[1] "ofn"        "-oTMESO-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/15104504/MESO-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/15089884/transformed.cor.cli.txt"

nPatients in clinical file=87, in cluster file=87, common to both=87
[1] 21 87
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
[1] "DEL PEAK  2(1P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
[1] "DEL PEAK  4(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
[1] "DEL PEAK  5(4Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  7(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
[1] "DEL PEAK  8(6Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
[1] "DEL PEAK 10(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
[1] "DEL PEAK 11(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
[1] "DEL PEAK 12(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 13(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
[1] "DEL PEAK 14(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
[1] "DEL PEAK 15(12P13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
[1] "DEL PEAK 16(13Q14.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             43                              44 
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             43                              44 
[1] "DEL PEAK 17(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
[1] "DEL PEAK 18(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 19(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
[1] "DEL PEAK 20(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
[1] "DEL PEAK 21(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 87 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 87 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2     19      5      7
  DEL PEAK  1(1P36.31) WILD-TYPE     21      7     19      7
D1V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                           19                              7
  CLUS_3                            5                             19
  CLUS_4                            7                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        4      8     14      7
  DEL PEAK  1(1P36.31) WILD-TYPE     10     12     12     20
D1V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            8                             12
  CLUS_3                           14                             12
  CLUS_4                            7                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7     11      8      7
  DEL PEAK  1(1P36.31) WILD-TYPE     19     11      9     14
D1V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           11                             11
  CLUS_3                            8                              9
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        3      8     11      5      6
  DEL PEAK  1(1P36.31) WILD-TYPE     19      4     11      8     11
D1V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            8                              4
  CLUS_3                           11                             11
  CLUS_4                            5                              8
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        9     12     12
  DEL PEAK  1(1P36.31) WILD-TYPE     27     17     10
D1V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                           12                             17
  CLUS_3                           12                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        9     12      5      6      1
  DEL PEAK  1(1P36.31) WILD-TYPE     20     13      1      7     13
D1V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                           12                             13
  CLUS_3                            5                              1
  CLUS_4                            6                              7
  CLUS_5                            1                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      8     10
  DEL PEAK  1(1P36.31) WILD-TYPE     22     19     11
D1V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                            8                             19
  CLUS_3                           10                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2      9     10     12
  DEL PEAK  1(1P36.31) WILD-TYPE     14      8     11     19
D1V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            9                              8
  CLUS_3                           10                             11
  CLUS_4                           12                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = DEL PEAK  2(1P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     14     12      6
  DEL PEAK  2(1P21.3) WILD-TYPE     18     12     12      8
D2V1, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          14                            12
  CLUS_3                          12                            12
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     10     16      6
  DEL PEAK  2(1P21.3) WILD-TYPE      9     10     10     21
D2V2, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                          10                            10
  CLUS_3                          16                            10
  CLUS_4                           6                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     11      5     16
  DEL PEAK  2(1P21.3) WILD-TYPE     21     11     12      5
D2V3, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          11                            11
  CLUS_3                           5                            12
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED        5      7     10      3     12
  DEL PEAK  2(1P21.3) WILD-TYPE     17      5     12     10      5
D2V4, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           7                             5
  CLUS_3                          10                            12
  CLUS_4                           3                            10
  CLUS_5                          12                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.3) MUTATED       15     12     10
  DEL PEAK  2(1P21.3) WILD-TYPE     21     17     12
D2V5, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          15                            21
  CLUS_2                          12                            17
  CLUS_3                          10                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED       11      9      3      9      5
  DEL PEAK  2(1P21.3) WILD-TYPE     18     16      3      4      9
D2V6, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                           9                            16
  CLUS_3                           3                             3
  CLUS_4                           9                             4
  CLUS_5                           5                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.3) MUTATED       15     14      8
  DEL PEAK  2(1P21.3) WILD-TYPE     22     13     13
D2V7, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          15                            22
  CLUS_2                          14                            13
  CLUS_3                           8                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5      8      8     16
  DEL PEAK  2(1P21.3) WILD-TYPE     11      9     13     15
D2V8, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           8                             9
  CLUS_3                           8                            13
  CLUS_4                          16                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        1      8      6      2
  DEL PEAK  3(2Q35) WILD-TYPE     22     18     18     12
D3V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          22
  CLUS_2                         8                          18
  CLUS_3                         6                          18
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        2      8      5      2
  DEL PEAK  3(2Q35) WILD-TYPE     12     12     21     25
D3V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         8                          12
  CLUS_3                         5                          21
  CLUS_4                         2                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        3      6      4      4
  DEL PEAK  3(2Q35) WILD-TYPE     23     16     13     17
D3V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          23
