
Figure S394. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00064 (Fisher's exact test), Q value = 0.0027
Table S395. Gene #59: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 29(11P15.5) MUTATED | 68 | 78 | 55 | 17 | 18 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 53 | 56 | 66 | 45 | 19 |
Figure S395. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00403 (Fisher's exact test), Q value = 0.012
Table S396. Gene #59: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 29(11P15.5) MUTATED | 24 | 84 | 56 |
| DEL PEAK 29(11P15.5) WILD-TYPE | 15 | 67 | 88 |
Figure S396. Get High-res Image Gene #59: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00138 (Fisher's exact test), Q value = 0.005
Table S397. Gene #60: 'del_11q22.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 30(11Q22.1) MUTATED | 42 | 68 | 52 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 140 | 98 | 101 |
Figure S397. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00079 (Fisher's exact test), Q value = 0.0032
Table S398. Gene #60: 'del_11q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 30(11Q22.1) MUTATED | 36 | 50 | 41 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 116 | 72 | 52 |
Figure S398. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.014 (Fisher's exact test), Q value = 0.034
Table S399. Gene #60: 'del_11q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 30(11Q22.1) MUTATED | 34 | 62 | 49 | 16 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 79 | 90 | 105 | 63 |
Figure S399. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0384 (Fisher's exact test), Q value = 0.078
Table S400. Gene #60: 'del_11q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 30(11Q22.1) MUTATED | 49 | 74 | 38 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 129 | 115 | 93 |
Figure S400. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00394 (Fisher's exact test), Q value = 0.012
Table S401. Gene #60: 'del_11q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 30(11Q22.1) MUTATED | 30 | 60 | 31 | 22 | 13 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 91 | 74 | 90 | 40 | 24 |
Figure S401. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.028 (Fisher's exact test), Q value = 0.06
Table S402. Gene #60: 'del_11q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 30(11Q22.1) MUTATED | 38 | 40 | 64 | 14 |
| DEL PEAK 30(11Q22.1) WILD-TYPE | 51 | 78 | 135 | 55 |
Figure S402. Get High-res Image Gene #60: 'del_11q22.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00215 (Fisher's exact test), Q value = 0.0072
Table S403. Gene #61: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 31(11Q25) MUTATED | 51 | 77 | 56 |
| DEL PEAK 31(11Q25) WILD-TYPE | 131 | 89 | 97 |
Figure S403. Get High-res Image Gene #61: 'del_11q25' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0177 (Fisher's exact test), Q value = 0.041
Table S404. Gene #61: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 31(11Q25) MUTATED | 37 | 67 | 60 | 19 |
| DEL PEAK 31(11Q25) WILD-TYPE | 76 | 85 | 94 | 60 |
Figure S404. Get High-res Image Gene #61: 'del_11q25' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.0321 (Fisher's exact test), Q value = 0.067
Table S405. Gene #61: 'del_11q25' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 31(11Q25) MUTATED | 37 | 63 | 36 | 23 | 13 |
| DEL PEAK 31(11Q25) WILD-TYPE | 84 | 71 | 85 | 39 | 24 |
Figure S405. Get High-res Image Gene #61: 'del_11q25' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00396 (Fisher's exact test), Q value = 0.012
Table S406. Gene #63: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 33(13Q12.11) MUTATED | 107 | 108 | 116 |
| DEL PEAK 33(13Q12.11) WILD-TYPE | 75 | 58 | 37 |
Figure S406. Get High-res Image Gene #63: 'del_13q12.11' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00425 (Fisher's exact test), Q value = 0.012
Table S407. Gene #63: 'del_13q12.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 33(13Q12.11) MUTATED | 47 | 90 | 86 |
| DEL PEAK 33(13Q12.11) WILD-TYPE | 42 | 39 | 30 |
Figure S407. Get High-res Image Gene #63: 'del_13q12.11' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00354 (Fisher's exact test), Q value = 0.011
Table S408. Gene #63: 'del_13q12.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 33(13Q12.11) MUTATED | 23 | 115 | 85 |
| DEL PEAK 33(13Q12.11) WILD-TYPE | 16 | 36 | 59 |
Figure S408. Get High-res Image Gene #63: 'del_13q12.11' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00331 (Fisher's exact test), Q value = 0.01
Table S409. Gene #64: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 34(13Q14.2) MUTATED | 112 | 112 | 120 |
| DEL PEAK 34(13Q14.2) WILD-TYPE | 70 | 54 | 33 |
Figure S409. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0303 (Fisher's exact test), Q value = 0.064
Table S410. Gene #64: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 34(13Q14.2) MUTATED | 91 | 88 | 69 |
| DEL PEAK 34(13Q14.2) WILD-TYPE | 61 | 34 | 24 |
Figure S410. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00162 (Fisher's exact test), Q value = 0.0057
Table S411. Gene #64: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 34(13Q14.2) MUTATED | 48 | 95 | 88 |
| DEL PEAK 34(13Q14.2) WILD-TYPE | 41 | 34 | 28 |
Figure S411. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0195 (Fisher's exact test), Q value = 0.044
Table S412. Gene #64: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 34(13Q14.2) MUTATED | 24 | 116 | 91 |
| DEL PEAK 34(13Q14.2) WILD-TYPE | 15 | 35 | 53 |
Figure S412. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0379 (Fisher's exact test), Q value = 0.077
Table S413. Gene #65: 'del_14q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 35(14Q11.2) MUTATED | 7 | 21 | 14 | 10 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 35 | 31 | 18 | 18 |
Figure S413. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0351 (Fisher's exact test), Q value = 0.072
Table S414. Gene #65: 'del_14q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 35(14Q11.2) MUTATED | 9 | 22 | 21 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 38 | 34 | 30 |
Figure S414. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.00016 (Fisher's exact test), Q value = 9e-04
Table S415. Gene #65: 'del_14q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 35(14Q11.2) MUTATED | 25 | 57 | 71 | 20 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 88 | 95 | 83 | 59 |
Figure S415. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 9e-04
Table S416. Gene #65: 'del_14q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 35(14Q11.2) MUTATED | 43 | 69 | 61 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 135 | 120 | 70 |
Figure S416. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0233 (Fisher's exact test), Q value = 0.051
Table S417. Gene #65: 'del_14q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 35(14Q11.2) MUTATED | 42 | 47 | 32 | 32 | 13 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 79 | 87 | 89 | 30 | 24 |
Figure S417. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00976 (Fisher's exact test), Q value = 0.025
Table S418. Gene #65: 'del_14q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 35(14Q11.2) MUTATED | 42 | 42 | 67 | 15 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 47 | 76 | 132 | 54 |
Figure S418. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00076 (Fisher's exact test), Q value = 0.0031
Table S419. Gene #65: 'del_14q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 35(14Q11.2) MUTATED | 18 | 57 | 45 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 71 | 72 | 71 |
Figure S419. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0341 (Fisher's exact test), Q value = 0.07
Table S420. Gene #65: 'del_14q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 35(14Q11.2) MUTATED | 7 | 60 | 53 |
| DEL PEAK 35(14Q11.2) WILD-TYPE | 32 | 91 | 91 |
Figure S420. Get High-res Image Gene #65: 'del_14q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0268 (Fisher's exact test), Q value = 0.058
Table S421. Gene #66: 'del_15q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 36(15Q11.2) MUTATED | 22 | 6 | 20 | 17 |
| DEL PEAK 36(15Q11.2) WILD-TYPE | 32 | 35 | 32 | 30 |
Figure S421. Get High-res Image Gene #66: 'del_15q11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.0243 (Fisher's exact test), Q value = 0.053
Table S422. Gene #66: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 36(15Q11.2) MUTATED | 50 | 50 | 30 | 15 | 14 |
| DEL PEAK 36(15Q11.2) WILD-TYPE | 71 | 84 | 91 | 47 | 23 |
Figure S422. Get High-res Image Gene #66: 'del_15q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0159 (Fisher's exact test), Q value = 0.037
Table S423. Gene #67: 'del_15q21.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 37(15Q21.1) MUTATED | 47 | 62 | 60 |
| DEL PEAK 37(15Q21.1) WILD-TYPE | 135 | 104 | 93 |