  CLUS_2                         6                          16
  CLUS_3                         4                          13
  CLUS_4                         4                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        1      6      7      1      2
  DEL PEAK  3(2Q35) WILD-TYPE     21      6     15     12     15
D3V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          21
  CLUS_2                         6                           6
  CLUS_3                         7                          15
  CLUS_4                         1                          12
  CLUS_5                         2                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        7      4      6
  DEL PEAK  3(2Q35) WILD-TYPE     29     25     16
D3V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         7                          29
  CLUS_2                         4                          25
  CLUS_3                         6                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        5      6      3      3      0
  DEL PEAK  3(2Q35) WILD-TYPE     24     19      3     10     14
D3V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         5                          24
  CLUS_2                         6                          19
  CLUS_3                         3                           3
  CLUS_4                         3                          10
  CLUS_5                         0                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        7      4      5
  DEL PEAK  3(2Q35) WILD-TYPE     30     23     16
D3V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         7                          30
  CLUS_2                         4                          23
  CLUS_3                         5                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        1      4      6      5
  DEL PEAK  3(2Q35) WILD-TYPE     15     13     15     26
D3V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          15
  CLUS_2                         4                          13
  CLUS_3                         6                          15
  CLUS_4                         5                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  4(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       13     16     18      1
  DEL PEAK  4(3P21.1) WILD-TYPE     10     10      6     13
D4V1, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          16                            10
  CLUS_3                          18                             6
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       10     13     15     10
  DEL PEAK  4(3P21.1) WILD-TYPE      4      7     11     17
D4V2, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                          13                             7
  CLUS_3                          15                            11
  CLUS_4                          10                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       21      4     10     13
  DEL PEAK  4(3P21.1) WILD-TYPE      5     18      7      8
D4V3, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          21                             5
  CLUS_2                           4                            18
  CLUS_3                          10                             7
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED       16     12      4      7      9
  DEL PEAK  4(3P21.1) WILD-TYPE      6      0     18      6      8
D4V4, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          16                             6
  CLUS_2                          12                             0
  CLUS_3                           4                            18
  CLUS_4                           7                             6
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       24     14     10
  DEL PEAK  4(3P21.1) WILD-TYPE     12     15     12
D4V5, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          24                            12
  CLUS_2                          14                            15
  CLUS_3                          10                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED       16      8      3      9     12
  DEL PEAK  4(3P21.1) WILD-TYPE     13     17      3      4      2
D4V6, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                           8                            17
  CLUS_3                           3                             3
  CLUS_4                           9                             4
  CLUS_5                          12                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       20     18      9
  DEL PEAK  4(3P21.1) WILD-TYPE     17      9     12
D4V7, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                          18                             9
  CLUS_3                           9                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       13      4     11     19
  DEL PEAK  4(3P21.1) WILD-TYPE      3     13     10     12
D4V8, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          13                             3
  CLUS_2                           4                            13
  CLUS_3                          11                            10
  CLUS_4                          19                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  5(4Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        3     21      6      8
  DEL PEAK  5(4Q26) WILD-TYPE     20      5     18      6
D5V1, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                        21                           5
  CLUS_3                         6                          18
  CLUS_4                         8                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        4     14     10     10
  DEL PEAK  5(4Q26) WILD-TYPE     10      6     16     17
D5V2, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                        14                           6
  CLUS_3                        10                          16
  CLUS_4                        10                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        4     11      9     14
  DEL PEAK  5(4Q26) WILD-TYPE     22     11      8      7
D5V3, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         4                          22
  CLUS_2                        11                          11
  CLUS_3                         9                           8
  CLUS_4                        14                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED        2      8     12      5     11
  DEL PEAK  5(4Q26) WILD-TYPE     20      4     10      8      6
D5V4, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         2                          20
  CLUS_2                         8                           4
  CLUS_3                        12                          10
  CLUS_4                         5                           8
  CLUS_5                        11                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED       14     11     13
  DEL PEAK  5(4Q26) WILD-TYPE     22     18      9
D5V5, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        14                          22
  CLUS_2                        11                          18
  CLUS_3                        13                           9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED       14     12      5      5      2
  DEL PEAK  5(4Q26) WILD-TYPE     15     13      1      8     12
D5V6, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                        12                          13
  CLUS_3                         5                           1
  CLUS_4                         5                           8
  CLUS_5                         2                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED       14     11     11
  DEL PEAK  5(4Q26) WILD-TYPE     23     16     10
D5V7, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        14                          23
  CLUS_2                        11                          16
  CLUS_3                        11                          10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        3      9      9     15
  DEL PEAK  5(4Q26) WILD-TYPE     13      8     12     16
D5V8, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                         9                           8