Figure S423. Get High-res Image Gene #67: 'del_15q21.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00721 (Fisher's exact test), Q value = 0.019
Table S424. Gene #67: 'del_15q21.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 37(15Q21.1) MUTATED | 23 | 5 | 20 | 17 |
| DEL PEAK 37(15Q21.1) WILD-TYPE | 31 | 36 | 32 | 30 |
Figure S424. Get High-res Image Gene #67: 'del_15q21.1' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.00322 (Fisher's exact test), Q value = 0.01
Table S425. Gene #67: 'del_15q21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 37(15Q21.1) MUTATED | 46 | 53 | 27 | 16 | 18 |
| DEL PEAK 37(15Q21.1) WILD-TYPE | 75 | 81 | 94 | 46 | 19 |
Figure S425. Get High-res Image Gene #67: 'del_15q21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00425 (Fisher's exact test), Q value = 0.012
Table S426. Gene #68: 'del_16p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 38(16P13.3) MUTATED | 51 | 69 | 67 |
| DEL PEAK 38(16P13.3) WILD-TYPE | 131 | 97 | 86 |
Figure S426. Get High-res Image Gene #68: 'del_16p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00926 (Fisher's exact test), Q value = 0.024
Table S427. Gene #68: 'del_16p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 38(16P13.3) MUTATED | 25 | 45 | 56 |
| DEL PEAK 38(16P13.3) WILD-TYPE | 64 | 84 | 60 |
Figure S427. Get High-res Image Gene #68: 'del_16p13.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0142 (Fisher's exact test), Q value = 0.034
Table S428. Gene #69: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 39(16Q23.1) MUTATED | 62 | 82 | 66 |
| DEL PEAK 39(16Q23.1) WILD-TYPE | 120 | 84 | 87 |
Figure S428. Get High-res Image Gene #69: 'del_16q23.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0381 (Fisher's exact test), Q value = 0.077
Table S429. Gene #69: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 39(16Q23.1) MUTATED | 61 | 88 | 59 |
| DEL PEAK 39(16Q23.1) WILD-TYPE | 117 | 101 | 72 |
Figure S429. Get High-res Image Gene #69: 'del_16q23.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00645 (Fisher's exact test), Q value = 0.018
Table S430. Gene #69: 'del_16q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 39(16Q23.1) MUTATED | 46 | 62 | 40 | 29 | 24 |
| DEL PEAK 39(16Q23.1) WILD-TYPE | 75 | 72 | 81 | 33 | 13 |
Figure S430. Get High-res Image Gene #69: 'del_16q23.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3e-04 (Fisher's exact test), Q value = 0.0015
Table S431. Gene #69: 'del_16q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 39(16Q23.1) MUTATED | 22 | 60 | 59 |
| DEL PEAK 39(16Q23.1) WILD-TYPE | 67 | 69 | 57 |
Figure S431. Get High-res Image Gene #69: 'del_16q23.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00038 (Fisher's exact test), Q value = 0.0018
Table S432. Gene #69: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 39(16Q23.1) MUTATED | 10 | 81 | 50 |
| DEL PEAK 39(16Q23.1) WILD-TYPE | 29 | 70 | 94 |
Figure S432. Get High-res Image Gene #69: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4e-04 (Fisher's exact test), Q value = 0.0018
Table S433. Gene #70: 'del_17p11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 40(17P11.2) MUTATED | 83 | 87 | 102 |
| DEL PEAK 40(17P11.2) WILD-TYPE | 99 | 79 | 51 |
Figure S433. Get High-res Image Gene #70: 'del_17p11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00782 (Fisher's exact test), Q value = 0.02
Table S434. Gene #70: 'del_17p11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 54 | 41 | 52 | 47 |
| DEL PEAK 40(17P11.2) MUTATED | 35 | 14 | 28 | 18 |
| DEL PEAK 40(17P11.2) WILD-TYPE | 19 | 27 | 24 | 29 |
Figure S434. Get High-res Image Gene #70: 'del_17p11.2' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
P value = 0.0158 (Fisher's exact test), Q value = 0.037
Table S435. Gene #70: 'del_17p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 40(17P11.2) MUTATED | 112 | 92 | 67 |
| DEL PEAK 40(17P11.2) WILD-TYPE | 66 | 97 | 64 |
Figure S435. Get High-res Image Gene #70: 'del_17p11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0272 (Fisher's exact test), Q value = 0.058
Table S436. Gene #70: 'del_17p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 40(17P11.2) MUTATED | 42 | 67 | 122 | 30 |
| DEL PEAK 40(17P11.2) WILD-TYPE | 47 | 51 | 77 | 39 |
Figure S436. Get High-res Image Gene #70: 'del_17p11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.00072
Table S437. Gene #71: 'del_17q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 41(17Q11.2) MUTATED | 21 | 5 | 11 | 6 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 21 | 47 | 21 | 22 |
Figure S437. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S438. Gene #71: 'del_17q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 41(17Q11.2) MUTATED | 21 | 5 | 17 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 26 | 51 | 34 |
Figure S438. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S439. Gene #71: 'del_17q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 41(17Q11.2) MUTATED | 50 | 17 | 65 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 132 | 149 | 88 |
Figure S439. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00039
Table S440. Gene #71: 'del_17q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 41(17Q11.2) MUTATED | 49 | 14 | 29 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 103 | 108 | 64 |
Figure S440. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S441. Gene #71: 'del_17q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 41(17Q11.2) MUTATED | 43 | 13 | 50 | 25 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 70 | 139 | 104 | 54 |
Figure S441. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S442. Gene #71: 'del_17q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 41(17Q11.2) MUTATED | 74 | 19 | 38 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 104 | 170 | 93 |
Figure S442. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00405 (Fisher's exact test), Q value = 0.012
Table S443. Gene #71: 'del_17q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 41(17Q11.2) MUTATED | 37 | 26 | 39 | 10 | 16 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 84 | 108 | 82 | 52 | 21 |
Figure S443. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00129 (Fisher's exact test), Q value = 0.0048
Table S444. Gene #71: 'del_17q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 41(17Q11.2) MUTATED | 12 | 27 | 64 | 25 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 77 | 91 | 135 | 44 |
Figure S444. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00034 (Fisher's exact test), Q value = 0.0016
Table S445. Gene #71: 'del_17q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 41(17Q11.2) MUTATED | 17 | 25 | 46 |
| DEL PEAK 41(17Q11.2) WILD-TYPE | 22 | 126 | 98 |
Figure S445. Get High-res Image Gene #71: 'del_17q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00479 (Fisher's exact test), Q value = 0.014
Table S446. Gene #72: 'del_17q25.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 42(17Q25.3) MUTATED | 16 | 5 | 7 | 3 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 26 | 47 | 25 | 25 |
Figure S446. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.012 (Fisher's exact test), Q value = 0.03
Table S447. Gene #72: 'del_17q25.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 42(17Q25.3) MUTATED | 15 | 5 | 11 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 32 | 51 | 40 |
Figure S447. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S448. Gene #72: 'del_17q25.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 42(17Q25.3) MUTATED | 37 | 18 | 47 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 145 | 148 | 106 |
Figure S448. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0168 (Fisher's exact test), Q value = 0.039
Table S449. Gene #72: 'del_17q25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 42(17Q25.3) MUTATED | 34 | 15 | 25 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 118 | 107 | 68 |
Figure S449. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00137 (Fisher's exact test), Q value = 0.005
Table S450. Gene #72: 'del_17q25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 42(17Q25.3) MUTATED | 35 | 18 | 35 | 14 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 78 | 134 | 119 | 65 |
Figure S450. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00143 (Fisher's exact test), Q value = 0.0051
Table S451. Gene #72: 'del_17q25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 42(17Q25.3) MUTATED | 51 | 25 | 26 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 127 | 164 | 105 |
Figure S451. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0134 (Fisher's exact test), Q value = 0.033
Table S452. Gene #72: 'del_17q25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 42(17Q25.3) MUTATED | 8 | 28 | 48 | 15 |
| DEL PEAK 42(17Q25.3) WILD-TYPE | 81 | 90 | 151 | 54 |