  CLUS_3                         9                          12
  CLUS_4                        15                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        3     22      7      9
  DEL PEAK  6(4Q34.3) WILD-TYPE     20      4     17      5
D6V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          22                             4
  CLUS_3                           7                            17
  CLUS_4                           9                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        4     15     13      9
  DEL PEAK  6(4Q34.3) WILD-TYPE     10      5     13     18
D6V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                          15                             5
  CLUS_3                          13                            13
  CLUS_4                           9                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7     13      8     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     19      9      9      8
D6V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                          13                             9
  CLUS_3                           8                             9
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        2      9     14      5     11
  DEL PEAK  6(4Q34.3) WILD-TYPE     20      3      8      8      6
D6V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            20
  CLUS_2                           9                             3
  CLUS_3                          14                             8
  CLUS_4                           5                             8
  CLUS_5                          11                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       14     13     14
  DEL PEAK  6(4Q34.3) WILD-TYPE     22     16      8
D6V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                            22
  CLUS_2                          13                            16
  CLUS_3                          14                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED       14     14      4      6      3
  DEL PEAK  6(4Q34.3) WILD-TYPE     15     11      2      7     11
D6V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          14                            11
  CLUS_3                           4                             2
  CLUS_4                           6                             7
  CLUS_5                           3                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       18     12     10
  DEL PEAK  6(4Q34.3) WILD-TYPE     19     15     11
D6V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                            19
  CLUS_2                          12                            15
  CLUS_3                          10                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        4     11      9     16
  DEL PEAK  6(4Q34.3) WILD-TYPE     12      6     12     15
D6V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                          11                             6
  CLUS_3                           9                            12
  CLUS_4                          16                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  7(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        0     10      7      0
  DEL PEAK  7(5Q23.2) WILD-TYPE     23     16     17     14
D7V1, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           0                            23
  CLUS_2                          10                            16
  CLUS_3                           7                            17
  CLUS_4                           0                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        2      6      6      3
  DEL PEAK  7(5Q23.2) WILD-TYPE     12     14     20     24
D7V2, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                            14
  CLUS_3                           6                            20
  CLUS_4                           3                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        4      4      3      6
  DEL PEAK  7(5Q23.2) WILD-TYPE     22     18     14     15
D7V3, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           4                            18
  CLUS_3                           3                            14
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        3      6      3      2      3
  DEL PEAK  7(5Q23.2) WILD-TYPE     19      6     19     11     14
D7V4, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                           6                             6
  CLUS_3                           3                            19
  CLUS_4                           2                            11
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q23.2) MUTATED        8      6      3
  DEL PEAK  7(5Q23.2) WILD-TYPE     28     23     19
D7V5, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           8                            28
  CLUS_2                           6                            23
  CLUS_3                           3                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        7      5      0      4      1
  DEL PEAK  7(5Q23.2) WILD-TYPE     22     20      6      9     13
D7V6, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           5                            20
  CLUS_3                           0                             6
  CLUS_4                           4                             9
  CLUS_5                           1                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q23.2) MUTATED        7      5      4
  DEL PEAK  7(5Q23.2) WILD-TYPE     30     22     17
D7V7, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                           5                            22
  CLUS_3                           4                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        3      3      4      6
  DEL PEAK  7(5Q23.2) WILD-TYPE     13     14     17     25
D7V8, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           3                            14
  CLUS_3                           4                            17
  CLUS_4                           6                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  8(6Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       12     19      8      2
  DEL PEAK  8(6Q22.1) WILD-TYPE     11      7     16     12
D8V1, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          19                             7
  CLUS_3                           8                            16
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED        9      9     14      9
  DEL PEAK  8(6Q22.1) WILD-TYPE      5     11     12     18
D8V2, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           9                            11
  CLUS_3                          14                            12
  CLUS_4                           9                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       16     10      9      6
  DEL PEAK  8(6Q22.1) WILD-TYPE     10     12      8     15
D8V3, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          10                            12
  CLUS_3                           9                             8
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED       14      5     10      6      6
  DEL PEAK  8(6Q22.1) WILD-TYPE      8      7     12      7     11
D8V4, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                             8
  CLUS_2                           5                             7
  CLUS_3                          10                            12
  CLUS_4                           6                             7
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.1) MUTATED       15     16     10
  DEL PEAK  8(6Q22.1) WILD-TYPE     21     13     12
D8V5, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          15                            21
  CLUS_2                          16                            13
  CLUS_3                          10                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED       16     10      3      3      9
  DEL PEAK  8(6Q22.1) WILD-TYPE     13     15      3     10      5
D8V6, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                          10                            15
  CLUS_3                           3                             3
  CLUS_4                           3                            10
  CLUS_5                           9                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.1) MUTATED       21     10      9
  DEL PEAK  8(6Q22.1) WILD-TYPE     16     17     12
D8V7, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          21                            16
  CLUS_2                          10                            17
  CLUS_3                           9                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       13      8      9     10
  DEL PEAK  8(6Q22.1) WILD-TYPE      3      9     12     21
D8V8, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          13                             3
  CLUS_2                           8                             9
  CLUS_3                           9                            12
  CLUS_4                          10                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       11     19      4      2
  DEL PEAK  9(6Q26) WILD-TYPE     12      7     20     12
D9V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        11                          12
  CLUS_2                        19                           7
  CLUS_3                         4                          20
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        8      7     13      8
  DEL PEAK  9(6Q26) WILD-TYPE      6     13     13     19
D9V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                         7                          13
  CLUS_3                        13                          13
  CLUS_4                         8                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       12     10      7      7
  DEL PEAK  9(6Q26) WILD-TYPE     14     12     10     14
D9V3, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        12                          14
  CLUS_2                        10                          12
  CLUS_3                         7                          10
  CLUS_4                         7                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED       10      4     11      4      7
  DEL PEAK  9(6Q26) WILD-TYPE     12      8     11      9     10
D9V4, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        10                          12
  CLUS_2                         4                           8
  CLUS_3                        11                          11
  CLUS_4                         4                           9
  CLUS_5                         7                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED       14     15      7
  DEL PEAK  9(6Q26) WILD-TYPE     22     14     15
D9V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        14                          22
  CLUS_2                        15                          14
  CLUS_3                         7                          15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED       12     10      3      3      8
  DEL PEAK  9(6Q26) WILD-TYPE     17     15      3     10      6
D9V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        12                          17
  CLUS_2                        10                          15
  CLUS_3                         3                           3
  CLUS_4                         3                          10
  CLUS_5                         8                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED       19      9      8
  DEL PEAK  9(6Q26) WILD-TYPE     18     18     13
D9V7, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        19                          18
  CLUS_2                         9                          18
  CLUS_3                         8                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       11      9      6     10
  DEL PEAK  9(6Q26) WILD-TYPE      5      8     15     21
D9V8, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        11                           5
  CLUS_2                         9                           8
  CLUS_3                         6                          15
  CLUS_4                        10                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK 10(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        4      5      5      4
  DEL PEAK 10(8P23.2) WILD-TYPE     19     21     19     10
D10V1, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           5                            21
  CLUS_3                           5                            19
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        4      4      6      4
  DEL PEAK 10(8P23.2) WILD-TYPE     10     16     20     23
D10V2, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           4                            16
  CLUS_3                           6                            20
  CLUS_4                           4                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        7      5      2      4
  DEL PEAK 10(8P23.2) WILD-TYPE     19     17     15     17
D10V3, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                           5                            17
  CLUS_3                           2                            15
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        6      2      5      2      3
  DEL PEAK 10(8P23.2) WILD-TYPE     16     10     17     11     14
D10V4, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                           2                            10
  CLUS_3                           5                            17
  CLUS_4                           2                            11
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P23.2) MUTATED        6      6      6
  DEL PEAK 10(8P23.2) WILD-TYPE     30     23     16
D10V5, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           6                            30
  CLUS_2                           6                            23
  CLUS_3                           6                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        8      4      1      3      2
  DEL PEAK 10(8P23.2) WILD-TYPE     21     21      5     10     12
D10V6, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           4                            21
  CLUS_3                           1                             5
  CLUS_4                           3                            10
  CLUS_5                           2                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P23.2) MUTATED        9      5      4
  DEL PEAK 10(8P23.2) WILD-TYPE     28     22     17
D10V7, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                           5                            22
  CLUS_3                           4                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        5      4      4      5
  DEL PEAK 10(8P23.2) WILD-TYPE     11     13     17     26
D10V8, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           4                            13
  CLUS_3                           4                            17
  CLUS_4                           5                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK 11(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        2     24     20      5
  DEL PEAK 11(9P21.3) WILD-TYPE     21      2      4      9
D11V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                          24                             2
  CLUS_3                          20                             4
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        6     17     17     11
  DEL PEAK 11(9P21.3) WILD-TYPE      8      3      9     16
D11V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                          17                             3
  CLUS_3                          17                             9
  CLUS_4                          11                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        9     14     12     16
  DEL PEAK 11(9P21.3) WILD-TYPE     17      8      5      5
D11V3, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          14                             8
  CLUS_3                          12                             5
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED        4     12     14      9     12
  DEL PEAK 11(9P21.3) WILD-TYPE     18      0      8      4      5
D11V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                          12                             0
  CLUS_3                          14                             8