Figure S452. Get High-res Image Gene #72: 'del_17q25.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0054 (Fisher's exact test), Q value = 0.015
Table S453. Gene #73: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 43(18Q23) MUTATED | 68 | 84 | 82 |
| DEL PEAK 43(18Q23) WILD-TYPE | 114 | 82 | 71 |
Figure S453. Get High-res Image Gene #73: 'del_18q23' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00056
Table S454. Gene #74: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 44(19P13.3) MUTATED | 67 | 76 | 93 |
| DEL PEAK 44(19P13.3) WILD-TYPE | 115 | 90 | 60 |
Figure S454. Get High-res Image Gene #74: 'del_19p13.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0219 (Fisher's exact test), Q value = 0.049
Table S455. Gene #74: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 44(19P13.3) MUTATED | 86 | 76 | 73 |
| DEL PEAK 44(19P13.3) WILD-TYPE | 92 | 113 | 58 |
Figure S455. Get High-res Image Gene #74: 'del_19p13.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00093 (Fisher's exact test), Q value = 0.0036
Table S456. Gene #74: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 44(19P13.3) MUTATED | 30 | 57 | 112 | 25 |
| DEL PEAK 44(19P13.3) WILD-TYPE | 59 | 61 | 87 | 44 |
Figure S456. Get High-res Image Gene #74: 'del_19p13.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S457. Gene #75: 'del_19q13.32' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 45(19Q13.32) MUTATED | 32 | 73 | 44 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 150 | 93 | 109 |
Figure S457. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.00061
Table S458. Gene #75: 'del_19q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 45(19Q13.32) MUTATED | 26 | 46 | 35 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 126 | 76 | 58 |
Figure S458. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0143 (Fisher's exact test), Q value = 0.034
Table S459. Gene #75: 'del_19q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 45(19Q13.32) MUTATED | 28 | 61 | 39 | 21 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 85 | 91 | 115 | 58 |
Figure S459. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00718 (Fisher's exact test), Q value = 0.019
Table S460. Gene #75: 'del_19q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 45(19Q13.32) MUTATED | 42 | 72 | 35 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 136 | 117 | 96 |
Figure S460. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0376 (Fisher's exact test), Q value = 0.076
Table S461. Gene #75: 'del_19q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 45(19Q13.32) MUTATED | 35 | 50 | 24 | 21 | 11 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 86 | 84 | 97 | 41 | 26 |
Figure S461. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.0137 (Fisher's exact test), Q value = 0.033
Table S462. Gene #75: 'del_19q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 45(19Q13.32) MUTATED | 16 | 42 | 41 |
| DEL PEAK 45(19Q13.32) WILD-TYPE | 73 | 87 | 75 |
Figure S462. Get High-res Image Gene #75: 'del_19q13.32' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00045
Table S463. Gene #76: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 46(21Q11.2) MUTATED | 66 | 92 | 88 |
| DEL PEAK 46(21Q11.2) WILD-TYPE | 116 | 74 | 65 |
Figure S463. Get High-res Image Gene #76: 'del_21q11.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.00081 (Fisher's exact test), Q value = 0.0033
Table S464. Gene #76: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 46(21Q11.2) MUTATED | 61 | 79 | 47 | 23 | 25 |
| DEL PEAK 46(21Q11.2) WILD-TYPE | 60 | 55 | 74 | 39 | 12 |
Figure S464. Get High-res Image Gene #76: 'del_21q11.2' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00021 (Fisher's exact test), Q value = 0.0011
Table S465. Gene #76: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 46(21Q11.2) MUTATED | 42 | 66 | 109 | 18 |
| DEL PEAK 46(21Q11.2) WILD-TYPE | 47 | 52 | 90 | 51 |
Figure S465. Get High-res Image Gene #76: 'del_21q11.2' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0147 (Fisher's exact test), Q value = 0.035
Table S466. Gene #76: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 46(21Q11.2) MUTATED | 22 | 85 | 58 |
| DEL PEAK 46(21Q11.2) WILD-TYPE | 17 | 66 | 86 |
Figure S466. Get High-res Image Gene #76: 'del_21q11.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S467. Gene #77: 'del_21q22.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 47(21Q22.3) MUTATED | 71 | 110 | 100 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 111 | 56 | 53 |