  CLUS_4                           9                             4
  CLUS_5                          12                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       22     16     13
  DEL PEAK 11(9P21.3) WILD-TYPE     14     13      9
D11V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          22                            14
  CLUS_2                          16                            13
  CLUS_3                          13                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED       19     15      5      8      4
  DEL PEAK 11(9P21.3) WILD-TYPE     10     10      1      5     10
D11V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          19                            10
  CLUS_2                          15                            10
  CLUS_3                           5                             1
  CLUS_4                           8                             5
  CLUS_5                           4                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       19     18     13
  DEL PEAK 11(9P21.3) WILD-TYPE     18      9      8
D11V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          19                            18
  CLUS_2                          18                             9
  CLUS_3                          13                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        4     12     12     22
  DEL PEAK 11(9P21.3) WILD-TYPE     12      5      9      9
D11V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                          12                             5
  CLUS_3                          12                             9
  CLUS_4                          22                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK 12(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        2     14     10      2
  DEL PEAK 12(10P15.3) WILD-TYPE     21     12     14     12
D12V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                           14                             12
  CLUS_3                           10                             14
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        1     12      9      6
  DEL PEAK 12(10P15.3) WILD-TYPE     13      8     17     21
D12V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                           12                              8
  CLUS_3                            9                             17
  CLUS_4                            6                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        3      8      7     10
  DEL PEAK 12(10P15.3) WILD-TYPE     23     14     10     11
D12V3, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                            8                             14
  CLUS_3                            7                             10
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED        1      6      8      5      8
  DEL PEAK 12(10P15.3) WILD-TYPE     21      6     14      8      9
D12V4, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            6                              6
  CLUS_3                            8                             14
  CLUS_4                            5                              8
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10P15.3) MUTATED       12      9      7
  DEL PEAK 12(10P15.3) WILD-TYPE     24     20     15
D12V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            9                             20
  CLUS_3                            7                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED       12      9      1      4      2
  DEL PEAK 12(10P15.3) WILD-TYPE     17     16      5      9     12
D12V6, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            9                             16
  CLUS_3                            1                              5
  CLUS_4                            4                              9
  CLUS_5                            2                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10P15.3) MUTATED        9     11      6
  DEL PEAK 12(10P15.3) WILD-TYPE     28     16     15
D12V7, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                           11                             16
  CLUS_3                            6                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        3      7      5     11
  DEL PEAK 12(10P15.3) WILD-TYPE     13     10     16     20
D12V8, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            7                             10
  CLUS_3                            5                             16
  CLUS_4                           11                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 13(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        3     10     15      3
  DEL PEAK 13(10Q25.2) WILD-TYPE     20     16      9     11
D13V1, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           10                             16
  CLUS_3                           15                              9
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        2     11     13      5
  DEL PEAK 13(10Q25.2) WILD-TYPE     12      9     13     22
D13V2, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                           11                              9
  CLUS_3                           13                             13
  CLUS_4                            5                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        7     10      5      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     19     12     12     12
D13V3, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           10                             12
  CLUS_3                            5                             12
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED        6      3      9      4      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     16      9     13      9      8
D13V4, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            3                              9
  CLUS_3                            9                             13
  CLUS_4                            4                              9
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q25.2) MUTATED       11     11      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     25     18     13
D13V5, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                           11                             18
  CLUS_3                            9                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED       10     12      0      3      6
  DEL PEAK 13(10Q25.2) WILD-TYPE     19     13      6     10      8
D13V6, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           12                             13
  CLUS_3                            0                              6
  CLUS_4                            3                             10
  CLUS_5                            6                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q25.2) MUTATED       15     10      4
  DEL PEAK 13(10Q25.2) WILD-TYPE     22     17     17
D13V7, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           10                             17
  CLUS_3                            4                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        7      9      6      7
  DEL PEAK 13(10Q25.2) WILD-TYPE      9      8     15     24
D13V8, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            9                              8
  CLUS_3                            6                             15
  CLUS_4                            7                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 14(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        0      3     10      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     23     23     14      9
D14V1, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            0                             23
  CLUS_2                            3                             23
  CLUS_3                           10                             14
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        2      6      5      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     12     14     21     22
D14V2, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             14
  CLUS_3                            5                             21
  CLUS_4                            5                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        2      7      5      4
  DEL PEAK 14(11Q23.2) WILD-TYPE     24     15     12     17
D14V3, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                            7                             15
  CLUS_3                            5                             12
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        2      3      6      5      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     20      9     16      8     15
D14V4, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            3                              9
  CLUS_3                            6                             16
  CLUS_4                            5                              8
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.2) MUTATED        8      4      6
  DEL PEAK 14(11Q23.2) WILD-TYPE     28     25     16
D14V5, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            8                             28
  CLUS_2                            4                             25
  CLUS_3                            6                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        7      5      1      5      0
  DEL PEAK 14(11Q23.2) WILD-TYPE     22     20      5      8     14
D14V6, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                            5                             20
  CLUS_3                            1                              5
  CLUS_4                            5                              8
  CLUS_5                            0                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.2) MUTATED        8      4      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     29     23     16
D14V7, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                            4                             23
  CLUS_3                            5                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        0      5      5      7
  DEL PEAK 14(11Q23.2) WILD-TYPE     16     12     16     24
D14V8, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            5                             12
  CLUS_3                            5                             16
  CLUS_4                            7                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 15(12P13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      5      4      2
  DEL PEAK 15(12P13.31) WILD-TYPE     23     21     20     12
D15V1, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              23
  CLUS_2                             5                              21
  CLUS_3                             4                              20
  CLUS_4                             2                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        1      7      2      1
  DEL PEAK 15(12P13.31) WILD-TYPE     13     13     24     26
D15V2, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                              13
  CLUS_3                             2                              24
  CLUS_4                             1                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      5      4      2
  DEL PEAK 15(12P13.31) WILD-TYPE     26     17     13     19
D15V3, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              26
  CLUS_2                             5                              17
  CLUS_3                             4                              13
  CLUS_4                             2                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        0      2      4      3      2
  DEL PEAK 15(12P13.31) WILD-TYPE     22     10     18     10     15
D15V4, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              22
  CLUS_2                             2                              10
  CLUS_3                             4                              18
  CLUS_4                             3                              10
  CLUS_5                             2                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12P13.31) MUTATED        4      2      5
  DEL PEAK 15(12P13.31) WILD-TYPE     32     27     17
D15V5, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             4                              32
  CLUS_2                             2                              27
  CLUS_3                             5                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        5      6      0      0      0
  DEL PEAK 15(12P13.31) WILD-TYPE     24     19      6     13     14
D15V6, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             5                              24
  CLUS_2                             6                              19
  CLUS_3                             0                               6
  CLUS_4                             0                              13
  CLUS_5                             0                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12P13.31) MUTATED        5      3      2
  DEL PEAK 15(12P13.31) WILD-TYPE     32     24     19
D15V7, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             5                              32
  CLUS_2                             3                              24
  CLUS_3                             2                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      4      2      4
  DEL PEAK 15(12P13.31) WILD-TYPE     16     13     19     27
D15V8, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             4                              13
  CLUS_3                             2                              19
  CLUS_4                             4                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 16(13Q14.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        8     19     11      5
  DEL PEAK 16(13Q14.11) WILD-TYPE     15      7     13      9
D16V1, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                            19                               7
  CLUS_3                            11                              13
  CLUS_4                             5                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        7     14     10     12
  DEL PEAK 16(13Q14.11) WILD-TYPE      7      6     16     15
D16V2, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             7                               7
  CLUS_2                            14                               6
  CLUS_3                            10                              16
  CLUS_4                            12                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       13      8     12     10
  DEL PEAK 16(13Q14.11) WILD-TYPE     13     14      5     11
D16V3, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            13                              13
  CLUS_2                             8                              14
  CLUS_3                            12                               5
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED       10      9     10      8      6
  DEL PEAK 16(13Q14.11) WILD-TYPE     12      3     12      5     11
D16V4, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            10                              12
  CLUS_2                             9                               3
  CLUS_3                            10                              12
  CLUS_4                             8                               5
  CLUS_5                             6                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q14.11) MUTATED       17     15     11
  DEL PEAK 16(13Q14.11) WILD-TYPE     19     14     11
D16V5, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            17                              19
  CLUS_2                            15                              14
  CLUS_3                            11                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED       14     12      5      5      7
  DEL PEAK 16(13Q14.11) WILD-TYPE     15     13      1      8      7
D16V6, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                            12                              13
  CLUS_3                             5                               1
  CLUS_4                             5                               8
  CLUS_5                             7                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q14.11) MUTATED       20      9     12