Figure S467. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.0055 (Fisher's exact test), Q value = 0.016
Table S468. Gene #77: 'del_21q22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 47(21Q22.3) MUTATED | 68 | 78 | 53 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 84 | 44 | 40 |
Figure S468. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.0103 (Fisher's exact test), Q value = 0.026
Table S469. Gene #77: 'del_21q22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 47(21Q22.3) MUTATED | 78 | 79 | 53 | 34 | 25 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 43 | 55 | 68 | 28 | 12 |
Figure S469. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5e-04 (Fisher's exact test), Q value = 0.0022
Table S470. Gene #77: 'del_21q22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 47(21Q22.3) MUTATED | 55 | 70 | 121 | 23 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 34 | 48 | 78 | 46 |
Figure S470. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0144 (Fisher's exact test), Q value = 0.035
Table S471. Gene #77: 'del_21q22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 47(21Q22.3) MUTATED | 38 | 67 | 73 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 51 | 62 | 43 |
Figure S471. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.0475 (Fisher's exact test), Q value = 0.093
Table S472. Gene #77: 'del_21q22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 47(21Q22.3) MUTATED | 21 | 91 | 66 |
| DEL PEAK 47(21Q22.3) WILD-TYPE | 18 | 60 | 78 |
Figure S472. Get High-res Image Gene #77: 'del_21q22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0299 (Fisher's exact test), Q value = 0.063
Table S473. Gene #78: 'del_22q11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 48(22Q11.21) MUTATED | 4 | 11 | 8 | 11 |
| DEL PEAK 48(22Q11.21) WILD-TYPE | 38 | 41 | 24 | 17 |
Figure S473. Get High-res Image Gene #78: 'del_22q11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S474. Gene #78: 'del_22q11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 48(22Q11.21) MUTATED | 23 | 31 | 41 |
| DEL PEAK 48(22Q11.21) WILD-TYPE | 155 | 158 | 90 |
Figure S474. Get High-res Image Gene #78: 'del_22q11.21' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00024 (Fisher's exact test), Q value = 0.0012
Table S475. Gene #79: 'del_22q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 49(22Q13.32) MUTATED | 8 | 8 | 8 | 17 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 34 | 44 | 24 | 11 |
Figure S475. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.0134 (Fisher's exact test), Q value = 0.033
Table S476. Gene #79: 'del_22q13.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 49(22Q13.32) MUTATED | 11 | 9 | 21 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 36 | 47 | 30 |
Figure S476. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 0.027 (Fisher's exact test), Q value = 0.058
Table S477. Gene #79: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 49(22Q13.32) MUTATED | 47 | 21 | 26 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 105 | 101 | 67 |
Figure S477. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 5e-04
Table S478. Gene #79: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 49(22Q13.32) MUTATED | 29 | 23 | 59 | 17 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 84 | 129 | 95 | 62 |
Figure S478. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S479. Gene #79: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 49(22Q13.32) MUTATED | 39 | 30 | 59 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 139 | 159 | 72 |
Figure S479. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00047 (Fisher's exact test), Q value = 0.0021
Table S480. Gene #79: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 49(22Q13.32) MUTATED | 11 | 38 | 59 | 10 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 78 | 80 | 140 | 59 |
Figure S480. Get High-res Image Gene #79: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S481. Gene #80: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 50(XP22.2) MUTATED | 35 | 69 | 51 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 147 | 97 | 102 |
Figure S481. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S482. Gene #80: 'del_xp22.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 50(XP22.2) MUTATED | 26 | 49 | 38 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 126 | 73 | 55 |