  DEL PEAK 16(13Q14.11) WILD-TYPE     17     18      9
D16V7, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            20                              17
  CLUS_2                             9                              18
  CLUS_3                            12                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        9      8     10     14
  DEL PEAK 16(13Q14.11) WILD-TYPE      7      9     11     17
D16V8, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             9                               7
  CLUS_2                             8                               9
  CLUS_3                            10                              11
  CLUS_4                            14                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 17(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        4     18      7     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     19      8     17      4
D17V1, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             4                              19
  CLUS_2                            18                               8
  CLUS_3                             7                              17
  CLUS_4                            10                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        5     11     14      9
  DEL PEAK 17(14Q32.31) WILD-TYPE      9      9     12     18
D17V2, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                            11                               9
  CLUS_3                            14                              12
  CLUS_4                             9                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        7     17      5     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     19      5     12     11
D17V3, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             7                              19
  CLUS_2                            17                               5
  CLUS_3                             5                              12
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        4      9     18      1      7
  DEL PEAK 17(14Q32.31) WILD-TYPE     18      3      4     12     10
D17V4, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             4                              18
  CLUS_2                             9                               3
  CLUS_3                            18                               4
  CLUS_4                             1                              12
  CLUS_5                             7                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q32.31) MUTATED       10     16     13
  DEL PEAK 17(14Q32.31) WILD-TYPE     26     13      9
D17V5, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            10                              26
  CLUS_2                            16                              13
  CLUS_3                            13                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        8     15      4      9      3
  DEL PEAK 17(14Q32.31) WILD-TYPE     21     10      2      4     11
D17V6, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             8                              21
  CLUS_2                            15                              10
  CLUS_3                             4                               2
  CLUS_4                             9                               4
  CLUS_5                             3                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q32.31) MUTATED       21      7     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     16     20     11
D17V7, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            21                              16
  CLUS_2                             7                              20
  CLUS_3                            10                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        5     12     10     11
  DEL PEAK 17(14Q32.31) WILD-TYPE     11      5     11     20
D17V8, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             5                              11
  CLUS_2                            12                               5
  CLUS_3                            10                              11
  CLUS_4                            11                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 18(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        0      9     15      4
  DEL PEAK 18(15Q15.1) WILD-TYPE     23     17      9     10
D18V1, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            0                             23
  CLUS_2                            9                             17
  CLUS_3                           15                              9
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        1     12     11      4
  DEL PEAK 18(15Q15.1) WILD-TYPE     13      8     15     23
D18V2, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                           12                              8
  CLUS_3                           11                             15
  CLUS_4                            4                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3     11      6      8
  DEL PEAK 18(15Q15.1) WILD-TYPE     23     11     11     13
D18V3, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                           11                             11
  CLUS_3                            6                             11
  CLUS_4                            8                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        3      3     11      6      5
  DEL PEAK 18(15Q15.1) WILD-TYPE     19      9     11      7     12
D18V4, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            3                              9
  CLUS_3                           11                             11
  CLUS_4                            6                              7
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q15.1) MUTATED       11     12      5
  DEL PEAK 18(15Q15.1) WILD-TYPE     25     17     17
D18V5, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                           12                             17
  CLUS_3                            5                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        8     10      1      6      3
  DEL PEAK 18(15Q15.1) WILD-TYPE     21     15      5      7     11
D18V6, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                           10                             15
  CLUS_3                            1                              5
  CLUS_4                            6                              7
  CLUS_5                            3                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q15.1) MUTATED       13      8      5
  DEL PEAK 18(15Q15.1) WILD-TYPE     24     19     16
D18V7, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                            8                             19
  CLUS_3                            5                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3      8      2     13
  DEL PEAK 18(15Q15.1) WILD-TYPE     13      9     19     18
D18V8, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            8                              9
  CLUS_3                            2                             19
  CLUS_4                           13                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 19(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        1      2      0      3
  DEL PEAK 19(16P13.3) WILD-TYPE     22     24     24     11
D19V1, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            2                             24
  CLUS_3                            0                             24
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      0      2      4
  DEL PEAK 19(16P13.3) WILD-TYPE     14     20     24     23
D19V2, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            0                             20
  CLUS_3                            2                             24
  CLUS_4                            4                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     26     21     15     18
D19V3, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             26
  CLUS_2                            1                             21
  CLUS_3                            2                             15