Figure S482. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.012 (Fisher's exact test), Q value = 0.03
Table S483. Gene #80: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 50(XP22.2) MUTATED | 34 | 60 | 44 | 15 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 79 | 92 | 110 | 64 |
Figure S483. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00943 (Fisher's exact test), Q value = 0.024
Table S484. Gene #80: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 50(XP22.2) MUTATED | 49 | 73 | 31 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 129 | 116 | 100 |
Figure S484. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00024 (Fisher's exact test), Q value = 0.0012
Table S485. Gene #80: 'del_xp22.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 50(XP22.2) MUTATED | 15 | 39 | 50 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 74 | 90 | 66 |
Figure S485. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S486. Gene #80: 'del_xp22.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 50(XP22.2) MUTATED | 8 | 66 | 30 |
| DEL PEAK 50(XP22.2) WILD-TYPE | 31 | 85 | 114 |
Figure S486. Get High-res Image Gene #80: 'del_xp22.2' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S487. Gene #81: 'del_xp21.1' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 51(XP21.1) MUTATED | 30 | 73 | 49 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 152 | 93 | 104 |
Figure S487. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S488. Gene #81: 'del_xp21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 51(XP21.1) MUTATED | 21 | 51 | 38 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 131 | 71 | 55 |
Figure S488. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00045
Table S489. Gene #81: 'del_xp21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 51(XP21.1) MUTATED | 35 | 66 | 34 | 15 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 78 | 86 | 120 | 64 |
Figure S489. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00101 (Fisher's exact test), Q value = 0.0039
Table S490. Gene #81: 'del_xp21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 51(XP21.1) MUTATED | 47 | 75 | 28 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 131 | 114 | 103 |
Figure S490. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00605 (Fisher's exact test), Q value = 0.017
Table S491. Gene #81: 'del_xp21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 51(XP21.1) MUTATED | 40 | 48 | 22 | 25 | 12 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 81 | 86 | 99 | 37 | 25 |
Figure S491. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00142 (Fisher's exact test), Q value = 0.0051
Table S492. Gene #81: 'del_xp21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 51(XP21.1) MUTATED | 38 | 40 | 59 | 10 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 51 | 78 | 140 | 59 |
Figure S492. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S493. Gene #81: 'del_xp21.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 51(XP21.1) MUTATED | 10 | 43 | 47 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 79 | 86 | 69 |
Figure S493. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S494. Gene #81: 'del_xp21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 51(XP21.1) MUTATED | 6 | 67 | 27 |
| DEL PEAK 51(XP21.1) WILD-TYPE | 33 | 84 | 117 |
Figure S494. Get High-res Image Gene #81: 'del_xp21.1' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S495. Gene #82: 'del_xp11.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 52(XP11.3) MUTATED | 30 | 73 | 46 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 152 | 93 | 107 |
Figure S495. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S496. Gene #82: 'del_xp11.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 52(XP11.3) MUTATED | 20 | 53 | 35 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 132 | 69 | 58 |
Figure S496. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00072
Table S497. Gene #82: 'del_xp11.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 52(XP11.3) MUTATED | 31 | 65 | 39 | 13 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 82 | 87 | 115 | 66 |
Figure S497. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00195 (Fisher's exact test), Q value = 0.0067
Table S498. Gene #82: 'del_xp11.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 189 | 131 |
| DEL PEAK 52(XP11.3) MUTATED | 47 | 73 | 28 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 131 | 116 | 103 |