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        0      0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     22     12     21     11     14
D19V4, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             22
  CLUS_2                            0                             12
  CLUS_3                            1                             21
  CLUS_4                            2                             11
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16P13.3) MUTATED        3      1      2
  DEL PEAK 19(16P13.3) WILD-TYPE     33     28     20
D19V5, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            3                             33
  CLUS_2                            1                             28
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        2      2      1      1      0
  DEL PEAK 19(16P13.3) WILD-TYPE     27     23      5     12     14
D19V6, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             23
  CLUS_3                            1                              5
  CLUS_4                            1                             12
  CLUS_5                            0                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16P13.3) MUTATED        2      2      2
  DEL PEAK 19(16P13.3) WILD-TYPE     35     25     19
D19V7, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            2                             25
  CLUS_3                            2                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      2      1      3
  DEL PEAK 19(16P13.3) WILD-TYPE     16     15     20     28
D19V8, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            2                             15
  CLUS_3                            1                             20
  CLUS_4                            3                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 20(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        1      7      9      5
  DEL PEAK 20(16Q24.1) WILD-TYPE     22     19     15      9
D20V1, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            7                             19
  CLUS_3                            9                             15
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        3      4      9      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     11     16     17     21
D20V2, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                             16
  CLUS_3                            9                             17
  CLUS_4                            6                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        3      7      5      7
  DEL PEAK 20(16Q24.1) WILD-TYPE     23     15     12     14
D20V3, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                            7                             15
  CLUS_3                            5                             12
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        3      2      8      3      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     19     10     14     10     11
D20V4, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            2                             10
  CLUS_3                            8                             14
  CLUS_4                            3                             10
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16Q24.1) MUTATED        9      9      4
  DEL PEAK 20(16Q24.1) WILD-TYPE     27     20     18
D20V5, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                            9                             20
  CLUS_3                            4                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        6      8      1      6      1
  DEL PEAK 20(16Q24.1) WILD-TYPE     23     17      5      7     13
D20V6, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            8                             17
  CLUS_3                            1                              5
  CLUS_4                            6                              7
  CLUS_5                            1                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16Q24.1) MUTATED       10      7      4
  DEL PEAK 20(16Q24.1) WILD-TYPE     27     20     17
D20V7, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                            7                             20
  CLUS_3                            4                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        1      6      5      9
  DEL PEAK 20(16Q24.1) WILD-TYPE     15     11     16     22
D20V8, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            6                             11
  CLUS_3                            5                             16
  CLUS_4                            9                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 21(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       12     23     23     10
  DEL PEAK 21(22Q12.2) WILD-TYPE     11      3      1      4
D21V1, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                           23                              3
  CLUS_3                           23                              1
  CLUS_4                           10                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       10     19     25     14
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      1      1     13
D21V2, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           10                              4
  CLUS_2                           19                              1
  CLUS_3                           25                              1
  CLUS_4                           14                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       20     17     11     20
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      5      6      1
D21V3, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           20                              6
  CLUS_2                           17                              5
  CLUS_3                           11                              6
  CLUS_4                           20                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED       15     12     18      7     16
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      0      4      6      1
D21V4, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           15                              7
  CLUS_2                           12                              0
  CLUS_3                           18                              4
  CLUS_4                            7                              6
  CLUS_5                           16                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       29     22     17
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      7      5
D21V5, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           29                              7
  CLUS_2                           22                              7
  CLUS_3                           17                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED       23     18      4     12     11
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      7      2      1      3
D21V6, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           23                              6
  CLUS_2                           18                              7
  CLUS_3                            4                              2
  CLUS_4                           12                              1
  CLUS_5                           11                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       30     24     13
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      3      8
D21V7, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           30                              7
  CLUS_2                           24                              3
  CLUS_3                           13                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       12     14     15     26
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      3      6      5
D21V8, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           12                              4
  CLUS_2                           14                              3
  CLUS_3                           15                              6
  CLUS_4                           26                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