Figure S498. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00093
Table S499. Gene #82: 'del_xp11.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 52(XP11.3) MUTATED | 36 | 50 | 18 | 26 | 13 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 85 | 84 | 103 | 36 | 24 |
Figure S499. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00047 (Fisher's exact test), Q value = 0.0021
Table S500. Gene #82: 'del_xp11.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 52(XP11.3) MUTATED | 38 | 38 | 58 | 9 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 51 | 80 | 141 | 60 |
Figure S500. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S501. Gene #82: 'del_xp11.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 52(XP11.3) MUTATED | 10 | 40 | 47 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 79 | 89 | 69 |
Figure S501. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S502. Gene #82: 'del_xp11.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 52(XP11.3) MUTATED | 7 | 64 | 26 |
| DEL PEAK 52(XP11.3) WILD-TYPE | 32 | 87 | 118 |
Figure S502. Get High-res Image Gene #82: 'del_xp11.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0213 (Fisher's exact test), Q value = 0.048
Table S503. Gene #83: 'del_xq22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 42 | 52 | 32 | 28 |
| DEL PEAK 53(XQ22.3) MUTATED | 15 | 7 | 5 | 10 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 27 | 45 | 27 | 18 |
Figure S503. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.01 (Fisher's exact test), Q value = 0.026
Table S504. Gene #83: 'del_xq22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 47 | 56 | 51 |
| DEL PEAK 53(XQ22.3) MUTATED | 18 | 7 | 12 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 29 | 49 | 39 |
Figure S504. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S505. Gene #83: 'del_xq22.3' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 182 | 166 | 153 |
| DEL PEAK 53(XQ22.3) MUTATED | 19 | 37 | 58 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 163 | 129 | 95 |
Figure S505. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 8.5e-05
Table S506. Gene #83: 'del_xq22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 152 | 122 | 93 |
| DEL PEAK 53(XQ22.3) MUTATED | 14 | 30 | 35 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 138 | 92 | 58 |
Figure S506. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.00117 (Fisher's exact test), Q value = 0.0044
Table S507. Gene #83: 'del_xq22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 113 | 152 | 154 | 79 |
| DEL PEAK 53(XQ22.3) MUTATED | 36 | 31 | 39 | 7 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 77 | 121 | 115 | 72 |
Figure S507. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.00573 (Fisher's exact test), Q value = 0.016
Table S508. Gene #83: 'del_xq22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 121 | 134 | 121 | 62 | 37 |
| DEL PEAK 53(XQ22.3) MUTATED | 32 | 39 | 15 | 12 | 12 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 89 | 95 | 106 | 50 | 25 |
Figure S508. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.00014 (Fisher's exact test), Q value = 0.00082
Table S509. Gene #83: 'del_xq22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 89 | 118 | 199 | 69 |
| DEL PEAK 53(XQ22.3) MUTATED | 20 | 33 | 54 | 3 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 69 | 85 | 145 | 66 |
Figure S509. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00854 (Fisher's exact test), Q value = 0.022
Table S510. Gene #83: 'del_xq22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 89 | 129 | 116 |
| DEL PEAK 53(XQ22.3) MUTATED | 11 | 27 | 35 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 78 | 102 | 81 |
Figure S510. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.00031 (Fisher's exact test), Q value = 0.0015
Table S511. Gene #83: 'del_xq22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 39 | 151 | 144 |
| DEL PEAK 53(XQ22.3) MUTATED | 10 | 46 | 17 |
| DEL PEAK 53(XQ22.3) WILD-TYPE | 29 | 105 | 127 |
Figure S511. Get High-res Image Gene #83: 'del_xq22.3' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/15093660/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUSC-TP/15114194/LUSC-TP.transferedmergedcluster.txt
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Number of patients = 501
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Number of significantly focal cnvs = 83
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.